Query 006374
Match_columns 648
No_of_seqs 469 out of 3092
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 23:19:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006374.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006374hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3beh_A MLL3241 protein; transm 100.0 1.7E-33 5.9E-38 300.1 10.8 177 292-543 159-335 (355)
2 3bpz_A Potassium/sodium hyperp 100.0 6.6E-30 2.3E-34 250.1 21.3 180 348-543 2-181 (202)
3 3ukn_A Novel protein similar t 100.0 8.8E-31 3E-35 258.2 14.8 186 344-543 1-186 (212)
4 2ptm_A Hyperpolarization-activ 100.0 9.4E-30 3.2E-34 248.1 21.5 181 348-543 1-181 (198)
5 3dn7_A Cyclic nucleotide bindi 99.9 3E-21 1E-25 186.7 14.8 174 418-620 6-181 (194)
6 1orq_C Potassium channel; volt 99.9 1.7E-21 5.7E-26 193.6 12.6 208 50-349 7-220 (223)
7 4ev0_A Transcription regulator 99.8 7.9E-19 2.7E-23 172.4 19.9 182 421-631 1-193 (216)
8 3dv8_A Transcriptional regulat 99.8 1.4E-18 4.9E-23 171.0 17.5 185 419-632 3-200 (220)
9 4f8a_A Potassium voltage-gated 99.8 2.7E-18 9.2E-23 160.2 16.3 134 397-543 5-138 (160)
10 3fx3_A Cyclic nucleotide-bindi 99.8 2.5E-18 8.4E-23 171.6 16.7 187 415-630 7-207 (237)
11 3e97_A Transcriptional regulat 99.8 7.1E-18 2.4E-22 167.6 17.9 183 418-631 5-205 (231)
12 3d0s_A Transcriptional regulat 99.8 3.1E-18 1.1E-22 169.7 15.0 185 418-631 5-207 (227)
13 3dkw_A DNR protein; CRP-FNR, H 99.8 5.6E-18 1.9E-22 167.7 16.2 186 418-631 8-208 (227)
14 1zyb_A Transcription regulator 99.8 7.8E-18 2.7E-22 167.8 16.3 188 417-632 16-217 (232)
15 2gau_A Transcriptional regulat 99.7 1.4E-17 4.9E-22 165.5 16.7 180 423-631 14-210 (232)
16 2fmy_A COOA, carbon monoxide o 99.7 9.9E-18 3.4E-22 165.3 13.5 177 419-631 4-197 (220)
17 3gyd_A CNMP-BD protein, cyclic 99.7 1.9E-16 6.6E-21 152.4 20.4 136 397-543 13-153 (187)
18 3iwz_A CAP-like, catabolite ac 99.7 8.4E-17 2.9E-21 159.5 18.4 190 418-630 10-216 (230)
19 1ft9_A Carbon monoxide oxidati 99.7 3.5E-17 1.2E-21 161.7 14.9 176 420-631 1-193 (222)
20 2oz6_A Virulence factor regula 99.7 1.9E-16 6.6E-21 154.2 17.9 176 430-630 1-193 (207)
21 3ryp_A Catabolite gene activat 99.7 2.5E-16 8.5E-21 153.7 18.7 177 426-630 3-196 (210)
22 3ocp_A PRKG1 protein; serine/t 99.7 8.7E-17 3E-21 146.6 14.1 126 403-543 7-132 (139)
23 2pqq_A Putative transcriptiona 99.7 8.3E-17 2.8E-21 147.9 13.5 141 418-587 4-145 (149)
24 3idb_B CAMP-dependent protein 99.7 2.2E-16 7.4E-21 147.8 15.9 128 405-543 24-151 (161)
25 1o5l_A Transcriptional regulat 99.7 7.5E-17 2.6E-21 158.4 12.5 167 424-619 4-176 (213)
26 2r9r_B Paddle chimera voltage 99.7 1.4E-17 4.7E-22 184.5 7.0 232 43-352 169-433 (514)
27 3kcc_A Catabolite gene activat 99.7 5.9E-16 2E-20 157.0 16.7 175 428-630 55-246 (260)
28 3mdp_A Cyclic nucleotide-bindi 99.7 4.8E-16 1.7E-20 141.6 13.6 116 419-543 6-123 (142)
29 1wgp_A Probable cyclic nucleot 99.7 9.7E-17 3.3E-21 145.7 8.5 125 419-543 6-130 (137)
30 3e6c_C CPRK, cyclic nucleotide 99.6 1E-15 3.6E-20 154.0 13.8 180 420-631 10-207 (250)
31 2z69_A DNR protein; beta barre 99.6 1.6E-15 5.6E-20 140.1 12.6 116 418-543 11-127 (154)
32 2a9h_A Voltage-gated potassium 99.6 1.4E-15 4.8E-20 140.9 10.6 65 293-357 83-147 (155)
33 3pna_A CAMP-dependent protein 99.6 5.7E-15 1.9E-19 137.1 14.1 116 413-543 32-147 (154)
34 3la7_A Global nitrogen regulat 99.6 1.3E-14 4.6E-19 145.3 16.7 172 432-630 30-222 (243)
35 2d93_A RAP guanine nucleotide 99.6 1.1E-15 3.7E-20 138.4 7.7 124 405-543 2-127 (134)
36 1vp6_A CNBD, cyclic-nucleotide 99.6 1.3E-14 4.4E-19 131.6 14.1 110 417-543 9-118 (138)
37 3shr_A CGMP-dependent protein 99.6 1.8E-14 6.1E-19 148.9 17.0 130 399-543 19-148 (299)
38 2bgc_A PRFA; bacterial infecti 99.6 3.7E-14 1.3E-18 141.5 18.0 175 428-631 2-200 (238)
39 3vou_A ION transport 2 domain 99.6 1.5E-14 5.2E-19 133.6 12.3 86 295-380 53-148 (148)
40 4h33_A LMO2059 protein; bilaye 99.6 3.1E-15 1.1E-19 136.1 7.4 93 294-386 43-135 (137)
41 3shr_A CGMP-dependent protein 99.5 7.4E-14 2.5E-18 144.2 15.9 118 415-543 153-272 (299)
42 1o7f_A CAMP-dependent RAP1 gua 99.5 4.3E-14 1.5E-18 155.5 14.8 130 404-543 27-157 (469)
43 4ava_A Lysine acetyltransferas 99.5 9.2E-14 3.1E-18 145.9 16.5 113 418-543 12-125 (333)
44 2ih3_C Voltage-gated potassium 99.5 4.2E-14 1.4E-18 126.0 9.2 58 294-351 61-118 (122)
45 3tnp_B CAMP-dependent protein 99.5 1.6E-13 5.4E-18 148.8 15.3 125 408-543 134-258 (416)
46 2qcs_B CAMP-dependent protein 99.5 5.9E-13 2E-17 136.7 18.1 117 416-543 154-272 (291)
47 3of1_A CAMP-dependent protein 99.5 1.6E-13 5.5E-18 136.9 13.1 112 417-543 5-116 (246)
48 2qcs_B CAMP-dependent protein 99.5 3.9E-13 1.4E-17 138.0 16.4 120 409-543 29-148 (291)
49 3of1_A CAMP-dependent protein 99.5 1.6E-13 5.4E-18 136.9 11.9 114 416-543 122-235 (246)
50 3b02_A Transcriptional regulat 99.4 5.1E-13 1.8E-17 128.9 11.1 151 445-631 2-169 (195)
51 4din_B CAMP-dependent protein 99.4 6E-13 2.1E-17 142.6 12.7 120 409-543 120-239 (381)
52 3tnp_B CAMP-dependent protein 99.4 8.1E-13 2.8E-17 143.2 13.7 115 418-543 266-387 (416)
53 3eff_K Voltage-gated potassium 99.4 6.1E-13 2.1E-17 121.5 10.6 59 294-352 40-98 (139)
54 4din_B CAMP-dependent protein 99.4 4.2E-13 1.5E-17 143.7 10.9 118 415-543 244-363 (381)
55 1o7f_A CAMP-dependent RAP1 gua 99.4 3.3E-12 1.1E-16 140.5 16.0 125 406-544 324-450 (469)
56 2zcw_A TTHA1359, transcription 99.4 1.5E-12 5.2E-17 126.2 9.5 158 438-632 1-177 (202)
57 4f7z_A RAP guanine nucleotide 99.3 1.2E-11 4.2E-16 148.5 15.5 128 405-544 28-158 (999)
58 3cf6_E RAP guanine nucleotide 99.3 1E-11 3.5E-16 142.3 13.9 132 398-544 12-145 (694)
59 2q67_A Potassium channel prote 99.3 2E-11 7E-16 107.1 12.0 61 295-355 50-110 (114)
60 2k1e_A Water soluble analogue 99.3 1.7E-12 5.9E-17 112.0 3.2 58 294-351 40-97 (103)
61 4f7z_A RAP guanine nucleotide 99.2 1.4E-10 4.8E-15 139.3 15.8 115 414-542 332-448 (999)
62 3ouf_A Potassium channel prote 99.2 1.1E-10 3.7E-15 99.3 9.8 54 295-348 33-86 (97)
63 3ldc_A Calcium-gated potassium 99.1 8.9E-11 3.1E-15 96.6 6.9 54 294-347 28-81 (82)
64 3pjs_K KCSA, voltage-gated pot 99.1 5.7E-12 2E-16 118.5 -1.9 62 294-355 67-128 (166)
65 3rvy_A ION transport protein; 99.0 3.2E-10 1.1E-14 116.3 8.0 62 292-353 178-245 (285)
66 1xl4_A Inward rectifier potass 98.9 1.5E-09 5E-14 111.5 9.5 57 294-350 82-138 (301)
67 1p7b_A Integral membrane chann 98.9 1.1E-09 3.9E-14 113.4 6.6 59 294-352 96-154 (333)
68 3um7_A Potassium channel subfa 98.8 5.7E-09 1.9E-13 106.7 9.0 56 294-349 115-170 (309)
69 2qks_A KIR3.1-prokaryotic KIR 98.7 1.3E-08 4.4E-13 105.2 7.3 59 294-352 78-136 (321)
70 3sya_A G protein-activated inw 98.6 1.3E-07 4.5E-12 97.8 11.2 58 294-351 91-150 (340)
71 4gx0_A TRKA domain protein; me 98.6 1.1E-07 3.8E-12 106.9 9.5 53 295-347 52-105 (565)
72 3um7_A Potassium channel subfa 98.5 2.9E-08 1E-12 101.4 4.0 60 294-353 224-289 (309)
73 3ukm_A Potassium channel subfa 98.5 8.4E-08 2.9E-12 96.6 7.1 55 294-348 93-147 (280)
74 3spc_A Inward-rectifier K+ cha 98.5 4.3E-07 1.5E-11 94.1 10.7 58 294-351 94-153 (343)
75 3ukm_A Potassium channel subfa 98.4 1E-07 3.4E-12 96.0 3.4 54 295-348 202-262 (280)
76 1lnq_A MTHK channels, potassiu 98.3 3.8E-08 1.3E-12 103.2 -3.0 56 295-350 46-101 (336)
77 4dxw_A Navrh, ION transport pr 97.7 0.00012 4.3E-09 71.9 10.8 57 293-349 164-225 (229)
78 2kyh_A KVAP, voltage-gated pot 95.6 0.0063 2.1E-07 55.2 3.2 76 53-143 23-99 (147)
79 1ors_C Potassium channel; volt 93.4 0.04 1.4E-06 48.9 2.9 76 50-142 5-83 (132)
80 3fjs_A Uncharacterized protein 71.8 21 0.00073 29.8 9.2 67 442-529 38-104 (114)
81 2ozj_A Cupin 2, conserved barr 69.5 25 0.00086 29.0 9.2 66 444-530 42-107 (114)
82 3rns_A Cupin 2 conserved barre 69.3 16 0.00056 34.8 8.9 69 441-530 38-106 (227)
83 2pfw_A Cupin 2, conserved barr 64.1 46 0.0016 27.3 9.8 68 442-530 36-103 (116)
84 3lwc_A Uncharacterized protein 63.3 52 0.0018 27.7 10.0 46 444-497 44-89 (119)
85 1yhf_A Hypothetical protein SP 61.4 46 0.0016 27.2 9.3 68 442-530 42-109 (115)
86 3kg2_A Glutamate receptor 2; I 59.3 12 0.00041 43.0 6.7 55 294-349 563-617 (823)
87 1yfu_A 3-hydroxyanthranilate-3 50.5 22 0.00074 32.5 5.4 60 459-535 54-114 (174)
88 4e2g_A Cupin 2 conserved barre 49.5 71 0.0024 26.5 8.6 49 441-496 42-90 (126)
89 1o5u_A Novel thermotoga mariti 46.9 1.2E+02 0.0039 24.7 10.4 48 441-496 32-79 (101)
90 1dgw_A Canavalin; duplicated s 46.8 26 0.00089 32.0 5.6 53 442-497 43-95 (178)
91 3h8u_A Uncharacterized conserv 46.2 27 0.00092 29.3 5.3 50 441-496 40-90 (125)
92 2bnm_A Epoxidase; oxidoreducta 44.9 63 0.0021 29.5 8.1 50 444-496 121-173 (198)
93 3rns_A Cupin 2 conserved barre 44.0 76 0.0026 30.0 8.7 69 441-530 154-223 (227)
94 2q30_A Uncharacterized protein 43.5 92 0.0031 24.9 8.1 68 443-530 36-105 (110)
95 2i45_A Hypothetical protein; n 42.8 29 0.00098 28.3 4.8 68 447-534 35-102 (107)
96 2gu9_A Tetracenomycin polyketi 42.0 53 0.0018 26.5 6.4 48 442-496 23-73 (113)
97 3bcw_A Uncharacterized protein 41.6 23 0.00078 30.4 4.0 46 445-497 54-99 (123)
98 1v70_A Probable antibiotics sy 41.0 62 0.0021 25.4 6.6 47 443-496 31-78 (105)
99 3d0j_A Uncharacterized protein 39.5 54 0.0018 28.8 6.0 62 455-533 45-110 (140)
100 2fqp_A Hypothetical protein BP 37.8 20 0.00068 28.8 2.9 50 443-497 21-71 (97)
101 3es1_A Cupin 2, conserved barr 37.5 32 0.0011 31.4 4.5 48 442-495 81-128 (172)
102 3es4_A Uncharacterized protein 36.9 26 0.0009 29.8 3.6 45 446-497 48-92 (116)
103 1zvf_A 3-hydroxyanthranilate 3 36.4 36 0.0012 31.1 4.5 87 433-535 12-116 (176)
104 4e2q_A Ureidoglycine aminohydr 36.3 70 0.0024 31.4 7.0 70 443-532 73-142 (266)
105 4axo_A EUTQ, ethanolamine util 35.9 1.1E+02 0.0039 27.1 7.8 52 459-531 83-134 (151)
106 3d82_A Cupin 2, conserved barr 35.5 90 0.0031 24.5 6.7 51 460-531 50-100 (102)
107 3nw4_A Gentisate 1,2-dioxygena 35.1 88 0.003 32.2 7.9 79 443-542 282-360 (368)
108 4b29_A Dimethylsulfoniopropion 33.7 62 0.0021 30.6 5.9 45 447-497 139-183 (217)
109 2d40_A Z3393, putative gentisa 33.2 1.3E+02 0.0043 30.8 8.8 76 444-540 272-347 (354)
110 3ibm_A Cupin 2, conserved barr 32.1 74 0.0025 28.5 6.1 48 442-496 58-105 (167)
111 2o1q_A Putative acetyl/propion 31.6 70 0.0024 28.0 5.7 52 441-497 45-96 (145)
112 2pyt_A Ethanolamine utilizatio 31.0 1.4E+02 0.0049 25.5 7.6 45 444-497 61-105 (133)
113 2kxw_B Sodium channel protein 29.9 42 0.0014 20.6 2.6 19 564-582 5-23 (27)
114 3jzv_A Uncharacterized protein 29.8 65 0.0022 29.0 5.3 48 443-497 56-103 (166)
115 3kgz_A Cupin 2 conserved barre 29.1 68 0.0023 28.5 5.2 46 444-496 48-93 (156)
116 2l53_B CAM, voltage-gated sodi 28.7 46 0.0016 21.2 2.7 19 564-582 5-23 (31)
117 1sfn_A Conserved hypothetical 28.1 2.1E+02 0.0073 27.2 9.1 65 444-531 54-118 (246)
118 1fi2_A Oxalate oxidase, germin 27.9 1E+02 0.0034 28.5 6.4 54 442-497 74-131 (201)
119 1uij_A Beta subunit of beta co 27.4 66 0.0022 33.8 5.5 55 440-497 49-103 (416)
120 4i4a_A Similar to unknown prot 27.2 1.1E+02 0.0037 25.4 6.1 79 443-542 37-119 (128)
121 2qnk_A 3-hydroxyanthranilate 3 26.6 66 0.0023 31.7 4.8 43 449-495 38-83 (286)
122 3lag_A Uncharacterized protein 26.5 25 0.00086 28.6 1.6 51 442-496 19-70 (98)
123 3bu7_A Gentisate 1,2-dioxygena 26.3 46 0.0016 34.7 4.0 49 443-497 126-174 (394)
124 1lr5_A Auxin binding protein 1 26.1 67 0.0023 28.4 4.6 52 443-497 44-100 (163)
125 1o4t_A Putative oxalate decarb 26.0 91 0.0031 26.5 5.4 47 443-496 60-107 (133)
126 3l2h_A Putative sugar phosphat 25.9 74 0.0025 28.0 4.9 47 443-496 49-97 (162)
127 1y9q_A Transcriptional regulat 25.9 1.3E+02 0.0044 27.2 6.7 46 444-496 108-155 (192)
128 3i7d_A Sugar phosphate isomera 25.5 80 0.0027 28.1 5.0 48 443-497 46-95 (163)
129 1sfn_A Conserved hypothetical 25.4 99 0.0034 29.6 6.0 51 440-497 165-216 (246)
130 2ea7_A 7S globulin-1; beta bar 24.9 76 0.0026 33.5 5.4 55 440-497 61-115 (434)
131 2cav_A Protein (canavalin); vi 24.7 79 0.0027 33.5 5.5 55 440-497 86-140 (445)
132 2q1z_B Anti-sigma factor CHRR, 24.5 1E+02 0.0035 28.4 5.7 66 440-530 125-192 (195)
133 2vpv_A Protein MIF2, MIF2P; nu 24.3 69 0.0023 29.0 4.3 46 445-497 93-140 (166)
134 3h7j_A Bacilysin biosynthesis 23.8 1.2E+02 0.0042 28.8 6.4 48 441-495 35-82 (243)
135 1vj2_A Novel manganese-contain 23.6 86 0.0029 26.3 4.7 47 443-496 51-97 (126)
136 2opk_A Hypothetical protein; p 23.4 85 0.0029 25.9 4.5 35 458-497 51-85 (112)
137 3h7j_A Bacilysin biosynthesis 23.3 2.6E+02 0.0089 26.4 8.6 48 444-498 149-197 (243)
138 3bu7_A Gentisate 1,2-dioxygena 22.3 1.8E+02 0.0061 30.2 7.5 79 443-542 297-378 (394)
139 2vqa_A SLL1358 protein, MNCA; 22.3 1.2E+02 0.0041 30.7 6.3 51 443-496 55-107 (361)
140 3ht1_A REMF protein; cupin fol 21.9 87 0.003 26.6 4.4 47 445-496 44-90 (145)
141 2f4p_A Hypothetical protein TM 21.6 1.3E+02 0.0043 26.2 5.5 48 443-496 51-98 (147)
142 2b8m_A Hypothetical protein MJ 21.3 78 0.0027 25.9 3.9 45 445-496 32-77 (117)
143 1j58_A YVRK protein; cupin, de 21.1 1.2E+02 0.0042 31.0 6.1 52 442-496 81-133 (385)
144 3cew_A Uncharacterized cupin p 20.9 1.2E+02 0.0041 25.1 5.0 47 443-496 29-77 (125)
145 1sq4_A GLXB, glyoxylate-induce 20.8 1.3E+02 0.0046 29.3 6.0 51 440-497 191-242 (278)
No 1
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=100.00 E-value=1.7e-33 Score=300.06 Aligned_cols=177 Identities=19% Similarity=0.337 Sum_probs=56.0
Q ss_pred HHHHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhC
Q 006374 292 KKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTFE 371 (648)
Q Consensus 292 ~~~Yi~slYwa~~TmttvGyGdi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~ii~~~~~~~~~~~~~~~~i~~~m~~~ 371 (648)
+..|..|+||+++|||||||||++|.|..|+++++++|++|.+++++.+|.+++.+.+. .++
T Consensus 159 f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~------~~~------------ 220 (355)
T 3beh_A 159 FGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQE------VRR------------ 220 (355)
T ss_dssp HSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH------------
T ss_pred cccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH------------
Confidence 45688999999999999999999999999999999999999999999999998776431 110
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhcccccchhhhHHHHHHHHhcCCcccccCCHHHHHHHHhcCeeEEecCCe
Q 006374 372 MLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQEC 451 (648)
Q Consensus 372 ~lp~~L~~rv~~y~~~~~~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge 451 (648)
+++.+ +.+.++++++|+++++++++.++..++++.++|||
T Consensus 221 ----------~~~~~------------------------------~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge 260 (355)
T 3beh_A 221 ----------GDFVR------------------------------NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGA 260 (355)
T ss_dssp ----------HHHHH------------------------------HHC--------------------------------
T ss_pred ----------Hhhcc------------------------------cchhhhcccccccCCHHHHHHHHHhceEEEECCCC
Confidence 00100 23567888999999999999999999999999999
Q ss_pred EEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEechhhhccCCCCCCCCCCCcceEEEEeceEEEEEEe
Q 006374 452 CIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAIN 531 (648)
Q Consensus 452 ~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls 531 (648)
.|+++||+++++|||.+|.|+++..+ + ..+++|++|||.+++ .+. ++.++++|.++|+++.++
T Consensus 261 ~I~~~G~~~~~ly~I~~G~v~v~~~~--~------~~l~~G~~fGe~~~l---~~~------~~~~~~~A~~~~~l~~i~ 323 (355)
T 3beh_A 261 VICRIGEPGDRMFFVVEGSVSVATPN--P------VELGPGAFFGEMALI---SGE------PRSATVSAATTVSLLSLH 323 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEeCCCcCceEEEEEeeEEEEEECC--e------eEECCCCEEeehHHh---CCC------CcceEEEECccEEEEEEe
Confidence 99999999999999999999998754 1 578999999999874 222 378999999999999999
Q ss_pred HHHHHHHHHhch
Q 006374 532 TDDLRAIVYQYW 543 (648)
Q Consensus 532 ~~df~~ll~~~P 543 (648)
+++|+++++++|
T Consensus 324 ~~~f~~ll~~~p 335 (355)
T 3beh_A 324 SADFQMLCSSSP 335 (355)
T ss_dssp ------------
T ss_pred HHHHHHHHHHCH
Confidence 999999999994
No 2
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.97 E-value=6.6e-30 Score=250.07 Aligned_cols=180 Identities=18% Similarity=0.328 Sum_probs=164.6
Q ss_pred HhccccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhcccccchhhhHHHHHHHHhcCCccc
Q 006374 348 QSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLKKVPMF 427 (648)
Q Consensus 348 ~~~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~~~~L~~i~~F 427 (648)
++++.+..+|+++|+.+++||+.+++|++|+.||++||+|.|+ .++.+++++++.||+.||.++..+.+.++++++++|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f 80 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREKIVNFNCRKLVASMPLF 80 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCch
Confidence 4788899999999999999999999999999999999999997 478899999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEechhhhccCCCC
Q 006374 428 QMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPD 507 (648)
Q Consensus 428 ~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~ 507 (648)
.+++++++..++..+++..|+||++|+++||+++++|||.+|.|+++..+ |++ ..+++|++||+.+++. +
T Consensus 81 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~-g~~-----~~l~~G~~fGe~~~~~---~- 150 (202)
T 3bpz_A 81 ANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKG-NKE-----MKLSDGSYFGEICLLT---R- 150 (202)
T ss_dssp HTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEECTT-SCC-----EEEETTCEECHHHHHH---C-
T ss_pred hcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEECC-CeE-----EEEcCCCEeccHHHhc---C-
Confidence 99999999999999999999999999999999999999999999998644 442 3579999999998752 1
Q ss_pred CCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhch
Q 006374 508 PLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 543 (648)
Q Consensus 508 ~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P 543 (648)
.++.++++|.++|+++.|++++|.++++++|
T Consensus 151 -----~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p 181 (202)
T 3bpz_A 151 -----GRRTASVRADTYCRLYSLSVDNFNEVLEEYP 181 (202)
T ss_dssp -----SBCSSEEEESSCEEEEEEEHHHHHHHHHHSG
T ss_pred -----CCcccEEEEeeEEEEEEEEHHHHHHHHHHCH
Confidence 1378899999999999999999999999994
No 3
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.97 E-value=8.8e-31 Score=258.23 Aligned_cols=186 Identities=20% Similarity=0.367 Sum_probs=161.7
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhcccccchhhhHHHHHHHHhcC
Q 006374 344 TIYLQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLKK 423 (648)
Q Consensus 344 ~~ii~~~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~~~~L~~ 423 (648)
|+++++++.+..+|+++|+.+++||+++++|++||.||++||+|.|..+++.+++++++.||++||.++..+++..++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 578999999999999999999999999999999999999999999998899999999999999999999999988877 7
Q ss_pred CcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEechhhhcc
Q 006374 424 VPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSA 503 (648)
Q Consensus 424 i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~ 503 (648)
+|+|.+++++++..++..++++.|+|||+|+++||+++++|||.+|.|+++. +| . .+..+++|++||+.+++
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~-~~-~----~~~~l~~G~~fGe~~~~-- 151 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK-DN-T----VLAILGKGDLIGSDSLT-- 151 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES-SS-C----EEEEECTTCEEECSCCS--
T ss_pred cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE-CC-e----EEEEecCCCCcCcHHhc--
Confidence 9999999999999999999999999999999999999999999999999986 32 2 27999999999998874
Q ss_pred CCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhch
Q 006374 504 LDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 543 (648)
Q Consensus 504 l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P 543 (648)
.+. .+++.++++|.++|+++.|++++|.++++++|
T Consensus 152 -~~~----~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p 186 (212)
T 3ukn_A 152 -KEQ----VIKTNANVKALTYCDLQYISLKGLREVLRLYP 186 (212)
T ss_dssp -SSS----CCBBCSEEEESSCEEEEEEEHHHHHHHHHHCH
T ss_pred -cCC----CCCcceEEEEcccEEEEEEeHHHHHHHHHHCh
Confidence 211 11488999999999999999999999999994
No 4
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.97 E-value=9.4e-30 Score=248.09 Aligned_cols=181 Identities=15% Similarity=0.317 Sum_probs=166.5
Q ss_pred HhccccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhcccccchhhhHHHHHHHHhcCCccc
Q 006374 348 QSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLKKVPMF 427 (648)
Q Consensus 348 ~~~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~~~~L~~i~~F 427 (648)
++++.+..+|+++|+.+++||+++++|++|+.||++||+|.|+ .++.+++++++.||++||.++..+++.++++++++|
T Consensus 1 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f 79 (198)
T 2ptm_A 1 GAMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANYNCRDLVASVPFF 79 (198)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcch
Confidence 3678899999999999999999999999999999999999997 478899999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEechhhhccCCCC
Q 006374 428 QMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPD 507 (648)
Q Consensus 428 ~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~ 507 (648)
.+++++++..++..++++.|+||++|+++||+++++|||.+|.|+++..+ |+ .+..+++|++||+.+++. +
T Consensus 80 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~~~-g~----~~~~l~~G~~fGe~~~~~---~- 150 (198)
T 2ptm_A 80 VGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSD-GV----IATSLSDGSYFGEICLLT---R- 150 (198)
T ss_dssp TTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEECTT-SC----EEEEECTTCEESCHHHHH---S-
T ss_pred hcCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEecC-Ce----EEEEecCCCEechHHHcC---C-
Confidence 99999999999999999999999999999999999999999999999844 33 268999999999998752 1
Q ss_pred CCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhch
Q 006374 508 PLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 543 (648)
Q Consensus 508 ~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P 543 (648)
.++.++++|.++|+++.|++++|.++++++|
T Consensus 151 -----~~~~~~~~a~~~~~l~~i~~~~f~~ll~~~p 181 (198)
T 2ptm_A 151 -----ERRVASVKCETYCTLFSLSVQHFNQVLDEFP 181 (198)
T ss_dssp -----SCCSSEEEESSCEEEEEEEHHHHHHHHHHCH
T ss_pred -----CccceEEEEeeEEEEEEEeHHHHHHHHHHCh
Confidence 2378999999999999999999999999994
No 5
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.86 E-value=3e-21 Score=186.69 Aligned_cols=174 Identities=11% Similarity=0.111 Sum_probs=125.7
Q ss_pred HHHhcCCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEe-cCCeeeeEEEEecCCCCeEe
Q 006374 418 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTT-NGGRNTSVFKKYLSTGDFWG 496 (648)
Q Consensus 418 ~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~-~~~~~~~~~~~~l~~G~~fG 496 (648)
..++++++.|.++++++++.++..++.+.|+||++|+++||+++++|||.+|.|+++.. .+|++.+ +..+++|++||
T Consensus 6 ~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~--~~~~~~g~~~g 83 (194)
T 3dn7_A 6 TALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQT--TQFAIENWWLS 83 (194)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEEC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEE--EEEccCCcEEe
Confidence 45677789999999999999999999999999999999999999999999999999974 4566654 78999999999
Q ss_pred ch-hhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhchhhhhhhhhhHHHHhhhchhhhhhHHhHHHHHH
Q 006374 497 EE-LATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAW 575 (648)
Q Consensus 497 e~-~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~ 575 (648)
+. +++ ++ .++.++++|+++|+++.|++++|.++++++ |.+.......+++.+
T Consensus 84 e~~~~~---~~------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~~~~~l 136 (194)
T 3dn7_A 84 DYMAFQ---KQ------QPADFYIQSVENCELLSITYTEQENLFERI------------------PALERYFRLVYQKSF 136 (194)
T ss_dssp CHHHHH---HT------CBCSSEEEESSCEEEEEEEHHHHHHHHHHC------------------TTHHHHHHHHHHHHH
T ss_pred ehHHHh---cC------CCCceEEEEECCEEEEEEeHHHHHHHHHhC------------------HHHHHHHHHHHHHHH
Confidence 86 543 22 237889999999999999999999999999 777777788888888
Q ss_pred HHHHhhhhhhhHHHHHhhhhhhhhhcCCCCCcchhHHHHHHHHHH
Q 006374 576 CRYKKRKLEGSLYAKENILQDQKAEAGGKPSKFGTAIYATQFFTY 620 (648)
Q Consensus 576 ~~~~~r~~~~~~~~a~ery~~~~~~~p~~~~~~~~~~iAs~~~~~ 620 (648)
....+|...+...++++||..++.++|++..++|+.+||+-+...
T Consensus 137 ~~~~~~~~~l~~~~~~~Rl~~~L~~~~~~~~~~t~~~iA~~lG~s 181 (194)
T 3dn7_A 137 AAAQLRSKFQHMYSKEEQYHNFSSRFPEFIQRVPQYLLASYLGFT 181 (194)
T ss_dssp HHHHHHHHHHHHC--------------------------------
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHChHHHHHCCHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999988653
No 6
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.85 E-value=1.7e-21 Score=193.59 Aligned_cols=208 Identities=12% Similarity=0.119 Sum_probs=132.2
Q ss_pred CcchHHHHHHHHHHHHhhcceeEEEEEEcCCcceeeecccceeehhhhHHHHHHhhhh---hc--CCccccChhHhhhhh
Q 006374 50 GPFWNWIWLAVRIISTSLDPLFFYIFVVNDHKKCVDLDIKLAIIAISLRTIFDFFNII---YS--SSTPHKHSRANAKKC 124 (648)
Q Consensus 50 s~~Wd~~~~~~~l~~~~~~Pl~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~D~~f~~---f~--~~~~v~d~~~Ia~~~ 124 (648)
++.||.+++++++++++..++... ...+......+.++|.++|++|.+ .+ ... -.+
T Consensus 7 ~~~f~~~i~~lil~~~~~~~~~~~----------~~~~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~~-------~~~-- 67 (223)
T 1orq_C 7 HPLVELGVSYAALLSVIVVVVECT----------MQLSGEYLVRLYLVDLILVIILWADYAYRAYKSG-------DPA-- 67 (223)
T ss_dssp SHHHHTHHHHHHHHHHHHHHHHHH----------HHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHTTS-------CHH--
T ss_pred CchHHHHHHHHHHHHHHHHHHHHh----------cccChhhhhHHHHHHHHHHHHHHHHHHHHHcccc-------cHH--
Confidence 344899999999998887664311 011222334677899999999999 22 321 136
Q ss_pred hhhHHhHHHhhhcCCccchhheeeeccCCCCCccchhhHHHHHHHHHHhHHHHHHHHHHHHHhhccchhhhhchHHHHHH
Q 006374 125 FYLNSFLKDLLSCLPIPQLVTSIIIITSKGSGFFPAMVWLKVVVIVQYVPRFYRIYRLYAVAESTSGILAQMKWVKSACC 204 (648)
Q Consensus 125 ~Ylk~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~llrl~~l~~~l~rl~ri~rl~~~~~~~~~~~~~~~~~~~~~~ 204 (648)
+|+|++++|+++++|++..... ..+ .......+++|++ |++|+.|+.+...+....+.+......+..
T Consensus 68 ~y~~~~iiDllailP~~~~~~~----~~~-~~~~~~lr~lRll-------RllR~~r~~~~~~~~~~~l~~~~~~~~l~~ 135 (223)
T 1orq_C 68 GYVKKTLYEIPALVPAGLLALI----EGH-LAGLGLFRLVRLL-------RFLRILLIISRGSKFLSAIADAADKIRFYH 135 (223)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHH----HHH-HHTTTCHHHHHHH-------HHHHHHHHHHSCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHH----hcc-hhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998899999999999865431 000 0001123333332 333333333211111111111100011222
Q ss_pred HH-HHHHHHHHHHHHHHHHhhhhhhHHHHHhhhccCCcccccccccCCCCccccccccCCCCcCCCCccccchhHHHHhh
Q 006374 205 IL-IYLLAAHVFGALWYFMAIERETECWKKACREHTECYQNSFHCYETVGNYTFLTGLCPTMIQDTTMFNFGMFQEAIQS 283 (648)
Q Consensus 205 l~-~~ll~~H~~aC~wy~~~~~~~~~~w~~~c~~~~~c~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~g~y~~~l~~ 283 (648)
++ +.+++.|+.||++|++.. ++++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~e~---------------------------~~~~---------------------------- 160 (223)
T 1orq_C 136 LFGAVMLTVLYGAFAIYIVEY---------------------------PDPN---------------------------- 160 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS---------------------------SSTT----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHh---------------------------CCcC----------------------------
Confidence 33 334678999999988621 0000
Q ss_pred ccccccchHHHHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006374 284 GMVEEKAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQS 349 (648)
Q Consensus 284 ~~~~~~~~~~~Yi~slYwa~~TmttvGyGdi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~ii~~ 349 (648)
+....|..|+||+++|||||||||++|.|..|++++++.|++|.+++|+.+|.+++.+++
T Consensus 161 ------~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 161 ------SSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp ------CSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------CCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112368899999999999999999999999999999999999999999999999998874
No 7
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.81 E-value=7.9e-19 Score=172.42 Aligned_cols=182 Identities=16% Similarity=0.176 Sum_probs=151.2
Q ss_pred hcCCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEe-cCCeeeeEEEEecCCCCeEechh
Q 006374 421 LKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTT-NGGRNTSVFKKYLSTGDFWGEEL 499 (648)
Q Consensus 421 L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~-~~~~~~~~~~~~l~~G~~fGe~~ 499 (648)
|+++|+|.++++++++.++..++.+.|+||++|+++||+++++|||.+|.|+++.. .+|++.+ +..+++|++||+.+
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G~~~ 78 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERT--LALLGPGELFGEMS 78 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEE--EEEECTTCEECHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEEeehh
Confidence 46789999999999999999999999999999999999999999999999999975 4555544 79999999999988
Q ss_pred hhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhchhhhhhhhhhHHHHhhhchhhhhhHHhHHHHHHHHHH
Q 006374 500 ATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYK 579 (648)
Q Consensus 500 l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~~ 579 (648)
++ .+. ++.++++|.++|+++.|++++|.++++++ |.+.......+...+....
T Consensus 79 ~~---~~~------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~~~~~~~~ 131 (216)
T 4ev0_A 79 LL---DEG------ERSASAVAVEDTELLALFREDYLALIRRL------------------PLVAHNLAALLARRLREAD 131 (216)
T ss_dssp HH---HCC------BCSSEEEESSSEEEEEEEHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHH
T ss_pred hc---CCC------CcceEEEEcCCEEEEEEcHHHHHHHHHHC------------------cHHHHHHHHHHHHHHHHHH
Confidence 74 222 37889999999999999999999999999 5666666666777778888
Q ss_pred hhhhhhhHHHHHhhhhhhhh----hcCCCCCcchhHHHHHHHH------HHHHHHhhhcCCC
Q 006374 580 KRKLEGSLYAKENILQDQKA----EAGGKPSKFGTAIYATQFF------TYVRRSVKRNGGL 631 (648)
Q Consensus 580 ~r~~~~~~~~a~ery~~~~~----~~p~~~~~~~~~~iAs~~~------~~~~~~~~~~~~~ 631 (648)
++.......++++|+..++. +.+.+..++++..||+.+. +.+++-.++.|..
T Consensus 132 ~~~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I 193 (216)
T 4ev0_A 132 LELDLLSFEEARNRVAYALLKLLRQGLGPLFQIRHHELAALAGTSRETVSRVLHALAEEGVV 193 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCccCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCE
Confidence 89999999999999998874 4567788999999999883 3344444555544
No 8
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.79 E-value=1.4e-18 Score=171.03 Aligned_cols=185 Identities=10% Similarity=0.051 Sum_probs=153.2
Q ss_pred HHhcCCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEe-cCCeeeeEEEEecCCCCe--E
Q 006374 419 EVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTT-NGGRNTSVFKKYLSTGDF--W 495 (648)
Q Consensus 419 ~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~-~~~~~~~~~~~~l~~G~~--f 495 (648)
++++++|+|.++++++++.++..++.+.|+||++|+++||+++++|||.+|.|+++.. .+|++.+ +..+++|++ |
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~~~ 80 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREIT--LYRLFDMDMCLL 80 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEESG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEE--EEecCCCCeeeh
Confidence 5789999999999999999999999999999999999999999999999999999974 3455544 799999999 6
Q ss_pred echhhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhchhhhhhhhhhHHHHhhhchhhhhhHHhHHHHHH
Q 006374 496 GEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAW 575 (648)
Q Consensus 496 Ge~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~ 575 (648)
|+.+++ .+. ++.++++|+++|+++.|++++|.++++++ |.+.......+...+
T Consensus 81 g~~~~~---~~~------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~~~l 133 (220)
T 3dv8_A 81 SASCIM---RSI------QFEVTIEAEKDTDLWIIPAEIYKGIMKDS------------------APVANYTNELMATRF 133 (220)
T ss_dssp GGGGGC---TTC------CCCCEEEESSCEEEEEEEHHHHHHHHHHC------------------HHHHHHHHHHHHHHH
T ss_pred hHHHHh---CCC------CCceEEEEeeeeEEEEEEHHHHHHHHHHC------------------HHHHHHHHHHHHHHH
Confidence 888763 222 37889999999999999999999999999 555555566666677
Q ss_pred HHHHhhhhhhhHHHHHhhhhhhhhhcCC----CCCcchhHHHHHHH------HHHHHHHhhhcCCCC
Q 006374 576 CRYKKRKLEGSLYAKENILQDQKAEAGG----KPSKFGTAIYATQF------FTYVRRSVKRNGGLP 632 (648)
Q Consensus 576 ~~~~~r~~~~~~~~a~ery~~~~~~~p~----~~~~~~~~~iAs~~------~~~~~~~~~~~~~~~ 632 (648)
....++.......++++|+..++...++ ...++++..||+.+ .+.+++-.++.|...
T Consensus 134 ~~~~~~~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 200 (220)
T 3dv8_A 134 SDVMWLIEQIMWKSLDKRVASFLLEETSIEGTNELKITHETIANHLGSHREVITRMLRYFQVEGLVK 200 (220)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 7788888888899999999988877664 34578999999998 355566666666543
No 9
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.78 E-value=2.7e-18 Score=160.15 Aligned_cols=134 Identities=19% Similarity=0.333 Sum_probs=112.5
Q ss_pred HHHHHhcccccchhhhHHHHHHHHhcCCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEe
Q 006374 397 VENLLNNLPVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTT 476 (648)
Q Consensus 397 e~~ll~~Lp~~Lr~~i~~~~~~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~ 476 (648)
.+++++.||+.||.++..+++.++++++++|.++++++++.++..++.+.|++|++|+++|++++++|||.+|.|+++..
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~ 84 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQD 84 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEEC
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999872
Q ss_pred cCCeeeeEEEEecCCCCeEechhhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhch
Q 006374 477 NGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 543 (648)
Q Consensus 477 ~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P 543 (648)
+. .+..+++|++||+.+++ .+ ...++.++++|.++|+++.|++++|.++++++|
T Consensus 85 --~~----~~~~~~~G~~fG~~~~~---~~----~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p 138 (160)
T 4f8a_A 85 --DE----VVAILGKGDVFGDVFWK---EA----TLAQSCANVRALTYCDLHVIKRDALQKVLEFYT 138 (160)
T ss_dssp --TE----EEEEEETTCEEECCTTT---CS----SCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCH
T ss_pred --CE----EEEEecCCCEeCcHHHh---cC----cccceEEEEEECCceEEEEEcHHHHHHHHHHHH
Confidence 22 26899999999999874 21 002478899999999999999999999999994
No 10
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.78 E-value=2.5e-18 Score=171.62 Aligned_cols=187 Identities=10% Similarity=0.044 Sum_probs=151.5
Q ss_pred HHHHHHhcCCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEe-cCCeeeeEEEEecCCCC
Q 006374 415 ELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTT-NGGRNTSVFKKYLSTGD 493 (648)
Q Consensus 415 ~~~~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~-~~~~~~~~~~~~l~~G~ 493 (648)
....++|+++++|.++++++++.++..++.+.|++|++|+++|++++++|||.+|.|+++.. .+|++.+ +..+++|+
T Consensus 7 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~ 84 (237)
T 3fx3_A 7 EAQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAV--VSVFTRGE 84 (237)
T ss_dssp HHHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTE
T ss_pred HHHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEE--EEEeCCCC
Confidence 34567899999999999999999999999999999999999999999999999999999984 4555544 79999999
Q ss_pred eEechhhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhchhhhhhhhhhHHHHhhhchhhhhhHHhHHHH
Q 006374 494 FWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQA 573 (648)
Q Consensus 494 ~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~ 573 (648)
+||+.+++ .+. ++.++++|.++|+++.|++++|.++++++ |.+.......+..
T Consensus 85 ~~G~~~~~---~~~------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~~ 137 (237)
T 3fx3_A 85 SFGEAVAL---RNT------PYPVSAEAVTPCEVMHIPSPVFVSLMRRD------------------PEICISILATTFG 137 (237)
T ss_dssp EECHHHHH---HTC------CCSSEEEESSSEEEEEEEHHHHHHHHHHC------------------HHHHHHHHHHHHH
T ss_pred EechHHHh---cCC------CCCceEEECCceEEEEEcHHHHHHHHHHC------------------HHHHHHHHHHHHH
Confidence 99999875 222 37889999999999999999999999999 5555544555556
Q ss_pred HHHHHHhhhhhhhHHHHHhhhhhhhhhc-----CCCCCcch--hHHHHHHHH------HHHHHHhhhcCC
Q 006374 574 AWCRYKKRKLEGSLYAKENILQDQKAEA-----GGKPSKFG--TAIYATQFF------TYVRRSVKRNGG 630 (648)
Q Consensus 574 ~~~~~~~r~~~~~~~~a~ery~~~~~~~-----p~~~~~~~--~~~iAs~~~------~~~~~~~~~~~~ 630 (648)
.+....++.......++++|+..++... |+...++| +.+||+.+. +.+++..++.|.
T Consensus 138 ~l~~~~~~~~~l~~~~~~~Rl~~~L~~~~~~~~~~~~~~l~~t~~~iA~~lg~sr~tvsR~l~~L~~~gi 207 (237)
T 3fx3_A 138 HLHSLVAQLEQLKAQTGAQRVAEFLLELCDCDTGACEVTLPYDKMLIAGRLGMKPESLSRAFSRLKAAGV 207 (237)
T ss_dssp HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC-----EEECCSCTHHHHHHTTCCHHHHHHHHHHHGGGTE
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHCCe
Confidence 6777888888899999999999888765 34445566 789999873 334444455554
No 11
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.77 E-value=7.1e-18 Score=167.60 Aligned_cols=183 Identities=14% Similarity=0.163 Sum_probs=144.1
Q ss_pred HHHhcCCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEec-CCeeeeEEEEecCCCCeEe
Q 006374 418 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWG 496 (648)
Q Consensus 418 ~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fG 496 (648)
.++|+++++|.++++++++.++..++.+.|++|++|+++|++++++|||.+|.|+++..+ +|++.+ +..+++|++||
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G 82 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERV--LGDIYAPGVVG 82 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEE--EEEEESSEEES
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEE--EEecCCCCEEe
Confidence 367899999999999999999999999999999999999999999999999999999753 455544 79999999999
Q ss_pred chhhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhchhhhhhhhhhHHHHhhhchhhhhhHHhHHHHHHH
Q 006374 497 EELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWC 576 (648)
Q Consensus 497 e~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~ 576 (648)
+.+++ .+ .++.++++|+++|+++.|++++|.++++++ |.+.......+...+.
T Consensus 83 ~~~~~---~~------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~~~l~ 135 (231)
T 3e97_A 83 ETAVL---AH------QERSASVRALTPVRTLMLHREHFELILRRH------------------PRVLWNLAEMLARRVT 135 (231)
T ss_dssp TTTTT---CC------CCCCEEEEESSCEEEEEECHHHHHHHHHHC------------------HHHHHHHHHHHHHHHH
T ss_pred eHHHh---CC------CCceEEEEECCcEEEEEEeHHHHHHHHHHC------------------HHHHHHHHHHHHHHHH
Confidence 99864 22 237899999999999999999999999999 3333333333334444
Q ss_pred HHHhhhhhhhHHHHH-hhhhhhhhhcC----------CCCCcchhHHHHHHH------HHHHHHHhhhcCCC
Q 006374 577 RYKKRKLEGSLYAKE-NILQDQKAEAG----------GKPSKFGTAIYATQF------FTYVRRSVKRNGGL 631 (648)
Q Consensus 577 ~~~~r~~~~~~~~a~-ery~~~~~~~p----------~~~~~~~~~~iAs~~------~~~~~~~~~~~~~~ 631 (648)
...++.. ...+++ +|+..++.+.+ .+..++++.+||+.+ .+.+++..++.|..
T Consensus 136 ~~~~~~~--~~~~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I 205 (231)
T 3e97_A 136 FLNDELI--AFGQNTEAALTHVFANLYRQRLAAGVPQPEVLPLGTQDIMARTSSSRETVSRVLKRLEAHNIL 205 (231)
T ss_dssp HHHHHHH--HHHHCHHHHHHHHHHHHHHHHHHHTCSSTTEECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHH--HhccChHHHHHHHHHHHHHhcCCCCCCceEecCCCHHHHHHHhCCcHHHHHHHHHHHHHCCcE
Confidence 5555555 556777 89888776655 466789999999988 34455555666643
No 12
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.77 E-value=3.1e-18 Score=169.73 Aligned_cols=185 Identities=18% Similarity=0.227 Sum_probs=151.2
Q ss_pred HHHhcCCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEec-CCeeeeEEEEecCCCCeEe
Q 006374 418 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWG 496 (648)
Q Consensus 418 ~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fG 496 (648)
.++++++++|.++++++++.++..++.+.|++|++|+++||+++++|||.+|.|+++..+ +|++.+ +..+++|++||
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G 82 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENL--LTIMGPSDMFG 82 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEES
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEE--EEEecCCCEEe
Confidence 457899999999999999999999999999999999999999999999999999999854 455544 79999999999
Q ss_pred chhhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhchhhhhhhhhhHHHHhhhchhhhhhHHhHHHHHHH
Q 006374 497 EELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWC 576 (648)
Q Consensus 497 e~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~ 576 (648)
+.+++ .+. ++.++++|.++|+++.|++++|.++++++ |.+.......+...+.
T Consensus 83 ~~~~~---~~~------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~~~l~ 135 (227)
T 3d0s_A 83 ELSIF---DPG------PRTSSATTITEVRAVSMDRDALRSWIADR------------------PEISEQLLRVLARRLR 135 (227)
T ss_dssp CHHHH---SCS------CCSSEEEESSCEEEEEEEHHHHHHTTSSC------------------HHHHHHHHHHHHHHHH
T ss_pred eHHHc---CCC------CceeEEEEcccEEEEEEeHHHHHHHHHHC------------------hHHHHHHHHHHHHHHH
Confidence 99874 222 37889999999999999999999999999 4555555555666677
Q ss_pred HHHhhhhhhhHHHHHhhhhhhhhh-----------cCCCCCcchhHHHHHHHH------HHHHHHhhhcCCC
Q 006374 577 RYKKRKLEGSLYAKENILQDQKAE-----------AGGKPSKFGTAIYATQFF------TYVRRSVKRNGGL 631 (648)
Q Consensus 577 ~~~~r~~~~~~~~a~ery~~~~~~-----------~p~~~~~~~~~~iAs~~~------~~~~~~~~~~~~~ 631 (648)
...++.......++++|+..++.. .+.+..++++..||+.+. +.+++..++.|..
T Consensus 136 ~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I 207 (227)
T 3d0s_A 136 RTNNNLADLIFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVGASRETVNKALADFAHRGWI 207 (227)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHEEEETTEEEEECCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCcCCCceEEcCCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCE
Confidence 778888888889999999877654 233567899999998764 3344455556643
No 13
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.76 E-value=5.6e-18 Score=167.66 Aligned_cols=186 Identities=10% Similarity=0.109 Sum_probs=150.1
Q ss_pred HHHhcCCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEec-CCeeeeEEEEecCCCCeEe
Q 006374 418 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWG 496 (648)
Q Consensus 418 ~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fG 496 (648)
.++++++++|.++++++++.++..++.+.|++|++|+++|++++++|||.+|.|+++..+ +|++.+ +..+++|++||
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G 85 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKI--LEVTNERNTFA 85 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBC--CCEECTTEEES
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEee
Confidence 468899999999999999999999999999999999999999999999999999998743 455544 78999999999
Q ss_pred chhhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhchhhhhhhhhhHHHHhhhchhhhhhHHhHHHHHHH
Q 006374 497 EELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWC 576 (648)
Q Consensus 497 e~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~ 576 (648)
+.+++ .+ .|.+.++++|.++|+++.|++++|.++++++ |.+.......+...+.
T Consensus 86 ~~~~~---~~-----~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~~~l~ 139 (227)
T 3dkw_A 86 EAMMF---MD-----TPNYVATAQAVVPSQLFRFSNKAYLRQLQDN------------------TPLALALLAKLSTRLH 139 (227)
T ss_dssp CTTTT---TT-----CSBCSSCEEESSCCEEEEEESHHHHHHHSSC------------------THHHHHHHHHHHHHHH
T ss_pred eHHhc---CC-----CCCCceEEEEcCcEEEEEEeHHHHHHHHHHC------------------HHHHHHHHHHHHHHHH
Confidence 98863 21 1226789999999999999999999999999 4444444445555566
Q ss_pred HHHhhhhhhhHHHHHhhhhhhh-hhcCC-------CCCcchhHHHHHHHH------HHHHHHhhhcCCC
Q 006374 577 RYKKRKLEGSLYAKENILQDQK-AEAGG-------KPSKFGTAIYATQFF------TYVRRSVKRNGGL 631 (648)
Q Consensus 577 ~~~~r~~~~~~~~a~ery~~~~-~~~p~-------~~~~~~~~~iAs~~~------~~~~~~~~~~~~~ 631 (648)
...++.......++++|+..++ ...+. +..++++..||+.+. +.++.-.++.|..
T Consensus 140 ~~~~~~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I 208 (227)
T 3dkw_A 140 QRIDEIETLSLKNATHRVVRYLLTLAAHAPGENCRVEIPVAKQLVAGHLSIQPETFSRIMHRLGDEGII 208 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSSCCCCCCCSCTHHHHHHTTSCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcCCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHCCcE
Confidence 6777888888899999998765 33443 677899999999883 3445555666653
No 14
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.76 E-value=7.8e-18 Score=167.75 Aligned_cols=188 Identities=13% Similarity=0.128 Sum_probs=154.6
Q ss_pred HHHHhcCCcccccCCHHHHHHHHhc--CeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEe-cCCeeeeEEEEecCCCC
Q 006374 417 CLEVLKKVPMFQMMGKSILSEMCKC--LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTT-NGGRNTSVFKKYLSTGD 493 (648)
Q Consensus 417 ~~~~L~~i~~F~~ls~~~l~~L~~~--l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~-~~~~~~~~~~~~l~~G~ 493 (648)
..+.++++++|.++++++++.++.. ++.+.|++|++|+++||+++++|||.+|.|+++.. .+|++.+ +..+++|+
T Consensus 16 ~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--l~~~~~G~ 93 (232)
T 1zyb_A 16 MFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTV--IEQIEAPY 93 (232)
T ss_dssp HHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEE--EEEEESSE
T ss_pred HHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEE--EEEccCCC
Confidence 4567889999999999999999998 99999999999999999999999999999999874 3455544 79999999
Q ss_pred eEechhhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhchhhhhhhhhhHHHHhhhchhhhhhHHhHHHH
Q 006374 494 FWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQA 573 (648)
Q Consensus 494 ~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~ 573 (648)
+||+.+++ .+ .+++.++++|+++|+++.|++++|.++++++ |.+.......+..
T Consensus 94 ~fG~~~~~---~~-----~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~l~~~l~~ 147 (232)
T 1zyb_A 94 LIEPQSLF---GM-----NTNYASSYVAHTEVHTVCISKAFVLSDLFRY------------------DIFRLNYMNIVSN 147 (232)
T ss_dssp EECGGGGS---SS-----CCBCSSEEEESSCEEEEEEEHHHHHHTGGGS------------------HHHHHHHHHHHHH
T ss_pred eeeehHHh---CC-----CCCCceEEEEccceEEEEEEHHHHHHHhccC------------------HHHHHHHHHHHHH
Confidence 99999874 21 1227889999999999999999999999999 5555555566666
Q ss_pred HHHHHHhhhhhhhHHHHHhhhhhhhhhc---C--CCCCcchhHHHHHHHH------HHHHHHhhhcCCCC
Q 006374 574 AWCRYKKRKLEGSLYAKENILQDQKAEA---G--GKPSKFGTAIYATQFF------TYVRRSVKRNGGLP 632 (648)
Q Consensus 574 ~~~~~~~r~~~~~~~~a~ery~~~~~~~---p--~~~~~~~~~~iAs~~~------~~~~~~~~~~~~~~ 632 (648)
.+....++.......++++|+..++... | .+..++++..||+.+. +.+++..++.|...
T Consensus 148 ~l~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~ 217 (232)
T 1zyb_A 148 RAQNLYSRLWDEPTLDLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTRLNISKTLNELQDNGLIE 217 (232)
T ss_dssp HHHHHHHHTTSCCCCSHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCE
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhcCCeEEecCCHHHHHHHhCCChhHHHHHHHHHHHCCCEE
Confidence 7778888999999999999999887653 3 3556899999999775 34455556666543
No 15
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.75 E-value=1.4e-17 Score=165.45 Aligned_cols=180 Identities=13% Similarity=0.136 Sum_probs=146.7
Q ss_pred CCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEec-CCeeeeEEEEecCCCCeEechhhh
Q 006374 423 KVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELAT 501 (648)
Q Consensus 423 ~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fGe~~l~ 501 (648)
.+|+|.++++++++.++..++.+.|+||++|+++||+++++|||.+|.|+++..+ +|++.+ +..+++|++||+.+++
T Consensus 14 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G~~~~~ 91 (232)
T 2gau_A 14 LRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHI--SRIVKPGQFFGMRPYF 91 (232)
T ss_dssp SHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCE--EEEECTTCEESHHHHH
T ss_pred ccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEeCCCCEeeeehhh
Confidence 5688999999999999999999999999999999999999999999999998743 345544 7999999999999875
Q ss_pred ccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhchhhhhhhhhhHHHHhhhchhhhhhHHhHHHHHHHHHHhh
Q 006374 502 SALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKR 581 (648)
Q Consensus 502 ~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~~~r 581 (648)
.+. ++.++++|.++|+++.|++++|.++++++ |.+.......+...+....++
T Consensus 92 ---~~~------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~~~l~~~~~~ 144 (232)
T 2gau_A 92 ---AEE------TCSSTAIAVENSKVLAIPVEAIEALLKGN------------------TSFCRYFLKALAKELGYAERR 144 (232)
T ss_dssp ---HTS------CCSSEEEESSCEEEEEEEHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCC------CcceEEEEecceEEEEEEHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 222 37889999999999999999999999999 566666666677777788888
Q ss_pred hhhhhHHHHHhhhhhhhh----hc------CCCCCcchhHHHHHHHH------HHHHHHhhhcCCC
Q 006374 582 KLEGSLYAKENILQDQKA----EA------GGKPSKFGTAIYATQFF------TYVRRSVKRNGGL 631 (648)
Q Consensus 582 ~~~~~~~~a~ery~~~~~----~~------p~~~~~~~~~~iAs~~~------~~~~~~~~~~~~~ 631 (648)
...+...++++|+..++. .+ |.+..++++..||+.+. +.+++..++.|..
T Consensus 145 ~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I 210 (232)
T 2gau_A 145 TVTLTQKHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAIRTLSTFVSERML 210 (232)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSE
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHhCCCHHHHHHHHHHHHHCCCE
Confidence 888889999999988773 22 45677899999998774 3344445555553
No 16
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.74 E-value=9.9e-18 Score=165.32 Aligned_cols=177 Identities=11% Similarity=0.099 Sum_probs=150.5
Q ss_pred HHhcCCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEech
Q 006374 419 EVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEE 498 (648)
Q Consensus 419 ~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~ 498 (648)
.+|+++++|.++++++++.++..++.+.|++|++|+++||+++++|||.+|.|+++...+|++.+ +..+++|++||+
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~--~~~~~~G~~~G~- 80 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFT--LAILEAGDIFCT- 80 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEE--EEEEETTCEEES-
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEE--EEEcCCCCEeCC-
Confidence 46788999999999999999999999999999999999999999999999999997655666654 799999999998
Q ss_pred hhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhchhhhhhhhhhHHHHhhhchhhhhhHHhHHHHHHHHH
Q 006374 499 LATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRY 578 (648)
Q Consensus 499 ~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~ 578 (648)
. +.++++|+++|+++.|++++|.++++++ |.+.......+...+...
T Consensus 81 ~---------------~~~~~~A~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~~~~~~~~~ 127 (220)
T 2fmy_A 81 H---------------TRAFIQAMEDTTILYTDIRNFQNIVVEF------------------PAFSLNMVKVLGDLLKNS 127 (220)
T ss_dssp C---------------SSSEEEESSSEEEEEEEHHHHHHHHHHC------------------THHHHHHHHHHHHHHHHH
T ss_pred c---------------cceEEEEcCcEEEEEEeHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHH
Confidence 1 5689999999999999999999999999 566666666777777888
Q ss_pred HhhhhhhhHHHHHhhhhhhhhhcCC-----------CCCcchhHHHHHHHH------HHHHHHhhhcCCC
Q 006374 579 KKRKLEGSLYAKENILQDQKAEAGG-----------KPSKFGTAIYATQFF------TYVRRSVKRNGGL 631 (648)
Q Consensus 579 ~~r~~~~~~~~a~ery~~~~~~~p~-----------~~~~~~~~~iAs~~~------~~~~~~~~~~~~~ 631 (648)
.++.......++++|+..++.+.++ +...+++..||+.+. +.+++..++.|..
T Consensus 128 ~~~~~~l~~~~~~~Rl~~~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I 197 (220)
T 2fmy_A 128 LTIINGLVFKDARLRLAEFLVQAAMDTGLKVPQGIKLELGLNTEEIALMLGTTRQTVSVLLNDFKKMGIL 197 (220)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHCEEETTEEEEECSSCHHHHHHHHTSCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHHCCCE
Confidence 8999999999999999988776543 557899999999875 3445555666654
No 17
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.73 E-value=1.9e-16 Score=152.41 Aligned_cols=136 Identities=15% Similarity=0.205 Sum_probs=118.3
Q ss_pred HHHHHhcccccc----hhhhHHHHHHHHhcCCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEE
Q 006374 397 VENLLNNLPVNL----NWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLL 472 (648)
Q Consensus 397 e~~ll~~Lp~~L----r~~i~~~~~~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~ 472 (648)
+..+.+.++|++ +.+.......++++++++|.+++++++..++..++.+.|++|++|+++|++++.+|+|.+|.|+
T Consensus 13 ~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~ 92 (187)
T 3gyd_A 13 ENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVN 92 (187)
T ss_dssp HHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEE
T ss_pred cceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEE
Confidence 556666676654 4667777788999999999999999999999999999999999999999999999999999999
Q ss_pred EEEec-CCeeeeEEEEecCCCCeEechhhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhch
Q 006374 473 TTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 543 (648)
Q Consensus 473 v~~~~-~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P 543 (648)
++..+ +|++.+ +..+++|++||+.+++ .+. ++.++++|.++|+++.|++++|.++++++|
T Consensus 93 v~~~~~~g~~~~--~~~~~~G~~fGe~~~l---~~~------~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p 153 (187)
T 3gyd_A 93 VIKDIPNKGIQT--IAKVGAGAIIGEMSMI---DGM------PRSASCVASLPTDFAVLSRDALYQLLANMP 153 (187)
T ss_dssp EEEEETTTEEEE--EEEEETTCEESHHHHH---HCC------CCSSEEEEEEEEEEEEEEHHHHHHHHHHCH
T ss_pred EEEECCCCCeEE--EEEccCCCeeeeHHHh---CCC------CeeEEEEECCCeEEEEEcHHHHHHHHHHCh
Confidence 99753 565544 7899999999999874 222 378899999999999999999999999993
No 18
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.73 E-value=8.4e-17 Score=159.47 Aligned_cols=190 Identities=11% Similarity=0.135 Sum_probs=136.3
Q ss_pred HHHhcCCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEe-cCCeeeeEEEEecCCCCeEe
Q 006374 418 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTT-NGGRNTSVFKKYLSTGDFWG 496 (648)
Q Consensus 418 ~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~-~~~~~~~~~~~~l~~G~~fG 496 (648)
...+++.++|.++++++++.++..++.+.|+||++|+++||+++++|||.+|.|+++.. .+|++.+ +..+++|++||
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G 87 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELV--LGYFGSGEFVG 87 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEES
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEEE
Confidence 45788899999999999999999999999999999999999999999999999999974 3555544 79999999999
Q ss_pred chhhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhchhhhhhhhhhHHHHhhhchhhhhhHHhHHHHHHH
Q 006374 497 EELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWC 576 (648)
Q Consensus 497 e~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~ 576 (648)
+.+++ . +.+++.++++|.++|+++.|++++|.+++++++ +..+ |.+.......+...+.
T Consensus 88 ~~~~~---~-----~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~-~~~~------------p~~~~~~~~~l~~~l~ 146 (230)
T 3iwz_A 88 EMGLF---I-----ESDTREVILRTRTQCELAEISYERLQQLFQTSL-SPDA------------PRILYAIGVQLSKRLL 146 (230)
T ss_dssp CGGGT---S-----CCSBCCSEEEESSCEEEEEEEHHHHHHHHHTTT-GGGH------------HHHHHHHHHHHHHHHH
T ss_pred ehhhh---c-----CCCCceeEEEEcCcEEEEEEeHHHHHHHHHHhc-ccCC------------cHHHHHHHHHHHHHHH
Confidence 99874 2 112377899999999999999999999999981 0000 1222222233444456
Q ss_pred HHHhhhhhhhHHHHHhhhhhhhhhcC----------CCCCcchhHHHHHHHH------HHHHHHhhhcCC
Q 006374 577 RYKKRKLEGSLYAKENILQDQKAEAG----------GKPSKFGTAIYATQFF------TYVRRSVKRNGG 630 (648)
Q Consensus 577 ~~~~r~~~~~~~~a~ery~~~~~~~p----------~~~~~~~~~~iAs~~~------~~~~~~~~~~~~ 630 (648)
...++.......++++|+..++.... ++..++++.+||+.+. +.+++..++.|.
T Consensus 147 ~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~~lA~~lg~sr~tvsR~l~~L~~~g~ 216 (230)
T 3iwz_A 147 DTTRKASRLAFLDVTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELARLVGCSREMAGRVLKKLQADGL 216 (230)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCceecCCCHHHHHHHhCCcHHHHHHHHHHHHHCCC
Confidence 77788888888999999988766532 2345688999999875 334445555554
No 19
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.72 E-value=3.5e-17 Score=161.69 Aligned_cols=176 Identities=10% Similarity=0.098 Sum_probs=148.4
Q ss_pred HhcCCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEechh
Q 006374 420 VLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEEL 499 (648)
Q Consensus 420 ~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~ 499 (648)
+|+++++|.++++++++.++..++.+.|++|++|+++|++++++|||.+|.|+++...+|++.+ +..+++|++|| .
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~--~~~~~~G~~fG--~ 76 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREIS--LFYLTSGDMFC--M 76 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEE--EEEEETTCEEE--S
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEE--EEEcCCCCEec--C
Confidence 3678999999999999999999999999999999999999999999999999997555666654 79999999999 1
Q ss_pred hhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhchhhhhhhhhhHHHHhhhchhhhhhHHhHHHHHHHHHH
Q 006374 500 ATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYK 579 (648)
Q Consensus 500 l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~~ 579 (648)
++.++++|+++|+++.|++++|.++++++ |.+.......+...+....
T Consensus 77 --------------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~~~l~~~~ 124 (222)
T 1ft9_A 77 --------------HSGCLVEATERTEVRFADIRTFEQKLQTC------------------PSMAWGLIAILGRALTSCM 124 (222)
T ss_dssp --------------CSSCEEEESSCEEEEEECHHHHHHHHHHC------------------GGGHHHHHHHHHHHHHHHH
T ss_pred --------------CCCEEEEEccceEEEEEeHHHHHHHHHHC------------------hHHHHHHHHHHHHHHHHHH
Confidence 26789999999999999999999999999 5555555666677777888
Q ss_pred hhhhhhhHHHHHhhhhhhhhhcC-----------CCCCcchhHHHHHHHH------HHHHHHhhhcCCC
Q 006374 580 KRKLEGSLYAKENILQDQKAEAG-----------GKPSKFGTAIYATQFF------TYVRRSVKRNGGL 631 (648)
Q Consensus 580 ~r~~~~~~~~a~ery~~~~~~~p-----------~~~~~~~~~~iAs~~~------~~~~~~~~~~~~~ 631 (648)
++...+...++++|+..++...+ .+..++++..||+.+. +.+++..++.|..
T Consensus 125 ~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I 193 (222)
T 1ft9_A 125 RTIEDLMFHDIKQRIAGFFIDHANTTGRQTQGGVIVSVDFTVEEIANLIGSSRQTTSTALNSLIKEGYI 193 (222)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHTCBCCCSCC--CCCCEECCCHHHHHHHHCSCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHHCCcE
Confidence 89999999999999999887766 2456789999998774 3455555666654
No 20
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.71 E-value=1.9e-16 Score=154.17 Aligned_cols=176 Identities=16% Similarity=0.171 Sum_probs=135.9
Q ss_pred CCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEec-CCeeeeEEEEecCCCCeEechhhhccCCCCC
Q 006374 430 MGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDPDP 508 (648)
Q Consensus 430 ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~ 508 (648)
+|+++++.++..++.+.|+||++|+++||+++++|||.+|.|+++..+ +|++.+ +..+++|++||+.+++ .+..
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G~~~~~---~~~~ 75 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMI--IGYLNSGDFFGELGLF---EKEG 75 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEESCTTTC---C---
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCCcccHHHh---cCCC
Confidence 589999999999999999999999999999999999999999999743 455544 7999999999998864 2110
Q ss_pred CCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhchhhhhhhhhhHHHHhhhchhhhhhHHhHHHHHHHHHHhhhhhhhHH
Q 006374 509 LSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLY 588 (648)
Q Consensus 509 ~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~~~r~~~~~~~ 588 (648)
..+++.++++|+++|+++.|++++|.++++++ |.+.......+...+....++.......
T Consensus 76 --~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~~~~~~~~~~~~~l~~~ 135 (207)
T 2oz6_A 76 --SEQERSAWVRAKVECEVAEISYAKFRELSQQD------------------SEILYTLGSQMADRLRKTTRKVGDLAFL 135 (207)
T ss_dssp ----CBCCSEEEESSCEEEEEEEHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred --CCCCcceEEEECCcEEEEEECHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 00037889999999999999999999999999 4444433344445556677788888888
Q ss_pred HHHhhhhhhhh---hcCC-------CCCcchhHHHHHHHH------HHHHHHhhhcCC
Q 006374 589 AKENILQDQKA---EAGG-------KPSKFGTAIYATQFF------TYVRRSVKRNGG 630 (648)
Q Consensus 589 ~a~ery~~~~~---~~p~-------~~~~~~~~~iAs~~~------~~~~~~~~~~~~ 630 (648)
++++|+..++. +.|+ +..++++..||+.+. +.+++..++.|.
T Consensus 136 ~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~ 193 (207)
T 2oz6_A 136 DVTGRVARTLLDLCQQPDAMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLEEQGL 193 (207)
T ss_dssp CHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHHhcCCCCCCCceecccCHHHHHHHhCCCHHHHHHHHHHHHHCCC
Confidence 99999987753 3322 456799999998764 334444555554
No 21
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.71 E-value=2.5e-16 Score=153.75 Aligned_cols=177 Identities=10% Similarity=0.095 Sum_probs=138.2
Q ss_pred ccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEe-cCCeeeeEEEEecCCCCeEechhhhccC
Q 006374 426 MFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTT-NGGRNTSVFKKYLSTGDFWGEELATSAL 504 (648)
Q Consensus 426 ~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~-~~~~~~~~~~~~l~~G~~fGe~~l~~~l 504 (648)
+++.+++++++.++..++.+.|++|++|+++|++++++|||.+|.|+++.. .+|++.+ +..+++|++||+.+++
T Consensus 3 l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G~~~~~--- 77 (210)
T 3ryp_A 3 LGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLF--- 77 (210)
T ss_dssp ----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEE--EEEEETTCEESCTTTT---
T ss_pred CCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEeeeHHHh---
Confidence 556799999999999999999999999999999999999999999999975 4555544 7999999999999864
Q ss_pred CCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhchhhhhhhhhhHHHHhhhchhhhhhHHhHHHHHHHHHHhhhhh
Q 006374 505 DPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLE 584 (648)
Q Consensus 505 ~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~~~r~~~ 584 (648)
. +.+++.++++|.++|+++.|++++|.++++++ |.+.......+...+....++...
T Consensus 78 ~-----~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~~~l~~~~~~~~~ 134 (210)
T 3ryp_A 78 E-----EGQERSAWVRAKTACEVAEISYKKFRQLIQVN------------------PDILMRLSAQMARRLQVTSEKVGN 134 (210)
T ss_dssp S-----TTCBCSSEEEESSCEEEEEEEHHHHHHHHHHC------------------THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-----CCCCceEEEEECCcEEEEEEcHHHHHHHHHHC------------------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 12247889999999999999999999999999 455554445555566777788888
Q ss_pred hhHHHHHhhhhhhhhhcC---------C-CCCcchhHHHHHHHH------HHHHHHhhhcCC
Q 006374 585 GSLYAKENILQDQKAEAG---------G-KPSKFGTAIYATQFF------TYVRRSVKRNGG 630 (648)
Q Consensus 585 ~~~~~a~ery~~~~~~~p---------~-~~~~~~~~~iAs~~~------~~~~~~~~~~~~ 630 (648)
....++++|+..++.... + +..++++.+||+.+. +.+++..++.|.
T Consensus 135 ~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~ 196 (210)
T 3ryp_A 135 LAFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNL 196 (210)
T ss_dssp HHHSCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HhhCCHHHHHHHHHHHHHHhcCcCCCCCceEeccCHHHHHHHhCCcHHHHHHHHHHHHHCCc
Confidence 888899999987765422 1 334789999999774 334444455554
No 22
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.71 E-value=8.7e-17 Score=146.57 Aligned_cols=126 Identities=21% Similarity=0.349 Sum_probs=113.6
Q ss_pred cccccchhhhHHHHHHHHhcCCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeee
Q 006374 403 NLPVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNT 482 (648)
Q Consensus 403 ~Lp~~Lr~~i~~~~~~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~ 482 (648)
++|..+|.+...+...++++++++|.+++++.++.++..++.+.|++|++|+++|+.++++|||.+|.|++.. + |+
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-~-g~-- 82 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK-E-GV-- 82 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE-T-TE--
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE-C-CE--
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999965 3 33
Q ss_pred eEEEEecCCCCeEechhhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhch
Q 006374 483 SVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 543 (648)
Q Consensus 483 ~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P 543 (648)
.+..+++|++||+.+++. +. ++.++++|.++|+++.|++++|.++++++|
T Consensus 83 --~~~~~~~G~~fGe~~~l~---~~------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p 132 (139)
T 3ocp_A 83 --KLCTMGPGKVFGELAILY---NC------TRTATVKTLVNVKLWAIDRQCFQTIMMRTG 132 (139)
T ss_dssp --EEEEECTTCEESCHHHHH---CC------CCSSEEEESSCEEEEEEEHHHHHHHHTC--
T ss_pred --EEEEeCCCCEeccHHHHC---CC------CcceEEEECcceEEEEEcHHHHHHHHhhCh
Confidence 268999999999998752 22 378899999999999999999999999995
No 23
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.70 E-value=8.3e-17 Score=147.85 Aligned_cols=141 Identities=18% Similarity=0.272 Sum_probs=114.7
Q ss_pred HHHhcCCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEec-CCeeeeEEEEecCCCCeEe
Q 006374 418 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWG 496 (648)
Q Consensus 418 ~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fG 496 (648)
.++++++++|.++++++++.++..++.+.|++|++|+++|++++++|||.+|.|+++..+ +|++.+ +..+++|++||
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G 81 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENM--LAVVGPSELIG 81 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEE--EEEECTTCEES
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEE--EEEcCCcCEec
Confidence 357889999999999999999999999999999999999999999999999999998754 455544 79999999999
Q ss_pred chhhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhchhhhhhhhhhHHHHhhhchhhhhhHHhHHHHHHH
Q 006374 497 EELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWC 576 (648)
Q Consensus 497 e~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~ 576 (648)
+.+++ .+. ++.++++|.++|+++.|++++|.++++++ |.+.......+.+.+.
T Consensus 82 ~~~~~---~~~------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~------------------p~~~~~~~~~~~~~l~ 134 (149)
T 2pqq_A 82 ELSLF---DPG------PRTATGTALTEVKLLALGHGDLQPWLNVR------------------PEVATALLRAVARRLR 134 (149)
T ss_dssp GGGGT---SCE------ECSSEEEESSCEEEEEEEGGGHHHHHHHC------------------THHHHHHHHHHHHHHH
T ss_pred hHHhc---CCC------CcceEEEEccceEEEEEeHHHHHHHHHhC------------------cHHHHHHHHHHHHHHH
Confidence 98874 222 37889999999999999999999999999 4444444445555555
Q ss_pred HHHhhhhhhhH
Q 006374 577 RYKKRKLEGSL 587 (648)
Q Consensus 577 ~~~~r~~~~~~ 587 (648)
...+|+.++..
T Consensus 135 ~~~~~~~~l~~ 145 (149)
T 2pqq_A 135 KTNDAMSDLVF 145 (149)
T ss_dssp HHHTTC--CCC
T ss_pred HHHHHHHHHhc
Confidence 55555554433
No 24
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.70 E-value=2.2e-16 Score=147.83 Aligned_cols=128 Identities=12% Similarity=0.148 Sum_probs=113.3
Q ss_pred cccchhhhHHHHHHHHhcCCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeE
Q 006374 405 PVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSV 484 (648)
Q Consensus 405 p~~Lr~~i~~~~~~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~ 484 (648)
+..-+.+.......++|+++++|.+++++.+..++..++.+.|++|++|+++|++++++|||.+|.|+++...+|++..
T Consensus 24 ~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~- 102 (161)
T 3idb_B 24 IIHPKTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC- 102 (161)
T ss_dssp CCCCCCHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEEE-
T ss_pred ccCCCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeEE-
Confidence 3344566667777899999999999999999999999999999999999999999999999999999999866666654
Q ss_pred EEEecCCCCeEechhhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhch
Q 006374 485 FKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 543 (648)
Q Consensus 485 ~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P 543 (648)
+..+++|++||+.+++ .+. ++.++++|.++|+++.|++++|.++++++|
T Consensus 103 -~~~~~~G~~fGe~~~~---~~~------~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p 151 (161)
T 3idb_B 103 -VGNYDNRGSFGELALM---YNT------PRAATITATSPGALWGLDRVTFRRIIVKNN 151 (161)
T ss_dssp -EEEEESCCEECGGGGT---CCC------CCSSEEEESSSEEEEEEEHHHHHHHHHHHH
T ss_pred -EEEcCCCCEechHHHH---cCC------CcccEEEECCCeEEEEEeHHHHHHHHHHCH
Confidence 7999999999999874 222 378899999999999999999999999994
No 25
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.69 E-value=7.5e-17 Score=158.40 Aligned_cols=167 Identities=11% Similarity=0.088 Sum_probs=105.4
Q ss_pred CcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEe-cCCeeeeEEEEecCCCCeEechhhhc
Q 006374 424 VPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTT-NGGRNTSVFKKYLSTGDFWGEELATS 502 (648)
Q Consensus 424 i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~-~~~~~~~~~~~~l~~G~~fGe~~l~~ 502 (648)
-|.|++.+++..+.++..++.+.|++|++|+++|++++++|||.+|.|+++.. .+|++.+ +..+++|++||+.+++
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~G~~~G~~~~~- 80 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLE--IDEIKPVQIIASGFIF- 80 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEE--EEEECSSEESSGGGTT-
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEeeeHHHh-
Confidence 36788899999999999999999999999999999999999999999999874 3555544 7999999999999864
Q ss_pred cCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhchhhhhhhhhhHHHHhhhchhhh-hhHHhHHHHHHHHHHhh
Q 006374 503 ALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWR-TSKACVIQAAWCRYKKR 581 (648)
Q Consensus 503 ~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~-~~~~~~~e~~~~~~~~r 581 (648)
.. .+++.++++|+++|+++.|++++|.++++++ |.+. .+.+.+.++ .....++
T Consensus 81 --~~-----~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~l~~~l~~~-~~~~~~~ 134 (213)
T 1o5l_A 81 --SS-----EPRFPVNVVAGENSKILSIPKEVFLDLLMKD------------------RELLLFFLKDVSEH-FRVVSEK 134 (213)
T ss_dssp --SS-----SCBCSSEEEESSSEEEEEEEHHHHHHHHHHC------------------HHHHHHHHHHHHHH-HHHHHHH
T ss_pred --cC-----CCCceEEEEEccceEEEEEeHHHHHHHHHHC------------------HHHHHHHHHHHHHH-HHHHHHH
Confidence 21 1237889999999999999999999999999 4443 344444444 4566788
Q ss_pred hhhhhHHHHHhhhhhhhhhcC----CCCCcchhHHHHHHHHH
Q 006374 582 KLEGSLYAKENILQDQKAEAG----GKPSKFGTAIYATQFFT 619 (648)
Q Consensus 582 ~~~~~~~~a~ery~~~~~~~p----~~~~~~~~~~iAs~~~~ 619 (648)
...+...++++|+..++.+.+ .+..++++..||+.+..
T Consensus 135 ~~~l~~~~~~~Rl~~~L~~~~~~~g~~~~~~t~~~lA~~lg~ 176 (213)
T 1o5l_A 135 LFFLTTKTLREKLMNFLVRHMNEKRELTLPVTLEELSRLFGC 176 (213)
T ss_dssp HHHHHCC-----------------------------------
T ss_pred HHHHhhCCHHHHHHHHHHHHhccCCcccCCCCHHHHHHHhCC
Confidence 888888999999999998888 56778999999988764
No 26
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.69 E-value=1.4e-17 Score=184.48 Aligned_cols=232 Identities=12% Similarity=0.119 Sum_probs=135.1
Q ss_pred Ccee-cCCCcc----hHHHHHHHHHHHHhhcceeEEEEEEcCCcceee-----------------ecccceeehhhhHHH
Q 006374 43 NRIV-DPRGPF----WNWIWLAVRIISTSLDPLFFYIFVVNDHKKCVD-----------------LDIKLAIIAISLRTI 100 (648)
Q Consensus 43 ~~vi-~P~s~~----Wd~~~~~~~l~~~~~~Pl~~~~~~~~~~~~~f~-----------------~~~~~~~~~~i~~~~ 100 (648)
+.++ +|.|+. |+.++++++++++++..+.-. |.+.....-.. ........+.++|.+
T Consensus 169 w~l~e~p~sS~~a~~f~~~~i~~Illsii~~~leT~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~i 247 (514)
T 2r9r_B 169 WLLFEYPESSGPARIIAIVSVMVILISIVSFCLETL-PIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFFIVETL 247 (514)
T ss_dssp HHTTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCCHHHHHHHH
T ss_pred HHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhcc-ccccccccccccccccccccccccccccccchhhhHHHHHHHH
Confidence 3344 587643 888888888888777554311 10000000000 001123457789999
Q ss_pred HHHhhhh---hc---CCccccChhHhhhhhhhhHH--hHHHhhhcCCccchhheeeeccCCCCCc--cchhhHHHHHHHH
Q 006374 101 FDFFNII---YS---SSTPHKHSRANAKKCFYLNS--FLKDLLSCLPIPQLVTSIIIITSKGSGF--FPAMVWLKVVVIV 170 (648)
Q Consensus 101 ~D~~f~~---f~---~~~~v~d~~~Ia~~~~Ylk~--F~iDlls~lP~~~i~~~~~~~~~~~~~~--~~~~~llrl~~l~ 170 (648)
++++|.+ ++ .+ ..+ +|+++ .++|+++++|+.+.... +....+.. .....++|++|++
T Consensus 248 ~~~iFtiE~ilR~~~~~--------~k~--~Y~ks~wniiDli~iip~~i~l~~---~~~~~~~~~~~~~~~~lrvlRll 314 (514)
T 2r9r_B 248 CIIWFSFEFLVRFFACP--------SKA--GFFTNIMNIIDIVAIIPYYVTIFL---TESNKSVLQFQNVRRVVQIFRIM 314 (514)
T ss_dssp HHHHHHHHHHHHHHHSS--------CSS--SSTTSHHHHHHHHTTHHHHHHHHH---HHTSCSHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC--------cHH--HHHhchhHHHHHHHHHHHHHHHHh---hhccccchhhhhHHHHHHHHHHH
Confidence 9999988 22 22 135 99998 89999999998654432 11111110 0112344444433
Q ss_pred HHhHHHHHHHHHHHHHhhccchhhhhchHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhHHHHHhhhccCCccccccccc
Q 006374 171 QYVPRFYRIYRLYAVAESTSGILAQMKWVKSACCILIY-LLAAHVFGALWYFMAIERETECWKKACREHTECYQNSFHCY 249 (648)
Q Consensus 171 ~~l~rl~ri~rl~~~~~~~~~~~~~~~~~~~~~~l~~~-ll~~H~~aC~wy~~~~~~~~~~w~~~c~~~~~c~~~~~~~~ 249 (648)
| +.|++|+.|..+.+......+... . ..+..++++ ++..+++||++|++-.
T Consensus 315 R-vlRilkL~r~~~~l~~l~~tl~~s-~-~~l~~ll~~l~i~~~if~~~~~~~e~------------------------- 366 (514)
T 2r9r_B 315 R-ILRIFKLSRHSKGLQILGQTLKAS-M-RELGLLIFFLFIGVILFSSAVYFAEA------------------------- 366 (514)
T ss_dssp G-GGGGGGGGGSCHHHHHHHHHHHHT-H-HHHHHHHHHHHHHHHHHHHHHHHHHT-------------------------
T ss_pred H-HHHHHHHhhhhhHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHhhhheeec-------------------------
Confidence 2 334444433322222221111111 1 112222222 3456777887775410
Q ss_pred CCCCccccccccCCCCcCCCCccccchhHHHHhhccccccchHHHHHHHHHhhhhccccccccCcccCchhHHHHHHHHH
Q 006374 250 ETVGNYTFLTGLCPTMIQDTTMFNFGMFQEAIQSGMVEEKAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFII 329 (648)
Q Consensus 250 ~~~~~~~W~~~~~~~~~~~~~~~~~g~y~~~l~~~~~~~~~~~~~Yi~slYwa~~TmttvGyGdi~p~~~~E~i~~i~~~ 329 (648)
..+ ++.+..|..|+||+++|||||||||++|.+..++++++++|
T Consensus 367 --~~~----------------------------------~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~ 410 (514)
T 2r9r_B 367 --DER----------------------------------DSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCA 410 (514)
T ss_dssp --TCT----------------------------------TCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHH
T ss_pred --cCC----------------------------------CccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHH
Confidence 000 11234578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc
Q 006374 330 IASLLLLLLVLGNLTIYLQSGTI 352 (648)
Q Consensus 330 i~G~~~fa~iig~i~~ii~~~~~ 352 (648)
++|.+++++.+|.+.+.++....
T Consensus 411 l~G~~~l~l~iavI~~~f~~~~~ 433 (514)
T 2r9r_B 411 IAGVLTIALPVPVIVSNFNYFYH 433 (514)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987766544
No 27
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.67 E-value=5.9e-16 Score=156.98 Aligned_cols=175 Identities=10% Similarity=0.097 Sum_probs=136.4
Q ss_pred ccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEe-cCCeeeeEEEEecCCCCeEechhhhccCCC
Q 006374 428 QMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTT-NGGRNTSVFKKYLSTGDFWGEELATSALDP 506 (648)
Q Consensus 428 ~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~-~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~ 506 (648)
..+++++++.++..++.+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +..+++|++||+.+++ .
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~--~~~~~~G~~~Ge~~~~---~- 128 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLF---E- 128 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEE--EEEEETTCEESCTTTT---S-
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEEeehHHh---C-
Confidence 4689999999999999999999999999999999999999999999975 4555544 7999999999999864 2
Q ss_pred CCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhchhhhhhhhhhHHHHhhhchhhhhhHHhHHHHHHHHHHhhhhhhh
Q 006374 507 DPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGS 586 (648)
Q Consensus 507 ~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~~~r~~~~~ 586 (648)
+.+++.++++|+++|+++.|++++|.++++++ |.+.......+...+....++.....
T Consensus 129 ----~~~~~~~~~~A~~~~~l~~i~~~~~~~l~~~~------------------p~l~~~l~~~l~~~l~~~~~~~~~l~ 186 (260)
T 3kcc_A 129 ----EGQERSAWVRAKTACEVAEISYKKFRQLIQVN------------------PDILMRLSAQMARRLQVTSEKVGNLA 186 (260)
T ss_dssp ----TTCBCCSEEEESSCEEEEEEEHHHHHHHHHHC------------------THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCCCceEEEECCCeEEEEEcHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12247889999999999999999999999999 45544444555556677788888888
Q ss_pred HHHHHhhhhhhhhh---cCC-------CCCcchhHHHHHHHH------HHHHHHhhhcCC
Q 006374 587 LYAKENILQDQKAE---AGG-------KPSKFGTAIYATQFF------TYVRRSVKRNGG 630 (648)
Q Consensus 587 ~~~a~ery~~~~~~---~p~-------~~~~~~~~~iAs~~~------~~~~~~~~~~~~ 630 (648)
..++++|+..++.. .++ +..++++..||+.+. +.+++-.++.|.
T Consensus 187 ~~~~~~Rla~~Ll~l~~~~~~~~~~~~~~l~lt~~~lA~~lG~sr~tvsR~l~~L~~~Gl 246 (260)
T 3kcc_A 187 FLLVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNL 246 (260)
T ss_dssp HCCHHHHHHHHHHHHHTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCCceeecCCHHHHHHHhCCCHHHHHHHHHHHHHCCC
Confidence 89999999876533 222 335789999999764 344555555554
No 28
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.67 E-value=4.8e-16 Score=141.59 Aligned_cols=116 Identities=16% Similarity=0.207 Sum_probs=98.4
Q ss_pred HHhcCCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEec-CCeeee-EEEEecCCCCeEe
Q 006374 419 EVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTS-VFKKYLSTGDFWG 496 (648)
Q Consensus 419 ~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~~~~~~-~~~~~l~~G~~fG 496 (648)
+.++++++|.++++++++.++..++.+.|++|++|+++|++++++|||.+|.|+++..+ +|++.+ ..+..+++|++||
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~fG 85 (142)
T 3mdp_A 6 ERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFG 85 (142)
T ss_dssp TGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEEC
T ss_pred HHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEec
Confidence 46889999999999999999999999999999999999999999999999999998743 332210 1168899999999
Q ss_pred chhhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhch
Q 006374 497 EELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 543 (648)
Q Consensus 497 e~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P 543 (648)
+.+++ .+ .++.++++|.++|+++.|++++|.++++++|
T Consensus 86 ~~~~~---~~------~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p 123 (142)
T 3mdp_A 86 VSSLI---KP------YHYTSSARATKPVRVVDINGARLREMSENNQ 123 (142)
T ss_dssp GGGSS---TT------CBCSSEEEESSCEEEEEEEHHHHHHHHHHCH
T ss_pred hHHHc---CC------CCceEEEEECCcEEEEEEeHHHHHHHHHHCh
Confidence 98873 22 2378899999999999999999999999993
No 29
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.66 E-value=9.7e-17 Score=145.68 Aligned_cols=125 Identities=41% Similarity=0.731 Sum_probs=102.5
Q ss_pred HHhcCCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEech
Q 006374 419 EVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEE 498 (648)
Q Consensus 419 ~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~ 498 (648)
++++++++|.++++++++.++..++.+.|++|++|+++||.++.+|||.+|.|+++..++|++.+..+..+++|++||+.
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~ 85 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDE 85 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTH
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHH
Confidence 35788999999999999999999999999999999999999999999999999976555566544223399999999999
Q ss_pred hhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhch
Q 006374 499 LATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 543 (648)
Q Consensus 499 ~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P 543 (648)
++++.+++.+....+++.++++|.++|+++.|++++|.++++++|
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p 130 (137)
T 1wgp_A 86 LLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFR 130 (137)
T ss_dssp HHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHC
T ss_pred HHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCH
Confidence 851112332211112367899999999999999999999999994
No 30
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.64 E-value=1e-15 Score=154.00 Aligned_cols=180 Identities=12% Similarity=0.078 Sum_probs=144.0
Q ss_pred HhcCCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEe-cCCeeeeEEEEecCCCCeEech
Q 006374 420 VLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTT-NGGRNTSVFKKYLSTGDFWGEE 498 (648)
Q Consensus 420 ~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~-~~~~~~~~~~~~l~~G~~fGe~ 498 (648)
++.++..+..+++++++.++..++.+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +..+++|++||+
T Consensus 10 ~~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~G~- 86 (250)
T 3e6c_C 10 FCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKL--LYYAGGNSLIGK- 86 (250)
T ss_dssp CCCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEE--EEEECTTCEECC-
T ss_pred hhhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEEee-
Confidence 344454558899999999999999999999999999999999999999999999974 4556544 799999999999
Q ss_pred hhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhchhhhhhhhhhHHHHhhhchhhhhhHHhHHHHHHHHH
Q 006374 499 LATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRY 578 (648)
Q Consensus 499 ~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~ 578 (648)
.+ . .. +.++++|+++|+++.|++++|.+++.++ |.+.......+...+...
T Consensus 87 ~l----~------~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~l~~~l~~~l~~~ 137 (250)
T 3e6c_C 87 LY----P------TG-NNIYATAMEPTRTCWFSEKSLRTVFRTD------------------EDMIFEIFKNYLTKVAYY 137 (250)
T ss_dssp CS----C------CS-CCEEEEESSSEEEEEECHHHHHHHHHHC------------------THHHHHHHHHHHHHHHHH
T ss_pred ec----C------CC-CceEEEEcccEEEEEEcHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHH
Confidence 32 1 12 6789999999999999999999999999 555555555666667778
Q ss_pred HhhhhhhhHHHHHhhhhhhhh----hcC-------CCCCcchhHHHHHHHH------HHHHHHhhhcCCC
Q 006374 579 KKRKLEGSLYAKENILQDQKA----EAG-------GKPSKFGTAIYATQFF------TYVRRSVKRNGGL 631 (648)
Q Consensus 579 ~~r~~~~~~~~a~ery~~~~~----~~p-------~~~~~~~~~~iAs~~~------~~~~~~~~~~~~~ 631 (648)
.++.......++++|+..++. .+| .+..++++..||+.+. +.+++..++.|..
T Consensus 138 ~~~~~~~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I 207 (250)
T 3e6c_C 138 ARQVAEMNTYNPTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEITGVHHVTVSRVLASLKRENIL 207 (250)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCe
Confidence 888888888999999977763 333 2456889999999873 3445555666654
No 31
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.63 E-value=1.6e-15 Score=140.06 Aligned_cols=116 Identities=11% Similarity=0.205 Sum_probs=100.4
Q ss_pred HHHhcCCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEec-CCeeeeEEEEecCCCCeEe
Q 006374 418 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWG 496 (648)
Q Consensus 418 ~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fG 496 (648)
.++++++++|.++++++++.++..++.+.|++|++|+++|++++++|||.+|.|+++..+ +|++.+ +..+++|++||
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G 88 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKI--LEVTNERNTFA 88 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----C--CEEECTTEEES
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEE--EEEccCCCeec
Confidence 568999999999999999999999999999999999999999999999999999999743 355444 78999999999
Q ss_pred chhhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhch
Q 006374 497 EELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 543 (648)
Q Consensus 497 e~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P 543 (648)
+.+++ . +.+++.++++|.++|+++.|++++|.++++++|
T Consensus 89 ~~~~~---~-----~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p 127 (154)
T 2z69_A 89 EAMMF---M-----DTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNT 127 (154)
T ss_dssp GGGGG---S-----SCSBCSSEEEESSSEEEEEEEHHHHHHHHTTCH
T ss_pred cHhhc---c-----CCCCCceEEEEccceEEEEECHHHHHHHHHHCh
Confidence 99874 1 112278899999999999999999999999994
No 32
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.61 E-value=1.4e-15 Score=140.92 Aligned_cols=65 Identities=11% Similarity=0.151 Sum_probs=57.3
Q ss_pred HHHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Q 006374 293 KKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEI 357 (648)
Q Consensus 293 ~~Yi~slYwa~~TmttvGyGdi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~ii~~~~~~~~~~ 357 (648)
..|..|+||+++|||||||||++|.|..+++++++.+++|.+++|+.+|.+++.+.+...+..+.
T Consensus 83 ~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~~~~~ 147 (155)
T 2a9h_A 83 ISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERRGH 147 (155)
T ss_dssp TSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC-----
T ss_pred CcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999877654443
No 33
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.61 E-value=5.7e-15 Score=137.10 Aligned_cols=116 Identities=17% Similarity=0.281 Sum_probs=103.3
Q ss_pred HHHHHHHHhcCCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCC
Q 006374 413 KSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTG 492 (648)
Q Consensus 413 ~~~~~~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G 492 (648)
......++|+++++|.+++++++..++..++.+.|++|++|+++|++++++|||.+|.|+++. +++ .+..+++|
T Consensus 32 ~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~~~----~~~~~~~G 105 (154)
T 3pna_A 32 TMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NNE----WATSVGEG 105 (154)
T ss_dssp HHHHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE--TTE----EEEEECTT
T ss_pred HHHHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE--CCE----EEEEecCC
Confidence 345567889999999999999999999999999999999999999999999999999999997 333 26889999
Q ss_pred CeEechhhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhch
Q 006374 493 DFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 543 (648)
Q Consensus 493 ~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P 543 (648)
++||+.+++. +. ++.++++|+++|+++.|++++|.++++++|
T Consensus 106 ~~fGe~~~~~---~~------~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~ 147 (154)
T 3pna_A 106 GSFGELALIY---GT------PRAATVKAKTNVKLWGIDRDSYRRILMGST 147 (154)
T ss_dssp CEECCHHHHH---CC------CCSSEEEESSCEEEEEEEHHHHHHHTHHHH
T ss_pred CEeeehHhhc---CC------CcceEEEECcceEEEEEeHHHHHHHHHhCh
Confidence 9999998752 22 378899999999999999999999999994
No 34
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.60 E-value=1.3e-14 Score=145.33 Aligned_cols=172 Identities=10% Similarity=0.054 Sum_probs=133.1
Q ss_pred HHHHHHHHhcCe---eEEecCCeEEEccCCCcCeEEEEEeeeEEEEEe-cCCeeeeEEEEecCCCCeEechhhhccCCCC
Q 006374 432 KSILSEMCKCLK---PVLYVQECCIVKEGDPICEMFFITQGTLLTTTT-NGGRNTSVFKKYLSTGDFWGEELATSALDPD 507 (648)
Q Consensus 432 ~~~l~~L~~~l~---~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~-~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~ 507 (648)
+++++.++.... .+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +..+++|++||+.+++ .+.
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~--l~~~~~g~~~G~~~~~---~~~ 104 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEIT--VALLRENSVFGVLSLL---TGN 104 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEE--EEEECTTCEESCHHHH---SSC
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEEcchHHh---CCC
Confidence 678888888888 999999999999999999999999999999974 3455544 7999999999998874 221
Q ss_pred CCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhchhhhhhhhhhHHHHhhhchhhhhhHHhHHHHHHHHHHhhhhhhhH
Q 006374 508 PLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSL 587 (648)
Q Consensus 508 ~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~~~r~~~~~~ 587 (648)
+ .++.++++|+++|+++.|++++|.++++++ |.+.......+...+....++......
T Consensus 105 ~----~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~l~~~l~~~l~~~~~~~~~l~~ 162 (243)
T 3la7_A 105 K----SDRFYHAVAFTPVELLSAPIEQVEQALKEN------------------PELSMLMLRGLSSRILQTEMMIETLAH 162 (243)
T ss_dssp C----SBCCEEEEESSSEEEEEEEHHHHHHHHTTC------------------HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred C----CcceEEEEEccceEEEEEcHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 024589999999999999999999999999 444444444455556667777777888
Q ss_pred HHHHhhhhhhhhhc-----------CCCCCcchhHHHHHHHH------HHHHHHhhhcCC
Q 006374 588 YAKENILQDQKAEA-----------GGKPSKFGTAIYATQFF------TYVRRSVKRNGG 630 (648)
Q Consensus 588 ~~a~ery~~~~~~~-----------p~~~~~~~~~~iAs~~~------~~~~~~~~~~~~ 630 (648)
.++++|+..++... +.+..++++..||+.+. +.+++-.++.|.
T Consensus 163 ~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~lt~~~lA~~lG~sr~tvsR~l~~L~~~Gl 222 (243)
T 3la7_A 163 RDMGSRLVSFLLILCRDFGVPCADGITIDLKLSHQAIAEAIGSTRVTVTRLLGDLREKKM 222 (243)
T ss_dssp SSHHHHHHHHHHHHHHHHEEECSSSEEECSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCeEEeccCCHHHHHHHHCCcHHHHHHHHHHHHHCCC
Confidence 88999988776542 23567899999998874 334444455554
No 35
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.60 E-value=1.1e-15 Score=138.44 Aligned_cols=124 Identities=19% Similarity=0.274 Sum_probs=108.1
Q ss_pred cccchhhhHHHHHHHHhcCCcccccCCHHHHHHHHhcCeeEEec-CCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeee
Q 006374 405 PVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYV-QECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTS 483 (648)
Q Consensus 405 p~~Lr~~i~~~~~~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~-kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~ 483 (648)
||..|.+-......++++++++|..++++.++.++..++.+.|+ +|++|+++|+.++.+|||.+|.|+++..+ |++
T Consensus 2 ~p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~-g~~-- 78 (134)
T 2d93_A 2 SSGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISHPD-GKV-- 78 (134)
T ss_dssp CCSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEECSS-SCE--
T ss_pred ChhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEcCC-CcE--
Confidence 67777777777778899999999999999999999999999999 99999999999999999999999999744 332
Q ss_pred EEEEecCCCCeEechhhhccCCCCCCCCCCCcceEE-EEeceEEEEEEeHHHHHHHHHhch
Q 006374 484 VFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCAL-ISVTNVEAFAINTDDLRAIVYQYW 543 (648)
Q Consensus 484 ~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv-~A~~~~~ll~Ls~~df~~ll~~~P 543 (648)
..+++|++||+.+++ .+. ++.+++ +|.++|+++.|++++|.+++++++
T Consensus 79 ---~~l~~G~~fG~~~~~---~~~------~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~ 127 (134)
T 2d93_A 79 ---ENLFMGNSFGITPTL---DKQ------YMHGIVRTKVDDCQFVCIAQQDYWRILNHVE 127 (134)
T ss_dssp ---EEECTTCEESCCSSS---CCE------ECCSEEEESSSSEEEEEEEHHHHHHHSSCCS
T ss_pred ---EEecCCCccChhHhc---CCC------cceeEEEEEecceEEEEEeHHHHHHHHHHHH
Confidence 457899999998863 222 366788 999999999999999999999884
No 36
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.59 E-value=1.3e-14 Score=131.60 Aligned_cols=110 Identities=23% Similarity=0.430 Sum_probs=98.8
Q ss_pred HHHHhcCCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEe
Q 006374 417 CLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 496 (648)
Q Consensus 417 ~~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 496 (648)
..++++++++|.+++++++..++..++.+.|++|++|+++|++++++|||.+|.|+++..+ . ..+++|++||
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~------~~~~~G~~~G 80 (138)
T 1vp6_A 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN--P------VELGPGAFFG 80 (138)
T ss_dssp HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS--C------EEECTTCEEC
T ss_pred HHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC--c------ceECCCCEee
Confidence 3568999999999999999999999999999999999999999999999999999998654 1 4689999999
Q ss_pred chhhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhch
Q 006374 497 EELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 543 (648)
Q Consensus 497 e~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P 543 (648)
+.+++ .+. ++.++++|.++|+++.|++++|.++++++|
T Consensus 81 ~~~~~---~~~------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p 118 (138)
T 1vp6_A 81 EMALI---SGE------PRSATVSAATTVSLLSLHSADFQMLCSSSP 118 (138)
T ss_dssp HHHHH---HCC------CCSSCEEESSSEEEEEEEHHHHHHHHHHCH
T ss_pred ehHhc---cCC------CceeEEEECCCEEEEEECHHHHHHHHHHCH
Confidence 99875 221 367899999999999999999999999994
No 37
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.59 E-value=1.8e-14 Score=148.88 Aligned_cols=130 Identities=20% Similarity=0.315 Sum_probs=116.3
Q ss_pred HHHhcccccchhhhHHHHHHHHhcCCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecC
Q 006374 399 NLLNNLPVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNG 478 (648)
Q Consensus 399 ~ll~~Lp~~Lr~~i~~~~~~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~ 478 (648)
.-..++|+..|.+...+...+.++++++|.+++++++..++..++.+.|++|++|+++||.++.+|||.+|.|+++. +|
T Consensus 19 ~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~-~g 97 (299)
T 3shr_A 19 GSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK-EG 97 (299)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE-TT
T ss_pred cccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE-CC
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999965 33
Q ss_pred CeeeeEEEEecCCCCeEechhhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhch
Q 006374 479 GRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 543 (648)
Q Consensus 479 ~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P 543 (648)
. .+..+.+|++|||.+++ .+ .++.++++|.++|+++.|++++|++++.++|
T Consensus 98 -~----~~~~~~~G~~fGe~~ll---~~------~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~ 148 (299)
T 3shr_A 98 -V----KLCTMGPGKVFGELAIL---YN------CTRTATVKTLVNVKLWAIDRQCFQTIMMRTG 148 (299)
T ss_dssp -E----EEEEECTTCEESCSGGG---TT------TBCCSEEEESSCEEEEEECHHHHHHHHHHHH
T ss_pred -E----EEEEeCCCCeeeHhHHh---cC------CCCCcEEEEcCCeEEEEEcHHHHHHHhhHhH
Confidence 2 26899999999999874 22 2488999999999999999999999999995
No 38
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.58 E-value=3.7e-14 Score=141.54 Aligned_cols=175 Identities=13% Similarity=0.070 Sum_probs=132.3
Q ss_pred ccCCHHHHHHHHh--cCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEe-cCCeeeeEEEEecCCCCeEechhhhccC
Q 006374 428 QMMGKSILSEMCK--CLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTT-NGGRNTSVFKKYLSTGDFWGEELATSAL 504 (648)
Q Consensus 428 ~~ls~~~l~~L~~--~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~-~~~~~~~~~~~~l~~G~~fGe~~l~~~l 504 (648)
++++++++..+.. .++.+.|++|++|+++||+++++|||.+|.|+++.. .+|++.+ +..+ +|++||+.+++
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~--~~~~-~G~~~Ge~~~~--- 75 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMN--LQYY-KGAFVIMSGFI--- 75 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEE--EEEE-ESSEEEESBCT---
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEE--EEEc-CCCEecchhhh---
Confidence 3688999999885 599999999999999999999999999999999874 3455554 6778 99999999864
Q ss_pred CCCCCCCCCC-cceEEEEe-ceEEEEEEeHHHHHHHHHhchhhhhhhhhhHHHHhhhchhhhhhHHhHHHHHHHHHHhhh
Q 006374 505 DPDPLSNIPH-SNCALISV-TNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRK 582 (648)
Q Consensus 505 ~~~~~~~~~~-~~~tv~A~-~~~~ll~Ls~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~~~r~ 582 (648)
.+. ++ +..++.|+ ++|+++.|++++|.++++++ |.+.......+...+....++.
T Consensus 76 ~~~-----~~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~~~l~~~~~~~ 132 (238)
T 2bgc_A 76 DTE-----TSVGYYNLEVISEQATAYVIKINELKELLSKN------------------LTHFFYVFQTLQKQVSYSLAKF 132 (238)
T ss_dssp TTC-----CBSCCCEEEECSSEEEEEEEEHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCC-----CcCcceeEEEEEcceEEEEEeHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 211 11 25678888 59999999999999999999 4444444455555666777888
Q ss_pred hhhhHHHHHhhhhhhhhh--------cC---CCCC-cchhHHHHHHHH-------HHHHHHhhhcCCC
Q 006374 583 LEGSLYAKENILQDQKAE--------AG---GKPS-KFGTAIYATQFF-------TYVRRSVKRNGGL 631 (648)
Q Consensus 583 ~~~~~~~a~ery~~~~~~--------~p---~~~~-~~~~~~iAs~~~-------~~~~~~~~~~~~~ 631 (648)
......++++|+..++.. .| .+.. .+++.+||+.+. +.+++..++.|..
T Consensus 133 ~~~~~~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI 200 (238)
T 2bgc_A 133 NDFSINGKLGSICSQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVI 200 (238)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHEEEETTEEEECCSCCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHccCHHHHHHHHHHHHHHHhCCCCCCceEEEeccCCHHHHHHHhCCChHHHHHHHHHHHHHCCCE
Confidence 888889999999887753 13 2345 789999998553 3344455556653
No 39
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.56 E-value=1.5e-14 Score=133.57 Aligned_cols=86 Identities=15% Similarity=0.145 Sum_probs=70.7
Q ss_pred HHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHh----ccccHHHHHHHHHHH
Q 006374 295 FIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTI------YLQS----GTIKLEEIKSKAREI 364 (648)
Q Consensus 295 Yi~slYwa~~TmttvGyGdi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~------ii~~----~~~~~~~~~~~~~~i 364 (648)
|..|+||+++|+|||||||++|.|..+++++++.+++|++++++.++.++. +... .+....+..++++++
T Consensus 53 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i 132 (148)
T 3vou_A 53 PLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAI 132 (148)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999986 3332 244456667789999
Q ss_pred HHHHHhCCCCHHHHHH
Q 006374 365 EQWRTFEMLSQSLQQR 380 (648)
Q Consensus 365 ~~~m~~~~lp~~L~~r 380 (648)
++++++++.|++|+.|
T Consensus 133 ~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 133 EKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHTTC------
T ss_pred HHHHHhcCCCcCCCCC
Confidence 9999999999999876
No 40
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.56 E-value=3.1e-15 Score=136.08 Aligned_cols=93 Identities=10% Similarity=0.148 Sum_probs=56.6
Q ss_pred HHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCC
Q 006374 294 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTFEML 373 (648)
Q Consensus 294 ~Yi~slYwa~~TmttvGyGdi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~ii~~~~~~~~~~~~~~~~i~~~m~~~~l 373 (648)
.|..|+||+++|||||||||++|.|..|++++++++++|++++|+++|.+++.+.+......+.++..+..+...+..++
T Consensus 43 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 122 (137)
T 4h33_A 43 NYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDL 122 (137)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC--------------------
T ss_pred CHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 37889999999999999999999999999999999999999999999999999987766655544433333334445566
Q ss_pred CHHHHHHHHHHHH
Q 006374 374 SQSLQQRVRNHQQ 386 (648)
Q Consensus 374 p~~L~~rv~~y~~ 386 (648)
+++....++++.+
T Consensus 123 ~~~~i~~l~~~l~ 135 (137)
T 4h33_A 123 TKEEIAVVEQFLT 135 (137)
T ss_dssp -------------
T ss_pred cHHHHHHHHHHHh
Confidence 6666666666654
No 41
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.53 E-value=7.4e-14 Score=144.22 Aligned_cols=118 Identities=24% Similarity=0.397 Sum_probs=105.1
Q ss_pred HHHHHHhcCCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEec--CCeeeeEEEEecCCC
Q 006374 415 ELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN--GGRNTSVFKKYLSTG 492 (648)
Q Consensus 415 ~~~~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~--~~~~~~~~~~~l~~G 492 (648)
..+.++++++++|..++++.+..++..++.+.|++|++|+++||.++.+|+|.+|.|+++..+ +|++.. +..+++|
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~--~~~l~~G 230 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVF--LRTLGKG 230 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEE--EEEEETT
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceE--EEEcCCC
Confidence 345678899999999999999999999999999999999999999999999999999999854 455443 7999999
Q ss_pred CeEechhhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhch
Q 006374 493 DFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 543 (648)
Q Consensus 493 ~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P 543 (648)
++|||.+++ .+. ++.++++|.++|+++.|++++|.+++.++|
T Consensus 231 ~~fGe~~ll---~~~------~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p 272 (299)
T 3shr_A 231 DWFGEKALQ---GED------VRTANVIAAEAVTCLVIDRDSFKHLIGGLD 272 (299)
T ss_dssp CEECGGGGS---SSE------ECSSEEEESSSEEEEEEEHHHHHHHHTTCC
T ss_pred CEeChHHHh---CCC------CcceEEEECCCEEEEEEeHHHHHHHHccHH
Confidence 999999874 222 378999999999999999999999999994
No 42
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.53 E-value=4.3e-14 Score=155.52 Aligned_cols=130 Identities=16% Similarity=0.259 Sum_probs=114.3
Q ss_pred ccccchhhhHHHHHHHHhcCCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEec-CCeee
Q 006374 404 LPVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNT 482 (648)
Q Consensus 404 Lp~~Lr~~i~~~~~~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~~~~~ 482 (648)
.|+..|.+-......+.++++++|.+++++++..++..++.+.|++|++|+++||.++.+|+|.+|.|+++..+ +|++.
T Consensus 27 ~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~ 106 (469)
T 1o7f_A 27 KRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQD 106 (469)
T ss_dssp SCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGG
T ss_pred CChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCc
Confidence 57888988888888999999999999999999999999999999999999999999999999999999999743 33211
Q ss_pred eEEEEecCCCCeEechhhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhch
Q 006374 483 SVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 543 (648)
Q Consensus 483 ~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P 543 (648)
...+..+++|++||+.+ +. + .++.++++|.++|+++.|++++|.++++++|
T Consensus 107 ~~~~~~~~~G~~fGe~~-l~---~------~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p 157 (469)
T 1o7f_A 107 AVTICTLGIGTAFGESI-LD---N------TPRHATIVTRESSELLRIEQEDFKALWEKYR 157 (469)
T ss_dssp CEEEEEECTTCEECGGG-GG---T------CBCSSEEEESSSEEEEEEEHHHHHHHHHHHG
T ss_pred ceEEEEccCCCCcchhh-hC---C------CCccceEEEccceeEEEEcHHHHHHHHHhCH
Confidence 12379999999999987 42 1 2378999999999999999999999999995
No 43
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.53 E-value=9.2e-14 Score=145.85 Aligned_cols=113 Identities=13% Similarity=0.212 Sum_probs=101.3
Q ss_pred HHHhcCCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEec-CCeeeeEEEEecCCCCeEe
Q 006374 418 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWG 496 (648)
Q Consensus 418 ~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fG 496 (648)
.++|+++++|++++++++..++..++.+.|++|++|+++||+++++|||.+|.|+++..+ +|++ + +..+++|++||
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~-~--~~~~~~G~~fG 88 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA-I--IARALPGMIVG 88 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCE-E--EEEECTTCEES
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcE-E--EEEecCCCEee
Confidence 468899999999999999999999999999999999999999999999999999999754 3443 3 78999999999
Q ss_pred chhhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhch
Q 006374 497 EELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 543 (648)
Q Consensus 497 e~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P 543 (648)
+.+++. + .++.++++|+++|+++.|++++|.+++ ++|
T Consensus 89 e~~l~~---~------~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p 125 (333)
T 4ava_A 89 EIALLR---D------SPRSATVTTIEPLTGWTGGRGAFATMV-HIP 125 (333)
T ss_dssp HHHHHH---T------CBCSSEEEESSCEEEEEECHHHHHHHH-HST
T ss_pred HHHhcC---C------CCceEEEEEecCEEEEEEcHHHHHHHH-hCh
Confidence 998752 2 237899999999999999999999999 894
No 44
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.50 E-value=4.2e-14 Score=125.98 Aligned_cols=58 Identities=14% Similarity=0.202 Sum_probs=54.9
Q ss_pred HHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 006374 294 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGT 351 (648)
Q Consensus 294 ~Yi~slYwa~~TmttvGyGdi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~ii~~~~ 351 (648)
.|..|+||++.|+|||||||++|.|..+++++++.+++|.+++|+.+|.+++.+.+..
T Consensus 61 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~ 118 (122)
T 2ih3_C 61 TYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGRE 118 (122)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999999999999999999999987543
No 45
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.50 E-value=1.6e-13 Score=148.77 Aligned_cols=125 Identities=12% Similarity=0.148 Sum_probs=111.7
Q ss_pred chhhhHHHHHHHHhcCCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEE
Q 006374 408 LNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKK 487 (648)
Q Consensus 408 Lr~~i~~~~~~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~ 487 (648)
-|.+-......+.|+++++|++++++.+..++..++.+.|++|++|+++||.++.+|+|.+|.|+++...+|++.. +.
T Consensus 134 ~ks~~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~~--v~ 211 (416)
T 3tnp_B 134 PKTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC--VG 211 (416)
T ss_dssp CCCHHHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEEE--EE
T ss_pred CCCHHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEEE--EE
Confidence 3556666677889999999999999999999999999999999999999999999999999999999866666554 78
Q ss_pred ecCCCCeEechhhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhch
Q 006374 488 YLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 543 (648)
Q Consensus 488 ~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P 543 (648)
.+++|++||+.+++ .+ .++.++++|.++|+++.|++++|.+++.++|
T Consensus 212 ~l~~G~~fGe~all---~~------~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~ 258 (416)
T 3tnp_B 212 NYDNRGSFGELALM---YN------TPKAATITATSPGALWGLDRVTFRRIIVKNN 258 (416)
T ss_dssp EEESCCEECGGGGT---SC------CCCSSEEEESSSEEEEEEEHHHHHHHHHHHH
T ss_pred EecCCCEEeeHHHh---cC------CCcccEEEEccCeEEEEEeehhhhhhhhcch
Confidence 99999999999874 22 2388999999999999999999999999995
No 46
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.49 E-value=5.9e-13 Score=136.68 Aligned_cols=117 Identities=17% Similarity=0.238 Sum_probs=102.4
Q ss_pred HHHHHhcCCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEec--CCeeeeEEEEecCCCC
Q 006374 416 LCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN--GGRNTSVFKKYLSTGD 493 (648)
Q Consensus 416 ~~~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~--~~~~~~~~~~~l~~G~ 493 (648)
+...++++++.|..++++.+..++..++...|++|++|+++|+.++.+|+|.+|.|+++... ++++. .+..+++|+
T Consensus 154 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~--~~~~l~~G~ 231 (291)
T 2qcs_B 154 MYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFV--EVGRLGPSD 231 (291)
T ss_dssp HHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEE--EEEEECTTC
T ss_pred HHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccE--EEEEeCCCC
Confidence 34567788999999999999999999999999999999999999999999999999998643 33333 379999999
Q ss_pred eEechhhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhch
Q 006374 494 FWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 543 (648)
Q Consensus 494 ~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P 543 (648)
+|||.+++ .+. ++.++++|.++|+++.|++++|.+++.++|
T Consensus 232 ~fGe~~ll---~~~------~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p 272 (291)
T 2qcs_B 232 YFGEIALL---MNR------PKAATVVARGPLKCVKLDRPRFERVLGPCS 272 (291)
T ss_dssp EECSGGGT---CCC------CCSSEEEEEEEEEEEEEEHHHHHHHHCCHH
T ss_pred EecHHHHc---CCC------CcceEEEECCcEEEEEEcHHHHHHHhccHH
Confidence 99999874 222 388999999999999999999999999994
No 47
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.48 E-value=1.6e-13 Score=136.93 Aligned_cols=112 Identities=14% Similarity=0.206 Sum_probs=100.8
Q ss_pred HHHHhcCCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEe
Q 006374 417 CLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 496 (648)
Q Consensus 417 ~~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 496 (648)
..+.|+++++|.+++++.++.++..++.+.|++|++|+++||+++++|+|.+|.|+++. ++ +. +..+++|++||
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~-~~-~~----~~~~~~g~~fG 78 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV-ND-NK----VNSSGPGSSFG 78 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES-TT-SC----CEEECTTCEEC
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE-CC-EE----EEecCCCCeee
Confidence 46789999999999999999999999999999999999999999999999999999986 33 22 58899999999
Q ss_pred chhhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhch
Q 006374 497 EELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 543 (648)
Q Consensus 497 e~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P 543 (648)
+.+++. +. ++.++++|.++|+++.|++++|.+++.++|
T Consensus 79 e~~l~~---~~------~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~ 116 (246)
T 3of1_A 79 ELALMY---NS------PRAATVVATSDCLLWALDRLTFRKILLGSS 116 (246)
T ss_dssp HHHHHH---TC------CCSSEEEESSCEEEEEEEHHHHHHTTTTTT
T ss_pred hhHHhc---CC------CCCcEEEECCCeEEEEEEhHHHHHHHHHhH
Confidence 998752 22 378999999999999999999999999995
No 48
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.48 E-value=3.9e-13 Score=137.99 Aligned_cols=120 Identities=18% Similarity=0.256 Sum_probs=106.2
Q ss_pred hhhhHHHHHHHHhcCCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEe
Q 006374 409 NWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKY 488 (648)
Q Consensus 409 r~~i~~~~~~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~ 488 (648)
|..-......+.|+++++|.+++++++..++..++.+.|++|++|+++||.++.+|+|.+|.|+++. +| . .+..
T Consensus 29 ks~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~g-~----~~~~ 102 (291)
T 2qcs_B 29 KDYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-NN-E----WATS 102 (291)
T ss_dssp CCHHHHHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE-TT-E----EEEE
T ss_pred CCHHHHHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE-CC-e----EEEE
Confidence 4444556678899999999999999999999999999999999999999999999999999999998 33 2 2689
Q ss_pred cCCCCeEechhhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhch
Q 006374 489 LSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 543 (648)
Q Consensus 489 l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P 543 (648)
+++|++||+.+++ .+ .++.++++|.++|+++.|++++|.+++.++|
T Consensus 103 l~~G~~fGe~~l~---~~------~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~ 148 (291)
T 2qcs_B 103 VGEGGSFGELALI---YG------TPRAATVKAKTNVKLWGIDRDSYRRILMGST 148 (291)
T ss_dssp ECTTCEECGGGGT---CC------CBCSSEEEESSCEEEEEEEHHHHHHHHHHHH
T ss_pred cCCCCccchHHHh---cC------CCCceEEEECCCEEEEEEEhHHHHHHHhhhH
Confidence 9999999998874 22 2378999999999999999999999999994
No 49
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.47 E-value=1.6e-13 Score=136.95 Aligned_cols=114 Identities=14% Similarity=0.269 Sum_probs=102.0
Q ss_pred HHHHHhcCCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeE
Q 006374 416 LCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFW 495 (648)
Q Consensus 416 ~~~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~f 495 (648)
++..++++++.|..++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.|+++..+++ .+..+++|++|
T Consensus 122 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~-----~~~~l~~g~~f 196 (246)
T 3of1_A 122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG-----VINKLKDHDYF 196 (246)
T ss_dssp HSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTE-----EEEEEETTCEE
T ss_pred HHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCc-----eEEEcCCCCcc
Confidence 3456778889999999999999999999999999999999999999999999999999986544 26899999999
Q ss_pred echhhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhch
Q 006374 496 GEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 543 (648)
Q Consensus 496 Ge~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P 543 (648)
||.+++. +. ++.++++|.++|+++.|++++|.+++..+|
T Consensus 197 Ge~~~~~---~~------~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~ 235 (246)
T 3of1_A 197 GEVALLN---DL------PRQATVTATKRTKVATLGKSGFQRLLGPAV 235 (246)
T ss_dssp CHHHHHH---TC------BCSSEEEESSCEEEEEEEHHHHHHHCTTHH
T ss_pred cHHHHhC---CC------CcccEEEECCCEEEEEEeHHHHHHHhccHH
Confidence 9998752 22 378999999999999999999999999995
No 50
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.42 E-value=5.1e-13 Score=128.91 Aligned_cols=151 Identities=12% Similarity=0.071 Sum_probs=112.0
Q ss_pred EEecCCeEEEccCCCcCeEEEEEeeeEEEEEec-CCeeeeEEEEecCCCCeEechhhhccCCCCCCCCCCCcceEEEEec
Q 006374 445 VLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVT 523 (648)
Q Consensus 445 ~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~ 523 (648)
+.|++|++|+++|++++++|||.+|.|+++..+ +|++.+ +..+++|++||+ +++ ++. ++.++++|++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~Ge-~~~---~~~------~~~~~~~A~~ 69 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLIT--LRHVLPGDYFGE-EAL---EGK------AYRYTAEAMT 69 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEE--EEEECTTCEECG-GGG---TCS------BCSSEEEESS
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEech-hhh---CCC------CceeEEEECC
Confidence 679999999999999999999999999998743 455544 799999999999 874 222 3788999999
Q ss_pred eEEEEEEeHHHHHHHHHhchhhhhhhhhhHHHHhhhchhhhhhHHhHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhh---
Q 006374 524 NVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLYAKENILQDQKAE--- 600 (648)
Q Consensus 524 ~~~ll~Ls~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~~~r~~~~~~~~a~ery~~~~~~--- 600 (648)
+|+++.|++++|. | .+.......+...+....++.......++++|+..++..
T Consensus 70 ~~~v~~i~~~~~~------p------------------~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~~L~~l~~ 125 (195)
T 3b02_A 70 EAVVQGLEPRAMD------H------------------EALHRVARNLARQMRRVQAYEAHLQTGELRARIARYLLFLAD 125 (195)
T ss_dssp SEEEEEECGGGCC------H------------------HHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTT
T ss_pred cEEEEEEcHHHcC------H------------------HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 9999999999987 2 111111223334455677788888889999999887755
Q ss_pred -cCC------CCCcchhHHHHHHHH------HHHHHHhhhcCCC
Q 006374 601 -AGG------KPSKFGTAIYATQFF------TYVRRSVKRNGGL 631 (648)
Q Consensus 601 -~p~------~~~~~~~~~iAs~~~------~~~~~~~~~~~~~ 631 (648)
++. +...+++..||+.+. +.+++..++.|..
T Consensus 126 ~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I 169 (195)
T 3b02_A 126 TPLSARDRQGIYVTVSHEEIADATASIRESVSKVLADLRREGLI 169 (195)
T ss_dssp STTEEEETTEEEEECCHHHHHHTTTSCHHHHHHHHHHHHHHTSE
T ss_pred HcCCCCCCCeeeccCCHHHHHHHhCCCHHHHHHHHHHHHHCCCE
Confidence 222 456788999998663 3344445555553
No 51
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.42 E-value=6e-13 Score=142.55 Aligned_cols=120 Identities=16% Similarity=0.235 Sum_probs=106.1
Q ss_pred hhhhHHHHHHHHhcCCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEe
Q 006374 409 NWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKY 488 (648)
Q Consensus 409 r~~i~~~~~~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~ 488 (648)
|.+-......+.|+++++|.+++++.+..++..++.+.|++|++|+++||.++++|+|.+|.|+++. + ++ .+..
T Consensus 120 ks~~~~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~-~-~~----~v~~ 193 (381)
T 4din_B 120 KDYKTMTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV-N-GE----WVTN 193 (381)
T ss_dssp CCHHHHHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE-T-TE----EEEE
T ss_pred CCHHHHHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE-C-Ce----Eeee
Confidence 4455556667899999999999999999999999999999999999999999999999999999997 3 33 2678
Q ss_pred cCCCCeEechhhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhch
Q 006374 489 LSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 543 (648)
Q Consensus 489 l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P 543 (648)
+++|++||+.+++ .+ .++.++++|.++|+++.|++++|.+++.++|
T Consensus 194 l~~G~~fGe~all---~~------~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~ 239 (381)
T 4din_B 194 ISEGGSFGELALI---YG------TPRAATVKAKTDLKLWGIDRDSYRRILMGST 239 (381)
T ss_dssp EESSCCBCGGGGT---SC------CBCSSEEEESSSCEEEEEEHHHHHHHHHHHH
T ss_pred CCCCCEEEchHHh---cC------CCcceEEEECCCEEEEEEchHHHHHhhhhhh
Confidence 9999999999874 22 2378999999999999999999999999994
No 52
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.42 E-value=8.1e-13 Score=143.16 Aligned_cols=115 Identities=12% Similarity=0.222 Sum_probs=99.4
Q ss_pred HHHhcCCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecC-------CeeeeEEEEecC
Q 006374 418 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNG-------GRNTSVFKKYLS 490 (648)
Q Consensus 418 ~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~-------~~~~~~~~~~l~ 490 (648)
..++++++.|..++++++..++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+. |++.. +..++
T Consensus 266 ~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~--l~~l~ 343 (416)
T 3tnp_B 266 ESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVE--IARCF 343 (416)
T ss_dssp SSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CE--EEEEC
T ss_pred HHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeE--EEEeC
Confidence 3467778899999999999999999999999999999999999999999999999997443 44443 79999
Q ss_pred CCCeEechhhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhch
Q 006374 491 TGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 543 (648)
Q Consensus 491 ~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P 543 (648)
+|++|||.+++ .+. ++.++++|.++|+++.|++++|.+++..+|
T Consensus 344 ~G~~fGE~all---~~~------~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p 387 (416)
T 3tnp_B 344 RGQYFGELALV---TNK------PRAASAHAIGTVKCLAMDVQAFERLLGPCM 387 (416)
T ss_dssp TTCEESGGGGT---CCS------CCSSEEEEEEEEEEEEEEHHHHHHHHCCHH
T ss_pred CCCEecHHHHh---CCC------CceeEEEEcCCeEEEEEEHHHHHHHhcchH
Confidence 99999999874 222 388999999999999999999999999994
No 53
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.41 E-value=6.1e-13 Score=121.48 Aligned_cols=59 Identities=15% Similarity=0.240 Sum_probs=54.5
Q ss_pred HHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 006374 294 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTI 352 (648)
Q Consensus 294 ~Yi~slYwa~~TmttvGyGdi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~ii~~~~~ 352 (648)
.|..|+||+++|+|||||||++|.|..+++++++.+++|+++++++++.+++.+.+...
T Consensus 40 ~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~ 98 (139)
T 3eff_K 40 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 98 (139)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHH
T ss_pred CHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999988755443
No 54
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.41 E-value=4.2e-13 Score=143.74 Aligned_cols=118 Identities=17% Similarity=0.240 Sum_probs=103.5
Q ss_pred HHHHHHhcCCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEec--CCeeeeEEEEecCCC
Q 006374 415 ELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN--GGRNTSVFKKYLSTG 492 (648)
Q Consensus 415 ~~~~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~--~~~~~~~~~~~l~~G 492 (648)
.++..++++++.|..++++++..++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+ ++++. .+..+++|
T Consensus 244 ~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~--~v~~l~~G 321 (381)
T 4din_B 244 KMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYV--EVGRLGPS 321 (381)
T ss_dssp HHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCC--EEEEECTT
T ss_pred HHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceE--EEEEeCCC
Confidence 345567888999999999999999999999999999999999999999999999999999853 33333 37899999
Q ss_pred CeEechhhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhch
Q 006374 493 DFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 543 (648)
Q Consensus 493 ~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P 543 (648)
++|||.+++ .+. ++.++++|.++|+++.|++++|.+++..+|
T Consensus 322 d~fGe~all---~~~------~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~ 363 (381)
T 4din_B 322 DYFGEIALL---LNR------PRAATVVARGPLKCVKLDRPRFERVLGPCS 363 (381)
T ss_dssp CEECTTGGG---SCC------BCSSEEEESSCBEEEEEEHHHHHHHHCCHH
T ss_pred CEechHHHh---CCC------CceeEEEEcCCEEEEEEeHHHHHHHHhhhH
Confidence 999999874 222 388999999999999999999999999994
No 55
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.38 E-value=3.3e-12 Score=140.45 Aligned_cols=125 Identities=11% Similarity=0.138 Sum_probs=106.1
Q ss_pred ccchhhhHHHHHHHHhcCCcccccCCHHHHHHHHhcCee-EEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeE
Q 006374 406 VNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKP-VLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSV 484 (648)
Q Consensus 406 ~~Lr~~i~~~~~~~~L~~i~~F~~ls~~~l~~L~~~l~~-~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~ 484 (648)
+.-|.+-......+.++++++|.+++++.+..++..+.. +.|++|++|+++||.++.+|||.+|.|+++..+. .
T Consensus 324 ~~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~-~---- 398 (469)
T 1o7f_A 324 PGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGK-G---- 398 (469)
T ss_dssp TTSCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTT-E----
T ss_pred chhcCHHHHHHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCC-e----
Confidence 334444444556778999999999999999999999985 4899999999999999999999999999997432 2
Q ss_pred EEEecCCCCeEechhhhccCCCCCCCCCCCcceEEEEec-eEEEEEEeHHHHHHHHHhchh
Q 006374 485 FKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVT-NVEAFAINTDDLRAIVYQYWQ 544 (648)
Q Consensus 485 ~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~-~~~ll~Ls~~df~~ll~~~P~ 544 (648)
.+..+++|++||+.+++ .+. ++.++++|.+ +|+++.|++++|.+++.++|+
T Consensus 399 ~~~~l~~G~~fGe~~ll---~~~------~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~ 450 (469)
T 1o7f_A 399 VVCTLHEGDDFGKLALV---NDA------PRAASIVLREDNCHFLRVDKEDFNRILRDVEA 450 (469)
T ss_dssp EEEEEETTCEECGGGGT---CCS------CCSSEEEESSSSEEEEEEEHHHHHHHHHHTTC
T ss_pred eEEEecCCCEEEEehhh---cCC------CceEEEEEecCCEEEEEEcHHHHHHHHHHChH
Confidence 27899999999999874 222 3889999999 799999999999999999963
No 56
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.35 E-value=1.5e-12 Score=126.24 Aligned_cols=158 Identities=15% Similarity=0.082 Sum_probs=112.8
Q ss_pred HHhcCeeEEecCCeEEEccCCCc--CeEEEEEeeeEEEEEec-CCeeeeEEEEecCCCCeEechhhhccCCCCCCCCCCC
Q 006374 438 MCKCLKPVLYVQECCIVKEGDPI--CEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPH 514 (648)
Q Consensus 438 L~~~l~~~~~~kge~I~~eGd~~--~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~ 514 (648)
+...++.+.|++|++|+++||++ +++|||.+|.|+++..+ +|++.+ +..+++|++||+ +++ .+ .+
T Consensus 1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G~-~~l---~~------~~ 68 (202)
T 2zcw_A 1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALT--LRLVRPGGFFGE-EAL---FG------QE 68 (202)
T ss_dssp -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEE--EEEECTTCEECT-HHH---HT------CC
T ss_pred CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEEecCCCEeee-hhc---CC------CC
Confidence 35678899999999999999999 99999999999998743 555544 799999999999 664 11 13
Q ss_pred cceEEEEeceEEEEEEeHHHHHHHHHhchhhhhhhhhhHHHHhhhchhhhhhHHhHHHHHHHHHHhhhhhhhHHHHHhhh
Q 006374 515 SNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLYAKENIL 594 (648)
Q Consensus 515 ~~~tv~A~~~~~ll~Ls~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~~~r~~~~~~~~a~ery 594 (648)
+.++++|+++|+++.| +++|. | .-+..+. ..+...+....++.......++++|+
T Consensus 69 ~~~~~~A~~~~~v~~i-~~~~~------p-----------------~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~Rl 123 (202)
T 2zcw_A 69 RIYFAEAATDVRLEPL-PENPD------P-----------------ELLKDLA-QHLSQGLAEAYRRIERLATQRLKNRM 123 (202)
T ss_dssp BCSEEEESSCEEEEEC-CSSCC------H-----------------HHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred cceEEEEcccEEEEEE-hHhcC------H-----------------HHHHHHH-HHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 7889999999999999 88875 2 1111111 22233455667777888888999999
Q ss_pred hhhhhhcC----------CCCCcchhHHHHHHHH------HHHHHHhhhcCCCC
Q 006374 595 QDQKAEAG----------GKPSKFGTAIYATQFF------TYVRRSVKRNGGLP 632 (648)
Q Consensus 595 ~~~~~~~p----------~~~~~~~~~~iAs~~~------~~~~~~~~~~~~~~ 632 (648)
..++.... .+...+++.+||+.+. +.+++..++.|...
T Consensus 124 ~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 177 (202)
T 2zcw_A 124 AAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVTKVIGELAREGYIR 177 (202)
T ss_dssp HHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 88776532 3456789999998764 33444455566543
No 57
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.30 E-value=1.2e-11 Score=148.48 Aligned_cols=128 Identities=18% Similarity=0.254 Sum_probs=108.7
Q ss_pred cccchhhhHHHHHHHHhcCCcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEec---CCee
Q 006374 405 PVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN---GGRN 481 (648)
Q Consensus 405 p~~Lr~~i~~~~~~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~---~~~~ 481 (648)
+|.-|.+-..++-...|+++++|+++++..+.+||..++.+.+++|++|+++||+++.+|+|++|.|.++..+ ++.+
T Consensus 28 ~p~~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~~~~~~ 107 (999)
T 4f7z_A 28 RPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDA 107 (999)
T ss_dssp CSSSCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSSCTTSC
T ss_pred CcccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCCCCCCc
Confidence 3355665555666678999999999999999999999999999999999999999999999999999999742 1222
Q ss_pred eeEEEEecCCCCeEechhhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhchh
Q 006374 482 TSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQ 544 (648)
Q Consensus 482 ~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P~ 544 (648)
..+..+++|+.||| +++ .+. +|+++++|.++|++++|++++|+.++.+||+
T Consensus 108 --~~v~~l~~G~sFGE-all---~n~------pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e 158 (999)
T 4f7z_A 108 --VTICTLGIGTAFGE-SIL---DNT------PRHATIVTRESSELLRIEQEDFKALWEKYRQ 158 (999)
T ss_dssp --EEEEEEETTCEECG-GGG---GTC------CCSSEEEESSSEEEEEEEHHHHHHHHHHHHH
T ss_pred --eeEEEecCCcchhh-hhc---cCC------CcceEEEeccceEEEEEEHHHHHHHHHhChH
Confidence 23789999999999 553 222 3899999999999999999999999999974
No 58
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.30 E-value=1e-11 Score=142.35 Aligned_cols=132 Identities=13% Similarity=0.189 Sum_probs=111.3
Q ss_pred HHHHhcccccchhhhHHHHHHHHhcCCcccccCCHHHHHHHHhcCe-eEEecCCeEEEccCCCcCeEEEEEeeeEEEEEe
Q 006374 398 ENLLNNLPVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLK-PVLYVQECCIVKEGDPICEMFFITQGTLLTTTT 476 (648)
Q Consensus 398 ~~ll~~Lp~~Lr~~i~~~~~~~~L~~i~~F~~ls~~~l~~L~~~l~-~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~ 476 (648)
..++.. |+..|.+.......+.++++++|.+++++++..++..+. .+.|++|++|+++||.++.+|||.+|.|+++..
T Consensus 12 r~iL~k-~p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~ 90 (694)
T 3cf6_E 12 RMILRK-PPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY 90 (694)
T ss_dssp HHHHHS-CGGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred HHHHcC-ChhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe
Confidence 455544 444566555566678999999999999999999999998 789999999999999999999999999999975
Q ss_pred cCCeeeeEEEEecCCCCeEechhhhccCCCCCCCCCCCcceEEEEec-eEEEEEEeHHHHHHHHHhchh
Q 006374 477 NGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVT-NVEAFAINTDDLRAIVYQYWQ 544 (648)
Q Consensus 477 ~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~-~~~ll~Ls~~df~~ll~~~P~ 544 (648)
|+ . .+..+++|++||+.+++ .+. ++.++++|++ +|+++.|++++|.++++++|+
T Consensus 91 -g~--~--il~~l~~Gd~fGe~al~---~~~------~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~ 145 (694)
T 3cf6_E 91 -GK--G--VVCTLHEGDDFGKLALV---NDA------PRAASIVLREDNCHFLRVDKEDFNRILRDVEA 145 (694)
T ss_dssp -TT--E--EEEEEETTCEECHHHHH---HTC------BCSSEEEECSSSEEEEEEEHHHHHHHTTTTCC
T ss_pred -CC--E--EEEEeCCCCEeehHHHh---CCC------CceEEEEEeeCceEEEEEeHHHHHHHHHHCHH
Confidence 32 2 37999999999998875 211 3789999999 599999999999999999973
No 59
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.29 E-value=2e-11 Score=107.08 Aligned_cols=61 Identities=13% Similarity=0.171 Sum_probs=52.9
Q ss_pred HHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH
Q 006374 295 FIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLE 355 (648)
Q Consensus 295 Yi~slYwa~~TmttvGyGdi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~ii~~~~~~~~ 355 (648)
|..|+||+++|+|||||||++|.|..+++++++.+++|..++++.++.+++.++..+...+
T Consensus 50 ~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~ 110 (114)
T 2q67_A 50 PIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSN 110 (114)
T ss_dssp HHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999999865554433
No 60
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.25 E-value=1.7e-12 Score=111.98 Aligned_cols=58 Identities=16% Similarity=0.232 Sum_probs=53.9
Q ss_pred HHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 006374 294 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGT 351 (648)
Q Consensus 294 ~Yi~slYwa~~TmttvGyGdi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~ii~~~~ 351 (648)
.|..|+||++.|+|||||||++|.+..+++++++.+++|.+++++.+|.+++.+.+..
T Consensus 40 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~ 97 (103)
T 2k1e_A 40 SYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRRE 97 (103)
T ss_dssp CGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHH
T ss_pred cHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999998876543
No 61
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.18 E-value=1.4e-10 Score=139.27 Aligned_cols=115 Identities=12% Similarity=0.183 Sum_probs=99.4
Q ss_pred HHHHHHHhcCCcccccCCHHHHHHHHhcCeeEE-ecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCC
Q 006374 414 SELCLEVLKKVPMFQMMGKSILSEMCKCLKPVL-YVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTG 492 (648)
Q Consensus 414 ~~~~~~~L~~i~~F~~ls~~~l~~L~~~l~~~~-~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G 492 (648)
.+...+.+.+++.|.++++..+..++..+.... ++.|++|+++||.++.+|||.+|.|+++...++. +..+++|
T Consensus 332 ~e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~~~~-----v~~L~~G 406 (999)
T 4f7z_A 332 LEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGV-----VCTLHEG 406 (999)
T ss_dssp HHHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETTTEE-----EEEEETT
T ss_pred HHHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcCCcc-----eEEecCC
Confidence 344567899999999999999999999999765 5779999999999999999999999998744332 6889999
Q ss_pred CeEechhhhccCCCCCCCCCCCcceEEEEece-EEEEEEeHHHHHHHHHhc
Q 006374 493 DFWGEELATSALDPDPLSNIPHSNCALISVTN-VEAFAINTDDLRAIVYQY 542 (648)
Q Consensus 493 ~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~-~~ll~Ls~~df~~ll~~~ 542 (648)
|+|||.+++ .+. |+.+||+|.++ |++++++++||.+++.+-
T Consensus 407 d~FGElALL---~~~------PR~aTV~a~~d~c~fl~i~k~df~~il~~~ 448 (999)
T 4f7z_A 407 DDFGKLALV---NDA------PRAASIVLREDNCHFLRVDKEDGNRILRDV 448 (999)
T ss_dssp CEECGGGGT---CSC------BCSSEEEESSSSEEEEEEEHHHHHHHHHHH
T ss_pred Ccccchhhc---cCC------CeeEEEEEecCceEEEEeeHHHHHHHHhHH
Confidence 999999984 333 48999999985 999999999999999774
No 62
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.16 E-value=1.1e-10 Score=99.33 Aligned_cols=54 Identities=13% Similarity=0.187 Sum_probs=51.7
Q ss_pred HHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006374 295 FIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQ 348 (648)
Q Consensus 295 Yi~slYwa~~TmttvGyGdi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~ii~ 348 (648)
|..|+||+++|+|||||||++|.+..+++++++.+++|..++++.++.++..++
T Consensus 33 ~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~ 86 (97)
T 3ouf_A 33 PIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQ 86 (97)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678999999999999999999999999999999999999999999999998775
No 63
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.11 E-value=8.9e-11 Score=96.60 Aligned_cols=54 Identities=11% Similarity=0.218 Sum_probs=51.3
Q ss_pred HHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006374 294 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYL 347 (648)
Q Consensus 294 ~Yi~slYwa~~TmttvGyGdi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~ii 347 (648)
.|..|+||++.|+|||||||++|.|..+++++++.+++|..++++.++.+++.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999999999999999999875
No 64
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.08 E-value=5.7e-12 Score=118.48 Aligned_cols=62 Identities=15% Similarity=0.237 Sum_probs=56.3
Q ss_pred HHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH
Q 006374 294 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLE 355 (648)
Q Consensus 294 ~Yi~slYwa~~TmttvGyGdi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~ii~~~~~~~~ 355 (648)
.|..|+||+++|+|||||||++|.|..+++++++.+++|++++++++|.+++.+.+...+..
T Consensus 67 ~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~~ 128 (166)
T 3pjs_K 67 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQQ 128 (166)
T ss_dssp STTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHHHH
T ss_pred CHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999998876654433
No 65
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.02 E-value=3.2e-10 Score=116.31 Aligned_cols=62 Identities=13% Similarity=0.024 Sum_probs=48.6
Q ss_pred HHHHHHHHHhhhhcccccccc-Ccc-cCchhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 006374 292 KKKFIYCFRWGLQTVSCAGQN-LQT-STHEGE----NLLASFIIIASLLLLLLVLGNLTIYLQSGTIK 353 (648)
Q Consensus 292 ~~~Yi~slYwa~~TmttvGyG-di~-p~~~~E----~i~~i~~~i~G~~~fa~iig~i~~ii~~~~~~ 353 (648)
+..+..|+||+++|+||+||| |+. |.+... ..+++++++.|.++.+..+|.+.+-+.....+
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~~ 245 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQK 245 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556779999999999999999 985 766544 78889999999999999999998877655443
No 66
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.95 E-value=1.5e-09 Score=111.47 Aligned_cols=57 Identities=16% Similarity=0.160 Sum_probs=53.1
Q ss_pred HHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 006374 294 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSG 350 (648)
Q Consensus 294 ~Yi~slYwa~~TmttvGyGdi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~ii~~~ 350 (648)
.|..|+|||+.|||||||||++|.+...++++++.+++|.+++|+++|.+.+.+...
T Consensus 82 s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~ 138 (301)
T 1xl4_A 82 SFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRP 138 (301)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 478999999999999999999999999999999999999999999999988877543
No 67
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.90 E-value=1.1e-09 Score=113.44 Aligned_cols=59 Identities=14% Similarity=0.153 Sum_probs=54.6
Q ss_pred HHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 006374 294 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTI 352 (648)
Q Consensus 294 ~Yi~slYwa~~TmttvGyGdi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~ii~~~~~ 352 (648)
.|..|+||++.|||||||||++|.+..+++++++.+++|++++|+++|.+.+.+.....
T Consensus 96 s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~~ 154 (333)
T 1p7b_A 96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPRA 154 (333)
T ss_dssp STHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred cHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36799999999999999999999999999999999999999999999999988876543
No 68
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.84 E-value=5.7e-09 Score=106.68 Aligned_cols=56 Identities=14% Similarity=0.178 Sum_probs=53.9
Q ss_pred HHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006374 294 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQS 349 (648)
Q Consensus 294 ~Yi~slYwa~~TmttvGyGdi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~ii~~ 349 (648)
.|..|+||+++|||||||||++|.|...++++++.+++|..+++++++.+++.+..
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~ 170 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGS 170 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999998864
No 69
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.72 E-value=1.3e-08 Score=105.23 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=54.7
Q ss_pred HHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 006374 294 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTI 352 (648)
Q Consensus 294 ~Yi~slYwa~~TmttvGyGdi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~ii~~~~~ 352 (648)
.|..|+|||+.|||||||||+.|.+...++++++.+++|.+++|+++|.+.+.+.....
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~~ 136 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPKK 136 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47789999999999999999999999999999999999999999999999988876543
No 70
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.62 E-value=1.3e-07 Score=97.77 Aligned_cols=58 Identities=12% Similarity=0.220 Sum_probs=51.2
Q ss_pred HHHHHHHhhhhccccccccCcccC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 006374 294 KFIYCFRWGLQTVSCAGQNLQTST--HEGENLLASFIIIASLLLLLLVLGNLTIYLQSGT 351 (648)
Q Consensus 294 ~Yi~slYwa~~TmttvGyGdi~p~--~~~E~i~~i~~~i~G~~~fa~iig~i~~ii~~~~ 351 (648)
.+..++|||+.|+|||||||+.|. +..-++++++.+++|.++.|+.+|.+.+-++.-.
T Consensus 91 sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~ 150 (340)
T 3sya_A 91 GFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPK 150 (340)
T ss_dssp STTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred CHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 355799999999999999999996 6789999999999999999999998887766544
No 71
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.56 E-value=1.1e-07 Score=106.91 Aligned_cols=53 Identities=17% Similarity=0.336 Sum_probs=48.7
Q ss_pred HHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 006374 295 FIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGN-LTIYL 347 (648)
Q Consensus 295 Yi~slYwa~~TmttvGyGdi~p~~~~E~i~~i~~~i~G~~~fa~iig~-i~~ii 347 (648)
|..|+||+++|||||||||++|.|..+++++++++++|++++++.++. +.+.+
T Consensus 52 ~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 105 (565)
T 4gx0_A 52 FMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMF 105 (565)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999998 44443
No 72
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.55 E-value=2.9e-08 Score=101.41 Aligned_cols=60 Identities=15% Similarity=0.156 Sum_probs=54.5
Q ss_pred HHHHHHHhhhhccccccccCcccCchhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 006374 294 KFIYCFRWGLQTVSCAGQNLQTSTHEGEN------LLASFIIIASLLLLLLVLGNLTIYLQSGTIK 353 (648)
Q Consensus 294 ~Yi~slYwa~~TmttvGyGdi~p~~~~E~------i~~i~~~i~G~~~fa~iig~i~~ii~~~~~~ 353 (648)
.|+.|+||++.|+|||||||++|.+..++ +++++++++|+.+++++++.+++.+.....+
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~r 289 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSRR 289 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTT
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37789999999999999999999998887 5999999999999999999999988877644
No 73
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.54 E-value=8.4e-08 Score=96.57 Aligned_cols=55 Identities=13% Similarity=0.217 Sum_probs=52.1
Q ss_pred HHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006374 294 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQ 348 (648)
Q Consensus 294 ~Yi~slYwa~~TmttvGyGdi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~ii~ 348 (648)
.|..|+||+++|+|||||||++|.|+..++++++.+++|+.+++++++.++..+.
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~ 147 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRIT 147 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999999999999986554
No 74
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.48 E-value=4.3e-07 Score=94.06 Aligned_cols=58 Identities=10% Similarity=0.210 Sum_probs=51.6
Q ss_pred HHHHHHHhhhhccccccccCccc--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 006374 294 KFIYCFRWGLQTVSCAGQNLQTS--THEGENLLASFIIIASLLLLLLVLGNLTIYLQSGT 351 (648)
Q Consensus 294 ~Yi~slYwa~~TmttvGyGdi~p--~~~~E~i~~i~~~i~G~~~fa~iig~i~~ii~~~~ 351 (648)
.+..++|||+.|+|||||||+.| .+...++++++.+++|.++.|..+|-+.+-++.-.
T Consensus 94 sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~ 153 (343)
T 3spc_A 94 GFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPK 153 (343)
T ss_dssp SHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred CHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 46789999999999999999986 48899999999999999999999998887776544
No 75
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.40 E-value=1e-07 Score=95.99 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=50.0
Q ss_pred HHHHHHhhhhccccccccCcccCchh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006374 295 FIYCFRWGLQTVSCAGQNLQTSTHEG-------ENLLASFIIIASLLLLLLVLGNLTIYLQ 348 (648)
Q Consensus 295 Yi~slYwa~~TmttvGyGdi~p~~~~-------E~i~~i~~~i~G~~~fa~iig~i~~ii~ 348 (648)
|+.|+||++.|+|||||||++|.+.. -++++++.+++|.++++++++.+++++.
T Consensus 202 ~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~ 262 (280)
T 3ukm_A 202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHE 262 (280)
T ss_dssp HHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHH
T ss_pred hhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999885 4999999999999999999999988665
No 76
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.28 E-value=3.8e-08 Score=103.19 Aligned_cols=56 Identities=11% Similarity=0.202 Sum_probs=50.1
Q ss_pred HHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 006374 295 FIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSG 350 (648)
Q Consensus 295 Yi~slYwa~~TmttvGyGdi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~ii~~~ 350 (648)
|..|+||++.|+|||||||++|.|..+++++++++++|.++++++++.+++.+.+.
T Consensus 46 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (336)
T 1lnq_A 46 WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINR 101 (336)
T ss_dssp SSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC---
T ss_pred HHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34699999999999999999999999999999999999999999999998877643
No 77
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=97.74 E-value=0.00012 Score=71.88 Aligned_cols=57 Identities=19% Similarity=0.072 Sum_probs=34.5
Q ss_pred HHHHHHHHhhhhccccccccCccc----CchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006374 293 KKFIYCFRWGLQTVSCAGQNLQTS----THEGENL-LASFIIIASLLLLLLVLGNLTIYLQS 349 (648)
Q Consensus 293 ~~Yi~slYwa~~TmttvGyGdi~p----~~~~E~i-~~i~~~i~G~~~fa~iig~i~~ii~~ 349 (648)
+....|++|.+.++|+.|++|+.. .+..-.+ |..++.+.+.++....+|-+.+-.++
T Consensus 164 ~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfiavi~~~f~~ 225 (229)
T 4dxw_A 164 GDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAILVDVVIQ 225 (229)
T ss_dssp SSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999999999621 1112223 33344444455556666666554443
No 78
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=95.58 E-value=0.0063 Score=55.21 Aligned_cols=76 Identities=12% Similarity=0.067 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHhhcceeEEEEEEcCCcceeeecccceeehhhhHHHHHHhhhh-hcCCccccChhHhhhhhhhhHHhH
Q 006374 53 WNWIWLAVRIISTSLDPLFFYIFVVNDHKKCVDLDIKLAIIAISLRTIFDFFNII-YSSSTPHKHSRANAKKCFYLNSFL 131 (648)
Q Consensus 53 Wd~~~~~~~l~~~~~~Pl~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~D~~f~~-f~~~~~v~d~~~Ia~~~~Ylk~F~ 131 (648)
||.++.++++.+++++-+..+. ..+......+..+|.++=++|.+ +-- +.+..++ .+ +|+++-+
T Consensus 23 f~~~i~~lil~sv~~v~~et~~----------~i~~~~~~~~~~id~~~~~iF~~Ey~l-Rl~~a~~--k~--~f~~~~i 87 (147)
T 2kyh_A 23 VELGVSYAALLSVIVVVVEYTM----------QLSGEYLVRLYLVDLILVIILWADYAY-RAYKSGD--PA--GYVKKTL 87 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC----------CCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTC--HH--HHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHHHhH----------hhchhHHHHHHHHHHHHHHHHHHHHHH-HHHHCCc--HH--HHHHHHH
Confidence 7878777777776654433110 01111122456677777777777 210 0000111 23 7888877
Q ss_pred HHhhhcCCccch
Q 006374 132 KDLLSCLPIPQL 143 (648)
Q Consensus 132 iDlls~lP~~~i 143 (648)
+|++|++|+...
T Consensus 88 iDllailP~~~~ 99 (147)
T 2kyh_A 88 YEIPALVPAGLL 99 (147)
T ss_dssp TTHHHHCCHHHH
T ss_pred HHHHHHHHHHHH
Confidence 899999998643
No 79
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=93.38 E-value=0.04 Score=48.88 Aligned_cols=76 Identities=12% Similarity=0.065 Sum_probs=41.6
Q ss_pred CcchHHHHHHHHHHHHhhcceeEEEEEEcCCcceeeecccceeehhhhHHHHHHhhhh---hcCCccccChhHhhhhhhh
Q 006374 50 GPFWNWIWLAVRIISTSLDPLFFYIFVVNDHKKCVDLDIKLAIIAISLRTIFDFFNII---YSSSTPHKHSRANAKKCFY 126 (648)
Q Consensus 50 s~~Wd~~~~~~~l~~~~~~Pl~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~D~~f~~---f~~~~~v~d~~~Ia~~~~Y 126 (648)
++.+|.+++++++.+++..-+..+ + ..+......+..+|+++-.+|.+ .+ .+.-++ .+ +|
T Consensus 5 ~~~f~~~i~~lIlls~~~~~~et~-----~-----~~~~~~~~~l~~~d~~~~~iFt~E~~lR---l~~~~~--~~--~y 67 (132)
T 1ors_C 5 HPLVELGVSYAALLSVIVVVVEYT-----M-----QLSGEYLVRLYLVDLILVIILWADYAYR---AYKSGD--PA--GY 67 (132)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH-----S-----CCCSHHHHHHHHHHHHHHHHHHHHHHHH---HHHTTS--TT--TT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhc-----h-----hhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCC--HH--HH
Confidence 344677777777777665433211 0 01111123455667777777776 22 000010 23 77
Q ss_pred hHHhHHHhhhcCCccc
Q 006374 127 LNSFLKDLLSCLPIPQ 142 (648)
Q Consensus 127 lk~F~iDlls~lP~~~ 142 (648)
++.-++|+++++|+..
T Consensus 68 ~~~niiDllailp~~~ 83 (132)
T 1ors_C 68 VKKTLYEIPALVPAGL 83 (132)
T ss_dssp TTTCGGGTGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7765789999999864
No 80
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=71.80 E-value=21 Score=29.76 Aligned_cols=67 Identities=10% Similarity=0.057 Sum_probs=46.9
Q ss_pred CeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEechhhhccCCCCCCCCCCCcceEEEE
Q 006374 442 LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALIS 521 (648)
Q Consensus 442 l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A 521 (648)
+....++||..+-.--...+++++|++|.+++... ++ ...+.+||.+---+ ...-.+++
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~i~ip~--------------~~~H~~~~ 96 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGVD--GA-----QRRLHQGDLLYLGA--------------GAAHDVNA 96 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEET--TE-----EEEECTTEEEEECT--------------TCCEEEEE
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEEC--CE-----EEEECCCCEEEECC--------------CCcEEEEe
Confidence 44566888888766556667999999999998763 33 36788999875332 12346778
Q ss_pred eceEEEEE
Q 006374 522 VTNVEAFA 529 (648)
Q Consensus 522 ~~~~~ll~ 529 (648)
.+++.++.
T Consensus 97 ~~~~~~~~ 104 (114)
T 3fjs_A 97 ITNTSLLV 104 (114)
T ss_dssp SSSEEEEE
T ss_pred CCCcEEEE
Confidence 88877654
No 81
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=69.51 E-value=25 Score=28.98 Aligned_cols=66 Identities=15% Similarity=0.089 Sum_probs=42.9
Q ss_pred eEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEechhhhccCCCCCCCCCCCcceEEEEec
Q 006374 444 PVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVT 523 (648)
Q Consensus 444 ~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~ 523 (648)
...+.+|..+-.-.....++++|++|.+.+.. +++ ...+.+||.+=-.+ + ....+.+.+
T Consensus 42 ~~~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i--~~~-----~~~l~~Gd~i~i~~-----------~---~~H~~~~~~ 100 (114)
T 2ozj_A 42 LFSFADGESVSEEEYFGDTLYLILQGEAVITF--DDQ-----KIDLVPEDVLMVPA-----------H---KIHAIAGKG 100 (114)
T ss_dssp EEEEETTSSCCCBCCSSCEEEEEEEEEEEEEE--TTE-----EEEECTTCEEEECT-----------T---CCBEEEEEE
T ss_pred EEEECCCCccccEECCCCeEEEEEeCEEEEEE--CCE-----EEEecCCCEEEECC-----------C---CcEEEEeCC
Confidence 34466776654444556789999999999876 233 36788999874322 1 223556667
Q ss_pred eEEEEEE
Q 006374 524 NVEAFAI 530 (648)
Q Consensus 524 ~~~ll~L 530 (648)
++.++.+
T Consensus 101 ~~~~~~i 107 (114)
T 2ozj_A 101 RFKMLQI 107 (114)
T ss_dssp EEEEEEE
T ss_pred CcEEEEE
Confidence 7777654
No 82
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=69.35 E-value=16 Score=34.78 Aligned_cols=69 Identities=17% Similarity=0.173 Sum_probs=53.1
Q ss_pred cCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEechhhhccCCCCCCCCCCCcceEEE
Q 006374 441 CLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALI 520 (648)
Q Consensus 441 ~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~ 520 (648)
.+....+.||+.+-..-.+.+.+.+|++|.+++... ++ ...+.+||++=-.+ .....++
T Consensus 38 ~~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~~~~p~--------------~~~H~~~ 96 (227)
T 3rns_A 38 YISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIE--NN-----KKTISNGDFLEITA--------------NHNYSIE 96 (227)
T ss_dssp EEEEEEECTTCEEEECSCSSCEEEEEEESEEEEEES--SC-----EEEEETTEEEEECS--------------SCCEEEE
T ss_pred EEEEEEECCCCccCccccCCCEEEEEEeCEEEEEEC--CE-----EEEECCCCEEEECC--------------CCCEEEE
Confidence 445667899999988778899999999999999873 33 26778998864322 1356888
Q ss_pred EeceEEEEEE
Q 006374 521 SVTNVEAFAI 530 (648)
Q Consensus 521 A~~~~~ll~L 530 (648)
|.+++.++.+
T Consensus 97 a~~~~~~l~i 106 (227)
T 3rns_A 97 ARDNLKLIEI 106 (227)
T ss_dssp ESSSEEEEEE
T ss_pred ECCCcEEEEE
Confidence 9999999977
No 83
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=64.12 E-value=46 Score=27.26 Aligned_cols=68 Identities=12% Similarity=0.116 Sum_probs=45.4
Q ss_pred CeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEechhhhccCCCCCCCCCCCcceEEEE
Q 006374 442 LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALIS 521 (648)
Q Consensus 442 l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A 521 (648)
+....+.||...-.--....++++|++|.+.+.. +++ ...+.+|+.+=.-+ ...-.+.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~ip~--------------~~~H~~~~ 94 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV--DGV-----IKVLTAGDSFFVPP--------------HVDHGAVC 94 (116)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEEECEEEEE--TTE-----EEEECTTCEEEECT--------------TCCEEEEE
T ss_pred EEEEEECCCCcCCcEECCcceEEEEEeeEEEEEE--CCE-----EEEeCCCCEEEECc--------------CCceeeEe
Confidence 4456678888754333346789999999999876 333 36788999864322 02345677
Q ss_pred eceEEEEEE
Q 006374 522 VTNVEAFAI 530 (648)
Q Consensus 522 ~~~~~ll~L 530 (648)
.+++.++.+
T Consensus 95 ~~~~~~l~v 103 (116)
T 2pfw_A 95 PTGGILIDT 103 (116)
T ss_dssp SSCEEEEEE
T ss_pred CCCcEEEEE
Confidence 778877766
No 84
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=63.33 E-value=52 Score=27.74 Aligned_cols=46 Identities=13% Similarity=0.179 Sum_probs=33.9
Q ss_pred eEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEec
Q 006374 444 PVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 497 (648)
Q Consensus 444 ~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe 497 (648)
...+.||..+-.. ...+++++|++|.+++.. +++ ...+++||.+--
T Consensus 44 ~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~--~g~-----~~~l~~GD~v~i 89 (119)
T 3lwc_A 44 YGRYAPGQSLTET-MAVDDVMIVLEGRLSVST--DGE-----TVTAGPGEIVYM 89 (119)
T ss_dssp EEEECTTCEEEEE-CSSEEEEEEEEEEEEEEE--TTE-----EEEECTTCEEEE
T ss_pred EEEECCCCCcCcc-CCCCEEEEEEeCEEEEEE--CCE-----EEEECCCCEEEE
Confidence 4557788765433 377899999999999987 344 367899998753
No 85
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=61.39 E-value=46 Score=27.18 Aligned_cols=68 Identities=15% Similarity=0.042 Sum_probs=44.6
Q ss_pred CeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEechhhhccCCCCCCCCCCCcceEEEE
Q 006374 442 LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALIS 521 (648)
Q Consensus 442 l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A 521 (648)
+....+.||..+-.--....++++|++|.+.+... ++ ...+.+|+.+-.-. .....+.+
T Consensus 42 ~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~~--~~-----~~~l~~Gd~~~ip~--------------~~~H~~~~ 100 (115)
T 1yhf_A 42 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITID--QE-----TYRVAEGQTIVMPA--------------GIPHALYA 100 (115)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEET--TE-----EEEEETTCEEEECT--------------TSCEEEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeCEEEEEEC--CE-----EEEECCCCEEEECC--------------CCCEEEEE
Confidence 34556788877644334467899999999998762 33 26788999874322 12345677
Q ss_pred eceEEEEEE
Q 006374 522 VTNVEAFAI 530 (648)
Q Consensus 522 ~~~~~ll~L 530 (648)
.++++++.+
T Consensus 101 ~~~~~~~~v 109 (115)
T 1yhf_A 101 VEAFQMLLV 109 (115)
T ss_dssp SSCEEEEEE
T ss_pred CCCceEEEE
Confidence 777777654
No 86
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=59.29 E-value=12 Score=42.98 Aligned_cols=55 Identities=11% Similarity=0.165 Sum_probs=44.9
Q ss_pred HHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006374 294 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQS 349 (648)
Q Consensus 294 ~Yi~slYwa~~TmttvGyGdi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~ii~~ 349 (648)
....++|+++.++++.| ++..|.+...+++.+++++++.++.+.--+++++.+..
T Consensus 563 ~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45578999999999888 68899999999999999999999999999999999873
No 87
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=50.47 E-value=22 Score=32.51 Aligned_cols=60 Identities=17% Similarity=0.230 Sum_probs=40.8
Q ss_pred CcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEechhhhccCCCCCCCCCCCcceEEEEec-eEEEEEEeHHHH
Q 006374 459 PICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVT-NVEAFAINTDDL 535 (648)
Q Consensus 459 ~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~-~~~ll~Ls~~df 535 (648)
+.++++++++|.+.+...++|+.. -..+.+||+|=--. + -.-+-++.+ +|..+.+.+..-
T Consensus 54 ~~dE~FyvlkG~m~i~v~d~g~~~---~v~l~eGE~f~lP~-----------g---vpH~P~r~~~e~~~lviE~~r~ 114 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWVDGRRE---RADLKEGDIFLLPP-----------H---VRHSPQRPEAGSACLVIERQRP 114 (174)
T ss_dssp SSCEEEEEEESCEEEEEEETTEEE---EEEECTTCEEEECT-----------T---CCEEEEBCCTTCEEEEEEECCC
T ss_pred CCceEEEEEeeEEEEEEEcCCcee---eEEECCCCEEEeCC-----------C---CCcCccccCCCCEEEEEEeCCC
Confidence 467999999999999987755322 37889999984322 1 122444566 788887766543
No 88
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=49.51 E-value=71 Score=26.54 Aligned_cols=49 Identities=18% Similarity=0.108 Sum_probs=35.3
Q ss_pred cCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEe
Q 006374 441 CLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 496 (648)
Q Consensus 441 ~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 496 (648)
.+....+.||..+-.--....++++|++|.+.+... ++ ...+.+|+.+-
T Consensus 42 ~~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~--~~-----~~~l~~Gd~~~ 90 (126)
T 4e2g_A 42 MLNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTIG--EE-----TRVLRPGMAYT 90 (126)
T ss_dssp EEEEEEECTTCEEEEECCSSEEEEEEEEECEEEEET--TE-----EEEECTTEEEE
T ss_pred EEEEEEECCCCcCCCccCCCceEEEEEEeEEEEEEC--CE-----EEEeCCCCEEE
Confidence 344566888887654444567899999999998772 33 36788998864
No 89
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=46.89 E-value=1.2e+02 Score=24.73 Aligned_cols=48 Identities=19% Similarity=0.078 Sum_probs=34.9
Q ss_pred cCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEe
Q 006374 441 CLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 496 (648)
Q Consensus 441 ~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 496 (648)
.+-...+.||+.-.. ....++++|++|.+.+...+ ++ ...+.+||.+-
T Consensus 32 ~~~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i~~-g~-----~~~l~~GD~i~ 79 (101)
T 1o5u_A 32 KWPIWEKEVSEFDWY--YDTNETCYILEGKVEVTTED-GK-----KYVIEKGDLVT 79 (101)
T ss_dssp GSCEEEECSEEEEEE--CSSCEEEEEEEEEEEEEETT-CC-----EEEEETTCEEE
T ss_pred EEEEEEeCCCccccc--CCceEEEEEEeCEEEEEECC-CC-----EEEECCCCEEE
Confidence 344567788876554 44689999999999988732 33 36788999875
No 90
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=46.82 E-value=26 Score=32.03 Aligned_cols=53 Identities=9% Similarity=0.041 Sum_probs=37.0
Q ss_pred CeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEec
Q 006374 442 LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 497 (648)
Q Consensus 442 l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe 497 (648)
+....+.||.....--..++++++|++|.+++...+.+... ...+.+||.+--
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~---~~~l~~GDv~~~ 95 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD---TYKLDQGDAIKI 95 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEE---EEEEETTEEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcE---EEEECCCCEEEE
Confidence 45567889987654434468999999999998764332221 468899998753
No 91
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=46.22 E-value=27 Score=29.32 Aligned_cols=50 Identities=16% Similarity=0.030 Sum_probs=33.8
Q ss_pred cCeeEEecCCeEEEccCCC-cCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEe
Q 006374 441 CLKPVLYVQECCIVKEGDP-ICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 496 (648)
Q Consensus 441 ~l~~~~~~kge~I~~eGd~-~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 496 (648)
.+....++||..+-.--.. ..++++|++|.+.+...+ ++ ...+++||.+-
T Consensus 40 ~~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~-~~-----~~~l~~Gd~~~ 90 (125)
T 3h8u_A 40 VVVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQGN-GI-----VTHLKAGDIAI 90 (125)
T ss_dssp EEEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECST-TC-----EEEEETTEEEE
T ss_pred EEEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEECC-Ce-----EEEeCCCCEEE
Confidence 3445668888876544344 368999999999986533 33 36778998764
No 92
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=44.94 E-value=63 Score=29.52 Aligned_cols=50 Identities=16% Similarity=0.102 Sum_probs=33.5
Q ss_pred eEEecCCeEEEc---cCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEe
Q 006374 444 PVLYVQECCIVK---EGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 496 (648)
Q Consensus 444 ~~~~~kge~I~~---eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 496 (648)
...++||...-. -.....++++|++|.+++...+++... ...+.+||.+-
T Consensus 121 ~~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~~---~~~l~~GD~~~ 173 (198)
T 2bnm_A 121 VVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPK---EALLPTGASMF 173 (198)
T ss_dssp EEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCE---EEEECTTCEEE
T ss_pred EEEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCcc---cEEECCCCEEE
Confidence 345778775432 233457899999999999874422211 47899999874
No 93
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=43.99 E-value=76 Score=29.99 Aligned_cols=69 Identities=10% Similarity=0.037 Sum_probs=48.1
Q ss_pred cCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEechhhhccCCCCCCCCCCCcceEEE
Q 006374 441 CLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALI 520 (648)
Q Consensus 441 ~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~ 520 (648)
.+....++||+.+-..-.+.+++++|++|.+++... ++ ...+.+||.+=--+- ....+.
T Consensus 154 ~~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~--g~-----~~~l~~Gd~i~ip~~--------------~~H~~~ 212 (227)
T 3rns_A 154 VMTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYVD--GK-----PFIVKKGESAVLPAN--------------IPHAVE 212 (227)
T ss_dssp EEEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEET--TE-----EEEEETTEEEEECTT--------------SCEEEE
T ss_pred EEEEEEECCCCccCCEECCCcEEEEEEeEEEEEEEC--CE-----EEEECCCCEEEECCC--------------CcEEEE
Confidence 345677899998765555677899999999998763 33 367889998743221 234677
Q ss_pred E-eceEEEEEE
Q 006374 521 S-VTNVEAFAI 530 (648)
Q Consensus 521 A-~~~~~ll~L 530 (648)
+ .++++++.+
T Consensus 213 ~~~~~~~~ll~ 223 (227)
T 3rns_A 213 AETENFKMLLI 223 (227)
T ss_dssp CCSSCEEEEEE
T ss_pred eCCCCEEEEEE
Confidence 7 788877653
No 94
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=43.48 E-value=92 Score=24.88 Aligned_cols=68 Identities=9% Similarity=0.070 Sum_probs=41.2
Q ss_pred eeEEecCCeEEEccCCCc-CeE-EEEEeeeEEEEEecCCeeeeEEEEecCCCCeEechhhhccCCCCCCCCCCCcceEEE
Q 006374 443 KPVLYVQECCIVKEGDPI-CEM-FFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALI 520 (648)
Q Consensus 443 ~~~~~~kge~I~~eGd~~-~~l-yfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~ 520 (648)
....+.+|..+-.--... .++ ++|++|.+.+...++ + ...+.+||.+-.-+- ....+.
T Consensus 36 ~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~~-~-----~~~l~~Gd~~~ip~~--------------~~H~~~ 95 (110)
T 2q30_A 36 VSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGDGD-A-----VIPAPRGAVLVAPIS--------------TPHGVR 95 (110)
T ss_dssp EEEEECTTCEEEEECCSSSCEEEEEEEESCEEEECGGG-C-----EEEECTTEEEEEETT--------------SCEEEE
T ss_pred EEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeCCC-E-----EEEECCCCEEEeCCC--------------CcEEEE
Confidence 344577887664332232 466 899999999876322 3 367889987643221 234566
Q ss_pred EeceEEEEEE
Q 006374 521 SVTNVEAFAI 530 (648)
Q Consensus 521 A~~~~~ll~L 530 (648)
+.+++.++.+
T Consensus 96 ~~~~~~~l~~ 105 (110)
T 2q30_A 96 AVTDMKVLVT 105 (110)
T ss_dssp ESSSEEEEEE
T ss_pred EcCCcEEEEE
Confidence 6777765543
No 95
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=42.84 E-value=29 Score=28.25 Aligned_cols=68 Identities=10% Similarity=0.030 Sum_probs=41.2
Q ss_pred ecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEechhhhccCCCCCCCCCCCcceEEEEeceEE
Q 006374 447 YVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVE 526 (648)
Q Consensus 447 ~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ 526 (648)
..+|+......+...++++|++|.+.+...+ ++ ...+.+||.+---+ + ..-.+.+.+++.
T Consensus 35 ~~~g~~~~H~H~~~~E~~~Vl~G~~~~~~~~-~~-----~~~l~~Gd~~~ip~-----------~---~~H~~~~~~~~~ 94 (107)
T 2i45_A 35 KLLGDYGWHTHGYSDKVLFAVEGDMAVDFAD-GG-----SMTIREGEMAVVPK-----------S---VSHRPRSENGCS 94 (107)
T ss_dssp EEEEECCCBCC--CCEEEEESSSCEEEEETT-SC-----EEEECTTEEEEECT-----------T---CCEEEEEEEEEE
T ss_pred ECCCCCcceeCCCCCEEEEEEeCEEEEEECC-Cc-----EEEECCCCEEEECC-----------C---CcEeeEeCCCeE
Confidence 4456543333333379999999999987743 13 36788999874322 1 123445557788
Q ss_pred EEEEeHHH
Q 006374 527 AFAINTDD 534 (648)
Q Consensus 527 ll~Ls~~d 534 (648)
++.++...
T Consensus 95 ~l~i~~~~ 102 (107)
T 2i45_A 95 LVLIELSD 102 (107)
T ss_dssp EEEEECC-
T ss_pred EEEEECCC
Confidence 88876544
No 96
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=42.00 E-value=53 Score=26.47 Aligned_cols=48 Identities=10% Similarity=0.100 Sum_probs=33.8
Q ss_pred CeeEEecCCeEEEcc--CCC-cCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEe
Q 006374 442 LKPVLYVQECCIVKE--GDP-ICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 496 (648)
Q Consensus 442 l~~~~~~kge~I~~e--Gd~-~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 496 (648)
+....+.||..+-.. -.. ..++++|++|.+.+... ++ ...+.+||.+-
T Consensus 23 ~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~~--~~-----~~~l~~Gd~~~ 73 (113)
T 2gu9_A 23 AAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIVD--GH-----TQALQAGSLIA 73 (113)
T ss_dssp EEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEET--TE-----EEEECTTEEEE
T ss_pred EEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEEC--CE-----EEEeCCCCEEE
Confidence 344567888876543 333 67899999999998763 33 36788998774
No 97
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=41.55 E-value=23 Score=30.36 Aligned_cols=46 Identities=13% Similarity=0.073 Sum_probs=31.9
Q ss_pred EEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEec
Q 006374 445 VLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 497 (648)
Q Consensus 445 ~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe 497 (648)
-...||..-....+ .+++++|++|.+.+...+ |+ ...+++||.+--
T Consensus 54 w~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~~~-g~-----~~~l~~GD~~~i 99 (123)
T 3bcw_A 54 WESTSGSFQSNTTG-YIEYCHIIEGEARLVDPD-GT-----VHAVKAGDAFIM 99 (123)
T ss_dssp EEEEEEEEECCCTT-EEEEEEEEEEEEEEECTT-CC-----EEEEETTCEEEE
T ss_pred EEECCCceeeEcCC-CcEEEEEEEEEEEEEECC-Ce-----EEEECCCCEEEE
Confidence 34566766554332 379999999999988643 44 257889998853
No 98
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=40.97 E-value=62 Score=25.43 Aligned_cols=47 Identities=6% Similarity=0.010 Sum_probs=32.4
Q ss_pred eeEEecCCeEEEccCCC-cCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEe
Q 006374 443 KPVLYVQECCIVKEGDP-ICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 496 (648)
Q Consensus 443 ~~~~~~kge~I~~eGd~-~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 496 (648)
....+.||..+-.--.. .+++++|++|.+.+... ++ ...+.+||.+=
T Consensus 31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~--~~-----~~~l~~Gd~~~ 78 (105)
T 1v70_A 31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVG--EE-----EALLAPGMAAF 78 (105)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEEESCEEEEET--TE-----EEEECTTCEEE
T ss_pred EEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEEC--CE-----EEEeCCCCEEE
Confidence 44567888776433333 35799999999998763 33 36788999874
No 99
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=39.51 E-value=54 Score=28.76 Aligned_cols=62 Identities=10% Similarity=0.138 Sum_probs=42.1
Q ss_pred ccCCCcCeEEEEEeeeEEEEEecCC----eeeeEEEEecCCCCeEechhhhccCCCCCCCCCCCcceEEEEeceEEEEEE
Q 006374 455 KEGDPICEMFFITQGTLLTTTTNGG----RNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAI 530 (648)
Q Consensus 455 ~eGd~~~~lyfI~~G~v~v~~~~~~----~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~L 530 (648)
+.-+..|++|+|++|.+.+...+++ +.. ...+++|+++-.-. . -..+-.|.++|.++.+
T Consensus 45 h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~---~V~l~~Ge~yvVPk--------G------veH~p~a~~e~~vLLi 107 (140)
T 3d0j_A 45 EIHHSTDEQFILSAGKAILITAEKENDKFNIE---LTLMEKGKVYNVPA--------E------CWFYSITQKDTKMMYV 107 (140)
T ss_dssp EEESSCCEEEEEEESCEEEEEEEEETTEEEEE---EEECCTTCCEEECT--------T------CEEEEEECTTCEEEEE
T ss_pred ccCCCCCeEEEEEecEEEEEEecCcCCCCccc---eEEecCCCEEEeCC--------C------ccCcccCCCceEEEEE
Confidence 3445678999999999998875421 111 46789999885321 1 2235567788888888
Q ss_pred eHH
Q 006374 531 NTD 533 (648)
Q Consensus 531 s~~ 533 (648)
...
T Consensus 108 Ep~ 110 (140)
T 3d0j_A 108 QDS 110 (140)
T ss_dssp EES
T ss_pred EeC
Confidence 765
No 100
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=37.82 E-value=20 Score=28.82 Aligned_cols=50 Identities=16% Similarity=0.121 Sum_probs=32.3
Q ss_pred eeEEecCCeEEEccCCCc-CeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEec
Q 006374 443 KPVLYVQECCIVKEGDPI-CEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 497 (648)
Q Consensus 443 ~~~~~~kge~I~~eGd~~-~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe 497 (648)
....++||...-.--... +++++|++|.+++...++.+ ...+.+||.+-.
T Consensus 21 ~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~g~~-----~~~l~~Gd~~~~ 71 (97)
T 2fqp_A 21 TEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPEGSV-----TSQLTRGVSYTR 71 (97)
T ss_dssp EEEEECTTCBCCSEECCSCEEEEESSCEEEEEEETTEEE-----EEEECTTCCEEE
T ss_pred EEEEECCCCCCCCEECCCCcEEEEEeecEEEEEeCCCCE-----EEEEcCCCEEEe
Confidence 345677887542222233 35999999999987743212 367889998743
No 101
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=37.46 E-value=32 Score=31.38 Aligned_cols=48 Identities=10% Similarity=0.098 Sum_probs=32.8
Q ss_pred CeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeE
Q 006374 442 LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFW 495 (648)
Q Consensus 442 l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~f 495 (648)
+....++||...-.--....+..+|++|.+++...++ + ...+++||.+
T Consensus 81 ~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld~g-e-----~~~L~~GDsi 128 (172)
T 3es1_A 81 IRVVDMLPGKESPMHRTNSIDYGIVLEGEIELELDDG-A-----KRTVRQGGII 128 (172)
T ss_dssp EEEEEECTTCBCCCBCCSEEEEEEEEESCEEEECGGG-C-----EEEECTTCEE
T ss_pred EEEEEECCCCCCCCeecCceEEEEEEeCEEEEEECCC-e-----EEEECCCCEE
Confidence 4455677776433222344578899999999977433 3 3678999998
No 102
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=36.89 E-value=26 Score=29.76 Aligned_cols=45 Identities=11% Similarity=0.141 Sum_probs=32.0
Q ss_pred EecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEec
Q 006374 446 LYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 497 (648)
Q Consensus 446 ~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe 497 (648)
...||..-... +..+++++|++|.+.+...+ |+ ...+++||.+--
T Consensus 48 e~tPG~~~~~~-~~~~E~~~iLeG~~~lt~dd-G~-----~~~l~aGD~~~~ 92 (116)
T 3es4_A 48 MAEPGIYNYAG-RDLEETFVVVEGEALYSQAD-AD-----PVKIGPGSIVSI 92 (116)
T ss_dssp EECSEEEEECC-CSEEEEEEEEECCEEEEETT-CC-----CEEECTTEEEEE
T ss_pred ecCCceeECee-CCCcEEEEEEEeEEEEEeCC-Ce-----EEEECCCCEEEE
Confidence 45666665544 33458999999999998754 44 367889998864
No 103
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=36.44 E-value=36 Score=31.07 Aligned_cols=87 Identities=18% Similarity=0.250 Sum_probs=53.1
Q ss_pred HHHHHHHhcCee----EEecCCeEEEc-cC----------CCcCeEEEEEeeeEEEEEecCC---eeeeEEEEecCCCCe
Q 006374 433 SILSEMCKCLKP----VLYVQECCIVK-EG----------DPICEMFFITQGTLLTTTTNGG---RNTSVFKKYLSTGDF 494 (648)
Q Consensus 433 ~~l~~L~~~l~~----~~~~kge~I~~-eG----------d~~~~lyfI~~G~v~v~~~~~~---~~~~~~~~~l~~G~~ 494 (648)
+-+++....++| +....+++++. -| +..++++++++|.+.+...++| ++ ..-..+.+||+
T Consensus 12 ~wl~e~~~~~~PPV~Nk~v~~~~~~V~~vgGPn~r~D~H~~~~eE~Fy~lkG~m~l~v~d~g~~~~~--~~dv~i~eGdm 89 (176)
T 1zvf_A 12 KWLKENEGLLKPPVNNYCLHKGGFTVMIVGGPNERTDYHINPTPEWFYQKKGSMLLKVVDETDAEPK--FIDIIINEGDS 89 (176)
T ss_dssp HHHHHHGGGGSSSSCEEEEECSSEEEEEECSSBCCSCEEECSSCEEEEEEESCEEEEEEECSSSSCE--EEEEEECTTEE
T ss_pred HHHHHhHhhcCCCcCCEEEecCCEEEEEEcCCCcCCcCcCCCCceEEEEEeCEEEEEEEcCCCcccc--eeeEEECCCCE
Confidence 445556666666 44434555432 22 2346899999999999887644 11 11378899999
Q ss_pred EechhhhccCCCCCCCCCCCcceEEEEeceEEEEEEeHHHH
Q 006374 495 WGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDL 535 (648)
Q Consensus 495 fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df 535 (648)
|=--. +. .-+-++.+++..+.+.+..-
T Consensus 90 fllP~-----------gv---pHsP~r~~e~v~lviErkR~ 116 (176)
T 1zvf_A 90 YLLPG-----------NV---PHSPVRFADTVGIVVEQDRP 116 (176)
T ss_dssp EEECT-----------TC---CEEEEECTTCEEEEEEECCC
T ss_pred EEcCC-----------CC---CcCCcccCCcEEEEEEecCC
Confidence 84322 11 22444567888888876543
No 104
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=36.29 E-value=70 Score=31.36 Aligned_cols=70 Identities=14% Similarity=0.092 Sum_probs=45.1
Q ss_pred eeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEechhhhccCCCCCCCCCCCcceEEEEe
Q 006374 443 KPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISV 522 (648)
Q Consensus 443 ~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~ 522 (648)
-...+.||..--......+++.||++|.+.+...+ ++ ...+.+|+++=.-+ + ...+++..
T Consensus 73 ~lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l~~-g~-----~~~L~~Gds~y~p~-----------~---~~H~~~N~ 132 (266)
T 4e2q_A 73 YLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNTS-SS-----SKKLTVDSYAYLPP-----------N---FHHSLDCV 132 (266)
T ss_dssp EEEEECSSEECCCCCTTEEEEEEEEEECEEEEC---CC-----CEEECTTEEEEECT-----------T---CCCEEEES
T ss_pred EEEEECcCCcCCCCCCCCeEEEEEEEEEEEEEECC-Cc-----EEEEcCCCEEEECC-----------C---CCEEEEeC
Confidence 34567888764223344679999999999998642 33 26788999875332 1 22344556
Q ss_pred ceEEEEEEeH
Q 006374 523 TNVEAFAINT 532 (648)
Q Consensus 523 ~~~~ll~Ls~ 532 (648)
++++++.+.+
T Consensus 133 ~~Ar~l~V~k 142 (266)
T 4e2q_A 133 ESATLVVFER 142 (266)
T ss_dssp SCEEEEEEEE
T ss_pred CCEEEEEEEe
Confidence 7888888754
No 105
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=35.86 E-value=1.1e+02 Score=27.06 Aligned_cols=52 Identities=19% Similarity=0.142 Sum_probs=34.4
Q ss_pred CcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEechhhhccCCCCCCCCCCCcceEEEEeceEEEEEEe
Q 006374 459 PICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAIN 531 (648)
Q Consensus 459 ~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls 531 (648)
..+++++|++|.+++.. +|+ ...+++||.+=--+ . ......+.++|.++.+.
T Consensus 83 ~~eE~~yVLeG~~~l~i--~g~-----~~~l~~GD~i~iP~--------G------~~h~~~n~~~a~~l~V~ 134 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII--DGR-----KVSASSGELIFIPK--------G------SKIQFSVPDYARFIYVT 134 (151)
T ss_dssp SSEEEEEEEEEEEEEEE--TTE-----EEEEETTCEEEECT--------T------CEEEEEEEEEEEEEEEE
T ss_pred CCcEEEEEEEeEEEEEE--CCE-----EEEEcCCCEEEECC--------C------CEEEEEeCCCEEEEEEE
Confidence 46789999999999986 444 36788999874322 0 22344455777766653
No 106
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=35.49 E-value=90 Score=24.50 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=34.4
Q ss_pred cCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEechhhhccCCCCCCCCCCCcceEEEEeceEEEEEEe
Q 006374 460 ICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAIN 531 (648)
Q Consensus 460 ~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls 531 (648)
..++++|++|.+.+...+ + ...+.+|+.+---+ + ..-.+.+.+++.++.++
T Consensus 50 ~~e~~~v~~G~~~~~~~~--~-----~~~l~~Gd~~~ip~-----------~---~~H~~~~~~~~~~l~i~ 100 (102)
T 3d82_A 50 TDEVFIVMEGTLQIAFRD--Q-----NITLQAGEMYVIPK-----------G---VEHKPMAKEECKIMIIE 100 (102)
T ss_dssp CCEEEEEEESEEEEECSS--C-----EEEEETTEEEEECT-----------T---CCBEEEEEEEEEEEEEE
T ss_pred CcEEEEEEeCEEEEEECC--E-----EEEEcCCCEEEECC-----------C---CeEeeEcCCCCEEEEEE
Confidence 378999999999987632 2 25678998763221 1 23355666788888775
No 107
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=35.14 E-value=88 Score=32.21 Aligned_cols=79 Identities=11% Similarity=0.074 Sum_probs=58.9
Q ss_pred eeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEechhhhccCCCCCCCCCCCcceEEEEe
Q 006374 443 KPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISV 522 (648)
Q Consensus 443 ~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~ 522 (648)
....+++|+..-.--..+..+|.|.+|.-.+.. +++ ....++||.|-.-+. ...+..+.
T Consensus 282 ~~~~L~pG~~t~~hRht~s~Vy~V~eG~G~~~I--~~~-----~~~w~~gD~fvvP~w--------------~~h~~~n~ 340 (368)
T 3nw4_A 282 EFHRLRAGTETATRNEVGSTVFQVFEGAGAVVM--NGE-----TTKLEKGDMFVVPSW--------------VPWSLQAE 340 (368)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEESCEEEEE--TTE-----EEEECTTCEEEECTT--------------CCEEEEES
T ss_pred heEEECCCCccCCeeccccEEEEEEeCcEEEEE--CCE-----EEEecCCCEEEECCC--------------CcEEEEeC
Confidence 345677887765555667799999999988766 333 367889999975543 34577888
Q ss_pred ceEEEEEEeHHHHHHHHHhc
Q 006374 523 TNVEAFAINTDDLRAIVYQY 542 (648)
Q Consensus 523 ~~~~ll~Ls~~df~~ll~~~ 542 (648)
+++.++.++-.-+++-+.-+
T Consensus 341 ~~a~Lf~~~D~Pl~~~LGl~ 360 (368)
T 3nw4_A 341 TQFDLFRFSDAPIMEALSFM 360 (368)
T ss_dssp SSEEEEEEESHHHHHHTTCC
T ss_pred CCEEEEEEeCHHHHHHhCCc
Confidence 99999999988888776555
No 108
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=33.72 E-value=62 Score=30.64 Aligned_cols=45 Identities=13% Similarity=0.015 Sum_probs=29.7
Q ss_pred ecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEec
Q 006374 447 YVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 497 (648)
Q Consensus 447 ~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe 497 (648)
+.||...=.--.+.+++|+|++|.++....++ + ...+++|+.+=-
T Consensus 139 l~PG~~yP~HsHp~EEiy~VLsG~~e~~v~~g-~-----~~~l~pGd~v~i 183 (217)
T 4b29_A 139 WGPGLDYGWHEHLPEELYSVVSGRALFHLRNA-P-----DLMLEPGQTRFH 183 (217)
T ss_dssp ECSSCEEEEEECSSEEEEEEEEECEEEEETTS-C-----CEEECTTCEEEE
T ss_pred ECCCCcCCCCCCCCceEEEEEeCCEEEEECCC-C-----EEecCCCCEEEc
Confidence 44444332223557899999999999877433 3 367889988743
No 109
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=33.25 E-value=1.3e+02 Score=30.77 Aligned_cols=76 Identities=8% Similarity=0.076 Sum_probs=51.6
Q ss_pred eEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEechhhhccCCCCCCCCCCCcceEEEEec
Q 006374 444 PVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVT 523 (648)
Q Consensus 444 ~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~ 523 (648)
...++||..--.--....++|+|++|..++.. +++ ...+++||.|-.-.. ....+++.+
T Consensus 272 ~~~l~pG~~~~~H~h~~~ev~~v~~G~g~~~v--~~~-----~~~~~~GD~~~vP~~--------------~~H~~~n~e 330 (354)
T 2d40_A 272 LQLLPKGFASRVARTTDSTIYHVVEGSGQVII--GNE-----TFSFSAKDIFVVPTW--------------HGVSFQTTQ 330 (354)
T ss_dssp EEEECTTCBCCCBEESSCEEEEEEEEEEEEEE--TTE-----EEEEETTCEEEECTT--------------CCEEEEEEE
T ss_pred EEEECCCCCCCceecCCcEEEEEEeCeEEEEE--CCE-----EEEEcCCCEEEECCC--------------CeEEEEeCC
Confidence 45677776554333456689999999999877 344 367889999864432 234556668
Q ss_pred eEEEEEEeHHHHHHHHH
Q 006374 524 NVEAFAINTDDLRAIVY 540 (648)
Q Consensus 524 ~~~ll~Ls~~df~~ll~ 540 (648)
++.++.++-.-+.+-+.
T Consensus 331 ~~~l~~~~d~p~~~~lg 347 (354)
T 2d40_A 331 DSVLFSFSDRPVQEALG 347 (354)
T ss_dssp EEEEEEEESHHHHHHTT
T ss_pred CEEEEEEcCHHHHHHhC
Confidence 89999987766655443
No 110
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=32.14 E-value=74 Score=28.49 Aligned_cols=48 Identities=10% Similarity=-0.031 Sum_probs=33.2
Q ss_pred CeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEe
Q 006374 442 LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 496 (648)
Q Consensus 442 l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 496 (648)
+....+.||..+-.--....++++|++|.+.+... ++ ...+.+||++-
T Consensus 58 ~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~i~ 105 (167)
T 3ibm_A 58 TRYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVLD--DR-----VEPLTPLDCVY 105 (167)
T ss_dssp EEEEEECTTCBCCCBBCSSCEEEEEEESEEEEEET--TE-----EEEECTTCEEE
T ss_pred EEEEEECCCCCCCCccCCCcEEEEEEeCEEEEEEC--CE-----EEEECCCCEEE
Confidence 33456677766533334577899999999998763 33 36788999874
No 111
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=31.64 E-value=70 Score=27.95 Aligned_cols=52 Identities=10% Similarity=-0.022 Sum_probs=35.4
Q ss_pred cCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEec
Q 006374 441 CLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 497 (648)
Q Consensus 441 ~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe 497 (648)
.+....++||..+-.-.....+.++|++|..+. ..++... -..+++|+++-.
T Consensus 45 ~~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~--~~g~~~~---~~~~~~Gd~~~~ 96 (145)
T 2o1q_A 45 WTAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDV--RGGKAAG---GDTAIAPGYGYE 96 (145)
T ss_dssp EEEEEEECTTEEECCEEESSCEEEEEEEEEEEE--TTCGGGT---SEEEESSEEEEE
T ss_pred EEEEEEECCCCCCCccCCCCCEEEEEEEeEEEE--cCCCEec---ceEeCCCEEEEE
Confidence 356678999998876666677889999999983 2222210 145668887654
No 112
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=31.02 E-value=1.4e+02 Score=25.50 Aligned_cols=45 Identities=13% Similarity=0.034 Sum_probs=31.5
Q ss_pred eEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEec
Q 006374 444 PVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 497 (648)
Q Consensus 444 ~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe 497 (648)
...+.||..-.. ...+++++|++|.+.+... ++ ...+++||.+--
T Consensus 61 ~~~~~pG~~~~h--~~~~E~~~VLeG~~~l~~~--g~-----~~~l~~GD~i~~ 105 (133)
T 2pyt_A 61 FMQWDNAFFPWT--LNYDEIDMVLEGELHVRHE--GE-----TMIAKAGDVMFI 105 (133)
T ss_dssp EEEEEEEEEEEE--CSSEEEEEEEEEEEEEEET--TE-----EEEEETTCEEEE
T ss_pred EEEECCCCcccc--CCCCEEEEEEECEEEEEEC--CE-----EEEECCCcEEEE
Confidence 445777843222 2467999999999998763 44 257889998853
No 113
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=29.94 E-value=42 Score=20.63 Aligned_cols=19 Identities=37% Similarity=0.475 Sum_probs=16.0
Q ss_pred hhhHHhHHHHHHHHHHhhh
Q 006374 564 RTSKACVIQAAWCRYKKRK 582 (648)
Q Consensus 564 ~~~~~~~~e~~~~~~~~r~ 582 (648)
+++++.++|.+|+.+..|.
T Consensus 5 Ee~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 5 EEVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5688999999999997654
No 114
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=29.84 E-value=65 Score=28.96 Aligned_cols=48 Identities=10% Similarity=-0.075 Sum_probs=32.8
Q ss_pred eeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEec
Q 006374 443 KPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 497 (648)
Q Consensus 443 ~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe 497 (648)
....+.||...-.--....++++|++|.+++.. +++ ...+.+||.+=-
T Consensus 56 ~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v--~g~-----~~~l~~GD~i~i 103 (166)
T 3jzv_A 56 RYFEVGPGGHSTLERHQHAHGVMILKGRGHAMV--GRA-----VSAVAPYDLVTI 103 (166)
T ss_dssp EEEEEEEEEECCCBBCSSCEEEEEEEECEEEEE--TTE-----EEEECTTCEEEE
T ss_pred EEEEECCCCccCceeCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEEE
Confidence 334567777654333445689999999999876 333 367889998743
No 115
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=29.11 E-value=68 Score=28.50 Aligned_cols=46 Identities=13% Similarity=0.003 Sum_probs=31.5
Q ss_pred eEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEe
Q 006374 444 PVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 496 (648)
Q Consensus 444 ~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 496 (648)
...+.||...-.--....++++|++|.+++.. +++ ...+.+||.+=
T Consensus 48 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v--~g~-----~~~l~~Gd~i~ 93 (156)
T 3kgz_A 48 YFEVDEGGYSTLERHAHVHAVMIHRGHGQCLV--GET-----ISDVAQGDLVF 93 (156)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEEEEEEEE--TTE-----EEEEETTCEEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 34567776654333445689999999999886 333 36778998764
No 116
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=28.73 E-value=46 Score=21.20 Aligned_cols=19 Identities=32% Similarity=0.294 Sum_probs=16.3
Q ss_pred hhhHHhHHHHHHHHHHhhh
Q 006374 564 RTSKACVIQAAWCRYKKRK 582 (648)
Q Consensus 564 ~~~~~~~~e~~~~~~~~r~ 582 (648)
+++.+.+||++|+++.-|.
T Consensus 5 Ee~aA~vIQrA~R~yl~rr 23 (31)
T 2l53_B 5 EEVSAMVIQRAFRRHLLQR 23 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6789999999999997654
No 117
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=28.14 E-value=2.1e+02 Score=27.17 Aligned_cols=65 Identities=11% Similarity=0.065 Sum_probs=42.5
Q ss_pred eEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEechhhhccCCCCCCCCCCCcceEEEEec
Q 006374 444 PVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVT 523 (648)
Q Consensus 444 ~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~ 523 (648)
...++||...-..- .+++.+|++|.+++... ++ ...+++||++---+ + ....++..+
T Consensus 54 ~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~~--~~-----~~~l~~Gd~~~~p~-----------~---~~H~~~n~~ 110 (246)
T 1sfn_A 54 TAEMPAGAQATESV--YQRFAFVLSGEVDVAVG--GE-----TRTLREYDYVYLPA-----------G---EKHMLTAKT 110 (246)
T ss_dssp EEEECTTCEEECCS--SEEEEEEEEEEEEEECS--SC-----EEEECTTEEEEECT-----------T---CCCEEEEEE
T ss_pred EEEECCCCcCCCCc--eeEEEEEEECEEEEEEC--CE-----EEEECCCCEEEECC-----------C---CCEEEEeCC
Confidence 45678887654432 77899999999998763 33 36789999875332 1 122344447
Q ss_pred eEEEEEEe
Q 006374 524 NVEAFAIN 531 (648)
Q Consensus 524 ~~~ll~Ls 531 (648)
++.++.+.
T Consensus 111 ~~~~l~v~ 118 (246)
T 1sfn_A 111 DARVSVFE 118 (246)
T ss_dssp EEEEEEEE
T ss_pred CEEEEEEE
Confidence 77777664
No 118
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=27.95 E-value=1e+02 Score=28.48 Aligned_cols=54 Identities=11% Similarity=0.142 Sum_probs=35.4
Q ss_pred CeeEEecCCeEEEcc-CCCcCeEEEEEeeeEEEEEecCC---eeeeEEEEecCCCCeEec
Q 006374 442 LKPVLYVQECCIVKE-GDPICEMFFITQGTLLTTTTNGG---RNTSVFKKYLSTGDFWGE 497 (648)
Q Consensus 442 l~~~~~~kge~I~~e-Gd~~~~lyfI~~G~v~v~~~~~~---~~~~~~~~~l~~G~~fGe 497 (648)
+....+.||...-.- ....+++++|++|.+++...+++ .+. ....+.+||.+-.
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~--~~~~l~~GD~~~i 131 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKL--YSRVVRAGETFVI 131 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCE--EEEEEETTCEEEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeE--EEEEECCCCEEEE
Confidence 445677888765322 23357999999999998775432 221 1367889998753
No 119
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=27.39 E-value=66 Score=33.78 Aligned_cols=55 Identities=13% Similarity=0.086 Sum_probs=39.4
Q ss_pred hcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEec
Q 006374 440 KCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 497 (648)
Q Consensus 440 ~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe 497 (648)
..+....+.||..+..--..++++++|++|.+++...+.+... ...+.+||.+--
T Consensus 49 ~s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~~i 103 (416)
T 1uij_A 49 YRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRD---SYNLHPGDAQRI 103 (416)
T ss_dssp CEEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEE---EEEECTTEEEEE
T ss_pred EEEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCCe---EEEecCCCEEEE
Confidence 3456778899987665555678999999999998764332222 477899998743
No 120
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=27.20 E-value=1.1e+02 Score=25.41 Aligned_cols=79 Identities=13% Similarity=0.144 Sum_probs=47.5
Q ss_pred eeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEechhhhccCCCCCCCCCCCcceEEEEe
Q 006374 443 KPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISV 522 (648)
Q Consensus 443 ~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~ 522 (648)
....++||...-.--....++++|++|.+.+.. +++ ...+.+|+.+---.- ..-.+.+.
T Consensus 37 ~~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i--~~~-----~~~l~~Gd~~~i~~~--------------~~H~~~~~ 95 (128)
T 4i4a_A 37 AWCIVRPETKSFRHSHNEYELFIVIQGNAIIRI--NDE-----DFPVTKGDLIIIPLD--------------SEHHVINN 95 (128)
T ss_dssp EEEEECTTEECCCBCCSSEEEEEEEESEEEEEE--TTE-----EEEEETTCEEEECTT--------------CCEEEEEC
T ss_pred EEEEECCCCccCCEecCCeEEEEEEeCEEEEEE--CCE-----EEEECCCcEEEECCC--------------CcEEeEeC
Confidence 345567777443333456689999999999877 233 367789988743221 12234443
Q ss_pred --ceEE--EEEEeHHHHHHHHHhc
Q 006374 523 --TNVE--AFAINTDDLRAIVYQY 542 (648)
Q Consensus 523 --~~~~--ll~Ls~~df~~ll~~~ 542 (648)
++++ ++.++.+-+..++.+.
T Consensus 96 ~~~~~~~~~i~f~~~~~~~~~~~~ 119 (128)
T 4i4a_A 96 NQEDFHFYTIWWDKESTLNFLTRL 119 (128)
T ss_dssp SSSCEEEEEEEECHHHHHHHHHHH
T ss_pred CCCCEEEEEEEECHHHHHHHHHhc
Confidence 3334 4556777777766654
No 121
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=26.56 E-value=66 Score=31.67 Aligned_cols=43 Identities=12% Similarity=0.210 Sum_probs=0.0
Q ss_pred CCe---EEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeE
Q 006374 449 QEC---CIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFW 495 (648)
Q Consensus 449 kge---~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~f 495 (648)
.|+ ..++ -+..+++|++++|.+.+-..++|+-.. ..+++|++|
T Consensus 38 gGpN~R~d~H-~~~~dE~FyqlkG~m~l~~~d~g~~~~---V~i~eGemf 83 (286)
T 2qnk_A 38 GGPNTRKDYH-IEEGEEVFYQLEGDMVLRVLEQGKHRD---VVIRQGEIF 83 (286)
T ss_dssp CSCBCCCCEE-ECSSCEEEEEEESCEEEEEEETTEEEE---EEECTTEEE
T ss_pred eCCCcCccCc-CCCCCeEEEEEeCeEEEEEEeCCceee---EEECCCeEE
No 122
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=26.53 E-value=25 Score=28.61 Aligned_cols=51 Identities=12% Similarity=0.112 Sum_probs=33.4
Q ss_pred CeeEEecCCeEEEccCCC-cCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEe
Q 006374 442 LKPVLYVQECCIVKEGDP-ICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 496 (648)
Q Consensus 442 l~~~~~~kge~I~~eGd~-~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 496 (648)
.+...++||+-+-..-.. ....|+|.+|.+++...++... ...+.+|+.+=
T Consensus 19 V~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~~d~~~~----~~~l~~G~~~~ 70 (98)
T 3lag_A 19 VTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVAPDGTRS----LAQLKTGRSYA 70 (98)
T ss_dssp EEEEEECTTEECCSEECCSCEEEEESSCBC-CEECTTSCEE----CCCBCTTCCEE
T ss_pred EEEEEECCCCccCcEECCCcEEEEEEeccEEEEEeCCCceE----EEEecCCcEEE
Confidence 445678999988555444 4468888999999877554432 24567787653
No 123
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=26.33 E-value=46 Score=34.67 Aligned_cols=49 Identities=18% Similarity=0.089 Sum_probs=35.8
Q ss_pred eeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEec
Q 006374 443 KPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 497 (648)
Q Consensus 443 ~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe 497 (648)
....++||+.+-.--....++|||++|.-.....+ |+ ...+++||++-.
T Consensus 126 ~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~v~-G~-----~~~~~~GD~i~~ 174 (394)
T 3bu7_A 126 GIQTMKAGERAGAHRHAASALRFIMEGSGAYTIVD-GH-----KVELGANDFVLT 174 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECSCEEEEET-TE-----EEEECTTCEEEE
T ss_pred EEEEECCCCCcCCccCCcceEEEEEEeeEEEEEEC-CE-----EEEEcCCCEEEE
Confidence 66788999887655555668999999987554444 44 367889999854
No 124
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=26.11 E-value=67 Score=28.39 Aligned_cols=52 Identities=6% Similarity=-0.132 Sum_probs=33.2
Q ss_pred eeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCe-----eeeEEEEecCCCCeEec
Q 006374 443 KPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGR-----NTSVFKKYLSTGDFWGE 497 (648)
Q Consensus 443 ~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~-----~~~~~~~~l~~G~~fGe 497 (648)
....++||...-.--....++++|++|.+.+...++++ .. ...+.+|+.+-.
T Consensus 44 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~---~~~l~~Gd~i~i 100 (163)
T 1lr5_A 44 WLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQ---EIPFFQNTTFSI 100 (163)
T ss_dssp EEEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCE---EEEECTTEEEEE
T ss_pred EEEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccE---EEEeCCCCEEEE
Confidence 34557777654222223567999999999988755221 01 367889998643
No 125
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=26.02 E-value=91 Score=26.46 Aligned_cols=47 Identities=13% Similarity=0.158 Sum_probs=32.0
Q ss_pred eeEEecCCeEEEccCCC-cCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEe
Q 006374 443 KPVLYVQECCIVKEGDP-ICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 496 (648)
Q Consensus 443 ~~~~~~kge~I~~eGd~-~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 496 (648)
....++||..+-.--.. ..++++|++|.+.+... ++ ...+.+||.+-
T Consensus 60 ~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~i~ 107 (133)
T 1o4t_A 60 ARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDN--GK-----DVPIKAGDVCF 107 (133)
T ss_dssp EEEEECTTCEEEEEECCSEEEEEEEEESEEEEEET--TE-----EEEEETTEEEE
T ss_pred EEEEECCCCccCceECCCccEEEEEEeCEEEEEEC--CE-----EEEeCCCcEEE
Confidence 34567888765322223 46899999999998763 33 36678998864
No 126
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=25.95 E-value=74 Score=28.03 Aligned_cols=47 Identities=15% Similarity=0.080 Sum_probs=32.2
Q ss_pred eeEEecCCeE-E-EccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEe
Q 006374 443 KPVLYVQECC-I-VKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 496 (648)
Q Consensus 443 ~~~~~~kge~-I-~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 496 (648)
....++||.. . .+.-...+++++|++|.+.+... ++ ...+.+||.+-
T Consensus 49 ~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~~--~~-----~~~l~~Gd~i~ 97 (162)
T 3l2h_A 49 HLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTME--ND-----QYPIAPGDFVG 97 (162)
T ss_dssp EEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEET--TE-----EEEECTTCEEE
T ss_pred EEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEEC--CE-----EEEeCCCCEEE
Confidence 4466788874 2 22223567999999999998763 33 36788999873
No 127
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=25.94 E-value=1.3e+02 Score=27.22 Aligned_cols=46 Identities=9% Similarity=0.095 Sum_probs=31.9
Q ss_pred eEEecCCeEEEc-c-CCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEe
Q 006374 444 PVLYVQECCIVK-E-GDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 496 (648)
Q Consensus 444 ~~~~~kge~I~~-e-Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 496 (648)
...++||...-. . .....++++|++|.+.+.. +++ ...+.+||.+-
T Consensus 108 ~~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~--~~~-----~~~l~~GD~i~ 155 (192)
T 1y9q_A 108 EITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF--DEQ-----WHELQQGEHIR 155 (192)
T ss_dssp EEEECTTCEEEECCCSTTCEEEEEEEESCEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE--CCE-----EEEeCCCCEEE
Confidence 345677776542 1 2334699999999999876 333 36789999874
No 128
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=25.50 E-value=80 Score=28.11 Aligned_cols=48 Identities=15% Similarity=0.055 Sum_probs=32.4
Q ss_pred eeEEecCCeEEE--ccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEec
Q 006374 443 KPVLYVQECCIV--KEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 497 (648)
Q Consensus 443 ~~~~~~kge~I~--~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe 497 (648)
....+.||.... +..+..+++++|++|.+.+... ++ ...+.+|+.+--
T Consensus 46 ~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~--~~-----~~~l~~GD~i~i 95 (163)
T 3i7d_A 46 NLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDD--QG-----EHPMVPGDCAAF 95 (163)
T ss_dssp EEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEET--TE-----EEEECTTCEEEE
T ss_pred EEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEEC--CE-----EEEeCCCCEEEE
Confidence 455677887542 2223336999999999998873 33 367889988643
No 129
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=25.41 E-value=99 Score=29.60 Aligned_cols=51 Identities=10% Similarity=0.033 Sum_probs=37.5
Q ss_pred hcCeeEEecCCeEEEc-cCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEec
Q 006374 440 KCLKPVLYVQECCIVK-EGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 497 (648)
Q Consensus 440 ~~l~~~~~~kge~I~~-eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe 497 (648)
..+....++||..+-. +-...++.++|++|++.+.. +++ ...+++||++--
T Consensus 165 ~~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~--~~~-----~~~l~~GD~~~~ 216 (246)
T 1sfn_A 165 FMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL--EEN-----YYPVTAGDIIWM 216 (246)
T ss_dssp EEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE--TTE-----EEEEETTCEEEE
T ss_pred eEEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE--CCE-----EEEcCCCCEEEE
Confidence 3456677899987753 44556789999999998875 344 367889998753
No 130
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=24.86 E-value=76 Score=33.52 Aligned_cols=55 Identities=11% Similarity=0.012 Sum_probs=40.0
Q ss_pred hcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEec
Q 006374 440 KCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 497 (648)
Q Consensus 440 ~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe 497 (648)
..+....+.||..+..--..+++++||++|...+...+.+... ...+.+||.+--
T Consensus 61 ~s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~~i 115 (434)
T 2ea7_A 61 YRVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSRD---SYILEQGHAQKI 115 (434)
T ss_dssp CEEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEE---EEEEETTEEEEE
T ss_pred EEEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCCE---EEEeCCCCEEEE
Confidence 4456778999998776655678999999999998764333221 477889998753
No 131
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=24.70 E-value=79 Score=33.49 Aligned_cols=55 Identities=9% Similarity=0.013 Sum_probs=39.2
Q ss_pred hcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEec
Q 006374 440 KCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 497 (648)
Q Consensus 440 ~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe 497 (648)
-.+....++||..+..--..++++++|++|.+++...+.+... ...+.+||.+--
T Consensus 86 ~s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~~~ 140 (445)
T 2cav_A 86 YRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD---TYKLDQGDAIKI 140 (445)
T ss_dssp EEEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEEE---EEEEETTEEEEE
T ss_pred EEEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCCE---EEEecCCCEEEE
Confidence 3455678999987766555678999999999998764333222 478899998753
No 132
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=24.54 E-value=1e+02 Score=28.42 Aligned_cols=66 Identities=11% Similarity=0.092 Sum_probs=45.6
Q ss_pred hcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEechhhhccCCCCCCCCCCCcceEE
Q 006374 440 KCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCAL 519 (648)
Q Consensus 440 ~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv 519 (648)
..+....+.||..+-.-...+.++.+|++|..+ ++. ..+.+|+++=.-. . ..-+.
T Consensus 125 ~~v~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~----de~-------~~~~~Gd~~~~p~--------g------~~H~p 179 (195)
T 2q1z_B 125 AIARLLWIPGGQAVPDHGHRGLELTLVLQGAFR----DET-------DRFGAGDIEIADQ--------E------LEHTP 179 (195)
T ss_dssp SEEEEEEECTTCBCCCCCCSSCEEEEEEESEEE----CSS-------SEEETTCEEEECS--------S------CCCCC
T ss_pred cEEEEEEECCCCCCCCcCCCCeEEEEEEEEEEE----CCc-------EEECCCeEEEeCc--------C------CccCC
Confidence 345678899999998888889999999999965 221 3456888764321 1 22344
Q ss_pred EE--eceEEEEEE
Q 006374 520 IS--VTNVEAFAI 530 (648)
Q Consensus 520 ~A--~~~~~ll~L 530 (648)
.+ .++|.++..
T Consensus 180 ~a~~~~gc~~l~~ 192 (195)
T 2q1z_B 180 VAERGLDCICLAA 192 (195)
T ss_dssp EECSSSCEEEEEE
T ss_pred EeCCCCCEEEEEE
Confidence 55 678887765
No 133
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=24.33 E-value=69 Score=29.00 Aligned_cols=46 Identities=13% Similarity=0.037 Sum_probs=30.5
Q ss_pred EEecC-CeE-EEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEec
Q 006374 445 VLYVQ-ECC-IVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 497 (648)
Q Consensus 445 ~~~~k-ge~-I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe 497 (648)
..++| |.. =-.....+++++||++|.+.+... ++ ...+.+|++|--
T Consensus 93 v~lpP~G~~~~~~~~h~gEE~~yVLeG~v~vtl~--g~-----~~~L~~Gds~~i 140 (166)
T 2vpv_A 93 LKLPAISGQKKLSNSFRTYITFHVIQGIVEVTVC--KN-----KFLSVKGSTFQI 140 (166)
T ss_dssp EEECSSGGGCEEEECCSEEEEEEEEESEEEEEET--TE-----EEEEETTCEEEE
T ss_pred EEECCCCCCCCCccCCCceEEEEEEEeEEEEEEC--CE-----EEEEcCCCEEEE
Confidence 35667 431 111234567899999999999873 33 367889998753
No 134
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=23.76 E-value=1.2e+02 Score=28.78 Aligned_cols=48 Identities=8% Similarity=0.049 Sum_probs=35.3
Q ss_pred cCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeE
Q 006374 441 CLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFW 495 (648)
Q Consensus 441 ~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~f 495 (648)
.+....++||..+-.---...++++|++|.+++.. +++ ...+.+||.+
T Consensus 35 ~~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~--~~~-----~~~l~~Gd~i 82 (243)
T 3h7j_A 35 EVLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV--GDV-----TRKMTALESA 82 (243)
T ss_dssp EEEEEEECTTEEEEEECCSSEEEEEEEESEEEEEE--TTE-----EEEEETTTCE
T ss_pred EEEEEEECCCCccCCEECCCcEEEEEEEeEEEEEE--CCE-----EEEECCCCEE
Confidence 34455688998876555567789999999999887 333 3678899854
No 135
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=23.60 E-value=86 Score=26.27 Aligned_cols=47 Identities=13% Similarity=0.129 Sum_probs=31.3
Q ss_pred eeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEe
Q 006374 443 KPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 496 (648)
Q Consensus 443 ~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 496 (648)
....++||...-.--....++++|++|.+++... ++ ...+.+|+.+=
T Consensus 51 ~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~i~ 97 (126)
T 1vj2_A 51 RLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKE--QG-----EETVEEGFYIF 97 (126)
T ss_dssp EEEEEEEEEEEEEECCSSCEEEEEEESEEEEECS--SC-----EEEEETTEEEE
T ss_pred EEEEECCCCcCCceeCCCcEEEEEEEeEEEEEEC--CE-----EEEECCCCEEE
Confidence 3445667765533333467899999999998763 23 25677888764
No 136
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=23.37 E-value=85 Score=25.86 Aligned_cols=35 Identities=14% Similarity=0.242 Sum_probs=25.2
Q ss_pred CCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEec
Q 006374 458 DPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 497 (648)
Q Consensus 458 d~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe 497 (648)
...+++++|++|.+++...++.. ...+.+||.+--
T Consensus 51 ~~~~E~~~Vl~G~~~l~~~~~~~-----~~~l~~Gd~i~i 85 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIECEGDTA-----PRVMRPGDWLHV 85 (112)
T ss_dssp CSSEEEEEEEESCEEEEETTCSS-----CEEECTTEEEEE
T ss_pred CCccEEEEEEeCeEEEEECCEEE-----EEEECCCCEEEE
Confidence 45678999999999998743321 146889998753
No 137
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=23.26 E-value=2.6e+02 Score=26.40 Aligned_cols=48 Identities=10% Similarity=-0.122 Sum_probs=34.7
Q ss_pred eEEecC-CeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEech
Q 006374 444 PVLYVQ-ECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEE 498 (648)
Q Consensus 444 ~~~~~k-ge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~ 498 (648)
...++| |..+-.--....++++|++|.+++... ++ ...+.+||.+-.-
T Consensus 149 ~~~~~p~g~~~~~H~H~~~e~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~i~ip 197 (243)
T 3h7j_A 149 LAKIPGNGGEMPFHKHRNEQIGICIGGGYDMTVE--GC-----TVEMKFGTAYFCE 197 (243)
T ss_dssp EEEECTTTEEEEEECCSSEEEEEECSSCEEEEET--TE-----EEEECTTCEEEEC
T ss_pred EEEECCCCCcCCCEeCCCcEEEEEEECEEEEEEC--CE-----EEEECCCCEEEEC
Confidence 446888 877655445567899999999998763 33 2568999987543
No 138
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=22.30 E-value=1.8e+02 Score=30.18 Aligned_cols=79 Identities=9% Similarity=0.010 Sum_probs=53.6
Q ss_pred eeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEechhhhccCCCCCCCCCCCcceEEEE-
Q 006374 443 KPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALIS- 521 (648)
Q Consensus 443 ~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A- 521 (648)
....++||+..-.--...+++|+|++|...+.. +++ ...+++||+|-.-.. ....+..
T Consensus 297 ~~~~l~PG~~~~~HrH~~~~v~~VleG~G~~~V--~ge-----~~~~~~GD~~~iP~g--------------~~H~~~N~ 355 (394)
T 3bu7_A 297 SMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIV--GGK-----RFDWSEHDIFCVPAW--------------TWHEHCNT 355 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECCEEEEE--TTE-----EEEECTTCEEEECTT--------------CCEEEEEC
T ss_pred EEEEECCCCcCCCcccCCcEEEEEEeCeEEEEE--CCE-----EEEEeCCCEEEECCC--------------CeEEeEeC
Confidence 566788888776555567789999999985544 444 367899999865432 1223333
Q ss_pred --eceEEEEEEeHHHHHHHHHhc
Q 006374 522 --VTNVEAFAINTDDLRAIVYQY 542 (648)
Q Consensus 522 --~~~~~ll~Ls~~df~~ll~~~ 542 (648)
-+++.++.++-.-+++-+.-+
T Consensus 356 g~~e~~~ll~i~D~Pl~~~Lgl~ 378 (394)
T 3bu7_A 356 QERDDACLFSFNDFPVMEKLGFW 378 (394)
T ss_dssp CSSCCEEEEEEESHHHHHHTTCC
T ss_pred CCCCCeEEEEeeCHHHHHHhhhh
Confidence 357888888877777665544
No 139
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=22.28 E-value=1.2e+02 Score=30.70 Aligned_cols=51 Identities=14% Similarity=0.135 Sum_probs=34.8
Q ss_pred eeEEecCCeEEEccCCC-cCeEEEEEeeeEEEEEec-CCeeeeEEEEecCCCCeEe
Q 006374 443 KPVLYVQECCIVKEGDP-ICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWG 496 (648)
Q Consensus 443 ~~~~~~kge~I~~eGd~-~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fG 496 (648)
....+.||...-.--.. .+++++|++|.+++...+ +|+.. ...+.+||.+-
T Consensus 55 ~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~---~~~l~~GD~~~ 107 (361)
T 2vqa_A 55 VYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVE---IADVDKGGLWY 107 (361)
T ss_dssp EEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEE---EEEEETTEEEE
T ss_pred EEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEE---EEEEcCCCEEE
Confidence 35567788765332234 789999999999988754 33221 36788999864
No 140
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=21.88 E-value=87 Score=26.61 Aligned_cols=47 Identities=9% Similarity=0.050 Sum_probs=28.5
Q ss_pred EEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEe
Q 006374 445 VLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 496 (648)
Q Consensus 445 ~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 496 (648)
..+.||..+-.--....++++|++|.+.+....+++ ...+.+|+.+-
T Consensus 44 ~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~~~-----~~~l~~Gd~~~ 90 (145)
T 3ht1_A 44 FEVSPNGSTPPHFHEWEHEIYVLEGSMGLVLPDQGR-----TEEVGPGEAIF 90 (145)
T ss_dssp EEEEEEEECCCEECSSCEEEEEEEECEEEEEGGGTE-----EEEECTTCEEE
T ss_pred EEECCCCcCCCccCCCceEEEEEEeEEEEEEeECCE-----EEEECCCCEEE
Confidence 345566543222233456678999999987322333 36788999764
No 141
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=21.64 E-value=1.3e+02 Score=26.16 Aligned_cols=48 Identities=15% Similarity=0.221 Sum_probs=32.1
Q ss_pred eeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEe
Q 006374 443 KPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 496 (648)
Q Consensus 443 ~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 496 (648)
....+.||..+-.--....++++|++|.+.+...+ ++ ...+.+|+.+-
T Consensus 51 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~--~~----~~~l~~Gd~i~ 98 (147)
T 2f4p_A 51 YDVVFEPGARTHWHSHPGGQILIVTRGKGFYQERG--KP----ARILKKGDVVE 98 (147)
T ss_dssp EEEEECTTCEECSEECTTCEEEEEEEEEEEEEETT--SC----CEEEETTCEEE
T ss_pred EEEEECCCCccCceECCCceEEEEEeCEEEEEECC--EE----EEEECCCCEEE
Confidence 34567788765332334478999999999987633 21 14677998874
No 142
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=21.32 E-value=78 Score=25.92 Aligned_cols=45 Identities=11% Similarity=0.086 Sum_probs=29.0
Q ss_pred EEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEE-ecCCCCeEe
Q 006374 445 VLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKK-YLSTGDFWG 496 (648)
Q Consensus 445 ~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~-~l~~G~~fG 496 (648)
..+.||...-.--....++++|++|.+.+...+ .. . .+.+||.+-
T Consensus 32 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~~-~~------~~~l~~Gd~i~ 77 (117)
T 2b8m_A 32 IVLPRGEQMPKHYSNSYVHLIIIKGEMTLTLED-QE------PHNYKEGNIVY 77 (117)
T ss_dssp EEEETTCBCCCEECSSCEEEEEEESEEEEEETT-SC------CEEEETTCEEE
T ss_pred EEECCCCcCCCEeCCCcEEEEEEeCEEEEEECC-EE------EEEeCCCCEEE
Confidence 445666654222234568999999999987632 22 3 678998764
No 143
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=21.11 E-value=1.2e+02 Score=30.99 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=35.8
Q ss_pred CeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEec-CCeeeeEEEEecCCCCeEe
Q 006374 442 LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWG 496 (648)
Q Consensus 442 l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l~~G~~fG 496 (648)
+....+.||...-.--....++++|++|.+++...+ +|+.. ...+.+||++=
T Consensus 81 ~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~---~~~l~~GD~~~ 133 (385)
T 1j58_A 81 SVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSF---IDDVGEGDLWY 133 (385)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEE---EEEEETTEEEE
T ss_pred EEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEE---EEEeCCCCEEE
Confidence 345667888865433334789999999999988755 34421 24788999864
No 144
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=20.85 E-value=1.2e+02 Score=25.15 Aligned_cols=47 Identities=19% Similarity=0.159 Sum_probs=29.7
Q ss_pred eeEEecCCeEEE--ccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEe
Q 006374 443 KPVLYVQECCIV--KEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 496 (648)
Q Consensus 443 ~~~~~~kge~I~--~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fG 496 (648)
....++||..+- ..-+..+.+|+|++|.+.+... ++ ...+.+||.+=
T Consensus 29 ~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i~--~~-----~~~l~~Gd~i~ 77 (125)
T 3cew_A 29 SINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITID--GE-----KIELQAGDWLR 77 (125)
T ss_dssp EEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEET--TE-----EEEEETTEEEE
T ss_pred EEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEEC--CE-----EEEeCCCCEEE
Confidence 345567776542 2223334577799999998763 33 36678898774
No 145
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=20.81 E-value=1.3e+02 Score=29.35 Aligned_cols=51 Identities=14% Similarity=0.088 Sum_probs=38.0
Q ss_pred hcCeeEEecCCeEEEc-cCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEec
Q 006374 440 KCLKPVLYVQECCIVK-EGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 497 (648)
Q Consensus 440 ~~l~~~~~~kge~I~~-eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe 497 (648)
..+....++||..+-. +-...++.++|++|+..+.. +++ ...+++||++--
T Consensus 191 ~~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~--~~~-----~~~v~~GD~~~~ 242 (278)
T 1sq4_A 191 MHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRL--NQD-----WVEVEAGDFMWL 242 (278)
T ss_dssp EEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEE--TTE-----EEEEETTCEEEE
T ss_pred eEEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEEE
Confidence 4566778999999864 44555689999999998765 344 367889998643
Done!