BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006374
(648 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From
Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion
Channel
Length = 137
Score = 89.4 bits (220), Expect = 6e-18, Method: Composition-based stats.
Identities = 44/122 (36%), Positives = 70/122 (57%)
Query: 421 LKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFIXXXXXXXXXXXXXX 480
+++VP+F+ M + +L +C+ LKP L+ ++ +V+EGDP+ EM FI
Sbjct: 8 VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGR 67
Query: 481 XXSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVY 540
+ L GDF G+EL T ALDP SN+P S + ++T VEAFA+ D+L+ +
Sbjct: 68 SGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVAS 127
Query: 541 QY 542
Q+
Sbjct: 128 QF 129
>pdb|3D0S|A Chain A, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|3D0S|B Chain B, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|4A2U|A Chain A, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|B Chain B, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|C Chain C, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|D Chain D, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|E Chain E, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|F Chain F, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|G Chain G, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|H Chain H, Crp(Cap) From Myco. Tuberculosis, With Camp
Length = 227
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 10/119 (8%)
Query: 419 EVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFIXXXXXXXXXXXX 478
E+L + +FQ + S ++ + K L+PV + + + EG+P ++ I
Sbjct: 6 EILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAP 65
Query: 479 XXXXSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRA 537
++ + D +GE S DP P + + ++T V A +++ D LR+
Sbjct: 66 DGRENLL-TIMGPSDMFGE---LSIFDPGPRT------SSATTITEVRAVSMDRDALRS 114
>pdb|3I54|A Chain A, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|B Chain B, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|C Chain C, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|D Chain D, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I59|B Chain B, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 10/119 (8%)
Query: 419 EVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFIXXXXXXXXXXXX 478
E+L + +FQ + S ++ + K L+PV + + + EG+P ++ I
Sbjct: 28 EILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAP 87
Query: 479 XXXXSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRA 537
++ + D +GE S DP P + + ++T V A +++ D LR+
Sbjct: 88 DGRENLL-TIMGPSDMFGE---LSIFDPGPRT------SSATTITEVRAVSMDRDALRS 136
>pdb|3MZH|A Chain A, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
pdb|3MZH|B Chain B, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
Length = 225
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 10/119 (8%)
Query: 419 EVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFIXXXXXXXXXXXX 478
E+L + +FQ + S ++ + K L+PV + + + EG+P ++ I
Sbjct: 4 EILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAP 63
Query: 479 XXXXSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRA 537
++ + D +GE S DP P + + ++T V A +++ D LR+
Sbjct: 64 DGRENLL-TIMGPSDMFGE---LSIFDPGPRT------SSATTITEVRAVSMDRDALRS 112
>pdb|3H3U|A Chain A, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
pdb|3H3U|B Chain B, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
Length = 224
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 10/119 (8%)
Query: 419 EVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFIXXXXXXXXXXXX 478
E+L + +FQ + S ++ + K L+PV + + + EG+P ++ I
Sbjct: 3 EILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAP 62
Query: 479 XXXXSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRA 537
++ + D +GE S DP P + + ++T V A +++ D LR+
Sbjct: 63 DGRENLL-TIMGPSDMFGE---LSIFDPGPRT------SSATTITEVRAVSMDRDALRS 111
>pdb|3I59|A Chain A, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 10/119 (8%)
Query: 419 EVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFIXXXXXXXXXXXX 478
E+L + +FQ + S ++ + K L+PV + + + EG+P ++ I
Sbjct: 28 EILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAP 87
Query: 479 XXXXSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRA 537
++ D +GE S DP P + + ++T V A +++ D LR+
Sbjct: 88 DGRENLL-TIXGPSDMFGE---LSIFDPGPRT------SSATTITEVRAVSMDRDALRS 136
>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
pdb|3SHR|B Chain B, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
Length = 299
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%)
Query: 418 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFIXXXXXXXXXXX 477
+E LK VP FQ + + ILS++ L+ Y I+++G F I
Sbjct: 156 MEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTRED 215
Query: 478 XXXXXSVFKKYLSTGDFWGEE 498
VF + L GD++GE+
Sbjct: 216 SPNEDPVFLRTLGKGDWFGEK 236
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 433 SILSEMCKCLKPVLYVQECCIVKEGD 458
S + E+ C+ PV Y ++ CI+KEGD
Sbjct: 53 SQIQEIVDCMYPVEYGKDSCIIKEGD 78
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 419 EVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFI 466
+++ VP+FQ +G ++L E+ + L+ I + G+P MFF+
Sbjct: 228 QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFV 275
>pdb|3R6S|A Chain A, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|B Chain B, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|C Chain C, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|D Chain D, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|E Chain E, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|F Chain F, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
Length = 247
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 10/122 (8%)
Query: 415 ELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFIXXXXXXXX 474
E E+L + +FQ + + ++ + + ++ V + + I EG+P ++ I
Sbjct: 22 EGVQEILSRAGIFQGVDPTAVNNLIQDMETVRFPRGATIFDEGEPGDRLYIITSGKVKLA 81
Query: 475 XXXXXXXXSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDD 534
++ + D +GE S DP P + + + VT V A +N+D
Sbjct: 82 RHAPDGRENLL-TIMGPSDMFGE---LSIFDPGPRT------SSAVCVTEVHAATMNSDM 131
Query: 535 LR 536
LR
Sbjct: 132 LR 133
>pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human
Hcn4 Channel
Length = 220
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/109 (20%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 358 KSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVEXXXXXXXXXXXWEMKSELC 417
+ K +++EQ+ +F L +QR+ ++ ++ +Q + D E E+ + C
Sbjct: 9 QEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQ-GKMFDEESILGELSEPLREEIINFNC 67
Query: 418 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFI 466
+++ +P+F + ++ M L+ ++ I++EG +M+FI
Sbjct: 68 RKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFI 116
>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus
Carrying The S672r Mutation
Length = 205
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/109 (20%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 358 KSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVEXXXXXXXXXXXWEMKSELC 417
+ K +++EQ+ +F L +QR+ ++ ++ +Q + D E E+ + C
Sbjct: 9 QEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQG-KMFDEESILGELSEPLREEIINFNC 67
Query: 418 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFI 466
+++ +P+F + ++ M L+ ++ I++EG +M+FI
Sbjct: 68 RKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFI 116
>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U0Z|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/109 (19%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 358 KSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVEXXXXXXXXXXXWEMKSELC 417
+ K +++EQ+ +F L ++Q++ ++ ++ +Q + D E E+ + C
Sbjct: 15 QEKYKQVEQYMSFHKLPADMRQKIHDYYEHRYQG-KIFDEENILSELNDPLREEIVNFNC 73
Query: 418 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFI 466
+++ +P+F + ++ M L+ ++ I++EG +M+FI
Sbjct: 74 RKLVATMPLFANADPNFVTAMLSKLRFEVFQPGDYIIREGAVGKKMYFI 122
>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp
pdb|1Q3E|B Chain B, Hcn2j 443-645 In The Presence Of Cgmp
Length = 207
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/109 (19%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 358 KSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVEXXXXXXXXXXXWEMKSELC 417
+ K +++EQ+ +F L +Q++ ++ ++ +Q + D + E+ + C
Sbjct: 12 QEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFNC 70
Query: 418 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFI 466
+++ +P+F + ++ M LK ++ I++EG +M+FI
Sbjct: 71 RKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFI 119
>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
pdb|2Q0A|B Chain B, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 200
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/109 (19%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 358 KSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVEXXXXXXXXXXXWEMKSELC 417
+ K +++EQ+ +F L +Q++ ++ ++ +Q + D + E+ + C
Sbjct: 10 QEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFNC 68
Query: 418 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFI 466
+++ +P+F + ++ M LK ++ I++EG +M+FI
Sbjct: 69 RKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFI 117
>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/109 (19%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 358 KSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVEXXXXXXXXXXXWEMKSELC 417
+ K +++EQ+ +F L +Q++ ++ ++ +Q + D + E+ + C
Sbjct: 15 QEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFNC 73
Query: 418 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFI 466
+++ +P+F + ++ M LK ++ I++EG +M+FI
Sbjct: 74 RKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFI 122
>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State
pdb|3FFQ|B Chain B, Hcn2i 443-640 Apo-State
Length = 202
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/109 (19%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 358 KSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVEXXXXXXXXXXXWEMKSELC 417
+ K +++EQ+ +F L +Q++ ++ ++ +Q + D + E+ + C
Sbjct: 12 QEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFNC 70
Query: 418 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFI 466
+++ +P+F + ++ M LK ++ I++EG +M+FI
Sbjct: 71 RKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFI 119
>pdb|1U12|A Chain A, M. Loti Cyclic Nucleotide Binding Domain Mutant
pdb|1U12|B Chain B, M. Loti Cyclic Nucleotide Binding Domain Mutant
Length = 138
Score = 33.1 bits (74), Expect = 0.53, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 419 EVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFI 466
+++ VP+FQ +G ++L E+ + L+ I + G+P MFF+
Sbjct: 11 QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFV 58
>pdb|1VP6|A Chain A, M.Loti Ion Channel Cylic Nucleotide Binding Domain
pdb|1VP6|C Chain C, M.Loti Ion Channel Cylic Nucleotide Binding Domain
Length = 138
Score = 33.1 bits (74), Expect = 0.53, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 419 EVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFI 466
+++ VP+FQ +G ++L E+ + L+ I + G+P MFF+
Sbjct: 11 QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFV 58
>pdb|2K0G|A Chain A, Solution Structure Of A Bacterial Cyclic Nucleotide-
Activated K+ Channel Binding Domain In Complex With Camp
pdb|2KXL|A Chain A, Solution Structure Of A Bacterial Cyclic
Nucleotide-Activated K+ Channel Binding Domain In The
Unliganded State
Length = 142
Score = 33.1 bits (74), Expect = 0.53, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 419 EVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFI 466
+++ VP+FQ +G ++L E+ + L+ I + G+P MFF+
Sbjct: 15 QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFV 62
>pdb|3CO2|A Chain A, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|B Chain B, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|C Chain C, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|D Chain D, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
Length = 140
Score = 33.1 bits (74), Expect = 0.53, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 419 EVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFI 466
+++ VP+FQ +G ++L E+ + L+ I + G+P MFF+
Sbjct: 13 QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFV 60
>pdb|3CLP|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
pdb|3CLP|C Chain C, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
Length = 140
Score = 33.1 bits (74), Expect = 0.53, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 419 EVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFI 466
+++ VP+FQ +G ++L E+ + L+ I + G+P MFF+
Sbjct: 13 QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFV 60
>pdb|3CL1|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
pdb|3CL1|B Chain B, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
Length = 140
Score = 33.1 bits (74), Expect = 0.53, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 419 EVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFI 466
+++ VP+FQ +G ++L E+ + L+ I + G+P MFF+
Sbjct: 13 QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFV 60
>pdb|1WLY|A Chain A, Crystal Structure Of 2-haloacrylate Reductase
Length = 333
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 9/97 (9%)
Query: 535 LRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLYAKENIL 594
L+ + QY H+ H ++P D ++ I W R+ + G++ +E
Sbjct: 128 LKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGH---IMVPWARHLGATVIGTVSTEE--- 181
Query: 595 QDQKAEAGGKPSKFGTAIYATQFFTYVRRSVKRNGGL 631
KAE K T Y+TQ F V R + G+
Sbjct: 182 ---KAETARKLGCHHTINYSTQDFAEVVREITGGKGV 215
>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|B Chain B, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|C Chain C, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|D Chain D, Hcn2-I 443-460 E502k In The Presence Of Camp
Length = 202
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/111 (18%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 356 EIKSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVEXXXXXXXXXXXWEMKSE 415
+ + K +++EQ+ +F L +Q++ ++ ++ +Q + D + ++ +
Sbjct: 10 QYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREKIVNF 68
Query: 416 LCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFI 466
C +++ +P+F + ++ M LK ++ I++EG +M+FI
Sbjct: 69 NCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFI 119
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKT|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKV|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
Length = 212
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/108 (18%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Query: 359 SKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVEXXXXXXXXXXXWEMKSELCL 418
++ ++++ + L ++L QR+ Q W GIDV ++ L
Sbjct: 16 TRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNK 75
Query: 419 EVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFI 466
E+L ++P+F+ + L + +K ++++GD + ++F+
Sbjct: 76 ELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFV 122
>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U11|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/109 (19%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 358 KSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVEXXXXXXXXXXXWEMKSELC 417
+ K +++EQ+ +F L +QR+ ++ ++ +Q + D E E+ +
Sbjct: 15 QEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQG-KMFDEESILGELSEPLREEIINFNX 73
Query: 418 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFI 466
+++ +P+F + ++ M L+ ++ I++EG +M+FI
Sbjct: 74 RKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFI 122
>pdb|3OCP|A Chain A, Crystal Structure Of Camp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OCP|B Chain B, Crystal Structure Of Camp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OD0|A Chain A, Crystal Structure Of Cgmp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OD0|B Chain B, Crystal Structure Of Cgmp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OGJ|A Chain A, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|B Chain B, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|C Chain C, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|D Chain D, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
Length = 139
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 433 SILSEMCKCLKPVLYVQECCIVKEGD 458
S + E+ C+ PV Y ++ CI+KEGD
Sbjct: 37 SQIQEIVDCMYPVEYGKDSCIIKEGD 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.136 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,674,456
Number of Sequences: 62578
Number of extensions: 604084
Number of successful extensions: 1251
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1236
Number of HSP's gapped (non-prelim): 28
length of query: 648
length of database: 14,973,337
effective HSP length: 105
effective length of query: 543
effective length of database: 8,402,647
effective search space: 4562637321
effective search space used: 4562637321
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)