Query 006373
Match_columns 648
No_of_seqs 296 out of 2325
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 23:18:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006373.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006373hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 100.0 2.8E-33 9.5E-38 301.4 31.1 372 40-477 8-403 (429)
2 3llo_A Prestin; STAS domain, c 99.9 4.5E-24 1.6E-28 196.4 11.9 139 483-628 1-140 (143)
3 4dgh_A Sulfate permease family 99.9 3.3E-22 1.1E-26 180.8 10.4 128 494-633 2-129 (130)
4 4dgf_A Sulfate transporter sul 99.9 9.7E-22 3.3E-26 178.9 9.2 130 491-633 2-132 (135)
5 2kln_A Probable sulphate-trans 99.8 4.4E-21 1.5E-25 173.4 8.2 126 498-631 1-126 (130)
6 3ny7_A YCHM protein, sulfate t 99.7 2E-18 7E-23 152.9 7.8 104 509-625 14-117 (118)
7 2ka5_A Putative anti-sigma fac 99.6 7.5E-16 2.6E-20 137.8 7.5 106 507-626 16-122 (125)
8 1h4x_A SPOIIAA, anti-sigma F f 99.6 3.8E-15 1.3E-19 131.6 9.2 108 510-631 9-116 (117)
9 1th8_B Anti-sigma F factor ant 99.6 2.8E-15 9.5E-20 132.1 7.3 105 510-627 10-114 (116)
10 3t6o_A Sulfate transporter/ant 99.6 3.6E-15 1.2E-19 132.6 7.5 105 509-626 11-119 (121)
11 1sbo_A Putative anti-sigma fac 99.5 2.6E-14 8.8E-19 124.5 10.3 100 510-622 11-110 (110)
12 4hyl_A Stage II sporulation pr 99.5 1E-14 3.4E-19 128.9 7.3 103 510-627 11-113 (117)
13 3oiz_A Antisigma-factor antago 99.5 1.3E-14 4.5E-19 124.0 2.7 84 511-607 15-98 (99)
14 3zxn_A RSBS, anti-sigma-factor 99.4 1.4E-12 4.9E-17 115.9 11.5 109 511-632 11-120 (123)
15 3agd_A Salt-tolerant glutamina 95.7 0.018 6E-07 60.2 7.6 84 511-594 324-445 (456)
16 3bl4_A Uncharacterized protein 85.1 0.54 1.9E-05 40.8 3.2 101 511-628 19-123 (124)
17 3qe7_A Uracil permease; uracil 81.8 2.1 7.2E-05 45.5 6.8 16 461-476 391-406 (429)
18 2q3l_A Uncharacterized protein 70.3 6 0.0002 34.1 5.3 105 511-626 19-125 (126)
19 3pdw_A Uncharacterized hydrola 62.2 22 0.00077 34.1 8.5 56 552-607 5-65 (266)
20 2csu_A 457AA long hypothetical 56.0 32 0.0011 36.6 8.9 88 525-631 351-446 (457)
21 3dcm_X AdoMet, uncharacterized 53.4 20 0.00068 33.3 5.8 62 561-628 24-100 (192)
22 2pr7_A Haloacid dehalogenase/e 53.1 17 0.00059 30.5 5.2 58 553-610 2-61 (137)
23 2yxb_A Coenzyme B12-dependent 52.5 32 0.0011 30.8 7.1 75 552-634 69-147 (161)
24 3hv2_A Response regulator/HD d 49.9 29 0.001 29.8 6.3 70 552-626 58-130 (153)
25 3nvb_A Uncharacterized protein 45.0 1.2E+02 0.004 31.4 10.7 53 551-603 220-292 (387)
26 3ghf_A Septum site-determining 44.2 58 0.002 27.6 7.0 80 512-607 16-98 (120)
27 2fp4_B Succinyl-COA ligase [GD 43.7 86 0.0029 32.5 9.6 87 526-629 301-391 (395)
28 2zay_A Response regulator rece 42.7 32 0.0011 29.1 5.3 79 552-633 52-132 (147)
29 3qgm_A P-nitrophenyl phosphata 41.8 39 0.0013 32.3 6.3 56 552-607 7-67 (268)
30 3jte_A Response regulator rece 40.9 53 0.0018 27.5 6.4 72 552-628 49-122 (143)
31 3grc_A Sensor protein, kinase; 40.1 52 0.0018 27.5 6.2 58 552-612 50-110 (140)
32 3n07_A 3-deoxy-D-manno-octulos 39.5 27 0.00091 32.3 4.5 75 552-630 24-112 (195)
33 3epr_A Hydrolase, haloacid deh 38.4 33 0.0011 32.9 5.2 56 552-607 4-64 (264)
34 3kht_A Response regulator; PSI 36.6 44 0.0015 28.1 5.2 79 551-632 50-131 (144)
35 3rst_A Signal peptide peptidas 35.8 92 0.0032 29.7 7.8 67 511-588 3-82 (240)
36 3ib6_A Uncharacterized protein 35.5 32 0.0011 31.2 4.3 58 553-610 3-80 (189)
37 2qv0_A Protein MRKE; structura 34.5 69 0.0024 26.7 6.2 76 552-633 55-131 (143)
38 2r25_B Osmosensing histidine p 34.0 1.5E+02 0.0053 24.2 8.3 57 552-612 52-110 (133)
39 2qxy_A Response regulator; reg 33.4 68 0.0023 26.8 5.9 55 552-612 48-104 (142)
40 3gt7_A Sensor protein; structu 33.1 87 0.003 26.7 6.7 59 551-612 50-110 (154)
41 2oyc_A PLP phosphatase, pyrido 32.7 64 0.0022 31.7 6.3 55 553-607 21-80 (306)
42 2qr3_A Two-component system re 31.9 95 0.0033 25.6 6.6 58 552-611 47-108 (140)
43 3hdg_A Uncharacterized protein 31.5 41 0.0014 28.0 4.1 72 552-628 51-124 (137)
44 3cnb_A DNA-binding response re 31.2 86 0.0029 26.0 6.2 58 552-612 54-113 (143)
45 3heb_A Response regulator rece 30.7 1.1E+02 0.0038 25.8 7.0 78 551-631 58-137 (152)
46 2wfb_A Putative uncharacterize 30.5 92 0.0032 25.9 6.1 50 576-628 58-109 (120)
47 2i33_A Acid phosphatase; HAD s 30.5 35 0.0012 33.2 3.8 57 550-607 56-144 (258)
48 2nu8_B SCS-beta, succinyl-COA 30.3 1.9E+02 0.0066 29.7 9.6 86 526-630 294-385 (388)
49 3to5_A CHEY homolog; alpha(5)b 29.5 1.2E+02 0.0039 26.0 6.6 58 552-612 57-116 (134)
50 3kc2_A Uncharacterized protein 28.5 38 0.0013 34.6 3.8 66 552-619 12-83 (352)
51 2gmw_A D,D-heptose 1,7-bisphos 27.6 41 0.0014 31.1 3.7 56 552-607 24-105 (211)
52 3gl9_A Response regulator; bet 27.2 1E+02 0.0035 25.0 5.8 58 552-612 46-105 (122)
53 3ij5_A 3-deoxy-D-manno-octulos 27.0 1.4E+02 0.0049 27.6 7.4 73 552-630 48-136 (211)
54 1zjj_A Hypothetical protein PH 26.8 65 0.0022 30.7 5.1 71 554-626 2-77 (263)
55 1y80_A Predicted cobalamin bin 26.7 1.9E+02 0.0066 26.5 8.2 67 552-630 139-209 (210)
56 3cg0_A Response regulator rece 26.5 2.2E+02 0.0074 23.2 8.0 55 552-611 54-110 (140)
57 3m6m_D Sensory/regulatory prot 26.1 2.6E+02 0.0088 23.2 8.5 58 552-612 58-119 (143)
58 3n1u_A Hydrolase, HAD superfam 26.0 41 0.0014 30.7 3.2 75 552-630 18-106 (191)
59 3cz5_A Two-component response 24.9 1.3E+02 0.0045 25.3 6.3 56 552-612 51-108 (153)
60 3eul_A Possible nitrate/nitrit 24.9 93 0.0032 26.3 5.3 74 552-633 61-136 (152)
61 3luf_A Two-component system re 24.5 2E+02 0.0067 27.3 8.1 82 552-636 169-252 (259)
62 4e7p_A Response regulator; DNA 24.5 70 0.0024 27.1 4.4 74 551-632 65-140 (150)
63 2hx1_A Predicted sugar phospha 24.1 68 0.0023 30.9 4.7 72 552-625 13-90 (284)
64 1eo1_A Hypothetical protein MT 23.9 1.2E+02 0.0042 25.3 5.7 50 576-628 56-106 (124)
65 3hzh_A Chemotaxis response reg 23.8 1E+02 0.0034 26.4 5.3 55 552-611 83-139 (157)
66 2yx6_A Hypothetical protein PH 23.0 1.4E+02 0.0047 24.9 5.8 50 576-628 54-104 (121)
67 3lte_A Response regulator; str 22.6 1.6E+02 0.0054 23.9 6.2 58 552-612 50-108 (132)
68 1tf7_A KAIC; homohexamer, hexa 22.6 71 0.0024 34.4 4.8 41 552-594 371-416 (525)
69 1vjr_A 4-nitrophenylphosphatas 22.5 46 0.0016 31.8 3.0 57 551-607 15-76 (271)
70 3l8h_A Putative haloacid dehal 22.4 1.3E+02 0.0046 26.2 6.0 57 554-610 2-87 (179)
71 1rdu_A Conserved hypothetical 22.3 77 0.0026 26.2 4.0 51 576-629 53-104 (116)
72 3t6k_A Response regulator rece 22.0 3.2E+02 0.011 22.2 9.2 58 552-612 48-107 (136)
73 1bts_A BAND 3 anion transport 21.9 40 0.0014 20.4 1.4 19 104-122 6-24 (26)
74 1tmy_A CHEY protein, TMY; chem 21.4 2E+02 0.0067 22.7 6.5 55 552-611 47-103 (120)
75 3cfy_A Putative LUXO repressor 20.9 1E+02 0.0034 25.7 4.6 70 552-626 48-119 (137)
76 2ehv_A Hypothetical protein PH 20.9 91 0.0031 29.1 4.7 41 552-593 135-180 (251)
77 3eod_A Protein HNR; response r 20.4 1.2E+02 0.004 24.7 4.9 56 551-611 50-107 (130)
78 2re2_A Uncharacterized protein 20.4 1.5E+02 0.0053 25.3 5.7 49 576-628 70-119 (136)
79 1o13_A Probable NIFB protein; 20.2 1.3E+02 0.0044 25.9 5.1 50 576-628 67-117 (136)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=100.00 E-value=2.8e-33 Score=301.44 Aligned_cols=372 Identities=13% Similarity=0.072 Sum_probs=278.0
Q ss_pred hhcccchhHHHHHHHhhhccccccCCCCChhhhhhhhhhHHHHHHhhhhhHHHHHHHhCCCcchhhHhhhhhhhhhhhcc
Q 006373 40 QFKNQSASRKLLLGLQYFVPILEWAPRYTFEFFKSDLLAGITIASLAVPQGISYANLANLPPILGLYSSFVPPLVYAMMG 119 (648)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~p~~~wl~~y~~~~l~~Di~aGltv~~~~iPq~~aya~laglpp~~gl~~~~~~~li~~~~G 119 (648)
..++.|.++.....+||++.|+ .+++.+|..+ |+||..+++++.++++++++++
T Consensus 8 ~~~~~~~~~~i~~GlQh~lam~--------------------~~~v~~Plil------Gl~~~~~l~~agi~Tllq~~~~ 61 (429)
T 3qe7_A 8 VSERPPLLQTIPLSLQHLFAMF--------------------GATVLVPVLF------HINPATVLLFNGIGTLLYLFIC 61 (429)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHH--------------------HHHHHHHHTT------TSCHHHHHHHHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHHHHHHH--------------------HHHHHhHHHh------CCCHHHHHHHHHHHHHHHHHHc
Confidence 3344466777888999999998 8888999887 8999999999999999999984
Q ss_pred -CCCccccchhhHHHHHHHHhhhcccCCCCChhHHHHHHHHHHHHHHHHHHHHHhh--hhh--hHHhhchHhHHHHHHhh
Q 006373 120 -SSKDLAVGTVAVGSLLISSMLGKEVNPNENPKLYVQLALTATFFAGVFQASLGFL--RLG--FVVDFLSHATIVGFMGG 194 (648)
Q Consensus 120 -ss~~~~~Gp~a~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Gi~~~llg~~--~lg--~l~~~lp~~Vi~Gf~~g 194 (648)
++.+...|++......+..+.. ++ ++.+.+.++++|++++++|++ |+| ++.|++|+.|++.+++.
T Consensus 62 ~~~lP~~~G~sfafi~~~~~i~~-~g---------~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~PpvviG~~i~~ 131 (429)
T 3qe7_A 62 KGKIPAYLGSSFAFISPVLLLLP-LG---------YEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAV 131 (429)
T ss_dssp TTCCCCCEEECGGGHHHHHHHGG-GC---------HHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHHHHHHHHHH
T ss_pred CCCCCeEecChHHHHHHHHHHHh-cC---------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCeeeHHHHHH
Confidence 5556668986554332233333 33 678899999999999999998 775 99999999999999999
Q ss_pred hHHHHHHhhhhhhhCcccccCCCchHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHhhhhcccccchhhccchhHHHHH
Q 006373 195 AATVVCLQQLKGILGLVRFTHATDLQSVMRSVFSQTSQWRWESGVLGCCFLLFLLLTRYFSKKKATFFWINAMAPLTSVI 274 (648)
Q Consensus 195 igl~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~l~~~~~~~~~~~~~~~~p~~~~Li~vv 274 (648)
+|+.+...++++..|... . . +..++.++.++++++++++++.++.|++.|. ++.|++++
T Consensus 132 IGl~l~~~~~~~~~~~~~-~--~-------------~~~~~~~~~la~~tl~iii~~~~~~kg~~~~-----~aiLigiv 190 (429)
T 3qe7_A 132 IGLELAGVAAGMAGLLPA-E--G-------------QTPDSKTIIISITTLAVTVLGSVLFRGFLAI-----IPILIGVL 190 (429)
T ss_dssp HHHHHHHHHHHHHTSSCB-T--T-------------BCCCHHHHHHHHHHHHHHHHHHHSSSTTTTT-----HHHHHHHH
T ss_pred HHHHHHHHHHHhccccCC-C--C-------------ccccHHHHHHHHHHHHHHHHHHHHhcccchh-----hHHHHHHH
Confidence 999999999987543211 0 0 1256678899999999888887666665543 27899999
Q ss_pred HHHHHHHhccccCCCeEEeecCC-CCCCCCCCCcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC----cccC
Q 006373 275 LGSVLVYFTDAERHGVQVIGQLK-KGLNPPSLSELDFGSPYLMTAVKTGVIIGVIALAEGIAVGRSFAMFKN----YHID 349 (648)
Q Consensus 275 i~t~i~~~~~~~~~~~~~~g~ip-~g~p~p~~p~~~~~~~~~~~~~~~~~~~aiv~~~~~~~~~~~~~~~~~----~~~~ 349 (648)
+++++++.++..+ .+.+++.| -++|.+..|++ ++..+..+ +.++++++.|+++..++.++..+ ++.+
T Consensus 191 vg~~~a~~~G~~d--~~~v~~a~~~~lP~~~~P~f--~~~~i~~i----~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~ 262 (429)
T 3qe7_A 191 VGYALSFAMGIVD--TTPIINAHWFALPTLYTPRF--EWFAILTI----LPAALVVIAEHVGHLVVTANIVKKDLLRDPG 262 (429)
T ss_dssp HHHHHHHHHHHTT--SSHHHHSCSSCCCCCCCCCC--CHHHHHHH----THHHHHHHHHHHHHHHHHHHHHTSCTCCCCC
T ss_pred HHHHHHHHhcCCC--cccccccccccccCCCCCcc--cHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 9999999987532 22223333 24665666654 44444444 44566666677666666555444 4557
Q ss_pred CchHHHHHhhhhhhhhhcCCcccccccchhhHhhhcCCCchhHHHHHHHHHHHHHHH--hhhhhhhchhHHHHHHHHHHH
Q 006373 350 GNKEMVAFGMMNIAGSCTSCYLTAGPFSRSAVNFNAGCKTAVSNIVMATAVMITLLF--LTPLFHYTPLVVLSSIIIAAM 427 (648)
Q Consensus 350 ~n~el~a~GiaNi~~slfg~~p~~~s~srs~~~~~~G~~t~la~i~~a~i~ll~~l~--l~~ll~~iP~~vLa~ili~~~ 427 (648)
.|||+.++|++|+++|+||++|++++..|+++...+|++||++.+++|++++++.++ ++++++.||.+++||+.++ .
T Consensus 263 ~~r~l~adGla~i~~glfGg~p~Tt~~en~g~i~~tg~~sr~~~~~ag~~lillgl~pk~~al~~~IP~~vlgg~~l~-l 341 (429)
T 3qe7_A 263 LHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLL-L 341 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCEEECHHHHHHHHHHTBCCHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHHH-H
T ss_pred cchHHHHHHHHHHHHHhcCCCCcchHHHhHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH-H
Confidence 899999999999999999999999999999999999999999999999999888765 7889999999999998766 9
Q ss_pred hhccCHHHHHHH--hccCccc-hhHHhhhhhhhhhcc---------chhhHHHHHHHHHHHH
Q 006373 428 LGLIDYEAVIHL--WKLDKFD-FIVCMSAYVGVVFGS---------VEIGLVIAVTISLLRV 477 (648)
Q Consensus 428 ~~li~~~~~~~l--~~~~~~d-~~i~~~t~~~~~~~~---------~~~Gl~~Gv~~sl~~~ 477 (648)
++++...+++.+ .|++..+ ....++++...+.+| ...|+..|...++++.
T Consensus 342 fg~i~~~Gi~~l~~~~v~~~~~rn~~i~~~~l~~G~g~~~~~~~~~~~~gi~~~~~~ai~ln 403 (429)
T 3qe7_A 342 YGVIGASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAKVNIGAAELKGMALATIVGIGLS 403 (429)
T ss_dssp HHHHHHHHHHHHHHTTSCTTSHHHHHHHHHHHHHHHHCCCCCSSSCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHhhhhhccCcHHHHHHHHHHHH
Confidence 999999999988 7787654 344444433322222 2346666666666544
No 2
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=99.90 E-value=4.5e-24 Score=196.43 Aligned_cols=139 Identities=29% Similarity=0.542 Sum_probs=123.0
Q ss_pred ccceeEeeeccCCcccccCCCCCCcccCCcEEEEEecCceEEechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecC
Q 006373 483 RPRTFVLGNIPNSVTYRSIDQYPVAKSVPGVLILHIDAPIYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSS 562 (648)
Q Consensus 483 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~ivrl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~ 562 (648)
||++.++|++++++.|+++++|++.++.+++.+++++|+|+|+|+++|++++.+.++... ..+.+.+||||++
T Consensus 1 rP~~~~Lg~~~~t~~~~~~~~~~~~~~~~~v~v~~~~G~L~f~~a~~~~~~l~~~~~~~~-------~~~~~~vvlDls~ 73 (143)
T 3llo_A 1 SPSYTVLGQLPDTDVYIDIDAYEEVKEIPGIKIFQINAPIYYANSDLYSSALKRKTGVNG-------SENIHTVILDFTQ 73 (143)
T ss_dssp CCSEEEEEECTTSSCEEETTTSTTCBCCTTEEEEEECSCHHHHHHHHHHHC------------------CCSEEEEECTT
T ss_pred CCcEEEEEcCCCCCccccHHHCCCCccCCCeEEEEeCCCeEechHHHHHHHHHHHHccCC-------CCCceEEEEECCC
Confidence 699999999999999999999999999999999999999999999999999988764310 1257899999999
Q ss_pred CCccchHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHhCCCccccC-CcceecCHHHHHHHHHH
Q 006373 563 VGSIDTSGISMFEEIKKVVDRRGLKLLLANPRSEVIKKLNNSKFIENIG-QEWIYLTVAEAVAACNF 628 (648)
Q Consensus 563 v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~~~~v~~~l~~~g~~~~~~-~~~if~s~~~Av~~~~~ 628 (648)
|++||+||+++|.++.++++++|++++++++++++++.|+++|+.+.++ ++++|+|++||++++++
T Consensus 74 v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~~if~s~~~Al~~~~~ 140 (143)
T 3llo_A 74 VNFMDSVGVKTLAGIVKEYGDVGIYVYLAGCSAQVVNDLTSNRFFENPALKELLFHSIHDAVLGSQV 140 (143)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTTTCEEEEESCCHHHHHHHHHTTTTSSGGGGGGEESSHHHHHHHTSS
T ss_pred CccccHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCCeeccCccceEECcHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999887 78999999999999764
No 3
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=99.87 E-value=3.3e-22 Score=180.79 Aligned_cols=128 Identities=21% Similarity=0.330 Sum_probs=119.5
Q ss_pred CCcccccCCCCCCcccCCcEEEEEecCceEEechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHH
Q 006373 494 NSVTYRSIDQYPVAKSVPGVLILHIDAPIYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISM 573 (648)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~v~ivrl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~ 573 (648)
+|+.|+|+++|++.+..+++.+++++|+|+|+|+++|++++.+. . .+.+.+||||++|++||+||+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~v~~~~G~L~f~~a~~~~~~l~~~-~-----------~~~~~vvlDls~v~~iDssgl~~ 69 (130)
T 4dgh_A 2 NAEMSYELAQHGRSTLPRELAVYALEGPFFFAAAETFERVMGSI-Q-----------ETPQILILRLKWVPFMDITGIQT 69 (130)
T ss_dssp CHHHHHHHHHTTCSSCCTTEEEEECCSSCCHHHHHHHHHHHHHS-S-----------SCCSEEEEECTTCCCCCHHHHHH
T ss_pred chhhhhhHhhccccCCCCCEEEEEEeeeEeehhHHHHHHHHHHh-c-----------cCCCEEEEECCCCCcccHHHHHH
Confidence 67899999999999999999999999999999999999987642 1 24689999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEcCCHHHHHHHHhCCCccccCCcceecCHHHHHHHHHHhhhcC
Q 006373 574 FEEIKKVVDRRGLKLLLANPRSEVIKKLNNSKFIENIGQEWIYLTVAEAVAACNFMLHTC 633 (648)
Q Consensus 574 L~~l~~~~~~~gi~l~l~~~~~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~~~~l~~~ 633 (648)
|.++.++++++|++++++++++++++.|+++|+.+.++++++|+|++||+++|++++..+
T Consensus 70 L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~i~~s~~~Al~~~~~~~~~~ 129 (130)
T 4dgh_A 70 LEEMIQSFHKRGIKVLISGANSRVSQKLVKAGIVKLVGEQNVYPVFEGALSAALTEIEAQ 129 (130)
T ss_dssp HHHHHHHHHTTTCEEEEECCCHHHHHHHHHTTHHHHHCGGGEESSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCChhhcCcccccCCHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999999999988765
No 4
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=99.85 E-value=9.7e-22 Score=178.89 Aligned_cols=130 Identities=28% Similarity=0.415 Sum_probs=111.9
Q ss_pred eccCCcccccCCCCCCcccCC-cEEEEEecCceEEechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchH
Q 006373 491 NIPNSVTYRSIDQYPVAKSVP-GVLILHIDAPIYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTS 569 (648)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~-~v~ivrl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDss 569 (648)
++|+++.|+++++| +.++.| ++.+++++|+|+|+|+++|++++.+. . ++.+.+|+||++|++||+|
T Consensus 2 ~i~gt~~~~~~~~~-~~~~~~~~i~v~~l~G~L~f~~a~~~~~~l~~~-~-----------~~~~~vvlDls~v~~iDss 68 (135)
T 4dgf_A 2 NADGLEGMDDPDAT-SKKVVPLGVEIYEINGPFFFGVADRLKGVLDVI-E-----------ETPKVFILRMRRVPVIDAT 68 (135)
T ss_dssp --------CCTTCG-GGSCCCTTEEEEECCSSBSHHHHHHHTTGGGGC-S-----------SCCSEEEEECTTCSCBCHH
T ss_pred CCCCCCcccchhhh-ccccCCCCEEEEEeeceEEehhHHHHHHHHHHh-c-----------CCCcEEEEEcCCCCccCHH
Confidence 57899999999999 677777 99999999999999999999987642 1 3578999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHhCCCccccCCcceecCHHHHHHHHHHhhhcC
Q 006373 570 GISMFEEIKKVVDRRGLKLLLANPRSEVIKKLNNSKFIENIGQEWIYLTVAEAVAACNFMLHTC 633 (648)
Q Consensus 570 gl~~L~~l~~~~~~~gi~l~l~~~~~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~~~~l~~~ 633 (648)
|+.+|.++.++++++|++++++++++++++.|+++|+.+.++++++|+|++||++++++.+...
T Consensus 69 gl~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~i~~t~~~Al~~~~~~~~~~ 132 (135)
T 4dgf_A 69 GMHALWEFQESCEKRGTILLLSGVSDRLYGALNRFGFIEALGEERVFDHIDKALAYAKLLVETA 132 (135)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEESCCHHHHHHHHHHTHHHHHCGGGBCSSHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCChhhcCccceeCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999999877543
No 5
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=99.83 E-value=4.4e-21 Score=173.37 Aligned_cols=126 Identities=27% Similarity=0.539 Sum_probs=114.1
Q ss_pred cccCCCCCCcccCCcEEEEEecCceEEechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHHHHHH
Q 006373 498 YRSIDQYPVAKSVPGVLILHIDAPIYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEI 577 (648)
Q Consensus 498 ~~~~~~~~~~~~~~~v~ivrl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~L~~l 577 (648)
|++++++|++++.+++.+++++|+|+|+|+++|++++.+.+++. .++.+.|||||++|++||+||+++|.++
T Consensus 1 ~~~~~~~~~~~~~~~v~v~~l~G~L~f~~a~~~~~~l~~~~~~~--------~~~~~~vvlDls~v~~iDssgl~~L~~~ 72 (130)
T 2kln_A 1 MHDIDDYPQAKRVPGLVVYRYDAPLCFANAEDFRRRALTVVDQD--------PGQVEWFVLNAESNVEVDLTALDALDQL 72 (130)
T ss_dssp CCSSSCCCCCCCSSSEEEEECCSCCBTTTHHHHHHHHHHHTTSS--------SSCCEEEEEECSCCSSSBCSTTTHHHHH
T ss_pred CCChhhCcCcccCCCEEEEEECCceEechHHHHHHHHHHHHhcC--------CCCceEEEEECCCCChhhHHHHHHHHHH
Confidence 68889999999999999999999999999999999998754321 0147899999999999999999999999
Q ss_pred HHHHHHcCCEEEEEcCCHHHHHHHHhCCCccccCCcceecCHHHHHHHHHHhhh
Q 006373 578 KKVVDRRGLKLLLANPRSEVIKKLNNSKFIENIGQEWIYLTVAEAVAACNFMLH 631 (648)
Q Consensus 578 ~~~~~~~gi~l~l~~~~~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~~~~l~ 631 (648)
.++++++|++++++++++++++.|+++|+.+.++++++|+|++||+++++.+.+
T Consensus 73 ~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~i~~t~~~Al~~~~~~~~ 126 (130)
T 2kln_A 73 RTELLRRGIVFAMARVKQDLRESLRAASLLDKIGEDHIFMTLPTAVQAFRRRHH 126 (130)
T ss_dssp HHHHHTTTEEEEEECCSSHHHHHHHHCTTHHHHCTTEEESCHHHHHHHHTTC--
T ss_pred HHHHHHCCCEEEEEcCCHHHHHHHHHcCChhhcCcceeECCHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999987544
No 6
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=99.74 E-value=2e-18 Score=152.93 Aligned_cols=104 Identities=22% Similarity=0.346 Sum_probs=95.9
Q ss_pred cCCcEEEEEecCceEEechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEE
Q 006373 509 SVPGVLILHIDAPIYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKL 588 (648)
Q Consensus 509 ~~~~v~ivrl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l 588 (648)
..+++.++|++|+|+|+|+++|++++.+.. ++.+.+|+||++|++||+||+++|.++.+++++ |+++
T Consensus 14 ~~~~v~v~~l~G~L~f~~a~~l~~~l~~~~------------~~~~~vilDl~~v~~iDssgl~~L~~~~~~~~~-g~~l 80 (118)
T 3ny7_A 14 VPDDVLVLRVIGPLFFAAAEGLFTDLESRL------------EGKRIVILKWDAVPVLDAGGLDAFQRFVKRLPE-GCEL 80 (118)
T ss_dssp CCTTEEEEEEESCBCHHHHHHHHHHHHTTC------------TTCSEEEEEEEECCCBCHHHHHHHHHHHHHCCT-TCEE
T ss_pred CCCCEEEEEEeceeEehhHHHHHHHHHHhc------------CCCcEEEEEcCCCCeecHHHHHHHHHHHHHHHC-CCEE
Confidence 346899999999999999999999987532 246899999999999999999999999999999 9999
Q ss_pred EEEcCCHHHHHHHHhCCCccccCCcceecCHHHHHHH
Q 006373 589 LLANPRSEVIKKLNNSKFIENIGQEWIYLTVAEAVAA 625 (648)
Q Consensus 589 ~l~~~~~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~ 625 (648)
+++++++++++.|+++|+.+.++++++|+|++||+++
T Consensus 81 ~l~~~~~~v~~~l~~~gl~~~~~~~~i~~s~~~Al~~ 117 (118)
T 3ny7_A 81 RVCNVEFQPLRTMARAGIQPIPGRLAFFPNRRAAMAD 117 (118)
T ss_dssp EEECCCHHHHHHHHHTTCCCBTTTEEEESSHHHHTTT
T ss_pred EEecCCHHHHHHHHHcCChhhcChhhhcCCHHHHHhh
Confidence 9999999999999999999999999999999999864
No 7
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=99.61 E-value=7.5e-16 Score=137.84 Aligned_cols=106 Identities=25% Similarity=0.346 Sum_probs=96.0
Q ss_pred cccCCcEEEEEecCceEEechHHHHHHHHH-HHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHHHHHHHHHHHHcC
Q 006373 507 AKSVPGVLILHIDAPIYFANASYLRERISR-WIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRG 585 (648)
Q Consensus 507 ~~~~~~v~ivrl~g~L~F~na~~~~~~l~~-~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~g 585 (648)
.+..+++.+++++|+|+|.|+++|++.+.+ .+++ ..+.+|+||++|++||+||+.+|.++.++++++|
T Consensus 16 ~~~~~~~~vv~l~G~Ld~~~a~~l~~~l~~~~~~~-----------~~~~vvlDls~V~~iDSsGl~~L~~~~~~~~~~g 84 (125)
T 2ka5_A 16 YKIVDDVVILMPNKELNIENAHLFKKWVFDEFLNK-----------GYNKIFLVLSDVESIDSFSLGVIVNILKSISSSG 84 (125)
T ss_dssp EEECSSCEEECCCSCCSGGGTHHHHHHHHHHTTTT-----------TCCEEEEECTTCSCCCHHHHHHHHHHHHHHHHHT
T ss_pred ceeeCCEEEEEEecEEecccHHHHHHHHHHHHhhC-----------CCCEEEEECCCCCEEcHHHHHHHHHHHHHHHHcC
Confidence 345678999999999999999999999887 4432 3678999999999999999999999999999999
Q ss_pred CEEEEEcCCHHHHHHHHhCCCccccCCcceecCHHHHHHHH
Q 006373 586 LKLLLANPRSEVIKKLNNSKFIENIGQEWIYLTVAEAVAAC 626 (648)
Q Consensus 586 i~l~l~~~~~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~ 626 (648)
+++.++++++++++.|+++|+.+.+ .+|+|.+||++++
T Consensus 85 ~~l~l~~~~~~v~~~l~~~gl~~~~---~i~~s~~~Al~~~ 122 (125)
T 2ka5_A 85 GFFALVSPNEKVERVLSLTNLDRIV---KIYDTISEAMEEV 122 (125)
T ss_dssp CEEEEECCCHHHHHHHHHTTSTTTS---EEESSHHHHHTTT
T ss_pred CEEEEEeCCHHHHHHHHHcCCCceE---EecCCHHHHHHHh
Confidence 9999999999999999999998887 5999999999765
No 8
>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A
Probab=99.58 E-value=3.8e-15 Score=131.55 Aligned_cols=108 Identities=15% Similarity=0.230 Sum_probs=95.7
Q ss_pred CCcEEEEEecCceEEechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEE
Q 006373 510 VPGVLILHIDAPIYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLL 589 (648)
Q Consensus 510 ~~~v~ivrl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~ 589 (648)
.+++.+++++|+++|.|+++|++.+.+.+++. +.+.+++|+++++++|++|+..|.++.++++++|+++.
T Consensus 9 ~~~~~vl~l~G~l~~~~~~~l~~~l~~~~~~~----------~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~ 78 (117)
T 1h4x_A 9 TRETVVIRLFGELDHHAVEQIRAKISTAIFQG----------AVTTIIWNFERLSFMDSSGVGLVLGRMRELEAVAGRTI 78 (117)
T ss_dssp ETTEEEEEEEEEECHHHHHHHHHHHHHHHHHT----------SCSEEEEEEEEEEEECTHHHHHHHHHHHHHHTTTCEEE
T ss_pred eCCEEEEEEEeEEchhhHHHHHHHHHHHHhcC----------CCCEEEEECCCCcEechHHHHHHHHHHHHHHHcCCEEE
Confidence 45789999999999999999999998866431 36789999999999999999999999999999999999
Q ss_pred EEcCCHHHHHHHHhCCCccccCCcceecCHHHHHHHHHHhhh
Q 006373 590 LANPRSEVIKKLNNSKFIENIGQEWIYLTVAEAVAACNFMLH 631 (648)
Q Consensus 590 l~~~~~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~~~~l~ 631 (648)
++++++++++.|+.+|+.+.+ +|+|.+||+++++++.+
T Consensus 79 l~~~~~~v~~~l~~~gl~~~~----i~~~~~~Al~~~~~~~~ 116 (117)
T 1h4x_A 79 LLNPSPTMRKVFQFSGLGPWM----MDATEEEAIDRVRGIVN 116 (117)
T ss_dssp EESCCHHHHHHHHHTTCGGGE----ECSCHHHHHHHTC----
T ss_pred EEeCCHHHHHHHHHhCCceEE----EeCCHHHHHHHHHHhhc
Confidence 999999999999999998876 89999999998877643
No 9
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=99.57 E-value=2.8e-15 Score=132.05 Aligned_cols=105 Identities=17% Similarity=0.263 Sum_probs=95.8
Q ss_pred CCcEEEEEecCceEEechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEE
Q 006373 510 VPGVLILHIDAPIYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLL 589 (648)
Q Consensus 510 ~~~v~ivrl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~ 589 (648)
.+++.+++++|+++|.|++.|++.+.+.+++ .+.+.+++|+++++++|++|+..|.++.++++++|+++.
T Consensus 10 ~~~~~vv~l~G~l~~~~~~~l~~~l~~~~~~----------~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~ 79 (116)
T 1th8_B 10 KQDVLIVRLSGELDHHTAEELREQVTDVLEN----------RAIRHIVLNLGQLTFMDSSGLGVILGRYKQIKNVGGQMV 79 (116)
T ss_dssp ETTEEEEEEEEEESHHHHHHHHHHHHHHHHS----------SCCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCCEE
T ss_pred ECCEEEEEEeeeeccccHHHHHHHHHHHHhc----------CCCcEEEEECCCCcEEccHHHHHHHHHHHHHHHhCCeEE
Confidence 4578999999999999999999998876542 136789999999999999999999999999999999999
Q ss_pred EEcCCHHHHHHHHhCCCccccCCcceecCHHHHHHHHH
Q 006373 590 LANPRSEVIKKLNNSKFIENIGQEWIYLTVAEAVAACN 627 (648)
Q Consensus 590 l~~~~~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~~ 627 (648)
++++++++++.|+++|+.+.+ .+|+|++||+++++
T Consensus 80 l~~~~~~v~~~l~~~gl~~~~---~i~~~~~~Al~~~~ 114 (116)
T 1th8_B 80 VCAVSPAVKRLFDMSGLFKII---RVEADEQFALQALG 114 (116)
T ss_dssp EESCCHHHHHHHHHHTGGGTS---EEESSHHHHHHHTT
T ss_pred EEeCCHHHHHHHHHhCCceeE---EEeCCHHHHHHhcc
Confidence 999999999999999998877 69999999998875
No 10
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}
Probab=99.56 E-value=3.6e-15 Score=132.64 Aligned_cols=105 Identities=15% Similarity=0.077 Sum_probs=95.1
Q ss_pred cCCcEEEEEecCce---EEechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHHHHHHHHHHHH-c
Q 006373 509 SVPGVLILHIDAPI---YFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEIKKVVDR-R 584 (648)
Q Consensus 509 ~~~~v~ivrl~g~L---~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~-~ 584 (648)
+.+++.+++++|++ +|.|+++|++++.+.+.+ .+.+.+|+|+++|++||++|+.+|.++.+++++ +
T Consensus 11 ~~~~~~vv~l~G~l~~ld~~~~~~l~~~l~~~l~~----------~~~~~vvlDls~v~~iDSsGl~~L~~~~~~~~~~~ 80 (121)
T 3t6o_A 11 HEAQVTVISFPAVFQRLRETEVEQIASTFLAAMQG----------AQPRKVLIDLEGVEFFGSSFIELLVRGWKRIKEDQ 80 (121)
T ss_dssp EETTEEEEECCGGGSEECHHHHHHHHHHHHHTTCC----------SSSCEEEEECTTCCEECHHHHHHHHHHHHHHTTST
T ss_pred EECCEEEEEEccccccCchhhHHHHHHHHHHHHhh----------cCCCeEEEECCCCCEEcHHHHHHHHHHHHHHHHhc
Confidence 45689999999998 899999999998764421 247899999999999999999999999999999 9
Q ss_pred CCEEEEEcCCHHHHHHHHhCCCccccCCcceecCHHHHHHHH
Q 006373 585 GLKLLLANPRSEVIKKLNNSKFIENIGQEWIYLTVAEAVAAC 626 (648)
Q Consensus 585 gi~l~l~~~~~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~ 626 (648)
|+++.++++++++++.|+.+|+.+.+ .+|+|++||++..
T Consensus 81 g~~l~l~~~~~~v~~~l~~~gl~~~~---~i~~~~~~Al~~~ 119 (121)
T 3t6o_A 81 QGVFALCSVSPYCVEVLQVTHIDEVW---PRYSTKQEALLAM 119 (121)
T ss_dssp TCEEEEESCCHHHHHHHTTCSGGGGS---CEESSHHHHHHHT
T ss_pred CCEEEEEeCCHHHHHHHHHhCcccee---cccCCHHHHHHHh
Confidence 99999999999999999999999988 4999999999875
No 11
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=99.53 E-value=2.6e-14 Score=124.48 Aligned_cols=100 Identities=24% Similarity=0.320 Sum_probs=91.1
Q ss_pred CCcEEEEEecCceEEechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEE
Q 006373 510 VPGVLILHIDAPIYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLL 589 (648)
Q Consensus 510 ~~~v~ivrl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~ 589 (648)
.+++.+++++|+++|.|+++|++.+.+.+.+. +.+.+++|+++++++|++|+..|.++.++++++|+++.
T Consensus 11 ~~~~~vv~l~G~l~~~~~~~l~~~l~~~~~~~----------~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~ 80 (110)
T 1sbo_A 11 QDDKAIVRVQGDIDAYNSSELKEQLRNFISTT----------SKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKEFI 80 (110)
T ss_dssp CSSEEEEEEESCBSTTTTTHHHHHHHTHHHHC----------SCSEEEEECTTCCCBCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred eCCEEEEEEeeEEccccHHHHHHHHHHHHhcC----------CCcEEEEECCCCcEEccHHHHHHHHHHHHHHHcCCEEE
Confidence 46789999999999999999999998765432 34789999999999999999999999999999999999
Q ss_pred EEcCCHHHHHHHHhCCCccccCCcceecCHHHH
Q 006373 590 LANPRSEVIKKLNNSKFIENIGQEWIYLTVAEA 622 (648)
Q Consensus 590 l~~~~~~v~~~l~~~g~~~~~~~~~if~s~~~A 622 (648)
++++++++++.|+.+|+.+.++ +|+|++||
T Consensus 81 l~~~~~~v~~~l~~~gl~~~~~---i~~~~~~A 110 (110)
T 1sbo_A 81 LSSLKESISRILKLTHLDKIFK---ITDTVEEA 110 (110)
T ss_dssp EESCCHHHHHHHHHTTCGGGSC---BCSSGGGC
T ss_pred EEeCCHHHHHHHHHhCccceee---ccCCcccC
Confidence 9999999999999999998884 89999886
No 12
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=99.53 E-value=1e-14 Score=128.87 Aligned_cols=103 Identities=13% Similarity=0.191 Sum_probs=93.8
Q ss_pred CCcEEEEEecCceEEechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEE
Q 006373 510 VPGVLILHIDAPIYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLL 589 (648)
Q Consensus 510 ~~~v~ivrl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~ 589 (648)
.+++.+++++|+++|.|++.|++.+.+.+++ .. .+|+||++|++||++|+.+|.++.++++++|+++.
T Consensus 11 ~~~~~v~~l~G~ld~~~~~~l~~~l~~~~~~-----------~~-~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~ 78 (117)
T 4hyl_A 11 EQGIDIITLHGHLDTRSSPAVQAAVLPRVTA-----------KG-KMILDLREVSYMSSAGLRVLLSLYRHTSNQQGALV 78 (117)
T ss_dssp ETTEEEEEEEEEECSSSHHHHHHHHGGGCCT-----------TC-EEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCEEE
T ss_pred ECCEEEEEEEeEEcchhHHHHHHHHHHHHcc-----------CC-eEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCEEE
Confidence 4678999999999999999999998764432 12 89999999999999999999999999999999999
Q ss_pred EEcCCHHHHHHHHhCCCccccCCcceecCHHHHHHHHH
Q 006373 590 LANPRSEVIKKLNNSKFIENIGQEWIYLTVAEAVAACN 627 (648)
Q Consensus 590 l~~~~~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~~ 627 (648)
++++++++++.|+.+|+.+.+ .+|+|++||+++..
T Consensus 79 l~~~~~~v~~~l~~~gl~~~~---~i~~~~~~Al~~~~ 113 (117)
T 4hyl_A 79 LVGVSEEIRDTMEITGFWNFF---TACASMDEALRILG 113 (117)
T ss_dssp EECCCHHHHHHHHHHTCGGGC---EEESCHHHHHHHHC
T ss_pred EEeCCHHHHHHHHHhCcccee---eecCCHHHHHHHhc
Confidence 999999999999999999888 59999999998864
No 13
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Probab=99.46 E-value=1.3e-14 Score=123.99 Aligned_cols=84 Identities=12% Similarity=0.185 Sum_probs=72.2
Q ss_pred CcEEEEEecCceEEechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEE
Q 006373 511 PGVLILHIDAPIYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLL 590 (648)
Q Consensus 511 ~~v~ivrl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l 590 (648)
+++.+++++|+|+|+|+++|++++.. . ++.+.+|+||+++++||+||+++|.++.++++++|+++.+
T Consensus 15 g~~~v~~l~G~L~f~~a~~~~~~l~~----~---------~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l 81 (99)
T 3oiz_A 15 GRERIYRVEGQLFYASVEDFMAAFDF----R---------EALDRVVIDVSRAHIWDISSVQALDMAVLKFRREGAEVRI 81 (99)
T ss_dssp SSEEEEEEEEEECGGGHHHHHHTCCT----T---------SCCSEEEEEEEEEEECSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCEEEEEEeeEEehhhHHHHHHHHhh----c---------CCCCEEEEECCCCCccCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 35899999999999999999998752 1 3578999999999999999999999999999999999999
Q ss_pred EcCCHHHHHHHHhCCCc
Q 006373 591 ANPRSEVIKKLNNSKFI 607 (648)
Q Consensus 591 ~~~~~~v~~~l~~~g~~ 607 (648)
+++++++++.|+++|+.
T Consensus 82 ~~~~~~v~~~l~~~g~~ 98 (99)
T 3oiz_A 82 VGMNEASETMVDRLAIH 98 (99)
T ss_dssp ESHHHHHTTCC------
T ss_pred EcCCHHHHHHHHHhcCC
Confidence 99999999999999974
No 14
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*
Probab=99.40 E-value=1.4e-12 Score=115.88 Aligned_cols=109 Identities=13% Similarity=0.180 Sum_probs=96.8
Q ss_pred CcEEEEEecCceEEechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEE
Q 006373 511 PGVLILHIDAPIYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLL 590 (648)
Q Consensus 511 ~~v~ivrl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l 590 (648)
.++.++++.|.++..+++++++++.+.+.+ .+.+++|+|+++|+++|+++++.|.++.+.++..|.++++
T Consensus 11 ~~vlvv~l~G~lD~~~a~~l~~~ll~~i~~----------~~~~~vIlDlsgV~~iDs~g~~~L~~~~~~~~l~G~~~~l 80 (123)
T 3zxn_A 11 DDYWVVAIEETLHDQSVIQFKEELLHNITG----------VAGKGLVIDISALEVVDEFVTRVLIEISRLAELLGLPFVL 80 (123)
T ss_dssp TTEEEEECCCCC-CHHHHHHHHHHHHHHTS----------SCCSEEEEECTTCSSCCHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred CCEEEEEEeEeeCHHHHHHHHHHHHHHHHh----------cCCCEEEEEcCCCCcccHHHHHHHHHHHHHHHHCCCEEEE
Confidence 358999999999999999999999876643 3578999999999999999999999999999999999999
Q ss_pred EcCCHHHHHHHHhCCCc-cccCCcceecCHHHHHHHHHHhhhc
Q 006373 591 ANPRSEVIKKLNNSKFI-ENIGQEWIYLTVAEAVAACNFMLHT 632 (648)
Q Consensus 591 ~~~~~~v~~~l~~~g~~-~~~~~~~if~s~~~Av~~~~~~l~~ 632 (648)
+|.+|++.+.|...|+. +.+ .+|.|+++|++.++.....
T Consensus 81 ~Gi~p~va~~l~~~G~~l~~i---~~~~~l~~Al~~l~~~~~~ 120 (123)
T 3zxn_A 81 TGIKPAVAITLTEMGLDLRGM---ATALNLQKGLDKLKNLARM 120 (123)
T ss_dssp ECCCHHHHHHHHHTTCCSTTS---EEESSHHHHHHHHHHHHTC
T ss_pred EcCCHHHHHHHHHhCCCccce---EEECCHHHHHHHHHHhhhh
Confidence 99999999999999995 444 6999999999998765443
No 15
>3agd_A Salt-tolerant glutaminase; glutaminase super family, hydrolase; 2.20A {Micrococcus luteus} PDB: 3age_A* 3if5_A 3ih8_A 3ih9_A 3iha_A* 3ihb_A 2dfw_A
Probab=95.75 E-value=0.018 Score=60.23 Aligned_cols=84 Identities=17% Similarity=0.340 Sum_probs=66.9
Q ss_pred CcEEEEEecCceEEechHHHHHHHHHHH-------------------HHHHHH----------------h---hhcCCCC
Q 006373 511 PGVLILHIDAPIYFANASYLRERISRWI-------------------YEEEEK----------------L---KISGETG 552 (648)
Q Consensus 511 ~~v~ivrl~g~L~F~na~~~~~~l~~~i-------------------~~~~~~----------------~---~~~~~~~ 552 (648)
+++.+++++|.+.|+.+|++.+++.+.. +...++ . .+....+
T Consensus 324 ~~~~~~~l~g~~~f~~ae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (456)
T 3agd_A 324 GDRVFLHLQGVIRFGGAEAVLDALTDLRTGAEKPGTGWDAAVYPRWQEAAADRAALSAATGGGAVHEAAAAAARDENDGP 403 (456)
T ss_dssp TTEEEEEEEEEESHHHHHHHHHHHHHTCCC-------CCTTTCHHHHHHHHSHHHHHHHHCCTTTHHHHHHHC---CCCC
T ss_pred CcEEEEEeeceechhHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccCCC
Confidence 4689999999999999999988887751 000000 0 0112456
Q ss_pred ceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcCC
Q 006373 553 LQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANPR 594 (648)
Q Consensus 553 ~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~~ 594 (648)
.+.||||+++|+.+|-.|..++.+..++++..|.++.+..+.
T Consensus 404 ~~~vv~d~~~v~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~ 445 (456)
T 3agd_A 404 IRTVVLNLARVDRIDDVGRRLIAEGVRRLQADGVRVEVEDPE 445 (456)
T ss_dssp CCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred CcEEEEEeeecccccHHHHHHHHHHHHHHHhCCCEEEEECcc
Confidence 789999999999999999999999999999999999999776
No 16
>3bl4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 2.20A {Arthrobacter SP}
Probab=85.11 E-value=0.54 Score=40.76 Aligned_cols=101 Identities=14% Similarity=0.130 Sum_probs=66.1
Q ss_pred CcEEEEEecC--ceEEechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEE
Q 006373 511 PGVLILHIDA--PIYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKL 588 (648)
Q Consensus 511 ~~v~ivrl~g--~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l 588 (648)
+||..+++.+ ++.-..+..+.+++.+. .. .+...+++|++....++..+-+.+.+-. .=-.+
T Consensus 19 dGIl~~~~~~~~~i~~e~A~~~~~~~~~l-~~----------~~~~~vL~D~r~~~~~s~~AR~~~~~~~-----~~~a~ 82 (124)
T 3bl4_A 19 DGILRLTWPRGAAITAADAERAMLRVNQL-CG----------DDRHPMLVDMATTADVSRGARAVFGRPC-----QASRI 82 (124)
T ss_dssp TSCEEEECSSSSCCCHHHHHHHHHHHHHH-HT----------TCCEEEEEECCSSTHHHHHHHHHHCCCC-----CEEEE
T ss_pred CCEEEEEEcCCCccCHHHHHHHHHHHHHH-hC----------CCceEEEEEcccccCCCHHHHHHHhCcc-----ceeEE
Confidence 6899999998 56666776666666552 21 2468999999999889998877776622 11245
Q ss_pred EEEcCCHHHHHHHHh--CCCccccCCcceecCHHHHHHHHHH
Q 006373 589 LLANPRSEVIKKLNN--SKFIENIGQEWIYLTVAEAVAACNF 628 (648)
Q Consensus 589 ~l~~~~~~v~~~l~~--~g~~~~~~~~~if~s~~~Av~~~~~ 628 (648)
.+.+.++-.+ .+.+ .++...-.+.++|.|.+||++|..+
T Consensus 83 Al~g~s~~~r-~ia~~~l~~~~~~~pt~fF~te~eA~aWL~~ 123 (124)
T 3bl4_A 83 ALLGSSPVDR-VLANFFLGINAVPCPTKFFTSERDALTWLAL 123 (124)
T ss_dssp EEECSSGGGH-HHHHHHHHHHCCSSCEEEESCHHHHHHHHTC
T ss_pred EEEcCCHHHH-HHHHHHHHhcCCCCCceeeCCHHHHHHHHHh
Confidence 6666665322 1111 1222222234899999999999753
No 17
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=81.82 E-value=2.1 Score=45.49 Aligned_cols=16 Identities=13% Similarity=0.445 Sum_probs=7.6
Q ss_pred cchhhHHHHHHHHHHH
Q 006373 461 SVEIGLVIAVTISLLR 476 (648)
Q Consensus 461 ~~~~Gl~~Gv~~sl~~ 476 (648)
|+..|-++|+.+.++.
T Consensus 391 gi~~~~~~ai~ln~~l 406 (429)
T 3qe7_A 391 GMALATIVGIGLSLIF 406 (429)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHh
Confidence 4444444455554444
No 18
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=70.26 E-value=6 Score=34.12 Aligned_cols=105 Identities=6% Similarity=0.026 Sum_probs=62.8
Q ss_pred CcEEEEEecCceEEechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHHHHHHH--HHHHHcCCEE
Q 006373 511 PGVLILHIDAPIYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEIK--KVVDRRGLKL 588 (648)
Q Consensus 511 ~~v~ivrl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~L~~l~--~~~~~~gi~l 588 (648)
+++..+++.|.+.=..-+.+...+.+.+++. + .+--.+.+|++.....+..++ ..++. ....++=-++
T Consensus 19 ~~vl~v~~~G~lt~~d~~~l~~~l~~~l~~~-------~-~~~i~ll~~~~~f~G~~~~a~--~~d~k~~~~h~~~~~Ri 88 (126)
T 2q3l_A 19 DFYLAFKAVGKLTHEDYEQMTPLLESALAGI-------K-TPEIVALIDITELDGLSLHAA--WDDLKLGLKHGKEFKRV 88 (126)
T ss_dssp EEEEEEEEEEEECHHHHHHHHHHHHHHTTTC-------C-SSCEEEEEEEEEEEEECHHHH--HHHHHHHHHHGGGEEEE
T ss_pred CCEEEEEEEeeECHHHHHHHHHHHHHHHHhC-------C-CceEEEEEEecCCCCCCHHHH--HHHHHhhhhHHhcCCEE
Confidence 4688999999996555544555444433322 1 111457779988888885553 33332 2222333478
Q ss_pred EEEcCCHHHHHHHHhCCCccccCCcceecCHHHHHHHH
Q 006373 589 LLANPRSEVIKKLNNSKFIENIGQEWIYLTVAEAVAAC 626 (648)
Q Consensus 589 ~l~~~~~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~ 626 (648)
.+++-+.=++...+..+.+-. ++.+.|.+.++|.+|.
T Consensus 89 AvV~d~~W~~~~~~~~~~~~~-~evk~F~~~~~A~~Wl 125 (126)
T 2q3l_A 89 AIIGQGELQEWATRVANWFTP-GEFKFFEDKRDALDWL 125 (126)
T ss_dssp EEECCSHHHHHHHHHHHHHCS-SEEEEESCHHHHHHHH
T ss_pred EEEcChHHHHHHHHHHhhccC-CceeccCCHHHHHHHh
Confidence 888776655555554444321 2458889999999886
No 19
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0
Probab=62.23 E-value=22 Score=34.08 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=42.4
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEE-----cCCHHHHHHHHhCCCc
Q 006373 552 GLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLA-----NPRSEVIKKLNNSKFI 607 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~-----~~~~~v~~~l~~~g~~ 607 (648)
+.|.+++|+.++-.=+......-.+..++++++|++++++ .....+.+.++..|+.
T Consensus 5 ~~kli~~DlDGTLl~~~~~~~~~~~ai~~l~~~Gi~v~laTgrs~r~~~~~~~~l~~lg~~ 65 (266)
T 3pdw_A 5 TYKGYLIDLDGTMYNGTEKIEEACEFVRTLKDRGVPYLFVTNNSSRTPKQVADKLVSFDIP 65 (266)
T ss_dssp CCSEEEEECSSSTTCHHHHHHHHHHHHHHHHHTTCCEEEEESCCSSCHHHHHHHHHHTTCC
T ss_pred cCCEEEEeCcCceEeCCEeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 3789999999985433333344567788899999999999 3446688889998884
No 20
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=55.99 E-value=32 Score=36.56 Aligned_cols=88 Identities=9% Similarity=0.012 Sum_probs=55.8
Q ss_pred echHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCc--c--chHHHHHHHHHHHHHHHcCCEEEEEcC----CHH
Q 006373 525 ANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGS--I--DTSGISMFEEIKKVVDRRGLKLLLANP----RSE 596 (648)
Q Consensus 525 ~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~--I--Dssgl~~L~~l~~~~~~~gi~l~l~~~----~~~ 596 (648)
++.+.+++.++..+++ ++++.+++++..-.+ + |..+ +.+.+..++.+ .+..++.+.. .++
T Consensus 351 a~~~~~~~al~~~l~d----------p~vd~vlv~~~~~~~Gg~~~~~~a-~~i~~al~~~~-~~kPvvv~~~~g~~~~~ 418 (457)
T 2csu_A 351 ARGEDYYRTAKLLLQD----------PNVDMLIAICVVPTFAGMTLTEHA-EGIIRAVKEVN-NEKPVLAMFMAGYVSEK 418 (457)
T ss_dssp CCHHHHHHHHHHHHHS----------TTCSEEEEEEECCCSTTCCSSHHH-HHHHHHHHHHC-CCCCEEEEEECTTTTHH
T ss_pred CCHHHHHHHHHHHhcC----------CCCCEEEEEccccccccCCchhHH-HHHHHHHHHhc-CCCCEEEEeCCCcchHH
Confidence 5677787777766553 357888888753222 3 2222 33444444443 5666655432 356
Q ss_pred HHHHHHhCCCccccCCcceecCHHHHHHHHHHhhh
Q 006373 597 VIKKLNNSKFIENIGQEWIYLTVAEAVAACNFMLH 631 (648)
Q Consensus 597 v~~~l~~~g~~~~~~~~~if~s~~~Av~~~~~~l~ 631 (648)
.++.|+.+|+ .+|++.++|++++.....
T Consensus 419 ~~~~L~~~Gi-------p~~~spe~Av~al~~l~~ 446 (457)
T 2csu_A 419 AKELLEKNGI-------PTYERPEDVASAAYALVE 446 (457)
T ss_dssp HHHHHHTTTC-------CEESSHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC-------CccCCHHHHHHHHHHHHH
Confidence 7888988886 489999999998876554
No 21
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima}
Probab=53.40 E-value=20 Score=33.31 Aligned_cols=62 Identities=8% Similarity=0.081 Sum_probs=43.4
Q ss_pred cCCCccchHHHHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHh--------CCC------ccccCCcceecCHHHHHHH
Q 006373 561 SSVGSIDTSGISMFEEIKKVVDRRGL-KLLLANPRSEVIKKLNN--------SKF------IENIGQEWIYLTVAEAVAA 625 (648)
Q Consensus 561 s~v~~IDssgl~~L~~l~~~~~~~gi-~l~l~~~~~~v~~~l~~--------~g~------~~~~~~~~if~s~~~Av~~ 625 (648)
+.++.+| +.++.+.++..|+ +++++++.+..++.-++ .|- .|.+...++++|++||++.
T Consensus 24 t~vtn~d------ihdiARamkt~Gl~~l~LV~P~~~~~~~a~~~~~~w~~~~Ga~~np~r~d~L~~a~vv~sL~eAl~~ 97 (192)
T 3dcm_X 24 TAVTNLD------VHDIARTARTYNLKGYYIVTNLRAQQDMVSKMLKFWREGFGSRYNPSRAESLKLVKLKSYLEDVLED 97 (192)
T ss_dssp CCCCHHH------HHHHHHHHHHTTCSEEEEECCCHHHHHHHHHHHHHHHTSGGGGTCSSSHHHHTTEEEESSHHHHHHH
T ss_pred eeccccc------HHHHHHHHHhcCCceEEEECCccccHHHHHHHHHhhhcccCcccCcCHHHHhccCeEECCHHHHHHH
Confidence 4566665 4557888888885 89999988754432222 232 3445556899999999999
Q ss_pred HHH
Q 006373 626 CNF 628 (648)
Q Consensus 626 ~~~ 628 (648)
|++
T Consensus 98 ~~~ 100 (192)
T 3dcm_X 98 IES 100 (192)
T ss_dssp HHH
T ss_pred HHh
Confidence 994
No 22
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=53.07 E-value=17 Score=30.47 Aligned_cols=58 Identities=7% Similarity=0.079 Sum_probs=40.2
Q ss_pred ceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcC--CHHHHHHHHhCCCcccc
Q 006373 553 LQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANP--RSEVIKKLNNSKFIENI 610 (648)
Q Consensus 553 ~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~--~~~v~~~l~~~g~~~~~ 610 (648)
.|.+++|+.++-.=+.....-..++.++++++|+++.++.- ...+.+.+++.|+.+.+
T Consensus 2 ~k~i~~D~DgtL~~~~~~~~~~~~~l~~L~~~G~~~~i~S~~~~~~~~~~l~~~~l~~~f 61 (137)
T 2pr7_A 2 MRGLIVDYAGVLDGTDEDQRRWRNLLAAAKKNGVGTVILSNDPGGLGAAPIRELETNGVV 61 (137)
T ss_dssp CCEEEECSTTTTSSCHHHHHHHHHHHHHHHHTTCEEEEEECSCCGGGGHHHHHHHHTTSS
T ss_pred CcEEEEeccceecCCCccCccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHCChHhhc
Confidence 47899999986633344555678888999999999987644 34456666666654444
No 23
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=52.50 E-value=32 Score=30.78 Aligned_cols=75 Identities=7% Similarity=0.110 Sum_probs=49.4
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHHcC---CEEEEEcCCHH-HHHHHHhCCCccccCCcceecCHHHHHHHHH
Q 006373 552 GLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRG---LKLLLANPRSE-VIKKLNNSKFIENIGQEWIYLTVAEAVAACN 627 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~g---i~l~l~~~~~~-v~~~l~~~g~~~~~~~~~if~s~~~Av~~~~ 627 (648)
+++.|.+-+...+ -+..+.++.+++++.| +.+++-|...+ -.+.+++.|....++.+ .+.++|+++++
T Consensus 69 ~~diV~lS~~~~~-----~~~~~~~~i~~L~~~g~~~i~v~vGG~~~~~~~~~l~~~G~d~v~~~~---~~~~~~~~~~~ 140 (161)
T 2yxb_A 69 DVDVIGVSILNGA-----HLHLMKRLMAKLRELGADDIPVVLGGTIPIPDLEPLRSLGIREIFLPG---TSLGEIIEKVR 140 (161)
T ss_dssp TCSEEEEEESSSC-----HHHHHHHHHHHHHHTTCTTSCEEEEECCCHHHHHHHHHTTCCEEECTT---CCHHHHHHHHH
T ss_pred CCCEEEEEeechh-----hHHHHHHHHHHHHhcCCCCCEEEEeCCCchhcHHHHHHCCCcEEECCC---CCHHHHHHHHH
Confidence 5778888766543 4566777888887764 77888776432 34457788875333221 14678999998
Q ss_pred HhhhcCC
Q 006373 628 FMLHTCK 634 (648)
Q Consensus 628 ~~l~~~~ 634 (648)
+.+..+.
T Consensus 141 ~~~~~~~ 147 (161)
T 2yxb_A 141 KLAEEKR 147 (161)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 8877653
No 24
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=49.91 E-value=29 Score=29.78 Aligned_cols=70 Identities=14% Similarity=0.167 Sum_probs=41.3
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcC--CHHHHHHHHhCC-CccccCCcceecCHHHHHHHH
Q 006373 552 GLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANP--RSEVIKKLNNSK-FIENIGQEWIYLTVAEAVAAC 626 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~--~~~v~~~l~~~g-~~~~~~~~~if~s~~~Av~~~ 626 (648)
++..+++|..- . |..|.+.+.++.+. ..++.+++... ..+......+.| ..+.+.+-.-...+.++++.+
T Consensus 58 ~~dlvi~D~~l-~--~~~g~~~~~~l~~~--~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~ 130 (153)
T 3hv2_A 58 EVDLVISAAHL-P--QMDGPTLLARIHQQ--YPSTTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQA 130 (153)
T ss_dssp CCSEEEEESCC-S--SSCHHHHHHHHHHH--CTTSEEEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-C--cCcHHHHHHHHHhH--CCCCeEEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHH
Confidence 57899999863 3 45677777777663 34667766544 344444555566 777665432233344444443
No 25
>3nvb_A Uncharacterized protein; protein FKBH, protein fkbhstructural genomics, PSI-2, protei structure initiative; 1.71A {Bacteroides fragilis} PDB: 3slr_A
Probab=45.02 E-value=1.2e+02 Score=31.45 Aligned_cols=53 Identities=17% Similarity=0.239 Sum_probs=38.9
Q ss_pred CCceEEEEEecCCCcc-----c-------------hHHHHHHHHHHHHHHHcCCEEEEEcC--CHHHHHHHHh
Q 006373 551 TGLQYVILDMSSVGSI-----D-------------TSGISMFEEIKKVVDRRGLKLLLANP--RSEVIKKLNN 603 (648)
Q Consensus 551 ~~~~~vILD~s~v~~I-----D-------------ssgl~~L~~l~~~~~~~gi~l~l~~~--~~~v~~~l~~ 603 (648)
.++|.+|+|+.++-.= | ...-..+.++.++++++|+++.++.- ++.+++.+++
T Consensus 220 ~~iK~lv~DvDnTL~~G~l~~dG~~~~~~~dg~g~g~~ypgv~e~L~~Lk~~Gi~laI~Snn~~~~v~~~l~~ 292 (387)
T 3nvb_A 220 KFKKCLILDLDNTIWGGVVGDDGWENIQVGHGLGIGKAFTEFQEWVKKLKNRGIIIAVCSKNNEGKAKEPFER 292 (387)
T ss_dssp CCCCEEEECCBTTTBBSCHHHHCGGGSBCSSSSSTHHHHHHHHHHHHHHHHTTCEEEEEEESCHHHHHHHHHH
T ss_pred CCCcEEEEcCCCCCCCCeecCCCceeEEeccCccccccCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHhh
Confidence 5799999999886422 1 12234578889999999999998854 4567788876
No 26
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=44.24 E-value=58 Score=27.57 Aligned_cols=80 Identities=14% Similarity=0.336 Sum_probs=53.8
Q ss_pred cEEEEEecCceEEechHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCC-ccchHHHHHHHHHHHHHHHcCCEEE-
Q 006373 512 GVLILHIDAPIYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVG-SIDTSGISMFEEIKKVVDRRGLKLL- 589 (648)
Q Consensus 512 ~v~ivrl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~-~IDssgl~~L~~l~~~~~~~gi~l~- 589 (648)
+..++++.. .+.+.+++++.+.++...+ -=+-..||||++.+. .+| |.++.+.++++|..++
T Consensus 16 ~l~vl~l~~----~d~~~l~~~L~~ki~~aP~------FF~~aPVVlDl~~l~~~~d------l~~L~~~l~~~gl~~vG 79 (120)
T 3ghf_A 16 TLSVVHLHE----AEPEVIRQALEDKIAQAPA------FLKHAPVVINVSGLESPVN------WPELHKIVTSTGLRIIG 79 (120)
T ss_dssp CCEEEEEES----CCHHHHHHHHHHHHHHSHH------HHTTCEEEEEEEECCSSCC------HHHHHHHHHTTTCEEEE
T ss_pred eEEEEEeCC----CCHHHHHHHHHHHHHhChH------hhCCCcEEEEccccCChHH------HHHHHHHHHHcCCEEEE
Confidence 345555533 4567778888776665421 002467999999885 344 6678888999999885
Q ss_pred EEcCCHH-HHHHHHhCCCc
Q 006373 590 LANPRSE-VIKKLNNSKFI 607 (648)
Q Consensus 590 l~~~~~~-v~~~l~~~g~~ 607 (648)
+.+++++ .++..+..|+-
T Consensus 80 V~g~~~~~~~~~a~~~GLp 98 (120)
T 3ghf_A 80 VSGCKDASLKVEIDRMGLP 98 (120)
T ss_dssp EESCCCHHHHHHHHHHTCC
T ss_pred EeCCCcHHHHHHHHHCCCC
Confidence 4555644 88888888884
No 27
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=43.68 E-value=86 Score=32.53 Aligned_cols=87 Identities=7% Similarity=0.058 Sum_probs=54.5
Q ss_pred chHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEe-cCCCccchHHHHHHHHHHHHHHHcCCE--EEEEcCCHH-HHHHH
Q 006373 526 NASYLRERISRWIYEEEEKLKISGETGLQYVILDM-SSVGSIDTSGISMFEEIKKVVDRRGLK--LLLANPRSE-VIKKL 601 (648)
Q Consensus 526 na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~-s~v~~IDssgl~~L~~l~~~~~~~gi~--l~l~~~~~~-v~~~l 601 (648)
+.+++++.++-.+++ ++++.++++. .++..-|.-+ +.+.+..++++ .++. +.+.+.+.+ -++.|
T Consensus 301 ~~e~~~~al~~il~d----------~~v~~ilvni~ggi~~~d~vA-~gii~a~~~~~-~~~Pivvrl~G~n~~~g~~~L 368 (395)
T 2fp4_B 301 KESQVYQAFKLLTAD----------PKVEAILVNIFGGIVNCAIIA-NGITKACRELE-LKVPLVVRLEGTNVHEAQNIL 368 (395)
T ss_dssp CHHHHHHHHHHHHHC----------TTCCEEEEEEEESSSCHHHHH-HHHHHHHHHHT-CCSCEEEEEEETTHHHHHHHH
T ss_pred CHHHHHHHHHHHhCC----------CCCCEEEEEecCCccCcHHHH-HHHHHHHHhcC-CCCeEEEEcCCCCHHHHHHHH
Confidence 456666555544332 4678777765 6777767766 55555555552 3444 445666654 77889
Q ss_pred HhCCCccccCCcceecCHHHHHHHHHHh
Q 006373 602 NNSKFIENIGQEWIYLTVAEAVAACNFM 629 (648)
Q Consensus 602 ~~~g~~~~~~~~~if~s~~~Av~~~~~~ 629 (648)
+.+|+ .. ..++|.+||.+.+-..
T Consensus 369 ~~~gl-~~----~~~~~~~~Aa~~~v~~ 391 (395)
T 2fp4_B 369 TNSGL-PI----TSAVDLEDAAKKAVAS 391 (395)
T ss_dssp HHTCS-CC----EECSSHHHHHHHHHHT
T ss_pred HHCCC-ce----EeCCCHHHHHHHHHHH
Confidence 88885 11 2449999999987654
No 28
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=42.72 E-value=32 Score=29.14 Aligned_cols=79 Identities=14% Similarity=0.192 Sum_probs=42.6
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcC--CHHHHHHHHhCCCccccCCcceecCHHHHHHHHHHh
Q 006373 552 GLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANP--RSEVIKKLNNSKFIENIGQEWIYLTVAEAVAACNFM 629 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~--~~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~~~~ 629 (648)
++..+++|..- . |..|.+.+.++.+.-...++.+++... ..+......+.|..+.+.+..-...+.++++.+...
T Consensus 52 ~~dlii~d~~l-~--~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~ 128 (147)
T 2zay_A 52 HPHLIITEANM-P--KISGMDLFNSLKKNPQTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKL 128 (147)
T ss_dssp CCSEEEEESCC-S--SSCHHHHHHHHHTSTTTTTSCEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCC-C--CCCHHHHHHHHHcCcccCCCCEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 47899999863 3 345666666666532334566655433 444555556678877664432223344455444443
Q ss_pred hhcC
Q 006373 630 LHTC 633 (648)
Q Consensus 630 l~~~ 633 (648)
...+
T Consensus 129 ~~~~ 132 (147)
T 2zay_A 129 LYED 132 (147)
T ss_dssp HC--
T ss_pred HHhc
Confidence 3333
No 29
>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0
Probab=41.78 E-value=39 Score=32.29 Aligned_cols=56 Identities=18% Similarity=0.168 Sum_probs=40.4
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcC-----CHHHHHHHHhCCCc
Q 006373 552 GLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANP-----RSEVIKKLNNSKFI 607 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~-----~~~v~~~l~~~g~~ 607 (648)
+.|.+++|+.++-.=+-.-...-.+..++++++|++++++.- ...+.+.++..|+.
T Consensus 7 ~~kli~~DlDGTLl~~~~~~~~~~~ai~~l~~~Gi~v~l~Tgr~~r~~~~~~~~l~~lg~~ 67 (268)
T 3qgm_A 7 DKKGYIIDIDGVIGKSVTPIPEGVEGVKKLKELGKKIIFVSNNSTRSRRILLERLRSFGLE 67 (268)
T ss_dssp CCSEEEEECBTTTEETTEECHHHHHHHHHHHHTTCEEEEEECCSSSCHHHHHHHHHHTTCC
T ss_pred cCCEEEEcCcCcEECCCEeCcCHHHHHHHHHHcCCeEEEEeCcCCCCHHHHHHHHHHCCCC
Confidence 378999999988553322223345677888899999999833 45678889988884
No 30
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=40.86 E-value=53 Score=27.54 Aligned_cols=72 Identities=17% Similarity=0.184 Sum_probs=43.1
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcC--CHHHHHHHHhCCCccccCCcceecCHHHHHHHHHH
Q 006373 552 GLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANP--RSEVIKKLNNSKFIENIGQEWIYLTVAEAVAACNF 628 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~--~~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~~~ 628 (648)
++..+++|..- . |..|.+.+.++.+.. .++.+++... +.+......+.|..+.+.+..-...+.++++.+.+
T Consensus 49 ~~dlvi~d~~l-~--~~~g~~~~~~l~~~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 122 (143)
T 3jte_A 49 SIDVVITDMKM-P--KLSGMDILREIKKIT--PHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAIN 122 (143)
T ss_dssp TCCEEEEESCC-S--SSCHHHHHHHHHHHC--TTCEEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-C--CCcHHHHHHHHHHhC--CCCeEEEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHH
Confidence 57899999873 3 456777777776643 4566665543 34455666678887766543223334445544433
No 31
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=40.07 E-value=52 Score=27.46 Aligned_cols=58 Identities=10% Similarity=0.205 Sum_probs=38.4
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHH---HHHhCCCccccCC
Q 006373 552 GLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANPRSEVIK---KLNNSKFIENIGQ 612 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~~~~v~~---~l~~~g~~~~~~~ 612 (648)
++..|++|..- . |..|.+.+.++.+.....++.+++.....+... ...+.|..+.+.+
T Consensus 50 ~~dlvi~d~~l-~--~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~k 110 (140)
T 3grc_A 50 PYAAMTVDLNL-P--DQDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWLEK 110 (140)
T ss_dssp CCSEEEECSCC-S--SSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECS
T ss_pred CCCEEEEeCCC-C--CCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeC
Confidence 57899999863 3 455777777777655557888888876654433 3345677666644
No 32
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}
Probab=39.53 E-value=27 Score=32.30 Aligned_cols=75 Identities=12% Similarity=0.088 Sum_probs=49.8
Q ss_pred CceEEEEEecCCC-----ccchHHHHHHHHH-------HHHHHHcCCEEEEEcC--CHHHHHHHHhCCCccccCCcceec
Q 006373 552 GLQYVILDMSSVG-----SIDTSGISMFEEI-------KKVVDRRGLKLLLANP--RSEVIKKLNNSKFIENIGQEWIYL 617 (648)
Q Consensus 552 ~~~~vILD~s~v~-----~IDssgl~~L~~l-------~~~~~~~gi~l~l~~~--~~~v~~~l~~~g~~~~~~~~~if~ 617 (648)
..+.|++|+.++- +++..+ ..+.++ .+.++++|+++.++.- .+.+++.+++.|+.+.+.. ..
T Consensus 24 ~ik~vifD~DGtL~d~~~~~~~~~-~~~~~~~~~d~~~l~~L~~~G~~~~ivT~~~~~~~~~~l~~lgi~~~~~~---~k 99 (195)
T 3n07_A 24 QIKLLICDVDGVFSDGLIYMGNQG-EELKTFHTRDGYGVKALMNAGIEIAIITGRRSQIVENRMKALGISLIYQG---QD 99 (195)
T ss_dssp TCCEEEECSTTTTSCSCCEECTTS-CEECCCCTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHTTCCEEECS---CS
T ss_pred CCCEEEEcCCCCcCCCcEEEccCc-hhhheeecccHHHHHHHHHCCCEEEEEECcCHHHHHHHHHHcCCcEEeeC---CC
Confidence 4789999998853 222221 223334 7888999999988853 5668899999998765532 14
Q ss_pred CHHHHHHHHHHhh
Q 006373 618 TVAEAVAACNFML 630 (648)
Q Consensus 618 s~~~Av~~~~~~l 630 (648)
+-.++++.+.+++
T Consensus 100 ~k~~~~~~~~~~~ 112 (195)
T 3n07_A 100 DKVQAYYDICQKL 112 (195)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHh
Confidence 4556666665554
No 33
>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A
Probab=38.40 E-value=33 Score=32.93 Aligned_cols=56 Identities=14% Similarity=0.165 Sum_probs=40.3
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEc---C--CHHHHHHHHhCCCc
Q 006373 552 GLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLAN---P--RSEVIKKLNNSKFI 607 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~---~--~~~v~~~l~~~g~~ 607 (648)
+.|.+++|+.++-.-+-..+..-.+..++++++|++++++. . ...+.+.++..|+.
T Consensus 4 ~~kli~~DlDGTLl~~~~~i~~~~eal~~l~~~G~~vvl~Tn~~gr~~~~~~~~l~~lg~~ 64 (264)
T 3epr_A 4 AYKGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVE 64 (264)
T ss_dssp CCCEEEECCBTTTEETTEECHHHHHHHHHHHHHTCCEEEEECCCSSCHHHHHHHHHTTTCC
T ss_pred CCCEEEEeCCCceEeCCEECcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHCCCC
Confidence 36899999999854333333444566778888999999987 2 34578888888874
No 34
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=36.59 E-value=44 Score=28.14 Aligned_cols=79 Identities=10% Similarity=0.066 Sum_probs=46.7
Q ss_pred CCceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEc--CCHHHHHHHHhCCCccccCCcc-eecCHHHHHHHHH
Q 006373 551 TGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLAN--PRSEVIKKLNNSKFIENIGQEW-IYLTVAEAVAACN 627 (648)
Q Consensus 551 ~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~--~~~~v~~~l~~~g~~~~~~~~~-if~s~~~Av~~~~ 627 (648)
.++..+++|..- . |..|.+.+.++.+.-...++.+++.. .+++......+.|..+.+.+.. -...+.++++.+.
T Consensus 50 ~~~dlii~D~~l-~--~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l 126 (144)
T 3kht_A 50 AKYDLIILDIGL-P--IANGFEVMSAVRKPGANQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIF 126 (144)
T ss_dssp CCCSEEEECTTC-G--GGCHHHHHHHHHSSSTTTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCC-C--CCCHHHHHHHHHhcccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHH
Confidence 357899999863 3 45677777766653333456665554 3455666667788877775433 3344555555554
Q ss_pred Hhhhc
Q 006373 628 FMLHT 632 (648)
Q Consensus 628 ~~l~~ 632 (648)
++...
T Consensus 127 ~~~~~ 131 (144)
T 3kht_A 127 SYWLT 131 (144)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 44333
No 35
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=35.83 E-value=92 Score=29.69 Aligned_cols=67 Identities=9% Similarity=0.102 Sum_probs=44.5
Q ss_pred CcEEEEEecCceEEe------------chHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCCCccchHHHHHHHHHH
Q 006373 511 PGVLILHIDAPIYFA------------NASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEIK 578 (648)
Q Consensus 511 ~~v~ivrl~g~L~F~------------na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~v~~IDssgl~~L~~l~ 578 (648)
++|.+++++|++.=. +.+++.+.+++..+ .+++|.|||+... ..-|..+.+.+.+..
T Consensus 3 ~~iavi~i~G~I~~~~~~~~~~~~~~~~~~~l~~~l~~a~~----------d~~v~~ivL~~~s-~Gg~~~~~~~i~~~l 71 (240)
T 3rst_A 3 SKIAVLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKD----------DKTVKGIVLKVNS-PGGGVYESAEIHKKL 71 (240)
T ss_dssp CEEEEEEEESCBCCC---------CCCCHHHHHHHHHHHHH----------CTTEEEEEEEEEE-CCBCHHHHHHHHHHH
T ss_pred CeEEEEEEEEEEcCCCCcCcccccCCcCHHHHHHHHHHHHh----------CCCcEEEEEEecC-CCCCHHHHHHHHHHH
Confidence 357778887777532 33555555554322 2468999998874 567888888888888
Q ss_pred HHHHH-cCCEE
Q 006373 579 KVVDR-RGLKL 588 (648)
Q Consensus 579 ~~~~~-~gi~l 588 (648)
+.+++ .+..+
T Consensus 72 ~~~~~~~~kPV 82 (240)
T 3rst_A 72 EEIKKETKKPI 82 (240)
T ss_dssp HHHHHHHCCCE
T ss_pred HHHHHhCCCeE
Confidence 87776 56554
No 36
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=35.52 E-value=32 Score=31.20 Aligned_cols=58 Identities=22% Similarity=0.196 Sum_probs=40.0
Q ss_pred ceEEEEEecCCCcc-----------c----hHHHHHHHHHHHHHHHcCCEEEEEcCC-----HHHHHHHHhCCCcccc
Q 006373 553 LQYVILDMSSVGSI-----------D----TSGISMFEEIKKVVDRRGLKLLLANPR-----SEVIKKLNNSKFIENI 610 (648)
Q Consensus 553 ~~~vILD~s~v~~I-----------D----ssgl~~L~~l~~~~~~~gi~l~l~~~~-----~~v~~~l~~~g~~~~~ 610 (648)
.+.|++|+.++-.- + ..-..-..++.++++++|+++.++.-+ ..+.+.+++.|+.+.+
T Consensus 3 ik~vifD~DgtL~~~~~~~y~~~~~~~~~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~l~~~gl~~~f 80 (189)
T 3ib6_A 3 LTHVIWDMGETLNTVPNTRYDHHPLDTYPEVVLRKNAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDYF 80 (189)
T ss_dssp CCEEEECTBTTTBCCCTTSSCSSCGGGCTTCCBCTTHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHTTCGGGE
T ss_pred ceEEEEcCCCceeeccchhhhhHHHhccCCceeCcCHHHHHHHHHHCCCEEEEEECCCccchHHHHHHHHhcCchhhe
Confidence 57888888775511 1 122234567778889999999877532 5788999999987655
No 37
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=34.49 E-value=69 Score=26.73 Aligned_cols=76 Identities=7% Similarity=0.101 Sum_probs=40.4
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEE-EEcCCHHHHHHHHhCCCccccCCcceecCHHHHHHHHHHhh
Q 006373 552 GLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLL-LANPRSEVIKKLNNSKFIENIGQEWIYLTVAEAVAACNFML 630 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~-l~~~~~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~~~~l 630 (648)
++..+++|..- . |..|.+.+.++.+. .....++ +++..+...+ ..+.|..+.+.+..-...+.++++.+....
T Consensus 55 ~~dlvi~d~~l-~--~~~g~~~~~~l~~~--~~~~~ii~~s~~~~~~~~-~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (143)
T 2qv0_A 55 KVDAIFLDINI-P--SLDGVLLAQNISQF--AHKPFIVFITAWKEHAVE-AFELEAFDYILKPYQESRIINMLQKLTTAW 128 (143)
T ss_dssp CCSEEEECSSC-S--SSCHHHHHHHHTTS--TTCCEEEEEESCCTTHHH-HHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCC-C--CCCHHHHHHHHHcc--CCCceEEEEeCCHHHHHH-HHhCCcceEEeCCCCHHHHHHHHHHHHHHH
Confidence 47899999863 3 34466666666542 2345444 4444444444 446777776644222334455555544444
Q ss_pred hcC
Q 006373 631 HTC 633 (648)
Q Consensus 631 ~~~ 633 (648)
+..
T Consensus 129 ~~~ 131 (143)
T 2qv0_A 129 EQQ 131 (143)
T ss_dssp HHC
T ss_pred Hhc
Confidence 333
No 38
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=34.04 E-value=1.5e+02 Score=24.25 Aligned_cols=57 Identities=12% Similarity=0.176 Sum_probs=33.7
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEE-cC-CHHHHHHHHhCCCccccCC
Q 006373 552 GLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLA-NP-RSEVIKKLNNSKFIENIGQ 612 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~-~~-~~~v~~~l~~~g~~~~~~~ 612 (648)
++..+++|.. ++.+| |++.++++.+... ....+++. +. +.+......+.|..+.+.+
T Consensus 52 ~~dlvllD~~-mp~~~--G~~~~~~lr~~~~-~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~K 110 (133)
T 2r25_B 52 NYNMIFMDVQ-MPKVD--GLLSTKMIRRDLG-YTSPIVALTAFADDSNIKECLESGMNGFLSK 110 (133)
T ss_dssp CCSEEEECSC-CSSSC--HHHHHHHHHHHSC-CCSCEEEEESCCSHHHHHHHHHTTCSEEEES
T ss_pred CCCEEEEeCC-CCCCC--hHHHHHHHHhhcC-CCCCEEEEECCCCHHHHHHHHHcCCCEEEeC
Confidence 4689999986 45454 6677666654322 24455544 33 3444555556788776643
No 39
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=33.36 E-value=68 Score=26.77 Aligned_cols=55 Identities=11% Similarity=0.242 Sum_probs=35.4
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcC--CHHHHHHHHhCCCccccCC
Q 006373 552 GLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANP--RSEVIKKLNNSKFIENIGQ 612 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~--~~~v~~~l~~~g~~~~~~~ 612 (648)
++..+++|. .. |..|.+.+.++.+.. .++.+++... +.+......+.|..+.+.+
T Consensus 48 ~~dlvi~d~--~~--~~~g~~~~~~l~~~~--~~~pii~ls~~~~~~~~~~~~~~g~~~~l~k 104 (142)
T 2qxy_A 48 KIDLVFVDV--FE--GEESLNLIRRIREEF--PDTKVAVLSAYVDKDLIINSVKAGAVDYILK 104 (142)
T ss_dssp CCSEEEEEC--TT--THHHHHHHHHHHHHC--TTCEEEEEESCCCHHHHHHHHHHTCSCEEES
T ss_pred CCCEEEEeC--CC--CCcHHHHHHHHHHHC--CCCCEEEEECCCCHHHHHHHHHCCcceeEeC
Confidence 578999998 44 456777777776542 3566666543 3445556666787776643
No 40
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=33.10 E-value=87 Score=26.72 Aligned_cols=59 Identities=15% Similarity=0.152 Sum_probs=36.2
Q ss_pred CCceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEc--CCHHHHHHHHhCCCccccCC
Q 006373 551 TGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLAN--PRSEVIKKLNNSKFIENIGQ 612 (648)
Q Consensus 551 ~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~--~~~~v~~~l~~~g~~~~~~~ 612 (648)
.++..+++|..- . |..|.+.+.++.+.-...++.+++.. .+++......+.|..+.+.+
T Consensus 50 ~~~dlii~D~~l-~--~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~K 110 (154)
T 3gt7_A 50 TRPDLIISDVLM-P--EMDGYALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFITK 110 (154)
T ss_dssp CCCSEEEEESCC-S--SSCHHHHHHHHHHSTTTTTSCEEEEECCCSHHHHHHHHHHCCSEEEES
T ss_pred CCCCEEEEeCCC-C--CCCHHHHHHHHHhCCCcCCCCEEEEECCCChHHHHHHHHCCCCEEEeC
Confidence 357899999863 3 34477777666554323466665544 34555556666788776643
No 41
>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A*
Probab=32.69 E-value=64 Score=31.67 Aligned_cols=55 Identities=20% Similarity=0.187 Sum_probs=39.8
Q ss_pred ceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcC-----CHHHHHHHHhCCCc
Q 006373 553 LQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANP-----RSEVIKKLNNSKFI 607 (648)
Q Consensus 553 ~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~-----~~~v~~~l~~~g~~ 607 (648)
.+.+++|+.++-.-+..-...-.+..++++++|++++++.- ...+.+.+++.|+.
T Consensus 21 ~k~i~~D~DGTL~~~~~~~~~~~~~l~~l~~~g~~~~~~Tn~~~~~~~~~~~~~~~~g~~ 80 (306)
T 2oyc_A 21 AQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVSNNSRRARPELALRFARLGFG 80 (306)
T ss_dssp CSEEEECSBTTTEETTEECTTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHHHHTTCC
T ss_pred CCEEEECCCCcEecCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 68999999987664443333445667788899999988762 24577888888874
No 42
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=31.88 E-value=95 Score=25.58 Aligned_cols=58 Identities=19% Similarity=0.227 Sum_probs=33.7
Q ss_pred CceEEEEEecCCC--ccchHHHHHHHHHHHHHHHcCCEEEEEc--CCHHHHHHHHhCCCccccC
Q 006373 552 GLQYVILDMSSVG--SIDTSGISMFEEIKKVVDRRGLKLLLAN--PRSEVIKKLNNSKFIENIG 611 (648)
Q Consensus 552 ~~~~vILD~s~v~--~IDssgl~~L~~l~~~~~~~gi~l~l~~--~~~~v~~~l~~~g~~~~~~ 611 (648)
++..+++|..--. .-|..|.+.+.++.+.. .++.+++.. .+.+......+.|..+.+.
T Consensus 47 ~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~ 108 (140)
T 2qr3_A 47 NPEVVLLDMNFTSGINNGNEGLFWLHEIKRQY--RDLPVVLFTAYADIDLAVRGIKEGASDFVV 108 (140)
T ss_dssp CEEEEEEETTTTC-----CCHHHHHHHHHHHC--TTCCEEEEEEGGGHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEEeCCcCCCCCCCccHHHHHHHHHhhC--cCCCEEEEECCCCHHHHHHHHHcCchheee
Confidence 4789999986421 01345677777776642 345554443 3344555666778877663
No 43
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=31.49 E-value=41 Score=28.01 Aligned_cols=72 Identities=11% Similarity=0.051 Sum_probs=43.5
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcC--CHHHHHHHHhCCCccccCCcceecCHHHHHHHHHH
Q 006373 552 GLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANP--RSEVIKKLNNSKFIENIGQEWIYLTVAEAVAACNF 628 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~--~~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~~~ 628 (648)
++..+++|..- . |..|.+.+.++.+.. .+..+++... +.+......+.|..+.+.+..-...+.++++.+.+
T Consensus 51 ~~dlvi~d~~l-~--~~~g~~~~~~l~~~~--~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 124 (137)
T 3hdg_A 51 APDVIITDIRM-P--KLGGLEMLDRIKAGG--AKPYVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRH 124 (137)
T ss_dssp CCSEEEECSSC-S--SSCHHHHHHHHHHTT--CCCEEEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-C--CCCHHHHHHHHHhcC--CCCcEEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHH
Confidence 47899999873 3 455777777666543 4666666543 34455566678887777554333444555554443
No 44
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=31.24 E-value=86 Score=25.96 Aligned_cols=58 Identities=14% Similarity=0.192 Sum_probs=35.8
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcC--CHHHHHHHHhCCCccccCC
Q 006373 552 GLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANP--RSEVIKKLNNSKFIENIGQ 612 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~--~~~v~~~l~~~g~~~~~~~ 612 (648)
++..+++|... . |..|.+.+.++.+.....++.+++... ..+......+.|..+.+.+
T Consensus 54 ~~dlii~d~~l-~--~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~k 113 (143)
T 3cnb_A 54 KPDVVMLDLMM-V--GMDGFSICHRIKSTPATANIIVIAMTGALTDDNVSRIVALGAETCFGK 113 (143)
T ss_dssp CCSEEEEETTC-T--TSCHHHHHHHHHTSTTTTTSEEEEEESSCCHHHHHHHHHTTCSEEEES
T ss_pred CCCEEEEeccc-C--CCcHHHHHHHHHhCccccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeC
Confidence 47899999864 3 345666666665533345677766543 3444455667888776643
No 45
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=30.69 E-value=1.1e+02 Score=25.77 Aligned_cols=78 Identities=18% Similarity=0.237 Sum_probs=47.0
Q ss_pred CCceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcC--CHHHHHHHHhCCCccccCCcceecCHHHHHHHHHH
Q 006373 551 TGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANP--RSEVIKKLNNSKFIENIGQEWIYLTVAEAVAACNF 628 (648)
Q Consensus 551 ~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~--~~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~~~ 628 (648)
.++..+++|..- . |..|.+.++++.+.-...++.+++... .++......+.|..+.+.+-.-...+.++++.+..
T Consensus 58 ~~~dliilD~~l-~--~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 134 (152)
T 3heb_A 58 GRAQLVLLDLNL-P--DMTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGL 134 (152)
T ss_dssp TCBEEEEECSBC-S--SSBHHHHHHHHHHSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCC-C--CCcHHHHHHHHHhcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 457899999863 3 455778887776643334555555433 44555666678887776543333445556655544
Q ss_pred hhh
Q 006373 629 MLH 631 (648)
Q Consensus 629 ~l~ 631 (648)
...
T Consensus 135 ~~~ 137 (152)
T 3heb_A 135 FFS 137 (152)
T ss_dssp HHT
T ss_pred HHH
Confidence 433
No 46
>2wfb_A Putative uncharacterized protein ORP; mixed molybdenum-copper sulphide cluster, alpha and beta protein, biosynthetic protein; 2.00A {Desulfovibrio gigas}
Probab=30.54 E-value=92 Score=25.93 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=37.5
Q ss_pred HHHHHHHHcCCEEEEEc-CCHHHHHHHHhCCCccccCCcceec-CHHHHHHHHHH
Q 006373 576 EIKKVVDRRGLKLLLAN-PRSEVIKKLNNSKFIENIGQEWIYL-TVAEAVAACNF 628 (648)
Q Consensus 576 ~l~~~~~~~gi~l~l~~-~~~~v~~~l~~~g~~~~~~~~~if~-s~~~Av~~~~~ 628 (648)
++.+.+.+.|+++++|+ ..+..++.|+..|+.-..+ .-. +++||++...+
T Consensus 58 ~~~~~l~~~gv~~vi~~~iG~~a~~~L~~~GI~v~~~---~~g~~i~eal~~~~~ 109 (120)
T 2wfb_A 58 NAAQVLAKSGAGVLLTGYVGPKAFQALQAAGIKVGQD---LEGLTVRQAVQRFLD 109 (120)
T ss_dssp HHHHHHHHHTEEEEECSCCCHHHHHHHHHTTCEEECC---CTTSBHHHHHHHHHT
T ss_pred HHHHHHHHCCCCEEEECCCCHhHHHHHHHCCCEEEEc---CCCCcHHHHHHHHHc
Confidence 45566777999999996 4788999999999843332 134 78999988765
No 47
>2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A
Probab=30.54 E-value=35 Score=33.16 Aligned_cols=57 Identities=18% Similarity=0.253 Sum_probs=41.8
Q ss_pred CCCceEEEEEecCCCccchHH---------------------------HHHHHHHHHHHHHcCCEEEEEcCCH-----HH
Q 006373 550 ETGLQYVILDMSSVGSIDTSG---------------------------ISMFEEIKKVVDRRGLKLLLANPRS-----EV 597 (648)
Q Consensus 550 ~~~~~~vILD~s~v~~IDssg---------------------------l~~L~~l~~~~~~~gi~l~l~~~~~-----~v 597 (648)
..+.+.+|+|+.++- +|... .....++.+.++++|+++.++.-++ .+
T Consensus 56 ~~~~kavifDlDGTL-ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~Gi~i~iaTnr~~~~~~~~ 134 (258)
T 2i33_A 56 TEKKPAIVLDLDETV-LDNSPHQAMSVKTGKGYPYKWDDWINKAEAEALPGSIDFLKYTESKGVDIYYISNRKTNQLDAT 134 (258)
T ss_dssp CSSEEEEEECSBTTT-EECHHHHHHHHHHSCCTTTTHHHHHHHCCCEECTTHHHHHHHHHHTTCEEEEEEEEEGGGHHHH
T ss_pred CCCCCEEEEeCcccC-cCCHHHHHHHHhcccchHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCEEEEEcCCchhHHHHH
Confidence 356899999999865 55531 1234567888999999999886543 46
Q ss_pred HHHHHhCCCc
Q 006373 598 IKKLNNSKFI 607 (648)
Q Consensus 598 ~~~l~~~g~~ 607 (648)
.+.|++.|+.
T Consensus 135 ~~~L~~~Gl~ 144 (258)
T 2i33_A 135 IKNLERVGAP 144 (258)
T ss_dssp HHHHHHHTCS
T ss_pred HHHHHHcCCC
Confidence 7788888885
No 48
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=30.28 E-value=1.9e+02 Score=29.73 Aligned_cols=86 Identities=13% Similarity=0.087 Sum_probs=53.0
Q ss_pred chHHHHHHHHHHHHHHHHHhhhcCCCCceEEEEE-ecCCCccchHHHHHHHHHHHHHHHcCCEE--EEEcCCH-HHHHHH
Q 006373 526 NASYLRERISRWIYEEEEKLKISGETGLQYVILD-MSSVGSIDTSGISMFEEIKKVVDRRGLKL--LLANPRS-EVIKKL 601 (648)
Q Consensus 526 na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD-~s~v~~IDssgl~~L~~l~~~~~~~gi~l--~l~~~~~-~v~~~l 601 (648)
+.+++++.++-.++ .++++.+++. |.++..-|--+ +.+.+..+++ +.++.+ .+.+.+. +-++.|
T Consensus 294 ~~~~~~~~~~~il~----------d~~v~~ilvni~ggi~~~~~vA-~gii~a~~~~-~~~~pivvrl~G~n~~~g~~~l 361 (388)
T 2nu8_B 294 TKERVTEAFKIILS----------DDKVKAVLVNIFGGIVRCDLIA-DGIIGAVAEV-GVNVPVVVRLEGNNAELGAKKL 361 (388)
T ss_dssp CHHHHHHHHHHHHT----------STTCCEEEEEEESCSSCHHHHH-HHHHHHHHHH-TCCSCEEEEEESTTHHHHHHHH
T ss_pred CHHHHHHHHHHHhc----------CCCCCEEEEEecCCcCCchHHH-HHHHHHHHhc-CCCCeEEEEeCCCCHHHHHHHH
Confidence 45566655554332 2456766665 46777777665 5555555554 244444 4566654 466888
Q ss_pred HhCCCccccCCccee--cCHHHHHHHHHHhh
Q 006373 602 NNSKFIENIGQEWIY--LTVAEAVAACNFML 630 (648)
Q Consensus 602 ~~~g~~~~~~~~~if--~s~~~Av~~~~~~l 630 (648)
+.+|+ .++ +|.++|.+.+-+..
T Consensus 362 ~~~g~-------~~~~~~~~~~aa~~~v~~~ 385 (388)
T 2nu8_B 362 ADSGL-------NIIAAKGLTDAAQQVVAAV 385 (388)
T ss_dssp HTTCS-------SEEECSSHHHHHHHHHHHT
T ss_pred HHCCC-------ceecCCCHHHHHHHHHHHh
Confidence 88885 355 99999999876543
No 49
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=29.45 E-value=1.2e+02 Score=26.02 Aligned_cols=58 Identities=17% Similarity=0.342 Sum_probs=40.8
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcC--CHHHHHHHHhCCCccccCC
Q 006373 552 GLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANP--RSEVIKKLNNSKFIENIGQ 612 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~--~~~v~~~l~~~g~~~~~~~ 612 (648)
++..|++|.. ++.+| |.+.++++.+.-+.+++.+++... .++......+.|..+++.+
T Consensus 57 ~~DlillD~~-MP~md--G~el~~~ir~~~~~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~K 116 (134)
T 3to5_A 57 DFDFVVTDWN-MPGMQ--GIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVK 116 (134)
T ss_dssp CCSEEEEESC-CSSSC--HHHHHHHHHHSTTTTTCCEEEEESSCCHHHHHHHHHTTCCEEEES
T ss_pred CCCEEEEcCC-CCCCC--HHHHHHHHHhCCCCCCCeEEEEECCCCHHHHHHHHHCCCCEEEEC
Confidence 5789999986 77776 888888887655556777666543 4455556667898887643
No 50
>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A*
Probab=28.48 E-value=38 Score=34.58 Aligned_cols=66 Identities=11% Similarity=0.035 Sum_probs=48.3
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcCC-----HHHHHHHH-hCCCccccCCcceecCH
Q 006373 552 GLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANPR-----SEVIKKLN-NSKFIENIGQEWIYLTV 619 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~~-----~~v~~~l~-~~g~~~~~~~~~if~s~ 619 (648)
+.+.+++|+.+|-+-+...+..-.+..+.++++|+++.++.-+ ++..+.|+ +.|+. +..++++.+.
T Consensus 12 ~~~~~l~D~DGvl~~g~~~~p~a~~~l~~l~~~g~~~~~vTNn~~~~~~~~~~~l~~~lgi~--~~~~~i~ts~ 83 (352)
T 3kc2_A 12 KKIAFAFDIDGVLFRGKKPIAGASDALKLLNRNKIPYILLTNGGGFSERARTEFISSKLDVD--VSPLQIIQSH 83 (352)
T ss_dssp CCEEEEECCBTTTEETTEECTTHHHHHHHHHHTTCCEEEECSCCSSCHHHHHHHHHHHHTSC--CCGGGEECTT
T ss_pred cCCEEEEECCCeeEcCCeeCcCHHHHHHHHHHCCCEEEEEeCCCCCCchHHHHHHHHhcCCC--CChhhEeehH
Confidence 4789999999998877666666677788888999999887533 45677787 57873 3445666553
No 51
>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*
Probab=27.63 E-value=41 Score=31.07 Aligned_cols=56 Identities=13% Similarity=0.142 Sum_probs=40.4
Q ss_pred CceEEEEEecCCCccch---------HHHHHHHHHHHHHHHcCCEEEEEcCC-----------------HHHHHHHHhCC
Q 006373 552 GLQYVILDMSSVGSIDT---------SGISMFEEIKKVVDRRGLKLLLANPR-----------------SEVIKKLNNSK 605 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDs---------sgl~~L~~l~~~~~~~gi~l~l~~~~-----------------~~v~~~l~~~g 605 (648)
..+.+++|+.++-.-+. .-..-..++.++++++|+++.++.-+ +.+++.+++.|
T Consensus 24 ~~k~v~~D~DGTL~~~~~~~~~~~~~~~~pg~~e~L~~L~~~G~~~~ivTn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 103 (211)
T 2gmw_A 24 SVPAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRD 103 (211)
T ss_dssp CBCEEEECSBTTTBCCCSSCCSGGGCCBCTTHHHHHHHHHHTTCEEEEEEECTHHHHTSSCHHHHHHHHHHHHHHHHHTT
T ss_pred cCCEEEEcCCCCeECCCCcccCcccCcCCcCHHHHHHHHHHCCCeEEEEECcCCcCCCccCHHHHHHHHHHHHHHHHHcC
Confidence 46789999998765543 22344667788889999999877543 35678888888
Q ss_pred Cc
Q 006373 606 FI 607 (648)
Q Consensus 606 ~~ 607 (648)
+.
T Consensus 104 l~ 105 (211)
T 2gmw_A 104 VD 105 (211)
T ss_dssp CC
T ss_pred Cc
Confidence 73
No 52
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=27.18 E-value=1e+02 Score=25.00 Aligned_cols=58 Identities=5% Similarity=0.147 Sum_probs=36.5
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcC--CHHHHHHHHhCCCccccCC
Q 006373 552 GLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANP--RSEVIKKLNNSKFIENIGQ 612 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~--~~~v~~~l~~~g~~~~~~~ 612 (648)
++..+++|.. ++.. .|.+.++++.+.-...++.+++... .++......+.|..+.+.+
T Consensus 46 ~~dlvllD~~-~p~~--~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~K 105 (122)
T 3gl9_A 46 TPDLIVLXIM-MPVM--DGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRK 105 (122)
T ss_dssp CCSEEEECSC-CSSS--CHHHHHHHHHTSTTTTTSCEEEEESCCSHHHHHHHHHTTCSEEEES
T ss_pred CCCEEEEecc-CCCC--cHHHHHHHHHhcccccCCCEEEEecCCchHHHHHHHhcChhhhccC
Confidence 5789999986 4544 4777777665543334666655443 4455556667888776643
No 53
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}
Probab=26.99 E-value=1.4e+02 Score=27.57 Aligned_cols=73 Identities=10% Similarity=-0.013 Sum_probs=49.1
Q ss_pred CceEEEEEecCCCccchH--------------HHHHHHHHHHHHHHcCCEEEEEcC--CHHHHHHHHhCCCccccCCcce
Q 006373 552 GLQYVILDMSSVGSIDTS--------------GISMFEEIKKVVDRRGLKLLLANP--RSEVIKKLNNSKFIENIGQEWI 615 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDss--------------gl~~L~~l~~~~~~~gi~l~l~~~--~~~v~~~l~~~g~~~~~~~~~i 615 (648)
..+.||+|+.++- +|+. -.+.+ +.++++++|+++.++.- .+.+++.+++.|+.+.+...
T Consensus 48 ~ik~viFDlDGTL-~Ds~~~~~~~~~~~~~~~~~d~~--~L~~L~~~G~~l~I~T~~~~~~~~~~l~~lgi~~~f~~~-- 122 (211)
T 3ij5_A 48 NIRLLICDVDGVM-SDGLIYMGNQGEELKAFNVRDGY--GIRCLITSDIDVAIITGRRAKLLEDRANTLGITHLYQGQ-- 122 (211)
T ss_dssp TCSEEEECCTTTT-SSSEEEEETTSCEEEEEEHHHHH--HHHHHHHTTCEEEEECSSCCHHHHHHHHHHTCCEEECSC--
T ss_pred CCCEEEEeCCCCE-ECCHHHHhhhhHHHHHhccchHH--HHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCchhhccc--
Confidence 4789999998862 2211 00111 67889999999988853 55788999999987666432
Q ss_pred ecCHHHHHHHHHHhh
Q 006373 616 YLTVAEAVAACNFML 630 (648)
Q Consensus 616 f~s~~~Av~~~~~~l 630 (648)
.+-.++++.+.+++
T Consensus 123 -k~K~~~l~~~~~~l 136 (211)
T 3ij5_A 123 -SDKLVAYHELLATL 136 (211)
T ss_dssp -SSHHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHHc
Confidence 44566676665554
No 54
>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii}
Probab=26.83 E-value=65 Score=30.73 Aligned_cols=71 Identities=15% Similarity=0.104 Sum_probs=42.1
Q ss_pred eEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcCC-----HHHHHHHHhCCCccccCCcceecCHHHHHHHH
Q 006373 554 QYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANPR-----SEVIKKLNNSKFIENIGQEWIYLTVAEAVAAC 626 (648)
Q Consensus 554 ~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~~-----~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~ 626 (648)
+.+++|+.++-.-+...+..-.+..++++++|+++.++.-+ .+..+.|++.|+.. ..+.++.+...+.++.
T Consensus 2 k~i~~D~DGtL~~~~~~~~~~~~~l~~l~~~g~~~~~~T~r~~~~~~~~~~~l~~lg~~~--~~~~i~~~~~~~~~~l 77 (263)
T 1zjj_A 2 VAIIFDMDGVLYRGNRAIPGVRELIEFLKERGIPFAFLTNNSTKTPEMYREKLLKMGIDV--SSSIIITSGLATRLYM 77 (263)
T ss_dssp EEEEEECBTTTEETTEECTTHHHHHHHHHHHTCCEEEEESCCSSCHHHHHHHHHTTTCCC--CGGGEEEHHHHHHHHH
T ss_pred eEEEEeCcCceEeCCEeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHCCCCC--ChhhEEecHHHHHHHH
Confidence 67899998876533211223345666678889999887543 34667777778742 2234554444444433
No 55
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=26.69 E-value=1.9e+02 Score=26.54 Aligned_cols=67 Identities=13% Similarity=0.147 Sum_probs=45.7
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHHcC----CEEEEEcCCHHHHHHHHhCCCccccCCcceecCHHHHHHHHH
Q 006373 552 GLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRG----LKLLLANPRSEVIKKLNNSKFIENIGQEWIYLTVAEAVAACN 627 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~g----i~l~l~~~~~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~~ 627 (648)
+++.|.+-+...+. ...+.++.+.++++| +++++-|...+ .+.. +.+|.+....|..+|++.|+
T Consensus 139 ~~d~v~lS~~~~~~-----~~~~~~~i~~l~~~~~~~~~~v~vGG~~~~-~~~~------~~~gad~~~~da~~av~~~~ 206 (210)
T 1y80_A 139 QPDIVGMSALLTTT-----MMNMKSTIDALIAAGLRDRVKVIVGGAPLS-QDFA------DEIGADGYAPDAASATELCR 206 (210)
T ss_dssp CCSEEEEECCSGGG-----THHHHHHHHHHHHTTCGGGCEEEEESTTCC-HHHH------HHHTCSEECSSHHHHHHHHH
T ss_pred CCCEEEEecccccc-----HHHHHHHHHHHHhcCCCCCCeEEEECCCCC-HHHH------HHcCCeEEECCHHHHHHHHH
Confidence 46788887765443 456777888887765 78888776432 2222 33456678899999999998
Q ss_pred Hhh
Q 006373 628 FML 630 (648)
Q Consensus 628 ~~l 630 (648)
+.+
T Consensus 207 ~l~ 209 (210)
T 1y80_A 207 QLL 209 (210)
T ss_dssp HHC
T ss_pred HHh
Confidence 754
No 56
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=26.46 E-value=2.2e+02 Score=23.21 Aligned_cols=55 Identities=9% Similarity=0.202 Sum_probs=34.7
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcC--CHHHHHHHHhCCCccccC
Q 006373 552 GLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANP--RSEVIKKLNNSKFIENIG 611 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~--~~~v~~~l~~~g~~~~~~ 611 (648)
++..+++|...-.. ..|.+.+.++.+. .++.+++... ..+......+.|..+.+.
T Consensus 54 ~~dlii~d~~~~~~--~~g~~~~~~l~~~---~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~ 110 (140)
T 3cg0_A 54 RPDIALVDIMLCGA--LDGVETAARLAAG---CNLPIIFITSSQDVETFQRAKRVNPFGYLA 110 (140)
T ss_dssp CCSEEEEESSCCSS--SCHHHHHHHHHHH---SCCCEEEEECCCCHHHHHHHHTTCCSEEEE
T ss_pred CCCEEEEecCCCCC--CCHHHHHHHHHhC---CCCCEEEEecCCCHHHHHHHHhcCCCEEEe
Confidence 46899999864222 4467777777665 5566555433 444555666788877664
No 57
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=26.13 E-value=2.6e+02 Score=23.19 Aligned_cols=58 Identities=14% Similarity=0.295 Sum_probs=37.0
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHH--cCCEEEEEc--CCHHHHHHHHhCCCccccCC
Q 006373 552 GLQYVILDMSSVGSIDTSGISMFEEIKKVVDR--RGLKLLLAN--PRSEVIKKLNNSKFIENIGQ 612 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~--~gi~l~l~~--~~~~v~~~l~~~g~~~~~~~ 612 (648)
++..+++|.. ++.. .|.+.+.++.+...+ +.+.+++.. ..++..+...+.|..+.+.+
T Consensus 58 ~~dlvl~D~~-mp~~--~g~~~~~~lr~~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~K 119 (143)
T 3m6m_D 58 DYDAVIVDLH-MPGM--NGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAK 119 (143)
T ss_dssp CCSEEEEESC-CSSS--CHHHHHHHHHHHHHTTCCCCCEEEEESCCCHHHHHHHHHTTCSEEEES
T ss_pred CCCEEEEeCC-CCCC--CHHHHHHHHHhchhccCCCCeEEEEeCCCCHHHHHHHHHcChhheeeC
Confidence 5789999987 4444 477777777654333 344454443 34566677778888777643
No 58
>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0
Probab=26.00 E-value=41 Score=30.69 Aligned_cols=75 Identities=16% Similarity=0.196 Sum_probs=48.6
Q ss_pred CceEEEEEecCCCc-----cchHHHHHHHHH-------HHHHHHcCCEEEEEcC--CHHHHHHHHhCCCccccCCcceec
Q 006373 552 GLQYVILDMSSVGS-----IDTSGISMFEEI-------KKVVDRRGLKLLLANP--RSEVIKKLNNSKFIENIGQEWIYL 617 (648)
Q Consensus 552 ~~~~vILD~s~v~~-----IDssgl~~L~~l-------~~~~~~~gi~l~l~~~--~~~v~~~l~~~g~~~~~~~~~if~ 617 (648)
+.+.+++|+.++-. .|..+ ..+.++ .++++++|+++.++.- .+.+.+.+++.|+.+.+.. +-
T Consensus 18 ~ik~vifD~DGtL~~~~~~~~~~~-~~~~~~~~~d~~~l~~L~~~g~~~~ivTn~~~~~~~~~l~~lgl~~~~~~--~k- 93 (191)
T 3n1u_A 18 KIKCLICDVDGVLSDGLLHIDNHG-NELKSFHVQDGMGLKLLMAAGIQVAIITTAQNAVVDHRMEQLGITHYYKG--QV- 93 (191)
T ss_dssp TCSEEEECSTTTTBCSCCEECTTC-CEECCBCHHHHHHHHHHHHTTCEEEEECSCCSHHHHHHHHHHTCCEEECS--CS-
T ss_pred cCCEEEEeCCCCCCCCceeecCCc-hhhhhccccChHHHHHHHHCCCeEEEEeCcChHHHHHHHHHcCCccceeC--CC-
Confidence 47899999988642 22211 222333 7888999999988853 4568889999998765532 22
Q ss_pred CHHHHHHHHHHhh
Q 006373 618 TVAEAVAACNFML 630 (648)
Q Consensus 618 s~~~Av~~~~~~l 630 (648)
+-.++++.+.+++
T Consensus 94 pk~~~~~~~~~~~ 106 (191)
T 3n1u_A 94 DKRSAYQHLKKTL 106 (191)
T ss_dssp SCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHh
Confidence 2356666655554
No 59
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=24.92 E-value=1.3e+02 Score=25.33 Aligned_cols=56 Identities=14% Similarity=0.165 Sum_probs=34.8
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEc--CCHHHHHHHHhCCCccccCC
Q 006373 552 GLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLAN--PRSEVIKKLNNSKFIENIGQ 612 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~--~~~~v~~~l~~~g~~~~~~~ 612 (648)
++..+++|... . |..|.+.+.++.+.. .++.+++.. .+.+......+.|..+.+.+
T Consensus 51 ~~dlii~D~~l-~--~~~g~~~~~~l~~~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~k 108 (153)
T 3cz5_A 51 TPDIVVMDLTL-P--GPGGIEATRHIRQWD--GAARILIFTMHQGSAFALKAFEAGASGYVTK 108 (153)
T ss_dssp CCSEEEECSCC-S--SSCHHHHHHHHHHHC--TTCCEEEEESCCSHHHHHHHHHTTCSEEEET
T ss_pred CCCEEEEecCC-C--CCCHHHHHHHHHHhC--CCCeEEEEECCCCHHHHHHHHHCCCcEEEec
Confidence 47899999863 3 345777777776653 345554443 24455566667888776643
No 60
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=24.87 E-value=93 Score=26.31 Aligned_cols=74 Identities=12% Similarity=0.051 Sum_probs=42.7
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcC--CHHHHHHHHhCCCccccCCcceecCHHHHHHHHHHh
Q 006373 552 GLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANP--RSEVIKKLNNSKFIENIGQEWIYLTVAEAVAACNFM 629 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~--~~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~~~~ 629 (648)
++..+++|..- . |..|.+.+.++.+. ..++.+++... +++......+.|..+.+.+.. +.++-.+..+..
T Consensus 61 ~~dlii~d~~l-~--~~~g~~~~~~l~~~--~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~---~~~~l~~~i~~~ 132 (152)
T 3eul_A 61 LPDVALLDYRM-P--GMDGAQVAAAVRSY--ELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDS---TRTEIVKAVLDC 132 (152)
T ss_dssp CCSEEEEETTC-S--SSCHHHHHHHHHHT--TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTC---CHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-C--CCCHHHHHHHHHhc--CCCCeEEEEEccCCHHHHHHHHHcCCCEEEecCC---CHHHHHHHHHHH
Confidence 47899999864 3 34577777776654 24566665543 344555666788877764322 334444444444
Q ss_pred hhcC
Q 006373 630 LHTC 633 (648)
Q Consensus 630 l~~~ 633 (648)
+..+
T Consensus 133 ~~~~ 136 (152)
T 3eul_A 133 AKGR 136 (152)
T ss_dssp HHCC
T ss_pred HcCC
Confidence 4443
No 61
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=24.52 E-value=2e+02 Score=27.33 Aligned_cols=82 Identities=13% Similarity=0.165 Sum_probs=47.7
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcC--CHHHHHHHHhCCCccccCCcceecCHHHHHHHHHHh
Q 006373 552 GLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANP--RSEVIKKLNNSKFIENIGQEWIYLTVAEAVAACNFM 629 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~--~~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~~~~ 629 (648)
++..+++|.. ++.+ .|++.++++.+......+.+++... .........+.|..+++.+-.-...+...++.+-+.
T Consensus 169 ~~dlvllD~~-mP~~--dG~~l~~~lr~~~~~~~~~ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~ 245 (259)
T 3luf_A 169 AIRLVLVDYY-MPEI--DGISLVRMLRERYSKQQLAIIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEA 245 (259)
T ss_dssp TEEEEEECSC-CSSS--CHHHHHHHHHHHCCTTTSEEEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCC-CCCC--CHHHHHHHHHhccCCCCCeEEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHHh
Confidence 3678999987 5544 5888888887766556777765443 334555556778877765432233344455554444
Q ss_pred hhcCCCC
Q 006373 630 LHTCKSN 636 (648)
Q Consensus 630 l~~~~~~ 636 (648)
+....++
T Consensus 246 ~~~~~~~ 252 (259)
T 3luf_A 246 LEQFNSE 252 (259)
T ss_dssp HHC----
T ss_pred HhhhccC
Confidence 4444333
No 62
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=24.46 E-value=70 Score=27.13 Aligned_cols=74 Identities=15% Similarity=0.225 Sum_probs=43.9
Q ss_pred CCceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcC--CHHHHHHHHhCCCccccCCcceecCHHHHHHHHHH
Q 006373 551 TGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANP--RSEVIKKLNNSKFIENIGQEWIYLTVAEAVAACNF 628 (648)
Q Consensus 551 ~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~--~~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~~~ 628 (648)
.++..+++|..- . |.+|.+.+.++.+.. .++.+++... +.+......+.|..+.+.+.. +.++-.+..+.
T Consensus 65 ~~~dlii~D~~l-~--~~~g~~~~~~l~~~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~---~~~~l~~~i~~ 136 (150)
T 4e7p_A 65 ESVDIAILDVEM-P--VKTGLEVLEWIRSEK--LETKVVVVTTFKRAGYFERAVKAGVDAYVLKER---SIADLMQTLHT 136 (150)
T ss_dssp SCCSEEEECSSC-S--SSCHHHHHHHHHHTT--CSCEEEEEESCCCHHHHHHHHHTTCSEEEETTS---CHHHHHHHHHH
T ss_pred cCCCEEEEeCCC-C--CCcHHHHHHHHHHhC--CCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCC---CHHHHHHHHHH
Confidence 457899999863 3 455777777776642 4566665543 444666667788877764322 34444444444
Q ss_pred hhhc
Q 006373 629 MLHT 632 (648)
Q Consensus 629 ~l~~ 632 (648)
.+..
T Consensus 137 ~~~~ 140 (150)
T 4e7p_A 137 VLEG 140 (150)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 4433
No 63
>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii}
Probab=24.12 E-value=68 Score=30.95 Aligned_cols=72 Identities=7% Similarity=0.028 Sum_probs=45.6
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcC-----CHHHHHHHHhCCCc-cccCCcceecCHHHHHHH
Q 006373 552 GLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANP-----RSEVIKKLNNSKFI-ENIGQEWIYLTVAEAVAA 625 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~-----~~~v~~~l~~~g~~-~~~~~~~if~s~~~Av~~ 625 (648)
+.+.+++|+.++-.-+......-.+..++++++|+++.++.- ...+.+.+++.|+. .. .+.+..+.+.+.++
T Consensus 13 ~~k~i~~D~DGtL~~~~~~~~~~~~~l~~l~~~g~~~~~~Tn~~~r~~~~~~~~l~~lg~~~~~--~~~ii~~~~~~~~~ 90 (284)
T 2hx1_A 13 KYKCIFFDAFGVLKTYNGLLPGIENTFDYLKAQGQDYYIVTNDASRSPEQLADSYHKLGLFSIT--ADKIISSGMITKEY 90 (284)
T ss_dssp GCSEEEECSBTTTEETTEECTTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHHHHTTCTTCC--GGGEEEHHHHHHHH
T ss_pred cCCEEEEcCcCCcCcCCeeChhHHHHHHHHHHCCCEEEEEeCCCCcCHHHHHHHHHHCCcCCCC--HhhEEcHHHHHHHH
Confidence 478999999987654322222234556678889999998852 35678889988875 22 23455544433333
No 64
>1eo1_A Hypothetical protein MTH1175; mixed A/B protein, mixed beta sheet, strand order 321456; NMR {Methanothermobacterthermautotrophicus} SCOP: c.55.5.1
Probab=23.90 E-value=1.2e+02 Score=25.32 Aligned_cols=50 Identities=16% Similarity=0.208 Sum_probs=38.3
Q ss_pred HHHHHHHHcCCEEEEEc-CCHHHHHHHHhCCCccccCCcceecCHHHHHHHHHH
Q 006373 576 EIKKVVDRRGLKLLLAN-PRSEVIKKLNNSKFIENIGQEWIYLTVAEAVAACNF 628 (648)
Q Consensus 576 ~l~~~~~~~gi~l~l~~-~~~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~~~ 628 (648)
.+.+.+.+.|+++++|+ ..+...+.|+..|+.-... .-.+++||++...+
T Consensus 56 ~~~~~l~~~gv~~vi~~~iG~~a~~~L~~~GI~v~~~---~~~~i~eal~~~~~ 106 (124)
T 1eo1_A 56 RTAQIIANNGVKAVIASSPGPNAFEVLNELGIKIYRA---TGTSVEENLKLFTE 106 (124)
T ss_dssp THHHHHHHTTCCEEEECCSSHHHHHHHHHHTCEEEEC---CSCCHHHHHHHHHT
T ss_pred HHHHHHHHCCCCEEEECCcCHHHHHHHHHCCCEEEEc---CCCCHHHHHHHHHh
Confidence 45666778999999996 4788999999999843332 23589999998765
No 65
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=23.81 E-value=1e+02 Score=26.42 Aligned_cols=55 Identities=13% Similarity=0.219 Sum_probs=35.4
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEc--CCHHHHHHHHhCCCccccC
Q 006373 552 GLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLAN--PRSEVIKKLNNSKFIENIG 611 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~--~~~~v~~~l~~~g~~~~~~ 611 (648)
++..|++|..- . |..|.+.++++.+.. .++.+++.. .+.+......+.|..+.+.
T Consensus 83 ~~dliilD~~l-~--~~~g~~~~~~lr~~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~ 139 (157)
T 3hzh_A 83 NIDIVTLXITM-P--KMDGITCLSNIMEFD--KNARVIMISALGKEQLVKDCLIKGAKTFIV 139 (157)
T ss_dssp GCCEEEECSSC-S--SSCHHHHHHHHHHHC--TTCCEEEEESCCCHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEeccC-C--CccHHHHHHHHHhhC--CCCcEEEEeccCcHHHHHHHHHcCCCEEEe
Confidence 46899999863 3 455777777776654 344444443 3466666777788877664
No 66
>2yx6_A Hypothetical protein PH0822; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=22.98 E-value=1.4e+02 Score=24.86 Aligned_cols=50 Identities=16% Similarity=0.269 Sum_probs=38.6
Q ss_pred HHHHHHHHcCCEEEEEc-CCHHHHHHHHhCCCccccCCcceecCHHHHHHHHHH
Q 006373 576 EIKKVVDRRGLKLLLAN-PRSEVIKKLNNSKFIENIGQEWIYLTVAEAVAACNF 628 (648)
Q Consensus 576 ~l~~~~~~~gi~l~l~~-~~~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~~~ 628 (648)
++.+.+.+.|+++++++ ..+..++.|+..|+.-..+ .-.+++||++...+
T Consensus 54 ~~~~~L~~~gv~~vi~~~iG~~a~~~L~~~GI~v~~~---~~~~v~eal~~~~~ 104 (121)
T 2yx6_A 54 DLPNFIKDHGAKIVLTYGIGRRAIEYFNSLGISVVTG---VYGRISDVIKAFIG 104 (121)
T ss_dssp HHHHHHHHTTCCEEECSBCCHHHHHHHHHTTCEEECS---BCSBHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEECCCCHhHHHHHHHCCCEEEEC---CCCCHHHHHHHHHc
Confidence 56667778999999986 5788999999999843332 23579999988765
No 67
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=22.65 E-value=1.6e+02 Score=23.88 Aligned_cols=58 Identities=10% Similarity=0.158 Sum_probs=35.6
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcC-CHHHHHHHHhCCCccccCC
Q 006373 552 GLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANP-RSEVIKKLNNSKFIENIGQ 612 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~-~~~v~~~l~~~g~~~~~~~ 612 (648)
++..+++|..- . |..|.+.++++.+........+++... .++......+.|..+.+.+
T Consensus 50 ~~dlii~d~~l-~--~~~g~~~~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~g~~~~l~k 108 (132)
T 3lte_A 50 EPAIMTLDLSM-P--KLDGLDVIRSLRQNKVANQPKILVVSGLDKAKLQQAVTEGADDYLEK 108 (132)
T ss_dssp CCSEEEEESCB-T--TBCHHHHHHHHHTTTCSSCCEEEEECCSCSHHHHHHHHHTCCEEECS
T ss_pred CCCEEEEecCC-C--CCCHHHHHHHHHhcCccCCCeEEEEeCCChHHHHHHHHhChHHHhhC
Confidence 46899999873 3 345777777666544334566666544 3444555566787776644
No 68
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=22.59 E-value=71 Score=34.43 Aligned_cols=41 Identities=10% Similarity=0.123 Sum_probs=35.9
Q ss_pred CceEEEEEecCCCccchH-----HHHHHHHHHHHHHHcCCEEEEEcCC
Q 006373 552 GLQYVILDMSSVGSIDTS-----GISMFEEIKKVVDRRGLKLLLANPR 594 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDss-----gl~~L~~l~~~~~~~gi~l~l~~~~ 594 (648)
+++.+|+| .++.+|.. ..+.+.++.+.++++|+.+++++-.
T Consensus 371 ~p~llilD--p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~ 416 (525)
T 1tf7_A 371 KPARIAID--SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTS 416 (525)
T ss_dssp CCSEEEEE--CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CCCEEEEc--ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECc
Confidence 57899999 79999998 8889999999999999999887543
No 69
>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, protein structure initiative, joint center for structural G hydrolase; 2.40A {Thermotoga maritima} SCOP: c.108.1.14 PDB: 1pw5_A*
Probab=22.51 E-value=46 Score=31.76 Aligned_cols=57 Identities=18% Similarity=0.237 Sum_probs=39.4
Q ss_pred CCceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEc---C--CHHHHHHHHhCCCc
Q 006373 551 TGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLAN---P--RSEVIKKLNNSKFI 607 (648)
Q Consensus 551 ~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~---~--~~~v~~~l~~~g~~ 607 (648)
.+.+.+++|+.++-.=+......-.+..++++++|+++.++. . ...+.+.+++.|+.
T Consensus 15 ~~~~~v~~DlDGTLl~~~~~~~~~~~~l~~l~~~G~~~~~aTn~~gr~~~~~~~~~~~lg~~ 76 (271)
T 1vjr_A 15 DKIELFILDMDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLRNMGVD 76 (271)
T ss_dssp GGCCEEEECCBTTTEETTEECTTHHHHHHHHHHTTCEEEEEESCTTSCHHHHHHHHHHTTCC
T ss_pred cCCCEEEEcCcCcEEeCCEECcCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHcCCC
Confidence 357899999988654332222233556778899999999887 2 34577888888763
No 70
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}
Probab=22.43 E-value=1.3e+02 Score=26.23 Aligned_cols=57 Identities=14% Similarity=0.156 Sum_probs=36.8
Q ss_pred eEEEEEecCCCccchH----------HHHHHHHHHHHHHHcCCEEEEEcCC-----------------HHHHHHHHhCC-
Q 006373 554 QYVILDMSSVGSIDTS----------GISMFEEIKKVVDRRGLKLLLANPR-----------------SEVIKKLNNSK- 605 (648)
Q Consensus 554 ~~vILD~s~v~~IDss----------gl~~L~~l~~~~~~~gi~l~l~~~~-----------------~~v~~~l~~~g- 605 (648)
|.+++|+.++-.-+.. -..-..++.++++++|+++.++.-+ +.+.+.+++.|
T Consensus 2 k~v~~D~DGtL~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 81 (179)
T 3l8h_A 2 KLIILDRDGVVNQDSDAFVKSPDEWIALPGSLQAIARLTQADWTVVLATNQSGLARGLFDTATLNAIHDKMHRALAQMGG 81 (179)
T ss_dssp CEEEECSBTTTBCCCTTCCCSGGGCCBCTTHHHHHHHHHHTTCEEEEEEECTTTTTTSSCHHHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEcCCCccccCCCccCCCHHHceECcCHHHHHHHHHHCCCEEEEEECCCccccCcCCHHHHHHHHHHHHHHHHhCCC
Confidence 5678888776433321 1123456777888999999887544 34678888888
Q ss_pred -Ccccc
Q 006373 606 -FIENI 610 (648)
Q Consensus 606 -~~~~~ 610 (648)
+...+
T Consensus 82 ~~~~~~ 87 (179)
T 3l8h_A 82 VVDAIF 87 (179)
T ss_dssp CCCEEE
T ss_pred ceeEEE
Confidence 65443
No 71
>1rdu_A Conserved hypothetical protein; atnos, candid, structural genomics, joint center for structu genomics, JCSG, protein structure initiative; NMR {Thermotoga maritima} SCOP: c.55.5.1
Probab=22.32 E-value=77 Score=26.23 Aligned_cols=51 Identities=18% Similarity=0.103 Sum_probs=37.9
Q ss_pred HHHHHHHHcCCEEEEEcC-CHHHHHHHHhCCCccccCCcceecCHHHHHHHHHHh
Q 006373 576 EIKKVVDRRGLKLLLANP-RSEVIKKLNNSKFIENIGQEWIYLTVAEAVAACNFM 629 (648)
Q Consensus 576 ~l~~~~~~~gi~l~l~~~-~~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~~~~ 629 (648)
.+.+.+.+.|+++++++- .+..++.|++.|+.-..+ .-.+++||++...+-
T Consensus 53 ~~~~~l~~~gv~~vi~~~iG~~a~~~L~~~GI~v~~~---~~~~i~eal~~~~~g 104 (116)
T 1rdu_A 53 KVVQSLVSKGVEYLIASNVGRNAFETLKAAGVKVYRF---EGGTVQEAIDAFSEG 104 (116)
T ss_dssp SHHHHHHTTTCCEEECSSCCSSCHHHHHTTTCEEECC---CSCBHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCEEEECCCCHhHHHHHHHCCCEEEEC---CCCCHHHHHHHHHhC
Confidence 356677789999999964 677889999999843332 235899999887653
No 72
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=21.97 E-value=3.2e+02 Score=22.22 Aligned_cols=58 Identities=10% Similarity=0.106 Sum_probs=36.0
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcC--CHHHHHHHHhCCCccccCC
Q 006373 552 GLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANP--RSEVIKKLNNSKFIENIGQ 612 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~--~~~v~~~l~~~g~~~~~~~ 612 (648)
++..+++|.. ++.. .|.+.+.++.+.....++.+++... +.+......+.|..+.+.+
T Consensus 48 ~~dlvl~D~~-lp~~--~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~ga~~~l~K 107 (136)
T 3t6k_A 48 LPDALICDVL-LPGI--DGYTLCKRVRQHPLTKTLPILMLTAQGDISAKIAGFEAGANDYLAK 107 (136)
T ss_dssp CCSEEEEESC-CSSS--CHHHHHHHHHHSGGGTTCCEEEEECTTCHHHHHHHHHHTCSEEEET
T ss_pred CCCEEEEeCC-CCCC--CHHHHHHHHHcCCCcCCccEEEEecCCCHHHHHHHHhcCcceEEeC
Confidence 4789999987 3444 4777777776644445666655543 3444445556777776643
No 73
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=21.88 E-value=40 Score=20.39 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=13.6
Q ss_pred hhHhhhhhhhhhhhccCCC
Q 006373 104 GLYSSFVPPLVYAMMGSSK 122 (648)
Q Consensus 104 gl~~~~~~~li~~~~Gss~ 122 (648)
.+.++.+++++|++|+..|
T Consensus 6 ~i~s~ai~Gi~f~lf~gQP 24 (26)
T 1bts_A 6 LLISTAVQGILFALLGAXX 24 (26)
T ss_dssp HHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 4667888888888888754
No 74
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=21.38 E-value=2e+02 Score=22.73 Aligned_cols=55 Identities=16% Similarity=0.257 Sum_probs=33.3
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcC--CHHHHHHHHhCCCccccC
Q 006373 552 GLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANP--RSEVIKKLNNSKFIENIG 611 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~--~~~v~~~l~~~g~~~~~~ 611 (648)
++..+++|..- + |..|.+.++++.+.. .+..+++... +.+......+.|..+.+.
T Consensus 47 ~~dlil~D~~l-~--~~~g~~~~~~l~~~~--~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~ 103 (120)
T 1tmy_A 47 KPDIVTMDITM-P--EMNGIDAIKEIMKID--PNAKIIVCSAMGQQAMVIEAIKAGAKDFIV 103 (120)
T ss_dssp CCSEEEEECSC-G--GGCHHHHHHHHHHHC--TTCCEEEEECTTCHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEEeCCC-C--CCcHHHHHHHHHhhC--CCCeEEEEeCCCCHHHHHHHHHhCcceeEe
Confidence 46899999863 3 344777777666542 3455554433 444455556788877664
No 75
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=20.91 E-value=1e+02 Score=25.66 Aligned_cols=70 Identities=16% Similarity=0.163 Sum_probs=38.6
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcC--CHHHHHHHHhCCCccccCCcceecCHHHHHHHH
Q 006373 552 GLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANP--RSEVIKKLNNSKFIENIGQEWIYLTVAEAVAAC 626 (648)
Q Consensus 552 ~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~--~~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~ 626 (648)
++..+++|+. +... .|.+.+.++.+. ..++.+++... ..+......+.|..+.+.+-.-...+.++++.+
T Consensus 48 ~~dlvllD~~-l~~~--~g~~l~~~l~~~--~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~ 119 (137)
T 3cfy_A 48 KPQLIILDLK-LPDM--SGEDVLDWINQN--DIPTSVIIATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALH 119 (137)
T ss_dssp CCSEEEECSB-CSSS--BHHHHHHHHHHT--TCCCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHH
T ss_pred CCCEEEEecC-CCCC--CHHHHHHHHHhc--CCCCCEEEEEecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHH
Confidence 4679999986 3433 466666665543 24566665543 344455556678877664422223344444433
No 76
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=20.88 E-value=91 Score=29.12 Aligned_cols=41 Identities=10% Similarity=0.139 Sum_probs=31.3
Q ss_pred CceEEEEEecCCCccc-----hHHHHHHHHHHHHHHHcCCEEEEEcC
Q 006373 552 GLQYVILDMSSVGSID-----TSGISMFEEIKKVVDRRGLKLLLANP 593 (648)
Q Consensus 552 ~~~~vILD~s~v~~ID-----ssgl~~L~~l~~~~~~~gi~l~l~~~ 593 (648)
+++.+++| +.....| ....+.+.++.++++++|+.++++.-
T Consensus 135 ~p~~lilD-ep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH 180 (251)
T 2ehv_A 135 NAKRLVID-SIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTE 180 (251)
T ss_dssp TCSEEEEE-CHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEEC
T ss_pred CCCEEEEc-cHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 57889999 4455555 55556689999999999999888753
No 77
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=20.40 E-value=1.2e+02 Score=24.66 Aligned_cols=56 Identities=14% Similarity=0.133 Sum_probs=31.7
Q ss_pred CCceEEEEEecCCCccchHHHHHHHHHHHHHHHcCCEEEEEcC--CHHHHHHHHhCCCccccC
Q 006373 551 TGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANP--RSEVIKKLNNSKFIENIG 611 (648)
Q Consensus 551 ~~~~~vILD~s~v~~IDssgl~~L~~l~~~~~~~gi~l~l~~~--~~~v~~~l~~~g~~~~~~ 611 (648)
.++..+++|..- . |..|.+.+.++.+.. .++.+++... +.+......+.|..+.+.
T Consensus 50 ~~~dlvi~d~~l-~--~~~g~~~~~~l~~~~--~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~ 107 (130)
T 3eod_A 50 FTPDLMICDIAM-P--RMNGLKLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLL 107 (130)
T ss_dssp CCCSEEEECCC--------CHHHHHHHHHTT--CCCCEEEEECCCCHHHHHHHHHHCCSEEEE
T ss_pred CCCCEEEEecCC-C--CCCHHHHHHHHHhcC--CCCCEEEEEcCCCHHHHHHHHHcCCCEEEe
Confidence 357899999863 2 456777777766532 3455544433 444445556678777664
No 78
>2re2_A Uncharacterized protein TA1041; dinitrogenase iron-molybdenum cofactor, structural genomics, center for structural genomics; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728}
Probab=20.36 E-value=1.5e+02 Score=25.34 Aligned_cols=49 Identities=20% Similarity=0.055 Sum_probs=37.2
Q ss_pred HHHHHHHHcCCEEEEEc-CCHHHHHHHHhCCCccccCCcceecCHHHHHHHHHH
Q 006373 576 EIKKVVDRRGLKLLLAN-PRSEVIKKLNNSKFIENIGQEWIYLTVAEAVAACNF 628 (648)
Q Consensus 576 ~l~~~~~~~gi~l~l~~-~~~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~~~ 628 (648)
.+.+.+.+.|+++++|+ ..+..++.|+. |+.-..+. -.+++||++...+
T Consensus 70 ~~~~~L~~~gv~~VI~g~iG~~a~~~L~~-GI~v~~~~---~~~veeal~~~~~ 119 (136)
T 2re2_A 70 FMLKSALDHGANALVLSEIGSPGFNFIKN-KMDVYIVP---EMPVADALKLILE 119 (136)
T ss_dssp HHHHHHHHTTCSEEEESCCBHHHHHHHTT-TSEEEECC---SCBHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEECCCCHhHHHHHHC-CCEEEEcC---CCCHHHHHHHHHh
Confidence 45666777899999996 47888899999 98443331 2589999998766
No 79
>1o13_A Probable NIFB protein; ribonuclease H-like motif fold, structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.83A {Thermotoga maritima} SCOP: c.55.5.1 PDB: 1t3v_A
Probab=20.16 E-value=1.3e+02 Score=25.86 Aligned_cols=50 Identities=18% Similarity=0.155 Sum_probs=38.5
Q ss_pred HHHHHHHHcCCEEEEEc-CCHHHHHHHHhCCCccccCCcceecCHHHHHHHHHH
Q 006373 576 EIKKVVDRRGLKLLLAN-PRSEVIKKLNNSKFIENIGQEWIYLTVAEAVAACNF 628 (648)
Q Consensus 576 ~l~~~~~~~gi~l~l~~-~~~~v~~~l~~~g~~~~~~~~~if~s~~~Av~~~~~ 628 (648)
++.+.+.++|+++++++ ..+..++.|++.|+.-..+ .-.+++||++...+
T Consensus 67 ~~a~~L~~~gv~vVI~g~IG~~a~~~L~~~GI~v~~~---~~g~i~eal~~~~~ 117 (136)
T 1o13_A 67 AVPNFVKEKGAELVIVRGIGRRAIAAFEAMGVKVIKG---ASGTVEEVVNQYLS 117 (136)
T ss_dssp CHHHHHHHTTCSEEECSCCCHHHHHHHHHTTCEEECS---CCSBHHHHHHHHHT
T ss_pred HHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCEEEec---CCCCHHHHHHHHHh
Confidence 45677788999999986 4788999999999844332 23589999988754
Done!