Query 006373
Match_columns 648
No_of_seqs 296 out of 2325
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 22:20:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006373.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006373hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0236 Sulfate/bicarbonate/ox 100.0 3E-102 6E-107 875.3 45.4 621 12-637 17-654 (665)
2 TIGR00815 sulP high affinity s 100.0 2.9E-98 6E-103 840.6 57.2 560 59-622 1-563 (563)
3 COG0659 SUL1 Sulfate permease 100.0 3.4E-90 7.3E-95 761.2 52.1 547 54-631 3-552 (554)
4 PRK11660 putative transporter; 100.0 4E-89 8.6E-94 766.6 54.5 523 62-628 19-565 (568)
5 PF00916 Sulfate_transp: Sulfa 100.0 3E-46 6.4E-51 386.2 16.4 279 171-449 1-280 (280)
6 PRK10720 uracil transporter; P 100.0 4.9E-31 1.1E-35 285.4 32.7 387 36-485 3-414 (428)
7 TIGR03173 pbuX xanthine permea 100.0 4.3E-30 9.3E-35 278.4 31.0 324 82-447 10-353 (406)
8 TIGR00801 ncs2 uracil-xanthine 100.0 1.3E-29 2.8E-34 274.3 31.6 343 45-445 3-367 (415)
9 COG2233 UraA Xanthine/uracil p 100.0 5.5E-29 1.2E-33 262.7 23.5 386 43-479 12-432 (451)
10 PRK11412 putative uracil/xanth 100.0 1.8E-26 3.8E-31 247.8 33.7 364 45-453 6-381 (433)
11 TIGR03616 RutG pyrimidine util 100.0 1.3E-26 2.9E-31 250.7 30.5 344 36-444 19-379 (429)
12 COG2252 Xanthine/uracil/vitami 99.9 1.3E-25 2.9E-30 235.2 30.7 384 53-480 5-407 (436)
13 PF13792 Sulfate_tra_GLY: Sulf 99.9 9.3E-25 2E-29 179.3 7.2 83 58-140 1-84 (84)
14 PF00860 Xan_ur_permease: Perm 99.9 4.8E-22 1E-26 214.3 27.0 334 82-447 16-367 (389)
15 PF01740 STAS: STAS domain; I 99.7 4E-18 8.6E-23 152.2 7.6 117 504-622 1-117 (117)
16 TIGR02886 spore_II_AA anti-sig 99.7 3.7E-16 7.9E-21 136.9 10.4 102 509-623 5-106 (106)
17 TIGR00843 benE benzoate transp 99.6 1E-13 2.2E-18 146.0 28.3 341 74-473 22-392 (395)
18 cd07041 STAS_RsbR_RsbS_like Su 99.6 9.8E-16 2.1E-20 134.9 10.6 102 510-623 8-109 (109)
19 cd06844 STAS Sulphate Transpor 99.6 9.4E-15 2E-19 126.5 9.9 92 509-610 5-96 (100)
20 TIGR00834 ae anion exchange pr 99.6 2.3E-12 5E-17 147.4 30.0 348 77-432 373-791 (900)
21 KOG1292 Xanthine/uracil transp 99.5 9.8E-13 2.1E-17 137.8 22.2 349 45-441 10-400 (510)
22 KOG1172 Na+-independent Cl/HCO 99.5 8.6E-12 1.9E-16 139.0 28.8 323 102-432 395-767 (876)
23 PF03594 BenE: Benzoate membra 99.5 2E-11 4.4E-16 126.2 29.1 274 154-474 87-377 (378)
24 cd07042 STAS_SulP_like_sulfate 99.4 2.7E-12 5.9E-17 112.2 11.9 100 509-617 6-105 (107)
25 TIGR00377 ant_ant_sig anti-ant 99.4 9.9E-13 2.1E-17 115.4 8.9 100 509-621 9-108 (108)
26 cd07043 STAS_anti-anti-sigma_f 99.2 4.5E-11 9.7E-16 102.9 10.1 90 510-610 6-95 (99)
27 COG1366 SpoIIAA Anti-anti-sigm 99.1 6.9E-10 1.5E-14 98.8 10.6 98 514-624 15-112 (117)
28 COG3135 BenE Uncharacterized p 99.1 1.5E-07 3.2E-12 95.6 26.5 274 154-474 102-392 (402)
29 PF00955 HCO3_cotransp: HCO3- 99.1 3.9E-11 8.4E-16 130.7 1.1 345 80-433 40-473 (510)
30 PF13466 STAS_2: STAS domain 98.9 4.2E-09 9.1E-14 87.0 7.8 79 516-606 1-79 (80)
31 PF11840 DUF3360: Protein of u 98.0 0.0017 3.8E-08 66.6 23.1 254 158-445 145-418 (492)
32 COG3113 Predicted NTP binding 97.3 0.00088 1.9E-08 55.9 7.3 84 515-610 13-96 (99)
33 TIGR00801 ncs2 uracil-xanthine 93.6 0.31 6.7E-06 53.3 9.3 19 321-339 242-260 (415)
34 COG0659 SUL1 Sulfate permease 93.2 1.4 2.9E-05 50.0 13.8 108 318-431 24-143 (554)
35 TIGR00815 sulP high affinity s 93.1 2.9 6.4E-05 47.7 16.5 111 315-431 14-142 (563)
36 PF11964 SpoIIAA-like: SpoIIAA 92.1 0.073 1.6E-06 46.2 1.5 105 512-627 1-108 (109)
37 PF14213 DUF4325: Domain of un 91.1 1 2.2E-05 36.3 7.0 66 526-603 2-70 (74)
38 PF13344 Hydrolase_6: Haloacid 90.1 0.72 1.6E-05 39.6 5.7 72 556-629 1-77 (101)
39 TIGR03173 pbuX xanthine permea 90.1 9.8 0.00021 41.5 15.9 109 80-205 225-343 (406)
40 PRK11412 putative uracil/xanth 89.9 7.5 0.00016 42.7 14.6 117 76-209 242-369 (433)
41 PRK10720 uracil transporter; P 88.5 1.9 4E-05 47.4 8.9 133 270-405 181-313 (428)
42 PRK11660 putative transporter; 85.6 24 0.00051 40.4 16.0 109 315-429 29-146 (568)
43 KOG3040 Predicted sugar phosph 82.9 2 4.4E-05 41.4 4.8 75 552-628 6-85 (262)
44 COG2233 UraA Xanthine/uracil p 76.7 7.5 0.00016 42.5 7.4 128 268-399 197-327 (451)
45 TIGR00640 acid_CoA_mut_C methy 72.6 40 0.00088 30.4 10.0 96 511-631 29-128 (132)
46 TIGR03616 RutG pyrimidine util 70.0 20 0.00043 39.4 8.9 86 103-205 284-370 (429)
47 PRK09928 choline transport pro 70.0 2.2E+02 0.0048 33.1 17.7 29 564-592 547-575 (679)
48 COG5439 Uncharacterized conser 68.3 9.3 0.0002 31.8 4.3 43 552-594 45-88 (112)
49 PRK02261 methylaspartate mutas 67.7 21 0.00046 32.5 7.1 74 552-633 54-137 (137)
50 PF09345 DUF1987: Domain of un 66.8 24 0.00053 30.1 6.8 69 514-590 10-81 (99)
51 PRK03659 glutathione-regulated 65.8 84 0.0018 36.2 13.2 77 527-628 408-484 (601)
52 TIGR01452 PGP_euk phosphoglyco 65.5 13 0.00028 38.1 6.0 74 553-628 2-80 (279)
53 PF00860 Xan_ur_permease: Perm 64.9 9.4 0.0002 41.4 5.0 55 351-405 266-320 (389)
54 TIGR00843 benE benzoate transp 63.6 70 0.0015 34.6 11.1 104 317-423 22-142 (395)
55 PF13788 DUF4180: Domain of un 63.4 1E+02 0.0023 27.0 10.1 100 511-625 4-112 (113)
56 PRK10444 UMP phosphatase; Prov 62.1 17 0.00036 36.8 5.9 73 554-628 2-79 (248)
57 KOG2882 p-Nitrophenyl phosphat 61.1 22 0.00048 36.5 6.4 78 552-630 21-103 (306)
58 PRK10669 putative cation:proto 60.2 2.7E+02 0.0058 31.7 15.9 64 519-607 417-480 (558)
59 TIGR01684 viral_ppase viral ph 59.5 25 0.00054 36.3 6.5 60 551-610 124-189 (301)
60 PLN02645 phosphoglycolate phos 59.1 38 0.00082 35.4 8.1 69 552-622 27-100 (311)
61 TIGR01458 HAD-SF-IIA-hyp3 HAD- 56.6 23 0.00049 36.0 5.8 74 553-628 1-83 (257)
62 cd02071 MM_CoA_mut_B12_BD meth 56.1 46 0.001 29.4 7.1 68 552-627 50-121 (122)
63 TIGR01457 HAD-SF-IIA-hyp2 HAD- 55.7 24 0.00053 35.5 5.9 73 554-628 2-79 (249)
64 COG4618 ArpD ABC-type protease 55.4 44 0.00096 37.0 7.8 76 551-628 489-564 (580)
65 PRK11475 DNA-binding transcrip 52.0 43 0.00093 32.8 6.7 75 523-613 22-99 (207)
66 KOG1292 Xanthine/uracil transp 50.0 63 0.0014 35.5 7.9 74 103-192 309-383 (510)
67 TIGR01459 HAD-SF-IIA-hyp4 HAD- 49.0 64 0.0014 32.2 7.7 74 552-627 7-85 (242)
68 PF00916 Sulfate_transp: Sulfa 48.9 1.5E+02 0.0033 30.0 10.7 154 253-408 88-243 (280)
69 cd07023 S49_Sppa_N_C Signal pe 48.1 81 0.0018 30.7 8.0 65 513-588 2-69 (208)
70 TIGR01501 MthylAspMutase methy 47.7 52 0.0011 29.8 6.0 61 568-631 63-133 (134)
71 cd07019 S49_SppA_1 Signal pept 47.4 69 0.0015 31.3 7.4 67 513-590 2-75 (211)
72 PRK09426 methylmalonyl-CoA mut 47.2 1.4E+02 0.0031 35.1 11.0 77 552-636 633-713 (714)
73 PHA00736 hypothetical protein 46.4 80 0.0017 24.4 5.7 68 90-167 4-72 (79)
74 TIGR00822 EII-Sor PTS system, 44.2 83 0.0018 32.1 7.4 29 171-199 161-189 (265)
75 PRK03562 glutathione-regulated 44.2 3.3E+02 0.0071 31.6 13.3 42 552-608 423-464 (621)
76 PF03594 BenE: Benzoate membra 42.6 3E+02 0.0066 29.5 11.5 105 317-423 6-126 (378)
77 TIGR00706 SppA_dom signal pept 41.8 1.1E+02 0.0025 29.7 8.0 58 513-582 2-59 (207)
78 COG0573 PstC ABC-type phosphat 41.1 4.4E+02 0.0096 27.5 14.6 60 60-119 63-138 (310)
79 COG1137 YhbG ABC-type (unclass 41.0 96 0.0021 30.3 6.8 52 552-606 157-208 (243)
80 cd00394 Clp_protease_like Case 40.8 54 0.0012 30.3 5.3 57 515-582 1-57 (161)
81 COG0647 NagD Predicted sugar p 40.4 60 0.0013 33.2 5.8 78 552-630 7-89 (269)
82 PF14188 DUF4311: Domain of un 39.8 39 0.00084 31.5 3.8 22 72-93 88-114 (213)
83 COG1433 Uncharacterized conser 39.7 89 0.0019 27.8 6.0 49 577-628 57-106 (121)
84 TIGR00844 c_cpa1 na(+)/h(+) an 39.6 7.3E+02 0.016 29.6 18.9 28 160-188 14-43 (810)
85 cd07022 S49_Sppa_36K_type Sign 39.1 1E+02 0.0022 30.2 7.2 35 551-587 41-75 (214)
86 PHA03398 viral phosphatase sup 38.9 78 0.0017 32.8 6.3 60 551-610 126-191 (303)
87 COG1296 AzlC Predicted branche 38.9 51 0.0011 33.0 4.9 47 70-116 10-56 (238)
88 PF00072 Response_reg: Respons 38.3 81 0.0018 26.4 5.7 70 523-611 28-99 (112)
89 TIGR01672 AphA HAD superfamily 38.1 1E+02 0.0022 30.9 7.1 78 518-610 42-161 (237)
90 PF03609 EII-Sor: PTS system s 35.4 2.5E+02 0.0055 28.1 9.4 29 170-198 161-189 (238)
91 COG4129 Predicted membrane pro 33.9 1E+02 0.0022 32.6 6.4 52 384-441 8-59 (332)
92 COG1512 Beta-propeller domains 33.6 1.8E+02 0.0039 29.8 7.9 119 514-641 35-172 (271)
93 cd03412 CbiK_N Anaerobic cobal 33.6 1.7E+02 0.0036 26.1 7.0 53 568-628 13-67 (127)
94 cd02067 B12-binding B12 bindin 33.5 2.8E+02 0.006 24.0 8.4 65 552-627 50-118 (119)
95 TIGR01686 FkbH FkbH-like domai 33.0 79 0.0017 33.1 5.6 59 552-610 2-78 (320)
96 COG0565 LasT rRNA methylase [T 32.8 47 0.001 33.2 3.5 82 552-641 4-88 (242)
97 PRK09757 PTS system N-acetylga 32.6 1.4E+02 0.0031 30.4 7.1 27 172-198 163-189 (267)
98 PRK11778 putative inner membra 32.3 4.4E+02 0.0094 27.9 10.8 70 510-590 89-159 (330)
99 PRK10953 cysJ sulfite reductas 31.4 3E+02 0.0064 31.8 10.2 101 522-640 486-599 (600)
100 TIGR02717 AcCoA-syn-alpha acet 30.8 4E+02 0.0086 29.4 10.8 93 519-631 344-445 (447)
101 KOG0236 Sulfate/bicarbonate/ox 30.0 1E+02 0.0022 35.9 6.3 48 391-439 170-218 (665)
102 PF07466 DUF1517: Protein of u 29.8 4.2E+02 0.0092 27.4 10.1 31 509-540 100-130 (289)
103 PF04206 MtrE: Tetrahydrometha 28.8 3.5E+02 0.0076 26.9 8.5 89 96-200 51-143 (269)
104 PF10337 DUF2422: Protein of u 28.4 6.8E+02 0.015 27.6 12.3 78 392-477 136-213 (459)
105 PF03818 MadM: Malonate/sodium 27.5 1.7E+02 0.0038 22.4 4.9 17 268-284 41-57 (60)
106 PRK15065 PTS system mannose-sp 27.0 6.9E+02 0.015 25.5 12.7 28 172-199 163-190 (262)
107 TIGR01662 HAD-SF-IIIA HAD-supe 26.8 1.2E+02 0.0025 26.8 4.9 77 554-630 1-98 (132)
108 COG4152 ABC-type uncharacteriz 26.7 2.8E+02 0.0061 28.1 7.6 43 551-594 147-189 (300)
109 PF00563 EAL: EAL domain; Int 26.6 1.5E+02 0.0032 28.9 6.1 57 552-608 169-227 (236)
110 COG1121 ZnuC ABC-type Mn/Zn tr 26.2 1.4E+02 0.003 30.3 5.6 43 551-594 156-198 (254)
111 COG2179 Predicted hydrolase of 26.1 1.4E+02 0.0029 28.2 5.1 58 551-608 26-87 (175)
112 TIGR01113 mtrE N5-methyltetrah 26.1 4.4E+02 0.0096 26.4 8.7 87 96-200 51-143 (283)
113 TIGR01460 HAD-SF-IIA Haloacid 25.8 1.3E+02 0.0028 29.9 5.5 71 556-628 1-77 (236)
114 TIGR02847 CyoD cytochrome o ub 25.7 4.1E+02 0.0089 22.6 7.5 55 181-250 28-82 (96)
115 cd00851 MTH1175 This uncharact 25.6 1.5E+02 0.0032 24.8 5.1 48 576-626 54-102 (103)
116 COG0053 MMT1 Predicted Co/Zn/C 25.2 7.9E+02 0.017 25.5 11.9 28 514-541 249-276 (304)
117 TIGR00210 gltS sodium--glutama 25.2 1.3E+02 0.0027 32.8 5.5 38 163-200 10-51 (398)
118 PF02579 Nitro_FeMo-Co: Dinitr 25.1 1.6E+02 0.0034 24.1 5.1 49 576-627 44-93 (94)
119 cd06207 CyPoR_like NADPH cytoc 24.8 2.6E+02 0.0057 30.1 8.0 58 575-639 319-380 (382)
120 PTZ00445 p36-lilke protein; Pr 24.8 1.6E+02 0.0036 28.9 5.6 48 551-598 41-104 (219)
121 cd02072 Glm_B12_BD B12 binding 24.5 1.6E+02 0.0034 26.5 5.1 67 552-626 50-126 (128)
122 PRK10582 cytochrome o ubiquino 24.4 4.8E+02 0.01 22.8 8.5 32 181-212 39-70 (109)
123 PRK04596 minC septum formation 24.1 3.2E+02 0.007 27.6 7.7 75 525-607 28-103 (248)
124 PLN00124 succinyl-CoA ligase [ 24.0 2.3E+02 0.0051 31.0 7.3 72 551-628 344-418 (422)
125 cd07018 S49_SppA_67K_type Sign 23.4 1.9E+02 0.0042 28.4 6.1 38 551-589 45-82 (222)
126 TIGR02230 ATPase_gene1 F0F1-AT 23.4 97 0.0021 26.5 3.3 42 240-281 52-93 (100)
127 TIGR03580 EF_0832 conserved hy 23.2 1.3E+02 0.0028 28.4 4.3 27 68-94 81-114 (233)
128 TIGR01016 sucCoAbeta succinyl- 22.9 4.3E+02 0.0094 28.4 9.2 87 525-628 293-383 (386)
129 TIGR00931 antiport_nhaC Na+/H+ 22.8 1.1E+03 0.023 26.2 17.8 91 176-283 181-271 (454)
130 PRK14046 malate--CoA ligase su 22.6 5.5E+02 0.012 27.8 9.9 89 525-630 293-385 (392)
131 COG2450 Uncharacterized conser 22.4 3.2E+02 0.007 24.3 6.4 37 554-590 65-101 (124)
132 COG1509 KamA Lysine 2,3-aminom 22.4 3.4E+02 0.0074 28.9 7.7 108 508-628 185-311 (369)
133 PF02308 MgtC: MgtC family; I 22.2 4.7E+02 0.01 23.5 7.9 33 376-408 13-46 (134)
134 COG3603 Uncharacterized conser 21.8 3.2E+02 0.0069 24.2 6.1 67 510-588 60-126 (128)
135 cd07021 Clp_protease_NfeD_like 21.8 1.6E+02 0.0035 28.0 5.0 47 513-570 1-47 (178)
136 PF03956 DUF340: Membrane prot 21.7 1.3E+02 0.0027 29.2 4.2 54 412-465 23-77 (191)
137 PF04156 IncA: IncA protein; 21.6 2.6E+02 0.0056 26.6 6.5 51 158-208 8-61 (191)
138 PRK01973 septum formation inhi 21.1 3.9E+02 0.0084 27.4 7.7 73 525-606 26-98 (271)
139 PRK00972 tetrahydromethanopter 20.9 6.4E+02 0.014 25.4 8.8 86 96-200 58-149 (292)
140 PF07894 DUF1669: Protein of u 20.8 1.9E+02 0.0041 29.7 5.4 65 516-598 123-187 (284)
141 PRK09757 PTS system N-acetylga 20.7 8.2E+02 0.018 25.0 10.0 62 407-474 167-237 (267)
142 PF06946 Phage_holin_5: Phage 20.4 1.6E+02 0.0035 24.8 4.0 15 269-283 37-51 (93)
143 PRK00696 sucC succinyl-CoA syn 20.3 7.2E+02 0.016 26.7 10.3 88 525-629 293-384 (388)
144 PRK10840 transcriptional regul 20.2 4.2E+02 0.0092 25.3 7.9 71 552-625 49-122 (216)
145 cd03238 ABC_UvrA The excision 20.2 3.5E+02 0.0076 25.6 6.9 45 553-598 108-152 (176)
146 KOG0237 Glycinamide ribonucleo 20.1 2.2E+02 0.0048 32.2 6.0 48 558-606 42-93 (788)
147 COG1105 FruK Fructose-1-phosph 20.0 5.5E+02 0.012 26.8 8.7 102 516-633 104-213 (310)
No 1
>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-102 Score=875.29 Aligned_cols=621 Identities=38% Similarity=0.661 Sum_probs=544.1
Q ss_pred ecCCCCCchHHHHhhhcccccCCCCcchhhcccc--hhHHHHHHHhhhccccccCCCCCh-hhhhhhhhhHHHHHHhhhh
Q 006373 12 VSIPPSKPFFNSLKSGLKETLFPDDPFRQFKNQS--ASRKLLLGLQYFVPILEWAPRYTF-EFFKSDLLAGITIASLAVP 88 (648)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~wl~~y~~-~~l~~Di~aGltv~~~~iP 88 (648)
++.|++++..+..+...++....+.+.++++++. +++++.+.+++++|+++|+|+|++ +++.+|++||+|+|++++|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Pil~Wlp~Y~~~~~l~~DliaGltvg~l~VP 96 (665)
T KOG0236|consen 17 VDTPTFDSSNEEEKSSVENTPTRKDKSERFRNKQRCSSNKFLRSLLSLLPILEWLPKYSLKEWLLGDLIAGLTVGSLSVP 96 (665)
T ss_pred ccCCCCCcchhhhhccccCccccccHHHHhhccccccHHHHHHHHHhhccHhhhhhcCCchhhchHHHhcCceeeeeecc
Confidence 3455555555544444444433445555555543 456788999999999999999999 6899999999999999999
Q ss_pred hHHHHHHHhCCCcchhhHhhhhhhhhhhhccCCCccccchhhHHHHHHHHhhhcccCCCC---ChhHHHHHHHHHHHHHH
Q 006373 89 QGISYANLANLPPILGLYSSFVPPLVYAMMGSSKDLAVGTVAVGSLLISSMLGKEVNPNE---NPKLYVQLALTATFFAG 165 (648)
Q Consensus 89 q~~aya~laglpp~~gl~~~~~~~li~~~~Gss~~~~~Gp~a~~s~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~G 165 (648)
|+||||.+||+||+||||++++|+++|++||+|||+++||++++|+|+++++++..+... ++..+++++.+++|++|
T Consensus 97 Q~iaYa~la~lppiyGLYssf~~~~iY~~fGtsr~isiG~~av~sLmv~~~v~~~v~~~~~~~~~~~~i~va~~lt~l~G 176 (665)
T KOG0236|consen 97 QGLAYALLAGLPPIYGLYSSFFPPLIYAIFGTSRHVSIGPFAVVSLMVGTVVSQVVLSEAPSNDIATTIQVATTLTFLTG 176 (665)
T ss_pred hHHHHHHHcCCChHHHHHHHHHHHHHheeccCCCcccccHHHHHHHHHHHHHHHHHhccCCCcCcchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987775543222 45567899999999999
Q ss_pred HHHHHHHhhhhhhHHhhchHhHHHHHHhhhHHHHHHhhhhhhhCcccccCCCchHHHH---HHHHhcCCCCchhhhHHHH
Q 006373 166 VFQASLGFLRLGFVVDFLSHATIVGFMGGAATVVCLQQLKGILGLVRFTHATDLQSVM---RSVFSQTSQWRWESGVLGC 242 (648)
Q Consensus 166 i~~~llg~~~lg~l~~~lp~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~ 242 (648)
++|++||++|+|++++|+|+|++.||++|+|++++.+|+|.++|+++.+...+....+ .....+..+. +.++++++
T Consensus 177 iiq~~mG~lrLGfl~~~lS~~~l~GFt~gaa~~I~~sQlk~llGi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l 255 (665)
T KOG0236|consen 177 IIQLILGLLRLGFLVRFLSEPALSGFTTGAALHIVTSQLKVLLGITSFPRHSGPGSIVFIVFDLLANLPKT-LATLVLSL 255 (665)
T ss_pred HHHHHHHHHhcChHHHHccHHHHhHhhhhhhhhhhHHhhHhhccccccCCCCCceeEEEeeHHhhhccccc-chhhhhHH
Confidence 9999999999999999999999999999999999999999999998554444443332 3334444433 77899999
Q ss_pred HHHHHHHHHhhh-hcccccchhhccchhHHHHHHHHHHHHhccccC-CCeEEeecCCCCCCCCCCCcCCCChhhHHHHHH
Q 006373 243 CFLLFLLLTRYF-SKKKATFFWINAMAPLTSVILGSVLVYFTDAER-HGVQVIGQLKKGLNPPSLSELDFGSPYLMTAVK 320 (648)
Q Consensus 243 ~~l~~l~~~~~~-~~~~~~~~~~p~~~~Li~vvi~t~i~~~~~~~~-~~~~~~g~ip~g~p~p~~p~~~~~~~~~~~~~~ 320 (648)
+++++++..|.+ .++.++.+|+|.|.++++++++|+++|.++.+. +.....+++|.|+|+|.+|.+++.. ..+.
T Consensus 256 ~~l~~L~~~k~~~~~~~~k~~~v~~~~~li~vIi~T~~~~~~~~~~~~~~~~~~~i~~g~~~~~lp~~~~~~----~~~~ 331 (665)
T KOG0236|consen 256 IFLVVLLLTKELNPKFKKKLFSVPIPFELIVVIIGTLISYIFRLEGRYGPIIVGEIPRGFPPPSLPPLSLTP----QVIP 331 (665)
T ss_pred HHHHHHHHHHHhhhhhcccceeecccHHHHHHHHHHHHHHHhccccccCCeeeccCCCCCCCCCCCChhhhH----HHHH
Confidence 999999999954 444455556999999999999999999998765 4566667999999999999887643 5666
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCcccCCchHHHHHhhhhhhhhhcCCcccccccchhhHhhhcCCCchhHHHHHHHHH
Q 006373 321 TGVIIGVIALAEGIAVGRSFAMFKNYHIDGNKEMVAFGMMNIAGSCTSCYLTAGPFSRSAVNFNAGCKTAVSNIVMATAV 400 (648)
Q Consensus 321 ~~~~~aiv~~~~~~~~~~~~~~~~~~~~~~n~el~a~GiaNi~~slfg~~p~~~s~srs~~~~~~G~~t~la~i~~a~i~ 400 (648)
.++.++++++.++++++|+++++++|++|.||||+|+|++|++||||+|+|++++++||++|.++|+|||++++++++++
T Consensus 332 ~~~~i~iva~~~~iai~k~fa~~~~y~vd~nqELiAlG~~Ni~sSff~~~p~tgs~sRSav~~~sG~~T~~s~i~~~~~v 411 (665)
T KOG0236|consen 332 DAFAIAIVALLEHIAIGKSFASLHGYKVDSNQELIALGISNILSSFFGCYPTTGSFSRSAVNIKSGGRTQVAGIVSAALV 411 (665)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCeeCCChHHHHHHHHHHhhhhhceEcccchhhHHHHHhhcCCcchHHHHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhchhHHHHHHHHHHHhh-ccCHHHHHHHhccCccchhHHhhhhhhhhhccchhhHHHHHHHHHHHHHH
Q 006373 401 MITLLFLTPLFHYTPLVVLSSIIIAAMLG-LIDYEAVIHLWKLDKFDFIVCMSAYVGVVFGSVEIGLVIAVTISLLRVLL 479 (648)
Q Consensus 401 ll~~l~l~~ll~~iP~~vLa~ili~~~~~-li~~~~~~~l~~~~~~d~~i~~~t~~~~~~~~~~~Gl~~Gv~~sl~~~~~ 479 (648)
++++++++|+++++|+|+||++++.++.+ +.+.++++.+||.+|.|+.+|+.|++.+++.+++.|+++|+++|++.+++
T Consensus 412 l~~l~~l~p~f~~iP~~vLaaIIi~a~~~~l~~~~~~~~lwr~~k~D~~~~~~t~~~~i~~~ve~Glligv~~s~~~ii~ 491 (665)
T KOG0236|consen 412 LLALLFLGPLFYYIPKCVLAAIIISALIGMLIQLEDLKPLWRLSKIDLLIWVVTFFTTIFLSLEIGLLIGVAFSLFFIIL 491 (665)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhhHHHhhhhhhhhheeCCHHHHHHHHHHhheeeEehhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 67999999999999999999999999999999999999999999999999
Q ss_pred HhhccceeEeeeccCCcccccCCCCCCcccCCcEEEEEecCceEEechHHHHHHHH--HHHHHHHHH---hhhcCCCCce
Q 006373 480 SVARPRTFVLGNIPNSVTYRSIDQYPVAKSVPGVLILHIDAPIYFANASYLRERIS--RWIYEEEEK---LKISGETGLQ 554 (648)
Q Consensus 480 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~ivrl~g~L~F~na~~~~~~l~--~~i~~~~~~---~~~~~~~~~~ 554 (648)
|.+||++..++++++++.|++.++|++.++.++++|+|+++|++|.|.+.+++++. +++++.+.. .++...++.+
T Consensus 492 ~~~~p~~~~l~~~~~t~~~~~~~~y~~~~~~~gi~i~r~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (665)
T KOG0236|consen 492 RSQRPRISLLGRIPRTNIYRDINQYRELKEIPGIKIFRISSPLLFGNVESFEKKLERLKYLRKEEVLENSARELHENSIH 571 (665)
T ss_pred HhcCcchhhhcccCCCccccchhhcchhhccCceEEEEeccceeeccHHHHHHHHHHHHhhhhcccccCcccccccCcce
Confidence 99999999999999999999999999999999999999999999999999999883 444332111 1111222489
Q ss_pred EEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHhCCCccccCCcceecCHHHHHHHHHHhhhcCC
Q 006373 555 YVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANPRSEVIKKLNNSKFIENIGQEWIYLTVAEAVAACNFMLHTCK 634 (648)
Q Consensus 555 ~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~~~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~~~~l~~~~ 634 (648)
++|+||++++++|++|+.+|+++.+++++++++++++|+++++++.|.++++.+.++++++|.|++||++.|+..+....
T Consensus 572 ~vild~s~v~~iD~~g~~~L~~l~~~~~~~~i~~~~~n~~~~v~~~l~~~~~~~~~~~~~~f~tv~~av~~~~~~~~~~~ 651 (665)
T KOG0236|consen 572 SVILDCSGVSFIDTSGASALKSLFKDLKTRGVQVLLANCPSSVREKLSKAGFFDFIGKDNLFLSVHDAVLDAVSELSRGT 651 (665)
T ss_pred EEEEECCccchhhHHHHHHHHHHHHHHHhcCcEEEEeCCCHHHHHHHHhhccccccchhhhhccHHHHHHHHHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999998999999999999999999999988666
Q ss_pred CCC
Q 006373 635 SNP 637 (648)
Q Consensus 635 ~~~ 637 (648)
+..
T Consensus 652 ~~~ 654 (665)
T KOG0236|consen 652 DEE 654 (665)
T ss_pred ccc
Confidence 533
No 2
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=100.00 E-value=2.9e-98 Score=840.58 Aligned_cols=560 Identities=45% Similarity=0.761 Sum_probs=520.4
Q ss_pred cccccCCCCChhhhhhhhhhHHHHHHhhhhhHHHHHHHhCCCcchhhHhhhhhhhhhhhccCCCccccchhhHHHHHHHH
Q 006373 59 PILEWAPRYTFEFFKSDLLAGITIASLAVPQGISYANLANLPPILGLYSSFVPPLVYAMMGSSKDLAVGTVAVGSLLISS 138 (648)
Q Consensus 59 p~~~wl~~y~~~~l~~Di~aGltv~~~~iPq~~aya~laglpp~~gl~~~~~~~li~~~~Gss~~~~~Gp~a~~s~~~~~ 138 (648)
|+++|+++|+++++++|++||+|++++++||+||||.++|+||++|||++++++++|++||+||++++||++.+++++++
T Consensus 1 p~~~wl~~y~~~~l~~Di~aGltv~~~~iP~~~ayA~laglpp~~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~~ 80 (563)
T TIGR00815 1 PVLRWLPHYRLKKFKGDLMAGLTVGILLIPQAMAYAILAGLSPIYGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGS 80 (563)
T ss_pred ChhhhhhhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhchHhHHHHHHhhhHHHHHHhhhhhhhCcccccCCCc
Q 006373 139 MLGKEVNPNENPKLYVQLALTATFFAGVFQASLGFLRLGFVVDFLSHATIVGFMGGAATVVCLQQLKGILGLVRFTHATD 218 (648)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~l~Gi~~~llg~~~lg~l~~~lp~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~~~~~ 218 (648)
++.+++.+.....++.+.+..+++++|++|+++|++|+|++++|+|+||+.||++|+|++++.+|++.++|.+..+...+
T Consensus 81 ~v~~~~~~~~~~~~~~~~a~~l~~l~Gi~~~~~g~lrlG~l~~~is~~Vi~Gf~~g~a~~i~~~Ql~~~~G~~~~~~~~~ 160 (563)
T TIGR00815 81 VIARVGLQYLFDCDAIRLAFTLTLLAGIFQVILGLLRLGFLIEFLSHAVISGFMTGAAITIGLSQLKGLLGISIFNTRTD 160 (563)
T ss_pred HHHHhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 99988644333346788889999999999999999999999999999999999999999999999999999975433456
Q ss_pred hHHHHHHHHhcCCCC---chhhhHHHHHHHHHHHHHhhhhcccccchhhccchhHHHHHHHHHHHHhccccCCCeEEeec
Q 006373 219 LQSVMRSVFSQTSQW---RWESGVLGCCFLLFLLLTRYFSKKKATFFWINAMAPLTSVILGSVLVYFTDAERHGVQVIGQ 295 (648)
Q Consensus 219 ~~~~~~~~~~~~~~~---~~~~~~i~~~~l~~l~~~~~~~~~~~~~~~~p~~~~Li~vvi~t~i~~~~~~~~~~~~~~g~ 295 (648)
+++.+...+.++++. ||.+++++++++++++..+++.+|+++..+.+.|.+|+++++++++++.++.+++++..+|+
T Consensus 161 ~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~p~~li~vi~~~~~~~~~~~~~~~~~~~g~ 240 (563)
T TIGR00815 161 TLGVVISTWAGLPNTHNWNWCTLVIGLVLLLFLLYTKKLGKRNKKLLFAPAVAPLLVVILATLAVTIGLHKKQGVSILGH 240 (563)
T ss_pred hHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhccchhcccccHHHHHHHHHHHHHHHHccCCCCeEEEee
Confidence 777777788877666 99999999999999999898888888777777789999999999999998888899999999
Q ss_pred CCCCCCCCCCCcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcccCCchHHHHHhhhhhhhhhcCCcccccc
Q 006373 296 LKKGLNPPSLSELDFGSPYLMTAVKTGVIIGVIALAEGIAVGRSFAMFKNYHIDGNKEMVAFGMMNIAGSCTSCYLTAGP 375 (648)
Q Consensus 296 ip~g~p~p~~p~~~~~~~~~~~~~~~~~~~aiv~~~~~~~~~~~~~~~~~~~~~~n~el~a~GiaNi~~slfg~~p~~~s 375 (648)
+|.++|.+..|.++ +..+...++.++.+++++++|++++++++++++++++|+|||++++|++|+++|+|||+|++++
T Consensus 241 ip~g~p~~~~~~~~--~~~~~~l~~~a~~ia~v~~~e~l~~a~~~~~~~~~~~d~n~El~a~G~~N~~~~~fg~~p~~~s 318 (563)
T TIGR00815 241 IPSGLSFFPPITLD--WELLPTLAPDAIAIAIVGLIESIAIARSFARMTGYKIDANQELVAQGIANIVGSFFSCYPATGS 318 (563)
T ss_pred cCCCCCCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHhhHHHHHHHHhCccCCCCc
Confidence 99999877777554 4678889999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHhhhcCCCchhHHHHHHHHHHHHHHHhhhhhhhchhHHHHHHHHHHHhhccCHHHHHHHhccCccchhHHhhhhh
Q 006373 376 FSRSAVNFNAGCKTAVSNIVMATAVMITLLFLTPLFHYTPLVVLSSIIIAAMLGLIDYEAVIHLWKLDKFDFIVCMSAYV 455 (648)
Q Consensus 376 ~srs~~~~~~G~~t~la~i~~a~i~ll~~l~l~~ll~~iP~~vLa~ili~~~~~li~~~~~~~l~~~~~~d~~i~~~t~~ 455 (648)
++||++|.++|+|||++++++++++++++++++|+++++|++++|+++++++++|+++++++.+||.++.|+.+|++|++
T Consensus 319 ~srs~~~~~~G~~t~~a~i~~~~~~l~~~l~~~~~l~~iP~~~la~ili~~~~~l~~~~~~~~~~~~~~~d~~i~~~~~~ 398 (563)
T TIGR00815 319 LSRTAVNAKAGCRTQLSGVVTAIVVLLVLLVLTPLFYYIPQAALAAIIISAVRGLIDYKELYKLWKADKMDFVVWLVTFF 398 (563)
T ss_pred chHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHhcccCHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccchhhHHHHHHHHHHHHHHHhhccceeEeeeccCCcccccCCCCCCcccCCcEEEEEecCceEEechHHHHHHHH
Q 006373 456 GVVFGSVEIGLVIAVTISLLRVLLSVARPRTFVLGNIPNSVTYRSIDQYPVAKSVPGVLILHIDAPIYFANASYLRERIS 535 (648)
Q Consensus 456 ~~~~~~~~~Gl~~Gv~~sl~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~ivrl~g~L~F~na~~~~~~l~ 535 (648)
+++++|++.|+++|+++|++.+++|.+||+..+++++++++.|||.+++++.++.++++++|++|+|+|+|+++|++++.
T Consensus 399 ~~~~~~~~~Gi~vGv~~s~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~I~r~~g~L~F~na~~~~~~l~ 478 (563)
T TIGR00815 399 GVVFTSIEIGLLVGVALSAAFLLLRIARPRGAVLGRVPGTEVYRSIKQYPNARPPPGILVYRVDGPLYFANAEDLKDRLL 478 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeeecCCCCcccchhhCcccCCCCCEEEEEcCCceEeCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888888999999999999999999999998
Q ss_pred HHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHhCCCccccCCcce
Q 006373 536 RWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANPRSEVIKKLNNSKFIENIGQEWI 615 (648)
Q Consensus 536 ~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~~~~v~~~l~~~g~~~~~~~~~i 615 (648)
+.++++. +++++.++.+++|+||++++++|+||+++|+++.++++++|++++++++++++++.|+++|+.+.++++++
T Consensus 479 ~~~~~~~--~~~~~~~~~~~vIlD~~~V~~iDsSg~~~L~~l~~~l~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~~ 556 (563)
T TIGR00815 479 KRIEDET--RRELERPPLQVVILDMSAVPHLDTSGIHALEELRKELKARGIQLLLANPNKAVRSTLKRGGLVELIGEEHF 556 (563)
T ss_pred HHHhhhc--cccccCCCceEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEecCChHHHHHHHHCCchhhcCCcce
Confidence 8665321 11122335799999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCHHHH
Q 006373 616 YLTVAEA 622 (648)
Q Consensus 616 f~s~~~A 622 (648)
|+|+|||
T Consensus 557 f~s~~~A 563 (563)
T TIGR00815 557 FPSVSDA 563 (563)
T ss_pred eCChhhC
Confidence 9999986
No 3
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.4e-90 Score=761.22 Aligned_cols=547 Identities=30% Similarity=0.537 Sum_probs=510.2
Q ss_pred HhhhccccccCCCCChhhhhhhhhhHHHHHHhhhhhHHHHHHHhCCCcchhhHhhhhhhhhhhhccCCCccccchhhHHH
Q 006373 54 LQYFVPILEWAPRYTFEFFKSDLLAGITIASLAVPQGISYANLANLPPILGLYSSFVPPLVYAMMGSSKDLAVGTVAVGS 133 (648)
Q Consensus 54 ~~~~~p~~~wl~~y~~~~l~~Di~aGltv~~~~iPq~~aya~laglpp~~gl~~~~~~~li~~~~Gss~~~~~Gp~a~~s 133 (648)
+...+|..+|.+.|+.+|+++|++||+|+|++++||+||||..+|+||++|||++++++++|++||+||.+++||++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~Dl~AGltva~valP~ama~a~~aGv~p~~GLyas~i~~~v~alfGgs~~~i~GPt~a~~ 82 (554)
T COG0659 3 LRSEIPTLKWLPYYFRSWLRGDLLAGLTVAAVALPLAMAFAIAAGVPPEAGLYASIVAGIIYALFGGSRGLISGPTGAFA 82 (554)
T ss_pred chhhccHHHhccccchhhhHHHHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCccceeccchhhH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhchHhHHHHHHhhhHHHHHHhhhhhhhCcccc
Q 006373 134 LLISSMLGKEVNPNENPKLYVQLALTATFFAGVFQASLGFLRLGFVVDFLSHATIVGFMGGAATVVCLQQLKGILGLVRF 213 (648)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Gi~~~llg~~~lg~l~~~lp~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~ 213 (648)
+++++.+.+.. +.+++.+..+++++|++|+++|++|+|++++|+|+||+.||++|+|+.|+.+|++.++|++..
T Consensus 83 ~v~a~~i~~~~------~~g~~~~~~~tllaGv~~i~~G~lRLG~li~fip~pVl~Gf~~Giai~I~~~Ql~~~~G~~~~ 156 (554)
T COG0659 83 VVLAAVIASLV------ETGLALAFLATLLAGVFQILLGLLRLGRLIRFIPRPVLIGFTAGIAILIILTQLPVLLGLASK 156 (554)
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 99999998443 244888999999999999999999999999999999999999999999999999999999864
Q ss_pred cCCCchHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHhhhhcccccchhhccchhHHHHHHHHHHHHhccccC--CCeE
Q 006373 214 THATDLQSVMRSVFSQTSQWRWESGVLGCCFLLFLLLTRYFSKKKATFFWINAMAPLTSVILGSVLVYFTDAER--HGVQ 291 (648)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~~~~~~~~~p~~~~Li~vvi~t~i~~~~~~~~--~~~~ 291 (648)
. .+++..+..++++..++||.+++++++++++++.++++.+++| ++|++++++|.++|.++.+. +| .
T Consensus 157 ~--~~~~~~~~~l~~~~~~~~~~~~~lg~~~l~il~~~~~~~~~~P--------~~liaiv~~t~i~~~~~~~~~~~G-~ 225 (554)
T COG0659 157 V--SGFWAKVSALFTVLLTINLATLLLGLLTLAILLFLPRLTPRIP--------SPLIALVLGTLIVWIFPLDSLRYG-E 225 (554)
T ss_pred c--cchHHHHHHHHHhcccccHHHHHHHHHHHHHHHHccchhhhCC--------cHHHHHHHHHHHHHHhcCCchhcc-c
Confidence 3 3377788889999999999999999999999999987776665 78999999999999998763 66 6
Q ss_pred EeecCCCCCCCCCCCcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcccCCchHHHHHhhhhhhhhhcCCcc
Q 006373 292 VIGQLKKGLNPPSLSELDFGSPYLMTAVKTGVIIGVIALAEGIAVGRSFAMFKNYHIDGNKEMVAFGMMNIAGSCTSCYL 371 (648)
Q Consensus 292 ~~g~ip~g~p~p~~p~~~~~~~~~~~~~~~~~~~aiv~~~~~~~~~~~~~~~~~~~~~~n~el~a~GiaNi~~slfg~~p 371 (648)
+.|++|+++|.+.+|+++ .+.+.+.++.++.+++++++|++.++++++.++|++.|.||||+|+|++|++++||||+|
T Consensus 226 i~~~lp~~~~~~~~P~~~--~~~~~~l~~~al~la~lg~iesllta~~~~~~~~~~~d~nrELiaqGiaNi~sglfgg~p 303 (554)
T COG0659 226 IPGSLPSGLPHFRLPNVS--LSLLLALLPYALALALLGLLESLLTAVSFDGMTGTKHDSNRELIAQGIANIASGLFGGIP 303 (554)
T ss_pred CcccCCcCCCcccCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHhhHHHHHHHHhCCcc
Confidence 889999999999999776 478899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhHhhhcCCCchhHHHHHHHHHHHHHHHhhhhhhhchhHHHHHHHHHHHhhccCHHHHHHHh-ccCccchhHH
Q 006373 372 TAGPFSRSAVNFNAGCKTAVSNIVMATAVMITLLFLTPLFHYTPLVVLSSIIIAAMLGLIDYEAVIHLW-KLDKFDFIVC 450 (648)
Q Consensus 372 ~~~s~srs~~~~~~G~~t~la~i~~a~i~ll~~l~l~~ll~~iP~~vLa~ili~~~~~li~~~~~~~l~-~~~~~d~~i~ 450 (648)
+|++++||++|.++|+|||++++++++++++++++++|++++||.|+|++++++++++|+++..++.++ +.+|.|+.++
T Consensus 304 ~~g~~srS~~nv~sGarT~lsgi~~a~~lll~l~~~~~~~~~IP~a~Laavli~v~~~l~~~~~~~~~~~~~~~~e~~v~ 383 (554)
T COG0659 304 ATGSISRSAINIKSGARTRLSGIIHAALLLLLLLFLAPLVSYIPLAALAAVLILVGWGLLDWSLLKPLLRKLPRGELLVL 383 (554)
T ss_pred ccchhHHHHHHHHhCCcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhccHHHHHHHHhcCCchhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999854 5889999999
Q ss_pred hhhhhhhhhccchhhHHHHHHHHHHHHHHHhhccceeEeeeccCCcccccCCCCCCcccCCcEEEEEecCceEEechHHH
Q 006373 451 MSAYVGVVFGSVEIGLVIAVTISLLRVLLSVARPRTFVLGNIPNSVTYRSIDQYPVAKSVPGVLILHIDAPIYFANASYL 530 (648)
Q Consensus 451 ~~t~~~~~~~~~~~Gl~~Gv~~sl~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~ivrl~g~L~F~na~~~ 530 (648)
++|++++++.+++.|+.+|+++|++.+++|.++|+...+++.++.+. ++.++++..+..|++.++|++||++|+|++++
T Consensus 384 ~~t~~~tv~~~l~~GV~vGi~ls~~~~i~r~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~ri~gplfF~~~~~~ 462 (554)
T COG0659 384 LTTALLTVFFDLVIGVVVGILLACLLFIRRISRPSIVVLGRVPGPAG-SDNALKPLDEIGPGVLVYRLSGPLFFGNADRL 462 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhhccCCCccc-ccccccccccCCCCeEEEEecCceEEeeHHHH
Confidence 99999999999999999999999999999999999888888877665 67778888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHhCCCcccc
Q 006373 531 RERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANPRSEVIKKLNNSKFIENI 610 (648)
Q Consensus 531 ~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~~~~v~~~l~~~g~~~~~ 610 (648)
++++.+..++ +.+.+++|+++++++|.|+.++|+++.++++++|+++.+++.+.+.++.++|.+..+..
T Consensus 463 ~~~i~~~~~~-----------~~~~~il~~~~v~~iD~ta~~al~~~~~~~~~~g~~~~i~~~~~~~~~~l~~~~~~~~i 531 (554)
T COG0659 463 ERALLGLIEE-----------RPERVILDLKSVPYIDASAAEALEDLIKELERRGIQLLIVGLSAQVLRLLRRAGLLYLV 531 (554)
T ss_pred HHHHHHHHhc-----------cCCEEEEEcccCCcCChhHHHHHHHHHHHHHHcCCEEEEeccchhhHHHHHHhcccccc
Confidence 9999885543 47899999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceecCHHHHHHHHHHhhh
Q 006373 611 GQEWIYLTVAEAVAACNFMLH 631 (648)
Q Consensus 611 ~~~~if~s~~~Av~~~~~~l~ 631 (648)
+++++|+++++|++.++....
T Consensus 532 ~~~~~f~~~~~a~~~~~~~~~ 552 (554)
T COG0659 532 GAEHIFDSVDSALEKARKLLA 552 (554)
T ss_pred ccccccchhHHHHHHHHHHhc
Confidence 989999999999999886554
No 4
>PRK11660 putative transporter; Provisional
Probab=100.00 E-value=4e-89 Score=766.63 Aligned_cols=523 Identities=22% Similarity=0.362 Sum_probs=470.8
Q ss_pred ccCCCCChhhhhhhhhhHHHHHHhhhhhHHHHHHHhCCCcchhhHhhhhhhhhhhhccCCCccccchhhHHHHHHHHhhh
Q 006373 62 EWAPRYTFEFFKSDLLAGITIASLAVPQGISYANLANLPPILGLYSSFVPPLVYAMMGSSKDLAVGTVAVGSLLISSMLG 141 (648)
Q Consensus 62 ~wl~~y~~~~l~~Di~aGltv~~~~iPq~~aya~laglpp~~gl~~~~~~~li~~~~Gss~~~~~Gp~a~~s~~~~~~~~ 141 (648)
+|+|+|+++++++|++||+|++++.+||+||||.+||+||++|||++++++++|++||+||++++||++.+++++++.+.
T Consensus 19 ~wl~~y~~~~l~~D~iAGltv~~~~iPq~mayA~lag~pp~~GLysa~~~~~vyal~Gss~~~~~Gp~a~~~~~~~~~~~ 98 (568)
T PRK11660 19 CWKEKYTAARFTRDLIAGITVGIIAIPLAMALAIASGVPPQYGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVILYPVSQ 98 (568)
T ss_pred HHHhcCCHHhhhHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCcccChhHHHHHHHHHHHH
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999888776
Q ss_pred cccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhchHhHHHHHHhhhHHHHHHhhhhhhhCcccccCCCchHH
Q 006373 142 KEVNPNENPKLYVQLALTATFFAGVFQASLGFLRLGFVVDFLSHATIVGFMGGAATVVCLQQLKGILGLVRFTHATDLQS 221 (648)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~l~Gi~~~llg~~~lg~l~~~lp~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~~~~~~~~ 221 (648)
+++ .+.+..+++++|++|+++|++|+|++.+|+|+||+.||++|+|++++.+|++.++|++..+...++++
T Consensus 99 ~~~---------~~~~~~~~~l~Gii~~l~gllrlG~l~~fip~pVi~Gf~~g~al~I~~~Ql~~~lG~~~~~~~~~~~~ 169 (568)
T PRK11660 99 QFG---------LAGLLVATLMSGIILILMGLARLGRLIEYIPLSVTLGFTSGIGIVIATLQIKDFFGLQMAHVPEHYLE 169 (568)
T ss_pred Hhh---------HHHHHHHHHHHHHHHHHHHHHhhhHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 543 34566789999999999999999999999999999999999999999999999999975433457888
Q ss_pred HHHHHHhcCCCCchhhhHHHHHHHHHHHHHhhhhcccccchhhccchhHHHHHHHHHHHHhccccCCCeEEeec------
Q 006373 222 VMRSVFSQTSQWRWESGVLGCCFLLFLLLTRYFSKKKATFFWINAMAPLTSVILGSVLVYFTDAERHGVQVIGQ------ 295 (648)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~~~~~~~~~p~~~~Li~vvi~t~i~~~~~~~~~~~~~~g~------ 295 (648)
.+.+++++++++||.++++|+++++++++++++.+|.| .+++++++++++++.++....+++.+|+
T Consensus 170 ~l~~~~~~l~~~~~~~~~~~~~~l~lll~~~~~~~~iP--------~~li~iiv~t~~~~~~~~~~~~v~~vg~~~~~~~ 241 (568)
T PRK11660 170 KVGALFQALPTINWGDALIGIVTLGVLILWPRLKIRLP--------GHLPALLAGTAVMGVLNLLGGHVATIGSRFHYVL 241 (568)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhhcccCc--------hHHHHHHHHHHHHHHHhccCCCceeecccccccc
Confidence 88899999999999999999999999888776554443 7799999999999999876667777665
Q ss_pred --------CCCCCCCCCCCc---------CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcccCCchHHHHHh
Q 006373 296 --------LKKGLNPPSLSE---------LDFGSPYLMTAVKTGVIIGVIALAEGIAVGRSFAMFKNYHIDGNKEMVAFG 358 (648)
Q Consensus 296 --------ip~g~p~p~~p~---------~~~~~~~~~~~~~~~~~~aiv~~~~~~~~~~~~~~~~~~~~~~n~el~a~G 358 (648)
+|.++|.+.+|. .+++++.+.+.++.++.+++++++|++.+++.++++++++.|.||||+|+|
T Consensus 242 ~~g~~~~~ip~~~p~~~~p~~~~~~~~~~~~~~~~~~~~ll~~a~~iaiv~~iesl~~~~~~~~~~~~~~d~n~EL~a~G 321 (568)
T PRK11660 242 ADGSQGNGIPPLLPQFVLPWNLPGADGQPFTLSWDLIRALLPAAFSMAMLGAIESLLCAVVLDGMTGTKHSANSELVGQG 321 (568)
T ss_pred cccccccCCCCCCCCCCCCccccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHh
Confidence 666666655552 124557788889999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcCCcccccccchhhHhhhcCCCchhHHHHHHHHHHHHHHHhhhhhhhchhHHHHHHHHHHHhhccCHHHHHH
Q 006373 359 MMNIAGSCTSCYLTAGPFSRSAVNFNAGCKTAVSNIVMATAVMITLLFLTPLFHYTPLVVLSSIIIAAMLGLIDYEAVIH 438 (648)
Q Consensus 359 iaNi~~slfg~~p~~~s~srs~~~~~~G~~t~la~i~~a~i~ll~~l~l~~ll~~iP~~vLa~ili~~~~~li~~~~~~~ 438 (648)
++|+++|+|||+|++++++||++|.++|+|||++++++++++++.+++++|++++||+++||+++++++++|++.+++++
T Consensus 322 ~aNi~~~~fgg~p~~~s~srSa~n~~aGarT~la~iv~a~~~ll~ll~l~~ll~~iP~~vLa~ili~~~~~m~~~~~~~~ 401 (568)
T PRK11660 322 LGNIVAPFFGGITATAAIARSAANVRAGATSPISAVIHALLVLLALLVLAPLLSYLPLSAMAALLLMVAWNMSEAHKVVD 401 (568)
T ss_pred HHHHHHHHhCcccccchHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888887
Q ss_pred Hhc-cCccchhHHhhhhhhhhhccchhhHHHHHHHHHHHHHHHhhccceeEeeeccCCcccccCCCCCCcccCCcEEEEE
Q 006373 439 LWK-LDKFDFIVCMSAYVGVVFGSVEIGLVIAVTISLLRVLLSVARPRTFVLGNIPNSVTYRSIDQYPVAKSVPGVLILH 517 (648)
Q Consensus 439 l~~-~~~~d~~i~~~t~~~~~~~~~~~Gl~~Gv~~sl~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~ivr 517 (648)
+|| .++.|+.+|+.+++.++++|+..|+++|+++|++.+++|.+++. +.+ +.++ .++.+++.++|
T Consensus 402 ~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~Gi~~s~~~~~~~~~~~~-----~~~------~~~~---~~~~~~i~iv~ 467 (568)
T PRK11660 402 LLRHAPKDDIIVMLLCMSLTVLFDMVIAISVGIVLASLLFMRRIAEMT-----RLA------PISV---QDVPDDVLVLR 467 (568)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcc-----ccc------cccc---ccCCCcEEEEE
Confidence 776 58899999999999999999999999999999999999988754 111 1111 34457899999
Q ss_pred ecCceEEechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcCCHHH
Q 006373 518 IDAPIYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANPRSEV 597 (648)
Q Consensus 518 l~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~~~~v 597 (648)
++|+|||+|++++++++++.. ++.+++|+||++++++|+||+++|+++.+++++ |++++++++++++
T Consensus 468 ~~g~L~F~n~~~l~~~l~~~~------------~~~~~VVlD~~~V~~iDssg~~~L~~l~~~l~~-g~~l~l~~l~~~v 534 (568)
T PRK11660 468 INGPLFFAAAERLFTELESRT------------EGKRIVVLQWDAVPVLDAGGLDAFQRFVKRLPE-GCELRICNLQFQP 534 (568)
T ss_pred eCCeeeeeeHHHHHHHHHhhC------------CCCCEEEEEcCCCCcccHHHHHHHHHHHHHHHC-CCEEEEecCChHH
Confidence 999999999999999887632 247899999999999999999999999999999 9999999999999
Q ss_pred HHHHHhCCCccccCCcceecCHHHHHHHHHH
Q 006373 598 IKKLNNSKFIENIGQEWIYLTVAEAVAACNF 628 (648)
Q Consensus 598 ~~~l~~~g~~~~~~~~~if~s~~~Av~~~~~ 628 (648)
++.|+++|+.+..+.+++|+|.|||++++++
T Consensus 535 ~~~l~~~gl~~~~~~~~if~~~~~Al~~~~~ 565 (568)
T PRK11660 535 LRTLARAGIQPIPGRLAFYPTLREALADLLR 565 (568)
T ss_pred HHHHHHCCChhhcCcccccCCHHHHHHHHHh
Confidence 9999999999988888999999999999865
No 5
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=3e-46 Score=386.19 Aligned_cols=279 Identities=35% Similarity=0.673 Sum_probs=254.4
Q ss_pred HHhhhhhhHHhhchHhHHHHHHhhhHHHHHHhhhhhhhCcccccCCCchHHHHHHHHhcCCC-CchhhhHHHHHHHHHHH
Q 006373 171 LGFLRLGFVVDFLSHATIVGFMGGAATVVCLQQLKGILGLVRFTHATDLQSVMRSVFSQTSQ-WRWESGVLGCCFLLFLL 249 (648)
Q Consensus 171 lg~~~lg~l~~~lp~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~l~~l~ 249 (648)
||++|+|++.+|+|+||+.||++|+|++++.+|++.++|.+..+...+....+...++.+++ +||.++++++++++++.
T Consensus 1 lGllrlG~l~~~ip~pVi~Gf~~g~ai~I~~~Ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 80 (280)
T PF00916_consen 1 LGLLRLGFLVRFIPRPVISGFLAGIAILIIFSQLPNLLGIPVVPSHEGLFSFIRALFQLISTITNWPTLAIGLVALVFLL 80 (280)
T ss_pred CccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhccchhhhhhhhHHHHHHh
Confidence 58899999999999999999999999999999999999997433334555666666666666 58999999999999999
Q ss_pred HHhhhhcccccchhhccchhHHHHHHHHHHHHhccccCCCeEEeecCCCCCCCCCCCcCCCChhhHHHHHHHHHHHHHHH
Q 006373 250 LTRYFSKKKATFFWINAMAPLTSVILGSVLVYFTDAERHGVQVIGQLKKGLNPPSLSELDFGSPYLMTAVKTGVIIGVIA 329 (648)
Q Consensus 250 ~~~~~~~~~~~~~~~p~~~~Li~vvi~t~i~~~~~~~~~~~~~~g~ip~g~p~p~~p~~~~~~~~~~~~~~~~~~~aiv~ 329 (648)
..+++.++++++++.+.|.+++++++++++++.++.+.+++..+|++|.++|.|.+|+.+++++.+.+.++.++.+++++
T Consensus 81 ~~~~~~~~~~~~~~~~~p~~li~vv~~~~~~~~~~~~~~~v~~~~~i~~~lp~~~~p~~~~~~~~~~~~~~~a~~ia~v~ 160 (280)
T PF00916_consen 81 IIRLLPKRLPSRFWPPIPAPLIVVVLGTLLSWLFLLDKYGVAIVGEIPSGLPPPSLPSFDISWSLILDLLPTALAIAIVG 160 (280)
T ss_pred hhhhhhhhccccccccccccceeeehhhhhhhhhhhccccccccccccccCccccCcccccccccccccchhHHHHHHHH
Confidence 88888777777777778899999999999999998888889999999999999999954444567888889999999999
Q ss_pred HHHHHHHHhhhhcccCcccCCchHHHHHhhhhhhhhhcCCcccccccchhhHhhhcCCCchhHHHHHHHHHHHHHHHhhh
Q 006373 330 LAEGIAVGRSFAMFKNYHIDGNKEMVAFGMMNIAGSCTSCYLTAGPFSRSAVNFNAGCKTAVSNIVMATAVMITLLFLTP 409 (648)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~n~el~a~GiaNi~~slfg~~p~~~s~srs~~~~~~G~~t~la~i~~a~i~ll~~l~l~~ 409 (648)
++|++.++++++++++++.|.|||++++|++|+++|+|||+|++++++||.+|.++|+|||++++++++++++++++++|
T Consensus 161 ~~~s~~~~~~~~~~~~~~~d~n~El~a~G~aNi~s~~~gg~p~~~s~srs~~~~~~Ga~t~~s~~~~~~~~l~~l~~~~~ 240 (280)
T PF00916_consen 161 FIESLLIAKSIAKKTGYRIDPNQELIALGLANIVSGLFGGMPGSGSFSRSAVNYRAGARTRLSGLISALFVLLVLLFLAP 240 (280)
T ss_pred HHHHHHhhhhhcccccccCCcHHHHHHhhhccccchhhcccccccccccchHHHhcCcceeehhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhchhHHHHHHHHHHHhhccCHHHHHHHhccCccchhH
Q 006373 410 LFHYTPLVVLSSIIIAAMLGLIDYEAVIHLWKLDKFDFIV 449 (648)
Q Consensus 410 ll~~iP~~vLa~ili~~~~~li~~~~~~~l~~~~~~d~~i 449 (648)
+++|+|+|+||+++++++++++++++++.+||.+|.|+++
T Consensus 241 ~l~~iP~~~La~ili~~~~~l~~~~~~~~~~~~~~~d~~i 280 (280)
T PF00916_consen 241 LLAYIPKAVLAAILIVVGISLIDWSSLRRLWRVSKADFLI 280 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCChhheEC
Confidence 9999999999999999999999999999999999999864
No 6
>PRK10720 uracil transporter; Provisional
Probab=100.00 E-value=4.9e-31 Score=285.40 Aligned_cols=387 Identities=13% Similarity=0.100 Sum_probs=286.1
Q ss_pred CcchhhcccchhHHHHHHHhhhccccccCCCCChhhhhhhhhhHHHHHHhhhhhHHHHHHHhCCCcchhhHhhhhhhhhh
Q 006373 36 DPFRQFKNQSASRKLLLGLQYFVPILEWAPRYTFEFFKSDLLAGITIASLAVPQGISYANLANLPPILGLYSSFVPPLVY 115 (648)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~p~~~wl~~y~~~~l~~Di~aGltv~~~~iPq~~aya~laglpp~~gl~~~~~~~li~ 115 (648)
..|..+++.|..+.....+||++-|+ .+.+.+|..+ |+++...+..+-++++++
T Consensus 3 ~~~~~~~~~p~~~~~~lglQhvl~m~--------------------~~~i~~Pli~------gl~~~~~l~~sGi~TliQ 56 (428)
T PRK10720 3 RAIGVSERPPLLQTIPLSLQHLFAMF--------------------GATVLVPILF------HINPATVLLFNGIGTLLY 56 (428)
T ss_pred cccCCCCCCCHHHHHHHHHHHHHHHH--------------------HHHHHHHhhc------CCCHHHHHHHHHHHHHHH
Confidence 34555556677788999999999999 7889999854 889999999999999999
Q ss_pred hhcc-CCCccccchhhHHH-HHHHHhhhcccCCCCChhHHHHHHHHHHHHHHHHHHHHHhh--hh--hhHHhhchHhHHH
Q 006373 116 AMMG-SSKDLAVGTVAVGS-LLISSMLGKEVNPNENPKLYVQLALTATFFAGVFQASLGFL--RL--GFVVDFLSHATIV 189 (648)
Q Consensus 116 ~~~G-ss~~~~~Gp~a~~s-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Gi~~~llg~~--~l--g~l~~~lp~~Vi~ 189 (648)
.+++ ++.++..||+...- .+.. ... .+ ++.+.++.+++|+++++++++ |+ +++.+++|+.|++
T Consensus 57 ~~~~g~rlP~~~G~sfa~i~~~~~-~~~-~~---------~~~~lgav~v~Glv~ills~~~~~~g~~~l~~~fPp~v~G 125 (428)
T PRK10720 57 LFICKGKIPAYLGSSFAFISPVLL-LLP-LG---------YEVALGGFIMCGVLFCLVALIVKKAGTGWLDVLFPPAAMG 125 (428)
T ss_pred HHhccCccceEEeCcHHHHHHHHH-HHH-cc---------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChHHHH
Confidence 8876 48899999965442 2222 211 11 688899999999999999997 33 4789999999999
Q ss_pred HHHhhhHHHHHHhhhhhhhCcccccCCCchHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHhhhhcccccchhhccchh
Q 006373 190 GFMGGAATVVCLQQLKGILGLVRFTHATDLQSVMRSVFSQTSQWRWESGVLGCCFLLFLLLTRYFSKKKATFFWINAMAP 269 (648)
Q Consensus 190 Gf~~gigl~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~~~~~~~~~p~~~~ 269 (648)
.+++.+|+.+....++. .|... ...+ ..+++++.+++++++++++..++.|++.|.. +.
T Consensus 126 ~~i~lIGl~L~~~~~~~-~g~~~--~~~~-------------~~~~~~~~lalv~l~iil~~~~~~kg~~~~~-----~i 184 (428)
T PRK10720 126 AIVAVIGLELAGVAAGM-AGLLP--AEGQ-------------TPDSKTIIISMVTLAVTVLGSVLFRGFLAII-----PI 184 (428)
T ss_pred HHHHHHHHHhHHHHHhh-ccccC--CCCc-------------ccchHHHHHHHHHHHHHHHHHHHhccHHHHh-----HH
Confidence 99999999999887753 33221 1111 1456678899999888877665556654432 57
Q ss_pred HHHHHHHHHHHHhccccCCCeEEeecC-CCCCCCCCCCcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccc
Q 006373 270 LTSVILGSVLVYFTDAERHGVQVIGQL-KKGLNPPSLSELDFGSPYLMTAVKTGVIIGVIALAEGIAVGRSFAMFKNYHI 348 (648)
Q Consensus 270 Li~vvi~t~i~~~~~~~~~~~~~~g~i-p~g~p~p~~p~~~~~~~~~~~~~~~~~~~aiv~~~~~~~~~~~~~~~~~~~~ 348 (648)
++++++++++++.++.. +...+++. +.++|.+..|+ |+...+..+++.+++..++++.+..++.+..+++..++.
T Consensus 185 LigIvvG~ila~~lG~~--d~~~v~~a~~~~lP~~~~P~--fd~~~il~l~~~~lv~~~EsiG~~~a~~~~~~~~~~~~~ 260 (428)
T PRK10720 185 LIGVLVGYALSFAMGMV--DTTPIIEAHWFALPTFYTPR--FEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDP 260 (428)
T ss_pred HHHHHHHHHHHHHhcCC--CHHHhhcCccccCCCCCCCc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCc
Confidence 99999999999999753 22333322 33466555554 455556666666655555555544444443332222356
Q ss_pred CCchHHHHHhhhhhhhhhcCCcccccccchhhHhhhcCCCchhHHHHHHHHHHHHHHH--hhhhhhhchhHHHHHHHHHH
Q 006373 349 DGNKEMVAFGMMNIAGSCTSCYLTAGPFSRSAVNFNAGCKTAVSNIVMATAVMITLLF--LTPLFHYTPLVVLSSIIIAA 426 (648)
Q Consensus 349 ~~n~el~a~GiaNi~~slfg~~p~~~s~srs~~~~~~G~~t~la~i~~a~i~ll~~l~--l~~ll~~iP~~vLa~ili~~ 426 (648)
|.|||+.++|++|+++|+||++|++++..+.++...+|.++|.+..+++++++++.++ ++++++.||.||+||+.+ +
T Consensus 261 ~~~r~l~adGlatii~glfG~~p~tty~en~g~ia~T~v~sr~v~~~a~~~li~lg~~pk~~a~ia~iP~pVlgg~~i-~ 339 (428)
T PRK10720 261 GLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIIAILLSCVGKLAAAIQAIPLPVMGGVSL-L 339 (428)
T ss_pred cccchHhhhhHHHHHHHhcCCCCccccccccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-H
Confidence 8899999999999999999999999999999999999999999999999999999877 999999999999999999 5
Q ss_pred HhhccCHHHHHHHhc--cCccch---hHH-----------hhhhhhhhhccchhhHHHHHHHHHHHHHHHhhccc
Q 006373 427 MLGLIDYEAVIHLWK--LDKFDF---IVC-----------MSAYVGVVFGSVEIGLVIAVTISLLRVLLSVARPR 485 (648)
Q Consensus 427 ~~~li~~~~~~~l~~--~~~~d~---~i~-----------~~t~~~~~~~~~~~Gl~~Gv~~sl~~~~~~~~~~~ 485 (648)
.++++...+++.+|+ .+..|. .+. ..++...+..|+..|.++|++++++...+|.-|+.
T Consensus 340 ~fg~i~~~Gi~~l~~~~~~~~~~~n~~i~~~~l~~g~~~~~~~~~~~~~~gi~~g~~~ai~Lnlll~~~~~~~~~ 414 (428)
T PRK10720 340 LYGVIGASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAKVNIGAAELKGMALATIVGIGLSLIFKLISKLRPE 414 (428)
T ss_pred HHHHHHHHHHHHHHHccCCCCcccchhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcccccccCC
Confidence 999999999999965 333222 221 11222334457888888889888887765555443
No 7
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=99.97 E-value=4.3e-30 Score=278.42 Aligned_cols=324 Identities=16% Similarity=0.107 Sum_probs=249.0
Q ss_pred HHHhhhhhHHHHHHHhCCCc-------chhhHhhhhhhhhhh----hccCCCccccchhhHHHHHHHHhhhcccCCCCCh
Q 006373 82 IASLAVPQGISYANLANLPP-------ILGLYSSFVPPLVYA----MMGSSKDLAVGTVAVGSLLISSMLGKEVNPNENP 150 (648)
Q Consensus 82 v~~~~iPq~~aya~laglpp-------~~gl~~~~~~~li~~----~~Gss~~~~~Gp~a~~s~~~~~~~~~~~~~~~~~ 150 (648)
.+.+.+|..++-+. |+|+ ...++++.++++++. .+|++.++..||.......+.....++
T Consensus 10 ~~~i~~p~i~~~a~--gl~~~~~~~~i~at~l~sgi~tllq~~~~~~~G~~~P~~~g~s~a~~~~~~~~~~~~------- 80 (406)
T TIGR03173 10 AGAVAVPLIVGGAL--GLSAEQTAYLISADLFACGIATLIQTLGIGPFGIRLPVVQGVSFAAVGPMIAIGAGG------- 80 (406)
T ss_pred HHHHHHHHHHHhhc--CCCHHHHHHHHHHHHHHHHHHHHHHhccccccCCccceeecCcHHHHHHHHHHhhhh-------
Confidence 67888998887764 8888 467888889999996 689999999999765443333332222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhchHhHHHHHHhhhHHHHHHhhhhhhhCcccccCCCchHHHHHHHHhcC
Q 006373 151 KLYVQLALTATFFAGVFQASLGFLRLGFVVDFLSHATIVGFMGGAATVVCLQQLKGILGLVRFTHATDLQSVMRSVFSQT 230 (648)
Q Consensus 151 ~~~~~~~~~~~~l~Gi~~~llg~~~lg~l~~~lp~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~ 230 (648)
.++.+.++.+++|++++++|. .++++.|++|+.|++.++..+|+.+...+++++.|... ..+
T Consensus 81 --~~~~~~ga~~v~Gii~illg~-~~~~l~~~iPp~v~G~~i~~IGl~l~~~~~~~~~g~~~---~~~------------ 142 (406)
T TIGR03173 81 --GLGAIFGAVIVAGLFVILLAP-FFSKLVRFFPPVVTGTVITLIGLSLMPVAINWAAGGAG---APD------------ 142 (406)
T ss_pred --hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHhccCCC---ccc------------
Confidence 278889999999999999995 68999999999888889999999999999988765431 111
Q ss_pred CCCchhhhHHHHHHHHHHHHHhhhhcccccchhhccchhHHHHHHHHHHHHhccccCCCeEEeecCCC-CCCC---CCCC
Q 006373 231 SQWRWESGVLGCCFLLFLLLTRYFSKKKATFFWINAMAPLTSVILGSVLVYFTDAERHGVQVIGQLKK-GLNP---PSLS 306 (648)
Q Consensus 231 ~~~~~~~~~i~~~~l~~l~~~~~~~~~~~~~~~~p~~~~Li~vvi~t~i~~~~~~~~~~~~~~g~ip~-g~p~---p~~p 306 (648)
..++.++.+++++++++++.+++.|++.| .++.|+++++++++++.++..+ .+.+++.|. .+|. +..|
T Consensus 143 -~~~~~~~~l~l~~l~~~il~~~~~~~~~~-----~~aiLi~ivvg~iva~~~g~~~--~~~i~~~~~~~~P~~~~~~~P 214 (406)
T TIGR03173 143 -FGSPQNLGLALLTLVIILLLNRFGKGFLR-----SIAVLLGLVVGTIVAAALGMVD--FSGVAEAPWFALPTPFHFGAP 214 (406)
T ss_pred -ccchHHHHHHHHHHHHHHHHHHHhhhHHH-----HhHHHHHHHHHHHHHHHhcCCC--chhhccCCeeeCCCCCcCCCC
Confidence 13455677888888877776655554332 2388999999999999987532 222232221 2332 2334
Q ss_pred cCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccc---CCchHHHHHhhhhhhhhhcCCcccccccchhhHhh
Q 006373 307 ELDFGSPYLMTAVKTGVIIGVIALAEGIAVGRSFAMFKNYHI---DGNKEMVAFGMMNIAGSCTSCYLTAGPFSRSAVNF 383 (648)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~aiv~~~~~~~~~~~~~~~~~~~~---~~n~el~a~GiaNi~~slfg~~p~~~s~srs~~~~ 383 (648)
++ +...+ ...+.++++++.|+++..++.++..+++. +.|||+.++|++|+++|+||++|++++..+++++.
T Consensus 215 ~f--~~~~~----~~~~~~~lv~~~esig~~~a~~~~~g~~~~~~~~~~~l~~~Gi~~i~aglfG~~p~t~~~~~~~~~~ 288 (406)
T TIGR03173 215 TF--DLVAI----LTMIIVYLVSMVETTGDFLALGEITGRPITEKDLAGGLRADGLGSALGGLFNTFPYTSFSQNVGLVQ 288 (406)
T ss_pred ee--CHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhccchHHhccHHHHHHHHhCCCCCcchhhhHHHHH
Confidence 33 33333 33445678888888888888877776654 45799999999999999999999998776778999
Q ss_pred hcCCCchhHHHHHHHHHHHHHHH--hhhhhhhchhHHHHHHHHHHHhhccCHHHHHHHhccCccch
Q 006373 384 NAGCKTAVSNIVMATAVMITLLF--LTPLFHYTPLVVLSSIIIAAMLGLIDYEAVIHLWKLDKFDF 447 (648)
Q Consensus 384 ~~G~~t~la~i~~a~i~ll~~l~--l~~ll~~iP~~vLa~ili~~~~~li~~~~~~~l~~~~~~d~ 447 (648)
.+|++||+++++++++++++.++ ++++++++|++++|+++++ .++++...+++.+++.+++|.
T Consensus 289 ~tg~~sr~~~~~~~~~lil~~l~~~~~~l~~~iP~~vlgg~~l~-~~~~i~~~g~~~l~~~~~~~~ 353 (406)
T TIGR03173 289 LTGVKSRYVVAAAGVILVLLGLFPKLAALVASIPQPVLGGAGLV-MFGMVAASGIRILSKVDFDRR 353 (406)
T ss_pred HhCCCchHhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHHHHHHHHHhCcccCc
Confidence 99999999999999999998887 8999999999999998875 999999999999988776655
No 8
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=99.97 E-value=1.3e-29 Score=274.31 Aligned_cols=343 Identities=16% Similarity=0.152 Sum_probs=268.2
Q ss_pred chhHHHHHHHhhhccccccCCCCChhhhhhhhhhHHHHHHhhhhhHHHHHHHhCCCcc-------hhhHhhhhhhhhhhh
Q 006373 45 SASRKLLLGLQYFVPILEWAPRYTFEFFKSDLLAGITIASLAVPQGISYANLANLPPI-------LGLYSSFVPPLVYAM 117 (648)
Q Consensus 45 ~~~~~~~~~~~~~~p~~~wl~~y~~~~l~~Di~aGltv~~~~iPq~~aya~laglpp~-------~gl~~~~~~~li~~~ 117 (648)
|.++.....+||++-++ .+.+.+|..++-+. +++. ..+..+.++++++++
T Consensus 3 ~~~~~~~lglQh~l~~~--------------------~~~i~~p~iv~~~~---l~~~~~~~li~at~~~sgi~Tllq~~ 59 (415)
T TIGR00801 3 PFLQTLVLGLQHLLAMF--------------------GGTVLVPLLVGLAP---LSAEQTQYLVSISLLTSGIGTLLQLF 59 (415)
T ss_pred CHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHhccc---CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55677888999999999 89999999988766 4543 578888999999998
Q ss_pred ccCCC---ccccchh-hHHHHHHHHhhhcccCCCCChhHHHHHHHHHHHHHHHHHHHHHhh--hh--hhHHhhchHhHHH
Q 006373 118 MGSSK---DLAVGTV-AVGSLLISSMLGKEVNPNENPKLYVQLALTATFFAGVFQASLGFL--RL--GFVVDFLSHATIV 189 (648)
Q Consensus 118 ~Gss~---~~~~Gp~-a~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Gi~~~llg~~--~l--g~l~~~lp~~Vi~ 189 (648)
.+..+ +..+|+. +.++...... .+.+ ++.+.+..+++|+++++++++ |+ +++.+++|+.|.+
T Consensus 60 ~~~~~~~lp~~~G~sfa~i~~~~~~~-~~~~---------~~~~~g~~i~~gl~~~ll~~~~~~~~~~~i~~~~Pp~v~g 129 (415)
T TIGR00801 60 RTGGQIGLPSYLGSSFAFVSPMIAIG-SGLG---------IPAIMGALIATGLVYTLLSLLIKKLGPRWLMKLFPPVVTG 129 (415)
T ss_pred hhcCceeeeeeecCcHHHHHHHHHHH-hccC---------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchhHH
Confidence 87766 8888886 4444332221 1222 677889999999999999985 43 5679999999999
Q ss_pred HHHhhhHHHHHHhhhhhhhCcccccCCCchHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHhhhhcccccchhhccchh
Q 006373 190 GFMGGAATVVCLQQLKGILGLVRFTHATDLQSVMRSVFSQTSQWRWESGVLGCCFLLFLLLTRYFSKKKATFFWINAMAP 269 (648)
Q Consensus 190 Gf~~gigl~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~~~~~~~~~p~~~~ 269 (648)
+++.++|+.+...+++++.|....+...++ .++.++.+++.+++++++.+++.|++.| .++.
T Consensus 130 ~iv~~IGl~L~~i~l~~~~g~~~~~~~~~~-------------~~~~~~~vg~~~l~~~vl~~~~~~g~~~-----~~ai 191 (415)
T TIGR00801 130 PVVMLIGLSLIPVAVKMAAGGEAAMSSATY-------------GSLENLGVAFVVLALIILLNRFGKGFLK-----SISI 191 (415)
T ss_pred HhHHHHHHHHHHHHHHHhccCCCccccccc-------------CchhhHHHHHHHHHHHHHHHHHHhhHHH-----HHHH
Confidence 999999999999999998776431111111 3456688999998888777766555433 2388
Q ss_pred HHHHHHHHHHHHhccccCCCeEEeecCCC-CCCCCCCCcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccc
Q 006373 270 LTSVILGSVLVYFTDAERHGVQVIGQLKK-GLNPPSLSELDFGSPYLMTAVKTGVIIGVIALAEGIAVGRSFAMFKNYHI 348 (648)
Q Consensus 270 Li~vvi~t~i~~~~~~~~~~~~~~g~ip~-g~p~p~~p~~~~~~~~~~~~~~~~~~~aiv~~~~~~~~~~~~~~~~~~~~ 348 (648)
++++++++++++.++..+. ..+.+.|. ++|.|..|..+|+.. .+...+.++++++.|+++..++++++.|++.
T Consensus 192 Ligiv~g~i~a~~lg~~~~--~~v~~~~~~~lP~~~~~g~~f~~~----~~~~~~~i~lv~~~es~g~~~a~a~~~g~~~ 265 (415)
T TIGR00801 192 LIGILVGYILALFMGIVDF--SPVIDAPWFSLPTPFTFGPSFEWP----AILTMLPVAIVSLVESIGDITATADVSGRDL 265 (415)
T ss_pred HHHHHHHHHHHHHcCCccc--hhhccCcccccCCccCCCceecHH----HHHHHHHHHHHHHHHhhhHHHHHHHHhCCCC
Confidence 9999999999999875322 11233332 455544443345543 3344456788889999999888888777755
Q ss_pred ----CCchHHHHHhhhhhhhhhcCCcccccccchhhHhhhcCCCchhHHHHHHHHHHHHHHH--hhhhhhhchhHHHHHH
Q 006373 349 ----DGNKEMVAFGMMNIAGSCTSCYLTAGPFSRSAVNFNAGCKTAVSNIVMATAVMITLLF--LTPLFHYTPLVVLSSI 422 (648)
Q Consensus 349 ----~~n~el~a~GiaNi~~slfg~~p~~~s~srs~~~~~~G~~t~la~i~~a~i~ll~~l~--l~~ll~~iP~~vLa~i 422 (648)
+.|||+.++|++|+++|+||++|.+++.+|++++..+|++||++..+++++++++.++ ++++++++|.+++|++
T Consensus 266 ~~~~~~~r~l~adGl~~i~aglfG~~p~t~~sen~g~~~~T~~~sr~~~~~~a~~~i~~~l~pk~~~l~~~iP~~vlgg~ 345 (415)
T TIGR00801 266 SGDPRLHRGVLADGLATLLAGLFGGFPNTTFAQNIGVIALTRVASRWVIVGAAVILIALGFFPKIAALITSIPSPVLGGA 345 (415)
T ss_pred CCCccccchHHHhhHHHHHHHhcCCCCCcchhhhheeeeecCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3579999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHhhccCHHHHHHHhccCcc
Q 006373 423 IIAAMLGLIDYEAVIHLWKLDKF 445 (648)
Q Consensus 423 li~~~~~li~~~~~~~l~~~~~~ 445 (648)
++ +.++++...+++.+++.+.+
T Consensus 346 ~l-~~~~~i~~~gi~~l~~~~~~ 367 (415)
T TIGR00801 346 SI-VMFGMIAASGIRILIRNKLD 367 (415)
T ss_pred HH-HHHHHHHHHHHHHHHhCccC
Confidence 99 59999999999999887655
No 9
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=99.97 E-value=5.5e-29 Score=262.68 Aligned_cols=386 Identities=16% Similarity=0.103 Sum_probs=298.7
Q ss_pred ccchhHHHHHHHhhhccccccCCCCChhhhhhhhhhHHHHHHhhhhhHHHHHHHhCCCcc-------hhhHhhhhhhhhh
Q 006373 43 NQSASRKLLLGLQYFVPILEWAPRYTFEFFKSDLLAGITIASLAVPQGISYANLANLPPI-------LGLYSSFVPPLVY 115 (648)
Q Consensus 43 ~~~~~~~~~~~~~~~~p~~~wl~~y~~~~l~~Di~aGltv~~~~iPq~~aya~laglpp~-------~gl~~~~~~~li~ 115 (648)
+.|..+.....+||+|.|+ .+.+.+|..++.+. +++++ +.+.++-++++++
T Consensus 12 ~~~~~~~~~lglQH~lamf--------------------g~~V~VPlivg~a~--~l~~~~~~~Lis~~l~~~GiaTllq 69 (451)
T COG2233 12 RLPLGKLLLLGLQHLLAMF--------------------GATVLVPLLVGLAL--GLSAEDTAYLISADLLASGIGTLLQ 69 (451)
T ss_pred cCChHHHHHHHHHHHHHHH--------------------hcchHhhHHhccCC--CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778889999999999 89999999887766 66654 5699999999999
Q ss_pred hh----ccCCCccccchhhHHHHHHHHhhhcccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHhhchHhHHHH
Q 006373 116 AM----MGSSKDLAVGTVAVGSLLISSMLGKEVNPNENPKLYVQLALTATFFAGVFQASLGFLRLG-FVVDFLSHATIVG 190 (648)
Q Consensus 116 ~~----~Gss~~~~~Gp~a~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Gi~~~llg~~~lg-~l~~~lp~~Vi~G 190 (648)
.+ +|+.-+...|.+......+..+..+++ .-.+.+.+..+.+|++.++++.+ ++ |+.|++|+.|++-
T Consensus 70 ~~~~~~~g~~lP~~lG~sFafi~p~i~~~~~~g-------~~~~~~~G~ii~ag~~~~li~~~-~~~~l~rlfPPvVtG~ 141 (451)
T COG2233 70 LLGTGPGGSGLPSYLGSSFAFVAPMIAIGGTTG-------DGIAALLGGIIAAGLVYFLISPI-VKIRLARLFPPVVTGP 141 (451)
T ss_pred HhhccCcccCCCeeEechHHHHHHHHHHHhccC-------CchHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCceEEe
Confidence 87 666888888886554443344444332 11567788999999999999987 45 9999999999999
Q ss_pred HHhhhHHHHHHhhhhhhhCcccccCCCchHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHhhhhcccccchhhccchhH
Q 006373 191 FMGGAATVVCLQQLKGILGLVRFTHATDLQSVMRSVFSQTSQWRWESGVLGCCFLLFLLLTRYFSKKKATFFWINAMAPL 270 (648)
Q Consensus 191 f~~gigl~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~~~~~~~~~p~~~~L 270 (648)
++.-+|+.++...++.+.|........++ .+..++.+++.+++++++..++.|.+-|.. +.|
T Consensus 142 Vi~~IGlsL~~vai~~~~G~~~~~~~~~~-------------~~~~~l~la~~tl~~il~~~~f~~g~~~~i-----~IL 203 (451)
T COG2233 142 VVLVIGLSLAPVAINMAGGGPGAAGNPDF-------------GSLENLGLALVTLLIILLINRFGKGFLRRI-----PIL 203 (451)
T ss_pred EeeeehhhhHHHHHHHhhCCCCCCCCccc-------------CchhHHHHHHHHHHHHHHHHHHhhhHHHHH-----HHH
Confidence 99999999999999999987632222222 456678999999999888887777766543 789
Q ss_pred HHHHHHHHHHHhccccCCCeEEeecCCC-CCCCCCCCcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcccC
Q 006373 271 TSVILGSVLVYFTDAERHGVQVIGQLKK-GLNPPSLSELDFGSPYLMTAVKTGVIIGVIALAEGIAVGRSFAMFKNYHID 349 (648)
Q Consensus 271 i~vvi~t~i~~~~~~~~~~~~~~g~ip~-g~p~p~~p~~~~~~~~~~~~~~~~~~~aiv~~~~~~~~~~~~~~~~~~~~~ 349 (648)
+++++|+++++.+|.- +.+.+.+-|. ++|.|..+...|++..+..+++++++..++.+.+..++++...++...+.+
T Consensus 204 iGlv~G~~la~~~G~v--df~~v~~a~w~~~P~~~~fg~~F~~~ail~m~~v~iV~~~E~~G~i~A~~~itg~~~~~~~~ 281 (451)
T COG2233 204 IGLVVGYLLALFMGMV--DFSGVAEAPWFALPTPFYFGMAFDWGAILTMLPVAIVTIVEHTGDITATGEITGRDLDGKPR 281 (451)
T ss_pred HHHHHHHHHHHHhCCc--CccccccCceeeCCcccCCCeeecHHHHHHHHHHHHHHHHHHhhhhhhHHhHhCCcCccCcc
Confidence 9999999999999832 2222333332 366666554577777788888887777777777777777766555555578
Q ss_pred CchHHHHHhhhhhhhhhcCCcccccccchhhHhhhcCCCchhHHHHHHHHHHHHHHH--hhhhhhhchhHHHHHHHHHHH
Q 006373 350 GNKEMVAFGMMNIAGSCTSCYLTAGPFSRSAVNFNAGCKTAVSNIVMATAVMITLLF--LTPLFHYTPLVVLSSIIIAAM 427 (648)
Q Consensus 350 ~n~el~a~GiaNi~~slfg~~p~~~s~srs~~~~~~G~~t~la~i~~a~i~ll~~l~--l~~ll~~iP~~vLa~ili~~~ 427 (648)
.+|.++++|++++++|+||++|.|++.+|.++...+|.+||+....++++++++.++ ++.+++.||.+|+||+.++ .
T Consensus 282 l~rg~~aDGlat~iag~fg~~p~TtfaqNiGvv~lT~v~Sr~V~~~aavili~lgl~pk~~al~~sIP~pVlGGa~iv-m 360 (451)
T COG2233 282 LRRGLLADGLATLIAGLFGGFPNTTFAQNIGVVALTGVYSRYVIAGAAVILILLGLFPKFGALIQSIPSPVLGGAMLV-L 360 (451)
T ss_pred cccceeeccHHHHHHHhcCCCCCCchhhceeeeeeccCChhHHHHHHHHHHHHHHhhHHHHHHHHhCChhhhhHHHHH-H
Confidence 899999999999999999999999999999999999999999999999999999988 9999999999999999888 9
Q ss_pred hhccCHHHHHHHhccCccc-h-hHHhhhhhhhhhcc------------------chhhHHHHHHHHHHHHHH
Q 006373 428 LGLIDYEAVIHLWKLDKFD-F-IVCMSAYVGVVFGS------------------VEIGLVIAVTISLLRVLL 479 (648)
Q Consensus 428 ~~li~~~~~~~l~~~~~~d-~-~i~~~t~~~~~~~~------------------~~~Gl~~Gv~~sl~~~~~ 479 (648)
++++...+++.+-|.+.++ . ...+++....+..| ...|+..|...++++-++
T Consensus 361 FG~Ia~sGir~l~~~~~~~~~~Nl~IvAvsl~~Gig~~~~p~~~~~~p~~~~~l~~sGia~g~i~AIvLNll 432 (451)
T COG2233 361 FGMIAASGIRILIRNKVDRSRRNLLIVAVSLGLGIGVGAVPEVFLQLPAWLRPLLSSGIALGTLTAIVLNLL 432 (451)
T ss_pred HHHHHHHHHHHHHhcccccCccceeeehHHHHhCcchhcCchhhhhCcHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999998887765433 2 44444433333332 345677776666665443
No 10
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=99.96 E-value=1.8e-26 Score=247.84 Aligned_cols=364 Identities=17% Similarity=0.125 Sum_probs=269.1
Q ss_pred chhHHHHHHHhhhccccccCCCCChhhhhhhhhhHHHHHHhhhhhHHHHHHHhCCCcc-------hhhHhhhhhhhhhhh
Q 006373 45 SASRKLLLGLQYFVPILEWAPRYTFEFFKSDLLAGITIASLAVPQGISYANLANLPPI-------LGLYSSFVPPLVYAM 117 (648)
Q Consensus 45 ~~~~~~~~~~~~~~p~~~wl~~y~~~~l~~Di~aGltv~~~~iPq~~aya~laglpp~-------~gl~~~~~~~li~~~ 117 (648)
...+.....+||++-++ .+.+.+|..++-+. |+++. ..+..+-+++++.++
T Consensus 6 ~~~~~~~lglQhvl~m~--------------------~~~i~vPliva~a~--gl~~~~~~~li~~~l~~sGIaTllQ~~ 63 (433)
T PRK11412 6 VSRESLLSGFQWFFFIF--------------------CNTVVVPPTLLSAF--QLPQSSLLTLTQYAFLATALACFAQAF 63 (433)
T ss_pred chHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566788899999998 88999999998875 88885 568888899999999
Q ss_pred ccCCCccccchhhHHHHHHHHhhhcccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHhhchHhHHHHHHhhhH
Q 006373 118 MGSSKDLAVGTVAVGSLLISSMLGKEVNPNENPKLYVQLALTATFFAGVFQASLGFLR-LGFVVDFLSHATIVGFMGGAA 196 (648)
Q Consensus 118 ~Gss~~~~~Gp~a~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Gi~~~llg~~~-lg~l~~~lp~~Vi~Gf~~gig 196 (648)
+|++.++..||+...-..+-++.......+.......+...+..+++|++++++|.++ ++++.|++|+.|.+-++.-+|
T Consensus 64 ~G~rlPiv~G~Sf~~~~~~~~i~~~~~~~g~~~~~~~g~l~g~~i~~g~~~~~lg~~~~~~~l~r~fpPvV~G~vv~lIG 143 (433)
T PRK11412 64 CGHRRAIMEGPGGLWWGTILTITLGEASRGTPINDIATSLAVGIALSGVVTILIGFSGLGHRLARLFTPMVMVVFMLLLG 143 (433)
T ss_pred cCCCCeeeeCCchHHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhHhHHHHH
Confidence 9999999999976653222222211100001011112223446889999999999988 699999999999999999999
Q ss_pred HHHHHhhhhhhhCcccccCCCchHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHhhhhcccccchhhccchhHHHHHHH
Q 006373 197 TVVCLQQLKGILGLVRFTHATDLQSVMRSVFSQTSQWRWESGVLGCCFLLFLLLTRYFSKKKATFFWINAMAPLTSVILG 276 (648)
Q Consensus 197 l~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~~~~~~~~~p~~~~Li~vvi~ 276 (648)
+.++...++++.|.+.. ...++ ++++...+.+++.++++++...++.|++.|.+ +.|+++++|
T Consensus 144 lsL~~~a~~~~~G~~~~-~~~~~-----------~~~~~~~~~~a~~~l~~il~~~~~~~g~~~~~-----svLiGiv~G 206 (433)
T PRK11412 144 AQLTTIFFKGMLGLPFG-IADPN-----------GKIQLPPFGLSVAVMCLVLAMIIFLPQRIARY-----SLLVGTIVG 206 (433)
T ss_pred HhhHHHHHHHhcCCCcc-Ccccc-----------cccchHHHHHHHHHHHHHHHHHHHhhhHHHHH-----HHHHHHHHH
Confidence 99999999999886211 00111 11233456778888877777776667665544 789999999
Q ss_pred HHHHH-hccccCCCeEEeecCCC-CCCCCCCCcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcccCCchHH
Q 006373 277 SVLVY-FTDAERHGVQVIGQLKK-GLNPPSLSELDFGSPYLMTAVKTGVIIGVIALAEGIAVGRSFAMFKNYHIDGNKEM 354 (648)
Q Consensus 277 t~i~~-~~~~~~~~~~~~g~ip~-g~p~p~~p~~~~~~~~~~~~~~~~~~~aiv~~~~~~~~~~~~~~~~~~~~~~n~el 354 (648)
++++. .++. +...+++.+. .+| +..|. +|++..+..++..+++..++...+..++++..+++..++.+.+|.+
T Consensus 207 ~v~a~~~~g~---d~~~v~~a~w~~~p-fG~P~-~F~~~~il~~~~~~lv~~~e~iG~~~a~~~~~~~~~~~~~~l~rgi 281 (433)
T PRK11412 207 WILWAFCFPS---SHSLSGELHWQWFP-LGSGG-ALEPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSF 281 (433)
T ss_pred HHHHHHHhCC---CcchhccCCceeec-CCCCC-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccch
Confidence 99854 5554 2222233321 122 23342 3555666666666666666666666666665444333356889999
Q ss_pred HHHhhhhhhhhhcCCcccccccchhhHhhhcCCCchhHHHHHHHHHHHHHHH--hhhhhhhchhHHHHHHHHHHHhhccC
Q 006373 355 VAFGMMNIAGSCTSCYLTAGPFSRSAVNFNAGCKTAVSNIVMATAVMITLLF--LTPLFHYTPLVVLSSIIIAAMLGLID 432 (648)
Q Consensus 355 ~a~GiaNi~~slfg~~p~~~s~srs~~~~~~G~~t~la~i~~a~i~ll~~l~--l~~ll~~iP~~vLa~ili~~~~~li~ 432 (648)
.++|++|+++|+||++|.+++.+|.++...+|.+||.....++++++++.++ ++.++..||.||+||+.++ .++++.
T Consensus 282 ~~dGi~s~laglfg~~p~tt~sqNvGvi~~TgV~SR~v~~~aa~ilillgl~PK~~alia~IP~pVlGg~~~~-~Fg~I~ 360 (433)
T PRK11412 282 VATGFMTLITVPLAVIPFSPFVSSIGLLTQTGDYRRRSFIYGSVMCLLVALIPALTRLFCSIPLPVSSAVMLV-SYLPLL 360 (433)
T ss_pred hhccHHHHHHHhcCCCCCCchhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHH
Confidence 9999999999999999999999999999999999999999999999999988 9999999999999999988 888888
Q ss_pred HHHHHHHhccCccchhHHhhh
Q 006373 433 YEAVIHLWKLDKFDFIVCMSA 453 (648)
Q Consensus 433 ~~~~~~l~~~~~~d~~i~~~t 453 (648)
..+++.+.|.+.++....+++
T Consensus 361 ~~Gi~~l~~~~~~~rn~~ivg 381 (433)
T PRK11412 361 GSALVFSQQITFTARNIYRLA 381 (433)
T ss_pred HHHHHHHHhCCCCcccchhhH
Confidence 888888888776666555444
No 11
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=99.96 E-value=1.3e-26 Score=250.71 Aligned_cols=344 Identities=15% Similarity=0.177 Sum_probs=250.1
Q ss_pred CcchhhcccchhHHHHHHHhhhccccccCCCCChhhhhhhhhhHHHHHHhhhhhHHHHHHHhCCCcchhhHhhhhhhhhh
Q 006373 36 DPFRQFKNQSASRKLLLGLQYFVPILEWAPRYTFEFFKSDLLAGITIASLAVPQGISYANLANLPPILGLYSSFVPPLVY 115 (648)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~p~~~wl~~y~~~~l~~Di~aGltv~~~~iPq~~aya~laglpp~~gl~~~~~~~li~ 115 (648)
..|..++++|..+.....+||++-|+ .+.+.+|..+ |+++...+.++.++++++
T Consensus 19 ~~~~~d~~~p~~~~~~~GlQh~lam~--------------------~~~v~~Plil------gl~~~~tl~~sGi~TllQ 72 (429)
T TIGR03616 19 HPVAPDERLPAAQTIVMGLQHAVAMF--------------------GATVLMPLLM------GFDPNLTILMSGIGTLLF 72 (429)
T ss_pred cccCCCCCCCHHHHHHHHHHHHHHHH--------------------HHHHHHHHHh------CCCHhHHHHHHHHHHHHH
Confidence 34555666677888999999999998 7888888876 588888999999999999
Q ss_pred h-hccCCCccccchhhHHHHHHHHhhhcccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhh----hhHHhhchHhHHHH
Q 006373 116 A-MMGSSKDLAVGTVAVGSLLISSMLGKEVNPNENPKLYVQLALTATFFAGVFQASLGFLRL----GFVVDFLSHATIVG 190 (648)
Q Consensus 116 ~-~~Gss~~~~~Gp~a~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Gi~~~llg~~~l----g~l~~~lp~~Vi~G 190 (648)
. .+|++.++..|+++.....+..... .. ..+++.+++.+.++++++|++++++|++++ +++.|++|+.|.+-
T Consensus 73 ~~~~G~rlP~v~G~sf~f~~~~~~~~~-~~--~~~~~~~~~~a~ga~iv~G~i~~llg~~~~~~~~~~l~r~fpPvV~G~ 149 (429)
T TIGR03616 73 FLITGGRVPSYLGSSAAFVGAVIAATG-YN--GQGTNPNIALALGGIIACGLVYAAIGLVVMRTGTRWIERLMPPVVTGA 149 (429)
T ss_pred HHHhCCCceeEEcCcHHHHHHHHHHHh-hc--ccCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCcHHHHH
Confidence 6 6899999999997665443332211 11 111223467888999999999999999865 67889999999999
Q ss_pred HHhhhHHHHHHhhhhhhhCcccccCCCchHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHhhhhcccccchhhccchhH
Q 006373 191 FMGGAATVVCLQQLKGILGLVRFTHATDLQSVMRSVFSQTSQWRWESGVLGCCFLLFLLLTRYFSKKKATFFWINAMAPL 270 (648)
Q Consensus 191 f~~gigl~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~~~~~~~~~p~~~~L 270 (648)
.+..+|+.++...++...|. ++ .+|. ++++++.+++...+.|++.|.. +.|
T Consensus 150 vv~lIGlsL~~vg~~~~~~~-------~~-------------~~~~----al~tl~~i~l~~l~~~~~l~~~-----avL 200 (429)
T TIGR03616 150 VVMAIGLNLAPIAVKSVSAS-------GF-------------DSWM----AVLTILCIGAVAVFTRGMLQRL-----LIL 200 (429)
T ss_pred HHHHHHHHHHHHHHHhcccc-------cc-------------ccHH----HHHHHHHHHHHHHHHHHHHHHH-----HHH
Confidence 99999999998777753221 11 1121 3333333333333444443332 789
Q ss_pred HHHHHHHHHHHhc----ccc-CCCeEEe-ecCCCCCCCCCCCcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 006373 271 TSVILGSVLVYFT----DAE-RHGVQVI-GQLKKGLNPPSLSELDFGSPYLMTAVKTGVIIGVIALAEGIAVGRSFAMFK 344 (648)
Q Consensus 271 i~vvi~t~i~~~~----~~~-~~~~~~~-g~ip~g~p~p~~p~~~~~~~~~~~~~~~~~~~aiv~~~~~~~~~~~~~~~~ 344 (648)
+++++|+++++.+ +.. ..+.+.+ +.-+-++|++..|. |+...+..+++ .+++++.|+++..++.++..
T Consensus 201 iGivvG~iva~~l~~~~g~~~~vd~s~v~~a~~~~lP~~~~p~--f~~~~il~~~~----~~lv~~~esiG~~~a~~~~~ 274 (429)
T TIGR03616 201 VGLIAAYLAYFILTNVFGLGKAVDFSPISQAAWFGLPNFHTPV--FNANAMLLIAP----VALILVAENLGHFKAVAGMT 274 (429)
T ss_pred HHHHHHHHHHHHHhhhcCCCccccCcccccCccccCCcCCCce--EcHHHHHHHHH----HHHHHHHHhhHHHHHHHHHh
Confidence 9999999998865 221 1223322 22222466555554 44444444444 45566667666666666655
Q ss_pred CcccC--CchHHHHHhhhhhhhhhcCCcccccccchhhHhhhcCCCchhHHHHHHHHHHHHHHH--hhhhhhhchhHHHH
Q 006373 345 NYHID--GNKEMVAFGMMNIAGSCTSCYLTAGPFSRSAVNFNAGCKTAVSNIVMATAVMITLLF--LTPLFHYTPLVVLS 420 (648)
Q Consensus 345 ~~~~~--~n~el~a~GiaNi~~slfg~~p~~~s~srs~~~~~~G~~t~la~i~~a~i~ll~~l~--l~~ll~~iP~~vLa 420 (648)
+++.| .||++.++|++|+++|+||+.|.+.+..+.++...+|..||.....++++++++.++ ++.+++.||.||+|
T Consensus 275 ~~~~~~~i~r~l~adGl~t~~agl~g~~p~tt~~en~g~i~~T~v~SR~v~~~a~~~lillgl~Pk~~al~~~IP~pVlg 354 (429)
T TIGR03616 275 GRNLDPYMGRAFVGDGLATMLSGSVGGTGVTTYAENIGVMAVTKVYSTLVFVAAAVFAILLGFSPKFGALIHTIPVAVLG 354 (429)
T ss_pred CCCCCchhccchhhhhHHHHHHHhcCCCCCcceeeeeeeeeecCcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 55544 489999999999999999999999999999999999999999999999998888876 77799999999999
Q ss_pred HHHHHHHhhccCHHHHHHH--hccCc
Q 006373 421 SIIIAAMLGLIDYEAVIHL--WKLDK 444 (648)
Q Consensus 421 ~ili~~~~~li~~~~~~~l--~~~~~ 444 (648)
|+++ +.++++...+++.+ .+.+.
T Consensus 355 G~~i-~~fg~i~~~Gi~~l~~~~~d~ 379 (429)
T TIGR03616 355 GASI-VVFGLIAVAGARIWVQNKVDL 379 (429)
T ss_pred HHHH-HHHHHHHHHHHHHHHhccCCc
Confidence 9999 59999999999844 34443
No 12
>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism]
Probab=99.95 E-value=1.3e-25 Score=235.22 Aligned_cols=384 Identities=16% Similarity=0.216 Sum_probs=291.9
Q ss_pred HHhhhccccccCCCCChhhhhhhhhhHHHHHHh------hhhhHHHHHHHhCCCcc----hhhHhhhhhhhhhhhccCCC
Q 006373 53 GLQYFVPILEWAPRYTFEFFKSDLLAGITIASL------AVPQGISYANLANLPPI----LGLYSSFVPPLVYAMMGSSK 122 (648)
Q Consensus 53 ~~~~~~p~~~wl~~y~~~~l~~Di~aGltv~~~------~iPq~~aya~laglpp~----~gl~~~~~~~li~~~~Gss~ 122 (648)
.++++|...+ +.++.+.|++||+|+.+. ..|+.++- +|+|.. .....++++++..+++.. .
T Consensus 5 ~~~~~F~l~~-----~~t~vrtEiiAGlTTFltM~YIl~VnP~IL~~---ag~~~~av~~AT~l~a~~gs~~mgl~An-~ 75 (436)
T COG2252 5 DLDRFFKLKE-----HGTTVRTEVIAGLTTFLTMAYIVFVNPQILGA---AGMPVGAVFVATCLAAAIGSIAMGLYAN-L 75 (436)
T ss_pred HHHHHhCccc-----cCchHHHHHHHHHHHHHHHHHhheecHHHHHh---cCCCchhHHHHHHHHHHHHHHHHHHHHc-C
Confidence 3455565554 556799999999999973 33444432 466643 345567788888888855 6
Q ss_pred ccccch-hhHHHHHHHHhhhcccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHhhchHhHHHHHHhhhHHHHH
Q 006373 123 DLAVGT-VAVGSLLISSMLGKEVNPNENPKLYVQLALTATFFAGVFQASLGFLRL-GFVVDFLSHATIVGFMGGAATVVC 200 (648)
Q Consensus 123 ~~~~Gp-~a~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Gi~~~llg~~~l-g~l~~~lp~~Vi~Gf~~gigl~i~ 200 (648)
|+.++| .+..+....+++...+ ..|+.+.+++|++|+++++++++++ .|+++.+|+++..+..+|+|++|.
T Consensus 76 P~alapgmglnAfFaftvv~~~g-------i~wq~AL~aVF~sGiif~ils~t~iR~~ii~~IP~~lk~ai~aGIGlFia 148 (436)
T COG2252 76 PIALAPGMGLNAFFAFTVVLGMG-------LSWQVALGAVFLSGIIFLLLSLTGIREWIINAIPRSLKLAIGAGIGLFIA 148 (436)
T ss_pred chhhcchhhHHHHHHHHHHHhcC-------CcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 688887 6777777778777664 2289999999999999999999998 566999999999999999999999
Q ss_pred HhhhhhhhCcccccCCCchHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHhhhhcccccchhhccchhHHHHHHHHHHH
Q 006373 201 LQQLKGILGLVRFTHATDLQSVMRSVFSQTSQWRWESGVLGCCFLLFLLLTRYFSKKKATFFWINAMAPLTSVILGSVLV 280 (648)
Q Consensus 201 ~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~~~~~~~~~p~~~~Li~vvi~t~i~ 280 (648)
.-.++ -.|+-..+. . ....+++.+.+.++++++.+++...... +|.+. +.+++++..++++
T Consensus 149 ~IgL~-~~Givv~~~-~--------tlv~LG~~~~p~vll~i~G~~l~~~L~~--~~i~G-------aili~i~~~t~~g 209 (436)
T COG2252 149 LIGLK-NAGIVVANP-A--------TLVALGDFTSPGVLLAILGLLLIIVLVS--RKIKG-------AILIGILVTTILG 209 (436)
T ss_pred HHHHh-hCCeEEecC-c--------ceEEeecCCCchHHHHHHHHHHHHHHHH--hhccH-------hhhHHHHHHHHHH
Confidence 98888 445521111 1 1233445555667777777766655543 45554 6789999999999
Q ss_pred HhccccCCCeEEeecCCCCCCCCCCCcCCCCh-hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC------cccCCchH
Q 006373 281 YFTDAERHGVQVIGQLKKGLNPPSLSELDFGS-PYLMTAVKTGVIIGVIALAEGIAVGRSFAMFKN------YHIDGNKE 353 (648)
Q Consensus 281 ~~~~~~~~~~~~~g~ip~g~p~p~~p~~~~~~-~~~~~~~~~~~~~aiv~~~~~~~~~~~~~~~~~------~~~~~n~e 353 (648)
+.+|.....-...+..|+-. |.+...|+.. ......++..+....+.++|++++..+++++.| +..+.+|.
T Consensus 210 ~~~g~~~~~~~~~~~~p~~~--~~~~~~d~~~~~~~~~~~~~if~f~~~~~FD~~GTl~gv~~~ag~~~~~g~~~~~~~a 287 (436)
T COG2252 210 IILGIDVHFGGLVGAPPSLS--PIFGQLDLSGNLSLAAFAPVIFTFFFVDLFDTLGTLIGVASKAGLLDKNGKMPRIGKA 287 (436)
T ss_pred HHhcccccccccccCCCCcc--chhhHhhhccchhhHHHHHHHHHHHHHHHhcchHHHHHHHHhcCCcCCCCCccccchH
Confidence 99974322211133333322 2223444443 334455667778888999999988887776533 23578999
Q ss_pred HHHHhhhhhhhhhcCCcccccccchhhHhhhcCCCchhHHHHHHHHHHHHHHHhhhhhhhchhHHHHHHHHHHHhhccCH
Q 006373 354 MVAFGMMNIAGSCTSCYLTAGPFSRSAVNFNAGCKTAVSNIVMATAVMITLLFLTPLFHYTPLVVLSSIIIAAMLGLIDY 433 (648)
Q Consensus 354 l~a~GiaNi~~slfg~~p~~~s~srs~~~~~~G~~t~la~i~~a~i~ll~~l~l~~ll~~iP~~vLa~ili~~~~~li~~ 433 (648)
+.+++++.++|+++|+.|++ ++-+|+.....|+||.++.++.++++++. +|++|+...+|..+.++.+++++..|.
T Consensus 288 l~~D~v~t~~ga~~GtS~~t-~yIESaaGva~GgrTGltavv~g~lFl~~-lf~~Pl~~~vP~~AtapaLi~vG~lM~-- 363 (436)
T COG2252 288 LLADSVATVVGALFGTSTVT-AYIESAAGVAAGGRTGLTAVVTGLLFLLS-LFFSPLAALVPGYATAPALIIVGALML-- 363 (436)
T ss_pred HHHhHHHHHHHHhcCCcchh-hhhhcccccccccccccHHHHHHHHHHHH-HHHHHHHHhCcHhhhhHHHHHHHHHHH--
Confidence 99999999999999999988 59999999999999999999999999999 699999999999999999999999888
Q ss_pred HHHHHHhccCccchhHHhhhhhhhhhccchhhHHHHHHHHHHHHHHH
Q 006373 434 EAVIHLWKLDKFDFIVCMSAYVGVVFGSVEIGLVIAVTISLLRVLLS 480 (648)
Q Consensus 434 ~~~~~l~~~~~~d~~i~~~t~~~~~~~~~~~Gl~~Gv~~sl~~~~~~ 480 (648)
..+.+.++.|+...+.+|+..++..+.+.+.-|+.++++.+..-
T Consensus 364 ---~~v~~id~~d~~ea~PaF~tiv~mplTySIa~Gia~Gfi~y~i~ 407 (436)
T COG2252 364 ---SSVKQIDWSDFTEAVPAFLTIVMMPLTYSIADGIAFGFISYVIL 407 (436)
T ss_pred ---hhhccCCchhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 67788999999999999999999999998888888888876543
No 13
>PF13792 Sulfate_tra_GLY: Sulfate transporter N-terminal domain with GLY motif
Probab=99.91 E-value=9.3e-25 Score=179.32 Aligned_cols=83 Identities=53% Similarity=1.038 Sum_probs=80.2
Q ss_pred ccccccCCCCCh-hhhhhhhhhHHHHHHhhhhhHHHHHHHhCCCcchhhHhhhhhhhhhhhccCCCccccchhhHHHHHH
Q 006373 58 VPILEWAPRYTF-EFFKSDLLAGITIASLAVPQGISYANLANLPPILGLYSSFVPPLVYAMMGSSKDLAVGTVAVGSLLI 136 (648)
Q Consensus 58 ~p~~~wl~~y~~-~~l~~Di~aGltv~~~~iPq~~aya~laglpp~~gl~~~~~~~li~~~~Gss~~~~~Gp~a~~s~~~ 136 (648)
||+++|+++|++ +++++|++||+|++++++||+||||.+||+||++|||++++++++|++||+||++++||++.+++++
T Consensus 1 ~P~l~wl~~y~~k~~~~~D~~aGltva~~~iPq~~a~A~lAg~pp~~GLy~a~~~~liyalfG~s~~~~~Gp~a~~s~l~ 80 (84)
T PF13792_consen 1 FPILQWLPRYSWKSNLRGDLLAGLTVALVAIPQGMAYALLAGVPPIYGLYAAIIPPLIYALFGSSRHMIVGPTAAMSLLI 80 (84)
T ss_pred CCchhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeeHHHHHHHHHHhhccCCCccccChHHHHHHHH
Confidence 699999999997 7899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhh
Q 006373 137 SSML 140 (648)
Q Consensus 137 ~~~~ 140 (648)
++++
T Consensus 81 ~~~v 84 (84)
T PF13792_consen 81 ASVV 84 (84)
T ss_pred HHhC
Confidence 8753
No 14
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=99.90 E-value=4.8e-22 Score=214.28 Aligned_cols=334 Identities=17% Similarity=0.113 Sum_probs=207.6
Q ss_pred HHHhhhhhHHHHHHHhCCC------cchhhHhhhhhhhhhhh-ccCCCccccchhhHHHHHHHHhhhcccCCCCChhHHH
Q 006373 82 IASLAVPQGISYANLANLP------PILGLYSSFVPPLVYAM-MGSSKDLAVGTVAVGSLLISSMLGKEVNPNENPKLYV 154 (648)
Q Consensus 82 v~~~~iPq~~aya~laglp------p~~gl~~~~~~~li~~~-~Gss~~~~~Gp~a~~s~~~~~~~~~~~~~~~~~~~~~ 154 (648)
..++.+|..++.+. |++ ....+..+.++++++++ +|...++..||....-. ....+.... .+....+
T Consensus 16 ~~~iv~P~il~~~~--g~~~~~~~li~at~l~sgi~Tllq~~~~g~~lpl~~G~s~~~~~-~~~~~~g~~---~~~~~~~ 89 (389)
T PF00860_consen 16 YIIIVVPLILAAAF--GLDADTAALISATFLVSGIATLLQGLPAGHRLPLVPGPSFAFIF-AFMIVIGMA---ESGGYGL 89 (389)
T ss_dssp HHHHHHHHTTTS-------------HHHHHHHHHHHHHHHHHHTTT-----EEE-GGGHH-HHHGGG--------HHHHH
T ss_pred HHHHHhHHHHhhcc--cccchhhHHHHHHHHHHHHHHHHHHhcCCCceecccccchhhhh-hhhcccccc---cchhhch
Confidence 45667777777662 321 13567888899999999 99999999998554322 122221110 1223447
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh-hhHHhhchHhHHHHHHhhhHHHHHHhhhhhhhCcccccCCCchHHHHHHHHhcCCCC
Q 006373 155 QLALTATFFAGVFQASLGFLRL-GFVVDFLSHATIVGFMGGAATVVCLQQLKGILGLVRFTHATDLQSVMRSVFSQTSQW 233 (648)
Q Consensus 155 ~~~~~~~~l~Gi~~~llg~~~l-g~l~~~lp~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 233 (648)
+.+.++.+++|+++++++++++ +++.+++|+.|.++++.++|+.+....++.+.|.......... .
T Consensus 90 ~~~~g~~~i~gi~~~~l~~~g~~~~l~~~~pp~v~g~v~~~IGl~L~~~~~~~~~~~~~~~~~~~~-------------~ 156 (389)
T PF00860_consen 90 QAALGAVLISGILFILLGLTGLRKRLRRLFPPVVKGAVVLLIGLSLAPIGLKNAGGIWGNPDGLLV-------------G 156 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-SH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS---BTT-B---------------
T ss_pred hhhhhHHHHHHHHHHHHHHhchHHHHHHHhChhheEeeEeeehhhhhhhHhhcccccccccccccc-------------c
Confidence 8889999999999999999998 5899999999999999999999999999998887532110001 2
Q ss_pred chhhhHHHHHHHHHHHHHhhhhcccccchhhccchhHHHHHHHHHHHHhccccCCCeEEeecCCC-CCCCC---CCCcCC
Q 006373 234 RWESGVLGCCFLLFLLLTRYFSKKKATFFWINAMAPLTSVILGSVLVYFTDAERHGVQVIGQLKK-GLNPP---SLSELD 309 (648)
Q Consensus 234 ~~~~~~i~~~~l~~l~~~~~~~~~~~~~~~~p~~~~Li~vvi~t~i~~~~~~~~~~~~~~g~ip~-g~p~p---~~p~~~ 309 (648)
++....++..++++.+....+.+++.+.. +.++++++++++++.++..+..-. +.+-|. ++|.| ..|.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----ailigi~~g~i~~~~~g~~~~~~~-~~~~~~~~~p~~~~~g~p~-- 228 (389)
T PF00860_consen 157 DGKNLGLAVLTLLFILLLSLFLKGFLRKG-----AILIGIIAGWIVAAILGVVDFSPS-VSSAPWFSLPSPFPFGWPS-- 228 (389)
T ss_dssp -HHHHHHHHHHHHHHHHHHHSSSTTTTTH-----HHHHHHHHHHHHHHHHHHTTSSH--HHHS-SS--------------
T ss_pred cccccccccccchhhhhhhhhhhhhcccc-----cchhhhhhhhhhhhcccccccCcc-ccccccccccccccccccc--
Confidence 34445566666666665555545444433 789999999999999873221110 222111 12211 1222
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc----ccCcccCCchHHHHHhhhhhhhhhcCCcccccccchhhHhhhc
Q 006373 310 FGSPYLMTAVKTGVIIGVIALAEGIAVGRSFAM----FKNYHIDGNKEMVAFGMMNIAGSCTSCYLTAGPFSRSAVNFNA 385 (648)
Q Consensus 310 ~~~~~~~~~~~~~~~~aiv~~~~~~~~~~~~~~----~~~~~~~~n~el~a~GiaNi~~slfg~~p~~~s~srs~~~~~~ 385 (648)
|+...+...+ ..+++.+.|+++...+.++ +.+++.+.+|.+.++|++|+++|+||+.|.+.+..+.+....+
T Consensus 229 f~~~~i~~~~----~~~lv~~~es~G~~~a~~~~~~~~~~~~~~~~r~l~~dg~~~~l~gl~G~~~~t~~~en~g~i~~t 304 (389)
T PF00860_consen 229 FDPGAILTFL----IFALVAMFESIGTIVAVARIAGKDDPRPPRIRRGLLADGLGTILAGLFGTSPTTTYSENAGGIAAT 304 (389)
T ss_dssp --HHHHHHHT----HHHHHHHHHHHHHHHHHHHHHTS-TCCCCCHHHHHHHHHHHHHHHHHHT---EEE-HHHHHHHHHH
T ss_pred ccHHHHHHHH----HHHHHHhhhhhhhHHHHHHHhCCCCccchhhcccceeeeeeeeechhhcCCCCccccccchhhhhh
Confidence 3334444444 4445555555554444433 3333667899999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHH--hhhhhhhchhHHHHHHHHHHHhhccCHHHHHHHhccCccch
Q 006373 386 GCKTAVSNIVMATAVMITLLF--LTPLFHYTPLVVLSSIIIAAMLGLIDYEAVIHLWKLDKFDF 447 (648)
Q Consensus 386 G~~t~la~i~~a~i~ll~~l~--l~~ll~~iP~~vLa~ili~~~~~li~~~~~~~l~~~~~~d~ 447 (648)
|.+||.+++.++++++++.++ +++++..||.+|++|..++ .++++-..+++.+...+..|.
T Consensus 305 ~v~Sr~~~~~a~~~~i~~~~~p~~~~l~~~IP~~v~gg~~lv-~~g~i~~~gi~~i~~~~~~~~ 367 (389)
T PF00860_consen 305 GVASRRVGLTAGVILILFGLSPKFAPLFASIPSPVIGGPLLV-LFGMIMMSGIRNIDWVDLDSA 367 (389)
T ss_dssp TB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHH-HHHHHHHHHHHHHHHTTS-SH
T ss_pred ccccceeeeHHHHHHHHHhhHHHHHHHHHHHHHHHhccchHH-HHHHHHHHHhHhheecccCcc
Confidence 999999999999999988876 8999999999999888776 455555677777766555533
No 15
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=99.73 E-value=4e-18 Score=152.21 Aligned_cols=117 Identities=38% Similarity=0.626 Sum_probs=102.8
Q ss_pred CCCcccCCcEEEEEecCceEEechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHHHHHHHHHHHH
Q 006373 504 YPVAKSVPGVLILHIDAPIYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEIKKVVDR 583 (648)
Q Consensus 504 ~~~~~~~~~v~ivrl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~ 583 (648)
|++.+..+++.+++++|+|+|+|+++|++++.+.+.+.+++.+ ...+.+.+|+||+++++||++|+++|.++.+++++
T Consensus 1 y~~~~~~~~v~ii~~~g~l~f~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~vIlD~s~v~~iDssgi~~L~~~~~~~~~ 78 (117)
T PF01740_consen 1 YIEIETHDGVLIIRLDGPLFFANAEEFRDRIRKLIDEDPERIK--KRQTIKNVILDMSGVSFIDSSGIQALVDIIKELRR 78 (117)
T ss_dssp SCEEEEETTEEEEEEESEESHHHHHHHHHHHHHHHCCSSS--H--TSSSSSEEEEEETTESEESHHHHHHHHHHHHHHHH
T ss_pred CCeeEEECCEEEEEEeeEEEHHHHHHHHHHHHHhhhccccccc--ccccceEEEEEEEeCCcCCHHHHHHHHHHHHHHHH
Confidence 4555677899999999999999999999999987654311000 12347999999999999999999999999999999
Q ss_pred cCCEEEEEcCCHHHHHHHHhCCCccccCCcceecCHHHH
Q 006373 584 RGLKLLLANPRSEVIKKLNNSKFIENIGQEWIYLTVAEA 622 (648)
Q Consensus 584 ~gi~l~l~~~~~~v~~~l~~~g~~~~~~~~~if~s~~~A 622 (648)
+|++++++++++++++.|+++|+.+.++++++|+|++||
T Consensus 79 ~g~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~~s~~~A 117 (117)
T PF01740_consen 79 RGVQLVLVGLNPDVRRILERSGLIDFIPEDQIFPSVDDA 117 (117)
T ss_dssp TTCEEEEESHHHHHHHHHHHTTGHHHSCGGEEESSHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHcCCChhcCCCCccCCHHHC
Confidence 999999999999999999999999999999999999998
No 16
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=99.66 E-value=3.7e-16 Score=136.90 Aligned_cols=102 Identities=23% Similarity=0.322 Sum_probs=93.8
Q ss_pred cCCcEEEEEecCceEEechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEE
Q 006373 509 SVPGVLILHIDAPIYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKL 588 (648)
Q Consensus 509 ~~~~v~ivrl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l 588 (648)
+.+++.+++++|+|+|+|+++|++++.+.+++. +.+.+++||+++++||+||+.+|.++.++++++|+++
T Consensus 5 ~~~~~~vi~l~G~L~f~~~~~~~~~l~~~~~~~----------~~~~vilDls~v~~iDssgi~~L~~~~~~~~~~g~~l 74 (106)
T TIGR02886 5 VKGDVLIVRLSGELDHHTAERVRRKIDDAIERR----------PIKHLILNLKNVTFMDSSGLGVILGRYKKIKNEGGEV 74 (106)
T ss_pred EECCEEEEEEecccchhhHHHHHHHHHHHHHhC----------CCCEEEEECCCCcEecchHHHHHHHHHHHHHHcCCEE
Confidence 356899999999999999999999998876432 4789999999999999999999999999999999999
Q ss_pred EEEcCCHHHHHHHHhCCCccccCCcceecCHHHHH
Q 006373 589 LLANPRSEVIKKLNNSKFIENIGQEWIYLTVAEAV 623 (648)
Q Consensus 589 ~l~~~~~~v~~~l~~~g~~~~~~~~~if~s~~~Av 623 (648)
+++++++++++.|+++|+.+.+ ++|++.++|+
T Consensus 75 ~l~~~~~~v~~~l~~~gl~~~~---~i~~~~~~a~ 106 (106)
T TIGR02886 75 IVCNVSPAVKRLFELSGLFKII---RIYESEEEAL 106 (106)
T ss_pred EEEeCCHHHHHHHHHhCCceEE---EEcCChHHhC
Confidence 9999999999999999999888 6999999874
No 17
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=99.65 E-value=1e-13 Score=145.99 Aligned_cols=341 Identities=15% Similarity=0.160 Sum_probs=202.0
Q ss_pred hhhhhHHHHHHhhh----hhHHHHHHHhCCCcch---hhH----hhhhhhhhhhhccCCCccccchhhHHHHHHHHhhhc
Q 006373 74 SDLLAGITIASLAV----PQGISYANLANLPPIL---GLY----SSFVPPLVYAMMGSSKDLAVGTVAVGSLLISSMLGK 142 (648)
Q Consensus 74 ~Di~aGltv~~~~i----Pq~~aya~laglpp~~---gl~----~~~~~~li~~~~Gss~~~~~Gp~a~~s~~~~~~~~~ 142 (648)
.-+.||+...++.. ..-+.-+.-.|+++.. .+. ++-+.+++..+. .+.|++.+++..-+.++.....+
T Consensus 22 s~~~aG~va~lvg~~~~~~iv~~a~~~~g~s~aq~~swl~a~~~~~Gl~ti~lS~~-~r~Pi~~awStPGaAll~~~~~~ 100 (395)
T TIGR00843 22 PTLIAGFLAVLIGYAGPAAIFFQAAIKAGASTAMIIGWITAIGIAAAVSGIFLSIR-FKTPVLTAWSAPGAALLVTGFPG 100 (395)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCeeeecCchHHHHHHHhcCC
Confidence 34567777766422 1112223345777752 222 222334444443 37889999865444444433333
Q ss_pred ccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHhhchHhHHHHHHhhhHHHHHHhhhhhhhCcccccCCCchHH
Q 006373 143 EVNPNENPKLYVQLALTATFFAGVFQASLGFLR-LGFVVDFLSHATIVGFMGGAATVVCLQQLKGILGLVRFTHATDLQS 221 (648)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~l~Gi~~~llg~~~-lg~l~~~lp~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~~~~~~~~ 221 (648)
.. +..+.++-+++|++.+++|+.+ ++|+++++|+++..|.++|+.+.....-++.+..
T Consensus 101 ~~---------~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amLAGIlL~f~l~~~~a~~~------------ 159 (395)
T TIGR00843 101 IS---------LNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAMLAGILFQFGLGAFAALDG------------ 159 (395)
T ss_pred CC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 32 5667888899999999999999 5999999999999999999988775433322110
Q ss_pred HHHHHHhcCCCCchhhhHHHHHHHHHHHHHhhhhcccccchhhccchhHHHHHHHHHHHHhccccCCCeEEeecCCCCCC
Q 006373 222 VMRSVFSQTSQWRWESGVLGCCFLLFLLLTRYFSKKKATFFWINAMAPLTSVILGSVLVYFTDAERHGVQVIGQLKKGLN 301 (648)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~~~~~~~~~p~~~~Li~vvi~t~i~~~~~~~~~~~~~~g~ip~g~p 301 (648)
...++...++..++.+++ .|+ ++.++++++|+++++..+..+. +.+...++
T Consensus 160 ---------------~pll~~~mll~~l~~~r~---~Pr------~avl~aLlvG~iva~~~G~~~~-----~~~~~~l~ 210 (395)
T TIGR00843 160 ---------------LFLICFSMLLCWLASKAF---APR------YAMIAALICGIAFSFALGDMNP-----TDLDFKIA 210 (395)
T ss_pred ---------------hHHHHHHHHHHHHHHHHh---cch------HHHHHHHHHHHHHHHHhcCCCc-----cccccccc
Confidence 012233333333333322 132 2789999999999998864221 11111233
Q ss_pred CCC--CCcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcccCCchHHHHHhhhhhhhhhcCCcc------cc
Q 006373 302 PPS--LSELDFGSPYLMTAVKTGVIIGVIALAEGIAVGRSFAMFKNYHIDGNKEMVAFGMMNIAGSCTSCYL------TA 373 (648)
Q Consensus 302 ~p~--~p~~~~~~~~~~~~~~~~~~~aiv~~~~~~~~~~~~~~~~~~~~~~n~el~a~GiaNi~~slfg~~p------~~ 373 (648)
.|. .|++++. ..+..++...++.+.....-+-...+..||+.+.++-+.+.|++|++++.||+++ .+
T Consensus 211 ~p~~~~P~fs~~-----a~~~l~lPl~~vtm~~qnlpgiavl~aaGy~~p~~~~~~~tGl~sll~ApfGg~~~nlaaita 285 (395)
T TIGR00843 211 LPQFIAPDFSFA-----HSLNLALPLFLVSLAGQFAPGIAALKAAGYNAPAKPIIAAAGLAALFAAFAGGISIGIAAITA 285 (395)
T ss_pred cceeeCCCCCHH-----HHHHHHHHHHHHHHHhcCchHHHHHHHcCCCCCchHHHHHHHHHHHHHhccCCchhhhhHHhH
Confidence 333 5554432 2333334444444433322222333457888889999999999999999999999 22
Q ss_pred cccchhhHhhhcCCCchhHHHHHHHHHHHHHHH---hhhhhhhchhHHHHHHHHHHHhhccCHHHHHHHhccCccchh--
Q 006373 374 GPFSRSAVNFNAGCKTAVSNIVMATAVMITLLF---LTPLFHYTPLVVLSSIIIAAMLGLIDYEAVIHLWKLDKFDFI-- 448 (648)
Q Consensus 374 ~s~srs~~~~~~G~~t~la~i~~a~i~ll~~l~---l~~ll~~iP~~vLa~ili~~~~~li~~~~~~~l~~~~~~d~~-- 448 (648)
+-+....... -++|.-.+++..|++.+++.+| +..++..+|.+..+++-=.+.++-+. ..+..-.+ +..++-
T Consensus 286 Aic~G~~ah~-d~~rR~~a~i~~Gv~yll~glfag~i~~l~~~~P~~li~~laGlAll~~~~-~~l~~a~~-~~~~r~~a 362 (395)
T TIGR00843 286 AICMGKDAHE-DKDKRWIAAAAAGIFYLLAGLFAGAITALFAALPKELIAALAGLALLGAIA-GNIKIALH-EDQERDAA 362 (395)
T ss_pred HHhcCccccc-CcCccchHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-HHHHHHhc-CcchhHHH
Confidence 2222223333 3788889999999999999988 66789999999887755444444442 22333332 222333
Q ss_pred --HHhhhhhhhhhccc---hhhHHHHHHHH
Q 006373 449 --VCMSAYVGVVFGSV---EIGLVIAVTIS 473 (648)
Q Consensus 449 --i~~~t~~~~~~~~~---~~Gl~~Gv~~s 473 (648)
.+++|....-++|+ .+|+++|+...
T Consensus 363 ~~tflvtaSg~~~~gigaafWgl~~G~~~~ 392 (395)
T TIGR00843 363 LIAFLATASGLHFLGIGSAFWGLCAGGLAY 392 (395)
T ss_pred HHHHHHHHhcCCcccccHHHHHHHHHHHHH
Confidence 33444444444443 46888886543
No 18
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=99.64 E-value=9.8e-16 Score=134.91 Aligned_cols=102 Identities=23% Similarity=0.229 Sum_probs=92.0
Q ss_pred CCcEEEEEecCceEEechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEE
Q 006373 510 VPGVLILHIDAPIYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLL 589 (648)
Q Consensus 510 ~~~v~ivrl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~ 589 (648)
.+++.+++++|+|+|+|+++|++++.+.+.+. +.+.+|+||+++++||+||+++|.++.++++++|++++
T Consensus 8 ~~~~~v~~l~G~L~~~~a~~~~~~l~~~~~~~----------~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l~ 77 (109)
T cd07041 8 WDGVLVLPLIGDLDDERAEQLQERLLEAISRR----------RARGVIIDLTGVPVIDSAVARHLLRLARALRLLGARTI 77 (109)
T ss_pred eCCEEEEeeeeeECHHHHHHHHHHHHHHHHHc----------CCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCeEE
Confidence 45789999999999999999999987655432 46899999999999999999999999999999999999
Q ss_pred EEcCCHHHHHHHHhCCCccccCCcceecCHHHHH
Q 006373 590 LANPRSEVIKKLNNSKFIENIGQEWIYLTVAEAV 623 (648)
Q Consensus 590 l~~~~~~v~~~l~~~g~~~~~~~~~if~s~~~Av 623 (648)
++++++++++.|+++|+.+ +..++|+|++||+
T Consensus 78 l~g~~~~v~~~l~~~gl~~--~~~~~~~t~~~Al 109 (109)
T cd07041 78 LTGIRPEVAQTLVELGIDL--SGIRTAATLQQAL 109 (109)
T ss_pred EEeCCHHHHHHHHHhCCCh--hhceeeccHHHhC
Confidence 9999999999999999977 3447999999985
No 19
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=99.57 E-value=9.4e-15 Score=126.48 Aligned_cols=92 Identities=15% Similarity=0.262 Sum_probs=83.9
Q ss_pred cCCcEEEEEecCceEEechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEE
Q 006373 509 SVPGVLILHIDAPIYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKL 588 (648)
Q Consensus 509 ~~~~v~ivrl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l 588 (648)
+.+++.+++++|+++|+|+++|++++.+.+.+ +..+.+|+||+++++||+||+++|.++.++++++|+++
T Consensus 5 ~~~~v~ii~~~G~l~f~~~~~~~~~l~~~~~~----------~~~~~vilDls~v~~iDssgl~~L~~l~~~~~~~g~~l 74 (100)
T cd06844 5 KVDDYWVVRLEGELDHHSVEQFKEELLHNITN----------VAGKTIVIDISALEFMDSSGTGVLLERSRLAEAVGGQF 74 (100)
T ss_pred EECCEEEEEEEEEecHhhHHHHHHHHHHHHHh----------CCCCEEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCEE
Confidence 45689999999999999999999998765532 24789999999999999999999999999999999999
Q ss_pred EEEcCCHHHHHHHHhCCCcccc
Q 006373 589 LLANPRSEVIKKLNNSKFIENI 610 (648)
Q Consensus 589 ~l~~~~~~v~~~l~~~g~~~~~ 610 (648)
.++++++++++.|+++|+.+.+
T Consensus 75 ~l~~~~~~v~~~l~~~gl~~~~ 96 (100)
T cd06844 75 VLTGISPAVRITLTESGLDKGX 96 (100)
T ss_pred EEECCCHHHHHHHHHhCchhhh
Confidence 9999999999999999997754
No 20
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=99.56 E-value=2.3e-12 Score=147.36 Aligned_cols=348 Identities=15% Similarity=0.099 Sum_probs=232.3
Q ss_pred hhHHHHHHhhhhhHHHHHHHhC------CCcchhhHhhhhhhhhhhhccCCCccccchhhHHHHHHHHhhhcccCCCCCh
Q 006373 77 LAGITIASLAVPQGISYANLAN------LPPILGLYSSFVPPLVYAMMGSSKDLAVGTVAVGSLLISSMLGKEVNPNENP 150 (648)
Q Consensus 77 ~aGltv~~~~iPq~~aya~lag------lpp~~gl~~~~~~~li~~~~Gss~~~~~Gp~a~~s~~~~~~~~~~~~~~~~~ 150 (648)
-|-+-..+..+.-+++|+.+.+ +...--|.++.+++++|++||+.|-.++|+++.+.++...+..--. ...
T Consensus 373 aa~ifiyFA~L~PaIaFG~ll~~~T~g~~gv~E~Llstai~Giifslf~GQPL~IlG~TGPilvF~~~ly~~c~---~~~ 449 (900)
T TIGR00834 373 AAVIFIYFAALSPAITFGGLLGEKTRNMMGVSELLISTAVQGVLFALLAAQPLLVVGFSGPLLVFEEAFFSFCE---SNG 449 (900)
T ss_pred HHHHHHHHHHhhHHhhHHHHHHHhhCCcchHHHHHHHHHHHHHHHhhhcCCceEEecCcccHHHHHHHHHHHHh---hcC
Confidence 3344445556677788876532 4444569999999999999999999999988777665444332111 112
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhchHhHHHHHHhhhHHHHHHhhhhhhhCcccccCC-CchH--H------
Q 006373 151 KLYVQLALTATFFAGVFQASLGFLRLGFVVDFLSHATIVGFMGGAATVVCLQQLKGILGLVRFTHA-TDLQ--S------ 221 (648)
Q Consensus 151 ~~~~~~~~~~~~l~Gi~~~llg~~~lg~l~~~lp~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~~~-~~~~--~------ 221 (648)
.+|......+.+.++++.++++.+...++++|+.+..-..|-.-|+++.+...++.+...-..... .++. .
T Consensus 450 ~~yl~~~~WigiW~~~~~~lla~~~~s~lvryiTRFTeEiFa~lIs~IFI~eai~~L~~~f~~~~~~~~~~~~~~~~~~~ 529 (900)
T TIGR00834 450 LEYLVGRVWIGLWLVLLVLLLVATEGSFLVRYISRFTQEIFSFLISLIFIYETFSKLIKIFQEHPLQVFYNTLFCVPPKP 529 (900)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccc
Confidence 357888889999999999999999999999999999999999999999999988877653210000 0000 0
Q ss_pred ---HH-----------HHH-----HhcCCCCchhhhHHHHHHHHHHHHHhhhhcc--ccc--chhhccchhHHHHHHHHH
Q 006373 222 ---VM-----------RSV-----FSQTSQWRWESGVLGCCFLLFLLLTRYFSKK--KAT--FFWINAMAPLTSVILGSV 278 (648)
Q Consensus 222 ---~~-----------~~~-----~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~~--~~~--~~~~p~~~~Li~vvi~t~ 278 (648)
.. ... +...++.-..++++.+.++.+.+..+.+++. +++ +..+...+..++|++.+.
T Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~llsliL~lgTf~~a~~L~~fk~s~yf~~~vR~~isDfgv~iaI~~~t~ 609 (900)
T TIGR00834 530 QGPSVSALLEKDCSKLGGTLGGNNCRFQPNTALLSLVLMLGTFFLAMFLRKFKNSRYFPGKARRLIGDFGVPISILIMVL 609 (900)
T ss_pred ccccccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhCCCCcCCchhhhhhhhhhHHHHHHHHHH
Confidence 00 000 0000112233455555555555555544321 111 112455678889999999
Q ss_pred HHHhccccCCCeEEeecCCCCCCCCCCCc--------CC----CChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC-
Q 006373 279 LVYFTDAERHGVQVIGQLKKGLNPPSLSE--------LD----FGSPYLMTAVKTGVIIGVIALAEGIAVGRSFAMFKN- 345 (648)
Q Consensus 279 i~~~~~~~~~~~~~~g~ip~g~p~p~~p~--------~~----~~~~~~~~~~~~~~~~aiv~~~~~~~~~~~~~~~~~- 345 (648)
+.|.++.- ... .-.+|.+++ |..|. +. +.+..+..++..++.++++-|+|+--++....++++
T Consensus 610 v~~~~~~v--~~~-kl~Vp~~f~-pt~p~~R~W~i~p~~~~~~~p~w~~~~A~iPAlll~ILiFmD~nIts~iv~~~e~k 685 (900)
T TIGR00834 610 VDIFIGDT--YTQ-KLSVPSGLK-VTNPSARGWFIPPLGENRPFPWWMMFAAALPALLVFILIFMEQQITTLIVSKKERK 685 (900)
T ss_pred HHHHhccC--ccc-ccCCCCCcC-CCCCCCCCeEEccccccccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcCcccc
Confidence 99876510 110 113566655 33331 11 122334667778889999999998766666554332
Q ss_pred --cccCCchHHHHHhhhhhhhhhcCCcccccccchhhHhhhc----------C-------C-CchhHHHHHHHHHHHHHH
Q 006373 346 --YHIDGNKEMVAFGMMNIAGSCTSCYLTAGPFSRSAVNFNA----------G-------C-KTAVSNIVMATAVMITLL 405 (648)
Q Consensus 346 --~~~~~n~el~a~GiaNi~~slfg~~p~~~s~srs~~~~~~----------G-------~-~t~la~i~~a~i~ll~~l 405 (648)
+..-.+-+++.+|+.|.++|+||-.+.+++..+|....++ | + .+|+++++.++++.+.+
T Consensus 686 LkKgsgyH~Dllllg~~~~v~sllGLPw~~aatv~S~~Hv~sL~v~~~~~~~Ge~~~i~~V~EQRvT~ll~~lLiglsv- 764 (900)
T TIGR00834 686 LKKGSGFHLDLLLVVGMGGVAALFGLPWLSAATVRSVTHANALTVMSKASAPGEKAQIQEVREQRVTGLLVAVLVGLSI- 764 (900)
T ss_pred CCCCcccchHHHHHHHHHHHHHhcCCCcccccCCcChhhHhHHeeeeeccCCCCCCccceeEeeehHHHHHHHHHHHHH-
Confidence 2234578999999999999999999999998887765442 1 2 36899999998665554
Q ss_pred HhhhhhhhchhHHHHHHHHHHHhhccC
Q 006373 406 FLTPLFHYTPLVVLSSIIIAAMLGLID 432 (648)
Q Consensus 406 ~l~~ll~~iP~~vLa~ili~~~~~li~ 432 (648)
+++|++..||++||.|+.++.|+.-+.
T Consensus 765 ~~~PvL~~IP~aVL~GvFlYMGv~SL~ 791 (900)
T TIGR00834 765 LMEPILKRIPLAVLFGIFLYMGVTSLS 791 (900)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 689999999999999999999987663
No 21
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=99.53 E-value=9.8e-13 Score=137.77 Aligned_cols=349 Identities=13% Similarity=0.118 Sum_probs=225.9
Q ss_pred chhHHHHHHHhhhccccccCCCCChhhhhhhhhhHHHHHHhhhhhHHHHHHHhCCCcc------hhhHhhhhhhhhhhhc
Q 006373 45 SASRKLLLGLQYFVPILEWAPRYTFEFFKSDLLAGITIASLAVPQGISYANLANLPPI------LGLYSSFVPPLVYAMM 118 (648)
Q Consensus 45 ~~~~~~~~~~~~~~p~~~wl~~y~~~~l~~Di~aGltv~~~~iPq~~aya~laglpp~------~gl~~~~~~~li~~~~ 118 (648)
|........+|||+.++ -+.+.+|..++=++=+|-... .-++++-+..++...|
T Consensus 10 ~w~~~i~lgfQhyl~~l--------------------g~~v~iP~~lv~~m~~g~~~~~~~lIsT~~f~sGI~TllQt~f 69 (510)
T KOG1292|consen 10 PWPEIILLGFQHYLVCL--------------------GTTVLIPFLLVPLMCGGDEEKAVQLISTIFFVSGITTLLQTTF 69 (510)
T ss_pred CchHHHHhccchHHHHh--------------------hhhhhhhhhhcccccCChHHHHHHHHHHHhhhccHHHHHHHHh
Confidence 34455677899999998 678889988876653332221 3567777889999999
Q ss_pred cCCCccccchhhHHHHHHHHhhh--cccCCC----CChhH---HHHHHHHHHHHHHHHHHHHHhhhh-hhHHhhchHhHH
Q 006373 119 GSSKDLAVGTVAVGSLLISSMLG--KEVNPN----ENPKL---YVQLALTATFFAGVFQASLGFLRL-GFVVDFLSHATI 188 (648)
Q Consensus 119 Gss~~~~~Gp~a~~s~~~~~~~~--~~~~~~----~~~~~---~~~~~~~~~~l~Gi~~~llg~~~l-g~l~~~lp~~Vi 188 (648)
|++.++..||+.+.-.-+-+++. +...+. .+.+. .++..-++.++++++|.++|+.++ |++.||+.+-.+
T Consensus 70 G~RLp~v~G~Sfafl~p~~~i~~~~~~~~~~~~~~~~~~~~~~~mr~iqGAlivas~vqiilG~sGl~g~l~rfi~Plti 149 (510)
T KOG1292|consen 70 GTRLPLVQGPSFAFLPPALAIISLPRFTCITTPHETDTERFQHRMREIQGALIVASLVQIILGFSGLWGNLLRFIGPLTI 149 (510)
T ss_pred hcccccccccceehhhHHHHHHhccccCCCCCcccchhHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHhhcCChhh
Confidence 99999999997766555555554 222111 11112 245667888999999999999996 999999999999
Q ss_pred HHHHhhhHHHHHHhhhhhhhCcccccCCCchHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHh-h--hhcc-c--ccch
Q 006373 189 VGFMGGAATVVCLQQLKGILGLVRFTHATDLQSVMRSVFSQTSQWRWESGVLGCCFLLFLLLTR-Y--FSKK-K--ATFF 262 (648)
Q Consensus 189 ~Gf~~gigl~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~l~~~~-~--~~~~-~--~~~~ 262 (648)
.=.++.+|+.+.....+.+ | -+| -+|+..+.+++++. + +.++ + ++..
T Consensus 150 ~P~v~lvgl~l~~~~~~~~-~-----------------------~~w---eI~l~~~llli~fsqy~~~~~~~~~~~~~~ 202 (510)
T KOG1292|consen 150 VPLVALVGLGLFQDGFPKL-G-----------------------KHW---EISLPEILLLILFSQYASLPKKGFGSRRIQ 202 (510)
T ss_pred hhHHHHHhhhhHHhhhhhh-h-----------------------hhe---eecHHHHHHHHHHHHhhhcccccccccccc
Confidence 8888888887663322211 0 111 12333333333222 2 2111 1 1111
Q ss_pred hhccchhHHHHHHHHHHHHhcc---ccCCC---------eEE---eecCCC-CCCCCC-CCcCCCChhhHHHHHHHHHHH
Q 006373 263 WINAMAPLTSVILGSVLVYFTD---AERHG---------VQV---IGQLKK-GLNPPS-LSELDFGSPYLMTAVKTGVII 325 (648)
Q Consensus 263 ~~p~~~~Li~vvi~t~i~~~~~---~~~~~---------~~~---~g~ip~-g~p~p~-~p~~~~~~~~~~~~~~~~~~~ 325 (648)
.+.-.+.++++.+.+++++.+- ...+. .+- ...-|- ..|.|. +-...|+......++..+++.
T Consensus 203 if~~f~vll~i~ivW~~~~iLT~tgay~~~~~~t~~~~RTD~~~vi~~apWi~vPyP~QwG~P~f~~~~~f~m~aa~~va 282 (510)
T KOG1292|consen 203 IFSRFPVLLAIAIVWLYCFILTITGAYPYKPTTTQSSCRTDRNGVISSAPWIRVPYPFQWGPPTFSAGLVFAMMAASLVA 282 (510)
T ss_pred hHhhccHHHHHHHHHHHHHHHHhccccCCCccccCCcccccHhhhhccCCceeecCCCccCCCcccHHHHHHHHHHHHHH
Confidence 1222356778888888877762 21110 000 111110 122222 111234445555566555555
Q ss_pred HHHHHHHHHHHHhhhhcccCcccCCchHHHHHhhhhhhhhhcCCc-ccccccchhhHhhhcCCCchhHHHHHHHHHHHHH
Q 006373 326 GVIALAEGIAVGRSFAMFKNYHIDGNKEMVAFGMMNIAGSCTSCY-LTAGPFSRSAVNFNAGCKTAVSNIVMATAVMITL 404 (648)
Q Consensus 326 aiv~~~~~~~~~~~~~~~~~~~~~~n~el~a~GiaNi~~slfg~~-p~~~s~srs~~~~~~G~~t~la~i~~a~i~ll~~ 404 (648)
.+++..+-.+.++....+.......||....+|++.+++|+||.- ..+.+.-|.++..-+..-||..--++|.++++..
T Consensus 283 ~iES~G~y~a~ar~~~a~ppP~~~inRgi~~eGig~lL~gl~G~gtG~Tt~~ENigll~vTKVgSRrvvQ~aa~fmI~~~ 362 (510)
T KOG1292|consen 283 MIESTGDYIACARLSSATPPPPSVLNRGIGWEGIGSLLAGLFGTGTGSTTSVENIGLLGVTKVGSRRVVQIAAGFMIFFG 362 (510)
T ss_pred HHHhcchHHHHHHHhcCCCCChhhhhhhhhhhhHHHHHHHhhCCCccceeeccceeeEeeeeeeeeeehhhhHHHHHHHH
Confidence 566666666667766666666778899999999999999999955 4444556677777889999999999999999998
Q ss_pred HH--hhhhhhhchhHHHHHHHHHHHhhccCHHHHHHHhc
Q 006373 405 LF--LTPLFHYTPLVVLSSIIIAAMLGLIDYEAVIHLWK 441 (648)
Q Consensus 405 l~--l~~ll~~iP~~vLa~ili~~~~~li~~~~~~~l~~ 441 (648)
.+ ++.+++.||.++.||+.-+ ++.|+.--++..+.-
T Consensus 363 i~gKFgA~fAsIP~piv~~l~c~-~~~mv~avgLSnLQf 400 (510)
T KOG1292|consen 363 IFGKFGAFFASIPDPIVGGLLCI-LFGMVGAVGLSNLQF 400 (510)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHH-HHHHHHHHhhhhhee
Confidence 88 9999999999999998766 777775555544443
No 22
>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]
Probab=99.51 E-value=8.6e-12 Score=139.00 Aligned_cols=323 Identities=13% Similarity=0.125 Sum_probs=218.6
Q ss_pred chhhHhhhhhhhhhhhccCCCccccchhhHHHHHHHHhhhcccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHh
Q 006373 102 ILGLYSSFVPPLVYAMMGSSKDLAVGTVAVGSLLISSMLGKEVNPNENPKLYVQLALTATFFAGVFQASLGFLRLGFVVD 181 (648)
Q Consensus 102 ~~gl~~~~~~~li~~~~Gss~~~~~Gp~a~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Gi~~~llg~~~lg~l~~ 181 (648)
.-.|.+..+++++|++||+.|-.++|+++.+.++-..+.. .. .+++..|.+....+++.+.++.+++..+....+++
T Consensus 395 ~E~L~stal~GiifslfggQPLlIlg~TgP~lVfe~~lf~-f~--~~~~~dyl~~r~wVglW~~~l~illaa~~as~lv~ 471 (876)
T KOG1172|consen 395 VETLLSTALCGIIFSLFGGQPLLILGVTGPLLVFEKALFK-FC--KDNGLDYLAFRAWVGLWTAFLLILLAATNASSLVK 471 (876)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHHH-HH--hhCCCchhhHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 3468899999999999999999999988777665433322 11 12234678888899999999999999999999999
Q ss_pred hchHhHHHHHHhhhHHHHHHhhhhhhhCcccccCCCc---h-HHH--HHHHHhcC------CCCchh----hhHHHHHHH
Q 006373 182 FLSHATIVGFMGGAATVVCLQQLKGILGLVRFTHATD---L-QSV--MRSVFSQT------SQWRWE----SGVLGCCFL 245 (648)
Q Consensus 182 ~lp~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~~~~~---~-~~~--~~~~~~~~------~~~~~~----~~~i~~~~l 245 (648)
|+.+..-..|-.-|+++.+...++.+.++........ . ... ...-..+. ..+... ++++.+.++
T Consensus 472 ~~TRfteEiF~~LIs~iFi~eai~kl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~llslil~~gt~ 551 (876)
T KOG1172|consen 472 YITRFTEEIFGLLISLIFIYEAIKKLIKIFKGLPIEFDSKPNPGADWSGPECESVSGTLLGSSCRPDTALLSLILMFGTL 551 (876)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccCCcccccccccccccCcccCCCcCCcchHHHHHHHHHHHH
Confidence 9999999999999999999999997766532110000 0 000 00000000 001122 333333333
Q ss_pred HHHHHHhhhhc--cccc--chhhccchhHHHHHHHHHHHHhcc-ccCCCeEEeecCCCCCCCCCCC--------cCCCCh
Q 006373 246 LFLLLTRYFSK--KKAT--FFWINAMAPLTSVILGSVLVYFTD-AERHGVQVIGQLKKGLNPPSLS--------ELDFGS 312 (648)
Q Consensus 246 ~~l~~~~~~~~--~~~~--~~~~p~~~~Li~vvi~t~i~~~~~-~~~~~~~~~g~ip~g~p~p~~p--------~~~~~~ 312 (648)
.+-+..|.+++ .+++ +.++...+..++|++-+.+.+..+ ....++ .+|..+|++..+ .-...+
T Consensus 552 ~~a~~lr~fr~s~yf~~~~R~~isDfgvpisIl~~s~i~~~~~~~~~~kl----~vp~~~~~t~~~~rgw~v~~~~~~P~ 627 (876)
T KOG1172|consen 552 FLALTLRKFKSSRYFPRKVRSLISDFGVPLSILVFSLIDYFGGSVETPKL----PVPSVFPPTWPFDRGWFVPPFGKNPW 627 (876)
T ss_pred HHHHHHHHhccCCccchHHHHHHHhhhhHHHHHHHHHHHhhccccCCCcc----ccCcCCCCCCcccCCeeeCCCCCCCH
Confidence 33333333321 1111 123455677788888888888875 222222 234444433221 112334
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCc---ccCCchHHHHHhhhhhhhhhcCCcccccccchhhHhhhc----
Q 006373 313 PYLMTAVKTGVIIGVIALAEGIAVGRSFAMFKNY---HIDGNKEMVAFGMMNIAGSCTSCYLTAGPFSRSAVNFNA---- 385 (648)
Q Consensus 313 ~~~~~~~~~~~~~aiv~~~~~~~~~~~~~~~~~~---~~~~n~el~a~GiaNi~~slfg~~p~~~s~srs~~~~~~---- 385 (648)
..+..++..++.++++-|.|+--++..+.+++.+ .....-+|+-+|+.|.++|+||-.+..+...+|....++
T Consensus 628 ~~~~~A~ipalll~iLiFmDqqIts~iv~rke~kLKKgsgyH~DLlllgil~~icsllGLPw~~~a~p~S~~H~~SL~v~ 707 (876)
T KOG1172|consen 628 WYVFAALIPALLLTILIFMDQQITAVIVNRKENKLKKGSGYHLDLLLLGILTLICSLLGLPWSNAATVQSPMHTKSLAVE 707 (876)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHhhcccccCCCCcchhHHHHHHHHHHHHHHhcCCCccccccccCHHHHHHHHHh
Confidence 5667778889999999999987776666554332 234567999999999999999999999999998876553
Q ss_pred -------------CC-CchhHHHHHHHHHHHHHHHhhhhhhhchhHHHHHHHHHHHhhccC
Q 006373 386 -------------GC-KTAVSNIVMATAVMITLLFLTPLFHYTPLVVLSSIIIAAMLGLID 432 (648)
Q Consensus 386 -------------G~-~t~la~i~~a~i~ll~~l~l~~ll~~iP~~vLa~ili~~~~~li~ 432 (648)
|+ ..|+++++.++++. +..++.|++..||+|||-|+..+.++.-+.
T Consensus 708 ~~~~apge~~~i~~V~EQRvtgll~~llvg-ls~~~~pvL~~IP~~VL~GvFlYMgv~SL~ 767 (876)
T KOG1172|consen 708 SETSAPGEQPQIVGVREQRVTGLLQFLLVG-LSVLLLPVLKLIPMPVLYGVFLYMGVSSLP 767 (876)
T ss_pred hcccCCCCccccccchhhhhHHHHHHHHHH-HHHHHHHHHhhccHHHHHHHHHHHhhccCC
Confidence 23 35789999999888 444799999999999999999999887653
No 23
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=99.51 E-value=2e-11 Score=126.25 Aligned_cols=274 Identities=17% Similarity=0.215 Sum_probs=180.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh-hhhHHhhchHhHHHHHHhhhHHHHHHhhhhhhhCcccccCCCchHHHHHHHHhcCCC
Q 006373 154 VQLALTATFFAGVFQASLGFLR-LGFVVDFLSHATIVGFMGGAATVVCLQQLKGILGLVRFTHATDLQSVMRSVFSQTSQ 232 (648)
Q Consensus 154 ~~~~~~~~~l~Gi~~~llg~~~-lg~l~~~lp~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 232 (648)
+..+.++-+++|++.++.|+++ ++|+++++|.++..++++|+-+.....-++.+-
T Consensus 87 ~~eavGAfl~~~~Li~l~G~tg~~~rl~~~IP~~ia~AMLAGvLl~f~l~~f~a~~------------------------ 142 (378)
T PF03594_consen 87 FAEAVGAFLVAGALILLLGVTGLFGRLMRRIPPPIASAMLAGVLLPFGLAAFTALQ------------------------ 142 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH------------------------
Confidence 5667788889999999999999 599999999999999999998887654433211
Q ss_pred CchhhhHHHHHHHHHHHHHhhhhcccccchhhccchhHHHHHHHHHHHHhccccCCCeEEeecCCCCCCCCC--CCcCCC
Q 006373 233 WRWESGVLGCCFLLFLLLTRYFSKKKATFFWINAMAPLTSVILGSVLVYFTDAERHGVQVIGQLKKGLNPPS--LSELDF 310 (648)
Q Consensus 233 ~~~~~~~i~~~~l~~l~~~~~~~~~~~~~~~~p~~~~Li~vvi~t~i~~~~~~~~~~~~~~g~ip~g~p~p~--~p~~~~ 310 (648)
. .. .+....++..++.|++.+|+ +.+.+++.+..+++..+.-. . ..++..++.|. .|.+++
T Consensus 143 ~--~P-~l~~~ml~~~l~~~r~~pr~---------av~~al~~g~~~a~~~g~~~--~---~~~~~~~~~p~~~~P~Fs~ 205 (378)
T PF03594_consen 143 A--DP-LLVGPMLAVFLLARRFSPRY---------AVLAALVAGVAVAALTGQLH--P---SALQLSLAHPVFTTPEFSW 205 (378)
T ss_pred h--HH-HHHHHHHHHHHHHHHHcchh---------HHHHHHHHHHHHHHhcCCCC--c---cccccccceeEEECCcccH
Confidence 0 11 22233333334455554444 45677778888777765311 1 12222344444 454443
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcccCCchHHHHHhhhhhhhhhcCCcccccccchhhHhhhc--C--
Q 006373 311 GSPYLMTAVKTGVIIGVIALAEGIAVGRSFAMFKNYHIDGNKEMVAFGMMNIAGSCTSCYLTAGPFSRSAVNFNA--G-- 386 (648)
Q Consensus 311 ~~~~~~~~~~~~~~~aiv~~~~~~~~~~~~~~~~~~~~~~n~el~a~GiaNi~~slfg~~p~~~s~srs~~~~~~--G-- 386 (648)
..++.+++.+.++.+.....-+-++-+.+||+.+.|+-+...|++|++.+.|||++.+-+--..++...- +
T Consensus 206 -----~a~v~lalPL~ivtmasQnlpG~aVL~a~GY~~p~~~~~~~tGl~s~l~ApfGg~~~nlAaitaAIc~g~eah~d 280 (378)
T PF03594_consen 206 -----SALVSLALPLFIVTMASQNLPGIAVLRAAGYQPPVNPLITVTGLASLLAAPFGGHAVNLAAITAAICAGPEAHPD 280 (378)
T ss_pred -----HHHHHHHHHHHHHHHHhcchHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHcCCccCCC
Confidence 3455566677777777665555666678999999999999999999999999999988766666665543 3
Q ss_pred -CCchhHHHHHHHHHHHHHHH---hhhhhhhchhHHHHHHHHHHHhhccCHHHHHHHhccCc-cc--hhHHhhhhhhhhh
Q 006373 387 -CKTAVSNIVMATAVMITLLF---LTPLFHYTPLVVLSSIIIAAMLGLIDYEAVIHLWKLDK-FD--FIVCMSAYVGVVF 459 (648)
Q Consensus 387 -~~t~la~i~~a~i~ll~~l~---l~~ll~~iP~~vLa~ili~~~~~li~~~~~~~l~~~~~-~d--~~i~~~t~~~~~~ 459 (648)
.|--.+++.+++..++..+| +..++..+|++.++.+-=.+.++.+ .+.+..-++-++ .| .+.+++|....-+
T Consensus 281 p~rRy~Aav~~Gv~yll~Gl~a~~~v~l~~~lP~~li~~lAGLALlg~l-~~sl~~A~~~~~~r~aAlvtFlvtaSGisl 359 (378)
T PF03594_consen 281 PSRRYIAAVAAGVFYLLFGLFAAALVALFAALPPALIAALAGLALLGTL-GGSLQTAFSDEKYREAALVTFLVTASGISL 359 (378)
T ss_pred cccchHHHHHHhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HHHHHHHhcCcchhHHHHHHHHHHHcCCCc
Confidence 23336899999999999988 6678999999987765444444443 233444444222 12 2233444444444
Q ss_pred cc---chhhHHHHHHHHH
Q 006373 460 GS---VEIGLVIAVTISL 474 (648)
Q Consensus 460 ~~---~~~Gl~~Gv~~sl 474 (648)
+| -.+|+++|++..+
T Consensus 360 ~gIgaafWgLv~G~~~~~ 377 (378)
T PF03594_consen 360 LGIGAAFWGLVAGLLVHL 377 (378)
T ss_pred ccccHHHHHHHHHHHHHh
Confidence 44 3468888877653
No 24
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=99.40 E-value=2.7e-12 Score=112.21 Aligned_cols=100 Identities=37% Similarity=0.671 Sum_probs=88.0
Q ss_pred cCCcEEEEEecCceEEechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEE
Q 006373 509 SVPGVLILHIDAPIYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKL 588 (648)
Q Consensus 509 ~~~~v~ivrl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l 588 (648)
..+++.+++++|+++|.|++.+++++.+..+.. +..+.+|+||++++++|++|+++|.++.++++++|+++
T Consensus 6 ~~~~~~v~~l~G~l~~~~~~~l~~~~~~~~~~~---------~~~~~lilD~~~v~~iDss~~~~L~~~~~~~~~~~~~~ 76 (107)
T cd07042 6 EPPGVLIYRIDGPLFFGNAEYFKDRLLRLVDED---------PPLKVVILDLSAVNFIDSTAAEALEELVKDLRKRGVEL 76 (107)
T ss_pred cCCCEEEEEecCceEeehHHHHHHHHHHHhccC---------CCceEEEEECCCCchhhHHHHHHHHHHHHHHHHCCCEE
Confidence 446799999999999999999999987754321 12478999999999999999999999999999999999
Q ss_pred EEEcCCHHHHHHHHhCCCccccCCcceec
Q 006373 589 LLANPRSEVIKKLNNSKFIENIGQEWIYL 617 (648)
Q Consensus 589 ~l~~~~~~v~~~l~~~g~~~~~~~~~if~ 617 (648)
.++++++++++.+++.|+.+.++.+..+.
T Consensus 77 ~l~~~~~~~~~~l~~~g~~~~~~~~~~~~ 105 (107)
T cd07042 77 YLAGLNPQVRELLERAGLLDEIGEENFFP 105 (107)
T ss_pred EEecCCHHHHHHHHHcCcHHHhCccccee
Confidence 99999999999999999998887665544
No 25
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=99.40 E-value=9.9e-13 Score=115.44 Aligned_cols=100 Identities=28% Similarity=0.391 Sum_probs=90.1
Q ss_pred cCCcEEEEEecCceEEechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEE
Q 006373 509 SVPGVLILHIDAPIYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKL 588 (648)
Q Consensus 509 ~~~~v~ivrl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l 588 (648)
..+++.+++++|+++|.|++.|++.+.+.... +..+.+++||++++++|++|+..|.++.++++++|+++
T Consensus 9 ~~~~~~vi~~~G~l~~~~~~~~~~~l~~~~~~----------~~~~~vvidls~v~~iDssgl~~L~~~~~~~~~~~~~~ 78 (108)
T TIGR00377 9 VQEGVVIVRLSGELDAHTAPLLREKVTPAAER----------TGPRPIVLDLEDLEFMDSSGLGVLLGRYKQVRRVGGQL 78 (108)
T ss_pred EECCEEEEEEecccccccHHHHHHHHHHHHHh----------cCCCeEEEECCCCeEEccccHHHHHHHHHHHHhcCCEE
Confidence 34679999999999999999999999886653 24789999999999999999999999999999999999
Q ss_pred EEEcCCHHHHHHHHhCCCccccCCcceecCHHH
Q 006373 589 LLANPRSEVIKKLNNSKFIENIGQEWIYLTVAE 621 (648)
Q Consensus 589 ~l~~~~~~v~~~l~~~g~~~~~~~~~if~s~~~ 621 (648)
.++++++++++.|+++|+.+.+ .+|+|+++
T Consensus 79 ~l~~~~~~~~~~l~~~~l~~~~---~i~~~~~~ 108 (108)
T TIGR00377 79 VLVSVSPRVARLLDITGLLRII---PIYPTVEE 108 (108)
T ss_pred EEEeCCHHHHHHHHHhChhhee---ccCCCCCC
Confidence 9999999999999999999887 58887653
No 26
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=99.24 E-value=4.5e-11 Score=102.86 Aligned_cols=90 Identities=28% Similarity=0.364 Sum_probs=81.7
Q ss_pred CCcEEEEEecCceEEechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEE
Q 006373 510 VPGVLILHIDAPIYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLL 589 (648)
Q Consensus 510 ~~~v~ivrl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~ 589 (648)
.+++.+++++|+++|.|++.|++.+.+..++ +.+.+++|++++.++|++|+++|.++.++++++|.++.
T Consensus 6 ~~~~~ii~l~G~l~~~~~~~~~~~~~~~~~~-----------~~~~viid~~~v~~iDs~g~~~L~~l~~~~~~~g~~v~ 74 (99)
T cd07043 6 RGGVLVVRLSGELDAATAPELREALEELLAE-----------GPRRLVLDLSGVTFIDSSGLGVLLGAYKRARAAGGRLV 74 (99)
T ss_pred ECCEEEEEEeceecccchHHHHHHHHHHHHc-----------CCCEEEEECCCCCEEcchhHHHHHHHHHHHHHcCCeEE
Confidence 3478999999999999999999988775432 25899999999999999999999999999999999999
Q ss_pred EEcCCHHHHHHHHhCCCcccc
Q 006373 590 LANPRSEVIKKLNNSKFIENI 610 (648)
Q Consensus 590 l~~~~~~v~~~l~~~g~~~~~ 610 (648)
++++++++++.|++.|+.+.+
T Consensus 75 i~~~~~~~~~~l~~~gl~~~~ 95 (99)
T cd07043 75 LVNVSPAVRRVLELTGLDRLF 95 (99)
T ss_pred EEcCCHHHHHHHHHhCcceee
Confidence 999999999999999997765
No 27
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=99.09 E-value=6.9e-10 Score=98.85 Aligned_cols=98 Identities=26% Similarity=0.350 Sum_probs=85.7
Q ss_pred EEEEecCceEEechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcC
Q 006373 514 LILHIDAPIYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANP 593 (648)
Q Consensus 514 ~ivrl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~ 593 (648)
.++.+.|.|+..++..+++.+.+.+... ..+.+++|++.|+|+|++|++.|....+.++++|.++.+++.
T Consensus 15 ~vl~l~G~lD~~~a~~~~e~~~~~~~~~----------~~~~ivIDls~v~~~dS~gl~~L~~~~~~~~~~g~~~~l~~i 84 (117)
T COG1366 15 LVLPLIGELDAARAPALKETLLEVIAAS----------GARGLVIDLSGVDFMDSAGLGVLVALLKSARLRGVELVLVGI 84 (117)
T ss_pred EEEEeeEEEchHHHHHHHHHHHHHHhcC----------CCcEEEEECCCCceechHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 7999999999999999999998766543 456699999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCccccCCcceecCHHHHHH
Q 006373 594 RSEVIKKLNNSKFIENIGQEWIYLTVAEAVA 624 (648)
Q Consensus 594 ~~~v~~~l~~~g~~~~~~~~~if~s~~~Av~ 624 (648)
+|++++.++.+|+.+.+ ..+++.+++..
T Consensus 85 ~p~v~~~~~~~gl~~~~---~~~~~~~~~~~ 112 (117)
T COG1366 85 QPEVARTLELTGLDKSF---IITPTELEAAL 112 (117)
T ss_pred CHHHHHHHHHhCchhhc---ccccchHHHHH
Confidence 99999999999997765 35555444443
No 28
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.05 E-value=1.5e-07 Score=95.59 Aligned_cols=274 Identities=14% Similarity=0.165 Sum_probs=168.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh-hhhHHhhchHhHHHHHHhhhHHHHHHhhhhhhhCcccccCCCchHHHHHHHHhcCCC
Q 006373 154 VQLALTATFFAGVFQASLGFLR-LGFVVDFLSHATIVGFMGGAATVVCLQQLKGILGLVRFTHATDLQSVMRSVFSQTSQ 232 (648)
Q Consensus 154 ~~~~~~~~~l~Gi~~~llg~~~-lg~l~~~lp~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 232 (648)
...+.++-+.+|+..++.|++| ++|+++-+|+++..++++|+=+-+....++..-
T Consensus 102 ~~eaVGAfiVt~~li~l~G~~~~l~rl~~~IP~sla~AmlAGILL~F~l~a~~a~~------------------------ 157 (402)
T COG3135 102 FAEAVGAFIVTGALIILCGLTGPLTRLMRIIPPSLAAAMLAGILLRFGLKAFKALP------------------------ 157 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhccC------------------------
Confidence 4566778888999999999999 699999999999999999987776655444211
Q ss_pred CchhhhHHHHHHHHHHHHHhhhhcccccchhhccchhHHHHHHHHHHHHhccccCCCeEEeecCCCCC--CCCCCCcCCC
Q 006373 233 WRWESGVLGCCFLLFLLLTRYFSKKKATFFWINAMAPLTSVILGSVLVYFTDAERHGVQVIGQLKKGL--NPPSLSELDF 310 (648)
Q Consensus 233 ~~~~~~~i~~~~l~~l~~~~~~~~~~~~~~~~p~~~~Li~vvi~t~i~~~~~~~~~~~~~~g~ip~g~--p~p~~p~~~~ 310 (648)
.++ .+.+..+...++.|.+.+|+ +...++++|..++...|.-.. +..+.-. |....|+|++
T Consensus 158 ~~p---~l~lpmv~~~ll~r~f~pr~---------aV~aalvvgv~va~~~G~~~~-----~~~~~~~~~p~~v~P~Fs~ 220 (402)
T COG3135 158 TQP---LLVLPMVLAYLLARVFAPRY---------AVIAALVVGVLVAALLGDLHT-----ALVALEISTPTWVTPEFSF 220 (402)
T ss_pred CCh---HHHHHHHHHHHHHHHcCchH---------HHHHHHHHHHHHHHHhCcccc-----cccccccCcceeeCCcccH
Confidence 111 22222222333446555554 567778888888877752111 1111112 2223344433
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcccCCchHHHHHhhhhhhhhhcCCcccccccchhhHhhhc-----
Q 006373 311 GSPYLMTAVKTGVIIGVIALAEGIAVGRSFAMFKNYHIDGNKEMVAFGMMNIAGSCTSCYLTAGPFSRSAVNFNA----- 385 (648)
Q Consensus 311 ~~~~~~~~~~~~~~~aiv~~~~~~~~~~~~~~~~~~~~~~n~el~a~GiaNi~~slfg~~p~~~s~srs~~~~~~----- 385 (648)
..++.+++.+.++.+...-.-+-++-+.+||+.+++--+.+.|+.++.++.||++.++-.--.-++...-
T Consensus 221 -----~A~l~lalPL~lvtmasQN~pGiAvLka~gY~pp~~pl~~~TGl~sll~ApfG~~t~nLaAItAAic~gpdaHpD 295 (402)
T COG3135 221 -----AAMLSLALPLFLVTMASQNLPGIAVLKAAGYQPPPSPLIVATGLASLLSAPFGGHTVNLAAITAAICTGPDAHPD 295 (402)
T ss_pred -----HHHHHHhHHHHHHHHHhccCccceeehhcCCCCCCchHHHHhHHHHHHhcccccceecHHHHHHHHhcCCCCCCC
Confidence 3555666667777776654444455567899999999999999999999999999877433222222211
Q ss_pred CCCchhHHHHHHHHHHHHHHH---hhhhhhhchhHHHHHHHHHHHhhccCHHHHHHHhc-cCccch--hHHhhhhhhhhh
Q 006373 386 GCKTAVSNIVMATAVMITLLF---LTPLFHYTPLVVLSSIIIAAMLGLIDYEAVIHLWK-LDKFDF--IVCMSAYVGVVF 459 (648)
Q Consensus 386 G~~t~la~i~~a~i~ll~~l~---l~~ll~~iP~~vLa~ili~~~~~li~~~~~~~l~~-~~~~d~--~i~~~t~~~~~~ 459 (648)
-.|.-.+++++++.-++..+| +..++..+|++.+..+-=.+..+-+ .+.+..-.+ -+..|. +.+++|....-+
T Consensus 296 ~~rry~Aa~~agi~ylv~GlF~~~~~~l~~alP~~li~~lAGLALlg~~-~~~l~~A~~~~~~R~aAlvtF~VTaSG~tl 374 (402)
T COG3135 296 PARRYTAALVAGIFYLLAGLFGGALVGLMAALPASLIAALAGLALLGTL-GNSLQAALKDEREREAALVTFLVTASGLTL 374 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHH-HHHHHHHhcCcccchhhhhheeehhcccee
Confidence 135557999999999999998 5567889999866554323222222 222333333 222222 233344444445
Q ss_pred ccc---hhhHHHHHHHHH
Q 006373 460 GSV---EIGLVIAVTISL 474 (648)
Q Consensus 460 ~~~---~~Gl~~Gv~~sl 474 (648)
+|+ .+|++.|.+.-.
T Consensus 375 ~GIgaafWGLvaG~~~~~ 392 (402)
T COG3135 375 FGIGAAFWGLVAGLLVLA 392 (402)
T ss_pred ecccHHHHHHHHHHHHHH
Confidence 554 356666665443
No 29
>PF00955 HCO3_cotransp: HCO3- transporter family Only partial structure; InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells. Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO3 - transport modes. Anion exchanger proteins exchange HCO3 - for Cl- in a reversible, electroneutral manner []. Na+/HCO3 - co-transport proteins mediate the coupled movement of Na+ and HCO3 - across plasma membranes, often in an electrogenic manner []. Na- driven Cl-/HCO3 - exchange and K+/HCO3 - exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO3 - transporters that have been cloned to date (the anion exchangers and Na+/HCO3 - co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO3 - and are inhibited by a class of pharmacological agents called disulphonic stilbenes []. They share around ~25-30% sequence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains. This domain is found at the C terminus of many bicarbonate transport proteins. It is also found in some plant proteins responsible for boron transport []. In these proteins it covers almost the entire length of the sequence.; GO: 0006820 anion transport, 0016021 integral to membrane; PDB: 1BH7_A 1BTT_A 1BZK_A 1BTQ_A 1BTR_A 1BNX_A 1BTS_A.
Probab=99.05 E-value=3.9e-11 Score=130.75 Aligned_cols=345 Identities=10% Similarity=0.146 Sum_probs=26.1
Q ss_pred HHHHHhhhhhHHHHHHHhC------CCcchhhHhhhhhhhhhhhccCCCccccchhhHHHHHHHHhhhcccCCCCChhHH
Q 006373 80 ITIASLAVPQGISYANLAN------LPPILGLYSSFVPPLVYAMMGSSKDLAVGTVAVGSLLISSMLGKEVNPNENPKLY 153 (648)
Q Consensus 80 ltv~~~~iPq~~aya~lag------lpp~~gl~~~~~~~li~~~~Gss~~~~~Gp~a~~s~~~~~~~~~~~~~~~~~~~~ 153 (648)
+-.....+.-+++|+.+-+ +...-.+.++.+++++|++||+.|-.++|+++.+.+....... .. .....+|
T Consensus 40 ~flyfa~l~PaItFG~ll~~~T~~~~gv~e~l~~~~i~Gi~f~lf~gQPL~Ilg~TgP~~vf~~~l~~-~~--~~~~~~f 116 (510)
T PF00955_consen 40 LFLYFACLSPAITFGGLLGEATDGAIGVMEVLLSTAICGIIFSLFSGQPLTILGSTGPVLVFEKILYK-FC--KSYGLDF 116 (510)
T ss_dssp HHHHHHHHHHHHSSS-SS---------HHHHHHHHHHHHHHHHHCC----------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc--ccccccc
Confidence 3344556666777765432 3334568899999999999999999999988887664433221 11 1112356
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHhhchHhHHHHHHhhhHHHHHHhhhhhhhCcccccC-CCch-------------
Q 006373 154 VQLALTATFFAGVFQASLGFLRLGFVVDFLSHATIVGFMGGAATVVCLQQLKGILGLVRFTH-ATDL------------- 219 (648)
Q Consensus 154 ~~~~~~~~~l~Gi~~~llg~~~lg~l~~~lp~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~~-~~~~------------- 219 (648)
++.-..+.+.++++.++++.+...++++|+.+..-..|..-|++..+...++.+........ ..+.
T Consensus 117 l~~~~wig~w~~~~~~~~~~~~~s~lv~~~TRfTeEiF~~lIs~iFi~ea~~~l~~~~~~~p~~~~~~~~~~c~c~~~~~ 196 (510)
T PF00955_consen 117 LPFRAWIGIWTAIFLLVLAAFNASFLVRYITRFTEEIFALLISIIFIYEAIKKLVKIFKKYPLNSDYVTQYSCQCTPPEN 196 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 77778899999999999999999999999999999999999999999999988875521000 0000
Q ss_pred ----------------HH---HHHHHHhc----------------CCCCchhhhHHHHHHHHHHHHHhhhhcc--ccc--
Q 006373 220 ----------------QS---VMRSVFSQ----------------TSQWRWESGVLGCCFLLFLLLTRYFSKK--KAT-- 260 (648)
Q Consensus 220 ----------------~~---~~~~~~~~----------------~~~~~~~~~~i~~~~l~~l~~~~~~~~~--~~~-- 260 (648)
.. ...+-..+ .++.-..++++.+.++.+....+.+++. +++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~g~~~g~~c~~~~~~~p~taLlSliL~lgTf~la~~L~~fk~S~yf~~~v 276 (510)
T PF00955_consen 197 SNNSTLNPWTNLNNGSINWSNLSNSECENINGELVGTSCDDHVQYQPDTALLSLILALGTFWLAYTLRQFKNSPYFPRWV 276 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCcCccHHH
Confidence 00 00000000 0011122334444444444434332211 111
Q ss_pred chhhccchhHHHHHHHHHHHHhccccCCCeEEeecCCCCCCCCCCCc--------C-CCChhhHHHHHHHHHHHHHHHHH
Q 006373 261 FFWINAMAPLTSVILGSVLVYFTDAERHGVQVIGQLKKGLNPPSLSE--------L-DFGSPYLMTAVKTGVIIGVIALA 331 (648)
Q Consensus 261 ~~~~p~~~~Li~vvi~t~i~~~~~~~~~~~~~~g~ip~g~p~p~~p~--------~-~~~~~~~~~~~~~~~~~aiv~~~ 331 (648)
+..+...+..+++++.+.+.+.++.+.... ++|.++.+ ..++ + +........++..++.+++.-+.
T Consensus 277 R~~isDf~v~iaI~~~~~~~~~~~~~~~kL----~vp~~f~p-t~~~~r~W~v~p~~~~p~w~~~aA~~palll~iL~F~ 351 (510)
T PF00955_consen 277 REIISDFGVPIAILIMTLVDYLFGVDTPKL----NVPSSFKP-TSPGKRGWFVNPFGSLPWWAIFAAIIPALLLTILFFM 351 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhHHhhHHHHHHHHHHHHHHHhccccccc----CCCCCCCC-CCCCCCCeecCcccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 112455677788888888877765221111 34444431 1111 1 11112233455557777888888
Q ss_pred HHHHHHhhhhcccC---cccCCchHHHHHhhhhhhhhhcCCcccccccchhhHhhhcC-----------------C-Cch
Q 006373 332 EGIAVGRSFAMFKN---YHIDGNKEMVAFGMMNIAGSCTSCYLTAGPFSRSAVNFNAG-----------------C-KTA 390 (648)
Q Consensus 332 ~~~~~~~~~~~~~~---~~~~~n~el~a~GiaNi~~slfg~~p~~~s~srs~~~~~~G-----------------~-~t~ 390 (648)
|+--++....++++ +..-..-+|+..|+.|.++|++|-.+.+++..+|....++= + .+|
T Consensus 352 DqnIts~ivn~~e~kLkKg~gyH~DL~llgi~~~v~sllGLPw~~aa~~~S~~Hv~sL~~~~~~~~pGe~~~i~~V~EqR 431 (510)
T PF00955_consen 352 DQNITSLIVNRPENKLKKGSGYHLDLFLLGIITLVCSLLGLPWMNAATPQSPMHVRSLAVESETSAPGEKPKIVGVREQR 431 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhHhHHHhCChhhccCCCCcccHHHHHHHHHHHHHHHcCCCCcccCccCCHHHhCcccEEeccccCCCCCeeCeEEEec
Confidence 87655554444322 22344678999999999999999999998888887654421 1 468
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhchhHHHHHHHHHHHhhccCH
Q 006373 391 VSNIVMATAVMITLLFLTPLFHYTPLVVLSSIIIAAMLGLIDY 433 (648)
Q Consensus 391 la~i~~a~i~ll~~l~l~~ll~~iP~~vLa~ili~~~~~li~~ 433 (648)
+++++.++++.+.+ ++.|++.+||++||.|+.++.|+.-++-
T Consensus 432 vT~l~~~~Ligls~-~l~pvL~~IP~~VL~GvFlymG~~sL~g 473 (510)
T PF00955_consen 432 VTGLLVHLLIGLSL-FLLPVLKLIPMPVLYGVFLYMGVTSLSG 473 (510)
T ss_dssp -------------------------------------------
T ss_pred ccHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHhheeeeecC
Confidence 99999988766555 6789999999999999999988776643
No 30
>PF13466 STAS_2: STAS domain
Probab=98.91 E-value=4.2e-09 Score=86.97 Aligned_cols=79 Identities=24% Similarity=0.365 Sum_probs=73.1
Q ss_pred EEecCceEEechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcCCH
Q 006373 516 LHIDAPIYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANPRS 595 (648)
Q Consensus 516 vrl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~~~ 595 (648)
++++|.+++.+++.+++.+.++.+ +.+.+++|+++++++|++|++.|..+.+.++++|.++.+.++++
T Consensus 1 l~l~G~l~~~~~~~l~~~l~~~~~------------~~~~v~lDls~v~~iDsagl~lL~~~~~~~~~~g~~~~l~~~~~ 68 (80)
T PF13466_consen 1 LRLSGELDIATAPELRQALQALLA------------SGRPVVLDLSGVEFIDSAGLQLLLAAARRARARGRQLRLTGPSP 68 (80)
T ss_pred CEEEEEEeHHHHHHHHHHHHHHHc------------CCCeEEEECCCCCeecHHHHHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 478999999999999999988663 12789999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC
Q 006373 596 EVIKKLNNSKF 606 (648)
Q Consensus 596 ~v~~~l~~~g~ 606 (648)
.+++.++..|+
T Consensus 69 ~~~~ll~~~gl 79 (80)
T PF13466_consen 69 ALRRLLELLGL 79 (80)
T ss_pred HHHHHHHHhCc
Confidence 99999999987
No 31
>PF11840 DUF3360: Protein of unknown function (DUF3360); InterPro: IPR021794 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 489 to 517 amino acids in length.
Probab=98.04 E-value=0.0017 Score=66.64 Aligned_cols=254 Identities=15% Similarity=0.118 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHHHHhhhh-hhHHhhchHhHHHHHHhhhHHHHHHhhhhhhhCcccccCCCchHHHHHHHHhcCCCCchh
Q 006373 158 LTATFFAGVFQASLGFLRL-GFVVDFLSHATIVGFMGGAATVVCLQQLKGILGLVRFTHATDLQSVMRSVFSQTSQWRWE 236 (648)
Q Consensus 158 ~~~~~l~Gi~~~llg~~~l-g~l~~~lp~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (648)
.++.++.|++-++++.+|- +++++.-++-|-+|.+--.|+.=..+|++.++..... ++ ..+.
T Consensus 145 Lalgilvg~fGlil~~~kggS~L~~LTs~gv~ggLllylG~~G~~~qi~kl~~wa~~----------------~~-~~~i 207 (492)
T PF11840_consen 145 LALGILVGVFGLILSIFKGGSKLVNLTSHGVCGGLLLYLGFVGLIGQIKKLFAWANG----------------FD-MGYI 207 (492)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHhhhcCccccceeeeehhhhHHHHHHHHHHHHhc----------------cC-ccHH
Confidence 3567889999999999996 5678999999999988888888888888877643211 00 1222
Q ss_pred hhHHHHHHHHHHHHHhhhhcccccchhhccchhHHHHHHHHHHHHhccccCCCeEEeecCCCCCCCCCCCc--------C
Q 006373 237 SGVLGCCFLLFLLLTRYFSKKKATFFWINAMAPLTSVILGSVLVYFTDAERHGVQVIGQLKKGLNPPSLSE--------L 308 (648)
Q Consensus 237 ~~~i~~~~l~~l~~~~~~~~~~~~~~~~p~~~~Li~vvi~t~i~~~~~~~~~~~~~~g~ip~g~p~p~~p~--------~ 308 (648)
.+++-++++++.....+++|||. +.-++-+++.++++.+|. +++... +.|+|... |. +
T Consensus 208 ~fvvi~~tiv~Ya~L~k~~KrWL--------aIPl~~~~a~~~a~~lGa---~f~f~t--~pglp~ln-P~YWWge~tGw 273 (492)
T PF11840_consen 208 AFVVIIVTIVLYAYLAKIEKRWL--------AIPLCSILAGVLAFALGA---PFEFTT--EPGLPNLN-PMYWWGEETGW 273 (492)
T ss_pred HHHHHHHHHHHHHHHHHhccchh--------hhhHHHHHHHHHHHHcCC---Cceeec--CCCCCCCC-CcccccCCccc
Confidence 33333334444333444445543 222333445555666653 222211 22333211 10 0
Q ss_pred CCCh---hhHHHHHHHHHHHHHHHHHHHHHHHhhhhc------ccCcccCCchHHHHHhhhhhhhhhcCCcccccccchh
Q 006373 309 DFGS---PYLMTAVKTGVIIGVIALAEGIAVGRSFAM------FKNYHIDGNKEMVAFGMMNIAGSCTSCYLTAGPFSRS 379 (648)
Q Consensus 309 ~~~~---~~~~~~~~~~~~~aiv~~~~~~~~~~~~~~------~~~~~~~~n~el~a~GiaNi~~slfg~~p~~~s~srs 379 (648)
.... +.+...++.++.....=.-|.++- +.+.+ .++...|.|+.+....+=|++++.+||--.++|...-
T Consensus 274 ~LglP~~~hfiav~PFAiLAVaMWSpDflgh-rvFqelnypk~~~kvlMnvDDTm~~~siRQ~vGs~lGGgN~~SsWgTy 352 (492)
T PF11840_consen 274 QLGLPTLEHFIAVLPFAILAVAMWSPDFLGH-RVFQELNYPKETKKVLMNVDDTMTMCSIRQIVGSILGGGNIASSWGTY 352 (492)
T ss_pred ccCCCcHHHHHHhccHHHHHHHHhCchHHHH-HHHHHhcCchhhcceeecccchhHHHHHHHHHhhcccCCcccccchhh
Confidence 0111 223334443332111111122221 33332 1223468899999999999999999997766554443
Q ss_pred hHhhhcCCCc--hhHHHHHHHHHHHHHHHhhhhhhhchhHHHHHHHHHHHhhccCHHHHHHHhccCcc
Q 006373 380 AVNFNAGCKT--AVSNIVMATAVMITLLFLTPLFHYTPLVVLSSIIIAAMLGLIDYEAVIHLWKLDKF 445 (648)
Q Consensus 380 ~~~~~~G~~t--~la~i~~a~i~ll~~l~l~~ll~~iP~~vLa~ili~~~~~li~~~~~~~l~~~~~~ 445 (648)
..-.+=+|- +-..+.++++++++.+..-|.=-.+=.+|+...+++-++-=+-..+. +.||.+|.
T Consensus 353 -mIPaaIaKRPIpggAiLtg~~Ci~~av~GyPMdlavw~Pvl~vALlvGVflPLleAGm-qm~r~~k~ 418 (492)
T PF11840_consen 353 -MIPAAIAKRPIPGGAILTGLLCIVAAVWGYPMDLAVWPPVLRVALLVGVFLPLLEAGM-QMTRKGKT 418 (492)
T ss_pred -hhhHHHhcCCCCchHHHHHHHHHHHHHhcCcchhhhcccHHHHHHHHHHHHHHHHHHH-HHHhcCCc
Confidence 333333444 45678888888888877666544444556666666633321223333 44555544
No 32
>COG3113 Predicted NTP binding protein (contains STAS domain) [General function prediction only]
Probab=97.32 E-value=0.00088 Score=55.90 Aligned_cols=84 Identities=13% Similarity=0.188 Sum_probs=65.4
Q ss_pred EEEecCceEEechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcCC
Q 006373 515 ILHIDAPIYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANPR 594 (648)
Q Consensus 515 ivrl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~~ 594 (648)
.+.+.|+|+=-..-.+-+..... .+....+=+|++++..+||+|+..|.++.+.++++|..+.+++++
T Consensus 13 tL~LsGeL~r~tl~~lw~~r~~~------------~~~~~~~~idLs~v~rvDSaglALL~~~~~~~k~~g~~~~L~~~p 80 (99)
T COG3113 13 TLVLSGELDRDTLLPLWSQREAQ------------LKQLDTVRIDLSGVSRVDSAGLALLLHLIRLAKKQGNAVTLTGVP 80 (99)
T ss_pred eEEEeccccHHHHHHHHHHHHHH------------ccccCeEEEehhhcceechHHHHHHHHHHHHHHHcCCeeEEecCc
Confidence 36778888644433332222221 123468999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcccc
Q 006373 595 SEVIKKLNNSKFIENI 610 (648)
Q Consensus 595 ~~v~~~l~~~g~~~~~ 610 (648)
++++...+..|+.+.+
T Consensus 81 ~~L~tLa~Ly~l~~~l 96 (99)
T COG3113 81 EQLRTLAELYNLSDWL 96 (99)
T ss_pred HHHHHHHHHhCcHhhh
Confidence 9999999999886543
No 33
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=93.62 E-value=0.31 Score=53.34 Aligned_cols=19 Identities=11% Similarity=0.087 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 006373 321 TGVIIGVIALAEGIAVGRS 339 (648)
Q Consensus 321 ~~~~~aiv~~~~~~~~~~~ 339 (648)
.+++..+++..+..++++.
T Consensus 242 i~lv~~~es~g~~~a~a~~ 260 (415)
T TIGR00801 242 VAIVSLVESIGDITATADV 260 (415)
T ss_pred HHHHHHHHhhhHHHHHHHH
Confidence 3334444444444444443
No 34
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=93.22 E-value=1.4 Score=50.01 Aligned_cols=108 Identities=15% Similarity=0.112 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCcccCCchHHHHHhhhhhhhhhcCCcccccccchhhHhhhc--CC----Cc--
Q 006373 318 AVKTGVIIGVIALAEGIAVGRSFAMFKNYHIDGNKEMVAFGMMNIAGSCTSCYLTAGPFSRSAVNFNA--GC----KT-- 389 (648)
Q Consensus 318 ~~~~~~~~aiv~~~~~~~~~~~~~~~~~~~~~~n~el~a~GiaNi~~slfg~~p~~~s~srs~~~~~~--G~----~t-- 389 (648)
=+..++..+++.+=++++.+.. + | .++...|++-=++-++.++|||.|.-.+-..++..... .. .+
T Consensus 24 Dl~AGltva~valP~ama~a~~-a---G--v~p~~GLyas~i~~~v~alfGgs~~~i~GPt~a~~~v~a~~i~~~~~~g~ 97 (554)
T COG0659 24 DLLAGLTVAAVALPLAMAFAIA-A---G--VPPEAGLYASIVAGIIYALFGGSRGLISGPTGAFAVVLAAVIASLVETGL 97 (554)
T ss_pred HHHHHHHHHHHHhHHHHHHHHH-c---C--CCHHHHHHHHHHHHHHHHHHcCCccceeccchhhHHHHHHHHHHHHHHHH
Confidence 3445666777777777777662 2 2 88999999999999999999999876443333322211 11 11
Q ss_pred ---hhHHHHHHHHHHHHHHH-hhhhhhhchhHHHHHHHHHHHhhcc
Q 006373 390 ---AVSNIVMATAVMITLLF-LTPLFHYTPLVVLSSIIIAAMLGLI 431 (648)
Q Consensus 390 ---~la~i~~a~i~ll~~l~-l~~ll~~iP~~vLa~ili~~~~~li 431 (648)
-.+.+++|++.+++.++ ++.+..++|.+|+-|.+--.++-++
T Consensus 98 ~~~~~~tllaGv~~i~~G~lRLG~li~fip~pVl~Gf~~Giai~I~ 143 (554)
T COG0659 98 ALAFLATLLAGVFQILLGLLRLGRLIRFIPRPVLIGFTAGIAILII 143 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHH
Confidence 24667778888888877 9999999999999987655444443
No 35
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=93.06 E-value=2.9 Score=47.68 Aligned_cols=111 Identities=10% Similarity=0.073 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcccCCchHHHHHhhhhhhhhhcCCcccccccchhhHhhh-------cCC
Q 006373 315 LMTAVKTGVIIGVIALAEGIAVGRSFAMFKNYHIDGNKEMVAFGMMNIAGSCTSCYLTAGPFSRSAVNFN-------AGC 387 (648)
Q Consensus 315 ~~~~~~~~~~~aiv~~~~~~~~~~~~~~~~~~~~~~n~el~a~GiaNi~~slfg~~p~~~s~srs~~~~~-------~G~ 387 (648)
+..=+..++..+++.+-+.++.+... ..++...|.+-.+..++.++||+.|....-..+..... .|.
T Consensus 14 l~~Di~aGltv~~~~iP~~~ayA~la------glpp~~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~~~v~~~~~ 87 (563)
T TIGR00815 14 FKGDLMAGLTVGILLIPQAMAYAILA------GLSPIYGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGSVIARVGL 87 (563)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHc------CCCchhhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHHHHHHHhcC
Confidence 44445566777888888888876532 35677789999999999999999887655444443222 222
Q ss_pred Cch----------hHHHHHHHHHHHHHHH-hhhhhhhchhHHHHHHHHHHHhhcc
Q 006373 388 KTA----------VSNIVMATAVMITLLF-LTPLFHYTPLVVLSSIIIAAMLGLI 431 (648)
Q Consensus 388 ~t~----------la~i~~a~i~ll~~l~-l~~ll~~iP~~vLa~ili~~~~~li 431 (648)
... ..++++|++.+++.++ ++.+..++|.+|+.|.+--+++.++
T Consensus 88 ~~~~~~~~~~~a~~l~~l~Gi~~~~~g~lrlG~l~~~is~~Vi~Gf~~g~a~~i~ 142 (563)
T TIGR00815 88 QYLFDCDAIRLAFTLTLLAGIFQVILGLLRLGFLIEFLSHAVISGFMTGAAITIG 142 (563)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHHHH
Confidence 221 6778888888888888 9999999999999887666555544
No 36
>PF11964 SpoIIAA-like: SpoIIAA-like; InterPro: IPR021866 This family of proteins is functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 120 to 132 amino acids in length. This protein has a single completely conserved residue A that may be functionally important. ; PDB: 2Q3L_B 2OOK_A 3BL4_A.
Probab=92.12 E-value=0.073 Score=46.22 Aligned_cols=105 Identities=9% Similarity=-0.024 Sum_probs=63.4
Q ss_pred cEEEEEecCceEEechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEec-CCCccchHHHHHHHHHHHHHHHcCCEEEE
Q 006373 512 GVLILHIDAPIYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMS-SVGSIDTSGISMFEEIKKVVDRRGLKLLL 590 (648)
Q Consensus 512 ~v~ivrl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s-~v~~IDssgl~~L~~l~~~~~~~gi~l~l 590 (648)
++..++++|.+.-...+++.+.+.+.+++ .+.-.+.+|++ .+..++..+.....++.....++=-++.+
T Consensus 1 ~il~v~~~g~~t~ed~~~~~~~~~~~~~~----------~~~~~ll~d~~~~~~~~~~~a~~~~~~~~~~~~~~~~r~Av 70 (109)
T PF11964_consen 1 NILAVRVSGKLTEEDYKELLPALEELIAD----------HGKIRLLVDLRRDFEGWSPEARWEDAKFGLKHLKHFRRIAV 70 (109)
T ss_dssp S-EEEEEEEEE-HHHHHHHHHHHHHHHTT----------SSSEEEEEEEC-CEEEEHHHHHHHHHHHHCCCCGGEEEEEE
T ss_pred CEEEEEEeeeeCHHHHHHHHHHHHHHHhc----------CCceEEEEEecCccCCCCHHHHHHHHHhchhhhcccCEEEE
Confidence 46778999998877777777777665432 34578999999 88888887655554443331122236777
Q ss_pred EcCCHHHHHHHHhCCCccccCCccee--cCHHHHHHHHH
Q 006373 591 ANPRSEVIKKLNNSKFIENIGQEWIY--LTVAEAVAACN 627 (648)
Q Consensus 591 ~~~~~~v~~~l~~~g~~~~~~~~~if--~s~~~Av~~~~ 627 (648)
++.++-.+...+..+.. .-.+.++| .+.+||.+|.+
T Consensus 71 V~~~~~~~~~~~~~~~~-~~~~~~~F~~~~~~~A~~WL~ 108 (109)
T PF11964_consen 71 VGDSEWIRMIANFFAAF-PPIEVRYFPPDEEEEALAWLR 108 (109)
T ss_dssp E-SSCCCHHHHHHHHHH--SSEEEEE--SSHHHHHHHHC
T ss_pred EECcHHHHHHHHHHHhc-CCCceEEECCCCHHHHHHHHc
Confidence 76655333222222211 11234899 99999999975
No 37
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=91.06 E-value=1 Score=36.27 Aligned_cols=66 Identities=21% Similarity=0.324 Sum_probs=49.0
Q ss_pred chHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHH-HHHHHHHHHH--HcCCEEEEEcCCHHHHHHHH
Q 006373 526 NASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGIS-MFEEIKKVVD--RRGLKLLLANPRSEVIKKLN 602 (648)
Q Consensus 526 na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~-~L~~l~~~~~--~~gi~l~l~~~~~~v~~~l~ 602 (648)
+.+++++.+.+.++.. +.|+|||+++..+-+|-++ ++..+.+++. +...++.+.+.++++.+.++
T Consensus 2 ~G~~~~~~i~~~l~~~------------~~V~lDF~gv~~~~ssFl~eafg~l~~~~~~~~~~~~l~~~~~~~~~~~~I~ 69 (74)
T PF14213_consen 2 DGERLRDEIEPALKEG------------EKVVLDFEGVESITSSFLNEAFGQLVREFGEEEIKKRLKFKNANESIKEMIK 69 (74)
T ss_pred ChHHHHHHHHHHHhcC------------CeEEEECCCcccccHHHHHHHHHHHHHHcCHHHHhheeEEecCCHHHHHHHH
Confidence 3567777777766543 4499999999999888876 4666666554 33568889999999988887
Q ss_pred h
Q 006373 603 N 603 (648)
Q Consensus 603 ~ 603 (648)
+
T Consensus 70 ~ 70 (74)
T PF14213_consen 70 R 70 (74)
T ss_pred H
Confidence 6
No 38
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=90.07 E-value=0.72 Score=39.61 Aligned_cols=72 Identities=17% Similarity=0.122 Sum_probs=58.6
Q ss_pred EEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcCC-----HHHHHHHHhCCCccccCCcceecCHHHHHHHHHHh
Q 006373 556 VILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANPR-----SEVIKKLNNSKFIENIGQEWIYLTVAEAVAACNFM 629 (648)
Q Consensus 556 vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~~-----~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~~~~ 629 (648)
+++|+.+|-+-+...+.-=.+..+.++++|++++|..-+ .+..++|++.|+. +.+++++.+...+.++.++.
T Consensus 1 ~l~D~dGvl~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~--~~~~~i~ts~~~~~~~l~~~ 77 (101)
T PF13344_consen 1 FLFDLDGVLYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIP--VDEDEIITSGMAAAEYLKEH 77 (101)
T ss_dssp EEEESTTTSEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT----GGGEEEHHHHHHHHHHHH
T ss_pred CEEeCccEeEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcC--CCcCEEEChHHHHHHHHHhc
Confidence 579999999999888888899999999999999887432 5788999999985 55678999988888888774
No 39
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=90.06 E-value=9.8 Score=41.46 Aligned_cols=109 Identities=13% Similarity=0.096 Sum_probs=63.2
Q ss_pred HHHHHhhhhhHHH----HHHHhCCCc-----chhhHhhhhhhhhhhhccCCCccccchhhHHHHHHHHhhhcccCCCCCh
Q 006373 80 ITIASLAVPQGIS----YANLANLPP-----ILGLYSSFVPPLVYAMMGSSKDLAVGTVAVGSLLISSMLGKEVNPNENP 150 (648)
Q Consensus 80 ltv~~~~iPq~~a----ya~laglpp-----~~gl~~~~~~~li~~~~Gss~~~~~Gp~a~~s~~~~~~~~~~~~~~~~~ 150 (648)
++.+++..-+.++ .+...|-++ ..++.+--+++++.++||+.+.-.. +..+...... +..
T Consensus 225 ~~~~lv~~~esig~~~a~~~~~g~~~~~~~~~~~l~~~Gi~~i~aglfG~~p~t~~---~~~~~~~~~t--g~~------ 293 (406)
T TIGR03173 225 IIVYLVSMVETTGDFLALGEITGRPITEKDLAGGLRADGLGSALGGLFNTFPYTSF---SQNVGLVQLT--GVK------ 293 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCchhccchHHhccHHHHHHHHhCCCCCcch---hhhHHHHHHh--CCC------
Confidence 3444444444444 344455432 2689999999999999998663332 2211111110 000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHhhchHhHHHHHHhhhHHHHHHhhhh
Q 006373 151 KLYVQLALTATFFAGVFQASLGFL-RLGFVVDFLSHATIVGFMGGAATVVCLQQLK 205 (648)
Q Consensus 151 ~~~~~~~~~~~~l~Gi~~~llg~~-~lg~l~~~lp~~Vi~Gf~~gigl~i~~~ql~ 205 (648)
.. .....+|++.++++++ +++.+..++|.||++|.+...=-.+..+.++
T Consensus 294 sr------~~~~~~~~~lil~~l~~~~~~l~~~iP~~vlgg~~l~~~~~i~~~g~~ 343 (406)
T TIGR03173 294 SR------YVVAAAGVILVLLGLFPKLAALVASIPQPVLGGAGLVMFGMVAASGIR 343 (406)
T ss_pred ch------HhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 01 1335678888888877 5899999999999999554322233333333
No 40
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=89.86 E-value=7.5 Score=42.65 Aligned_cols=117 Identities=5% Similarity=-0.120 Sum_probs=73.6
Q ss_pred hhhHHHHHHhhhhhHHH----HHHHhCCCc------chhhHhhhhhhhhhhhccCCCccccchhhHHHHHHHHhhhcccC
Q 006373 76 LLAGITIASLAVPQGIS----YANLANLPP------ILGLYSSFVPPLVYAMMGSSKDLAVGTVAVGSLLISSMLGKEVN 145 (648)
Q Consensus 76 i~aGltv~~~~iPq~~a----ya~laglpp------~~gl~~~~~~~li~~~~Gss~~~~~Gp~a~~s~~~~~~~~~~~~ 145 (648)
++.-+.++++..-+.++ .+.+.+-++ .-|+..--+++++.++||+.+.-+.+-......+++ +.+
T Consensus 242 il~~~~~~lv~~~e~iG~~~a~~~~~~~~~~~~~~l~rgi~~dGi~s~laglfg~~p~tt~sqNvGvi~~Tg-V~S---- 316 (433)
T PRK11412 242 ILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTG-DYR---- 316 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccchhhccHHHHHHHhcCCCCCCchhhhhhhhhhcC-Cch----
Confidence 44444445544444333 334444322 258999999999999999866544433222111110 000
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHhhchHhHHHHHHhhhHHHHHHhhhhhhhC
Q 006373 146 PNENPKLYVQLALTATFFAGVFQASLGFL-RLGFVVDFLSHATIVGFMGGAATVVCLQQLKGILG 209 (648)
Q Consensus 146 ~~~~~~~~~~~~~~~~~l~Gi~~~llg~~-~lg~l~~~lp~~Vi~Gf~~gigl~i~~~ql~~~~G 209 (648)
--....+|++++++|++ |++.+..-+|.||++|.+...--.+..++++.+-+
T Consensus 317 ------------R~v~~~aa~ilillgl~PK~~alia~IP~pVlGg~~~~~Fg~I~~~Gi~~l~~ 369 (433)
T PRK11412 317 ------------RRSFIYGSVMCLLVALIPALTRLFCSIPLPVSSAVMLVSYLPLLGSALVFSQQ 369 (433)
T ss_pred ------------hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12445678888999988 58999999999999998877766777777766543
No 41
>PRK10720 uracil transporter; Provisional
Probab=88.51 E-value=1.9 Score=47.40 Aligned_cols=133 Identities=12% Similarity=0.060 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHhccccCCCeEEeecCCCCCCCCCCCcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcccC
Q 006373 270 LTSVILGSVLVYFTDAERHGVQVIGQLKKGLNPPSLSELDFGSPYLMTAVKTGVIIGVIALAEGIAVGRSFAMFKNYHID 349 (648)
Q Consensus 270 Li~vvi~t~i~~~~~~~~~~~~~~g~ip~g~p~p~~p~~~~~~~~~~~~~~~~~~~aiv~~~~~~~~~~~~~~~~~~~~~ 349 (648)
.+.++++.++++...+- .+......+. .-++..+|.+.. +.+-...+...+..+++.+.|+++...+.++..+++..
T Consensus 181 ~~~iLigIvvG~ila~~-lG~~d~~~v~-~a~~~~lP~~~~-P~fd~~~il~l~~~~lv~~~EsiG~~~a~~~~~~~~~~ 257 (428)
T PRK10720 181 IIPILIGVLVGYALSFA-MGMVDTTPII-EAHWFALPTFYT-PRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLL 257 (428)
T ss_pred HhHHHHHHHHHHHHHHH-hcCCCHHHhh-cCccccCCCCCC-CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 34455555555555321 1221111111 133355665433 23334455566788889999999999999887776654
Q ss_pred CchHHHHHhhhhhhhhhcCCcccccccchhhHhhhcCCCchhHHHHHHHHHHHHHH
Q 006373 350 GNKEMVAFGMMNIAGSCTSCYLTAGPFSRSAVNFNAGCKTAVSNIVMATAVMITLL 405 (648)
Q Consensus 350 ~n~el~a~GiaNi~~slfg~~p~~~s~srs~~~~~~G~~t~la~i~~a~i~ll~~l 405 (648)
.++++-..=.++=++++++++-.+...+..+-|...+++|+.++-....+-...++
T Consensus 258 ~~~~~~r~l~adGlatii~glfG~~p~tty~en~g~ia~T~v~sr~v~~~a~~~li 313 (428)
T PRK10720 258 RDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIIAI 313 (428)
T ss_pred CCccccchHhhhhHHHHHHHhcCCCCccccccccceeeecccchhHHHHHHHHHHH
Confidence 56788888899999999999998888888888999999999999887765555443
No 42
>PRK11660 putative transporter; Provisional
Probab=85.58 E-value=24 Score=40.39 Aligned_cols=109 Identities=16% Similarity=0.172 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcccCCchHHHHHhhhhhhhhhcCCcccccccchhhHhhhc-------CC
Q 006373 315 LMTAVKTGVIIGVIALAEGIAVGRSFAMFKNYHIDGNKEMVAFGMMNIAGSCTSCYLTAGPFSRSAVNFNA-------GC 387 (648)
Q Consensus 315 ~~~~~~~~~~~aiv~~~~~~~~~~~~~~~~~~~~~~n~el~a~GiaNi~~slfg~~p~~~s~srs~~~~~~-------G~ 387 (648)
+..=+..++..+++.+-+.++.+.. + | ..+.-.|++--+..++.++||+.+....-..+...... |.
T Consensus 29 l~~D~iAGltv~~~~iPq~mayA~l-a---g--~pp~~GLysa~~~~~vyal~Gss~~~~~Gp~a~~~~~~~~~~~~~~~ 102 (568)
T PRK11660 29 FTRDLIAGITVGIIAIPLAMALAIA-S---G--VPPQYGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVILYPVSQQFGL 102 (568)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-c---C--CChHHHHHHHHHHHHHHHHhcCCCCcccChhHHHHHHHHHHHHHhhH
Confidence 3344456677788888888887743 2 2 44445799999999999999999876544333322111 11
Q ss_pred C-chhHHHHHHHHHHHHHHH-hhhhhhhchhHHHHHHHHHHHhh
Q 006373 388 K-TAVSNIVMATAVMITLLF-LTPLFHYTPLVVLSSIIIAAMLG 429 (648)
Q Consensus 388 ~-t~la~i~~a~i~ll~~l~-l~~ll~~iP~~vLa~ili~~~~~ 429 (648)
. .-.+.+++|++.++..++ ++.+..++|.+|+.|.+--+++-
T Consensus 103 ~~~~~~~~l~Gii~~l~gllrlG~l~~fip~pVi~Gf~~g~al~ 146 (568)
T PRK11660 103 AGLLVATLMSGIILILMGLARLGRLIEYIPLSVTLGFTSGIGIV 146 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHhcCcHHHHHHHHHHHHHH
Confidence 1 123577888888888888 89999999999998876655553
No 43
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=82.87 E-value=2 Score=41.35 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=62.3
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEc-----CCHHHHHHHHhCCCccccCCcceecCHHHHHHHH
Q 006373 552 GLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLAN-----PRSEVIKKLNNSKFIENIGQEWIYLTVAEAVAAC 626 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~-----~~~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~ 626 (648)
.++.+.+|.|++-|+.-.++--=.+..+.+++.+.++-|+. -+..+.+.|+|.||. +.++.+|.++-.|.+.+
T Consensus 6 ~v~gvLlDlSGtLh~e~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~--v~eeei~tsl~aa~~~~ 83 (262)
T KOG3040|consen 6 AVKGVLLDLSGTLHIEDAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFD--VSEEEIFTSLPAARQYL 83 (262)
T ss_pred ccceEEEeccceEecccccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCC--ccHHHhcCccHHHHHHH
Confidence 47889999999999977777767777888888899998873 245688999999994 45678999999999998
Q ss_pred HH
Q 006373 627 NF 628 (648)
Q Consensus 627 ~~ 628 (648)
++
T Consensus 84 ~~ 85 (262)
T KOG3040|consen 84 EE 85 (262)
T ss_pred Hh
Confidence 87
No 44
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=76.66 E-value=7.5 Score=42.49 Aligned_cols=128 Identities=13% Similarity=0.114 Sum_probs=92.8
Q ss_pred hhHHHHHHHHHHHHhccccCCCeEEeecCCCCCCCCCCCcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCc
Q 006373 268 APLTSVILGSVLVYFTDAERHGVQVIGQLKKGLNPPSLSELD-FGSPYLMTAVKTGVIIGVIALAEGIAVGRSFAMFKNY 346 (648)
Q Consensus 268 ~~Li~vvi~t~i~~~~~~~~~~~~~~g~ip~g~p~p~~p~~~-~~~~~~~~~~~~~~~~aiv~~~~~~~~~~~~~~~~~~ 346 (648)
.-.+.+++|.+++|...+ -.|...... ....|...+|++. |...+-..++...+.++++++.|+++--++.++..++
T Consensus 197 ~~~i~ILiGlv~G~~la~-~~G~vdf~~-v~~a~w~~~P~~~~fg~~F~~~ail~m~~v~iV~~~E~~G~i~A~~~itg~ 274 (451)
T COG2233 197 LRRIPILIGLVVGYLLAL-FMGMVDFSG-VAEAPWFALPTPFYFGMAFDWGAILTMLPVAIVTIVEHTGDITATGEITGR 274 (451)
T ss_pred HHHHHHHHHHHHHHHHHH-HhCCcCccc-cccCceeeCCcccCCCeeecHHHHHHHHHHHHHHHHHHhhhhhhHHhHhCC
Confidence 356777888888887743 123222222 2235566677653 2235556777788899999999999999999999999
Q ss_pred ccCCchHHHHHhhhhhhhhhcCCcccccccchhhHhhhcCC--CchhHHHHHHHH
Q 006373 347 HIDGNKEMVAFGMMNIAGSCTSCYLTAGPFSRSAVNFNAGC--KTAVSNIVMATA 399 (648)
Q Consensus 347 ~~~~n~el~a~GiaNi~~slfg~~p~~~s~srs~~~~~~G~--~t~la~i~~a~i 399 (648)
+.+.++.+..--.++=+++++++.-++ +.+|...++.|. -|+..+-.....
T Consensus 275 ~~~~~~~l~rg~~aDGlat~iag~fg~--~p~TtfaqNiGvv~lT~v~Sr~V~~~ 327 (451)
T COG2233 275 DLDGKPRLRRGLLADGLATLIAGLFGG--FPNTTFAQNIGVVALTGVYSRYVIAG 327 (451)
T ss_pred cCccCcccccceeeccHHHHHHHhcCC--CCCCchhhceeeeeeccCChhHHHHH
Confidence 999999999999999999999987655 677777777775 566666554443
No 45
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=72.63 E-value=40 Score=30.40 Aligned_cols=96 Identities=13% Similarity=0.105 Sum_probs=61.9
Q ss_pred CcEEEEEecCceEEechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHHHHHHHHHHHHcCC--EE
Q 006373 511 PGVLILHIDAPIYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGL--KL 588 (648)
Q Consensus 511 ~~v~ivrl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi--~l 588 (648)
.|..++..... .+.+++-+...+ .+.+.+++ +..|.+-.+.+.++.++++++|. ..
T Consensus 29 ~GfeVi~lg~~---~s~e~~v~aa~e--------------~~adii~i-----Ssl~~~~~~~~~~~~~~L~~~g~~~i~ 86 (132)
T TIGR00640 29 LGFDVDVGPLF---QTPEEIARQAVE--------------ADVHVVGV-----SSLAGGHLTLVPALRKELDKLGRPDIL 86 (132)
T ss_pred CCcEEEECCCC---CCHHHHHHHHHH--------------cCCCEEEE-----cCchhhhHHHHHHHHHHHHhcCCCCCE
Confidence 46666665543 455555444332 24566765 55667777889999999999853 23
Q ss_pred EEEc--CCHHHHHHHHhCCCccccCCcceecCHHHHHHHHHHhhh
Q 006373 589 LLAN--PRSEVIKKLNNSKFIENIGQEWIYLTVAEAVAACNFMLH 631 (648)
Q Consensus 589 ~l~~--~~~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~~~~l~ 631 (648)
++++ ..++-.+.|+..|+.+.++. -.+++|-+++..+.+.
T Consensus 87 vivGG~~~~~~~~~l~~~Gvd~~~~~---gt~~~~i~~~l~~~~~ 128 (132)
T TIGR00640 87 VVVGGVIPPQDFDELKEMGVAEIFGP---GTPIPESAIFLLKKLR 128 (132)
T ss_pred EEEeCCCChHhHHHHHHCCCCEEECC---CCCHHHHHHHHHHHHH
Confidence 4455 45556788999999887743 3467777777666543
No 46
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=70.05 E-value=20 Score=39.39 Aligned_cols=86 Identities=13% Similarity=0.093 Sum_probs=57.4
Q ss_pred hhhHhhhhhhhhhhhccCCCccccchhhHHHHHHHHhhhcccCCCCChhHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHh
Q 006373 103 LGLYSSFVPPLVYAMMGSSKDLAVGTVAVGSLLISSMLGKEVNPNENPKLYVQLALTATFFAGVFQASLGFL-RLGFVVD 181 (648)
Q Consensus 103 ~gl~~~~~~~li~~~~Gss~~~~~Gp~a~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Gi~~~llg~~-~lg~l~~ 181 (648)
-|+.+--+++++.+++|+++....+-......+ .+.. . -.+...+|++.+++|++ |++.+..
T Consensus 284 r~l~adGl~t~~agl~g~~p~tt~~en~g~i~~-----T~v~-------S-----R~v~~~a~~~lillgl~Pk~~al~~ 346 (429)
T TIGR03616 284 RAFVGDGLATMLSGSVGGTGVTTYAENIGVMAV-----TKVY-------S-----TLVFVAAAVFAILLGFSPKFGALIH 346 (429)
T ss_pred cchhhhhHHHHHHHhcCCCCCcceeeeeeeeee-----cCcc-------h-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888999999999998764443321111000 0000 0 02344567788888887 5889999
Q ss_pred hchHhHHHHHHhhhHHHHHHhhhh
Q 006373 182 FLSHATIVGFMGGAATVVCLQQLK 205 (648)
Q Consensus 182 ~lp~~Vi~Gf~~gigl~i~~~ql~ 205 (648)
.+|.||++|.+...--.+..++++
T Consensus 347 ~IP~pVlgG~~i~~fg~i~~~Gi~ 370 (429)
T TIGR03616 347 TIPVAVLGGASIVVFGLIAVAGAR 370 (429)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999887666666766666
No 47
>PRK09928 choline transport protein BetT; Provisional
Probab=70.03 E-value=2.2e+02 Score=33.15 Aligned_cols=29 Identities=24% Similarity=0.276 Sum_probs=26.0
Q ss_pred CccchHHHHHHHHHHHHHHHcCCEEEEEc
Q 006373 564 GSIDTSGISMFEEIKKVVDRRGLKLLLAN 592 (648)
Q Consensus 564 ~~IDssgl~~L~~l~~~~~~~gi~l~l~~ 592 (648)
.++|.++.-+++|+.+|++++|.+.-+..
T Consensus 547 ~f~~~~~~pA~~~v~~el~~~g~~~~~~~ 575 (679)
T PRK09928 547 RMLDTVCRPAMEEVAQELRLRGAYVELNE 575 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 58899999999999999999999988763
No 48
>COG5439 Uncharacterized conserved protein [Function unknown]
Probab=68.30 E-value=9.3 Score=31.75 Aligned_cols=43 Identities=9% Similarity=0.328 Sum_probs=37.4
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHHc-CCEEEEEcCC
Q 006373 552 GLQYVILDMSSVGSIDTSGISMFEEIKKVVDRR-GLKLLLANPR 594 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~-gi~l~l~~~~ 594 (648)
++...++|+.+..++.|||+..|.++.-+.+++ ++++++-|.+
T Consensus 45 ~ps~mtinL~gL~FLNSSGInlLakftievRk~pd~~fvvrGs~ 88 (112)
T COG5439 45 DPSEMTINLEGLEFLNSSGINLLAKFTIEVRKKPDTSFVVRGSK 88 (112)
T ss_pred ChHHhEEecccceeecccchHHHHhhhhhhhcCCCceEEEecCC
Confidence 466799999999999999999999999888877 7888887654
No 49
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=67.70 E-value=21 Score=32.47 Aligned_cols=74 Identities=14% Similarity=0.063 Sum_probs=49.9
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHHc---CCEEEEEcCC-------HHHHHHHHhCCCccccCCcceecCHHH
Q 006373 552 GLQYVILDMSSVGSIDTSGISMFEEIKKVVDRR---GLKLLLANPR-------SEVIKKLNNSKFIENIGQEWIYLTVAE 621 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~---gi~l~l~~~~-------~~v~~~l~~~g~~~~~~~~~if~s~~~ 621 (648)
+++.|.+-+..- +....+.++.+++++. ++.+++-|.- +..++.+++.|+...++.. .+.++
T Consensus 54 ~~d~V~lS~~~~-----~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~---~~~~~ 125 (137)
T PRK02261 54 DADAILVSSLYG-----HGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPG---TDPEE 125 (137)
T ss_pred CCCEEEEcCccc-----cCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcC---CCHHH
Confidence 577887765544 3445556666777666 6777777753 4577899999975443322 17899
Q ss_pred HHHHHHHhhhcC
Q 006373 622 AVAACNFMLHTC 633 (648)
Q Consensus 622 Av~~~~~~l~~~ 633 (648)
.+.+.++.+..+
T Consensus 126 i~~~l~~~~~~~ 137 (137)
T PRK02261 126 AIDDLKKDLNQR 137 (137)
T ss_pred HHHHHHHHhccC
Confidence 999998877653
No 50
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=66.78 E-value=24 Score=30.11 Aligned_cols=69 Identities=17% Similarity=0.216 Sum_probs=54.3
Q ss_pred EEEEecCceEEechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHHHHHHHHHH---HHcCCEEEE
Q 006373 514 LILHIDAPIYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEIKKVV---DRRGLKLLL 590 (648)
Q Consensus 514 ~ivrl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~L~~l~~~~---~~~gi~l~l 590 (648)
.++++.|.=+=-|+..|-+.+.++++..-+ .+.+.+.+++ .+.|+++|...+|.++.+.+ .++|.++.+
T Consensus 10 g~l~i~GeSypEn~~~Fy~Pi~~wl~~Yl~-------~~~~~i~~~~-~L~YfNTSSsk~l~~i~~~Le~~~~~g~~V~v 81 (99)
T PF09345_consen 10 GRLEISGESYPENAFAFYQPILDWLEAYLA-------EPNKPITFNF-KLSYFNTSSSKALMDIFDLLEDAAQKGGKVTV 81 (99)
T ss_pred CEEEEecccCccCHHHHHHHHHHHHHHHHh-------CCCCcEEEEE-EEEEEecHhHHHHHHHHHHHHHHHhcCCcEEE
Confidence 468888888888999999999999886532 2456788888 58899999999988888777 556777654
No 51
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=65.78 E-value=84 Score=36.22 Aligned_cols=77 Identities=8% Similarity=0.132 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHhCCC
Q 006373 527 ASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANPRSEVIKKLNNSKF 606 (648)
Q Consensus 527 a~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~~~~v~~~l~~~g~ 606 (648)
..++-+.+.+.++++ +.+++++|-.. +..+++++.|.+++.-+..+ .+.|+++|+
T Consensus 408 ~Gr~G~~va~~L~~~----------g~~vvvID~d~-------------~~v~~~~~~g~~v~~GDat~--~~~L~~agi 462 (601)
T PRK03659 408 FGRFGQVIGRLLMAN----------KMRITVLERDI-------------SAVNLMRKYGYKVYYGDATQ--LELLRAAGA 462 (601)
T ss_pred CchHHHHHHHHHHhC----------CCCEEEEECCH-------------HHHHHHHhCCCeEEEeeCCC--HHHHHhcCC
Confidence 344555565555432 46889999653 33445666788888876543 357888887
Q ss_pred ccccCCcceecCHHHHHHHHHH
Q 006373 607 IENIGQEWIYLTVAEAVAACNF 628 (648)
Q Consensus 607 ~~~~~~~~if~s~~~Av~~~~~ 628 (648)
.+------..++.++.+..++.
T Consensus 463 ~~A~~vv~~~~d~~~n~~i~~~ 484 (601)
T PRK03659 463 EKAEAIVITCNEPEDTMKIVEL 484 (601)
T ss_pred ccCCEEEEEeCCHHHHHHHHHH
Confidence 5421111234555555555443
No 52
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=65.52 E-value=13 Score=38.14 Aligned_cols=74 Identities=19% Similarity=0.120 Sum_probs=54.5
Q ss_pred ceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcC-----CHHHHHHHHhCCCccccCCcceecCHHHHHHHHH
Q 006373 553 LQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANP-----RSEVIKKLNNSKFIENIGQEWIYLTVAEAVAACN 627 (648)
Q Consensus 553 ~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~-----~~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~~ 627 (648)
.+.+++|+.++-+-+...+.-..+..++++++|++++++.- ..+..+.|++.|+... .++++.+..-+.++.+
T Consensus 2 ~~~~~~D~DGtl~~~~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~--~~~i~ts~~~~~~~l~ 79 (279)
T TIGR01452 2 AQGFIFDCDGVLWLGERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGL--AEQLFSSALCAARLLR 79 (279)
T ss_pred ccEEEEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCC--hhhEecHHHHHHHHHH
Confidence 57899999998877666665667888888999999988743 2345578899998533 4678887666666655
Q ss_pred H
Q 006373 628 F 628 (648)
Q Consensus 628 ~ 628 (648)
+
T Consensus 80 ~ 80 (279)
T TIGR01452 80 Q 80 (279)
T ss_pred h
Confidence 4
No 53
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=64.86 E-value=9.4 Score=41.36 Aligned_cols=55 Identities=11% Similarity=0.050 Sum_probs=29.6
Q ss_pred chHHHHHhhhhhhhhhcCCcccccccchhhHhhhcCCCchhHHHHHHHHHHHHHH
Q 006373 351 NKEMVAFGMMNIAGSCTSCYLTAGPFSRSAVNFNAGCKTAVSNIVMATAVMITLL 405 (648)
Q Consensus 351 n~el~a~GiaNi~~slfg~~p~~~s~srs~~~~~~G~~t~la~i~~a~i~ll~~l 405 (648)
++++..-=.++-+++.+++.-.+.......-|...=+-||..+-.++..-.+.+.
T Consensus 266 ~~~~~r~l~~dg~~~~l~gl~G~~~~t~~~en~g~i~~t~v~Sr~~~~~a~~~~i 320 (389)
T PF00860_consen 266 PPRIRRGLLADGLGTILAGLFGTSPTTTYSENAGGIAATGVASRRVGLTAGVILI 320 (389)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHT---EEE-HHHHHHHHHHTB--HHHHHHHHHHHH
T ss_pred chhhcccceeeeeeeeechhhcCCCCccccccchhhhhhccccceeeeHHHHHHH
Confidence 5667777788888888888877744444433333223455555555555444443
No 54
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=63.62 E-value=70 Score=34.59 Aligned_cols=104 Identities=13% Similarity=0.059 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccCcccCCc-------hHHHHHhhhhhhhhhcCCcccccccchhhHhhh---cC
Q 006373 317 TAVKTGVIIGVIALAEGIAVGRSFAMFKNYHIDGN-------KEMVAFGMMNIAGSCTSCYLTAGPFSRSAVNFN---AG 386 (648)
Q Consensus 317 ~~~~~~~~~aiv~~~~~~~~~~~~~~~~~~~~~~n-------~el~a~GiaNi~~slfg~~p~~~s~srs~~~~~---~G 386 (648)
+.+..+++..++++..+.++.-.-++.-| .++. --.++.|+++++=|+.-=+|.....|--+...- .+
T Consensus 22 s~~~aG~va~lvg~~~~~~iv~~a~~~~g--~s~aq~~swl~a~~~~~Gl~ti~lS~~~r~Pi~~awStPGaAll~~~~~ 99 (395)
T TIGR00843 22 PTLIAGFLAVLIGYAGPAAIFFQAAIKAG--ASTAMIIGWITAIGIAAAVSGIFLSIRFKTPVLTAWSAPGAALLVTGFP 99 (395)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecCchHHHHHHHhcC
Confidence 34455666677777766655443333322 2222 256778888888888888999888873222222 22
Q ss_pred CCchh-----HHHHHHHHHHHHHHH--hhhhhhhchhHHHHHHH
Q 006373 387 CKTAV-----SNIVMATAVMITLLF--LTPLFHYTPLVVLSSII 423 (648)
Q Consensus 387 ~~t~l-----a~i~~a~i~ll~~l~--l~~ll~~iP~~vLa~il 423 (648)
+ -.+ +.++++++++++.+. +..+.+.||.++.++++
T Consensus 100 ~-~~~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amL 142 (395)
T TIGR00843 100 G-ISLNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAML 142 (395)
T ss_pred C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 1 223 445555555555443 77788999999999987
No 55
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=63.44 E-value=1e+02 Score=26.98 Aligned_cols=100 Identities=14% Similarity=0.136 Sum_probs=67.2
Q ss_pred CcEEEEEecCc-eEEechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCC--ccchHHHHHHHHHHHHHHHcCCE
Q 006373 511 PGVLILHIDAP-IYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVG--SIDTSGISMFEEIKKVVDRRGLK 587 (648)
Q Consensus 511 ~~v~ivrl~g~-L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~--~IDssgl~~L~~l~~~~~~~gi~ 587 (648)
+++++..+.+. .--.+.+...+-+..+.+ .....+++|-+.++ +.|.+. +.--++.+.+.+.+++
T Consensus 4 ~~~~v~~~~s~~~~i~~~qdalDLi~~~~~-----------~~~~~i~l~~~~l~~dFF~L~T-glAGeiLQKf~NY~ik 71 (113)
T PF13788_consen 4 NGIRVAEVSSDEPLISDEQDALDLIGTAYE-----------HGADRIILPKEALSEDFFDLRT-GLAGEILQKFVNYRIK 71 (113)
T ss_pred CCeEEEEEeCCCCeecchhHHHHHHHHHHH-----------cCCCEEEEEhHHCCHHHHHhhc-chHHHHHHHHHhhcee
Confidence 35556665433 334555555554443311 35789999988875 456554 5667888999999999
Q ss_pred EEEEc------CCHHHHHHHHhCCCccccCCcceecCHHHHHHH
Q 006373 588 LLLAN------PRSEVIKKLNNSKFIENIGQEWIYLTVAEAVAA 625 (648)
Q Consensus 588 l~l~~------~~~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~ 625 (648)
+.++| .+...++....++=-..+ ++++|.+||+++
T Consensus 72 lAivGD~s~~~~S~~l~dfi~EsN~G~~~---~F~~~~~eA~~~ 112 (113)
T PF13788_consen 72 LAIVGDFSAYATSKSLRDFIYESNRGNHF---FFVPDEEEAIAW 112 (113)
T ss_pred EEEEEcccccccchhHHHHHHHhcCCCeE---EEECCHHHHHhh
Confidence 99983 355677777777654444 788999999886
No 56
>PRK10444 UMP phosphatase; Provisional
Probab=62.12 E-value=17 Score=36.77 Aligned_cols=73 Identities=15% Similarity=0.180 Sum_probs=53.7
Q ss_pred eEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcCC-----HHHHHHHHhCCCccccCCcceecCHHHHHHHHHH
Q 006373 554 QYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANPR-----SEVIKKLNNSKFIENIGQEWIYLTVAEAVAACNF 628 (648)
Q Consensus 554 ~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~~-----~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~~~ 628 (648)
+.+++|+.++-+-+-.-..--.+..+.++++|++++++.-+ .+..+.|++.|+. +.+++++.+..-+.++.++
T Consensus 2 ~~v~~DlDGtL~~~~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~--~~~~~i~ts~~~~~~~L~~ 79 (248)
T PRK10444 2 KNVICDIDGVLMHDNVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVD--VPDSVFYTSAMATADFLRR 79 (248)
T ss_pred cEEEEeCCCceEeCCeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC--CCHhhEecHHHHHHHHHHh
Confidence 57899999988777665666668888999999999887432 3478888889983 3456777776665555544
No 57
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=61.12 E-value=22 Score=36.52 Aligned_cols=78 Identities=15% Similarity=0.175 Sum_probs=63.8
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcC-----CHHHHHHHHhCCCccccCCcceecCHHHHHHHH
Q 006373 552 GLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANP-----RSEVIKKLNNSKFIENIGQEWIYLTVAEAVAAC 626 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~-----~~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~ 626 (648)
...++++||.+|-..-...+..-.+..+.+++.|.++.|+.- .++-.+++++.|+.. ++++++|.+...+-.+.
T Consensus 21 ~~DtfifDcDGVlW~g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~-v~e~~i~ssa~~~a~yl 99 (306)
T KOG2882|consen 21 SFDTFIFDCDGVLWLGEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNS-VKEENIFSSAYAIADYL 99 (306)
T ss_pred hcCEEEEcCCcceeecCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccc-cCcccccChHHHHHHHH
Confidence 478999999999988888888888899999999999988743 244667888999854 78889999988888777
Q ss_pred HHhh
Q 006373 627 NFML 630 (648)
Q Consensus 627 ~~~l 630 (648)
++..
T Consensus 100 k~~~ 103 (306)
T KOG2882|consen 100 KKRK 103 (306)
T ss_pred HHhC
Confidence 6655
No 58
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=60.17 E-value=2.7e+02 Score=31.74 Aligned_cols=64 Identities=11% Similarity=0.196 Sum_probs=37.5
Q ss_pred cCceEEechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH
Q 006373 519 DAPIYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANPRSEVI 598 (648)
Q Consensus 519 ~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~~~~v~ 598 (648)
++..--.-..++-+++.+.++++ +.+++++|-+. +..+++++.|.+.+..+..+ .
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~----------g~~vvvId~d~-------------~~~~~~~~~g~~~i~GD~~~--~ 471 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAA----------GIPLVVIETSR-------------TRVDELRERGIRAVLGNAAN--E 471 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHC----------CCCEEEEECCH-------------HHHHHHHHCCCeEEEcCCCC--H
Confidence 34433334444555555555433 46788888652 23455566788887776543 4
Q ss_pred HHHHhCCCc
Q 006373 599 KKLNNSKFI 607 (648)
Q Consensus 599 ~~l~~~g~~ 607 (648)
+.|+++|+.
T Consensus 472 ~~L~~a~i~ 480 (558)
T PRK10669 472 EIMQLAHLD 480 (558)
T ss_pred HHHHhcCcc
Confidence 567777774
No 59
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=59.49 E-value=25 Score=36.30 Aligned_cols=60 Identities=18% Similarity=0.252 Sum_probs=48.7
Q ss_pred CCceEEEEEecCCCccchHHH----HHHHHHHHHHHHcCCEEEEEc--CCHHHHHHHHhCCCcccc
Q 006373 551 TGLQYVILDMSSVGSIDTSGI----SMFEEIKKVVDRRGLKLLLAN--PRSEVIKKLNNSKFIENI 610 (648)
Q Consensus 551 ~~~~~vILD~s~v~~IDssgl----~~L~~l~~~~~~~gi~l~l~~--~~~~v~~~l~~~g~~~~~ 610 (648)
+..+.+++|+.+.-.=|..-+ ....+..++++++|+.+.++. .++.+.+.|++.|+.+.+
T Consensus 124 ~~~kvIvFDLDgTLi~~~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YF 189 (301)
T TIGR01684 124 EPPHVVVFDLDSTLITDEEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYF 189 (301)
T ss_pred ccceEEEEecCCCCcCCCCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCccc
Confidence 468899999988766665433 577889999999999999985 567788999999998655
No 60
>PLN02645 phosphoglycolate phosphatase
Probab=59.05 E-value=38 Score=35.43 Aligned_cols=69 Identities=19% Similarity=0.169 Sum_probs=50.0
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcCC-----HHHHHHHHhCCCccccCCcceecCHHHH
Q 006373 552 GLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANPR-----SEVIKKLNNSKFIENIGQEWIYLTVAEA 622 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~~-----~~v~~~l~~~g~~~~~~~~~if~s~~~A 622 (648)
+.+.+++|+.++-+-+..-+..-.+..++++++|++++++.-+ .+..+.|++.|+. ...+.++.+...+
T Consensus 27 ~~~~~~~D~DGtl~~~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~--~~~~~I~ts~~~~ 100 (311)
T PLN02645 27 SVETFIFDCDGVIWKGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLN--VTEEEIFSSSFAA 100 (311)
T ss_pred hCCEEEEeCcCCeEeCCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCC--CChhhEeehHHHH
Confidence 3689999999988876665565678888899999999887432 4466788889974 2345666664433
No 61
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=56.56 E-value=23 Score=35.96 Aligned_cols=74 Identities=18% Similarity=0.243 Sum_probs=53.3
Q ss_pred ceEEEEEecCCCccchH----HHHHHHHHHHHHHHcCCEEEEEcC---C--HHHHHHHHhCCCccccCCcceecCHHHHH
Q 006373 553 LQYVILDMSSVGSIDTS----GISMFEEIKKVVDRRGLKLLLANP---R--SEVIKKLNNSKFIENIGQEWIYLTVAEAV 623 (648)
Q Consensus 553 ~~~vILD~s~v~~IDss----gl~~L~~l~~~~~~~gi~l~l~~~---~--~~v~~~l~~~g~~~~~~~~~if~s~~~Av 623 (648)
++.+++|+.++-+-+.. .+..-.+..++++++|++++++.- . +++.+.|+..|+. +.+++++.+-..+.
T Consensus 1 ~k~i~~D~DGtl~~~~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~--~~~~~i~ts~~~~~ 78 (257)
T TIGR01458 1 VKGVLLDISGVLYISDAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFD--ISEDEVFTPAPAAR 78 (257)
T ss_pred CCEEEEeCCCeEEeCCCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCC--CCHHHeEcHHHHHH
Confidence 36789999888765544 445556667778899999988752 2 3588889999984 45678888877666
Q ss_pred HHHHH
Q 006373 624 AACNF 628 (648)
Q Consensus 624 ~~~~~ 628 (648)
++.++
T Consensus 79 ~~l~~ 83 (257)
T TIGR01458 79 QLLEE 83 (257)
T ss_pred HHHHh
Confidence 66654
No 62
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=56.12 E-value=46 Score=29.41 Aligned_cols=68 Identities=12% Similarity=0.145 Sum_probs=47.9
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHHc---CCEEEEEc-CCHHHHHHHHhCCCccccCCcceecCHHHHHHHHH
Q 006373 552 GLQYVILDMSSVGSIDTSGISMFEEIKKVVDRR---GLKLLLAN-PRSEVIKKLNNSKFIENIGQEWIYLTVAEAVAACN 627 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~---gi~l~l~~-~~~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~~ 627 (648)
+++.|.+-++ |..-.+.+.++.+.++++ ++.+++.+ ..++..+.++..|+.+.++ -=.+.++.+...+
T Consensus 50 ~~d~V~iS~~-----~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~---~~~~~~~~~~~~~ 121 (122)
T cd02071 50 DVDVIGLSSL-----SGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAEIFG---PGTSIEEIIDKIR 121 (122)
T ss_pred CCCEEEEccc-----chhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEEC---CCCCHHHHHHHHh
Confidence 5678887554 456667788888888887 55666664 3455688899999877763 4456777777654
No 63
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=55.65 E-value=24 Score=35.51 Aligned_cols=73 Identities=12% Similarity=0.114 Sum_probs=51.3
Q ss_pred eEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEc-----CCHHHHHHHHhCCCccccCCcceecCHHHHHHHHHH
Q 006373 554 QYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLAN-----PRSEVIKKLNNSKFIENIGQEWIYLTVAEAVAACNF 628 (648)
Q Consensus 554 ~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~-----~~~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~~~ 628 (648)
+.+++|+.++-+-+..-+..=.+..++++++|++++++. ..+.+.+.+++.|+. ...++++.+-..+.++..+
T Consensus 2 ~~~~~D~DGtl~~~~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~--~~~~~iit~~~~~~~~l~~ 79 (249)
T TIGR01457 2 KGYLIDLDGTMYKGKERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIP--ATLETVFTASMATADYMND 79 (249)
T ss_pred CEEEEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC--CChhhEeeHHHHHHHHHHh
Confidence 568888888766555444444677788889999999884 245678889999984 2456677776666665544
No 64
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=55.40 E-value=44 Score=37.05 Aligned_cols=76 Identities=14% Similarity=0.170 Sum_probs=59.3
Q ss_pred CCceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHhCCCccccCCcceecCHHHHHHHHHH
Q 006373 551 TGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANPRSEVIKKLNNSKFIENIGQEWIYLTVAEAVAACNF 628 (648)
Q Consensus 551 ~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~~~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~~~ 628 (648)
.+++.||||=- -..+|..|-++|.+...+.|++|+.++++.-++.+....++-=+.+ -|.-+.|-..||-+++...
T Consensus 489 G~P~lvVLDEP-NsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~-~G~~~~FG~r~eVLa~~~~ 564 (580)
T COG4618 489 GDPFLVVLDEP-NSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQ-DGRIAAFGPREEVLAKVLR 564 (580)
T ss_pred CCCcEEEecCC-CCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeec-CChHHhcCCHHHHHHHhcC
Confidence 46899999954 5779999999999999999999999999988888776555433322 2345778888888877654
No 65
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=52.02 E-value=43 Score=32.77 Aligned_cols=75 Identities=21% Similarity=0.333 Sum_probs=46.3
Q ss_pred EEechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEE-EcCC-H-HHHH
Q 006373 523 YFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLL-ANPR-S-EVIK 599 (648)
Q Consensus 523 ~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l-~~~~-~-~v~~ 599 (648)
.|.|.+++.+.+.+ .++..+++|...+..=|..|++.++++.+... +.++++ ++.. + .+.+
T Consensus 22 ~~~~~~~~l~~~~~--------------~~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p--~~~iIvlt~~~~~~~~~~ 85 (207)
T PRK11475 22 TFSSQSSFQDAMSR--------------ISFSAVIFSLSAMRSERREGLSCLTELAIKFP--RMRRLVIADDDIEARLIG 85 (207)
T ss_pred EeCCHHHHHHHhcc--------------CCCCEEEeeccccCCCCCCHHHHHHHHHHHCC--CCCEEEEeCCCCHHHHHH
Confidence 46677666665432 24578888887765556668888888876543 455544 3323 3 2455
Q ss_pred HHHhCCCccccCCc
Q 006373 600 KLNNSKFIENIGQE 613 (648)
Q Consensus 600 ~l~~~g~~~~~~~~ 613 (648)
.+.+.|....+.++
T Consensus 86 ~~~~~Ga~gyl~K~ 99 (207)
T PRK11475 86 SLSPSPLDGVLSKA 99 (207)
T ss_pred HHHHcCCeEEEecC
Confidence 66567877766543
No 66
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=50.00 E-value=63 Score=35.52 Aligned_cols=74 Identities=15% Similarity=0.220 Sum_probs=44.2
Q ss_pred hhhHhhhhhhhhhhhccCCCccccchhhHHHHHHHHhhhcccCCCCChhHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHh
Q 006373 103 LGLYSSFVPPLVYAMMGSSKDLAVGTVAVGSLLISSMLGKEVNPNENPKLYVQLALTATFFAGVFQASLGFL-RLGFVVD 181 (648)
Q Consensus 103 ~gl~~~~~~~li~~~~Gss~~~~~Gp~a~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Gi~~~llg~~-~lg~l~~ 181 (648)
-|+..--+++++.++||+..-...-...+-.+ .+.+.+ .. . +.=++|.+++++|++ |+|-+..
T Consensus 309 Rgi~~eGig~lL~gl~G~gtG~Tt~~ENigll----~vTKVg---SR--r-------vvQ~aa~fmI~~~i~gKFgA~fA 372 (510)
T KOG1292|consen 309 RGIGWEGIGSLLAGLFGTGTGSTTSVENIGLL----GVTKVG---SR--R-------VVQIAAGFMIFFGIFGKFGAFFA 372 (510)
T ss_pred hhhhhhhHHHHHHHhhCCCccceeeccceeeE----eeeeee---ee--e-------ehhhhHHHHHHHHHHHHHHHHHH
Confidence 36666779999999999754332221111000 011111 00 0 122347778888877 5899999
Q ss_pred hchHhHHHHHH
Q 006373 182 FLSHATIVGFM 192 (648)
Q Consensus 182 ~lp~~Vi~Gf~ 192 (648)
-+|+|+++|..
T Consensus 373 sIP~piv~~l~ 383 (510)
T KOG1292|consen 373 SIPDPIVGGLL 383 (510)
T ss_pred cCcHHHHHHHH
Confidence 99999999944
No 67
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=48.99 E-value=64 Score=32.20 Aligned_cols=74 Identities=15% Similarity=0.000 Sum_probs=51.5
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEE-cCC-HH--HHHHHHhCCCcc-ccCCcceecCHHHHHHHH
Q 006373 552 GLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLA-NPR-SE--VIKKLNNSKFIE-NIGQEWIYLTVAEAVAAC 626 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~-~~~-~~--v~~~l~~~g~~~-~~~~~~if~s~~~Av~~~ 626 (648)
+.+.+++|+.++-+-.......-.++.++++++|+++.++ |.. +. ..+.|++.|+.. .+ +.++.+-+.+.+..
T Consensus 7 ~~~~~~~D~dG~l~~~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~--~~Ii~s~~~~~~~l 84 (242)
T TIGR01459 7 DYDVFLLDLWGVIIDGNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLP--EMIISSGEIAVQMI 84 (242)
T ss_pred cCCEEEEecccccccCCccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCcccc--ceEEccHHHHHHHH
Confidence 4789999999887766555667788889999999999886 322 22 237889999864 33 35666655444444
Q ss_pred H
Q 006373 627 N 627 (648)
Q Consensus 627 ~ 627 (648)
+
T Consensus 85 ~ 85 (242)
T TIGR01459 85 L 85 (242)
T ss_pred H
Confidence 3
No 68
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=48.94 E-value=1.5e+02 Score=30.02 Aligned_cols=154 Identities=8% Similarity=-0.028 Sum_probs=100.5
Q ss_pred hhhcccccchhhccchhHHHHHHHHHHHHhc-cccCCCeEEeecCCC-CCCCCCCCcCCCChhhHHHHHHHHHHHHHHHH
Q 006373 253 YFSKKKATFFWINAMAPLTSVILGSVLVYFT-DAERHGVQVIGQLKK-GLNPPSLSELDFGSPYLMTAVKTGVIIGVIAL 330 (648)
Q Consensus 253 ~~~~~~~~~~~~p~~~~Li~vvi~t~i~~~~-~~~~~~~~~~g~ip~-g~p~p~~p~~~~~~~~~~~~~~~~~~~aiv~~ 330 (648)
++.+++.+...-+....+++.++......-. +.+..+- ....+|. .+|.... +++.-...+..++.++++..+.+.
T Consensus 88 ~~~~~~~~~~p~~li~vv~~~~~~~~~~~~~~~v~~~~~-i~~~lp~~~~p~~~~-~~~~~~~~~~~a~~ia~v~~~~s~ 165 (280)
T PF00916_consen 88 RLPSRFWPPIPAPLIVVVLGTLLSWLFLLDKYGVAIVGE-IPSGLPPPSLPSFDI-SWSLILDLLPTALAIAIVGFIESL 165 (280)
T ss_pred hccccccccccccceeeehhhhhhhhhhhcccccccccc-ccccCccccCccccc-ccccccccchhHHHHHHHHHHHHH
Confidence 3334443333334445555555554444322 1111111 1122444 3552122 233334567788888888888888
Q ss_pred HHHHHHHhhhhcccCcccCCchHHHHHhhhhhhhhhcCCcccccccchhhHhhhcCCCchhHHHHHHHHHHHHHHHhh
Q 006373 331 AEGIAVGRSFAMFKNYHIDGNKEMVAFGMMNIAGSCTSCYLTAGPFSRSAVNFNAGCKTAVSNIVMATAVMITLLFLT 408 (648)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~n~el~a~GiaNi~~slfg~~p~~~s~srs~~~~~~G~~t~la~i~~a~i~ll~~l~l~ 408 (648)
...-+.++....+.+.+.+.-..=.+.=++.+++|+-++-..+-+..+-....++..-+-.++++..++++...-++.
T Consensus 166 ~~~~~~~~~~~~~~d~n~El~a~G~aNi~s~~~gg~p~~~s~srs~~~~~~Ga~t~~s~~~~~~~~l~~l~~~~~~l~ 243 (280)
T PF00916_consen 166 LIAKSIAKKTGYRIDPNQELIALGLANIVSGLFGGMPGSGSFSRSAVNYRAGARTRLSGLISALFVLLVLLFLAPLLA 243 (280)
T ss_pred HhhhhhcccccccCCcHHHHHHhhhccccchhhcccccccccccchHHHhcCcceeehhHHHHHHHHHHHHHHHHHHH
Confidence 888888777777777777777777888899999999998888889999999999999888888888877776655533
No 69
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=48.07 E-value=81 Score=30.69 Aligned_cols=65 Identities=12% Similarity=0.121 Sum_probs=46.5
Q ss_pred EEEEEecCceE---EechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEE
Q 006373 513 VLILHIDAPIY---FANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKL 588 (648)
Q Consensus 513 v~ivrl~g~L~---F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l 588 (648)
+.+++++|.+. -...+++.+.+.++.+ .++++.|+++... ..-|....+.+.+..+.+++.+..+
T Consensus 2 v~vi~i~g~i~~~~~~~~~~l~~~l~~a~~----------d~~i~~ivl~~~s-~Gg~~~~~~~i~~~i~~~~~~~kpv 69 (208)
T cd07023 2 IAVIDIEGTISDGGGIGADSLIEQLRKARE----------DDSVKAVVLRINS-PGGSVVASEEIYREIRRLRKAKKPV 69 (208)
T ss_pred EEEEEEEEEEcCCCCCCHHHHHHHHHHHHh----------CCCCcEEEEEEEC-CCCCHHHHHHHHHHHHHHHhcCCcE
Confidence 57889999987 5677777777766432 2468999998865 5568777777777777777655544
No 70
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=47.66 E-value=52 Score=29.84 Aligned_cols=61 Identities=18% Similarity=0.176 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHHHcCC--EEEEEcCC-----HH---HHHHHHhCCCccccCCcceecCHHHHHHHHHHhhh
Q 006373 568 TSGISMFEEIKKVVDRRGL--KLLLANPR-----SE---VIKKLNNSKFIENIGQEWIYLTVAEAVAACNFMLH 631 (648)
Q Consensus 568 ssgl~~L~~l~~~~~~~gi--~l~l~~~~-----~~---v~~~l~~~g~~~~~~~~~if~s~~~Av~~~~~~l~ 631 (648)
.+....+.++.++++++|. ..++++-. ++ +++.|++.|+...++... +.++.+++.++.|+
T Consensus 63 ~~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt---~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 63 GHGEIDCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGT---PPEVVIADLKKDLN 133 (134)
T ss_pred ccCHHHHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCC---CHHHHHHHHHHHhc
Confidence 4566678888888888864 33455542 22 456799999854443321 78999999888764
No 71
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=47.43 E-value=69 Score=31.34 Aligned_cols=67 Identities=7% Similarity=0.100 Sum_probs=42.7
Q ss_pred EEEEEecCceEEech-------HHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHHHHHHHHHHHHcC
Q 006373 513 VLILHIDAPIYFANA-------SYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRG 585 (648)
Q Consensus 513 v~ivrl~g~L~F~na-------~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~g 585 (648)
|.++.++|++.-.+. +++.+.+++..+ .++++.|||+... ..-|....+.+.+..+.+++.+
T Consensus 2 i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~----------d~~v~~ivL~~~s-~Gg~~~~~~~~~~~l~~~~~~~ 70 (211)
T cd07019 2 IGVVFANGAIVDGEETQGNVGGDTTAAQIRDARL----------DPKVKAIVLRVNS-PGGSVTASEVIRAELAAARAAG 70 (211)
T ss_pred EEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhh----------CCCceEEEEEEcC-CCcCHHHHHHHHHHHHHHHhCC
Confidence 556677777654432 344444444222 3578999998664 6678888877777777777766
Q ss_pred CEEEE
Q 006373 586 LKLLL 590 (648)
Q Consensus 586 i~l~l 590 (648)
..++-
T Consensus 71 kpVia 75 (211)
T cd07019 71 KPVVV 75 (211)
T ss_pred CCEEE
Confidence 55533
No 72
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=47.22 E-value=1.4e+02 Score=35.05 Aligned_cols=77 Identities=9% Similarity=0.039 Sum_probs=53.9
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHHcCC---EEEEEcC-CHHHHHHHHhCCCccccCCcceecCHHHHHHHHH
Q 006373 552 GLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGL---KLLLANP-RSEVIKKLNNSKFIENIGQEWIYLTVAEAVAACN 627 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi---~l~l~~~-~~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~~ 627 (648)
+.+.++| +..|.+-.+...++.+.++++|. .+++.|. .++-.+.++..|++..+ +.=.+..+.++...
T Consensus 633 ~a~ivvl-----cs~d~~~~e~~~~l~~~Lk~~G~~~v~vl~GG~~~~~~~~~l~~aGvD~~i---~~g~d~~~~L~~l~ 704 (714)
T PRK09426 633 DVHVVGV-----SSLAAGHKTLVPALIEALKKLGREDIMVVVGGVIPPQDYDFLYEAGVAAIF---GPGTVIADAAIDLL 704 (714)
T ss_pred CCCEEEE-----eccchhhHHHHHHHHHHHHhcCCCCcEEEEeCCCChhhHHHHHhCCCCEEE---CCCCCHHHHHHHHH
Confidence 4566776 44566666778889999999874 4555543 34445789999997776 34457888888888
Q ss_pred HhhhcCCCC
Q 006373 628 FMLHTCKSN 636 (648)
Q Consensus 628 ~~l~~~~~~ 636 (648)
+.+..+.+.
T Consensus 705 ~~l~~~~~~ 713 (714)
T PRK09426 705 ELLSARLGY 713 (714)
T ss_pred HHHHHhccC
Confidence 888766543
No 73
>PHA00736 hypothetical protein
Probab=46.37 E-value=80 Score=24.38 Aligned_cols=68 Identities=24% Similarity=0.366 Sum_probs=43.8
Q ss_pred HHHHHHHhCCCcchhhHh-hhhhhhhhhhccCCCccccchhhHHHHHHHHhhhcccCCCCChhHHHHHHHHHHHHHHHH
Q 006373 90 GISYANLANLPPILGLYS-SFVPPLVYAMMGSSKDLAVGTVAVGSLLISSMLGKEVNPNENPKLYVQLALTATFFAGVF 167 (648)
Q Consensus 90 ~~aya~laglpp~~gl~~-~~~~~li~~~~Gss~~~~~Gp~a~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Gi~ 167 (648)
+++.|+-.|+.|+.+..- ...-++-|-.-|.-|.+..|-.+.++++.-..+- .+|.+.....+++|.+
T Consensus 4 aislal~tglgpvi~viiil~mmgltykmagkipaii~giastf~lmfmdflp----------lfwgi~vifgliag~v 72 (79)
T PHA00736 4 AISLALQTGLGPVIAIIIILAMMGLTYKMAGKIPAILVGIASTFTLMFMDFLP----------LFWGITVIFGLIAGLV 72 (79)
T ss_pred HHHHHHHcCCccHHHHHHHHHHHhhHHHHhCCccHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHh
Confidence 566677779999877543 2345667777788888888887777776644432 2355555555555543
No 74
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=44.19 E-value=83 Score=32.06 Aligned_cols=29 Identities=7% Similarity=0.101 Sum_probs=22.6
Q ss_pred HHhhhhhhHHhhchHhHHHHHHhhhHHHH
Q 006373 171 LGFLRLGFVVDFLSHATIVGFMGGAATVV 199 (648)
Q Consensus 171 lg~~~lg~l~~~lp~~Vi~Gf~~gigl~i 199 (648)
+|---...+.+.+|+.++.|+..+-|+.=
T Consensus 161 ~G~~~v~~il~~iP~~v~~Gl~vaggmLP 189 (265)
T TIGR00822 161 VSQSAVQAMLKAIPEVVTHGLQIAGGIIV 189 (265)
T ss_pred cCHHHHHHHHHHCHHHHHHHHHHHHhhHH
Confidence 34434678899999999999988887763
No 75
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=44.18 E-value=3.3e+02 Score=31.58 Aligned_cols=42 Identities=14% Similarity=0.362 Sum_probs=28.0
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHhCCCcc
Q 006373 552 GLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANPRSEVIKKLNNSKFIE 608 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~~~~v~~~l~~~g~~~ 608 (648)
..+++++|.+. +-.+++++.|.+++.-...+ .+.|++.|+.+
T Consensus 423 g~~vvvID~d~-------------~~v~~~~~~g~~v~~GDat~--~~~L~~agi~~ 464 (621)
T PRK03562 423 GVKMTVLDHDP-------------DHIETLRKFGMKVFYGDATR--MDLLESAGAAK 464 (621)
T ss_pred CCCEEEEECCH-------------HHHHHHHhcCCeEEEEeCCC--HHHHHhcCCCc
Confidence 46788998874 33455566788887776543 34677788754
No 76
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=42.60 E-value=3e+02 Score=29.53 Aligned_cols=105 Identities=13% Similarity=0.151 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccCcccCCch-------HHHHHhhhhhhhhhcCCcccccccchhhHhhhcCC--
Q 006373 317 TAVKTGVIIGVIALAEGIAVGRSFAMFKNYHIDGNK-------EMVAFGMMNIAGSCTSCYLTAGPFSRSAVNFNAGC-- 387 (648)
Q Consensus 317 ~~~~~~~~~aiv~~~~~~~~~~~~~~~~~~~~~~n~-------el~a~GiaNi~~slfg~~p~~~s~srs~~~~~~G~-- 387 (648)
+.+..+++.+++++..+.++.-..++.-| .+.+| -.++.|+.++.-|+--=+|.....|--+.....+.
T Consensus 6 s~~~aG~va~lvg~tg~~aiv~qaa~a~g--~s~~q~~SWl~al~~~~Gl~~i~lSl~yR~Pi~~AWStPGaAlL~~~~~ 83 (378)
T PF03594_consen 6 SAVSAGFVAVLVGYTGPVAIVLQAAQAAG--ASPAQIASWLFALYLGMGLTSILLSLRYRMPIVTAWSTPGAALLATSLP 83 (378)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcchHHHHHHHHhcc
Confidence 34444556667777666555443333222 22222 23556778888888888899888877666554333
Q ss_pred CchhH-----HHHHHHHHHHHHHH--hhhhhhhchhHHHHHHH
Q 006373 388 KTAVS-----NIVMATAVMITLLF--LTPLFHYTPLVVLSSII 423 (648)
Q Consensus 388 ~t~la-----~i~~a~i~ll~~l~--l~~ll~~iP~~vLa~il 423 (648)
.-.+. -++++++++++.+. +..+.++||.++..+++
T Consensus 84 ~~~~~eavGAfl~~~~Li~l~G~tg~~~rl~~~IP~~ia~AML 126 (378)
T PF03594_consen 84 GYSFAEAVGAFLVAGALILLLGVTGLFGRLMRRIPPPIASAML 126 (378)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 22333 34455555555554 77889999998665543
No 77
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=41.83 E-value=1.1e+02 Score=29.69 Aligned_cols=58 Identities=16% Similarity=0.188 Sum_probs=41.0
Q ss_pred EEEEEecCceEEechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHHHHHHHHHHH
Q 006373 513 VLILHIDAPIYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEIKKVVD 582 (648)
Q Consensus 513 v~ivrl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~ 582 (648)
|.+++++|.+. .+.+++.+.+++..+ .++++.|+|+... ..-|....+.+.+..++++
T Consensus 2 v~vi~i~g~i~-~s~~~l~~~l~~a~~----------d~~i~~vvl~~~s-~Gg~~~~~~~l~~~i~~~~ 59 (207)
T TIGR00706 2 IAILPVSGAIA-VSPEDFDKKIKRIKD----------DKSIKALLLRINS-PGGTVVASEEIYEKLKKLK 59 (207)
T ss_pred EEEEEEEEEEe-cCHHHHHHHHHHHhh----------CCCccEEEEEecC-CCCCHHHHHHHHHHHHHhc
Confidence 67899999998 677777777766432 2468899998864 4457777666666666665
No 78
>COG0573 PstC ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]
Probab=41.09 E-value=4.4e+02 Score=27.52 Aligned_cols=60 Identities=30% Similarity=0.480 Sum_probs=38.8
Q ss_pred ccccCC-----CCChhh-hhhhhhhHHHHHHhhhhhHHHHHH-HhC-CCcc--------hhhHhhhhhhhhhhhcc
Q 006373 60 ILEWAP-----RYTFEF-FKSDLLAGITIASLAVPQGISYAN-LAN-LPPI--------LGLYSSFVPPLVYAMMG 119 (648)
Q Consensus 60 ~~~wl~-----~y~~~~-l~~Di~aGltv~~~~iPq~~aya~-lag-lpp~--------~gl~~~~~~~li~~~~G 119 (648)
-.+|=| +|..-. +.+-++.-+..-++++|.+++.|. ++- .||. .-=..+.+|+++|++||
T Consensus 63 ~~~W~p~~~~~~~G~l~~i~GTli~s~iA~liAvP~gi~~Aifl~E~~~p~~~r~~l~~~iElLAgIPSVVYG~fg 138 (310)
T COG0573 63 GTEWNPTNAQPQYGALPPIAGTLITSLIALLIAVPVGIGTAIFLSEYAPPRRLRRVLKPAIELLAGIPSVVYGFFG 138 (310)
T ss_pred cCccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCcHHHHHHHHHHHHHHhcCChhHHHHHH
Confidence 345766 344332 567777777777899999999986 343 4552 11223567778887776
No 79
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=40.97 E-value=96 Score=30.35 Aligned_cols=52 Identities=19% Similarity=0.384 Sum_probs=44.9
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHhCCC
Q 006373 552 GLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANPRSEVIKKLNNSKF 606 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~~~~v~~~l~~~g~ 606 (648)
.++++.|| .....+|.-++.-.+++.+.++++|+-++++ ..+|++.|..+.-
T Consensus 157 ~P~fiLLD-EPFAGVDPiaV~dIq~iI~~L~~rgiGvLIT--DHNVREtL~i~dR 208 (243)
T COG1137 157 NPKFILLD-EPFAGVDPIAVIDIQRIIKHLKDRGIGVLIT--DHNVRETLDICDR 208 (243)
T ss_pred CCCEEEec-CCccCCCchhHHHHHHHHHHHHhCCceEEEc--cccHHHHHhhhhe
Confidence 57899999 5688899999999999999999999999998 5567888876653
No 80
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=40.82 E-value=54 Score=30.30 Aligned_cols=57 Identities=11% Similarity=0.085 Sum_probs=40.0
Q ss_pred EEEecCceEEechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHHHHHHHHHHH
Q 006373 515 ILHIDAPIYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEIKKVVD 582 (648)
Q Consensus 515 ivrl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~ 582 (648)
+++++|++.-...+++.+.++++-++ ++.+.|+|+...- .-|.+....+.+..++++
T Consensus 1 vi~i~g~I~~~~~~~l~~~l~~a~~d----------~~~~~ivl~~~s~-Gg~~~~~~~i~~~l~~~~ 57 (161)
T cd00394 1 VIFINGVIEDVSADQLAAQIRFAEAD----------NSVKAIVLEVNTP-GGRVDAGMNIVDALQASR 57 (161)
T ss_pred CEEEEeEEccchHHHHHHHHHHHHhC----------CCCceEEEEEECC-CcCHHHHHHHHHHHHHhC
Confidence 47889999988888888888775322 3578899988643 336666666666555554
No 81
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=40.42 E-value=60 Score=33.20 Aligned_cols=78 Identities=13% Similarity=0.047 Sum_probs=60.0
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcC----CHH-HHHHHHhCCCccccCCcceecCHHHHHHHH
Q 006373 552 GLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANP----RSE-VIKKLNNSKFIENIGQEWIYLTVAEAVAAC 626 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~----~~~-v~~~l~~~g~~~~~~~~~if~s~~~Av~~~ 626 (648)
+.+.+++|+.+|-+-+...+..=.+..+.++++|++++|..- +++ +.++|+..+..+. ..++++.|-+-+.++.
T Consensus 7 ~y~~~l~DlDGvl~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~-~~~~i~TS~~at~~~l 85 (269)
T COG0647 7 KYDGFLFDLDGVLYRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDV-TPDDIVTSGDATADYL 85 (269)
T ss_pred hcCEEEEcCcCceEeCCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCC-CHHHeecHHHHHHHHH
Confidence 357899999999999999999999999999999999988643 233 7778887555443 3467888877666666
Q ss_pred HHhh
Q 006373 627 NFML 630 (648)
Q Consensus 627 ~~~l 630 (648)
.++.
T Consensus 86 ~~~~ 89 (269)
T COG0647 86 AKQK 89 (269)
T ss_pred HhhC
Confidence 5544
No 82
>PF14188 DUF4311: Domain of unknown function (DUF4311)
Probab=39.78 E-value=39 Score=31.47 Aligned_cols=22 Identities=23% Similarity=0.533 Sum_probs=14.2
Q ss_pred hhhhhhhHHHHHHh-----hhhhHHHH
Q 006373 72 FKSDLLAGITIASL-----AVPQGISY 93 (648)
Q Consensus 72 l~~Di~aGltv~~~-----~iPq~~ay 93 (648)
+.+-+++-++|+.+ ++|+++..
T Consensus 88 iagaiiG~ivV~~lN~ta~aiP~slq~ 114 (213)
T PF14188_consen 88 IAGAIIGAIVVAFLNSTAAAIPESLQV 114 (213)
T ss_pred HHHhHHHHHHHHHHHhHHHhhhHHHHH
Confidence 45566666666654 68888765
No 83
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=39.66 E-value=89 Score=27.79 Aligned_cols=49 Identities=18% Similarity=0.201 Sum_probs=39.7
Q ss_pred HHHHHHHcCCEEEEEc-CCHHHHHHHHhCCCccccCCcceecCHHHHHHHHHH
Q 006373 577 IKKVVDRRGLKLLLAN-PRSEVIKKLNNSKFIENIGQEWIYLTVAEAVAACNF 628 (648)
Q Consensus 577 l~~~~~~~gi~l~l~~-~~~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~~~ 628 (648)
+.+.+.++|+.+++|+ ..+.....|+..|+.-...+. .+++||++....
T Consensus 57 ~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~---~~V~e~i~~~~~ 106 (121)
T COG1433 57 IAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG---GTVEEAIKAFLE 106 (121)
T ss_pred HHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC---CCHHHHHHHHhc
Confidence 6778889999999985 588899999999985554432 889999988755
No 84
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=39.63 E-value=7.3e+02 Score=29.64 Aligned_cols=28 Identities=18% Similarity=0.380 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHhhhhhhHH--hhchHhHH
Q 006373 160 ATFFAGVFQASLGFLRLGFVV--DFLSHATI 188 (648)
Q Consensus 160 ~~~l~Gi~~~llg~~~lg~l~--~~lp~~Vi 188 (648)
...+.|.+.++++++- .++. .++|.+++
T Consensus 14 ~~~~lG~~lll~~l~s-~~lkeRl~Ls~~~v 43 (810)
T TIGR00844 14 AYSCVGIFSSIFSLVS-LFVKEKLYIGESMV 43 (810)
T ss_pred HHHHHHHHHHHHHHHH-HHHHhhcCCcHHHH
Confidence 3455688888888763 3443 36666654
No 85
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=39.15 E-value=1e+02 Score=30.18 Aligned_cols=35 Identities=14% Similarity=0.305 Sum_probs=24.8
Q ss_pred CCceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCE
Q 006373 551 TGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLK 587 (648)
Q Consensus 551 ~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~ 587 (648)
++++.|+||.... .-|....+.+.+..+++++ +..
T Consensus 41 ~~i~~Vvl~~~s~-gg~~~~~~~l~~~l~~~~~-~Kp 75 (214)
T cd07022 41 PDVRAIVLDIDSP-GGEVAGVFELADAIRAARA-GKP 75 (214)
T ss_pred CCCcEEEEEEeCC-CCcHHHHHHHHHHHHHHhc-CCC
Confidence 5689999998664 4577777777777777765 443
No 86
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=38.89 E-value=78 Score=32.78 Aligned_cols=60 Identities=18% Similarity=0.257 Sum_probs=44.6
Q ss_pred CCceEEEEEecCCCccchHHH----HHHHHHHHHHHHcCCEEEEEc--CCHHHHHHHHhCCCcccc
Q 006373 551 TGLQYVILDMSSVGSIDTSGI----SMFEEIKKVVDRRGLKLLLAN--PRSEVIKKLNNSKFIENI 610 (648)
Q Consensus 551 ~~~~~vILD~s~v~~IDssgl----~~L~~l~~~~~~~gi~l~l~~--~~~~v~~~l~~~g~~~~~ 610 (648)
+..+.+++|+.+.-.-|-.-+ ....+..++++++|+.+.++. ..+.+.+.++..|+.+.+
T Consensus 126 ~~~~~i~~D~D~TL~~~~~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~yF 191 (303)
T PHA03398 126 EIPHVIVFDLDSTLITDEEPVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEGYF 191 (303)
T ss_pred eeccEEEEecCCCccCCCCccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCccc
Confidence 457889999987544443222 446677888899999999884 568899999999997654
No 87
>COG1296 AzlC Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]
Probab=38.87 E-value=51 Score=32.99 Aligned_cols=47 Identities=26% Similarity=0.316 Sum_probs=32.4
Q ss_pred hhhhhhhhhHHHHHHhhhhhHHHHHHHhCCCcchhhHhhhhhhhhhh
Q 006373 70 EFFKSDLLAGITIASLAVPQGISYANLANLPPILGLYSSFVPPLVYA 116 (648)
Q Consensus 70 ~~l~~Di~aGltv~~~~iPq~~aya~laglpp~~gl~~~~~~~li~~ 116 (648)
+++++.+.+++-+.+-.+|.+++|+.++.-.-..-+++...+.++|+
T Consensus 10 ~~f~~G~~~~~Pi~lg~ip~Gl~fG~~a~~~G~s~~e~~lmS~~iyA 56 (238)
T COG1296 10 AEFRQGLKASLPILLGYLPIGLAFGLLAVALGFSPLEAILMSLLIYA 56 (238)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 34666666666677888999999998863333334556667777776
No 88
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=38.33 E-value=81 Score=26.36 Aligned_cols=70 Identities=11% Similarity=0.262 Sum_probs=46.2
Q ss_pred EEechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEc--CCHHHHHH
Q 006373 523 YFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLAN--PRSEVIKK 600 (648)
Q Consensus 523 ~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~--~~~~v~~~ 600 (648)
.+.|.++..+.+.+ .++..+++|...- |.++.+.++++.+.. .++.+++.. ..+.....
T Consensus 28 ~~~~~~~~~~~~~~--------------~~~d~iiid~~~~---~~~~~~~~~~i~~~~--~~~~ii~~t~~~~~~~~~~ 88 (112)
T PF00072_consen 28 TASSGEEALELLKK--------------HPPDLIIIDLELP---DGDGLELLEQIRQIN--PSIPIIVVTDEDDSDEVQE 88 (112)
T ss_dssp EESSHHHHHHHHHH--------------STESEEEEESSSS---SSBHHHHHHHHHHHT--TTSEEEEEESSTSHHHHHH
T ss_pred EECCHHHHHHHhcc--------------cCceEEEEEeeec---ccccccccccccccc--ccccEEEecCCCCHHHHHH
Confidence 45666666655543 3588999996533 356777888886555 667776665 34556666
Q ss_pred HHhCCCccccC
Q 006373 601 LNNSKFIENIG 611 (648)
Q Consensus 601 l~~~g~~~~~~ 611 (648)
..+.|..+.+.
T Consensus 89 ~~~~g~~~~l~ 99 (112)
T PF00072_consen 89 ALRAGADDYLS 99 (112)
T ss_dssp HHHTTESEEEE
T ss_pred HHHCCCCEEEE
Confidence 77899887764
No 89
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=38.14 E-value=1e+02 Score=30.86 Aligned_cols=78 Identities=14% Similarity=0.139 Sum_probs=51.8
Q ss_pred ecCceEEechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHH-----H--------------------
Q 006373 518 IDAPIYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGI-----S-------------------- 572 (648)
Q Consensus 518 l~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl-----~-------------------- 572 (648)
-+.++.+.+.+++++.+.. .++-.|++|+.+. -+|++.. +
T Consensus 42 ~~~~~~~~~~~~~~~~~~~--------------~~p~aViFDlDgT-LlDSs~~~~~G~~~~s~~~~~~l~g~~~w~~~~ 106 (237)
T TIGR01672 42 EQAPIHWISVAQIENSLEG--------------RPPIAVSFDIDDT-VLFSSPGFWRGKKTFSPGSEDYLKNQVFWEKVN 106 (237)
T ss_pred ccCCeeEEEHHHHHHhcCC--------------CCCeEEEEeCCCc-cccCcHHHhCCcccCCHHHhhhhcChHHHHHHH
Confidence 4567888998888776643 2345899998764 4555541 0
Q ss_pred -----------HHHHHHHHHHHcCCEEEEEcCC------HHHHHHHHhCCCcccc
Q 006373 573 -----------MFEEIKKVVDRRGLKLLLANPR------SEVIKKLNNSKFIENI 610 (648)
Q Consensus 573 -----------~L~~l~~~~~~~gi~l~l~~~~------~~v~~~l~~~g~~~~~ 610 (648)
...++.++++++|+++.++.-+ ..+...++..|+.+.+
T Consensus 107 ~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f 161 (237)
T TIGR01672 107 NGWDEFSIPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAMN 161 (237)
T ss_pred HhcccCCcchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchhe
Confidence 0456778889999999887543 2355566668886543
No 90
>PF03609 EII-Sor: PTS system sorbose-specific iic component; InterPro: IPR004700 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=35.45 E-value=2.5e+02 Score=28.08 Aligned_cols=29 Identities=7% Similarity=0.091 Sum_probs=21.8
Q ss_pred HHHhhhhhhHHhhchHhHHHHHHhhhHHH
Q 006373 170 SLGFLRLGFVVDFLSHATIVGFMGGAATV 198 (648)
Q Consensus 170 llg~~~lg~l~~~lp~~Vi~Gf~~gigl~ 198 (648)
.+|---...+.+.+|+.+..|+..+.|+.
T Consensus 161 ~~G~~~v~~~~~~iP~~v~~gl~vagg~L 189 (238)
T PF03609_consen 161 YFGSDAVQALLNAIPEWVLNGLNVAGGML 189 (238)
T ss_pred hcCHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33433357889999999999988877765
No 91
>COG4129 Predicted membrane protein [Function unknown]
Probab=33.92 E-value=1e+02 Score=32.64 Aligned_cols=52 Identities=15% Similarity=0.177 Sum_probs=33.2
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHhhhhhhhchhHHHHHHHHHHHhhccCHHHHHHHhc
Q 006373 384 NAGCKTAVSNIVMATAVMITLLFLTPLFHYTPLVVLSSIIIAAMLGLIDYEAVIHLWK 441 (648)
Q Consensus 384 ~~G~~t~la~i~~a~i~ll~~l~l~~ll~~iP~~vLa~ili~~~~~li~~~~~~~l~~ 441 (648)
+.|.||=-+++.+++.++++- ++ -.|.++.|++.-+....--..+.++..|+
T Consensus 8 ~ig~RtlKt~ia~~La~~ia~-~l-----~~~~~~~A~i~AV~~l~~t~~~s~~~~~~ 59 (332)
T COG4129 8 KIGARTLKTGLAAGLALLIAH-LL-----GLPQPAFAGISAVLCLSPTIKRSLKRALQ 59 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-Hh-----CCCchHHHHHHHhhcccCcchHHHHHHHH
Confidence 357777777877777776666 32 36778888877665554444455555543
No 92
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=33.63 E-value=1.8e+02 Score=29.77 Aligned_cols=119 Identities=8% Similarity=0.072 Sum_probs=82.8
Q ss_pred EEEEecCceEEechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHHHHHH--HHHHHHcCCEEEEE
Q 006373 514 LILHIDAPIYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEI--KKVVDRRGLKLLLA 591 (648)
Q Consensus 514 ~ivrl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~L~~l--~~~~~~~gi~l~l~ 591 (648)
.+....+-|.=.+.+.+.++++++-++ ...++.+|++|-..=..|+--+.+.++++ -++-++.|+-++++
T Consensus 35 ~V~D~t~~Ls~~e~~~Leq~l~~L~~k--------t~~QiaVv~vpSt~g~~IE~ya~rlfd~W~lG~k~~~dGvLLlVa 106 (271)
T COG1512 35 RVTDLTGTLSAAERGALEQQLADLEQK--------TGAQIAVVTVPSTGGETIEQYATRLFDKWKLGDKAQDDGVLLLVA 106 (271)
T ss_pred eeeeccccCChhhHHHHHHHHHHHHhc--------cCCeEEEEEecCCCCCCHHHHHHHHHHhcCCCccccCCCEEEEEE
Confidence 567777788878877888887775332 23567888888888777777777888773 33344445555444
Q ss_pred cCCH-----------------HHHHHHHhCCCccccCCcceecCHHHHHHHHHHhhhcCCCCCcccc
Q 006373 592 NPRS-----------------EVIKKLNNSKFIENIGQEWIYLTVAEAVAACNFMLHTCKSNPEVEY 641 (648)
Q Consensus 592 ~~~~-----------------~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~~~~l~~~~~~~~~~~ 641 (648)
.++ .....+-+.-+...+.+.+.+.-++++++...+.++.+..+.....
T Consensus 107 -~~dr~~rIevGyGLEg~ltD~~a~~iIr~~i~P~fr~gny~~gi~~~id~l~~~l~g~~~~~~~~~ 172 (271)
T COG1512 107 -MNDRRVRIEVGYGLEGVLTDAQAGRIIRETIAPAFRDGNYAGGLEAGIDRLVALLAGEPLPSPARA 172 (271)
T ss_pred -cCCCeEEEEEecCcccccChHHHHHHHHhhhCcccccCcHHHHHHHHHHHHHHHHcCCCCCCcccc
Confidence 333 2445555566667777778888999999999999998887775543
No 93
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=33.56 E-value=1.7e+02 Score=26.10 Aligned_cols=53 Identities=19% Similarity=0.107 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHhCCCccccCCcceecCHHHHHHHHHH
Q 006373 568 TSGISMFEEIKKVVDRR--GLKLLLANPRSEVIKKLNNSKFIENIGQEWIYLTVAEAVAACNF 628 (648)
Q Consensus 568 ssgl~~L~~l~~~~~~~--gi~l~l~~~~~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~~~ 628 (648)
-.+.+.+..+.++++++ +..+..+=.+..+++++++.|+ -.++++||++.+.+
T Consensus 13 ~~~~~~~~~i~~~l~~~~p~~~V~~afts~~i~~~l~~~~~--------~~p~~~eaL~~l~~ 67 (127)
T cd03412 13 PTAEKTIDAIEDKVRAAFPDYEVRWAFTSRMIRKKLKKRGI--------EVDTPEEALAKLAA 67 (127)
T ss_pred HHHHHHHHHHHHHHHHHCCCCeEEEEecHHHHHHHHHhcCC--------CCCCHHHHHHHHHH
Confidence 36777888888888775 4566666667777777777653 34666777766654
No 94
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=33.48 E-value=2.8e+02 Score=24.00 Aligned_cols=65 Identities=12% Similarity=0.132 Sum_probs=41.3
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHHc---CCEEEEEcCCHHH-HHHHHhCCCccccCCcceecCHHHHHHHHH
Q 006373 552 GLQYVILDMSSVGSIDTSGISMFEEIKKVVDRR---GLKLLLANPRSEV-IKKLNNSKFIENIGQEWIYLTVAEAVAACN 627 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~---gi~l~l~~~~~~v-~~~l~~~g~~~~~~~~~if~s~~~Av~~~~ 627 (648)
+++.|.+-++.-.. ...+.++.++++++ ++.+++.|..... .+.++..|+ |.++.+-.+|++.+.
T Consensus 50 ~pdvV~iS~~~~~~-----~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~~~~~~~G~------D~~~~~~~~~~~~~~ 118 (119)
T cd02067 50 DADAIGLSGLLTTH-----MTLMKEVIEELKEAGLDDIPVLVGGAIVTRDFKFLKEIGV------DAYFGPATEAVEVLK 118 (119)
T ss_pred CCCEEEEecccccc-----HHHHHHHHHHHHHcCCCCCeEEEECCCCChhHHHHHHcCC------eEEECCHHHHHHHHh
Confidence 57788886663333 35556666666665 5777787764432 346777776 356777778887764
No 95
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=32.98 E-value=79 Score=33.12 Aligned_cols=59 Identities=20% Similarity=0.314 Sum_probs=40.7
Q ss_pred CceEEEEEecCCC-----------ccchHH-HHHHHHHHHHHHHcCCEEEEEcCC--HHHHHHHHh----CCCcccc
Q 006373 552 GLQYVILDMSSVG-----------SIDTSG-ISMFEEIKKVVDRRGLKLLLANPR--SEVIKKLNN----SKFIENI 610 (648)
Q Consensus 552 ~~~~vILD~s~v~-----------~IDssg-l~~L~~l~~~~~~~gi~l~l~~~~--~~v~~~l~~----~g~~~~~ 610 (648)
..|++|+|+.+.- .|.... -..+.++.++++++|+.+.+|.-+ +.+.+.|++ .++.+.+
T Consensus 2 ~~k~~v~DlDnTlw~gv~~e~g~~~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~~~f 78 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGVLGEDGIDNLNLSPLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQAEDF 78 (320)
T ss_pred CeEEEEEcCCCCCCCCEEccCCccccccCccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcHHHe
Confidence 4689999997522 222221 246788899999999999998554 457778887 6665443
No 96
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=32.78 E-value=47 Score=33.19 Aligned_cols=82 Identities=22% Similarity=0.333 Sum_probs=56.8
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHHcCC-EEEEEcCCHH--HHHHHHhCCCccccCCcceecCHHHHHHHHHH
Q 006373 552 GLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGL-KLLLANPRSE--VIKKLNNSKFIENIGQEWIYLTVAEAVAACNF 628 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi-~l~l~~~~~~--v~~~l~~~g~~~~~~~~~if~s~~~Av~~~~~ 628 (648)
+++.|..+-+.-..|-+.| +.++.-|. ++++++++.. -...-..+|-.+.+.+.++|+|++||+..|.-
T Consensus 4 ~i~iVLVep~~~gNIG~vA--------RaMKNfGl~eL~LV~Pr~~~~eeA~a~A~gA~dile~A~i~~tL~eAl~d~~~ 75 (242)
T COG0565 4 NIRIVLVEPSHPGNIGSVA--------RAMKNFGLSELRLVNPRAGLDEEARALAAGARDILENAKIVDTLEEALADCDL 75 (242)
T ss_pred ccEEEEEcCCCCccHHHHH--------HHHHhCCcceEEEECCCCCCCHHHHHHhccchhhhccCeeecCHHHHhcCCCE
Confidence 3556666666555555544 55666665 7899988763 33344446666777788999999999999988
Q ss_pred hhhcCCCCCcccc
Q 006373 629 MLHTCKSNPEVEY 641 (648)
Q Consensus 629 ~l~~~~~~~~~~~ 641 (648)
..-++.+.|+...
T Consensus 76 v~aTtar~r~~~~ 88 (242)
T COG0565 76 VVATTARSRDLLR 88 (242)
T ss_pred EEEeccccCcccc
Confidence 7777777666544
No 97
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=32.60 E-value=1.4e+02 Score=30.40 Aligned_cols=27 Identities=11% Similarity=0.023 Sum_probs=20.9
Q ss_pred HhhhhhhHHhhchHhHHHHHHhhhHHH
Q 006373 172 GFLRLGFVVDFLSHATIVGFMGGAATV 198 (648)
Q Consensus 172 g~~~lg~l~~~lp~~Vi~Gf~~gigl~ 198 (648)
|---...+.+.+|+.++.|+..+-|+.
T Consensus 163 G~~~v~~~~~~iP~~v~~GL~vaggmL 189 (267)
T PRK09757 163 AQGAMQALVKAMPAWLTHGFEVAGGIL 189 (267)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 433467889999999999988777765
No 98
>PRK11778 putative inner membrane peptidase; Provisional
Probab=32.32 E-value=4.4e+02 Score=27.88 Aligned_cols=70 Identities=20% Similarity=0.298 Sum_probs=45.9
Q ss_pred CCcEEEEEecCceEEechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCcc-chHHHHHHHHHHHHHHHcCCEE
Q 006373 510 VPGVLILHIDAPIYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSI-DTSGISMFEEIKKVVDRRGLKL 588 (648)
Q Consensus 510 ~~~v~ivrl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~I-Dssgl~~L~~l~~~~~~~gi~l 588 (648)
.|.+.+++++|++.-.....+++.+...++..+ +.+.|+|+..+-... +.++. .....+++++.|+.+
T Consensus 89 ~~~v~VI~~~G~I~~~~~~~l~e~i~a~l~~A~---------~~~aVvLridSpGG~v~~s~~--a~~~l~~lr~~~kpV 157 (330)
T PRK11778 89 KPRLFVLDFKGDIDASEVESLREEITAILAVAK---------PGDEVLLRLESPGGVVHGYGL--AASQLQRLRDAGIPL 157 (330)
T ss_pred CCeEEEEEEEEEECCCcchhhHHHHHHHHHhcc---------CCCeEEEEEeCCCCchhHHHH--HHHHHHHHHhcCCCE
Confidence 467999999999988887788888877654331 126799998765553 33332 222244566677766
Q ss_pred EE
Q 006373 589 LL 590 (648)
Q Consensus 589 ~l 590 (648)
+.
T Consensus 158 va 159 (330)
T PRK11778 158 TV 159 (330)
T ss_pred EE
Confidence 55
No 99
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=31.39 E-value=3e+02 Score=31.79 Aligned_cols=101 Identities=14% Similarity=0.089 Sum_probs=58.4
Q ss_pred eEEechH-----HHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCC----CccchHHHHHHHHHHHHHHHcCCEEEEEc
Q 006373 522 IYFANAS-----YLRERISRWIYEEEEKLKISGETGLQYVILDMSSV----GSIDTSGISMFEEIKKVVDRRGLKLLLAN 592 (648)
Q Consensus 522 L~F~na~-----~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v----~~IDssgl~~L~~l~~~~~~~gi~l~l~~ 592 (648)
|||++-. .+++.++++.++. ....+...+|+- .|++.--.+--.++.+.+ +.|..+|+||
T Consensus 486 LffG~R~~~~D~lY~~El~~~~~~g----------~l~~l~~afSRd~~~k~YVQ~~l~e~~~~l~~~l-~~ga~~YVCG 554 (600)
T PRK10953 486 LFFGNPHFTEDFLYQVEWQRYVKEG----------LLTRIDLAWSRDQKEKIYVQDKLREQGAELWRWI-NDGAHIYVCG 554 (600)
T ss_pred EEeeccCCccchhHHHHHHHHHHcC----------CcceEEEEECCCCCCCCcHHHHHHHHHHHHHHHH-HCCcEEEEEC
Confidence 7787754 2455555544321 244566667643 366653333334555555 4689999998
Q ss_pred CC----HHHHHHHHhCCCccccCCcceecCHHHHHHHHHHhhhcCCCCCccc
Q 006373 593 PR----SEVIKKLNNSKFIENIGQEWIYLTVAEAVAACNFMLHTCKSNPEVE 640 (648)
Q Consensus 593 ~~----~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~~~~l~~~~~~~~~~ 640 (648)
.. .+|++.|.. +.... --.+.++|-++. +.+.+++++.++.
T Consensus 555 ~~~~M~~~V~~~L~~--i~~~~----g~~~~e~A~~~l-~~l~~~~RY~~Dv 599 (600)
T PRK10953 555 DANRMAKDVEQALLE--VIAEF----GGMDTEAADEFL-SELRVERRYQRDV 599 (600)
T ss_pred CCccchHHHHHHHHH--HHHHc----CCCCHHHHHHHH-HHHHHcCCeeeec
Confidence 74 456666653 22222 224678887777 5577777776554
No 100
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=30.76 E-value=4e+02 Score=29.44 Aligned_cols=93 Identities=11% Similarity=0.041 Sum_probs=50.0
Q ss_pred cCceEE---echHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEec--CCCccchHHHHHHHHHHHHHHHcCCEEEEEcC
Q 006373 519 DAPIYF---ANASYLRERISRWIYEEEEKLKISGETGLQYVILDMS--SVGSIDTSGISMFEEIKKVVDRRGLKLLLANP 593 (648)
Q Consensus 519 ~g~L~F---~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s--~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~ 593 (648)
..|++. .+-+.+.+.++...++ +++..+++-+. .....|. -.+.+.+..++. .+..++.+..
T Consensus 344 ~NPlDl~~~~~~~~~~~al~~l~~d----------p~vd~Vlv~~~~~~~~~~~~-~a~~l~~~~~~~--~~KPvv~~~~ 410 (447)
T TIGR02717 344 KNPVDVLGDATPERYAKALKTVAED----------ENVDGVVVVLTPTAMTDPEE-VAKGIIEGAKKS--NEKPVVAGFM 410 (447)
T ss_pred CCCEecCCCCCHHHHHHHHHHHHcC----------CCCCEEEEEccCCccCCHHH-HHHHHHHHHHhc--CCCcEEEEec
Confidence 455554 3345555555544332 34566654443 2222222 223444433332 1556644432
Q ss_pred ----CHHHHHHHHhCCCccccCCcceecCHHHHHHHHHHhhh
Q 006373 594 ----RSEVIKKLNNSKFIENIGQEWIYLTVAEAVAACNFMLH 631 (648)
Q Consensus 594 ----~~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~~~~l~ 631 (648)
.++.++.|++.|+ -.|.+.++|+++.....+
T Consensus 411 gg~~~~~~~~~L~~~Gi-------p~f~~p~~A~~al~~~~~ 445 (447)
T TIGR02717 411 GGKSVDPAKRILEENGI-------PNYTFPERAVKALSALYR 445 (447)
T ss_pred CCccHHHHHHHHHhCCC-------CccCCHHHHHHHHHHHHh
Confidence 2446777888776 489999999999876543
No 101
>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]
Probab=30.03 E-value=1e+02 Score=35.93 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHHH-hhhhhhhchhHHHHHHHHHHHhhccCHHHHHHH
Q 006373 391 VSNIVMATAVMITLLF-LTPLFHYTPLVVLSSIIIAAMLGLIDYEAVIHL 439 (648)
Q Consensus 391 la~i~~a~i~ll~~l~-l~~ll~~iP~~vLa~ili~~~~~li~~~~~~~l 439 (648)
..++++|++-+++.++ ++-+..|+|.+++.|.+.-+++..+ ...++.+
T Consensus 170 ~lt~l~Giiq~~mG~lrLGfl~~~lS~~~l~GFt~gaa~~I~-~sQlk~l 218 (665)
T KOG0236|consen 170 TLTFLTGIIQLILGLLRLGFLVRFLSEPALSGFTTGAALHIV-TSQLKVL 218 (665)
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHccHHHHhHhhhhhhhhhh-HHhhHhh
Confidence 3566778888888888 9999999999999998888777665 3334433
No 102
>PF07466 DUF1517: Protein of unknown function (DUF1517); InterPro: IPR010903 This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=29.82 E-value=4.2e+02 Score=27.40 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=24.4
Q ss_pred cCCcEEEEEecCceEEechHHHHHHHHHHHHH
Q 006373 509 SVPGVLILHIDAPIYFANASYLRERISRWIYE 540 (648)
Q Consensus 509 ~~~~v~ivrl~g~L~F~na~~~~~~l~~~i~~ 540 (648)
..+.+.|++++=.| ++.+..+++.++++.+.
T Consensus 100 ~~~~vsV~klQv~L-l~~a~~lQ~~L~~iA~~ 130 (289)
T PF07466_consen 100 SNPKVSVVKLQVGL-LASARSLQRDLNRIAET 130 (289)
T ss_pred cCCceEEEEeeehh-cccChHHHHHHHHHHHh
Confidence 34578999999877 47889999999886543
No 103
>PF04206 MtrE: Tetrahydromethanopterin S-methyltransferase, subunit E ; InterPro: IPR005780 This model describes N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit E in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0006814 sodium ion transport, 0005737 cytoplasm, 0012506 vesicle membrane
Probab=28.77 E-value=3.5e+02 Score=26.90 Aligned_cols=89 Identities=17% Similarity=0.280 Sum_probs=50.3
Q ss_pred HhCCCcchhhHhhhhhhhhhhhccCCCccccchhhHHHHHHHHhhhcccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhh
Q 006373 96 LANLPPILGLYSSFVPPLVYAMMGSSKDLAVGTVAVGSLLISSMLGKEVNPNENPKLYVQLALTATFFAGVFQASLGFLR 175 (648)
Q Consensus 96 laglpp~~gl~~~~~~~li~~~~Gss~~~~~Gp~a~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Gi~~~llg~~~ 175 (648)
++|=||.||++.+.-+.+.|+++. .++-..++++.+++.+..+. +.+...+-..|=+-- ...|+
T Consensus 51 iSGEP~aygl~~ai~g~iA~~lm~-----~~~~~~i~ai~~Ga~vAa~v----------~g~ya~taylGR~~s-~~~F~ 114 (269)
T PF04206_consen 51 ISGEPPAYGLWCAIAGAIAWALMS-----AFGLNPILAIAIGAAVAALV----------HGVYATTAYLGRIAS-QKRFG 114 (269)
T ss_pred ccCCCchhhHHHHHHHHHHHHHHH-----HcCccHHHHHHHHHHHHHHH----------HHHHHHHHHhhhHhh-HhhcC
Confidence 468899999999999999999872 22233556666666655432 222222222222111 11111
Q ss_pred ----hhhHHhhchHhHHHHHHhhhHHHHH
Q 006373 176 ----LGFVVDFLSHATIVGFMGGAATVVC 200 (648)
Q Consensus 176 ----lg~l~~~lp~~Vi~Gf~~gigl~i~ 200 (648)
+.-+..-+|+.+-.+|++.-++..+
T Consensus 115 QPvylDvl~~~~~~i~~haFIa~F~i~~~ 143 (269)
T PF04206_consen 115 QPVYLDVLRSHTPPIMAHAFIATFCIVTI 143 (269)
T ss_pred CCeehHHHhhhchhHHHHHHHHHHHHHHH
Confidence 2334556677777777776666544
No 104
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=28.43 E-value=6.8e+02 Score=27.62 Aligned_cols=78 Identities=19% Similarity=0.205 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhchhHHHHHHHHHHHhhccCHHHHHHHhccCccchhHHhhhhhhhhhccchhhHHHHHH
Q 006373 392 SNIVMATAVMITLLFLTPLFHYTPLVVLSSIIIAAMLGLIDYEAVIHLWKLDKFDFIVCMSAYVGVVFGSVEIGLVIAVT 471 (648)
Q Consensus 392 a~i~~a~i~ll~~l~l~~ll~~iP~~vLa~ili~~~~~li~~~~~~~l~~~~~~d~~i~~~t~~~~~~~~~~~Gl~~Gv~ 471 (648)
++++.++++.+.+++.+-+=+..|+..++.+.-....... +-.-...-.. .-.++.-.++..+..|++++++
T Consensus 136 ~saV~av~l~~~i~~~~~lRa~~p~~~~~~I~~~I~~~i~-------~t~g~~~p~~-~~~~l~~~ll~P~~ig~ai~~~ 207 (459)
T PF10337_consen 136 ASAVFAVFLFVFIYFHGWLRAKNPKLNFPVIFGSIFVDIF-------LTYGPLFPTF-FAYTLGKTLLKPFLIGIAIALV 207 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH-------HHhCcCcCcc-hHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777677777778887555443332222111 0000111111 2234445566677888888888
Q ss_pred HHHHHH
Q 006373 472 ISLLRV 477 (648)
Q Consensus 472 ~sl~~~ 477 (648)
++++.+
T Consensus 208 vslliF 213 (459)
T PF10337_consen 208 VSLLIF 213 (459)
T ss_pred Hheeec
Confidence 887765
No 105
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=27.53 E-value=1.7e+02 Score=22.37 Aligned_cols=17 Identities=29% Similarity=0.593 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHhcc
Q 006373 268 APLTSVILGSVLVYFTD 284 (648)
Q Consensus 268 ~~Li~vvi~t~i~~~~~ 284 (648)
..-|++++|-+++|+-|
T Consensus 41 GSAIAI~lGLvLAy~GG 57 (60)
T PF03818_consen 41 GSAIAIVLGLVLAYIGG 57 (60)
T ss_pred hHHHHHHHHHHHHHHcc
Confidence 67788888988888765
No 106
>PRK15065 PTS system mannose-specific transporter subunit IIC; Provisional
Probab=27.02 E-value=6.9e+02 Score=25.47 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=21.8
Q ss_pred HhhhhhhHHhhchHhHHHHHHhhhHHHH
Q 006373 172 GFLRLGFVVDFLSHATIVGFMGGAATVV 199 (648)
Q Consensus 172 g~~~lg~l~~~lp~~Vi~Gf~~gigl~i 199 (648)
|---...+.+.+|+.++.|+..+-|+.=
T Consensus 163 G~~~v~~~~~~iP~~v~~GL~vaggmLP 190 (262)
T PRK15065 163 GTSAVQSMLNAIPEVLTGGLNIGGGMIV 190 (262)
T ss_pred CHHHHHHHHHHCHHHHHHHHHHHHhhHH
Confidence 4434678899999999999888777653
No 107
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=26.75 E-value=1.2e+02 Score=26.81 Aligned_cols=77 Identities=12% Similarity=0.090 Sum_probs=44.2
Q ss_pred eEEEEEecCCCc-----cch----HHHHHHHHHHHHHHHcCCEEEEEcCCH----------HHHHHHHhCCCccccC--C
Q 006373 554 QYVILDMSSVGS-----IDT----SGISMFEEIKKVVDRRGLKLLLANPRS----------EVIKKLNNSKFIENIG--Q 612 (648)
Q Consensus 554 ~~vILD~s~v~~-----IDs----sgl~~L~~l~~~~~~~gi~l~l~~~~~----------~v~~~l~~~g~~~~~~--~ 612 (648)
|.+++|+.++-. .+. ....-..++.+.++++|+++.++.-++ .+.+.+++.|+..... .
T Consensus 1 k~~~~D~dgtL~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 80 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVPYVDDEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVPIDVLYAC 80 (132)
T ss_pred CEEEEeCCCceecCCCCCCCHHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCCEEEEEEC
Confidence 356777766443 211 222345668888899999999886543 4778888888742110 0
Q ss_pred cceecCHHHHHHHHHHhh
Q 006373 613 EWIYLTVAEAVAACNFML 630 (648)
Q Consensus 613 ~~if~s~~~Av~~~~~~l 630 (648)
......-.++++.+.+++
T Consensus 81 ~~~~KP~~~~~~~~~~~~ 98 (132)
T TIGR01662 81 PHCRKPKPGMFLEALKRF 98 (132)
T ss_pred CCCCCCChHHHHHHHHHc
Confidence 001122245666666655
No 108
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=26.68 E-value=2.8e+02 Score=28.15 Aligned_cols=43 Identities=14% Similarity=0.366 Sum_probs=38.4
Q ss_pred CCceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcCC
Q 006373 551 TGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANPR 594 (648)
Q Consensus 551 ~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~~ 594 (648)
.++..+||| ...+.+|.--.+.|++...+++++|.+++|++-.
T Consensus 147 HePeLlILD-EPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~ 189 (300)
T COG4152 147 HEPELLILD-EPFSGLDPVNVELLKDAIFELKEEGATIIFSSHR 189 (300)
T ss_pred cCCCEEEec-CCccCCChhhHHHHHHHHHHHHhcCCEEEEecch
Confidence 467899999 5688999999999999999999999999998654
No 109
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=26.61 E-value=1.5e+02 Score=28.85 Aligned_cols=57 Identities=19% Similarity=0.267 Sum_probs=47.7
Q ss_pred CceEEEEEecCCCcc-chHHHHHHHHHHHHHHHcCCEEEEEcC-CHHHHHHHHhCCCcc
Q 006373 552 GLQYVILDMSSVGSI-DTSGISMFEEIKKVVDRRGLKLLLANP-RSEVIKKLNNSKFIE 608 (648)
Q Consensus 552 ~~~~vILD~s~v~~I-Dssgl~~L~~l~~~~~~~gi~l~l~~~-~~~v~~~l~~~g~~~ 608 (648)
++..|-+|.+-+..+ |......+..+.+.+++.|++++..|+ +++..+.+++.|+.-
T Consensus 169 ~~~~ikld~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gVe~~~~~~~l~~~G~~~ 227 (236)
T PF00563_consen 169 PPDYIKLDGSLVRDLSDEEAQSLLQSLINLAKSLGIKVIAEGVESEEQLELLKELGVDY 227 (236)
T ss_dssp CGSEEEEEHHGHTTTTSHHHHHHHHHHHHHHHHTT-EEEEECE-SHHHHHHHHHTTESE
T ss_pred ccccceeecccccccchhhHHHHHHHHHHHhhccccccceeecCCHHHHHHHHHcCCCE
Confidence 477999999998877 666777888899999999999999998 577889999999753
No 110
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=26.21 E-value=1.4e+02 Score=30.28 Aligned_cols=43 Identities=16% Similarity=0.333 Sum_probs=38.1
Q ss_pred CCceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcCC
Q 006373 551 TGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANPR 594 (648)
Q Consensus 551 ~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~~ 594 (648)
.+++.++|| ...+.+|..+...+.++.+++++.|+.++++.-+
T Consensus 156 ~~p~lllLD-EP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHD 198 (254)
T COG1121 156 QNPDLLLLD-EPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHD 198 (254)
T ss_pred cCCCEEEec-CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 467889999 6799999999999999999999999999888554
No 111
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=26.10 E-value=1.4e+02 Score=28.22 Aligned_cols=58 Identities=16% Similarity=0.207 Sum_probs=44.9
Q ss_pred CCceEEEEEecC--CCccchHHHHHHHHHHHHHHHcCCEEEEEcCCH--HHHHHHHhCCCcc
Q 006373 551 TGLQYVILDMSS--VGSIDTSGISMFEEIKKVVDRRGLKLLLANPRS--EVIKKLNNSKFIE 608 (648)
Q Consensus 551 ~~~~~vILD~s~--v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~~~--~v~~~l~~~g~~~ 608 (648)
...+.+++|+.+ |..=+..+..-++++..++++.|+++++++-+. .+....++.|+.-
T Consensus 26 ~Gikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~f 87 (175)
T COG2179 26 HGIKGVILDLDNTLVPWDNPDATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPF 87 (175)
T ss_pred cCCcEEEEeccCceecccCCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCce
Confidence 468999999976 455566777899999999999999999886543 3556677777643
No 112
>TIGR01113 mtrE N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit E. coenzyme M methyltransferase subunit E in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=26.06 E-value=4.4e+02 Score=26.41 Aligned_cols=87 Identities=21% Similarity=0.315 Sum_probs=52.6
Q ss_pred HhCCCcchhhHhhhhhhhhhhhccCCCccccchhhHHHHHHHHhhhcccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhh
Q 006373 96 LANLPPILGLYSSFVPPLVYAMMGSSKDLAVGTVAVGSLLISSMLGKEVNPNENPKLYVQLALTATFFAGVFQASLGFLR 175 (648)
Q Consensus 96 laglpp~~gl~~~~~~~li~~~~Gss~~~~~Gp~a~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Gi~~~llg~~~ 175 (648)
++|=||.||++.++-+.+.|+++.. .+-..++++.+++.+..+. +.+...+--.|=+ .+..|
T Consensus 51 iSGEP~aygl~~~i~g~vA~~l~~~-----~~~~~ilAi~~Ga~vaa~v----------~~~ya~tay~GR~---asq~~ 112 (283)
T TIGR01113 51 ISGEPVSYGLYCGIAGAVAYVLMSY-----FGLPPLIALAVGAVIAALV----------HLAYATTAYLGRI---ASSAT 112 (283)
T ss_pred ccCCCchhHHHHHHHHHHHHHHHHh-----cCCchHHHHHHHHHHHHHH----------HHHHHHHHHHHHH---HhHHh
Confidence 4688999999999999999998721 2334566676776665542 3333333322322 11111
Q ss_pred ------hhhHHhhchHhHHHHHHhhhHHHHH
Q 006373 176 ------LGFVVDFLSHATIVGFMGGAATVVC 200 (648)
Q Consensus 176 ------lg~l~~~lp~~Vi~Gf~~gigl~i~ 200 (648)
+.-+..-+|+.+-.+|++..++..+
T Consensus 113 F~QPvylDvl~~~~~~i~~haFIa~fci~~~ 143 (283)
T TIGR01113 113 FNQPVYLDMLTSHLGPIAGHGFIVTFCMVGV 143 (283)
T ss_pred cCCcchHHHHHhhchhHHHHHHHHHHHHHHH
Confidence 3445566777777888777666544
No 113
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=25.76 E-value=1.3e+02 Score=29.91 Aligned_cols=71 Identities=11% Similarity=0.104 Sum_probs=44.3
Q ss_pred EEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEc-----CCHHHHHHHHh-CCCccccCCcceecCHHHHHHHHHH
Q 006373 556 VILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLAN-----PRSEVIKKLNN-SKFIENIGQEWIYLTVAEAVAACNF 628 (648)
Q Consensus 556 vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~-----~~~~v~~~l~~-~g~~~~~~~~~if~s~~~Av~~~~~ 628 (648)
+++|+.++-.-+...+..=.+..+.++++|+++.+.. ...+..+.|++ .|+. +..+.++.+...+.++.++
T Consensus 1 ~lfD~DGvL~~~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~--~~~~~iits~~~~~~~l~~ 77 (236)
T TIGR01460 1 FLFDIDGVLWLGHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVD--VSPDQIITSGSVTKDLLRQ 77 (236)
T ss_pred CEEeCcCccCcCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCC--CCHHHeeeHHHHHHHHHHH
Confidence 3566666655444433333566677788999998873 23456677877 6652 3455677776666666654
No 114
>TIGR02847 CyoD cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant.
Probab=25.68 E-value=4.1e+02 Score=22.56 Aligned_cols=55 Identities=20% Similarity=0.152 Sum_probs=38.1
Q ss_pred hhchHhHHHHHHhhhHHHHHHhhhhhhhCcccccCCCchHHHHHHHHhcCCCCchhhhHHHHHHHHHHHH
Q 006373 181 DFLSHATIVGFMGGAATVVCLQQLKGILGLVRFTHATDLQSVMRSVFSQTSQWRWESGVLGCCFLLFLLL 250 (648)
Q Consensus 181 ~~lp~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~l~~ 250 (648)
+.+|+.....++.+.|+.=+..|+..++-++..+ ++ .||..+++.+++.+++++.
T Consensus 28 ~~~~~~~~~~~i~~~A~iQi~vqL~~FlHl~~~~--~~-------------~~n~~~l~Ft~~i~~iiv~ 82 (96)
T TIGR02847 28 GTLSKGLTLVIIIVLAVVQILVHLVFFLHLNTSS--EQ-------------RWNLISLLFTILIIFILIG 82 (96)
T ss_pred ccCCHhHHHHHHHHHHHHHHHHHHHHHhhccCcc--cc-------------chHHHHHHHHHHHHHHHHH
Confidence 4578888888888889888999999999886421 11 2565555655555544443
No 115
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=25.56 E-value=1.5e+02 Score=24.78 Aligned_cols=48 Identities=23% Similarity=0.320 Sum_probs=34.9
Q ss_pred HHHHHHHHcCCEEEEEc-CCHHHHHHHHhCCCccccCCcceecCHHHHHHHH
Q 006373 576 EIKKVVDRRGLKLLLAN-PRSEVIKKLNNSKFIENIGQEWIYLTVAEAVAAC 626 (648)
Q Consensus 576 ~l~~~~~~~gi~l~l~~-~~~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~ 626 (648)
.+.+.+.+.|+++++++ ..+..++.|+..|+.-..... .+++|+++..
T Consensus 54 ~~~~~l~~~~v~~vi~~~iG~~~~~~l~~~gI~v~~~~~---~~i~~vl~~~ 102 (103)
T cd00851 54 KAAEFLADEGVDVVIVGGIGPRALNKLRNAGIKVYKGAE---GTVEEAIEAL 102 (103)
T ss_pred HHHHHHHHcCCCEEEeCCCCcCHHHHHHHCCCEEEEcCC---CCHHHHHHhh
Confidence 35556666999999986 478899999999985443322 6888888653
No 116
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=25.17 E-value=7.9e+02 Score=25.54 Aligned_cols=28 Identities=14% Similarity=0.357 Sum_probs=22.5
Q ss_pred EEEEecCceEEechHHHHHHHHHHHHHH
Q 006373 514 LILHIDAPIYFANASYLRERISRWIYEE 541 (648)
Q Consensus 514 ~ivrl~g~L~F~na~~~~~~l~~~i~~~ 541 (648)
..+.+++.+...++.++.+++++.++++
T Consensus 249 ~~i~v~~~ls~~eah~I~~~ie~~i~~~ 276 (304)
T COG0053 249 VHIEVDPDLSLEEAHEIADEVEKRIKKE 276 (304)
T ss_pred EEEEECCCCChHHHHHHHHHHHHHHHHh
Confidence 3456788899999999999998887765
No 117
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=25.15 E-value=1.3e+02 Score=32.80 Aligned_cols=38 Identities=13% Similarity=0.222 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhh---hhhhHH-hhchHhHHHHHHhhhHHHHH
Q 006373 163 FAGVFQASLGFL---RLGFVV-DFLSHATIVGFMGGAATVVC 200 (648)
Q Consensus 163 l~Gi~~~llg~~---~lg~l~-~~lp~~Vi~Gf~~gigl~i~ 200 (648)
....+.+++|.+ |+.++. -++|.||++|++.++.+.+.
T Consensus 10 ~la~~lLllG~~Lr~kv~~Lqk~~IPapViGGll~al~l~l~ 51 (398)
T TIGR00210 10 VVAILVLLLGRYLVKKIKFLKSFNIPEPVVGGVLVALALLLI 51 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 334445555543 356664 48999999999998777766
No 118
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=25.07 E-value=1.6e+02 Score=24.13 Aligned_cols=49 Identities=18% Similarity=0.237 Sum_probs=36.6
Q ss_pred HHHHHHHHcCCEEEEEc-CCHHHHHHHHhCCCccccCCcceecCHHHHHHHHH
Q 006373 576 EIKKVVDRRGLKLLLAN-PRSEVIKKLNNSKFIENIGQEWIYLTVAEAVAACN 627 (648)
Q Consensus 576 ~l~~~~~~~gi~l~l~~-~~~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~~ 627 (648)
++.+.+.++|+++++++ ..+...+.|+..|+.-... .-.+++||++...
T Consensus 44 ~~~~~l~~~~v~~li~~~iG~~~~~~L~~~gI~v~~~---~~~~i~~~l~~~~ 93 (94)
T PF02579_consen 44 KIAKFLAEEGVDVLICGGIGEGAFRALKEAGIKVYQG---AGGDIEEALEAYL 93 (94)
T ss_dssp HHHHHHHHTTESEEEESCSCHHHHHHHHHTTSEEEES---TSSBHHHHHHHHH
T ss_pred hHHHHHHHcCCCEEEEeCCCHHHHHHHHHCCCEEEEc---CCCCHHHHHHHHh
Confidence 35566666999999986 5888999999999843331 4567899988754
No 119
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=24.83 E-value=2.6e+02 Score=30.06 Aligned_cols=58 Identities=5% Similarity=-0.148 Sum_probs=34.7
Q ss_pred HHHHHHHHHcCCEEEEEcCCH----HHHHHHHhCCCccccCCcceecCHHHHHHHHHHhhhcCCCCCcc
Q 006373 575 EEIKKVVDRRGLKLLLANPRS----EVIKKLNNSKFIENIGQEWIYLTVAEAVAACNFMLHTCKSNPEV 639 (648)
Q Consensus 575 ~~l~~~~~~~gi~l~l~~~~~----~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~~~~l~~~~~~~~~ 639 (648)
.++.+.+.+.+..+++||... .+++.|...+.-. --.|.++|-++. +.+.++.+..++
T Consensus 319 ~~~~~~l~~~~~~vYvCG~~~~M~~~V~~~L~~~~~~~------~~~~~~~a~~~~-~~l~~~~Ry~~d 380 (382)
T cd06207 319 DLVYQLLEEGAGVIYVCGSTWKMPPDVQEAFEEILKKH------GGGDEELAEKKI-EELEERGRYVVE 380 (382)
T ss_pred HHHHHHHhcCCCEEEEECCcccccHHHHHHHHHHHHHh------CCCCHHHHHHHH-HHHHHcCCeeee
Confidence 334444544455899998776 6777776654321 124567887777 446666555443
No 120
>PTZ00445 p36-lilke protein; Provisional
Probab=24.78 E-value=1.6e+02 Score=28.89 Aligned_cols=48 Identities=15% Similarity=0.252 Sum_probs=38.3
Q ss_pred CCceEEEEEecC--CC-----ccchH---------HHHHHHHHHHHHHHcCCEEEEEcCCHHHH
Q 006373 551 TGLQYVILDMSS--VG-----SIDTS---------GISMFEEIKKVVDRRGLKLLLANPRSEVI 598 (648)
Q Consensus 551 ~~~~~vILD~s~--v~-----~IDss---------gl~~L~~l~~~~~~~gi~l~l~~~~~~v~ 598 (648)
..+|.|+.|+.+ +. +.|-. +-..++++.+++++.|+++.++--++++.
T Consensus 41 ~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~ 104 (219)
T PTZ00445 41 CGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKEL 104 (219)
T ss_pred cCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhh
Confidence 469999999875 34 55554 66679999999999999999998887743
No 121
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=24.55 E-value=1.6e+02 Score=26.49 Aligned_cols=67 Identities=18% Similarity=0.221 Sum_probs=38.6
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHHcCC---EEEEEcCC-------HHHHHHHHhCCCccccCCcceecCHHH
Q 006373 552 GLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGL---KLLLANPR-------SEVIKKLNNSKFIENIGQEWIYLTVAE 621 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi---~l~l~~~~-------~~v~~~l~~~g~~~~~~~~~if~s~~~ 621 (648)
+...|-+. .+=.+....+.++.++++++|. .+++=+.- ++.++.|++.|+...+++.. +.++
T Consensus 50 ~adiVglS-----~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt---~~~~ 121 (128)
T cd02072 50 DADAILVS-----SLYGHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEMGFDRVFAPGT---PPEE 121 (128)
T ss_pred CCCEEEEe-----ccccCCHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHHHcCCCEEECcCC---CHHH
Confidence 34555553 3334445666777777777654 44444431 34567899999965554321 6666
Q ss_pred HHHHH
Q 006373 622 AVAAC 626 (648)
Q Consensus 622 Av~~~ 626 (648)
.++..
T Consensus 122 i~~~l 126 (128)
T cd02072 122 AIADL 126 (128)
T ss_pred HHHHH
Confidence 66654
No 122
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=24.43 E-value=4.8e+02 Score=22.75 Aligned_cols=32 Identities=28% Similarity=0.204 Sum_probs=27.1
Q ss_pred hhchHhHHHHHHhhhHHHHHHhhhhhhhCccc
Q 006373 181 DFLSHATIVGFMGGAATVVCLQQLKGILGLVR 212 (648)
Q Consensus 181 ~~lp~~Vi~Gf~~gigl~i~~~ql~~~~G~~~ 212 (648)
+-+|+.....++.+.|+.=+..|+..++-++.
T Consensus 39 ~~~~~~~~~~~i~~lA~vQi~VqL~~FLHl~~ 70 (109)
T PRK10582 39 GAASPAVILGTILAMAVVQILVHLVCFLHMNT 70 (109)
T ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 46789888888888888888999999998863
No 123
>PRK04596 minC septum formation inhibitor; Reviewed
Probab=24.11 E-value=3.2e+02 Score=27.56 Aligned_cols=75 Identities=15% Similarity=0.152 Sum_probs=48.0
Q ss_pred echHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEE-EEcCCHHHHHHHHh
Q 006373 525 ANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLL-LANPRSEVIKKLNN 603 (648)
Q Consensus 525 ~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~-l~~~~~~v~~~l~~ 603 (648)
.+.+.+.+.+.+.++..++ .=+-..||||++.+..-. ...-|..+.+.++++|...+ +.+.+++.++.-..
T Consensus 28 ~d~~~l~~~L~~ki~~aP~------FF~~~PvVlDl~~l~~~~--~~~dl~~L~~~Lr~~gl~~vGV~g~~~~~~~~a~~ 99 (248)
T PRK04596 28 LDVPRLVQEMRERVTRAPK------LFGRAAVILDFGGLSQVP--DLATAKALLDGLRSAGVLPVALAYGTSEIDLLSQQ 99 (248)
T ss_pred CCHHHHHHHHHHHHHhChH------hhCCCcEEEEchhhcCcc--ccccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH
Confidence 4566777777776654311 113467999999986311 00125668888899998765 55677777666666
Q ss_pred CCCc
Q 006373 604 SKFI 607 (648)
Q Consensus 604 ~g~~ 607 (648)
.|+-
T Consensus 100 ~gL~ 103 (248)
T PRK04596 100 LGLP 103 (248)
T ss_pred CCCC
Confidence 7763
No 124
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=23.97 E-value=2.3e+02 Score=31.02 Aligned_cols=72 Identities=13% Similarity=0.069 Sum_probs=47.9
Q ss_pred CCceEEEEE-ecCCCccchHHHHHHHHHHHHHHH-cCCEEEEEcCC-HHHHHHHHhCCCccccCCcceecCHHHHHHHHH
Q 006373 551 TGLQYVILD-MSSVGSIDTSGISMFEEIKKVVDR-RGLKLLLANPR-SEVIKKLNNSKFIENIGQEWIYLTVAEAVAACN 627 (648)
Q Consensus 551 ~~~~~vILD-~s~v~~IDssgl~~L~~l~~~~~~-~gi~l~l~~~~-~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~~ 627 (648)
++++.|.++ |.+++.-|--+ +.+.+..+++.. .-+-+.+.+.+ ++-++.|+.+|+ +. ..++|++||++.+-
T Consensus 344 ~~vk~iliNIfGGI~~cd~iA-~gii~a~~~~~~~~pivvRl~Gtn~~~g~~~l~~~~~-~~----~~~~~l~~A~~~~v 417 (422)
T PLN00124 344 DKVKAILVNIFGGIMKCDVIA-SGIVNAAKQVGLKVPLVVRLEGTNVDQGKRILKESGM-TL----ITAEDLDDAAEKAV 417 (422)
T ss_pred CCCcEEEEEecCCccchHHHH-HHHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHHhCCC-Ce----EEcCCHHHHHHHHH
Confidence 568888887 46777778877 455555444421 12344555665 346888988887 22 58999999999875
Q ss_pred H
Q 006373 628 F 628 (648)
Q Consensus 628 ~ 628 (648)
+
T Consensus 418 ~ 418 (422)
T PLN00124 418 K 418 (422)
T ss_pred H
Confidence 4
No 125
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=23.44 E-value=1.9e+02 Score=28.42 Aligned_cols=38 Identities=8% Similarity=0.249 Sum_probs=30.7
Q ss_pred CCceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEE
Q 006373 551 TGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLL 589 (648)
Q Consensus 551 ~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~ 589 (648)
++++.|+|+...-.+ +.+.++.+.+..+++++.+..++
T Consensus 45 ~~ik~vvL~~~s~gg-~~~~~~el~~~i~~~~~~~kpVi 82 (222)
T cd07018 45 DRIKGIVLDLDGLSG-GLAKLEELRQALERFRASGKPVI 82 (222)
T ss_pred CCeEEEEEECCCCCC-CHHHHHHHHHHHHHHHHhCCeEE
Confidence 579999999988777 88888888888888887666553
No 126
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=23.37 E-value=97 Score=26.54 Aligned_cols=42 Identities=12% Similarity=0.186 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhhhhcccccchhhccchhHHHHHHHHHHHH
Q 006373 240 LGCCFLLFLLLTRYFSKKKATFFWINAMAPLTSVILGSVLVY 281 (648)
Q Consensus 240 i~~~~l~~l~~~~~~~~~~~~~~~~p~~~~Li~vvi~t~i~~ 281 (648)
+.+.+++-+++.+++.++++...+...+..++++++|..-+|
T Consensus 52 ~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~~n~w 93 (100)
T TIGR02230 52 VAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGCLNAW 93 (100)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 334445555666777777765333322234444444444333
No 127
>TIGR03580 EF_0832 conserved hypothetical protein EF_0832/AHA_3913. Members of this family of relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=23.18 E-value=1.3e+02 Score=28.41 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=16.7
Q ss_pred Chhh--hhhhhhhHHHHHHh-----hhhhHHHHH
Q 006373 68 TFEF--FKSDLLAGITIASL-----AVPQGISYA 94 (648)
Q Consensus 68 ~~~~--l~~Di~aGltv~~~-----~iPq~~aya 94 (648)
++++ +.+-+++-++|+.+ ++|+++...
T Consensus 81 ~PkKM~iag~iIG~ivVafLN~ta~aiP~sLq~~ 114 (233)
T TIGR03580 81 NPKKMGIAGGIIGMIVVAFLNSTASAIPESLQVT 114 (233)
T ss_pred ChHHhhHHHhhhHHHHHHHHhhhHhhhhHHHHHH
Confidence 4444 45666666666654 688877654
No 128
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=22.86 E-value=4.3e+02 Score=28.41 Aligned_cols=87 Identities=20% Similarity=0.203 Sum_probs=46.8
Q ss_pred echHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEec-CCCccchHHHHHHHHHHHHHHHcCCEEEEE--cCC-HHHHHH
Q 006373 525 ANASYLRERISRWIYEEEEKLKISGETGLQYVILDMS-SVGSIDTSGISMFEEIKKVVDRRGLKLLLA--NPR-SEVIKK 600 (648)
Q Consensus 525 ~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s-~v~~IDssgl~~L~~l~~~~~~~gi~l~l~--~~~-~~v~~~ 600 (648)
.+.+.+.+.++...+ .++++.+++... +....|..+ +.+.+..++.. .+..++.+ +.+ +..++.
T Consensus 293 a~~~~~~~al~~l~~----------dp~vd~ilv~i~gg~~~~~~va-~~i~~a~~~~~-~~kPvvv~~~g~~~~~~~~~ 360 (386)
T TIGR01016 293 ASAERVREALKLVLS----------DKSVKVVFINIFGGITRCDLVA-KGLVEALKEVG-VNVPVVVRLEGTNVEEGKKI 360 (386)
T ss_pred CCHHHHHHHHHHHHc----------CCCCCEEEEECCCCCCCHHHHH-HHHHHHHHhcC-CCCcEEEEeCCccHHHHHHH
Confidence 344555555544333 245777776544 333333322 44444444431 11555333 212 446777
Q ss_pred HHhCCCccccCCcceecCHHHHHHHHHH
Q 006373 601 LNNSKFIENIGQEWIYLTVAEAVAACNF 628 (648)
Q Consensus 601 l~~~g~~~~~~~~~if~s~~~Av~~~~~ 628 (648)
|+.+|+ .+ ..|.+.++|++.+-+
T Consensus 361 L~~~G~--~i---p~~~~~~~Av~~~~~ 383 (386)
T TIGR01016 361 LAESGL--NI---IFATSMEEAAEKAVE 383 (386)
T ss_pred HHHcCC--Cc---cccCCHHHHHHHHHH
Confidence 998884 11 489999999988754
No 129
>TIGR00931 antiport_nhaC Na+/H+ antiporter NhaC. A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterized.It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria.
Probab=22.80 E-value=1.1e+03 Score=26.21 Aligned_cols=91 Identities=10% Similarity=0.045 Sum_probs=48.0
Q ss_pred hhhHHhhchHhHHHHHHhhhHHHHHHhhhhhhhCcccccCCCchHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHhhhh
Q 006373 176 LGFVVDFLSHATIVGFMGGAATVVCLQQLKGILGLVRFTHATDLQSVMRSVFSQTSQWRWESGVLGCCFLLFLLLTRYFS 255 (648)
Q Consensus 176 lg~l~~~lp~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~ 255 (648)
...+..-+|..+....++.+...++-.+. +......+-.+.+.+.+++..+.++..++--++.+++.+ .
T Consensus 181 ~~~v~~~~~~~~~a~~i~~v~~~i~g~~~------~~~~~~~~~~~~~~~~l~~~~~~~~l~LlP~ilvIiLal----~- 249 (454)
T TIGR00931 181 FDHIRHLLYTTVPSFVITAILFLVIGRSY------ATSNTQPDKVQAMLTALDSQFTLSVLTLIPPLLVVILAM----R- 249 (454)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc------ccccCcHhHHHHHHHHHHccCCCCHHHHHHHHHHHHHHH----h-
Confidence 35667888999999998888887763211 100011112233333445555567665554443333322 1
Q ss_pred cccccchhhccchhHHHHHHHHHHHHhc
Q 006373 256 KKKATFFWINAMAPLTSVILGSVLVYFT 283 (648)
Q Consensus 256 ~~~~~~~~~p~~~~Li~vvi~t~i~~~~ 283 (648)
|.+- .++.+++++++.+++...
T Consensus 250 -~~~v-----i~aL~igi~~g~ii~~~~ 271 (454)
T TIGR00931 250 -KKPT-----IPVLVVGALTGIITAAFV 271 (454)
T ss_pred -CCCh-----HHHHHHHHHHHHHHHHHh
Confidence 1121 125667777777766554
No 130
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=22.63 E-value=5.5e+02 Score=27.82 Aligned_cols=89 Identities=13% Similarity=0.052 Sum_probs=48.6
Q ss_pred echHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEec-CCCccchHHHHHHHHHHHHHHHcCCEEEEEc---CCHHHHHH
Q 006373 525 ANASYLRERISRWIYEEEEKLKISGETGLQYVILDMS-SVGSIDTSGISMFEEIKKVVDRRGLKLLLAN---PRSEVIKK 600 (648)
Q Consensus 525 ~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s-~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~---~~~~v~~~ 600 (648)
.+.+.+++.++..+++ ++++.|++... ..+..|.. .+.+.+..++. +.+..++.+- ..+..++.
T Consensus 293 a~~e~~~~aL~~ll~D----------p~VdaVlv~i~ggi~~~~~v-A~~Ii~a~~~~-~~~kPvvv~l~G~~~e~~~~i 360 (392)
T PRK14046 293 ASPERVAKAFRLVLSD----------RNVKAILVNIFAGINRCDWV-AEGVVQAAREV-GIDVPLVVRLAGTNVEEGRKI 360 (392)
T ss_pred CCHHHHHHHHHHHHcC----------CCCCEEEEEcCCCCCCHHHH-HHHHHHHHHhc-CCCCcEEEEcCCCCHHHHHHH
Confidence 3556666665554432 45777776544 33333332 24444444332 1455563332 22446677
Q ss_pred HHhCCCccccCCcceecCHHHHHHHHHHhh
Q 006373 601 LNNSKFIENIGQEWIYLTVAEAVAACNFML 630 (648)
Q Consensus 601 l~~~g~~~~~~~~~if~s~~~Av~~~~~~l 630 (648)
|+.+|+- . ..+.|++||++.+-+..
T Consensus 361 L~~~Gip-v----f~~~~~~~a~~~~v~~~ 385 (392)
T PRK14046 361 LAESGLP-I----ITADTLAEAAEKAVEAW 385 (392)
T ss_pred HHHcCCC-e----eecCCHHHHHHHHHHHH
Confidence 9888872 2 35688999998877543
No 131
>COG2450 Uncharacterized conserved protein [Function unknown]
Probab=22.41 E-value=3.2e+02 Score=24.31 Aligned_cols=37 Identities=19% Similarity=0.236 Sum_probs=31.5
Q ss_pred eEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEE
Q 006373 554 QYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLL 590 (648)
Q Consensus 554 ~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l 590 (648)
..||.|.+.+..-|-+--+.++++.+..++.|..+.-
T Consensus 65 NIvIaDit~l~~d~~~~~~V~e~lr~~a~~~ggdi~~ 101 (124)
T COG2450 65 NIVIADITPLERDDDLFERVIEELRDTAEEVGGDIAK 101 (124)
T ss_pred CEEEEEcCCcccChhHHHHHHHHHHHHHHHhCchhhh
Confidence 6899999999998888888899999998888876543
No 132
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=22.38 E-value=3.4e+02 Score=28.90 Aligned_cols=108 Identities=12% Similarity=0.218 Sum_probs=75.1
Q ss_pred ccCCcEEEEEecCceEEechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCE
Q 006373 508 KSVPGVLILHIDAPIYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLK 587 (648)
Q Consensus 508 ~~~~~v~ivrl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~ 587 (648)
+++|.++++|+..-+--.+=.++.+.+.+++.+. ...-.++..+.+-+.||..+.++.+. +++.|+.
T Consensus 185 ~~IpHv~iiRi~TR~pvv~P~RIt~~L~~~l~~~---------~~~v~~~tH~NHp~Eit~e~~~A~~~----L~~aGv~ 251 (369)
T COG1509 185 RAIPHVKIIRIGTRLPVVLPQRITDELCEILGKS---------RKPVWLVTHFNHPNEITPEAREACAK----LRDAGVP 251 (369)
T ss_pred hcCCceeEEEeecccceechhhccHHHHHHHhcc---------CceEEEEcccCChhhcCHHHHHHHHH----HHHcCce
Confidence 4678899999988777677677777777766542 23568899999999999998776654 5556664
Q ss_pred -----EEEEcCCHH--H----HHHHHhCCCccc--------cCCcceecCHHHHHHHHHH
Q 006373 588 -----LLLANPRSE--V----IKKLNNSKFIEN--------IGQEWIYLTVAEAVAACNF 628 (648)
Q Consensus 588 -----l~l~~~~~~--v----~~~l~~~g~~~~--------~~~~~if~s~~~Av~~~~~ 628 (648)
+++-|+|++ + .+.|...|+... -|..|+..+++++.+-.+.
T Consensus 252 l~NQsVLLrGVND~~evl~~L~~~L~~~gV~PYYl~~~D~~~G~~hfr~~i~~~~~i~~~ 311 (369)
T COG1509 252 LLNQSVLLRGVNDDPEVLKELSRALFDAGVKPYYLHQLDLVQGAAHFRVPIAEGLQIVEE 311 (369)
T ss_pred eecchheecccCCCHHHHHHHHHHHHHcCCcceEEeccCccCCccceeccHHHHHHHHHH
Confidence 456666543 3 455566665431 1345888899999887654
No 133
>PF02308 MgtC: MgtC family; InterPro: IPR003416 The MgtC protein is found in an operon with the Mg2+ transporter protein MgtB. The function of MgtC and its homologues is not known, but it is thought that MgtC may act as an accessory protein for MgtB, thus mediating magnesium influx into the cytosol. Also included in this family are the Bacillus subtilis SapB protein and several hypothetical proteins.; GO: 0016020 membrane
Probab=22.19 E-value=4.7e+02 Score=23.52 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=20.5
Q ss_pred cchhhHhhhcCCCc-hhHHHHHHHHHHHHHHHhh
Q 006373 376 FSRSAVNFNAGCKT-AVSNIVMATAVMITLLFLT 408 (648)
Q Consensus 376 ~srs~~~~~~G~~t-~la~i~~a~i~ll~~l~l~ 408 (648)
+-|---+..+|-|| .+.++.+++..++...+..
T Consensus 13 lERe~~~~~aG~RTf~Lv~l~g~l~~~l~~~~~~ 46 (134)
T PF02308_consen 13 LEREWRGKPAGLRTFALVSLAGALSALLSSEFFL 46 (134)
T ss_pred hhcccccCCCCccchHHHHHHHHHHHHHHHHHHh
Confidence 34444447788888 5677777776666554433
No 134
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=21.80 E-value=3.2e+02 Score=24.19 Aligned_cols=67 Identities=15% Similarity=0.222 Sum_probs=40.0
Q ss_pred CCcEEEEEecCceEEechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEE
Q 006373 510 VPGVLILHIDAPIYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKL 588 (648)
Q Consensus 510 ~~~v~ivrl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l 588 (648)
..|..+++++||+.|+-..-+..-++. +.++ .+-..++.--...||=..+ +-|++..+.+++.|-++
T Consensus 60 ~~GW~~lk~~gpf~FgltGilasV~~p-Lsd~----------gigIFavStydtDhiLVr~-~dLekAv~~L~eaGhev 126 (128)
T COG3603 60 EKGWSCLKFEGPFDFGLTGILASVSQP-LSDN----------GIGIFAVSTYDTDHILVRE-EDLEKAVKALEEAGHEV 126 (128)
T ss_pred cCCeEEEEEeccccCCcchhhhhhhhh-HhhC----------CccEEEEEeccCceEEEeh-hhHHHHHHHHHHcCCcc
Confidence 358999999999999986655544433 3222 2333333333333333222 55777777777777655
No 135
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=21.79 E-value=1.6e+02 Score=27.98 Aligned_cols=47 Identities=21% Similarity=0.297 Sum_probs=33.3
Q ss_pred EEEEEecCceEEechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHH
Q 006373 513 VLILHIDAPIYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSG 570 (648)
Q Consensus 513 v~ivrl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssg 570 (648)
+.+++++|.+.....+++++.+++..+ .+.+.++++...-...-.++
T Consensus 1 v~vi~i~g~I~~~~~~~l~~~l~~a~~-----------~~~~~ivl~inspGG~v~~~ 47 (178)
T cd07021 1 VYVIPIEGEIDPGLAAFVERALKEAKE-----------EGADAVVLDIDTPGGRVDSA 47 (178)
T ss_pred CEEEEEeeEECHHHHHHHHHHHHHHHh-----------CCCCeEEEEEECcCCCHHHH
Confidence 368899999998888877777766433 23678999887666553333
No 136
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=21.67 E-value=1.3e+02 Score=29.16 Aligned_cols=54 Identities=15% Similarity=0.222 Sum_probs=39.9
Q ss_pred hhchhHHHHHHHHHHHhhcc-CHHHHHHHhccCccchhHHhhhhhhhhhccchhh
Q 006373 412 HYTPLVVLSSIIIAAMLGLI-DYEAVIHLWKLDKFDFIVCMSAYVGVVFGSVEIG 465 (648)
Q Consensus 412 ~~iP~~vLa~ili~~~~~li-~~~~~~~l~~~~~~d~~i~~~t~~~~~~~~~~~G 465 (648)
..+...+|-.+++.+|.++= +...++++++.++.-..+.+.+.+.++..++..+
T Consensus 23 ~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~ 77 (191)
T PF03956_consen 23 DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLAS 77 (191)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888899885 5677888998998888777777666655444333
No 137
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=21.64 E-value=2.6e+02 Score=26.64 Aligned_cols=51 Identities=14% Similarity=0.056 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhH---HhhchHhHHHHHHhhhHHHHHHhhhhhhh
Q 006373 158 LTATFFAGVFQASLGFLRLGFV---VDFLSHATIVGFMGGAATVVCLQQLKGIL 208 (648)
Q Consensus 158 ~~~~~l~Gi~~~llg~~~lg~l---~~~lp~~Vi~Gf~~gigl~i~~~ql~~~~ 208 (648)
..+.++.|++.++.|...+-.. .-.+..+.+++.+.++|+.++...+..+.
T Consensus 8 ~i~~iilgilli~~gI~~Lv~~~~~l~~~~s~~lg~~~lAlg~vL~~~g~~~~~ 61 (191)
T PF04156_consen 8 SIILIILGILLIASGIAALVLFISGLGALISFILGIALLALGVVLLSLGLLCLL 61 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555444444322111 11222444555566666666666555443
No 138
>PRK01973 septum formation inhibitor; Reviewed
Probab=21.11 E-value=3.9e+02 Score=27.38 Aligned_cols=73 Identities=10% Similarity=0.131 Sum_probs=47.1
Q ss_pred echHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHhC
Q 006373 525 ANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANPRSEVIKKLNNS 604 (648)
Q Consensus 525 ~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~~~~v~~~l~~~ 604 (648)
.+.+.|.+.+.+.++...+ -=+-..||||++.+..-+. .-|..+.+.++++|...+=+..+++.++.-...
T Consensus 26 ~d~~~l~~~L~~ki~~aP~------FF~~aPvVlDl~~l~~~~~---~dl~~L~~~lr~~gl~~VGV~g~~~~~~~a~~~ 96 (271)
T PRK01973 26 ADLDALRAELVKRFEATPE------FFADDVVAIDVRRLADDER---VPLDDIRQMLNDVRMRPIGVVAQPAQQGWAGEA 96 (271)
T ss_pred CCHHHHHHHHHHHHHhChH------hhcCCCEEEEchHhCCCcc---cCHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc
Confidence 4556677777766554311 1123568999999975331 126668888899998777665666666666667
Q ss_pred CC
Q 006373 605 KF 606 (648)
Q Consensus 605 g~ 606 (648)
|+
T Consensus 97 gL 98 (271)
T PRK01973 97 GL 98 (271)
T ss_pred CC
Confidence 76
No 139
>PRK00972 tetrahydromethanopterin S-methyltransferase subunit E; Provisional
Probab=20.85 E-value=6.4e+02 Score=25.44 Aligned_cols=86 Identities=15% Similarity=0.232 Sum_probs=50.9
Q ss_pred HhCCCcchhhHhhhhhhhhhhhccCCCccccchhhHHHHHHHHhhhcccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhh
Q 006373 96 LANLPPILGLYSSFVPPLVYAMMGSSKDLAVGTVAVGSLLISSMLGKEVNPNENPKLYVQLALTATFFAGVFQASLGFLR 175 (648)
Q Consensus 96 laglpp~~gl~~~~~~~li~~~~Gss~~~~~Gp~a~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Gi~~~llg~~~ 175 (648)
++|=||.|||+.++-+.+.|+++. .+-..++++.+++.+..+. +.+...+--.|=+ .+.-|
T Consensus 58 iSGEP~aygl~~ai~g~vA~~lm~------~~~~~vlAi~~Ga~vaa~v----------hg~ya~taylGR~---asq~~ 118 (292)
T PRK00972 58 ISGEPVAYGLWCAIAGAVAWALMA------FGLNPVLAIIVGAGVAALV----------HGVYATTAYLGRI---ASQSK 118 (292)
T ss_pred ccCCCchhHHHHHHHHHHHHHHHH------cCccHHHHHHHHHHHHHHH----------HHHHHHHHHHhHH---HHHHh
Confidence 468899999999999999999862 2333455666666655432 2223222222221 11111
Q ss_pred ------hhhHHhhchHhHHHHHHhhhHHHHH
Q 006373 176 ------LGFVVDFLSHATIVGFMGGAATVVC 200 (648)
Q Consensus 176 ------lg~l~~~lp~~Vi~Gf~~gigl~i~ 200 (648)
+.-+..-+|+.+-.+|++.-++..+
T Consensus 119 F~QPvylDvl~sh~~~i~~haFIa~Fci~~~ 149 (292)
T PRK00972 119 FGQPVYLDVLRSHTGPIMGHAFIATFCIVTL 149 (292)
T ss_pred cCCceeHHHHHhhchhHHHHHHHHHHHHHHH
Confidence 3445566777777788777666544
No 140
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=20.78 E-value=1.9e+02 Score=29.74 Aligned_cols=65 Identities=12% Similarity=0.346 Sum_probs=46.0
Q ss_pred EEecCceEEechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcCCH
Q 006373 516 LHIDAPIYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANPRS 595 (648)
Q Consensus 516 vrl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~~~ 595 (648)
+.++-|- .+...+|+.+++.+++. .++-.||.|. .+++ +.|.++.+...+|++.+|+.--..
T Consensus 123 vy~qPp~--~~~p~IKE~vR~~I~~A---------~kVIAIVMD~--FTD~-----dIf~DLleAa~kR~VpVYiLLD~~ 184 (284)
T PF07894_consen 123 VYFQPPK--DGQPHIKEVVRRMIQQA---------QKVIAIVMDV--FTDV-----DIFCDLLEAANKRGVPVYILLDEQ 184 (284)
T ss_pred EEeCCCC--CCCCCHHHHHHHHHHHh---------cceeEEEeec--cccH-----HHHHHHHHHHHhcCCcEEEEechh
Confidence 4445444 67888999999999876 2344555554 4444 579999999999999999974444
Q ss_pred HHH
Q 006373 596 EVI 598 (648)
Q Consensus 596 ~v~ 598 (648)
.+.
T Consensus 185 ~~~ 187 (284)
T PF07894_consen 185 NLP 187 (284)
T ss_pred cCh
Confidence 444
No 141
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=20.66 E-value=8.2e+02 Score=24.98 Aligned_cols=62 Identities=13% Similarity=0.229 Sum_probs=36.9
Q ss_pred hhhhhhhchhHHHHHHHHH------HHhhccCHHHHHHHhccCccchhHHhhhhhhhhhccc--hhhHH-HHHHHHH
Q 006373 407 LTPLFHYTPLVVLSSIIIA------AMLGLIDYEAVIHLWKLDKFDFIVCMSAYVGVVFGSV--EIGLV-IAVTISL 474 (648)
Q Consensus 407 l~~ll~~iP~~vLa~ili~------~~~~li~~~~~~~l~~~~~~d~~i~~~t~~~~~~~~~--~~Gl~-~Gv~~sl 474 (648)
...+++.+|..++.++-+. .|+.|+ ++.+|| |..+.-.++.|+.+.++++ ..|+. +|+++++
T Consensus 167 v~~~~~~iP~~v~~GL~vaggmLPAvGfAmL----l~~m~~--k~~~~ff~lGF~l~ayl~~~~~i~iaiig~~iA~ 237 (267)
T PRK09757 167 MQALVKAMPAWLTHGFEVAGGILPAVGFGLL----LRVMFK--AQYIPYLIAGFLFVCYIQVSNLLPVAVLGAGFAV 237 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHH----HHHHhh--cchHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 5567899999977665443 333332 345554 3344455678888888875 34543 3555555
No 142
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=20.42 E-value=1.6e+02 Score=24.75 Aligned_cols=15 Identities=40% Similarity=0.576 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHHhc
Q 006373 269 PLTSVILGSVLVYFT 283 (648)
Q Consensus 269 ~Li~vvi~t~i~~~~ 283 (648)
|++.+++|.+++...
T Consensus 37 PlIs~viGilLG~~~ 51 (93)
T PF06946_consen 37 PLISVVIGILLGAAA 51 (93)
T ss_pred hHHHHHHHHHHHHHh
Confidence 466666666655443
No 143
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=20.28 E-value=7.2e+02 Score=26.70 Aligned_cols=88 Identities=14% Similarity=0.034 Sum_probs=47.2
Q ss_pred echHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEec-CCCccchHHHHHHHHHHHHHHHcCCEEEEEcC---CHHHHHH
Q 006373 525 ANASYLRERISRWIYEEEEKLKISGETGLQYVILDMS-SVGSIDTSGISMFEEIKKVVDRRGLKLLLANP---RSEVIKK 600 (648)
Q Consensus 525 ~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s-~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~---~~~v~~~ 600 (648)
.+.+.+++.++...++ +.++.+++.+. ..+..|. -.+.+.+..++. +.+..++.+.. .++.++.
T Consensus 293 ~~~e~~~~aL~~l~~d----------~~vd~vlv~~~~~~~~~~~-va~~i~~~~~~~-~~~kPvv~~~~g~~~~~~~~~ 360 (388)
T PRK00696 293 ATAERVAEAFKIILSD----------PNVKAILVNIFGGITRCDV-IAEGIIAAVKEV-GVTVPLVVRLEGTNVELGKKI 360 (388)
T ss_pred CCHHHHHHHHHHHhcC----------CCCCEEEEEeCCCCCCHHH-HHHHHHHHHHhc-CCCCcEEEEeCCCCHHHHHHH
Confidence 4556666666554432 35666665444 2222222 223333333321 14556644322 2456777
Q ss_pred HHhCCCccccCCcceecCHHHHHHHHHHh
Q 006373 601 LNNSKFIENIGQEWIYLTVAEAVAACNFM 629 (648)
Q Consensus 601 l~~~g~~~~~~~~~if~s~~~Av~~~~~~ 629 (648)
|+..|+ . -.+|+|.++|+.+..+.
T Consensus 361 L~~~Gi-~----ip~f~~pe~A~~al~~~ 384 (388)
T PRK00696 361 LAESGL-N----IIAADTLDDAAQKAVEA 384 (388)
T ss_pred HHHCCC-C----ceecCCHHHHHHHHHHH
Confidence 888884 0 14899999999987643
No 144
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=20.20 E-value=4.2e+02 Score=25.34 Aligned_cols=71 Identities=17% Similarity=0.223 Sum_probs=39.4
Q ss_pred CceEEEEEecCCCccc-hHHHHHHHHHHHHHHHcCCEEEEE--cCCHHHHHHHHhCCCccccCCcceecCHHHHHHH
Q 006373 552 GLQYVILDMSSVGSID-TSGISMFEEIKKVVDRRGLKLLLA--NPRSEVIKKLNNSKFIENIGQEWIYLTVAEAVAA 625 (648)
Q Consensus 552 ~~~~vILD~s~v~~ID-ssgl~~L~~l~~~~~~~gi~l~l~--~~~~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~ 625 (648)
++..+++|..- ...+ ..|++.+.++.+.. .+..+++. ..+++..+...+.|....+.+..-...+.+|++.
T Consensus 49 ~~DlvllD~~l-~~~~~~~g~~~~~~l~~~~--~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~ 122 (216)
T PRK10840 49 DAHVLITDLSM-PGDKYGDGITLIKYIKRHF--PSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAA 122 (216)
T ss_pred CCCEEEEeCcC-CCCCCCCHHHHHHHHHHHC--CCCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHH
Confidence 46789999753 2211 25677777776532 33444443 3456666676778887766543223333444443
No 145
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=20.16 E-value=3.5e+02 Score=25.59 Aligned_cols=45 Identities=20% Similarity=0.241 Sum_probs=38.3
Q ss_pred ceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH
Q 006373 553 LQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANPRSEVI 598 (648)
Q Consensus 553 ~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~~~~v~ 598 (648)
++.+++| .....+|....+.+.+..++++++|..++++.-+.+..
T Consensus 108 p~llLlD-EPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~ 152 (176)
T cd03238 108 GTLFILD-EPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVL 152 (176)
T ss_pred CCEEEEe-CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 7888888 56999999999999999999888899998887776543
No 146
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=20.14 E-value=2.2e+02 Score=32.23 Aligned_cols=48 Identities=21% Similarity=0.370 Sum_probs=39.8
Q ss_pred EEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcCCHH----HHHHHHhCCC
Q 006373 558 LDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANPRSE----VIKKLNNSKF 606 (648)
Q Consensus 558 LD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~~~~----v~~~l~~~g~ 606 (648)
-|++.+..+|.+ ..=+..+.+.+++++|.+++.++..+ +...|++.|+
T Consensus 42 ~~~~~~~~~dI~-~~d~~ala~f~~e~~I~lVvvGPE~PL~~Gl~~~l~~~gi 93 (788)
T KOG0237|consen 42 GDASKVPNLDIS-VADFEALASFCKEHNINLVVVGPELPLVAGLADVLRSAGI 93 (788)
T ss_pred CccccCcccccC-hhhHHHHHHHHHHcceeEEEECCchhhhhhhhhhhhccCc
Confidence 588999999988 45677889999999999999998776 4567777775
No 147
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=20.03 E-value=5.5e+02 Score=26.83 Aligned_cols=102 Identities=15% Similarity=0.229 Sum_probs=64.7
Q ss_pred EEecCc-eEEechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcCC
Q 006373 516 LHIDAP-IYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANPR 594 (648)
Q Consensus 516 vrl~g~-L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~~ 594 (648)
+...|| +.=...++|.+++.+.++ +...||+--|-=..+- .+...++.+.++++|.++.+-.-.
T Consensus 104 in~~Gp~is~~~~~~~l~~~~~~l~------------~~d~VvlsGSlP~g~~---~d~y~~li~~~~~~g~~vilD~Sg 168 (310)
T COG1105 104 INFPGPEISEAELEQFLEQLKALLE------------SDDIVVLSGSLPPGVP---PDAYAELIRILRQQGAKVILDTSG 168 (310)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHhcc------------cCCEEEEeCCCCCCCC---HHHHHHHHHHHHhcCCeEEEECCh
Confidence 344444 333444555555555333 3456888877655553 366888999999999999888777
Q ss_pred HHHHHHHHhCCCccccCC-------cceecCHHHHHHHHHHhhhcC
Q 006373 595 SEVIKKLNNSKFIENIGQ-------EWIYLTVAEAVAACNFMLHTC 633 (648)
Q Consensus 595 ~~v~~~l~~~g~~~~~~~-------~~if~s~~~Av~~~~~~l~~~ 633 (648)
+.+++.|+..-+.=+-.. .+-+.+.+|++++++. +..+
T Consensus 169 ~~L~~~L~~~P~lIKPN~~EL~~~~g~~~~~~~d~i~~a~~-l~~~ 213 (310)
T COG1105 169 EALLAALEAKPWLIKPNREELEALFGRELTTLEDVIKAARE-LLAE 213 (310)
T ss_pred HHHHHHHccCCcEEecCHHHHHHHhCCCCCChHHHHHHHHH-HHHC
Confidence 777777776533211111 1567778888888888 4443
Done!