Query 006374
Match_columns 648
No_of_seqs 469 out of 3092
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 22:21:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006374.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006374hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 8.9E-93 1.9E-97 785.5 42.5 540 40-631 64-619 (727)
2 PLN03192 Voltage-dependent pot 100.0 1E-63 2.2E-68 587.0 46.9 424 40-544 48-488 (823)
3 KOG0500 Cyclic nucleotide-gate 100.0 5.8E-63 1.3E-67 509.1 31.5 410 57-546 3-427 (536)
4 KOG0499 Cyclic nucleotide-gate 100.0 3.6E-58 7.9E-63 478.7 29.1 411 41-544 215-643 (815)
5 KOG0501 K+-channel KCNQ [Inorg 100.0 2.4E-58 5.3E-63 478.1 23.8 439 40-542 204-658 (971)
6 PRK09392 ftrB transcriptional 99.7 3.5E-16 7.5E-21 157.9 18.1 184 418-630 6-202 (236)
7 PRK11753 DNA-binding transcrip 99.7 8.5E-15 1.8E-19 145.0 20.8 176 428-632 6-199 (211)
8 PRK11161 fumarate/nitrate redu 99.6 2.6E-14 5.6E-19 144.1 18.1 182 421-632 15-215 (235)
9 KOG3713 Voltage-gated K+ chann 99.6 5.3E-15 1.1E-19 155.9 10.2 192 92-353 240-436 (477)
10 PRK10402 DNA-binding transcrip 99.5 1.5E-13 3.2E-18 137.8 16.9 179 430-638 19-208 (226)
11 PRK09391 fixK transcriptional 99.5 5.7E-13 1.2E-17 133.9 16.3 165 436-632 32-210 (230)
12 TIGR03697 NtcA_cyano global ni 99.4 2.8E-12 6E-17 125.1 15.9 122 450-598 1-123 (193)
13 COG0664 Crp cAMP-binding prote 99.4 9.4E-12 2E-16 122.6 17.9 167 422-617 3-181 (214)
14 cd00038 CAP_ED effector domain 99.4 8.4E-12 1.8E-16 109.5 13.5 107 426-543 1-108 (115)
15 PF00027 cNMP_binding: Cyclic 99.3 9.4E-12 2E-16 105.2 11.4 90 444-543 1-90 (91)
16 PRK13918 CRP/FNR family transc 99.3 8.5E-11 1.8E-15 115.6 16.6 167 441-632 5-180 (202)
17 KOG1545 Voltage-gated shaker-l 99.3 1.1E-13 2.3E-18 139.0 -4.2 58 296-353 395-452 (507)
18 smart00100 cNMP Cyclic nucleot 99.3 8.1E-11 1.8E-15 103.8 14.2 109 426-543 1-110 (120)
19 KOG1419 Voltage-gated K+ chann 99.2 2.5E-11 5.4E-16 128.5 10.5 90 290-386 265-354 (654)
20 PF00520 Ion_trans: Ion transp 99.2 7.5E-11 1.6E-15 114.7 9.2 184 97-343 2-200 (200)
21 PLN02868 acyl-CoA thioesterase 99.2 2.9E-10 6.3E-15 124.2 14.0 113 418-543 7-119 (413)
22 KOG0614 cGMP-dependent protein 99.1 4.6E-11 1E-15 125.8 6.7 119 415-542 268-387 (732)
23 COG2905 Predicted signal-trans 99.1 9.9E-10 2.1E-14 117.7 15.2 112 418-543 6-117 (610)
24 KOG1113 cAMP-dependent protein 99.1 2.5E-10 5.4E-15 115.7 9.8 110 418-542 121-230 (368)
25 PF07885 Ion_trans_2: Ion chan 99.1 3.7E-10 7.9E-15 93.5 8.9 55 294-348 24-78 (79)
26 KOG0614 cGMP-dependent protein 99.1 1.4E-10 3E-15 122.3 6.7 117 411-542 146-262 (732)
27 KOG1113 cAMP-dependent protein 98.7 3.2E-08 7E-13 100.6 6.9 116 413-542 234-349 (368)
28 KOG4390 Voltage-gated A-type K 98.6 2.4E-09 5.1E-14 108.8 -2.1 55 294-348 356-414 (632)
29 PRK10537 voltage-gated potassi 98.4 3.4E-06 7.4E-11 90.9 14.1 54 294-347 168-221 (393)
30 KOG1420 Ca2+-activated K+ chan 98.3 6.5E-07 1.4E-11 95.3 5.3 137 292-436 286-427 (1103)
31 KOG3684 Ca2+-activated K+ chan 97.9 0.00031 6.7E-09 74.3 16.3 92 291-390 284-375 (489)
32 PF01007 IRK: Inward rectifier 97.9 3.6E-05 7.7E-10 81.0 9.2 58 293-350 83-142 (336)
33 KOG2968 Predicted esterase of 97.8 3.4E-05 7.3E-10 86.9 6.2 99 434-543 500-599 (1158)
34 PRK11832 putative DNA-binding 97.5 0.0041 8.8E-08 60.5 15.1 109 433-573 13-122 (207)
35 KOG1418 Tandem pore domain K+ 97.5 0.00013 2.8E-09 79.9 5.1 57 294-350 115-171 (433)
36 PF08412 Ion_trans_N: Ion tran 97.3 0.00016 3.5E-09 58.6 2.6 35 40-74 33-70 (77)
37 PF04831 Popeye: Popeye protei 97.1 0.031 6.6E-07 51.2 15.8 104 429-542 14-119 (153)
38 KOG2968 Predicted esterase of 97.1 0.0037 8.1E-08 71.0 11.5 102 437-543 110-213 (1158)
39 KOG3827 Inward rectifier K+ ch 96.3 0.028 6E-07 58.8 10.4 57 294-350 112-170 (400)
40 KOG4404 Tandem pore domain K+ 96.3 0.0015 3.3E-08 66.3 1.0 51 294-344 80-130 (350)
41 KOG4404 Tandem pore domain K+ 96.2 0.0053 1.2E-07 62.4 4.5 60 294-353 186-253 (350)
42 KOG3542 cAMP-regulated guanine 95.5 0.03 6.5E-07 61.8 7.1 116 413-542 275-391 (1283)
43 KOG1418 Tandem pore domain K+ 95.2 0.0083 1.8E-07 65.6 1.6 48 293-340 241-296 (433)
44 KOG2302 T-type voltage-gated C 94.5 0.71 1.5E-05 53.6 14.1 32 40-71 1101-1144(1956)
45 KOG3193 K+ channel subunit [In 92.4 0.26 5.5E-06 53.5 6.1 49 296-344 219-267 (1087)
46 KOG3542 cAMP-regulated guanine 91.1 0.42 9.2E-06 53.1 6.2 104 405-531 23-126 (1283)
47 COG4709 Predicted membrane pro 81.4 6 0.00013 37.7 7.3 71 359-431 5-79 (195)
48 PF08006 DUF1700: Protein of u 73.9 15 0.00033 35.2 8.1 56 359-416 5-64 (181)
49 PF07883 Cupin_2: Cupin domain 73.2 6.7 0.00014 30.7 4.6 45 445-496 3-48 (71)
50 PLN03223 Polycystin cation cha 72.3 47 0.001 41.1 12.8 28 323-350 1398-1425(1634)
51 PRK13290 ectC L-ectoine syntha 69.3 28 0.00061 31.3 8.1 69 443-530 38-106 (125)
52 PF13314 DUF4083: Domain of un 69.2 31 0.00066 26.3 6.8 48 320-370 4-57 (58)
53 KOG3676 Ca2+-permeable cation 67.6 92 0.002 36.4 13.4 75 307-382 601-682 (782)
54 PF00060 Lig_chan: Ligand-gate 65.6 12 0.00027 33.9 5.4 75 291-371 41-115 (148)
55 TIGR03037 anthran_nbaC 3-hydro 59.3 31 0.00068 32.3 6.6 65 454-536 43-107 (159)
56 PF05899 Cupin_3: Protein of u 58.2 17 0.00036 29.3 4.1 42 447-496 14-55 (74)
57 PRK13264 3-hydroxyanthranilate 51.9 33 0.00072 32.7 5.6 62 458-536 52-113 (177)
58 PF14377 DUF4414: Domain of un 42.8 25 0.00053 30.7 3.0 45 371-415 51-105 (108)
59 COG0662 {ManC} Mannose-6-phosp 41.3 81 0.0018 28.2 6.3 50 440-496 36-86 (127)
60 COG1917 Uncharacterized conser 38.1 73 0.0016 28.4 5.5 51 442-499 45-96 (131)
61 PF02037 SAP: SAP domain; Int 37.6 70 0.0015 21.6 4.0 26 360-385 5-35 (35)
62 PF07697 7TMR-HDED: 7TM-HD ext 36.2 1.5E+02 0.0033 28.8 8.0 33 429-461 173-207 (222)
63 PF10011 DUF2254: Predicted me 33.7 1.2E+02 0.0026 32.7 7.3 62 290-351 96-157 (371)
64 COG3718 IolB Uncharacterized e 33.2 1.8E+02 0.0039 29.0 7.4 78 442-534 31-112 (270)
65 smart00835 Cupin_1 Cupin. This 33.0 1.2E+02 0.0026 27.7 6.2 56 441-498 31-88 (146)
66 PLN03192 Voltage-dependent pot 31.8 9.8E+02 0.021 28.8 17.9 42 371-417 357-398 (823)
67 PF12973 Cupin_7: ChrR Cupin-l 29.2 1.2E+02 0.0025 25.3 5.0 64 441-529 25-88 (91)
68 PF08285 DPM3: Dolichol-phosph 26.7 3.9E+02 0.0085 22.5 8.7 38 337-374 50-90 (91)
69 PRK04190 glucose-6-phosphate i 25.5 2.8E+02 0.0061 26.9 7.4 53 442-496 70-131 (191)
70 TIGR03404 bicupin_oxalic bicup 25.1 1.9E+02 0.004 31.2 6.8 52 442-496 69-121 (367)
71 TIGR02272 gentisate_1_2 gentis 24.9 2.3E+02 0.005 30.1 7.2 77 445-542 255-331 (335)
72 COG5559 Uncharacterized conser 24.4 1.1E+02 0.0025 23.3 3.4 23 369-391 7-29 (65)
73 PF00520 Ion_trans: Ion transp 24.3 4.5E+02 0.0097 24.3 8.8 19 205-223 104-122 (200)
74 PF13174 TPR_6: Tetratricopept 23.5 1.4E+02 0.0031 18.7 3.6 19 585-603 14-32 (33)
75 PF01484 Col_cuticle_N: Nemato 23.2 2.9E+02 0.0063 20.1 5.7 39 325-363 10-48 (53)
76 PHA03029 hypothetical protein; 22.9 2.9E+02 0.0064 22.1 5.6 39 318-356 2-40 (92)
77 TIGR03404 bicupin_oxalic bicup 22.9 2E+02 0.0044 31.0 6.5 52 442-496 247-300 (367)
78 KOG2301 Voltage-gated Ca2+ cha 22.6 3.8E+02 0.0083 34.7 9.6 184 126-336 901-1092(1592)
79 PRK11171 hypothetical protein; 20.9 2.6E+02 0.0056 28.6 6.6 49 441-496 185-234 (266)
80 PF07077 DUF1345: Protein of u 20.7 1.7E+02 0.0037 28.1 4.9 51 291-341 129-179 (180)
81 KOG1054 Glutamate-gated AMPA-t 20.2 95 0.0021 35.0 3.3 71 297-373 598-668 (897)
82 PRK10579 hypothetical protein; 20.0 5.5E+02 0.012 21.9 7.3 62 445-527 28-89 (94)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=8.9e-93 Score=785.45 Aligned_cols=540 Identities=36% Similarity=0.653 Sum_probs=471.8
Q ss_pred cccCceecCCCcc---hHHHHHHHHHHHHhhcceeEEEEEEcCCcceeeecccceeehhhhHHHHHHhhhh-----hc--
Q 006374 40 NHINRIVDPRGPF---WNWIWLAVRIISTSLDPLFFYIFVVNDHKKCVDLDIKLAIIAISLRTIFDFFNII-----YS-- 109 (648)
Q Consensus 40 ~~~~~vi~P~s~~---Wd~~~~~~~l~~~~~~Pl~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~D~~f~~-----f~-- 109 (648)
....+||||.|+| ||.+++++|+|+++++|++++|+..++...| +|......++++|.++|++|++ |+
T Consensus 64 ~~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frta 141 (727)
T KOG0498|consen 64 KSRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTA 141 (727)
T ss_pred cccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheEE
Confidence 3446699999999 9999999999999999999999999888888 7877888899999999999999 54
Q ss_pred ----CC-ccccChhHhhhhhhhhHH-hHHHhhhcCCccchhheeeeccCCCCCccchhhHHHHHHHHHHhHHHHHHHHHH
Q 006374 110 ----SS-TPHKHSRANAKKCFYLNS-FLKDLLSCLPIPQLVTSIIIITSKGSGFFPAMVWLKVVVIVQYVPRFYRIYRLY 183 (648)
Q Consensus 110 ----~~-~~v~d~~~Ia~~~~Ylk~-F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~llrl~~l~~~l~rl~ri~rl~ 183 (648)
++ ++|.||++||+ ||+++ |++|++|++|+++++.|.++ ..++.... ...+..+.+++|++|+.|+.+++
T Consensus 142 yv~~~s~elV~dpk~IA~--rYl~twFiiDlis~lP~~~i~~~~~~--~~~~~~~~-~~~l~~il~~~rL~Rl~Rv~~l~ 216 (727)
T KOG0498|consen 142 YVDPSSYELVDDPKKIAK--RYLKTWFLIDLISTLPFDQIVVLVVI--GSTSLALE-STILVGILLLQRLPRLRRVIPLF 216 (727)
T ss_pred EECCCCceeeeCHHHHHH--HHHhhhHHHHHHHhcChhhheeeeee--cccchhhh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34 49999999999 99999 99999999999999998765 11111111 22455555667799999999999
Q ss_pred HHHhhccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhccCCcccccccccCCCCccccccccCC
Q 006374 184 AVAESTSGILAQMKWVKSACCILIYLLAAHVFGALWYFMAIERETECWKKACREHTECYQNSFHCYETVGNYTFLTGLCP 263 (648)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~l~~~ll~~H~~aC~wy~~~~~~~~~~w~~~c~~~~~c~~~~~~~~~~~~~~~W~~~~~~ 263 (648)
+++++..+++.+++|++.++++++|++++||.||+||++|.++.+.||+++ +|+...+.
T Consensus 217 ~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~---------------------tw~~~l~~ 275 (727)
T KOG0498|consen 217 ARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA---------------------TWLGSLGR 275 (727)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc---------------------cccccccc
Confidence 999999999999999997788889999999999999999999988898643 45543211
Q ss_pred CCcCCCCccccchhHHHHhhccccccchHHHHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 006374 264 TMIQDTTMFNFGMFQEAIQSGMVEEKAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNL 343 (648)
Q Consensus 264 ~~~~~~~~~~~g~y~~~l~~~~~~~~~~~~~Yi~slYwa~~TmttvGyGdi~p~~~~E~i~~i~~~i~G~~~fa~iig~i 343 (648)
..++.+..|+||+|. ++.+|++|+||+++||||+||||.+|+|..|++|+|++|++|.++||++||||
T Consensus 276 ~~~~~~~~~~fg~~s------------~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNm 343 (727)
T KOG0498|consen 276 LLSCYNLSFTFGIYS------------LALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNM 343 (727)
T ss_pred ccccCcccccccchh------------HHHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhH
Confidence 111233446788765 45699999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhcccccchhhhHHHHHHHHhcC
Q 006374 344 TIYLQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLKK 423 (648)
Q Consensus 344 ~~ii~~~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~~~~L~~ 423 (648)
+++++.++.+.++|+.+|.++++||++++||++||+||++|++|+|..++|+||+++|++||++||.+|++|+|.+++++
T Consensus 344 t~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~ 423 (727)
T KOG0498|consen 344 TALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRK 423 (727)
T ss_pred HHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEechhhhcc
Q 006374 424 VPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSA 503 (648)
Q Consensus 424 i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~ 503 (648)
+|+|+++|++.+.+|+.++++..|+|||+|++|||+.++||||.+|.+++...+||.+ .+...+++||+|||+-+.|+
T Consensus 424 vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~--~~~~~L~~Gd~~GeEl~~~~ 501 (727)
T KOG0498|consen 424 VPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGF--FVVAILGPGDFFGEELLTWC 501 (727)
T ss_pred CchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCce--EEEEEecCCCccchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999877644 35899999999996655566
Q ss_pred CCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhchhhhhhhhhhHHHHhhhchhhhhhHHhHHHHHHHHHHhhhh
Q 006374 504 LDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKL 583 (648)
Q Consensus 504 l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~~~r~~ 583 (648)
++ .| +++||+|+|.|+++.|+++||..++++| +++++++++++|++|+++|++|+++.+|.+|+++.+|..
T Consensus 502 ~~------~p-~t~TVralt~~el~~L~~~dL~~V~~~f--~~~~~~~l~~~~r~~s~~~r~~aa~~iq~a~r~~~~~~~ 572 (727)
T KOG0498|consen 502 LD------LP-QTRTVRALTYCELFRLSADDLKEVLQQF--RRLGSKFLQHTFRYYSHLWRTWAACFIQAAWRRHIKRKG 572 (727)
T ss_pred hc------CC-CCceeehhhhhhHHhccHHHHHHHHHHh--HHHHHHHHHhHHHHhhhhhhhhhhhhHHHHHHHHHHhhc
Confidence 53 23 5889999999999999999999999999 799999999999999999999999999999999999986
Q ss_pred hhhHHHHHhhhhhhhhhcCCCCCcchhHHHHHHHHHHHHHHhhhcCCC
Q 006374 584 EGSLYAKENILQDQKAEAGGKPSKFGTAIYATQFFTYVRRSVKRNGGL 631 (648)
Q Consensus 584 ~~~~~~a~ery~~~~~~~p~~~~~~~~~~iAs~~~~~~~~~~~~~~~~ 631 (648)
....... +.....-...++..+.+.....|+++|+|.++..+.+..+
T Consensus 573 ~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 619 (727)
T KOG0498|consen 573 EEELALE-EEESAIRGDDRGSKSLLRAGILASRFAANGRPPLHTAASR 619 (727)
T ss_pred cchhhhh-cchhhhccccccchhhhhcccccccccccCCCcccccccc
Confidence 6544332 1211222255667788999999999999999988776433
No 2
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=1e-63 Score=586.99 Aligned_cols=424 Identities=17% Similarity=0.250 Sum_probs=348.2
Q ss_pred cccCceecCCCcc---hHHHHHHHHHHHHhhcceeEEEEEEcCCcceeeecccceeehhhhHHHHHHhhhh-----hc--
Q 006374 40 NHINRIVDPRGPF---WNWIWLAVRIISTSLDPLFFYIFVVNDHKKCVDLDIKLAIIAISLRTIFDFFNII-----YS-- 109 (648)
Q Consensus 40 ~~~~~vi~P~s~~---Wd~~~~~~~l~~~~~~Pl~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~D~~f~~-----f~-- 109 (648)
+.+.++|+|.+++ ||.+++++++|+++++|+.++|. +......+.++|.++|++|++ |.
T Consensus 48 ~~~~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~F~-----------~~~~~~~~~~~d~i~~~~F~iDi~l~f~~a 116 (823)
T PLN03192 48 GSDGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAFL-----------NASPKRGLEIADNVVDLFFAVDIVLTFFVA 116 (823)
T ss_pred ccCCeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHee-----------CCCCCCCeeeHHHHHHHHHHHHHHhheeEE
Confidence 3567899999988 99999999999999999976542 111122456789999999998 22
Q ss_pred -----CCccccChhHhhhhhhhhHH-hHHHhhhcCCccchhheeeeccCCCCCccchhhHHHHHHHHHHhHHHHHHHHHH
Q 006374 110 -----SSTPHKHSRANAKKCFYLNS-FLKDLLSCLPIPQLVTSIIIITSKGSGFFPAMVWLKVVVIVQYVPRFYRIYRLY 183 (648)
Q Consensus 110 -----~~~~v~d~~~Ia~~~~Ylk~-F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~llrl~~l~~~l~rl~ri~rl~ 183 (648)
++.+|.||++|++ ||+++ |++|++|++|++++..... +........++||++| +.|+.|+.+++
T Consensus 117 y~d~~~~~lV~d~~~I~~--~Yl~~~f~~Dlis~lP~~~i~~~~~----~~~~~~~~~~~l~llr----l~Rl~ri~~~~ 186 (823)
T PLN03192 117 YIDPRTQLLVRDRKKIAV--RYLSTWFLMDVASTIPFQALAYLIT----GTVKLNLSYSLLGLLR----FWRLRRVKQLF 186 (823)
T ss_pred EEeCCCcEEEeCHHHHHH--HHHHHhHHHHHHHHhHHHHHHHHhc----CCccchHHHHHHHHHH----HHHHHHHHHHH
Confidence 3467899999999 99999 9999999999998754321 1111111234444444 34555555555
Q ss_pred HHHhhccchhhhhchHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhHHHHHhhhccCCcccccccccCCCCccccccccC
Q 006374 184 AVAESTSGILAQMKWVKSACCILIY-LLAAHVFGALWYFMAIERETECWKKACREHTECYQNSFHCYETVGNYTFLTGLC 262 (648)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~l~~~-ll~~H~~aC~wy~~~~~~~~~~w~~~c~~~~~c~~~~~~~~~~~~~~~W~~~~~ 262 (648)
..+++... .+.....+.+++.+ ++++||+||+||+++... ...+.+|+....
T Consensus 187 ~~le~~~~---~~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~------------------------~~~~~~Wi~~~~ 239 (823)
T PLN03192 187 TRLEKDIR---FSYFWIRCARLLSVTLFLVHCAGCLYYLIADRY------------------------PHQGKTWIGAVI 239 (823)
T ss_pred HHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------------------------CCCCCchHHHhh
Confidence 55554321 11112234555544 468999999999998310 123568986421
Q ss_pred CCCcCCCCccccchhHHHHhhccccccchHHHHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHH
Q 006374 263 PTMIQDTTMFNFGMFQEAIQSGMVEEKAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGN 342 (648)
Q Consensus 263 ~~~~~~~~~~~~g~y~~~l~~~~~~~~~~~~~Yi~slYwa~~TmttvGyGdi~p~~~~E~i~~i~~~i~G~~~fa~iig~ 342 (648)
+ + ..+.+++.+|++|+|||++|||||||||++|.|..|++|++++|++|+++|||+||+
T Consensus 240 ~---------~------------~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~ 298 (823)
T PLN03192 240 P---------N------------FRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGN 298 (823)
T ss_pred h---------c------------cccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 236689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhcccccchhhhHHHHHHHHhc
Q 006374 343 LTIYLQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLK 422 (648)
Q Consensus 343 i~~ii~~~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~~~~L~ 422 (648)
|++++.+.+.+..+|+++|+.+++||+++++|++||+||++|+++.|+. +..++++++++||++||.++..+++.+.++
T Consensus 299 i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~~-~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~ 377 (823)
T PLN03192 299 MTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRFKA-ESLNQQQLIDQLPKSICKSICQHLFLPVVE 377 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh-ccccHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999975 567889999999999999999999999999
Q ss_pred CCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEechhhhc
Q 006374 423 KVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATS 502 (648)
Q Consensus 423 ~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~l~~ 502 (648)
++++|++++++++.+++..++++.|+|||.|+.+||.++++|||.+|.|++...+++++.+ +..+++|++|||.+++.
T Consensus 378 ~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~~~~~e~~--l~~l~~Gd~FGE~~~l~ 455 (823)
T PLN03192 378 KVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDSEGEKERV--VGTLGCGDIFGEVGALC 455 (823)
T ss_pred hCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEecCCccee--eEEccCCCEecchHHhc
Confidence 9999999999999999999999999999999999999999999999999998766666544 78999999999998752
Q ss_pred cCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhchh
Q 006374 503 ALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQ 544 (648)
Q Consensus 503 ~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P~ 544 (648)
+ .+++++++|.++|+++.|++++|.++++++|+
T Consensus 456 ---~------~p~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~ 488 (823)
T PLN03192 456 ---C------RPQSFTFRTKTLSQLLRLKTSTLIEAMQTRQE 488 (823)
T ss_pred ---C------CCCCCeEEEcccEEEEEEEHHHHHHHHHHhhH
Confidence 1 23789999999999999999999999999964
No 3
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=5.8e-63 Score=509.12 Aligned_cols=410 Identities=20% Similarity=0.314 Sum_probs=345.6
Q ss_pred HHHHHHHHHhhcceeEEEEEEcCCcceeeecccceeehhhhHHHHHHhhhh---hc-------CCccccChhHhhhhhhh
Q 006374 57 WLAVRIISTSLDPLFFYIFVVNDHKKCVDLDIKLAIIAISLRTIFDFFNII---YS-------SSTPHKHSRANAKKCFY 126 (648)
Q Consensus 57 ~~~~~l~~~~~~Pl~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~D~~f~~---f~-------~~~~v~d~~~Ia~~~~Y 126 (648)
+.+.++|+.++++.++.|+-+. ......|..+|+++|++|++ ++ +|..|.|-++.++ ||
T Consensus 3 vs~~vLYN~~~li~r~~F~di~---------~~y~~~wl~ld~~~D~vyllDi~v~~R~gyleqGllV~~~~Kl~~--hY 71 (536)
T KOG0500|consen 3 VSLGVLYNMIVLIVRAAFDDIQ---------SSYLENWLPLDYLFDFVYLLDIIVRSRTGYLEQGLLVKDTSKLRK--HY 71 (536)
T ss_pred EEEehHHHHHHHHHHHHHHHHh---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhcCeeehhhHHHHH--HH
Confidence 3456788888888755443221 22223578999999999999 22 8999999999999 99
Q ss_pred hHH--hHHHhhhcCCccchhheeeeccCCCCCccchhhHHHHHHHHHHhHHHHHHHHHHHHHhhccchhhhhchH--HHH
Q 006374 127 LNS--FLKDLLSCLPIPQLVTSIIIITSKGSGFFPAMVWLKVVVIVQYVPRFYRIYRLYAVAESTSGILAQMKWV--KSA 202 (648)
Q Consensus 127 lk~--F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~llrl~~l~~~l~rl~ri~rl~~~~~~~~~~~~~~~~~--~~~ 202 (648)
+++ |.+|++|++|+|++.++. ++ ..+.| +.|++|++|++..+.+++. ++.++ ..+
T Consensus 72 ~~s~~f~lD~l~liP~D~l~~~~------~~-----~~~~r-------~nRllk~yRl~~F~~rTet---rT~~Pn~fri 130 (536)
T KOG0500|consen 72 VHSTQFKLDVLSLIPLDLLLFKD------GS-----ASLER-------LNRLLKIYRLFEFFDRTET---RTTYPNAFRI 130 (536)
T ss_pred HHhhhhhhhhhhhcchhHHhhcC------Cc-----chHHH-------HHHHHHHHHHHHHHHHhcc---ccCCchHHHH
Confidence 999 999999999999998853 22 12334 4567777777777777764 34343 346
Q ss_pred HHHHHHH-HHHHHHHHHHHHHhhhhhhHHHHHhhhccCCcccccccccCCCCccccccccCCCCcCCCCccccchhHHHH
Q 006374 203 CCILIYL-LAAHVFGALWYFMAIERETECWKKACREHTECYQNSFHCYETVGNYTFLTGLCPTMIQDTTMFNFGMFQEAI 281 (648)
Q Consensus 203 ~~l~~~l-l~~H~~aC~wy~~~~~~~~~~w~~~c~~~~~c~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~g~y~~~l 281 (648)
.+|+.++ +++||.||+||+++... +.++++|.+.. ..+|. |+
T Consensus 131 ~~lv~~~~ilfHWNaClYf~iS~~~------------------------g~~~d~wvY~~--i~d~~-----~~------ 173 (536)
T KOG0500|consen 131 SKLVHYCLILFHWNACLYFLISKAI------------------------GFTTDDWVYPK--INDPE-----FA------ 173 (536)
T ss_pred HHHHHHHHHHHHHhhHHHHhhhHhc------------------------CccccccccCC--ccCcc-----cc------
Confidence 7777665 68999999999998521 44567798742 11121 11
Q ss_pred hhccccccchHHHHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Q 006374 282 QSGMVEEKAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKA 361 (648)
Q Consensus 282 ~~~~~~~~~~~~~Yi~slYwa~~TmttvGyGdi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~ii~~~~~~~~~~~~~~ 361 (648)
.....++..+|+.|+||+..||||+|.- .+|.++.|.+|.|+-.++|+++||.++|++++++.++++...+|+++|
T Consensus 174 ---~c~~~n~~ReY~~S~YWStLTlTTiGe~-P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~m 249 (536)
T KOG0500|consen 174 ---TCDAGNLTREYLYSLYWSTLTLTTIGEQ-PPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAARTEFQAKM 249 (536)
T ss_pred ---ccchhHHHHHHHHHHHHHhhhhhhccCC-CCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHH
Confidence 1123468999999999999999999964 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhcccccchhhhHHHHHHHHhcCCcccccCCHHHHHHHHhc
Q 006374 362 REIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKC 441 (648)
Q Consensus 362 ~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~~~~L~~i~~F~~ls~~~l~~L~~~ 441 (648)
|.+++||+.|++|++++.||.+||+|.|.+.+..||+++++.||+.|+.+|+.+++.+.|+++++|+++.+.++.+++.+
T Consensus 250 DGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL~elVLk 329 (536)
T KOG0500|consen 250 DGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLK 329 (536)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHhcchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEechhhhccCCCCCCCCCCCcceEEEE
Q 006374 442 LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALIS 521 (648)
Q Consensus 442 l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A 521 (648)
+++..|.|||+|++.||.+++||+|.+|.+++..+||+.. ...+++|++|||.++++ +. ...++.+|++++++
T Consensus 330 lk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~dDg~t~----~~~L~~G~~FGEisIln-i~--g~~~gNRRtanvrS 402 (536)
T KOG0500|consen 330 LKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVADDGVTV----FVTLKAGSVFGEISILN-IK--GNKNGNRRTANVRS 402 (536)
T ss_pred hcceeeCCCCeEEecCcccceEEEEEccEEEEEecCCcEE----EEEecCCceeeeeEEEE-Ec--CcccCCcceeeeee
Confidence 9999999999999999999999999999999999777653 68999999999999864 33 33466789999999
Q ss_pred eceEEEEEEeHHHHHHHHHhchhhh
Q 006374 522 VTNVEAFAINTDDLRAIVYQYWQHR 546 (648)
Q Consensus 522 ~~~~~ll~Ls~~df~~ll~~~P~~~ 546 (648)
+..|++++|+++|+.+++++||+.+
T Consensus 403 vGYSDlfvLskdDl~~aL~eYP~a~ 427 (536)
T KOG0500|consen 403 VGYSDLFVLSKDDLWEALSEYPDAR 427 (536)
T ss_pred eccceeeEeeHHHHHHHHHhCCHHH
Confidence 9999999999999999999999655
No 4
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=3.6e-58 Score=478.73 Aligned_cols=411 Identities=18% Similarity=0.300 Sum_probs=354.0
Q ss_pred ccCceecCCC-cc---hHHHHHHHHHHHHhhcceeEEEEEEcCCcceeeecccceeehhhhHHHHHHhhhh----hc---
Q 006374 41 HINRIVDPRG-PF---WNWIWLAVRIISTSLDPLFFYIFVVNDHKKCVDLDIKLAIIAISLRTIFDFFNII----YS--- 109 (648)
Q Consensus 41 ~~~~vi~P~s-~~---Wd~~~~~~~l~~~~~~Pl~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~D~~f~~----f~--- 109 (648)
..+..|||.. ++ |-.++.++..|++|++|++..||+-+.-+ .-.|.+.|+++|++|++ |+
T Consensus 215 ~~~~sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT~dN---------~~~Wli~Dy~cDiIYllDmlf~q~Rl 285 (815)
T KOG0499|consen 215 KLPNSIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQTADN---------IHYWLIADYICDIIYLLDMLFIQPRL 285 (815)
T ss_pred CCCcccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCcccccc---------chhhhhHHHHhhHHHHHHHhhhhhhh
Confidence 4467899998 55 99999999999999999999988754322 22578999999999999 22
Q ss_pred ----CCccccChhHhhhhhhhhHH--hHHHhhhcCCccchhheeeeccCCCCCccchhhHHHHHHHHHHhHHHHHHHHHH
Q 006374 110 ----SSTPHKHSRANAKKCFYLNS--FLKDLLSCLPIPQLVTSIIIITSKGSGFFPAMVWLKVVVIVQYVPRFYRIYRLY 183 (648)
Q Consensus 110 ----~~~~v~d~~~Ia~~~~Ylk~--F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~llrl~~l~~~l~rl~ri~rl~ 183 (648)
.|.+|.|.+...+ ||+++ |-+|++|++|+|++++.+ +. ..++| ++|++++...+
T Consensus 286 ~fvrgG~~ik~kndtrk--~Yl~sr~FklDllsiLPldllY~~~-----G~------~p~wR-------~~R~lK~~sF~ 345 (815)
T KOG0499|consen 286 QFVRGGDIIKDKNDTRK--HYLTSRKFKLDLLSILPLDLLYLFF-----GF------NPMWR-------ANRMLKYTSFF 345 (815)
T ss_pred eeeeCceEEEechHHHH--HHHHhhhhhhhHHhhhhHHHHHHHh-----cc------chhhh-------hhhHHHHHHHH
Confidence 7889999999999 99999 999999999999998854 22 23444 45555554444
Q ss_pred HHHhhccchhhhhchHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhHHHHHhhhccCCcccccccccCCCCccccccccC
Q 006374 184 AVAESTSGILAQMKWVKSACCILIYL-LAAHVFGALWYFMAIERETECWKKACREHTECYQNSFHCYETVGNYTFLTGLC 262 (648)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~l~~~l-l~~H~~aC~wy~~~~~~~~~~w~~~c~~~~~c~~~~~~~~~~~~~~~W~~~~~ 262 (648)
........++ ..+++.++.+.+.|| ++.|+.||+||+.+..+ +.+.+.|+.+-
T Consensus 346 e~~~~Le~i~-s~~y~~RV~rT~~YmlyilHinacvYY~~Sayq------------------------glG~~rWVydg- 399 (815)
T KOG0499|consen 346 EFNHHLESIM-SKAYIYRVIRTTGYLLYILHINACVYYWASAYQ------------------------GLGTTRWVYDG- 399 (815)
T ss_pred HHHHHHHHHh-cchhhhhhHHHHHHHHHHHhhhHHHHHHHHhhc------------------------ccccceeEEcC-
Confidence 3333333332 345666677777776 58999999999987432 45678898731
Q ss_pred CCCcCCCCccccchhHHHHhhccccccchHHHHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHH
Q 006374 263 PTMIQDTTMFNFGMFQEAIQSGMVEEKAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGN 342 (648)
Q Consensus 263 ~~~~~~~~~~~~g~y~~~l~~~~~~~~~~~~~Yi~slYwa~~TmttvGyGdi~p~~~~E~i~~i~~~i~G~~~fa~iig~ 342 (648)
-...|++|+|||+.|++|+| |...|+|..|.+|..+--+.|+++||.+||+
T Consensus 400 ----------------------------~Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvFslliGQ 450 (815)
T KOG0499|consen 400 ----------------------------EGNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVFSLLIGQ 450 (815)
T ss_pred ----------------------------CCCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 14579999999999999999 6778999999999999999999999999999
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhcccccchhhhHHHHHHHHhc
Q 006374 343 LTIYLQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLK 422 (648)
Q Consensus 343 i~~ii~~~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~~~~L~ 422 (648)
|-.++++.+..+++|++.||+.-.||+..++|+++|+||+.+|+|.|+.++..||.++++.||..||.+++.+++-..|.
T Consensus 451 mRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~LP~klq~dlAi~V~y~~lS 530 (815)
T KOG0499|consen 451 MRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLKTLPTKLQLDLAIDVNYSILS 530 (815)
T ss_pred HHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHHhcchhheeeeeEEeehhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEechhhhc
Q 006374 423 KVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATS 502 (648)
Q Consensus 423 ~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~l~~ 502 (648)
++.+|++++.+.+..++.+++.+.|.|||++++.||++.+||+|..|+|++....+|+ .++..+.+|+.|||++++
T Consensus 531 KVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGGp~~~---~Vl~tL~~GsVFGEISLL- 606 (815)
T KOG0499|consen 531 KVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGGPDGT---KVLVTLKAGSVFGEISLL- 606 (815)
T ss_pred HHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEecCCCCC---EEEEEecccceeeeeeee-
Confidence 9999999999999999999999999999999999999999999999999998755555 347999999999999985
Q ss_pred cCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhchh
Q 006374 503 ALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQ 544 (648)
Q Consensus 503 ~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P~ 544 (648)
+.. ++.+|+++|+|.+.|.++.|+++|+.+++..||+
T Consensus 607 aig-----G~nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP~ 643 (815)
T KOG0499|consen 607 AIG-----GGNRRTANVVAHGFANLFVLDKKDLNEILVHYPD 643 (815)
T ss_pred eec-----CCCccchhhhhcccceeeEecHhHHHHHHHhCcc
Confidence 222 3457999999999999999999999999999963
No 5
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-58 Score=478.09 Aligned_cols=439 Identities=18% Similarity=0.296 Sum_probs=359.1
Q ss_pred cccCceecCCCcc---hHHHHHHHHHHHHhhcceeEEEEEEcCCcceeeecccceeehhhhHHHHHHhhhh-----hc--
Q 006374 40 NHINRIVDPRGPF---WNWIWLAVRIISTSLDPLFFYIFVVNDHKKCVDLDIKLAIIAISLRTIFDFFNII-----YS-- 109 (648)
Q Consensus 40 ~~~~~vi~P~s~~---Wd~~~~~~~l~~~~~~Pl~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~D~~f~~-----f~-- 109 (648)
+.++.||...+.| ||++++++.+|+++++|+-++ |.........|.++|.++|++|++ |+
T Consensus 204 KTpPHIiLHYcaFKt~WDWvIL~LTFYTAimVPyNva----------FKnk~~~~vs~lvvDSiVDVIF~vDIvLNFHTT 273 (971)
T KOG0501|consen 204 KTPPHIILHYCAFKTIWDWVILILTFYTAIMVPYNVA----------FKNKQRNNVSWLVVDSIVDVIFFVDIVLNFHTT 273 (971)
T ss_pred CCCCeEEEeeehhhhHHHHHHHHHHHHHHheeeeeee----------ecccccCceeEEEecchhhhhhhhhhhhhccee
Confidence 5667889999999 999999999999999996543 333332345678899999999999 55
Q ss_pred ----CCccccChhHhhhhhhhhHH-hHHHhhhcCCccchhheeeeccCCCCCccchhhHHHHHHHHHHhHHHHHHHHHHH
Q 006374 110 ----SSTPHKHSRANAKKCFYLNS-FLKDLLSCLPIPQLVTSIIIITSKGSGFFPAMVWLKVVVIVQYVPRFYRIYRLYA 184 (648)
Q Consensus 110 ----~~~~v~d~~~Ia~~~~Ylk~-F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~llrl~~l~~~l~rl~ri~rl~~ 184 (648)
.|++|.||+.|+. +|+|+ |+||++||+|+|.+..+--. ..+ .-..+..|+ +.||+|+.|+.+
T Consensus 274 FVGPgGEVvsdPkvIRm--NYlKsWFvIDLLSCLPYDi~naF~~~--deg--I~SLFSaLK-------VVRLLRLGRVaR 340 (971)
T KOG0501|consen 274 FVGPGGEVVSDPKVIRM--NYLKSWFVIDLLSCLPYDIFNAFERD--DEG--IGSLFSALK-------VVRLLRLGRVAR 340 (971)
T ss_pred eecCCCceecChhHHhH--HHHHHHHHHHHHhcccHHHHHHhhcc--ccc--HHHHHHHHH-------HHHHHHHHHHHH
Confidence 6899999999999 99999 99999999999988764211 111 111233444 457777888888
Q ss_pred HHhhccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhccCCcccccccccCCCCccccccccCCC
Q 006374 185 VAESTSGILAQMKWVKSACCILIYLLAAHVFGALWYFMAIERETECWKKACREHTECYQNSFHCYETVGNYTFLTGLCPT 264 (648)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~l~~~ll~~H~~aC~wy~~~~~~~~~~w~~~c~~~~~c~~~~~~~~~~~~~~~W~~~~~~~ 264 (648)
++++...+ .-+..++.+..|++++||+||+||.+|..+. ..+-......++|+......
T Consensus 341 KLD~YlEY----GAA~LvLLlC~y~lvAHWlACiWysIGd~ev-----------------~~~~~n~i~~dsWL~kLa~~ 399 (971)
T KOG0501|consen 341 KLDHYLEY----GAAVLVLLLCVYGLVAHWLACIWYSIGDYEV-----------------RDEMDNTIQPDSWLWKLAND 399 (971)
T ss_pred HHHHHHHh----hHHHHHHHHHHHHHHHHHHHHhheeccchhe-----------------ecccccccccchHHHHHHhh
Confidence 88765432 1122334455778999999999999994211 00000123457898765432
Q ss_pred CcCCCCccccchhHHHHhhcc-ccccchHHHHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 006374 265 MIQDTTMFNFGMFQEAIQSGM-VEEKAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNL 343 (648)
Q Consensus 265 ~~~~~~~~~~g~y~~~l~~~~-~~~~~~~~~Yi~slYwa~~TmttvGyGdi~p~~~~E~i~~i~~~i~G~~~fa~iig~i 343 (648)
-.+.++|..- ..|. +..++-...|+.|+||.++.|||||+|.|.|.|+.|++|++.+|++|+++||.++|++
T Consensus 400 ---~~tpY~~~~s----~~~~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~v 472 (971)
T KOG0501|consen 400 ---IGTPYNYNLS----NKGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHV 472 (971)
T ss_pred ---cCCCceeccC----CCceeecCCcccceehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 1233333200 0111 2355777899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhcccccchhhhHHHHHHHHhcC
Q 006374 344 TIYLQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLKK 423 (648)
Q Consensus 344 ~~ii~~~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~~~~L~~ 423 (648)
+.|++++.+....|++.++.+.+||+-.++|+.|.+||.+|.--.|..++|+|.+++|.-.|+++|.+|..|+..+....
T Consensus 473 TTI~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVHLNRKVFnE 552 (971)
T KOG0501|consen 473 TTIIQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVHLNRKVFNE 552 (971)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeeecchhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEechhhhcc
Q 006374 424 VPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSA 503 (648)
Q Consensus 424 i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~ 503 (648)
+|-|+-.++..+.+|+..++..+..|||.|++.||..+.++||++|.+++..+|+ +++.++.||.||+..+-
T Consensus 553 HpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDDE------VVAILGKGDVFGD~FWK-- 624 (971)
T KOG0501|consen 553 HPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDDE------VVAILGKGDVFGDEFWK-- 624 (971)
T ss_pred CcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecCc------EEEEeecCccchhHHhh--
Confidence 9999999999999999999999999999999999999999999999999988553 26999999999998541
Q ss_pred CCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhc
Q 006374 504 LDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 542 (648)
Q Consensus 504 l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~ 542 (648)
+. ....+.++|+|+|+|.+..|.++.++++++-|
T Consensus 625 -~~----t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFY 658 (971)
T KOG0501|consen 625 -EN----TLGQSAANVRALTYCDLHMIKRDKLLKVLDFY 658 (971)
T ss_pred -hh----hhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHH
Confidence 11 22347889999999999999999999999988
No 6
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.71 E-value=3.5e-16 Score=157.93 Aligned_cols=184 Identities=12% Similarity=0.133 Sum_probs=147.8
Q ss_pred HHHhcCCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEec
Q 006374 418 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 497 (648)
Q Consensus 418 ~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe 497 (648)
.+.++.+++|..+++++++.+....+.+.|++|+.|+++||.++++|+|.+|.|+++..++|++.+ +..+++|++||+
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~--i~~~~~g~~~g~ 83 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETT--LAILRPVSTFIL 83 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEE--EEEeCCCchhhh
Confidence 458899999999999999999999999999999999999999999999999999999865555544 799999999999
Q ss_pred hhhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhchhhhhhhhhhHHHHhhhchhhhhhHHhHHHHHHHH
Q 006374 498 ELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCR 577 (648)
Q Consensus 498 ~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~ 577 (648)
.+++ ++. ++.++++|+++|+++.|++++|.+++.++ |.+.......+...+..
T Consensus 84 ~~~~---~~~------~~~~~~~A~~~~~~~~i~~~~~~~l~~~~------------------p~l~~~~~~~l~~~~~~ 136 (236)
T PRK09392 84 AAVV---LDA------PYLMSARTLTRSRVLMIPAELVREAMSED------------------PGFMRAVVFELAGCYRG 136 (236)
T ss_pred HHHh---CCC------CCceEEEEcCceEEEEEeHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHH
Confidence 8864 222 37889999999999999999999999999 44555545555566777
Q ss_pred HHhhhhhhhHHHHHhhhhhhhhhc-----CCCCCcchh--HHHHHHHH------HHHHHHhhhcCC
Q 006374 578 YKKRKLEGSLYAKENILQDQKAEA-----GGKPSKFGT--AIYATQFF------TYVRRSVKRNGG 630 (648)
Q Consensus 578 ~~~r~~~~~~~~a~ery~~~~~~~-----p~~~~~~~~--~~iAs~~~------~~~~~~~~~~~~ 630 (648)
..++..+....++++|+..++-.. ++...++|+ .+||+.+. +.+++-.++.|.
T Consensus 137 ~~~~~~~~~~~~~~~Rla~~Ll~~~~~~~~~~~~~i~~t~~~iA~~lG~tretvsR~l~~L~~~gl 202 (236)
T PRK09392 137 LVKSLKNQKLRSSAERLANYLLKQSLRQGGADVVTLPYEKRVLASYLGMTPENLSRAFAALASHGV 202 (236)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccccCCCcEEEeeCCHHHHHHHhCCChhHHHHHHHHHHhCCe
Confidence 778888888899999999877532 233455674 66988764 333444455554
No 7
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.66 E-value=8.5e-15 Score=145.04 Aligned_cols=176 Identities=12% Similarity=0.129 Sum_probs=134.6
Q ss_pred ccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEec-CCeeeeEEEEecCCCCeEechhhhccCCC
Q 006374 428 QMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDP 506 (648)
Q Consensus 428 ~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fGe~~l~~~l~~ 506 (648)
+++|+++++.++..++.+.|+||++|+.+|++++.+|+|.+|.++++..+ +|++.. +..+++|++||+..++ .
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~~---~- 79 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLF---E- 79 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEEeehhhc---c-
Confidence 47999999999999999999999999999999999999999999998743 455544 7899999999998763 2
Q ss_pred CCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhchhhhhhhhhhHHHHhhhchhhh-hhHHhHHHHHHHHHHhhhhhh
Q 006374 507 DPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWR-TSKACVIQAAWCRYKKRKLEG 585 (648)
Q Consensus 507 ~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~-~~~~~~~e~~~~~~~~r~~~~ 585 (648)
..+++.++++|.++|+++.|++++|.+++.++ |.+. .+.+.+.+.. ....++....
T Consensus 80 ----~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~~~~~l-~~~~~~~~~~ 136 (211)
T PRK11753 80 ----EGQERSAWVRAKTACEVAEISYKKFRQLIQVN------------------PDILMALSAQMARRL-QNTSRKVGDL 136 (211)
T ss_pred ----CCCCceEEEEEcCcEEEEEEcHHHHHHHHHHC------------------HHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 11236789999999999999999999999999 4443 3344444443 5566677778
Q ss_pred hHHHHHhhhhhhhh---hcCC-------CCCcchhHHHHHHHHH------HHHHHhhhcCCCC
Q 006374 586 SLYAKENILQDQKA---EAGG-------KPSKFGTAIYATQFFT------YVRRSVKRNGGLP 632 (648)
Q Consensus 586 ~~~~a~ery~~~~~---~~p~-------~~~~~~~~~iAs~~~~------~~~~~~~~~~~~~ 632 (648)
...++++|+..++. +.|+ +..+++++.||+.+.. .+++..++.|...
T Consensus 137 ~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lG~tr~tvsR~l~~l~~~gii~ 199 (211)
T PRK11753 137 AFLDVTGRIAQTLLDLAKQPDAMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKMLEDQGLIS 199 (211)
T ss_pred HhcChhhHHHHHHHHHHHhcCCcCCCCceecCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 88899999876432 2222 3347899999998853 3344445555433
No 8
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.60 E-value=2.6e-14 Score=144.14 Aligned_cols=182 Identities=12% Similarity=0.077 Sum_probs=140.4
Q ss_pred hcCCcccccCCHHHHHHHHhcCee-EEecCCeEEEccCCCcCeEEEEEeeeEEEEEec-CCeeeeEEEEecCCCCeEech
Q 006374 421 LKKVPMFQMMGKSILSEMCKCLKP-VLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEE 498 (648)
Q Consensus 421 L~~i~~F~~ls~~~l~~L~~~l~~-~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fGe~ 498 (648)
+++.+.|.++++++++.|....+. +.|+||+.|+++||+++++|+|.+|.|+++..+ +|++.+ +.++.+|++||+.
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i--~~~~~~gd~~g~~ 92 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQI--TGFHLAGDLVGFD 92 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEE--EEeccCCceeccc
Confidence 455555557999999999988864 679999999999999999999999999999853 455544 6888999999986
Q ss_pred hhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhchhhhhhhhhhHHHHhhhchhhhhhHHhHHHHHHHHH
Q 006374 499 LATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRY 578 (648)
Q Consensus 499 ~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~ 578 (648)
+++ .. ++..+++|+++|+++.|++++|++++.++ |++.......+.......
T Consensus 93 ~~~---~~-------~~~~~~~a~~~~~i~~ip~~~f~~l~~~~------------------p~~~~~~~~~~~~~~~~~ 144 (235)
T PRK11161 93 AIG---SG-------QHPSFAQALETSMVCEIPFETLDDLSGKM------------------PKLRQQIMRLMSGEIKGD 144 (235)
T ss_pred ccc---CC-------CCcceEEEeccEEEEEEEHHHHHHHHHHC------------------hHHHHHHHHHHHHHHHHH
Confidence 542 11 13458999999999999999999999999 555555555555666677
Q ss_pred HhhhhhhhHHHHHhhhhhhhhhcCC-----------CCCcchhHHHHHHHH------HHHHHHhhhcCCCC
Q 006374 579 KKRKLEGSLYAKENILQDQKAEAGG-----------KPSKFGTAIYATQFF------TYVRRSVKRNGGLP 632 (648)
Q Consensus 579 ~~r~~~~~~~~a~ery~~~~~~~p~-----------~~~~~~~~~iAs~~~------~~~~~~~~~~~~~~ 632 (648)
.++...+...++++|+..++.+.++ +...+++.+||+.+. +.+++..++.|...
T Consensus 145 ~~~~~~l~~~~~~~Rla~~L~~l~~~~~~~~~~~~~~~~~lt~~~iA~~lG~sr~tvsR~l~~l~~~g~I~ 215 (235)
T PRK11161 145 QEMILLLSKKNAEERLAAFIYNLSRRFAQRGFSPREFRLTMTRGDIGNYLGLTVETISRLLGRFQKSGMLA 215 (235)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCceeEccccHHHHHHHhCCcHHHHHHHHHHHHHCCCEE
Confidence 7777777888999999888765432 224678889999874 44555666666543
No 9
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.58 E-value=5.3e-15 Score=155.89 Aligned_cols=192 Identities=16% Similarity=0.164 Sum_probs=111.8
Q ss_pred eehhhhHHHHHHhhhh-hcCCccccChhHhhhhhhhhHH--hHHHhhhcCCccchhheeeeccCCCCCccch-hhHHHHH
Q 006374 92 IIAISLRTIFDFFNII-YSSSTPHKHSRANAKKCFYLNS--FLKDLLSCLPIPQLVTSIIIITSKGSGFFPA-MVWLKVV 167 (648)
Q Consensus 92 ~~~~i~~~~~D~~f~~-f~~~~~v~d~~~Ia~~~~Ylk~--F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~-~~llrl~ 167 (648)
..+.+++.++-.+|.+ |- -+.+..|.+. +++|+ -+||++|++||++=........ ++...+.. ..++|++
T Consensus 240 p~l~~vE~vCi~WFT~E~l-lR~~~~P~k~----~F~k~pLNIIDllAIlPFYielll~~~~~-~~~~~l~~~~~vvrvl 313 (477)
T KOG3713|consen 240 PILTYVETVCIAWFTFEYL-LRFLVAPNKL----EFFKSPLNIIDLLAILPFYLELLLTLFGG-ESLKELENAGLVVRVL 313 (477)
T ss_pred CchHHHHHHHHHHHHHHHH-HHHHcCchHH----HHHhCcchHHHHHHHHHHHHHHHHHHhcc-chHHHHhhhhhhHHHH
Confidence 3577888888888887 21 1223344443 67888 8999999999875432211111 11112211 1334444
Q ss_pred HHHHHhHHHHHHHHHHHHHhhccchhhhhchHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhHHHHHhhhccCCcccccc
Q 006374 168 VIVQYVPRFYRIYRLYAVAESTSGILAQMKWVKSACCILIYL-LAAHVFGALWYFMAIERETECWKKACREHTECYQNSF 246 (648)
Q Consensus 168 ~l~~~l~rl~ri~rl~~~~~~~~~~~~~~~~~~~~~~l~~~l-l~~H~~aC~wy~~~~~~~~~~w~~~c~~~~~c~~~~~ 246 (648)
|++| +.|++|+-|.+.-++.....++++... +..|++|+ +..-+++-+-|++-.+
T Consensus 314 R~lR-I~RI~KLaRhS~GLr~lg~Tlr~S~~E--lglLllfL~~GI~iFStlvY~~Ek~--------------------- 369 (477)
T KOG3713|consen 314 RVLR-ILRIFKLARHSTGLRTLGLTLRRSYRE--LGLLLLFLAVGIVIFSTLVYFAEKD--------------------- 369 (477)
T ss_pred HHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhc---------------------
Confidence 3222 334444444443343332223322211 22233443 4455666666665211
Q ss_pred cccCCCCccccccccCCCCcCCCCccccchhHHHHhhccccccchHHHHHHHHHhhhhccccccccCcccCchhHHHHHH
Q 006374 247 HCYETVGNYTFLTGLCPTMIQDTTMFNFGMFQEAIQSGMVEEKAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLAS 326 (648)
Q Consensus 247 ~~~~~~~~~~W~~~~~~~~~~~~~~~~~g~y~~~l~~~~~~~~~~~~~Yi~slYwa~~TmttvGyGdi~p~~~~E~i~~i 326 (648)
+++ + .++.--.|+|||++|||||||||++|.|...++++.
T Consensus 370 ----~~~----------------~--------------------~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas 409 (477)
T KOG3713|consen 370 ----EPD----------------T--------------------KFTSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVAS 409 (477)
T ss_pred ----CCC----------------C--------------------CCccccchhheeeEEEeeecccCccccccchHHHHH
Confidence 000 0 022223799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc
Q 006374 327 FIIIASLLLLLLVLGNLTIYLQSGTIK 353 (648)
Q Consensus 327 ~~~i~G~~~fa~iig~i~~ii~~~~~~ 353 (648)
.+.+.|+++.|+-|..|-+-+......
T Consensus 410 ~cil~GVLvlAlPItiIv~nF~~~y~~ 436 (477)
T KOG3713|consen 410 LCILCGVLVLALPITIIVNNFSMYYSE 436 (477)
T ss_pred HHHHHhHHHhhcchHhHhhhHHHHHHH
Confidence 999999999998877666555544433
No 10
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.54 E-value=1.5e-13 Score=137.80 Aligned_cols=179 Identities=17% Similarity=0.135 Sum_probs=126.9
Q ss_pred CCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEec-CCeeeeEEEEecCCCCeEechhhhccCCCCC
Q 006374 430 MGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDPDP 508 (648)
Q Consensus 430 ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~ 508 (648)
+.+-+..++....+.+.|++|+.|+.+||+++++|||.+|.|+++..+ +|++.+ +..+.+|++||+.+++ ++
T Consensus 19 ~~~~~~~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~--~~~~~~g~~~G~~~~~---~~-- 91 (226)
T PRK10402 19 FKDCFSFDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSL--IDFFAAPCFIGEIELI---DK-- 91 (226)
T ss_pred hhhcCCHHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEee--eeecCCCCeEEeehhh---cC--
Confidence 333344467888999999999999999999999999999999999743 455544 7899999999998763 22
Q ss_pred CCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhchhhhhhhhhhHHHHhhhchhhhhhHHhHHHHHHHHHHhhhhhhhHH
Q 006374 509 LSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLY 588 (648)
Q Consensus 509 ~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~~~r~~~~~~~ 588 (648)
.++.++++|+++|+++.+++++|.+++.++| .-+..+.+.+.++. .+...+.......
T Consensus 92 ----~~~~~~~~A~~~~~i~~i~~~~~~~ll~~~p-----------------~~~~~~~~~l~~~~-~~~~~~~~~~~~~ 149 (226)
T PRK10402 92 ----DHETKAVQAIEECWCLALPMKDCRPLLLNDA-----------------LFLRKLCKFLSHKN-YRNIVSLTQNQSF 149 (226)
T ss_pred ----CCCCccEEEeccEEEEEEEHHHHHHHHhcCH-----------------HHHHHHHHHHHHHH-HHHHHHHHHhccC
Confidence 2378899999999999999999999999994 12222333333332 2333344444456
Q ss_pred HHHhhhhhhhhhc--CCCCCcchhHHHHHHHH------HHHHHHhhhcCCCC--CCcccc
Q 006374 589 AKENILQDQKAEA--GGKPSKFGTAIYATQFF------TYVRRSVKRNGGLP--GGRVNI 638 (648)
Q Consensus 589 ~a~ery~~~~~~~--p~~~~~~~~~~iAs~~~------~~~~~~~~~~~~~~--~~~~~~ 638 (648)
++++|+..++... ++. ...++..||+.+. +.++....+.|... +++|.|
T Consensus 150 ~~~~Rla~~L~~~~~~~~-~~~t~~~lA~~lG~sretvsR~L~~L~~~G~I~~~~~~i~I 208 (226)
T PRK10402 150 PLENRLAAFILLTQEGDL-YHEKHTQAAEYLGVSYRHLLYVLAQFIQDGYLKKSKRGYLI 208 (226)
T ss_pred hHHHHHHHHHHhcccCCc-ccchHHHHHHHHCCcHHHHHHHHHHHHHCCCEEeeCCEEEE
Confidence 8999998877542 222 2357899999886 34455556677433 333444
No 11
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.49 E-value=5.7e-13 Score=133.94 Aligned_cols=165 Identities=12% Similarity=0.065 Sum_probs=129.3
Q ss_pred HHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEec-CCeeeeEEEEecCCCCeEechhhhccCCCCCCCCCCC
Q 006374 436 SEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPH 514 (648)
Q Consensus 436 ~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~ 514 (648)
..++...+.+.|++|++|+.+||+++++|||.+|.|+++..+ +|++.+ +..+.+|++||+..- .+
T Consensus 32 ~~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i--~~~~~~Gd~fG~~~~------------~~ 97 (230)
T PRK09391 32 GHAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQI--GAFHLPGDVFGLESG------------ST 97 (230)
T ss_pred ccccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEEecCCceecccCC------------Cc
Confidence 345667789999999999999999999999999999999743 455543 688999999996421 12
Q ss_pred cceEEEEeceEEEEEEeHHHHHHHHHhchhhhhhhhhhHHHHhhhchhhhhhHHhHHHHHHHHHHhhhhhhhHHHHHhhh
Q 006374 515 SNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLYAKENIL 594 (648)
Q Consensus 515 ~~~tv~A~~~~~ll~Ls~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~~~r~~~~~~~~a~ery 594 (648)
+.++++|+++|+++.|++++|++++.++ |++..+....+...+....++...+...++++|+
T Consensus 98 ~~~~~~A~~ds~v~~i~~~~f~~l~~~~------------------p~l~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rl 159 (230)
T PRK09391 98 HRFTAEAIVDTTVRLIKRRSLEQAAATD------------------VDVARALLSLTAGGLRHAQDHMLLLGRKTAMERV 159 (230)
T ss_pred CCeEEEEcCceEEEEEEHHHHHHHHhhC------------------hHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 6789999999999999999999999999 5555555556666666777888888888999999
Q ss_pred hhhhhhc-------CCCCCcchhHHHHHHHH------HHHHHHhhhcCCCC
Q 006374 595 QDQKAEA-------GGKPSKFGTAIYATQFF------TYVRRSVKRNGGLP 632 (648)
Q Consensus 595 ~~~~~~~-------p~~~~~~~~~~iAs~~~------~~~~~~~~~~~~~~ 632 (648)
.+++... +.+...+++.+||+.+. +.+++..++.|...
T Consensus 160 a~~Ll~l~~~~g~~~~i~i~lt~~~IA~~lGisretlsR~L~~L~~~GlI~ 210 (230)
T PRK09391 160 AAFLLEMDERLGGAGMMALPMSRRDIADYLGLTIETVSRALSQLQDRGLIG 210 (230)
T ss_pred HHHHHHHHHHhCCCCEEEecCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEE
Confidence 8876542 22345678899999884 45566667777664
No 12
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.43 E-value=2.8e-12 Score=125.09 Aligned_cols=122 Identities=11% Similarity=0.091 Sum_probs=87.5
Q ss_pred CeEEEccCCCcCeEEEEEeeeEEEEEe-cCCeeeeEEEEecCCCCeEechhhhccCCCCCCCCCCCcceEEEEeceEEEE
Q 006374 450 ECCIVKEGDPICEMFFITQGTLLTTTT-NGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAF 528 (648)
Q Consensus 450 ge~I~~eGd~~~~lyfI~~G~v~v~~~-~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll 528 (648)
|+.|+++||+++++|+|.+|.|+++.. ++|++.+ +..+++|++||+.+++ .+.+ .++.++++|.++|+++
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~--l~~~~~g~~~G~~~~~---~~~~----~~~~~~~~A~~~~~v~ 71 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEIT--VALLRENSVFGVLSLI---TGHR----SDRFYHAVAFTRVELL 71 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEee--eEEccCCCEeeeeeec---cCCC----CccceEEEEecceEEE
Confidence 789999999999999999999999974 3456654 7999999999998763 2111 1245789999999999
Q ss_pred EEeHHHHHHHHHhchhhhhhhhhhHHHHhhhchhhhhhHHhHHHHHHHHHHhhhhhhhHHHHHhhhhhhh
Q 006374 529 AINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLYAKENILQDQK 598 (648)
Q Consensus 529 ~Ls~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~~~r~~~~~~~~a~ery~~~~ 598 (648)
.+++++|++++.++| .+.......+........++.......++++|+..++
T Consensus 72 ~i~~~~~~~l~~~~p------------------~l~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rla~~L 123 (193)
T TIGR03697 72 AVPIEQVEKAIEEDP------------------DLSMLLLQGLSSRILQTEMMIETLAHRDMGSRLVSFL 123 (193)
T ss_pred EeeHHHHHHHHHHCh------------------HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999999993 2222222222333344445555555566666655443
No 13
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.41 E-value=9.4e-12 Score=122.63 Aligned_cols=167 Identities=17% Similarity=0.216 Sum_probs=124.8
Q ss_pred cCCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEec-CCeeeeEEEEecCCCCeEechhh
Q 006374 422 KKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELA 500 (648)
Q Consensus 422 ~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fGe~~l 500 (648)
...+.|...+++....+....+.+.+++|+.|+.+||+++.+|+|.+|.++++..+ +|++.. +..+++|++||+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~g~~fg~~~l 80 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREII--LGFLGPGDFFGELAL 80 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEE--EEEecCCchhhhHHH
Confidence 34556666788888888889999999999999999999999999999999999844 455544 789999999999987
Q ss_pred hccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhchhhhhhhhhhHHHHhhhchhhhhhHHhHHHHHHHHHHh
Q 006374 501 TSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKK 580 (648)
Q Consensus 501 ~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~~~ 580 (648)
+ ... ++.++++|+++|+++.+++++|.+++.+. |.+.......+.+.......
T Consensus 81 ~---~~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------------p~l~~~l~~~~~~~l~~~~~ 133 (214)
T COG0664 81 L---GGD------PRSASAVALTDVEVLEIPRKDFLELLAES------------------PKLALALLRLLARRLRQALE 133 (214)
T ss_pred h---cCC------CccceEEEcceEEEEEecHHHHHHHHhhC------------------cHHHHHHHHHHHHHHHHHHH
Confidence 4 211 37889999999999999999999998885 33333333444445555555
Q ss_pred hhhhhhHHHHHhhhhhhhhhcCC-----------CCCcchhHHHHHHH
Q 006374 581 RKLEGSLYAKENILQDQKAEAGG-----------KPSKFGTAIYATQF 617 (648)
Q Consensus 581 r~~~~~~~~a~ery~~~~~~~p~-----------~~~~~~~~~iAs~~ 617 (648)
+........+++|....+..-.. +...++.+.+|+.+
T Consensus 134 ~~~~~~~~~~~~r~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ia~~~ 181 (214)
T COG0664 134 RLSLLARKDVEERLARFLLNLGRRLGIATEDGILIPLPLTHKDLAEYL 181 (214)
T ss_pred HHHHHhhccHHHHHHHHHHHHhhccCCCCCCCcEEeccCCHHHHHHHh
Confidence 66655666777777655433221 23567788888655
No 14
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.37 E-value=8.4e-12 Score=109.52 Aligned_cols=107 Identities=20% Similarity=0.406 Sum_probs=93.7
Q ss_pred ccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEec-CCeeeeEEEEecCCCCeEechhhhccC
Q 006374 426 MFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSAL 504 (648)
Q Consensus 426 ~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fGe~~l~~~l 504 (648)
+|..++++.+..++..++.+.+++|+.|+.+|++++++|+|.+|.++++..+ +|++.. +..+.+|++||+..++
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~~--- 75 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQI--VGFLGPGDLFGELALL--- 75 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEecCCccCcChHHHh---
Confidence 4678999999999999999999999999999999999999999999998754 344443 7899999999998763
Q ss_pred CCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhch
Q 006374 505 DPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 543 (648)
Q Consensus 505 ~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P 543 (648)
.. .++..+++|.++|+++.|+.++|.++++++|
T Consensus 76 ~~------~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~ 108 (115)
T cd00038 76 GN------GPRSATVRALTDSELLVLPRSDFRRLLQEYP 108 (115)
T ss_pred cC------CCCCceEEEcCceEEEEEeHHHHHHHHHHCc
Confidence 21 2377899999999999999999999999994
No 15
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.34 E-value=9.4e-12 Score=105.17 Aligned_cols=90 Identities=22% Similarity=0.352 Sum_probs=77.1
Q ss_pred eEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEechhhhccCCCCCCCCCCCcceEEEEec
Q 006374 444 PVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVT 523 (648)
Q Consensus 444 ~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~ 523 (648)
.+.|+||++|+++|+.++++|||.+|.++++..+.+.+.. .+..+++|++||+.+++. .. ++..+++|.+
T Consensus 1 ~~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~---~~------~~~~~~~a~~ 70 (91)
T PF00027_consen 1 EKTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQ-IIFFLGPGDIFGEIELLT---GK------PSPFTVIALT 70 (91)
T ss_dssp -EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEE-EEEEEETTEEESGHHHHH---TS------BBSSEEEESS
T ss_pred CeEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceee-eecceeeeccccceeecC---CC------ccEEEEEEcc
Confidence 3689999999999999999999999999999865443321 368999999999998752 11 3788999999
Q ss_pred eEEEEEEeHHHHHHHHHhch
Q 006374 524 NVEAFAINTDDLRAIVYQYW 543 (648)
Q Consensus 524 ~~~ll~Ls~~df~~ll~~~P 543 (648)
+|+++.|++++|.++++++|
T Consensus 71 ~~~~~~i~~~~~~~~~~~~p 90 (91)
T PF00027_consen 71 DSEVLRIPREDFLQLLQQDP 90 (91)
T ss_dssp SEEEEEEEHHHHHHHHHHSH
T ss_pred CEEEEEEeHHHHHHHHHhCc
Confidence 99999999999999999996
No 16
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.29 E-value=8.5e-11 Score=115.56 Aligned_cols=167 Identities=16% Similarity=0.182 Sum_probs=105.9
Q ss_pred cCeeEEecCCeEEEccCC--CcCeEEEEEeeeEEEEEec-CCeeeeEEEEecCCCCeEechhhhccCCCCCCCCCCCcce
Q 006374 441 CLKPVLYVQECCIVKEGD--PICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNC 517 (648)
Q Consensus 441 ~l~~~~~~kge~I~~eGd--~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~ 517 (648)
.++...|+||++|+++|| +++++|+|.+|.|+++..+ +|++.+ +..+.+|++||+.+++ . .++++
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~--l~~~~~Gd~~G~~~~~---~-------~~~~~ 72 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALT--LRYVRPGEYFGEEALA---G-------AERAY 72 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCeechHHhc---C-------CCCCc
Confidence 467889999999999999 7799999999999999843 456654 7899999999997542 1 12678
Q ss_pred EEEEeceEEEEEEeHHHHHHHHHhchhhhhhhhhhHHHHhhhchhhhhhHHhHHHHHHHHHHhhhhhhhHHHHHhhhhhh
Q 006374 518 ALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLYAKENILQDQ 597 (648)
Q Consensus 518 tv~A~~~~~ll~Ls~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~~~r~~~~~~~~a~ery~~~ 597 (648)
+++|+++|+++.|++++| .| .+....++... ..+....+.+.+.......+|+...+...++. +...
T Consensus 73 ~~~A~~~~~v~~i~~~~~------~~--~~~~~l~~~l~----~~~~~~~~~~~~l~~~~~~~Rla~~Ll~l~~~-~~~~ 139 (202)
T PRK13918 73 FAEAVTDSRIDVLNPALM------SA--EDNLVLTQHLV----RTLARAYESIYRLVGQRLKNRIAAALLELSDT-PLAT 139 (202)
T ss_pred eEEEcCceEEEEEEHHHc------Ch--hhHHHHHHHHH----HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH-hCCC
Confidence 999999999999999987 32 22222222211 12222222222223333444444444433332 1111
Q ss_pred hhhcCCCCCcchhHHHHHHHH------HHHHHHhhhcCCCC
Q 006374 598 KAEAGGKPSKFGTAIYATQFF------TYVRRSVKRNGGLP 632 (648)
Q Consensus 598 ~~~~p~~~~~~~~~~iAs~~~------~~~~~~~~~~~~~~ 632 (648)
....|.+...+++..||+.+. +.++.-.++.|...
T Consensus 140 ~~~~~~~~~~~t~~~iA~~lG~tretvsR~l~~l~~~g~I~ 180 (202)
T PRK13918 140 QEDSGETMIYATHDELAAAVGSVRETVTKVIGELSREGYIR 180 (202)
T ss_pred CCCCCeEEecCCHHHHHHHhCccHHHHHHHHHHHHHCCCEE
Confidence 223445566788999998874 34455555566555
No 17
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.29 E-value=1.1e-13 Score=138.97 Aligned_cols=58 Identities=17% Similarity=0.232 Sum_probs=48.3
Q ss_pred HHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 006374 296 IYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIK 353 (648)
Q Consensus 296 i~slYwa~~TmttvGyGdi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~ii~~~~~~ 353 (648)
-.|||||++|||||||||..|.|.+.+++..++.|.|++-.|.-+.-|.+-+.-...+
T Consensus 395 PdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVsNFnyFYhr 452 (507)
T KOG1545|consen 395 PDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 452 (507)
T ss_pred cccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEecccceeec
Confidence 3689999999999999999999999999999999999999888776555444333333
No 18
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.28 E-value=8.1e-11 Score=103.78 Aligned_cols=109 Identities=20% Similarity=0.326 Sum_probs=93.6
Q ss_pred ccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEec-CCeeeeEEEEecCCCCeEechhhhccC
Q 006374 426 MFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSAL 504 (648)
Q Consensus 426 ~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fGe~~l~~~l 504 (648)
+|.+++++.++.++..++.+.+++|++|+++|++++++|||.+|.++++..+ +|++.. +..+.+|++||+..++
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~~--- 75 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQI--LGILGPGDFFGELALL--- 75 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEE--EEeecCCceechhhhc---
Confidence 4678999999999999999999999999999999999999999999999754 344433 7999999999998763
Q ss_pred CCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhch
Q 006374 505 DPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 543 (648)
Q Consensus 505 ~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P 543 (648)
.. ...++..+++|.++|+++.++.+++...+..+|
T Consensus 76 ~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 110 (120)
T smart00100 76 TN----SRRAASATAVALELATLLRIDFRDFLQLLQENP 110 (120)
T ss_pred cC----CCcccceEEEEEeeEEEEccCHHHHHHHHHHhH
Confidence 11 112367899999999999999999999999984
No 19
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.25 E-value=2.5e-11 Score=128.47 Aligned_cols=90 Identities=17% Similarity=0.133 Sum_probs=73.5
Q ss_pred chHHHHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Q 006374 290 AFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRT 369 (648)
Q Consensus 290 ~~~~~Yi~slYwa~~TmttvGyGdi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~ii~~~~~~~~~~~~~~~~i~~~m~ 369 (648)
+-+..|..|+||++.|+|||||||.+|+|-..++.+.++.++|..+||.--|.+++-+.-.-+ ++.++ ++|-+
T Consensus 265 ~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQ--eq~RQ-----KHf~r 337 (654)
T KOG1419|consen 265 DEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQ--EQHRQ-----KHFNR 337 (654)
T ss_pred ccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhH--HHHHH-----HHHHh
Confidence 346789999999999999999999999999999999999999999999998888877653322 22222 47778
Q ss_pred hCCCCHHHHHHHHHHHH
Q 006374 370 FEMLSQSLQQRVRNHQQ 386 (648)
Q Consensus 370 ~~~lp~~L~~rv~~y~~ 386 (648)
+++.--.|.+-.-+||-
T Consensus 338 rr~pAA~LIQc~WR~ya 354 (654)
T KOG1419|consen 338 RRNPAASLIQCAWRYYA 354 (654)
T ss_pred hcchHHHHHHHHHHHHh
Confidence 88888888777777664
No 20
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.17 E-value=7.5e-11 Score=114.67 Aligned_cols=184 Identities=18% Similarity=0.225 Sum_probs=106.2
Q ss_pred hHHHHHHhhhh---hc---CCccccChhHhhhhhhhhHH--hHHHhhhcCCccchhheeeeccCCCCCccchhhHHHHHH
Q 006374 97 LRTIFDFFNII---YS---SSTPHKHSRANAKKCFYLNS--FLKDLLSCLPIPQLVTSIIIITSKGSGFFPAMVWLKVVV 168 (648)
Q Consensus 97 ~~~~~D~~f~~---f~---~~~~v~d~~~Ia~~~~Ylk~--F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~llrl~~ 168 (648)
+|.++|++|.+ .+ .|-. ++ +|+++ .++|+++++|......... ....+.....+++|++|
T Consensus 2 ~~~~~~~~f~~e~~l~~~~~~~~-------~~--~y~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~ 69 (200)
T PF00520_consen 2 LEIIFDVIFILEIVLRFFALGFK-------RR--RYFRSWWNWFDFISVIPSIVSVILRS---YGSASAQSLLRIFRLLR 69 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCG--------G--CCCCSHHHHHHHHHHHHHCCHHCCHC---SS--HHCHCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHhccH-------HH--HHhcChhhcccccccccccccccccc---cccccccceEEEEEeec
Confidence 56777777777 22 3322 77 99998 7799999999965544221 11100001123333333
Q ss_pred HHHHhHHHHHHHHHHHHHhhccchhhhhchHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhHHHHHhhhccCCccccccc
Q 006374 169 IVQYVPRFYRIYRLYAVAESTSGILAQMKWVKSACCIL-IYLLAAHVFGALWYFMAIERETECWKKACREHTECYQNSFH 247 (648)
Q Consensus 169 l~~~l~rl~ri~rl~~~~~~~~~~~~~~~~~~~~~~l~-~~ll~~H~~aC~wy~~~~~~~~~~w~~~c~~~~~c~~~~~~ 247 (648)
+.|++|+.+..+.+.+....+.+ .. ..+.+++ +++++.|++||+++.+.......|+.
T Consensus 70 ----~~R~l~~~~~~~~~~~~~~~~~~-~~-~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~--------------- 128 (200)
T PF00520_consen 70 ----LLRLLRLLRRFRSLRRLLRALIR-SF-PDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCD--------------- 128 (200)
T ss_dssp ----HHHHHHHHHTTTSHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTS--------------------
T ss_pred ----ccccccccccccccccccccccc-cc-ccccccccccccccccccchhheecccccccccc---------------
Confidence 23444444443333322221111 11 1233333 44578899999999887432211100
Q ss_pred ccCCCCccccccccCCCCcCCCCccccchhHHHHhhccccccchHHHHHHHHHhhhhccccccccCcccC-----chhHH
Q 006374 248 CYETVGNYTFLTGLCPTMIQDTTMFNFGMFQEAIQSGMVEEKAFKKKFIYCFRWGLQTVSCAGQNLQTST-----HEGEN 322 (648)
Q Consensus 248 ~~~~~~~~~W~~~~~~~~~~~~~~~~~g~y~~~l~~~~~~~~~~~~~Yi~slYwa~~TmttvGyGdi~p~-----~~~E~ 322 (648)
.++-.. + .....+..+.|..|+||++.++|+.|+||+.+. +..+.
T Consensus 129 -------~~~~~~--------~---------------~~~~~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 178 (200)
T PF00520_consen 129 -------PTWDSE--------N---------------DIYGYENFDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAV 178 (200)
T ss_dssp ---------SS---------------------------SSTHHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHH
T ss_pred -------cccccc--------c---------------ccccccccccccccccccccccccCCccccccccccccchhHh
Confidence 000000 0 012345677899999999999999999999887 88999
Q ss_pred HHH-HHHHHHHHHHHHHHHHHH
Q 006374 323 LLA-SFIIIASLLLLLLVLGNL 343 (648)
Q Consensus 323 i~~-i~~~i~G~~~fa~iig~i 343 (648)
++. ++..+.+.++++.++|.|
T Consensus 179 ~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 179 IFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhHHHHHHHHHHhcC
Confidence 999 666666778889999875
No 21
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.16 E-value=2.9e-10 Score=124.17 Aligned_cols=113 Identities=18% Similarity=0.311 Sum_probs=98.5
Q ss_pred HHHhcCCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEec
Q 006374 418 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 497 (648)
Q Consensus 418 ~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe 497 (648)
.+.++++++|+++++++++.++..++.+.|++|++|+++||.++.+|+|.+|.|+++..+++.+. .+..+++|++||+
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~--~l~~l~~Gd~fG~ 84 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESR--PEFLLKRYDYFGY 84 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcE--EEEEeCCCCEeeh
Confidence 45688999999999999999999999999999999999999999999999999999885543333 3788999999997
Q ss_pred hhhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhch
Q 006374 498 ELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 543 (648)
Q Consensus 498 ~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P 543 (648)
. + .. .++..+++|.++|+++.|++++|..+...++
T Consensus 85 ~-l----~~------~~~~~~~~A~~d~~v~~ip~~~~~~~~~~~~ 119 (413)
T PLN02868 85 G-L----SG------SVHSADVVAVSELTCLVLPHEHCHLLSPKSI 119 (413)
T ss_pred h-h----CC------CCcccEEEECCCEEEEEEcHHHHhhhccccc
Confidence 4 3 11 2378899999999999999999999888774
No 22
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.15 E-value=4.6e-11 Score=125.85 Aligned_cols=119 Identities=21% Similarity=0.422 Sum_probs=104.7
Q ss_pred HHHHHHhcCCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCe
Q 006374 415 ELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDF 494 (648)
Q Consensus 415 ~~~~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~ 494 (648)
.-+.++|+.+|+|+++|++.+..++..++...|..|++|+++|+.++.+|+|.+|.|.+...+.+.+....+..+..||+
T Consensus 268 ~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~ 347 (732)
T KOG0614|consen 268 EQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDY 347 (732)
T ss_pred HHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccch
Confidence 44678999999999999999999999999999999999999999999999999999999986654333334799999999
Q ss_pred EechhhhccCCCCCCCCCCCcceEEEEece-EEEEEEeHHHHHHHHHhc
Q 006374 495 WGEELATSALDPDPLSNIPHSNCALISVTN-VEAFAINTDDLRAIVYQY 542 (648)
Q Consensus 495 fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~-~~ll~Ls~~df~~ll~~~ 542 (648)
|||-+++ .+ ..|++++.|.++ ++++.|+++.|.+++...
T Consensus 348 FGE~al~--~e-------dvRtAniia~~~gv~cl~lDresF~~liG~l 387 (732)
T KOG0614|consen 348 FGERALL--GE-------DVRTANIIAQAPGVECLTLDRESFKKLIGDL 387 (732)
T ss_pred hhHHHhh--cc-------CccchhhhccCCCceEEEecHHHHHHhcccH
Confidence 9999885 11 138899999988 999999999999999888
No 23
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.12 E-value=9.9e-10 Score=117.68 Aligned_cols=112 Identities=14% Similarity=0.236 Sum_probs=99.2
Q ss_pred HHHhcCCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEec
Q 006374 418 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 497 (648)
Q Consensus 418 ~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe 497 (648)
.+++.++|+|+.++++++.+|...++...|.|||.|+..|.+.+++|+|.+|.|+++..+|. .+..+..|+.||-
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~g~-----v~~~~~~gdlFg~ 80 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDGGE-----VLDRLAAGDLFGF 80 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCCCe-----eeeeeccCccccc
Confidence 56889999999999999999999999999999999999999999999999999999986543 2799999999999
Q ss_pred hhhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhch
Q 006374 498 ELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 543 (648)
Q Consensus 498 ~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P 543 (648)
.+++. .. + ....+.|.+|+.+|.|+++.|.++++++|
T Consensus 81 ~~l~~---~~-----~-~~~~~~aeedsl~y~lp~s~F~ql~~~n~ 117 (610)
T COG2905 81 SSLFT---EL-----N-KQRYMAAEEDSLCYLLPKSVFMQLMEENP 117 (610)
T ss_pred hhhcc---cC-----C-CcceeEeeccceEEecCHHHHHHHHHhCc
Confidence 98752 11 1 34477888899999999999999999994
No 24
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.11 E-value=2.5e-10 Score=115.71 Aligned_cols=110 Identities=17% Similarity=0.277 Sum_probs=97.6
Q ss_pred HHHhcCCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEec
Q 006374 418 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 497 (648)
Q Consensus 418 ~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe 497 (648)
.+.+++.-+|++++++.+.++...+.++.++.|+.|+++|+.++.+|+|.+|.+.++.. ++ .+..+++|..|||
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~--~~----~v~~~~~g~sFGE 194 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVN--GT----YVTTYSPGGSFGE 194 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEEC--Ce----EEeeeCCCCchhh
Confidence 45667777999999999999999999999999999999999999999999999999984 22 2689999999999
Q ss_pred hhhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhc
Q 006374 498 ELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 542 (648)
Q Consensus 498 ~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~ 542 (648)
.++++ .+|+.+|+.|.+++.+|.|++..|..++-..
T Consensus 195 lALmy---------n~PRaATv~a~t~~klWgldr~SFrrIi~~s 230 (368)
T KOG1113|consen 195 LALMY---------NPPRAATVVAKSLKKLWGLDRTSFRRIIMKS 230 (368)
T ss_pred hHhhh---------CCCcccceeeccccceEEEeeceeEEEeecc
Confidence 99853 2358999999999999999999998877665
No 25
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.10 E-value=3.7e-10 Score=93.51 Aligned_cols=55 Identities=16% Similarity=0.302 Sum_probs=49.4
Q ss_pred HHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006374 294 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQ 348 (648)
Q Consensus 294 ~Yi~slYwa~~TmttvGyGdi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~ii~ 348 (648)
.|..|+||++.|+||+||||+.|.+..+++++++.+++|..+++..++.+++.+.
T Consensus 24 ~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 24 SFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp SHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4778999999999999999999999999999999999999999999999998875
No 26
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.08 E-value=1.4e-10 Score=122.28 Aligned_cols=117 Identities=21% Similarity=0.407 Sum_probs=103.9
Q ss_pred hhHHHHHHHHhcCCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecC
Q 006374 411 EMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLS 490 (648)
Q Consensus 411 ~i~~~~~~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~ 490 (648)
.=..++-.+.+..-.+++++++.++.+++.+|-+..|.+|+.|++|||+++++|.+.+|.+++.. +|+ .+..++
T Consensus 146 ~~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~--~g~----ll~~m~ 219 (732)
T KOG0614|consen 146 VGAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSR--EGK----LLGKMG 219 (732)
T ss_pred ccHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEee--CCe----eeeccC
Confidence 33455667788888899999999999999999999999999999999999999999999999987 333 279999
Q ss_pred CCCeEechhhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhc
Q 006374 491 TGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 542 (648)
Q Consensus 491 ~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~ 542 (648)
+|..|||.++++++ +|+++|+|+++|.+|.|+++.|+.++...
T Consensus 220 ~gtvFGELAILync---------tRtAsV~alt~~~lWaidR~vFq~IM~~t 262 (732)
T KOG0614|consen 220 AGTVFGELAILYNC---------TRTASVRALTDVRLWAIDREVFQAIMMRT 262 (732)
T ss_pred CchhhhHHHHHhCC---------cchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999987543 38999999999999999999999999877
No 27
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.67 E-value=3.2e-08 Score=100.58 Aligned_cols=116 Identities=16% Similarity=0.261 Sum_probs=102.6
Q ss_pred HHHHHHHHhcCCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCC
Q 006374 413 KSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTG 492 (648)
Q Consensus 413 ~~~~~~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G 492 (648)
...+|.+.|+++|.+..+...+...++..+.++.|++|+.|+.+|+.++.+|+|.+|.|.+....+| +.+ .++.|
T Consensus 234 krkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~----v~v-kl~~~ 308 (368)
T KOG1113|consen 234 KRKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDG----VEV-KLKKG 308 (368)
T ss_pred hhhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCC----eEE-Eechh
Confidence 4567889999999999999999999999999999999999999999999999999999998875444 224 99999
Q ss_pred CeEechhhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhc
Q 006374 493 DFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 542 (648)
Q Consensus 493 ~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~ 542 (648)
++|||.+++. .. ++.+++.|.+...+..++++.|+.|+.--
T Consensus 309 dyfge~al~~---~~------pr~Atv~a~~~~kc~~~dk~~ferllgpc 349 (368)
T KOG1113|consen 309 DYFGELALLK---NL------PRAATVVAKGRLKCAKLDKPRFERLLGPC 349 (368)
T ss_pred hhcchHHHHh---hc------hhhceeeccCCceeeeeChHHHHHHhhHH
Confidence 9999998752 22 38899999999999999999999998754
No 28
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.65 E-value=2.4e-09 Score=108.82 Aligned_cols=55 Identities=13% Similarity=0.238 Sum_probs=47.6
Q ss_pred HHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Q 006374 294 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLV----LGNLTIYLQ 348 (648)
Q Consensus 294 ~Yi~slYwa~~TmttvGyGdi~p~~~~E~i~~i~~~i~G~~~fa~i----ig~i~~ii~ 348 (648)
.--.+||+.++||||.||||.+|.|...++|..++.+.|+++.|.- +.|++.|..
T Consensus 356 sIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIYH 414 (632)
T KOG4390|consen 356 SIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYH 414 (632)
T ss_pred cCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhHHHh
Confidence 3347999999999999999999999999999999999999998764 466666654
No 29
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.41 E-value=3.4e-06 Score=90.88 Aligned_cols=54 Identities=15% Similarity=0.193 Sum_probs=49.8
Q ss_pred HHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006374 294 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYL 347 (648)
Q Consensus 294 ~Yi~slYwa~~TmttvGyGdi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~ii 347 (648)
.+..|+||++.|+|||||||+.|.+...+++++++++.|..+|++.++.+...+
T Consensus 168 s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 168 SLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred CHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999998887644
No 30
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.30 E-value=6.5e-07 Score=95.34 Aligned_cols=137 Identities=15% Similarity=0.173 Sum_probs=90.9
Q ss_pred HHHHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhC
Q 006374 292 KKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTFE 371 (648)
Q Consensus 292 ~~~Yi~slYwa~~TmttvGyGdi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~ii~~~~~~~~~~~~~~~~i~~~m~~~ 371 (648)
...|..|.|+-++||+||||||+...|...++|.+|+++.|..+||.-+..|..++.+.+.-.-+|+..- =-++-
T Consensus 286 rltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk~eh-----gkkhi 360 (1103)
T KOG1420|consen 286 RLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYKAEH-----GKKHI 360 (1103)
T ss_pred cchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceeehhc-----CCeeE
Confidence 3468999999999999999999999999999999999999999999999999999998776544443210 00000
Q ss_pred CCCHH-HHHHHHHHHHHH-HHHhcCCC-HHHHHhcccccchhhhHHHHHHHHhcCCccccc--CCHHHHH
Q 006374 372 MLSQS-LQQRVRNHQQYV-WQEMRGID-VENLLNNLPVNLNWEMKSELCLEVLKKVPMFQM--MGKSILS 436 (648)
Q Consensus 372 ~lp~~-L~~rv~~y~~~~-~~~~~~~~-e~~ll~~Lp~~Lr~~i~~~~~~~~L~~i~~F~~--ls~~~l~ 436 (648)
-+-.+ .-+.|..|++.. ++....+| |--++...||+|--|- +++....++.+|++ +++..+.
T Consensus 361 vvcghityesvshflkdflhedrddvdvevvflhr~~pdleleg---lfkrhft~veffqgtvmnp~dl~ 427 (1103)
T KOG1420|consen 361 VVCGHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELEG---LFKRHFTQVEFFQGTVMNPHDLA 427 (1103)
T ss_pred EEecceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchHH---HHhhheeeEEEecccccChhhhh
Confidence 00011 122333333322 22223344 3345788888885543 34556677778865 5555443
No 31
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=97.94 E-value=0.00031 Score=74.27 Aligned_cols=92 Identities=12% Similarity=0.063 Sum_probs=75.9
Q ss_pred hHHHHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHh
Q 006374 291 FKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTF 370 (648)
Q Consensus 291 ~~~~Yi~slYwa~~TmttvGyGdi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~ii~~~~~~~~~~~~~~~~i~~~m~~ 370 (648)
....|..|+|....|..++||||++|.|.-.+..+++..++|+++-|.+++-++.=+ +..+--..+++||-+
T Consensus 284 ~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKL--------eLt~aEKhVhNFMmD 355 (489)
T KOG3684|consen 284 VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKL--------ELTKAEKHVHNFMMD 355 (489)
T ss_pred hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999888544 333444567888888
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 006374 371 EMLSQSLQQRVRNHQQYVWQ 390 (648)
Q Consensus 371 ~~lp~~L~~rv~~y~~~~~~ 390 (648)
.++.+++++-..+=++..|.
T Consensus 356 tqLTk~~KnAAA~VLqeTW~ 375 (489)
T KOG3684|consen 356 TQLTKEHKNAAANVLQETWL 375 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88887777776666666664
No 32
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.92 E-value=3.6e-05 Score=81.03 Aligned_cols=58 Identities=17% Similarity=0.202 Sum_probs=46.7
Q ss_pred HHHHHHHHhhhhccccccccC--cccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 006374 293 KKFIYCFRWGLQTVSCAGQNL--QTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSG 350 (648)
Q Consensus 293 ~~Yi~slYwa~~TmttvGyGd--i~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~ii~~~ 350 (648)
..+..+|+||+.|+||+|||. ++|....-.+++++-+++|.++.|+++|-+-+=++.-
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP 142 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRP 142 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 457899999999999999998 6788888888899999999999999999887655543
No 33
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.77 E-value=3.4e-05 Score=86.89 Aligned_cols=99 Identities=19% Similarity=0.244 Sum_probs=83.3
Q ss_pred HHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEe-cCCeeeeEEEEecCCCCeEechhhhccCCCCCCCCC
Q 006374 434 ILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTT-NGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNI 512 (648)
Q Consensus 434 ~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~-~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~ 512 (648)
++..+-..+....+.+|+.++++||.++++|+|..|.++.... .+|+... +..++.||.+|+...+ ...
T Consensus 500 ~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i--~~EygrGd~iG~~E~l---t~~----- 569 (1158)
T KOG2968|consen 500 FLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEI--VGEYGRGDLIGEVEML---TKQ----- 569 (1158)
T ss_pred HHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchh--hhhccCcceeehhHHh---hcC-----
Confidence 4555666778999999999999999999999999999997763 4444433 6899999999998764 222
Q ss_pred CCcceEEEEeceEEEEEEeHHHHHHHHHhch
Q 006374 513 PHSNCALISVTNVEAFAINTDDLRAIVYQYW 543 (648)
Q Consensus 513 ~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P 543 (648)
+|..|+.|+.++++..|+..-|..+..+||
T Consensus 570 -~R~tTv~AvRdSelariPe~l~~~ik~ryP 599 (1158)
T KOG2968|consen 570 -PRATTVMAVRDSELARIPEGLLNFIKLRYP 599 (1158)
T ss_pred -CccceEEEEeehhhhhccHHHHHHHHHhcc
Confidence 377899999999999999999999999995
No 34
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.47 E-value=0.0041 Score=60.50 Aligned_cols=109 Identities=12% Similarity=0.082 Sum_probs=82.4
Q ss_pred HHHHHHHhcCeeEEecCCeEE-EccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEechhhhccCCCCCCCC
Q 006374 433 SILSEMCKCLKPVLYVQECCI-VKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSN 511 (648)
Q Consensus 433 ~~l~~L~~~l~~~~~~kge~I-~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~ 511 (648)
...+.+....++..+++|..+ ....+..+..+++.+|.|.+... ++- .+........||-...+ .+.
T Consensus 13 ~L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr~-d~l----l~~t~~aP~IlGl~~~~---~~~---- 80 (207)
T PRK11832 13 KLDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRRE-ENV----LIGITQAPYIMGLADGL---MKN---- 80 (207)
T ss_pred HHHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEec-CCe----EEEeccCCeEeeccccc---CCC----
Confidence 345667778889999999997 54444446799999999999543 332 36788888899975532 211
Q ss_pred CCCcceEEEEeceEEEEEEeHHHHHHHHHhchhhhhhhhhhHHHHhhhchhhhhhHHhHHHH
Q 006374 512 IPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQA 573 (648)
Q Consensus 512 ~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~ 573 (648)
...+.++|.++|+++.++.+++.++++++ .=|+.+++.++-.
T Consensus 81 --~~~~~l~ae~~c~~~~i~~~~~~~iie~~------------------~LW~~~~~~l~~~ 122 (207)
T PRK11832 81 --DIPYKLISEGNCTGYHLPAKQTITLIEQN------------------QLWRDAFYWLAWQ 122 (207)
T ss_pred --CceEEEEEcCccEEEEeeHHHHHHHHHHh------------------chHHHHHHHHHHH
Confidence 13568999999999999999999999999 7777777766654
No 35
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.45 E-value=0.00013 Score=79.93 Aligned_cols=57 Identities=14% Similarity=0.355 Sum_probs=52.8
Q ss_pred HHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 006374 294 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSG 350 (648)
Q Consensus 294 ~Yi~slYwa~~TmttvGyGdi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~ii~~~ 350 (648)
-+..|+|++++++||+|||+++|.|...++++|+..++|.-++..+++.++..+...
T Consensus 115 ~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~ 171 (433)
T KOG1418|consen 115 SFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADS 171 (433)
T ss_pred ecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 355799999999999999999999999999999999999999999999999888644
No 36
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=97.29 E-value=0.00016 Score=58.63 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=31.0
Q ss_pred cccCceecCCCcc---hHHHHHHHHHHHHhhcceeEEE
Q 006374 40 NHINRIVDPRGPF---WNWIWLAVRIISTSLDPLFFYI 74 (648)
Q Consensus 40 ~~~~~vi~P~s~~---Wd~~~~~~~l~~~~~~Pl~~~~ 74 (648)
+...+||||.|.| ||.+++++++++++++|+.++|
T Consensus 33 ~~~~~IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~isF 70 (77)
T PF08412_consen 33 SSGPWIIHPFSKFRFYWDLIMLILLLYNLIIIPFRISF 70 (77)
T ss_pred cCCCeEEcCCccHHHHHHHHHHHHHHHHHHHHhhhheE
Confidence 3457899999999 9999999999999999987654
No 37
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=97.14 E-value=0.031 Score=51.17 Aligned_cols=104 Identities=14% Similarity=0.238 Sum_probs=82.1
Q ss_pred cCCHHHHHHHHhc-CeeEEecCCeEEEccC-CCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEechhhhccCCC
Q 006374 429 MMGKSILSEMCKC-LKPVLYVQECCIVKEG-DPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDP 506 (648)
Q Consensus 429 ~ls~~~l~~L~~~-l~~~~~~kge~I~~eG-d~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~ 506 (648)
+.|....+.++.. .+...+.+|+.-.-|| .+.+.+-++++|.+++... |+ .+..+.|-+|...-.+.. ..+
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~--g~----fLH~I~p~qFlDSPEW~s-~~~ 86 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCD--GR----FLHYIYPYQFLDSPEWES-LRP 86 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEEC--CE----eeEeecccccccChhhhc-ccc
Confidence 5788888888877 6778899999999999 5578999999999999873 33 278888888887766531 111
Q ss_pred CCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhc
Q 006374 507 DPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 542 (648)
Q Consensus 507 ~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~ 542 (648)
+ ....-..|+.|.++|..+..+++.+..++.+.
T Consensus 87 s---~~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~ 119 (153)
T PF04831_consen 87 S---EDDKFQVTITAEEDCRYLCWPREKLYLLLAKD 119 (153)
T ss_pred C---CCCeEEEEEEEcCCcEEEEEEHHHHHHHHhhC
Confidence 1 11235679999999999999999999999999
No 38
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.09 E-value=0.0037 Score=71.03 Aligned_cols=102 Identities=17% Similarity=0.178 Sum_probs=80.5
Q ss_pred HHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecC-CeeeeEEEEecCCCCeEech-hhhccCCCCCCCCCCC
Q 006374 437 EMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNG-GRNTSVFKKYLSTGDFWGEE-LATSALDPDPLSNIPH 514 (648)
Q Consensus 437 ~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~-~~~~~~~~~~l~~G~~fGe~-~l~~~l~~~~~~~~~~ 514 (648)
+++.+++...+..||++++.|+..+.+|.+.+|.+.++..++ |++. .+..+.+|+.|... +++-.+...| ...
T Consensus 110 ~L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~--llk~V~~G~~~tSllSiLd~l~~~p---s~~ 184 (1158)
T KOG2968|consen 110 ELDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEY--LLKTVPPGGSFTSLLSILDSLPGFP---SLS 184 (1158)
T ss_pred eechhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCcee--eEeeccCCCchHhHHHHHHhccCCC---ccc
Confidence 344888889999999999999999999999999999988654 4443 37899999877663 3321122222 234
Q ss_pred cceEEEEeceEEEEEEeHHHHHHHHHhch
Q 006374 515 SNCALISVTNVEAFAINTDDLRAIVYQYW 543 (648)
Q Consensus 515 ~~~tv~A~~~~~ll~Ls~~df~~ll~~~P 543 (648)
++..++|.++|.+..++.+.|.++...||
T Consensus 185 ~~i~akA~t~~tv~~~p~~sF~~~~~k~P 213 (1158)
T KOG2968|consen 185 RTIAAKAATDCTVARIPYTSFRESFHKNP 213 (1158)
T ss_pred ceeeeeeecCceEEEeccchhhhhhccCh
Confidence 66789999999999999999999999997
No 39
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=96.30 E-value=0.028 Score=58.77 Aligned_cols=57 Identities=14% Similarity=0.243 Sum_probs=45.2
Q ss_pred HHHHHHHhhhhccccccccC--cccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 006374 294 KFIYCFRWGLQTVSCAGQNL--QTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSG 350 (648)
Q Consensus 294 ~Yi~slYwa~~TmttvGyGd--i~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~ii~~~ 350 (648)
....||-|++-|=||+|||- ++.....-.+..++-+|+|+++-|+++|.+-+=++.-
T Consensus 112 sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarP 170 (400)
T KOG3827|consen 112 SFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARP 170 (400)
T ss_pred chhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 45688999999999999997 4555556666777788999999999999887655443
No 40
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=96.26 E-value=0.0015 Score=66.26 Aligned_cols=51 Identities=18% Similarity=0.374 Sum_probs=44.1
Q ss_pred HHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006374 294 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLT 344 (648)
Q Consensus 294 ~Yi~slYwa~~TmttvGyGdi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~ 344 (648)
++.-|||||.+.+||+|||-.+|.|++.++|+|+..++|+-+--..+..++
T Consensus 80 kF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~g 130 (350)
T KOG4404|consen 80 KFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIG 130 (350)
T ss_pred ccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHH
Confidence 567899999999999999999999999999999999999866555555444
No 41
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=96.21 E-value=0.0053 Score=62.43 Aligned_cols=60 Identities=10% Similarity=0.182 Sum_probs=46.0
Q ss_pred HHHHHHHhhhhccccccccCcccCc-------hhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 006374 294 KFIYCFRWGLQTVSCAGQNLQTSTH-------EGEN-LLASFIIIASLLLLLLVLGNLTIYLQSGTIK 353 (648)
Q Consensus 294 ~Yi~slYwa~~TmttvGyGdi~p~~-------~~E~-i~~i~~~i~G~~~fa~iig~i~~ii~~~~~~ 353 (648)
.|+.|+|+.+.|+||+|+||.+|.- ..++ .++.+.+++|..+++-.++-+.-.+..++..
T Consensus 186 syfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~~~~ 253 (350)
T KOG4404|consen 186 SYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTMNAE 253 (350)
T ss_pred chhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3789999999999999999987642 2333 4566677889999888888887766655543
No 42
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=95.55 E-value=0.03 Score=61.76 Aligned_cols=116 Identities=20% Similarity=0.283 Sum_probs=88.5
Q ss_pred HHHHHHHHhcCCcccccCCHHHHHHHHhcCeeEE-ecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCC
Q 006374 413 KSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVL-YVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLST 491 (648)
Q Consensus 413 ~~~~~~~~L~~i~~F~~ls~~~l~~L~~~l~~~~-~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~ 491 (648)
..+...++..+.|-|.+++-....+||..|.... =..|.+++..|+.-+..+.|+.|+|++...+|.. ..+.-
T Consensus 275 DieqLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~PdGk~------e~l~m 348 (1283)
T KOG3542|consen 275 DIEQLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPDGKR------EELKM 348 (1283)
T ss_pred HHHHHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCCCce------EEeec
Confidence 3344567888899999999999999998887544 4679999999999999999999999999988775 45667
Q ss_pred CCeEechhhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhc
Q 006374 492 GDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 542 (648)
Q Consensus 492 G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~ 542 (648)
|+.||...- .+.. +.. ..--.-+.||+..+|..+|+-.++.+.
T Consensus 349 GnSFG~~PT---~dkq-ym~----G~mRTkVDDCqFVciaqqDycrIln~v 391 (1283)
T KOG3542|consen 349 GNSFGAEPT---PDKQ-YMI----GEMRTKVDDCQFVCIAQQDYCRILNTV 391 (1283)
T ss_pred ccccCCCCC---cchh-hhh----hhhheecccceEEEeehhhHHHHHHHH
Confidence 999997642 1100 000 011135689999999999999888764
No 43
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=95.20 E-value=0.0083 Score=65.56 Aligned_cols=48 Identities=29% Similarity=0.299 Sum_probs=41.5
Q ss_pred HHHHHHHHhhhhccccccccCcccCchhHH--------HHHHHHHHHHHHHHHHHH
Q 006374 293 KKFIYCFRWGLQTVSCAGQNLQTSTHEGEN--------LLASFIIIASLLLLLLVL 340 (648)
Q Consensus 293 ~~Yi~slYwa~~TmttvGyGdi~p~~~~E~--------i~~i~~~i~G~~~fa~ii 340 (648)
--|+.|+|+++.++||+|+||++|.+...+ .+..+..++|....+.+.
T Consensus 241 w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 241 WSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 357889999999999999999999998766 577888888888887776
No 44
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.45 E-value=0.71 Score=53.61 Aligned_cols=32 Identities=13% Similarity=0.139 Sum_probs=26.3
Q ss_pred cccCceecCCCcc------------hHHHHHHHHHHHHhhccee
Q 006374 40 NHINRIVDPRGPF------------WNWIWLAVRIISTSLDPLF 71 (648)
Q Consensus 40 ~~~~~vi~P~s~~------------Wd~~~~~~~l~~~~~~Pl~ 71 (648)
.|...++.|+++| +|.++++++.++.+++.+.
T Consensus 1101 ~Ws~ylF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtiale 1144 (1956)
T KOG2302|consen 1101 LWSKYLFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALE 1144 (1956)
T ss_pred HHHHHhcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhc
Confidence 4668899999987 8888888888888887653
No 45
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=92.35 E-value=0.26 Score=53.47 Aligned_cols=49 Identities=20% Similarity=0.140 Sum_probs=32.9
Q ss_pred HHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006374 296 IYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLT 344 (648)
Q Consensus 296 i~slYwa~~TmttvGyGdi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~ 344 (648)
..|+|+.++|.+||||||..|.-=.-.++.++++.+..++.---+..++
T Consensus 219 f~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~q~~~l~ 267 (1087)
T KOG3193|consen 219 FTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPKQLDELG 267 (1087)
T ss_pred eeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHHHHHHHH
Confidence 4789999999999999999986555555544444445444443333333
No 46
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=91.07 E-value=0.42 Score=53.12 Aligned_cols=104 Identities=13% Similarity=0.201 Sum_probs=78.8
Q ss_pred cccchhhhHHHHHHHHhcCCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeE
Q 006374 405 PVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSV 484 (648)
Q Consensus 405 p~~Lr~~i~~~~~~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~ 484 (648)
|+.|+.-....--...|.+...|.++-..-+..++...+...++...++++.|+++...|++++|.|-+..
T Consensus 23 ~~~~~t~~~~rN~~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~g--------- 93 (1283)
T KOG3542|consen 23 PPHLRTPDDIRNVYEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEG--------- 93 (1283)
T ss_pred CcccCChhhhhhHHHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeec---------
Confidence 55566555444444567788889999999999999999999999999999999999999999999987632
Q ss_pred EEEecCCCCeEechhhhccCCCCCCCCCCCcceEEEEeceEEEEEEe
Q 006374 485 FKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAIN 531 (648)
Q Consensus 485 ~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls 531 (648)
...-|-.+||-.. +..++.++-.+++++..+++
T Consensus 94 --qi~mp~~~fgkr~------------g~~r~~nclllq~semivid 126 (1283)
T KOG3542|consen 94 --QIYMPYGCFGKRT------------GQNRTHNCLLLQESEMIVID 126 (1283)
T ss_pred --ceecCcccccccc------------ccccccceeeecccceeeee
Confidence 1223445666542 11267788888888888874
No 47
>COG4709 Predicted membrane protein [Function unknown]
Probab=81.44 E-value=6 Score=37.71 Aligned_cols=71 Identities=20% Similarity=0.235 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--cCCCHHHHHhcc--cccchhhhHHHHHHHHhcCCcccccCC
Q 006374 359 SKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEM--RGIDVENLLNNL--PVNLNWEMKSELCLEVLKKVPMFQMMG 431 (648)
Q Consensus 359 ~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~--~~~~e~~ll~~L--p~~Lr~~i~~~~~~~~L~~i~~F~~ls 431 (648)
+-++++++|+ .++|++.++.+..||+-++.+. .|.+|+++.++| |.++-.|+..+.-.+-.+.-+-+++.+
T Consensus 5 efL~eL~~yL--~~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~ 79 (195)
T COG4709 5 EFLNELEQYL--EGLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVR 79 (195)
T ss_pred HHHHHHHHHH--HhCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchH
Confidence 3467788898 5799999999999999888764 477899999998 667777776665444444444444443
No 48
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=73.89 E-value=15 Score=35.15 Aligned_cols=56 Identities=16% Similarity=0.304 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH--hcCCCHHHHHhcc--cccchhhhHHHH
Q 006374 359 SKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQE--MRGIDVENLLNNL--PVNLNWEMKSEL 416 (648)
Q Consensus 359 ~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~--~~~~~e~~ll~~L--p~~Lr~~i~~~~ 416 (648)
+=+++++++++ ++|++-++++.+||+-+.++ ..|.+|+++.++| |.++-+++..+.
T Consensus 5 efL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 5 EFLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 34677889996 59999999999999988875 3467899999998 666766666554
No 49
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=73.23 E-value=6.7 Score=30.66 Aligned_cols=45 Identities=24% Similarity=0.262 Sum_probs=33.2
Q ss_pred EEecCCeEEEccCCCcC-eEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEe
Q 006374 445 VLYVQECCIVKEGDPIC-EMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 496 (648)
Q Consensus 445 ~~~~kge~I~~eGd~~~-~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 496 (648)
..++||+..-..-.... ++++|++|.+.+.. ++ + ...+.+||.+=
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~-~~-~-----~~~l~~Gd~~~ 48 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV-DG-E-----RVELKPGDAIY 48 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEEE-TT-E-----EEEEETTEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEEE-cc-E-----EeEccCCEEEE
Confidence 46788887665555555 99999999999884 43 3 36778888764
No 50
>PLN03223 Polycystin cation channel protein; Provisional
Probab=72.27 E-value=47 Score=41.09 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 006374 323 LLASFIIIASLLLLLLVLGNLTIYLQSG 350 (648)
Q Consensus 323 i~~i~~~i~G~~~fa~iig~i~~ii~~~ 350 (648)
.|..+++++..++.-.+|+.|...++..
T Consensus 1398 YFfSFILLV~FILLNMFIAII~DSFsEV 1425 (1634)
T PLN03223 1398 YFYSYNIFVFMILFNFLLAIICDAFGEV 1425 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666555544
No 51
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=69.30 E-value=28 Score=31.27 Aligned_cols=69 Identities=7% Similarity=0.018 Sum_probs=43.4
Q ss_pred eeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEechhhhccCCCCCCCCCCCcceEEEEe
Q 006374 443 KPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISV 522 (648)
Q Consensus 443 ~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~ 522 (648)
....++||...-.--....++++|++|.+.+...++++ ...+.+||.+--.+- ....+++.
T Consensus 38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~-----~~~L~aGD~i~~~~~--------------~~H~~~N~ 98 (125)
T PRK13290 38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGE-----VHPIRPGTMYALDKH--------------DRHYLRAG 98 (125)
T ss_pred EEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCE-----EEEeCCCeEEEECCC--------------CcEEEEcC
Confidence 34567888755322222247999999999987323244 377899998864321 22345555
Q ss_pred ceEEEEEE
Q 006374 523 TNVEAFAI 530 (648)
Q Consensus 523 ~~~~ll~L 530 (648)
++++++.+
T Consensus 99 e~~~~l~v 106 (125)
T PRK13290 99 EDMRLVCV 106 (125)
T ss_pred CCEEEEEE
Confidence 88888776
No 52
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=69.24 E-value=31 Score=26.28 Aligned_cols=48 Identities=13% Similarity=0.083 Sum_probs=27.9
Q ss_pred hHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcccc---HHHHHHHHHHHHHHHHh
Q 006374 320 GENLLASF---IIIASLLLLLLVLGNLTIYLQSGTIK---LEEIKSKAREIEQWRTF 370 (648)
Q Consensus 320 ~E~i~~i~---~~i~G~~~fa~iig~i~~ii~~~~~~---~~~~~~~~~~i~~~m~~ 370 (648)
+..++.+. +.+++.+.|+ +-|-.++++.+.+ ..+.++|+|++.+.+.+
T Consensus 4 ~~~Iy~~~Vi~l~vl~~~~Ft---l~IRri~~~s~~kkq~~~~~eqKLDrIIeLLEK 57 (58)
T PF13314_consen 4 GDLIYYILVIILIVLFGASFT---LFIRRILINSNAKKQDVDSMEQKLDRIIELLEK 57 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhccccccchhHHHHHHHHHHHHHcc
Confidence 34455553 3344444444 3455666654443 33689999999888754
No 53
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=67.57 E-value=92 Score=36.42 Aligned_cols=75 Identities=16% Similarity=0.174 Sum_probs=54.6
Q ss_pred ccccccCcccCch------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHHHHHhCCCCHHHHH
Q 006374 307 SCAGQNLQTSTHE------GENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKL-EEIKSKAREIEQWRTFEMLSQSLQQ 379 (648)
Q Consensus 307 ttvGyGdi~p~~~------~E~i~~i~~~i~G~~~fa~iig~i~~ii~~~~~~~-~~~~~~~~~i~~~m~~~~lp~~L~~ 379 (648)
.|+|+||...... .-.+|.+++.++..+++-.+|+.|++........+ .+++.+...+ -.|-++.+|+.++.
T Consensus 601 ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~A~~-iL~lErs~p~~~r~ 679 (782)
T KOG3676|consen 601 FTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQWAAT-ILMLERSLPPALRK 679 (782)
T ss_pred HhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHH-HHHHHhcCCHHHHH
Confidence 5899999754322 24566777777888888888999998888877766 6777665444 45567999999888
Q ss_pred HHH
Q 006374 380 RVR 382 (648)
Q Consensus 380 rv~ 382 (648)
+-+
T Consensus 680 ~~~ 682 (782)
T KOG3676|consen 680 RFR 682 (782)
T ss_pred HHh
Confidence 733
No 54
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=65.62 E-value=12 Score=33.90 Aligned_cols=75 Identities=16% Similarity=0.180 Sum_probs=51.1
Q ss_pred hHHHHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHh
Q 006374 291 FKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTF 370 (648)
Q Consensus 291 ~~~~Yi~slYwa~~TmttvGyGdi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~ii~~~~~~~~~~~~~~~~i~~~m~~ 370 (648)
.......++++.+.+++. +-++..|.+...|++.+++.+.+.++.+..-|++++.+..-.. +..++.+++..+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~~-----~~~i~sl~dL~~~ 114 (148)
T PF00060_consen 41 WRFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPKY-----EPPIDSLEDLANS 114 (148)
T ss_dssp HHHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-----TSS-SSHHHHHTH
T ss_pred CcccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc-----CCCCCCHHHHHHC
Confidence 345666788888888876 5567899999999999999999999999999999998864432 2224445555554
Q ss_pred C
Q 006374 371 E 371 (648)
Q Consensus 371 ~ 371 (648)
.
T Consensus 115 ~ 115 (148)
T PF00060_consen 115 G 115 (148)
T ss_dssp S
T ss_pred C
Confidence 4
No 55
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=59.26 E-value=31 Score=32.29 Aligned_cols=65 Identities=12% Similarity=0.167 Sum_probs=44.2
Q ss_pred EccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEechhhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHH
Q 006374 454 VKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTD 533 (648)
Q Consensus 454 ~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~ 533 (648)
++..+ .++++++++|.+.+...++|+.. ...+++||+|=.-. + -..+-++.++|.++.|.+.
T Consensus 43 ~H~~~-tdE~FyqleG~~~l~v~d~g~~~---~v~L~eGd~flvP~-----------g---vpHsP~r~~~t~~LvIE~~ 104 (159)
T TIGR03037 43 FHDDP-GEEFFYQLKGEMYLKVTEEGKRE---DVPIREGDIFLLPP-----------H---VPHSPQRPAGSIGLVIERK 104 (159)
T ss_pred cccCC-CceEEEEEcceEEEEEEcCCcEE---EEEECCCCEEEeCC-----------C---CCcccccCCCcEEEEEEeC
Confidence 44433 78999999999999876665422 37889999984322 1 1234455688888888876
Q ss_pred HHH
Q 006374 534 DLR 536 (648)
Q Consensus 534 df~ 536 (648)
.-.
T Consensus 105 r~~ 107 (159)
T TIGR03037 105 RPQ 107 (159)
T ss_pred CCC
Confidence 433
No 56
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=58.20 E-value=17 Score=29.33 Aligned_cols=42 Identities=17% Similarity=0.178 Sum_probs=28.8
Q ss_pred ecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEe
Q 006374 447 YVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 496 (648)
Q Consensus 447 ~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 496 (648)
-.||..-..-. .+++.+|++|.+.+... +|. ...+++||.|-
T Consensus 14 ~~pg~~~~~~~--~~E~~~vleG~v~it~~-~G~-----~~~~~aGD~~~ 55 (74)
T PF05899_consen 14 CTPGKFPWPYP--EDEFFYVLEGEVTITDE-DGE-----TVTFKAGDAFF 55 (74)
T ss_dssp EECEEEEEEES--SEEEEEEEEEEEEEEET-TTE-----EEEEETTEEEE
T ss_pred ECCceeEeeCC--CCEEEEEEEeEEEEEEC-CCC-----EEEEcCCcEEE
Confidence 34555433332 27889999999999875 444 36778998874
No 57
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=51.90 E-value=33 Score=32.70 Aligned_cols=62 Identities=13% Similarity=0.226 Sum_probs=42.8
Q ss_pred CCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEechhhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHH
Q 006374 458 DPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLR 536 (648)
Q Consensus 458 d~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~ 536 (648)
+..++++++++|.+.+...++|+.. ...+.+||+|=--. +. ..+-++.++|..+.+.+..-.
T Consensus 52 ~~tdE~FyqleG~~~l~v~d~g~~~---~v~L~eGd~fllP~-----------gv---pHsP~r~~~tv~LviE~~r~~ 113 (177)
T PRK13264 52 DPGEEFFYQLEGDMYLKVQEDGKRR---DVPIREGEMFLLPP-----------HV---PHSPQREAGSIGLVIERKRPE 113 (177)
T ss_pred CCCceEEEEECCeEEEEEEcCCcee---eEEECCCCEEEeCC-----------CC---CcCCccCCCeEEEEEEeCCCC
Confidence 4578999999999999887666422 36789999884322 11 123355688999998776544
No 58
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=42.76 E-value=25 Score=30.71 Aligned_cols=45 Identities=18% Similarity=0.307 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHh----------cCCCHHHHHhcccccchhhhHHH
Q 006374 371 EMLSQSLQQRVRNHQQYVWQEM----------RGIDVENLLNNLPVNLNWEMKSE 415 (648)
Q Consensus 371 ~~lp~~L~~rv~~y~~~~~~~~----------~~~~e~~ll~~Lp~~Lr~~i~~~ 415 (648)
.-||+++|..|...+.-.-... ...|.-.++..||+.||.+|...
T Consensus 51 ~ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 51 AALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred HhCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 4579999999999987554322 12345789999999999998764
No 59
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=41.31 E-value=81 Score=28.18 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=36.0
Q ss_pred hcCeeEEecCCeEE-EccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEe
Q 006374 440 KCLKPVLYVQECCI-VKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 496 (648)
Q Consensus 440 ~~l~~~~~~kge~I-~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 496 (648)
.......++||+-+ .+--...++.|+|++|...+... ++ ...+++||.+=
T Consensus 36 ~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~--~~-----~~~v~~gd~~~ 86 (127)
T COG0662 36 YSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG--GE-----EVEVKAGDSVY 86 (127)
T ss_pred EEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC--CE-----EEEecCCCEEE
Confidence 34566778888875 44445578999999999999874 33 25677888763
No 60
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=38.14 E-value=73 Score=28.45 Aligned_cols=51 Identities=20% Similarity=0.173 Sum_probs=39.6
Q ss_pred CeeEEecCCeEEEccCCC-cCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEechh
Q 006374 442 LKPVLYVQECCIVKEGDP-ICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEEL 499 (648)
Q Consensus 442 l~~~~~~kge~I~~eGd~-~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ 499 (648)
.....+.||..+-.--.+ .+...+|++|.+++... ++ ...+.+||++-...
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~--g~-----~~~l~~Gd~i~ip~ 96 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE--GE-----KKELKAGDVIIIPP 96 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEec--CC-----ceEecCCCEEEECC
Confidence 446678999988777666 67899999999999885 33 36788999987653
No 61
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=37.56 E-value=70 Score=21.62 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhCCCC-----HHHHHHHHHHH
Q 006374 360 KAREIEQWRTFEMLS-----QSLQQRVRNHQ 385 (648)
Q Consensus 360 ~~~~i~~~m~~~~lp-----~~L~~rv~~y~ 385 (648)
++.++.++++.+++| .+|.+|+.+|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 456788999999998 67888888874
No 62
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=36.17 E-value=1.5e+02 Score=28.83 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=28.9
Q ss_pred cCCHHHHHHHHhcCeeEE--ecCCeEEEccCCCcC
Q 006374 429 MMGKSILSEMCKCLKPVL--YVQECCIVKEGDPIC 461 (648)
Q Consensus 429 ~ls~~~l~~L~~~l~~~~--~~kge~I~~eGd~~~ 461 (648)
..++...++......+.. +.+|+.|+++|++.+
T Consensus 173 ~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 173 EATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred HHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 467778888899999998 999999999999765
No 63
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=33.72 E-value=1.2e+02 Score=32.67 Aligned_cols=62 Identities=18% Similarity=0.187 Sum_probs=45.1
Q ss_pred chHHHHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 006374 290 AFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGT 351 (648)
Q Consensus 290 ~~~~~Yi~slYwa~~TmttvGyGdi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~ii~~~~ 351 (648)
...--|+.++=+++..+.+++-++.......=..+++++.+++.+++-+.|.+++..++--+
T Consensus 96 ~vLg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iqv~~ 157 (371)
T PF10011_consen 96 VVLGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQVSN 157 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 34557888998999888888777652222233777888888888888999988887776443
No 64
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=33.19 E-value=1.8e+02 Score=29.00 Aligned_cols=78 Identities=8% Similarity=0.072 Sum_probs=45.0
Q ss_pred CeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCC-CCeEec---hhhhccCCCCCCCCCCCcce
Q 006374 442 LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLST-GDFWGE---ELATSALDPDPLSNIPHSNC 517 (648)
Q Consensus 442 l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~-G~~fGe---~~l~~~l~~~~~~~~~~~~~ 517 (648)
++...+++|+..-.+-...+....++.|.+.+.... .. ...++. -+.|-. .++. +. ..+.+
T Consensus 31 F~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~~g--~~----f~~iG~R~SvFe~~p~~~vY--vp-------~g~~~ 95 (270)
T COG3718 31 FRLLRLAAGESATEETGDRERCLVLVTGKATVSAHG--ST----FGEIGTRMSVFERKPPDSVY--VP-------AGSAF 95 (270)
T ss_pred EEEEEccCCCcccccCCCceEEEEEEeeeEEEeecc--ch----HhhcccccccccCCCCCeEE--ec-------CCceE
Confidence 566778899987666655566777789999887522 10 111111 111111 0110 00 13678
Q ss_pred EEEEeceEEEEEEeHHH
Q 006374 518 ALISVTNVEAFAINTDD 534 (648)
Q Consensus 518 tv~A~~~~~ll~Ls~~d 534 (648)
++.|.+++++-.-+...
T Consensus 96 ~vtA~t~~~vAvC~AP~ 112 (270)
T COG3718 96 SVTATTDLEVAVCSAPG 112 (270)
T ss_pred EEEeecceEEEEEeCCC
Confidence 99999999887766544
No 65
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=32.97 E-value=1.2e+02 Score=27.68 Aligned_cols=56 Identities=14% Similarity=0.224 Sum_probs=37.4
Q ss_pred cCeeEEecCCeEEEccCCC-cCeEEEEEeeeEEEEEecC-CeeeeEEEEecCCCCeEech
Q 006374 441 CLKPVLYVQECCIVKEGDP-ICEMFFITQGTLLTTTTNG-GRNTSVFKKYLSTGDFWGEE 498 (648)
Q Consensus 441 ~l~~~~~~kge~I~~eGd~-~~~lyfI~~G~v~v~~~~~-~~~~~~~~~~l~~G~~fGe~ 498 (648)
.+....+.||...-..-.. .+++++|++|...+...+. +.+. ....+.+||.+-..
T Consensus 31 ~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~--~~~~l~~GD~~~ip 88 (146)
T smart00835 31 SAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKV--YDARLREGDVFVVP 88 (146)
T ss_pred EEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeE--EEEEecCCCEEEEC
Confidence 3445667888876544333 5689999999999887432 2222 24788999987543
No 66
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=31.76 E-value=9.8e+02 Score=28.78 Aligned_cols=42 Identities=10% Similarity=0.158 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhcccccchhhhHHHHH
Q 006374 371 EMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELC 417 (648)
Q Consensus 371 ~~lp~~L~~rv~~y~~~~~~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~ 417 (648)
.++|++|+.+|..++.... +..-.+++.+++....++...+.
T Consensus 357 ~~Lp~~Lr~~i~~~l~~~~-----l~~~~lF~~~s~~~l~~L~~~~~ 398 (823)
T PLN03192 357 DQLPKSICKSICQHLFLPV-----VEKVYLFKGVSREILLLLVTKMK 398 (823)
T ss_pred HHcCHHHHHHHHHHHHHHH-----HhhCcchhcCCHHHHHHHHHhhh
Confidence 4789999999987764322 22335677777777777666653
No 67
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=29.17 E-value=1.2e+02 Score=25.27 Aligned_cols=64 Identities=14% Similarity=0.128 Sum_probs=43.3
Q ss_pred cCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEechhhhccCCCCCCCCCCCcceEEE
Q 006374 441 CLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALI 520 (648)
Q Consensus 441 ~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~ 520 (648)
......+.||..+-.-...+.+..||++|.+.. +++ .+.+|++.=.-. .+..+..
T Consensus 25 ~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d---~~~--------~~~~G~~~~~p~--------------g~~h~~~ 79 (91)
T PF12973_consen 25 RVSLLRLEPGASLPRHRHPGGEEILVLEGELSD---GDG--------RYGAGDWLRLPP--------------GSSHTPR 79 (91)
T ss_dssp EEEEEEE-TTEEEEEEEESS-EEEEEEECEEEE---TTC--------EEETTEEEEE-T--------------TEEEEEE
T ss_pred EEEEEEECCCCCcCccCCCCcEEEEEEEEEEEE---CCc--------cCCCCeEEEeCC--------------CCccccC
Confidence 456678899998887777778888999999872 222 235777764332 2556778
Q ss_pred EeceEEEEE
Q 006374 521 SVTNVEAFA 529 (648)
Q Consensus 521 A~~~~~ll~ 529 (648)
+.++|.++.
T Consensus 80 s~~gc~~~v 88 (91)
T PF12973_consen 80 SDEGCLILV 88 (91)
T ss_dssp ESSCEEEEE
T ss_pred cCCCEEEEE
Confidence 889998875
No 68
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=26.67 E-value=3.9e+02 Score=22.55 Aligned_cols=38 Identities=11% Similarity=-0.047 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHHhCCCC
Q 006374 337 LLVLGNLTIYLQSGT---IKLEEIKSKAREIEQWRTFEMLS 374 (648)
Q Consensus 337 a~iig~i~~ii~~~~---~~~~~~~~~~~~i~~~m~~~~lp 374 (648)
+|..++++--+...+ ...++.++++++.++.++++++.
T Consensus 50 ~Ysl~~lgy~v~tFnDcpeA~~eL~~eI~eAK~dLr~kGv~ 90 (91)
T PF08285_consen 50 CYSLFTLGYGVATFNDCPEAAKELQKEIKEAKADLRKKGVD 90 (91)
T ss_pred HHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 455566665555555 45667777888888899888763
No 69
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=25.47 E-value=2.8e+02 Score=26.90 Aligned_cols=53 Identities=8% Similarity=-0.040 Sum_probs=33.4
Q ss_pred CeeEEecCCeEE---------EccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEe
Q 006374 442 LKPVLYVQECCI---------VKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 496 (648)
Q Consensus 442 l~~~~~~kge~I---------~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 496 (648)
+-...+.||... +++.....++|+|++|...+...+...+. ....+.+|+.+-
T Consensus 70 ~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~--~~~~v~pGd~v~ 131 (191)
T PRK04190 70 FGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEA--RWIEMEPGTVVY 131 (191)
T ss_pred EEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcE--EEEEECCCCEEE
Confidence 344567777742 33333345999999999998874332111 146788998864
No 70
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=25.06 E-value=1.9e+02 Score=31.24 Aligned_cols=52 Identities=17% Similarity=0.165 Sum_probs=35.0
Q ss_pred CeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecC-CeeeeEEEEecCCCCeEe
Q 006374 442 LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNG-GRNTSVFKKYLSTGDFWG 496 (648)
Q Consensus 442 l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~-~~~~~~~~~~l~~G~~fG 496 (648)
+....+.||...-.--....++.+|++|.+++...+. ++.. ...+++||.+-
T Consensus 69 ~~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~---~~~L~~GD~~~ 121 (367)
T TIGR03404 69 GVNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRNY---IDDVGAGDLWY 121 (367)
T ss_pred ceEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcEE---EeEECCCCEEE
Confidence 3445677877543222345689999999999988553 4421 35799999874
No 71
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=24.91 E-value=2.3e+02 Score=30.11 Aligned_cols=77 Identities=9% Similarity=0.052 Sum_probs=53.9
Q ss_pred EEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEechhhhccCCCCCCCCCCCcceEEEEece
Q 006374 445 VLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTN 524 (648)
Q Consensus 445 ~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~ 524 (648)
+.+++|..--..-..+..+|+|.+|.-.... |++ ....++||+|-.-+. ...+..+.++
T Consensus 255 q~L~~G~~t~~~r~T~s~Vf~VieG~G~s~i--g~~-----~~~W~~gD~f~vPsW--------------~~~~h~a~~d 313 (335)
T TIGR02272 255 QLLPKGFRTATYRSTDATVFCVVEGRGQVRI--GDA-----VFRFSPKDVFVVPSW--------------HPVRFEASDD 313 (335)
T ss_pred hccCCCCCCCCccccccEEEEEEeCeEEEEE--CCE-----EEEecCCCEEEECCC--------------CcEecccCCC
Confidence 5667777666666778899999999887766 333 257889999976553 1234455578
Q ss_pred EEEEEEeHHHHHHHHHhc
Q 006374 525 VEAFAINTDDLRAIVYQY 542 (648)
Q Consensus 525 ~~ll~Ls~~df~~ll~~~ 542 (648)
+.++.++-.-+++-+.-+
T Consensus 314 a~Lf~~~D~Pll~~LGl~ 331 (335)
T TIGR02272 314 AVLFSFSDRPVQQKLGLF 331 (335)
T ss_pred eEEEEecCHHHHHHhccc
Confidence 888888877777655433
No 72
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=24.36 E-value=1.1e+02 Score=23.32 Aligned_cols=23 Identities=17% Similarity=0.426 Sum_probs=19.8
Q ss_pred HhCCCCHHHHHHHHHHHHHHHHH
Q 006374 369 TFEMLSQSLQQRVRNHQQYVWQE 391 (648)
Q Consensus 369 ~~~~lp~~L~~rv~~y~~~~~~~ 391 (648)
-..++|++|++.|..|.+|.-++
T Consensus 7 lfqkLPDdLKrEvldY~EfLlek 29 (65)
T COG5559 7 LFQKLPDDLKREVLDYIEFLLEK 29 (65)
T ss_pred HHHHCcHHHHHHHHHHHHHHHHH
Confidence 34689999999999999998865
No 73
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=24.28 E-value=4.5e+02 Score=24.26 Aligned_cols=19 Identities=21% Similarity=0.193 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 006374 205 ILIYLLAAHVFGALWYFMA 223 (648)
Q Consensus 205 l~~~ll~~H~~aC~wy~~~ 223 (648)
++.+++..+..+|..+.-.
T Consensus 104 ~~~~~~~~a~~~~~lf~~~ 122 (200)
T PF00520_consen 104 LFIVLLFFACIGYQLFGGS 122 (200)
T ss_dssp HHHHHHHHHHHHHHHHTTT
T ss_pred cccccccccchhheecccc
Confidence 3333334444444444444
No 74
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=23.54 E-value=1.4e+02 Score=18.68 Aligned_cols=19 Identities=11% Similarity=-0.025 Sum_probs=16.2
Q ss_pred hhHHHHHhhhhhhhhhcCC
Q 006374 585 GSLYAKENILQDQKAEAGG 603 (648)
Q Consensus 585 ~~~~~a~ery~~~~~~~p~ 603 (648)
.....|.+-|+.+++++|+
T Consensus 14 g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 14 GDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp CHHHHHHHHHHHHHHHSTT
T ss_pred cCHHHHHHHHHHHHHHCcC
Confidence 4567899999999999997
No 75
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=23.17 E-value=2.9e+02 Score=20.08 Aligned_cols=39 Identities=13% Similarity=0.268 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Q 006374 325 ASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKARE 363 (648)
Q Consensus 325 ~i~~~i~G~~~fa~iig~i~~ii~~~~~~~~~~~~~~~~ 363 (648)
+.+..+..++....+.+.+..+-.+...+..++|..-++
T Consensus 10 s~~ai~~~l~~~p~i~~~i~~~~~~~~~em~~fk~~s~d 48 (53)
T PF01484_consen 10 STVAILSCLITVPSIYNDIQNFQSELDDEMEEFKEISDD 48 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555566666655555555555554443
No 76
>PHA03029 hypothetical protein; Provisional
Probab=22.92 E-value=2.9e+02 Score=22.14 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=28.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Q 006374 318 HEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEE 356 (648)
Q Consensus 318 ~~~E~i~~i~~~i~G~~~fa~iig~i~~ii~~~~~~~~~ 356 (648)
++.|.+|-++..++=.++.--+||-+-..+-+.++....
T Consensus 2 ~d~ei~~~ii~~iiyiilila~igiiwg~llsi~k~raa 40 (92)
T PHA03029 2 DDAEIVFLIIAIIIYIILILAIIGIIWGFLLSINKIRAA 40 (92)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888877777777788887777666554333
No 77
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=22.87 E-value=2e+02 Score=30.98 Aligned_cols=52 Identities=17% Similarity=0.002 Sum_probs=34.7
Q ss_pred CeeEEecCCeEEEccC-CCcCeEEEEEeeeEEEEEec-CCeeeeEEEEecCCCCeEe
Q 006374 442 LKPVLYVQECCIVKEG-DPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWG 496 (648)
Q Consensus 442 l~~~~~~kge~I~~eG-d~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fG 496 (648)
+....++||...-.-= ...+++++|++|.+++...+ +++.. ...+++||.+-
T Consensus 247 ~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~---~~~l~~GD~~~ 300 (367)
T TIGR03404 247 AAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNAR---TFDYQAGDVGY 300 (367)
T ss_pred EEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEE---EEEECCCCEEE
Confidence 4566778888653322 33678999999999988643 22221 36789999753
No 78
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=22.58 E-value=3.8e+02 Score=34.71 Aligned_cols=184 Identities=13% Similarity=0.094 Sum_probs=0.0
Q ss_pred hhHH--hHHHhhhcCCccchhheeeeccCCCCCccchhhHHHHHHHHHHhHHHHHHHHHHHHHhhccchhhhhchHHHHH
Q 006374 126 YLNS--FLKDLLSCLPIPQLVTSIIIITSKGSGFFPAMVWLKVVVIVQYVPRFYRIYRLYAVAESTSGILAQMKWVKSAC 203 (648)
Q Consensus 126 Ylk~--F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~llrl~~l~~~l~rl~ri~rl~~~~~~~~~~~~~~~~~~~~~ 203 (648)
|+++ .++|++-+.-.-.-.. .........|.|| ..|.+|-+|..+..+....++ ....+.+.
T Consensus 901 y~rn~w~~lDf~Vv~vslisl~-------~~~~~~~~ik~lr-------~lRaLRPLR~i~r~~~mr~Vv--~~l~~a~~ 964 (1592)
T KOG2301|consen 901 YFRNAWNWLDFVVVIVSLISLI-------ASLKILSLIKSLR-------ILRALRPLRALSRFPGMRVVV--LALFGGLP 964 (1592)
T ss_pred HHhhHHhhhhHHHhhhHHHHHH-------HhhhhhhHHHHHH-------HHHHHHHHHHHHHccccchhH--HHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhccCCccccccc----ccC--CCCccccccccCCCCcCCCCccccchh
Q 006374 204 CILIYLLAAHVFGALWYFMAIERETECWKKACREHTECYQNSFH----CYE--TVGNYTFLTGLCPTMIQDTTMFNFGMF 277 (648)
Q Consensus 204 ~l~~~ll~~H~~aC~wy~~~~~~~~~~w~~~c~~~~~c~~~~~~----~~~--~~~~~~W~~~~~~~~~~~~~~~~~g~y 277 (648)
.++..+++.|.+=+++-.+|.+ --.+..-.|++.... |.+ ...+..|.. .++...-.+..+||.-.
T Consensus 965 ~I~nv~lV~li~~fiFai~gv~-------lF~Gkf~~C~d~~~~~~~~~~~~y~~~~~~~~~-~~~~~~w~n~~~nfDnv 1036 (1592)
T KOG2301|consen 965 EIFNVLLVCLIFWFIFAIMGVQ-------LFAGKFYACNDPTVGSRLTRTEVYNKYECESLP-RAPRRWWNNRKFNFDNV 1036 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHCCCceeccCCCcchhhhhhhhhccCchhhhh-hccceEEeccccccccH
Q ss_pred HHHHhhccccccchHHHHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHH
Q 006374 278 QEAIQSGMVEEKAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLL 336 (648)
Q Consensus 278 ~~~l~~~~~~~~~~~~~Yi~slYwa~~TmttvGyGdi~p~~~~E~i~~i~~~i~G~~~f 336 (648)
.++... +-..+.+.-+..-+|=++- -+.++-|.+.+.+.+..+|-++..++|.++.
T Consensus 1037 ~~a~la--Lf~v~tf~GW~~i~~~~id-s~~~~~~p~~~~~~~~~~ffvifii~~~ff~ 1092 (1592)
T KOG2301|consen 1037 GNAMLA--LFQVATFKGWPDIMYAAID-SRGVNAQPILESNLYMYLFFVIFIIIGSFFT 1092 (1592)
T ss_pred HHHHHH--HHHHHhcCCHHHHHHHHhh-hhccCcCCcccccccceeehhhhhhHHhhhh
No 79
>PRK11171 hypothetical protein; Provisional
Probab=20.91 E-value=2.6e+02 Score=28.57 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=37.9
Q ss_pred cCeeEEecCCeEEEc-cCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEe
Q 006374 441 CLKPVLYVQECCIVK-EGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 496 (648)
Q Consensus 441 ~l~~~~~~kge~I~~-eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 496 (648)
.+....++||..+-. .....++.++|++|++.+.. +++ ...+.+||+.-
T Consensus 185 ~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~--~~~-----~~~l~~GD~i~ 234 (266)
T PRK11171 185 HVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL--NND-----WVEVEAGDFIW 234 (266)
T ss_pred EEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 556678999998876 35667799999999999865 344 36788999864
No 80
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=20.68 E-value=1.7e+02 Score=28.07 Aligned_cols=51 Identities=8% Similarity=0.062 Sum_probs=42.9
Q ss_pred hHHHHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHH
Q 006374 291 FKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLG 341 (648)
Q Consensus 291 ~~~~Yi~slYwa~~TmttvGyGdi~p~~~~E~i~~i~~~i~G~~~fa~iig 341 (648)
....|..=+|+|++.-||-+-.|+.+.+..=|-.+..=.+++.++.+.+++
T Consensus 129 ~~P~y~DFlYfsftiG~t~q~SDv~v~s~~~Rr~vl~hsllSF~Fnt~ilA 179 (180)
T PF07077_consen 129 WEPDYWDFLYFSFTIGMTFQTSDVNVTSRRMRRLVLLHSLLSFFFNTVILA 179 (180)
T ss_pred CCCCchhhhHHHHHHHhhccccCCCcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344688889999999999999999999988888888888888888777764
No 81
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=20.16 E-value=95 Score=35.02 Aligned_cols=71 Identities=13% Similarity=0.159 Sum_probs=51.7
Q ss_pred HHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCC
Q 006374 297 YCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTFEML 373 (648)
Q Consensus 297 ~slYwa~~TmttvGyGdi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~ii~~~~~~~~~~~~~~~~i~~~m~~~~l 373 (648)
.|+||++.....-|- ||.|.+...++..-++-++..++.+.--+|+++.+. .+.+..-++.+++..++..+
T Consensus 598 NsLWFsLgAFMQQG~-DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLT-----vErMvsPIESaEDLAkQteI 668 (897)
T KOG1054|consen 598 NSLWFSLGAFMQQGC-DISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT-----VERMVSPIESAEDLAKQTEI 668 (897)
T ss_pred HHHHHHHHHHHhcCC-CCCccccccceeccchhhhhhhhhhhhhhHHHHHHh-----HHhhcCcchhHHHHhhccee
Confidence 599999998887674 999999999999988888877777766677776664 23333344555566665555
No 82
>PRK10579 hypothetical protein; Provisional
Probab=20.05 E-value=5.5e+02 Score=21.85 Aligned_cols=62 Identities=10% Similarity=0.015 Sum_probs=42.8
Q ss_pred EEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEechhhhccCCCCCCCCCCCcceEEEEece
Q 006374 445 VLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTN 524 (648)
Q Consensus 445 ~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~ 524 (648)
=...|||+=+ |....+.-=|++|.+++..+...+ -..+..|+.|-..+- +.+.+++.+.
T Consensus 28 GVm~pGey~F--~T~~~E~MeivsG~l~V~Lpg~~e-----w~~~~aG~sF~Vpan--------------ssF~l~v~~~ 86 (94)
T PRK10579 28 GVMAEGEYTF--STAEPEEMTVISGALNVLLPGATD-----WQVYEAGEVFNVPGH--------------SEFHLQVAEP 86 (94)
T ss_pred EEEeeeEEEE--cCCCcEEEEEEeeEEEEECCCCcc-----cEEeCCCCEEEECCC--------------CeEEEEECcc
Confidence 3467788655 455567888999999998754433 367889999975541 5677777766
Q ss_pred EEE
Q 006374 525 VEA 527 (648)
Q Consensus 525 ~~l 527 (648)
+.-
T Consensus 87 t~Y 89 (94)
T PRK10579 87 TSY 89 (94)
T ss_pred eee
Confidence 543
Done!