BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006375
(648 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XE4|A Chain A, Structure Of Oligopeptidase B From Leishmania Major
Length = 751
Score = 469 bits (1207), Expect = e-132, Method: Compositional matrix adjust.
Identities = 269/649 (41%), Positives = 374/649 (57%), Gaps = 25/649 (3%)
Query: 1 MFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGP 60
++AE I ++D+SAP+ G Y YYTR ++GK Y +CR V E G
Sbjct: 106 IYAEHISHINEDDMSAPYVYGKYRYYTREVKGKPYKIYCR-----------VFTDKEPG- 153
Query: 61 DAPPEHLILDENVKAEGRGFYSVGCFQ-VSPDNKLVAYAEDTKGDEIYTVYVIDI-ETGT 118
D E +I+D N AEG+ F V + P++ LVA++ D G+E+YT+ I +
Sbjct: 154 DVAAEEVIIDVNQVAEGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQ 213
Query: 119 PVGKPLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYS 177
+ + G + W + +L Y+T DE LR +K W H + QS D+CLY E + ++S
Sbjct: 214 TIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFS 273
Query: 178 LGLQASESKKFLFIASESKITRFVFYLDVSKPEE---LRVLTPRVVGVD-TAASHRGNHF 233
+ + L I S+S T V LD+ K L ++ PR GV H +H
Sbjct: 274 AFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHL 333
Query: 234 FITRRSDELFNSELLACPVDNTSE-TTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKI 292
I N +LL P S+ + VL+ H E V ++ I + ++L V R GL +I
Sbjct: 334 VILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRI 393
Query: 293 TTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESV---FSSRILRFHYSSLRTPPSVYD 349
T + K+ G + V +P++++ ES + R YSSL TP + +D
Sbjct: 394 WTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFD 453
Query: 350 YDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLL 409
K+ V GGFD NY ER++A+A D T+IP+ +VY K+L + P +
Sbjct: 454 VSPQDHSRTAVKVREVGGGFDAANYKVERRFATAPDQTKIPLSVVYHKDL-DMSQPQPCM 512
Query: 410 LYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENG-KFLKKKNTFTD 468
LYGYGSY + DP F+ L DRG IFAIA IRGG ELGR WYE G K+L K+NTF+D
Sbjct: 513 LYGYGSYGLSMDPQFSIQHLPYCDRGMIFAIAHIRGGSELGRAWYEIGAKYLTKRNTFSD 572
Query: 469 FIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLD 528
FIA AE+L+ T +L EGRSAGGLL+GAVLNMRPDLFK A+A VPFVDV+TTM D
Sbjct: 573 FIAAAEFLVNAKLTTPSQLACEGRSAGGLLMGAVLNMRPDLFKVALAGVPFVDVMTTMCD 632
Query: 529 PTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAK 588
P+IPLTT EWEEWG+P + ++Y YM SYSP+DNV+AQ YP+I+V GL+DPRV Y EPAK
Sbjct: 633 PSIPLTTGEWEEWGNPNEYKYYDYMLSYSPMDNVRAQEYPNIMVQCGLHDPRVAYWEPAK 692
Query: 589 FVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRAL 637
+V+KLRE KTD+N +L ++ +GHFS R++ +E+A F+ + L
Sbjct: 693 WVSKLRECKTDNNEILLNIDMESGHFSAKDRYKFWKESAIQQAFVCKHL 741
>pdb|3IUN|A Chain A, Appep_d622n Opened State
pdb|3IUQ|A Chain A, Appep_d622n+pp Closed State
pdb|3IUR|A Chain A, Appep_d266nx+h2h3 Opened State
Length = 693
Score = 223 bits (569), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 182/647 (28%), Positives = 299/647 (46%), Gaps = 76/647 (11%)
Query: 16 APFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKA 75
APFR+G Y+Y+ + + +Q+ L E P+ + LD N +
Sbjct: 83 APFREGRYHYFFKN----DGLQNQNVLWRQQEGKPA--------------EVFLDPNTLS 124
Query: 76 EGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTAS-VEWA 134
G ++ S D +++AY+ G + ++++D+E+ P+ PL V S + W
Sbjct: 125 P-DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL 183
Query: 135 GNEALVYITMDEILRPD-----------KAWLHKLEADQSNDICLY------HEKDDIYS 177
GNE Y + D +PD K + H+L Q +D ++ H +
Sbjct: 184 GNEGFFYSSYD---KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHR----Y 236
Query: 178 LGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDTAAS---HRGNHF 233
+G +E +FL I++ + + Y+ E +LT V G +D S ++G+
Sbjct: 237 VGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLT--VQGDLDADVSLVDNKGSTL 294
Query: 234 FITRRSDELFNSELLACPVDNT--SETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQK 291
++ D N L+ N + LIP R+ V L V+ G L
Sbjct: 295 YLLTNRDAP-NRRLVTVDAANPGPAHWRDLIPERQQV-----------LTVHSGSGYL-- 340
Query: 292 ITTYRLPAVGEPLKSLQGGKSVE--FIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYD 349
Y + A + GK V + + S+ L F + + PP++Y
Sbjct: 341 FAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYR 400
Query: 350 YDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLL 409
++ G L + F +Y +E+++ + DGT++P+ I YRK L KLDGS+P +
Sbjct: 401 FEPKSGAISLYRASAAP--FKPEDYVSEQRFYQSKDGTRVPLIISYRKGL-KLDGSNPTI 457
Query: 410 LYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDF 469
LYGYG +++ P+F+ S + LD G ++A+A +RGGGE G+ W+ G K+N F DF
Sbjct: 458 LYGYGGFDVSLTPSFSVSVANWLDLGGVYAVANLRGGGEYGQAWHLAGTQQNKQNVFDDF 517
Query: 470 IACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDP 529
IA AEYL Y ++L I G S GGLL+GAV+ RPDL + A+ AV +D+L
Sbjct: 518 IAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLMRVALPAVGVLDMLRYH--- 574
Query: 530 TIPLTTAEWEEWGDPWKEEFYF-YMKSYSPVDNVK-AQNYPHILVTAGLNDPRVMYSEPA 587
T T ++G E F Y+K YSP+ NV+ +YP +VT ++ RV+ +
Sbjct: 575 TFTAGTGWAYDYGTSADSEAMFDYLKGYSPLHNVRPGVSYPSTMVTTADHNDRVVPAHSF 634
Query: 588 KFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 634
KF A L+ + L + E AGH + + + + ++A Y F +
Sbjct: 635 KFAATLQADNAGPHPQLIRIETNAGHGAGTPVAKLIEQSADIYAFTL 681
>pdb|3MUN|A Chain A, Appep_pepclose Closed State
pdb|3MUO|A Chain A, Appep_pepclose+pp Closed State
Length = 693
Score = 223 bits (567), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 183/655 (27%), Positives = 305/655 (46%), Gaps = 92/655 (14%)
Query: 16 APFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKA 75
APF G Y+Y+ + + +Q+ L E P+ + LD N +
Sbjct: 83 APFWWGRYHYFFKN----DGLQNQNVLWRQQEGKPA--------------EVFLDPNTLS 124
Query: 76 EGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTAS-VEWA 134
G ++ S D +++AY+ G + ++++D+E+ P+ PL V S + W
Sbjct: 125 P-DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL 183
Query: 135 GNEALVYITMDEILRPD-----------KAWLHKLEADQSNDICLY------HEKDDIYS 177
GNE Y + D +PD K + H+L Q +D ++ H +
Sbjct: 184 GNEGFFYSSYD---KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHR----Y 236
Query: 178 LGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDTAAS---HRGNHF 233
+G +E ++FL I++ + + Y+ E +LT V G +D S ++G+
Sbjct: 237 VGATVTEDQRFLLISAANSTSGNRLYVKDLSQENAPLLT--VQGDLDADVSLVDNKGSTL 294
Query: 234 FITRRSDELFNSELLACPVDNT--SETTVLIPHRE---SVKLQDIQLFIDHLA------- 281
++ D N L+ N + LIP R+ +V LF +++
Sbjct: 295 YLLTNRDAP-NRRLVTVDAANPGPAHWRDLIPERQQVLTVHSGSGYLFAEYMVDATARVE 353
Query: 282 VYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSL 341
++ EG +++ LP +G + G Y DP+ L F + +
Sbjct: 354 QFDYEG--KRVREVALPGLGS-VSGFNG----------YWWDPA--------LYFGFENY 392
Query: 342 RTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVK 401
PP++Y ++ G L + F +Y +E+++ + DGT++P+ I YRK L K
Sbjct: 393 AQPPTLYRFEPKSGAISLYRASAAP--FKPEDYVSEQRFYQSKDGTRVPLIISYRKGL-K 449
Query: 402 LDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLK 461
LDGS+P +LYGYG +++ P+F+ S + LD G ++A+A +RGGGE G+ W+ G
Sbjct: 450 LDGSNPTILYGYGGFDVSLTPSFSVSVANWLDLGGVYAVANLRGGGEYGQAWHLAGTQQN 509
Query: 462 KKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVD 521
K+N F DFIA AEYL Y ++L I G S GGLL+GAV+ RPDL + A+ AV +D
Sbjct: 510 KQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLMRVALPAVGVLD 569
Query: 522 VLTTMLDPTIPLTTAEWEEWGDPWKEEFYF-YMKSYSPVDNVK-AQNYPHILVTAGLNDP 579
+L T T ++G E F Y+K YSP+ NV+ +YP +VT +D
Sbjct: 570 MLRYH---TFTAGTGWAYDYGTSADSEAMFDYLKGYSPLHNVRPGVSYPSTMVTTADHDD 626
Query: 580 RVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 634
RV+ + KF A L+ + L + E AGH + + + + ++A Y F +
Sbjct: 627 RVVPAHSFKFAATLQADNAGPHPQLIRIETNAGHGAGTPVAKLIEQSADIYAFTL 681
>pdb|3IUJ|A Chain A, Appep_wt2 Opened State
pdb|3IUL|A Chain A, Appep_wt1 Opened State
pdb|3IUM|A Chain A, Appep_wtx Opened State
Length = 693
Score = 219 bits (558), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 183/647 (28%), Positives = 294/647 (45%), Gaps = 76/647 (11%)
Query: 16 APFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKA 75
APFR+G Y+Y+ + + +Q+ L E P+ + LD N +
Sbjct: 83 APFREGRYHYFFKN----DGLQNQNVLWRQQEGKPA--------------EVFLDPNTLS 124
Query: 76 EGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTAS-VEWA 134
G ++ S D +++AY+ G + +++ D+E+ P+ PL V S + W
Sbjct: 125 P-DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLXDVESKQPLETPLKDVKFSGISWL 183
Query: 135 GNEALVYITMDEILRPD-----------KAWLHKLEADQSNDICLY------HEKDDIYS 177
GNE Y + D +PD K + H+L Q +D ++ H +
Sbjct: 184 GNEGFFYSSYD---KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHR----Y 236
Query: 178 LGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDTAAS---HRGNHF 233
+G +E +FL I++ + + Y+ E +LT V G +D S ++G+
Sbjct: 237 VGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLT--VQGDLDADVSLVDNKGSTL 294
Query: 234 FITRRSDELFNSELLACPVDNTSETTV--LIPHRESVKLQDIQLFIDHLAVYEREGGLQK 291
++ D N L+ N LIP R+ V L V+ G L
Sbjct: 295 YLLTNRDAP-NRRLVTVDAANPGPAHWRDLIPERQQV-----------LTVHSGSGYL-- 340
Query: 292 ITTYRLPAVGEPLKSLQGGKSVE--FIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYD 349
Y + A + GK V + + S+ L F + + PP++Y
Sbjct: 341 FAEYXVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYR 400
Query: 350 YDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLL 409
++ G L + F +Y +E+++ + DGT++P+ I YRK L KLDGS+P +
Sbjct: 401 FEPKSGAISLYRASAAP--FKPEDYVSEQRFYQSKDGTRVPLIISYRKGL-KLDGSNPTI 457
Query: 410 LYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDF 469
LYGYG +++ P+F+ S + LD G ++A+A +RGGGE G+ W+ G K+N F DF
Sbjct: 458 LYGYGGFDVSLTPSFSVSVANWLDLGGVYAVANLRGGGEYGQAWHLAGTQQNKQNVFDDF 517
Query: 470 IACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDP 529
IA AEYL Y ++L I G S GGLL+GAV RPDL + A+ AV +D L
Sbjct: 518 IAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVXTQRPDLXRVALPAVGVLDXLRYH--- 574
Query: 530 TIPLTTAEWEEWGDPWKEEFYF-YMKSYSPVDNVK-AQNYPHILVTAGLNDPRVMYSEPA 587
T T ++G E F Y+K YSP+ NV+ +YP VT +D RV+ +
Sbjct: 575 TFTAGTGWAYDYGTSADSEAXFDYLKGYSPLHNVRPGVSYPSTXVTTADHDDRVVPAHSF 634
Query: 588 KFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 634
KF A L+ + L + E AGH + + + + ++A Y F +
Sbjct: 635 KFAATLQADNAGPHPQLIRIETNAGHGAGTPVAKLIEQSADIYAFTL 681
>pdb|3IVM|A Chain A, Appep_wt+pp Closed State
Length = 693
Score = 219 bits (558), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 183/647 (28%), Positives = 294/647 (45%), Gaps = 76/647 (11%)
Query: 16 APFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKA 75
APFR+G Y+Y+ + + +Q+ L E P+ + LD N +
Sbjct: 83 APFREGRYHYFFKN----DGLQNQNVLWRQQEGKPA--------------EVFLDPNTLS 124
Query: 76 EGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTAS-VEWA 134
G ++ S D +++AY+ G + +++ D+E+ P+ PL V S + W
Sbjct: 125 P-DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLXDVESKQPLETPLKDVKFSGISWL 183
Query: 135 GNEALVYITMDEILRPD-----------KAWLHKLEADQSNDICLY------HEKDDIYS 177
GNE Y + D +PD K + H+L Q +D ++ H +
Sbjct: 184 GNEGFFYSSYD---KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHR----Y 236
Query: 178 LGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDTAAS---HRGNHF 233
+G +E +FL I++ + + Y+ E +LT V G +D S ++G+
Sbjct: 237 VGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLT--VQGDLDADVSLVDNKGSTL 294
Query: 234 FITRRSDELFNSELLACPVDNTSETTV--LIPHRESVKLQDIQLFIDHLAVYEREGGLQK 291
++ D N L+ N LIP R+ V L V+ G L
Sbjct: 295 YLLTNRDAP-NRRLVTVDAANPGPAHWRDLIPERQQV-----------LTVHSGSGYL-- 340
Query: 292 ITTYRLPAVGEPLKSLQGGKSVE--FIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYD 349
Y + A + GK V + + S+ L F + + PP++Y
Sbjct: 341 FAEYXVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYR 400
Query: 350 YDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLL 409
++ G L + F +Y +E+++ + DGT++P+ I YRK L KLDGS+P +
Sbjct: 401 FEPKSGAISLYRASAAP--FKPEDYVSEQRFYQSKDGTRVPLIISYRKGL-KLDGSNPTI 457
Query: 410 LYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDF 469
LYGYG +++ P+F+ S + LD G ++A+A +RGGGE G+ W+ G K+N F DF
Sbjct: 458 LYGYGGFDVSLTPSFSVSVANWLDLGGVYAVANLRGGGEYGQAWHLAGTQQNKQNVFDDF 517
Query: 470 IACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDP 529
IA AEYL Y ++L I G S GGLL+GAV RPDL + A+ AV +D L
Sbjct: 518 IAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVXTQRPDLXRVALPAVGVLDXLRYH--- 574
Query: 530 TIPLTTAEWEEWGDPWKEEFYF-YMKSYSPVDNVK-AQNYPHILVTAGLNDPRVMYSEPA 587
T T ++G E F Y+K YSP+ NV+ +YP VT +D RV+ +
Sbjct: 575 TFTAGTGWAYDYGTSADSEAXFDYLKGYSPLHNVRPGVSYPSTXVTTADHDDRVVPAHSF 634
Query: 588 KFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 634
KF A L+ + L + E AGH + + + + ++A Y F +
Sbjct: 635 KFAATLQADNAGPHPQLIRIETNAGHGAGTPVAKLIEQSADIYAFTL 681
>pdb|2BKL|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
pdb|2BKL|B Chain B, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 695
Score = 203 bits (517), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 180/668 (26%), Positives = 311/668 (46%), Gaps = 68/668 (10%)
Query: 1 MFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGP 60
+ A K + VS P R+ ++Y RT + KE + +++ + E+G
Sbjct: 59 LAARFKELFYTDSVSTPSRRNGRFFYVRTHKDKE-----KAILYWRQG--------ESGQ 105
Query: 61 DAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV 120
E ++LD N ++ G S+G + VS D K VA+A+ + ++VID+++G
Sbjct: 106 ----EKVLLDPNGWSKD-GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWS 160
Query: 121 GKPLV--GVTASVEWAGNEALVY---------ITMDEILRPDKAWL--HKLEADQSNDIC 167
++ G A+ +W + Y I +DE RP + H L + S D
Sbjct: 161 KVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE--RPGYTTIRYHTLGTEPSKDTV 218
Query: 168 LYHEKDDIYSLGLQASESK--KFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTA 225
+ HE+ + LQ+ S+ K+LF+ + Y ++ R+L + VG
Sbjct: 219 V-HERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLV-KGVGAKYE 276
Query: 226 ASHRGNHFFITRRSDELFNSELLACPVDNTSET-TVLIPHRESVKLQDIQLFIDHLAVYE 284
+ F++ P + ++P S L + + HL++
Sbjct: 277 VHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEY 336
Query: 285 REGGLQKITTYRLPAVGEPLKSLQ--GGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLR 342
+ ++ L G+P++++Q G + + + +D + VF+S
Sbjct: 337 LKDATSEVRVATLK--GKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTS---------FT 385
Query: 343 TPPSVYDYDMDMGISVL-KKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVK 401
TP +Y + G S L K++ + + Y E+ + ++ DGT++P+ +V+RK+L K
Sbjct: 386 TPRQIYKTSVSTGKSELWAKVDVPM---NPEQYQVEQVFYASKDGTKVPMFVVHRKDL-K 441
Query: 402 LDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLK 461
DG+ P LLYGYG + + + F SS L LD G ++A+A +RGGGE G+ W++ G+ K
Sbjct: 442 RDGNAPTLLYGYGGFNVNMEANFRSSILPWLDAGGVYAVANLRGGGEYGKAWHDAGRLDK 501
Query: 462 KKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVD 521
K+N F DF A AEYL++ Y ++L I G S GGLL+GA + RP+L+ A V AVP +D
Sbjct: 502 KQNVFDDFHAAAEYLVQQKYTQPKRLAIYGGSNGGLLVGAAMTQRPELYGAVVCAVPLLD 561
Query: 522 VLTTMLDPT----IPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ-NYPHILVTAGL 576
++ L + IP E+G K E + + +YSP +V+ YP +L+ A
Sbjct: 562 MVRYHLFGSGRTWIP-------EYGTAEKPEDFKTLHAYSPYHHVRPDVRYPALLMMAAD 614
Query: 577 NDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRA 636
+D RV KFVA ++ + L + E AGH + + + Y+FL +
Sbjct: 615 HDDRVDPMHARKFVAAVQNSPGNPATALLRIEANAGHGGADQVAKAIESSVDLYSFLFQV 674
Query: 637 LSMLPSVG 644
L + + G
Sbjct: 675 LDVQGAQG 682
>pdb|1YR2|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 741
Score = 194 bits (492), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 185/667 (27%), Positives = 289/667 (43%), Gaps = 75/667 (11%)
Query: 4 ELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAP 63
+K I E P R+G+ +Y+ + + L+ +AP
Sbjct: 101 RMKALIDYERFGLPQRRGASVFYSWN---SGLMNQSQLLVRPADAPVGTKG--------- 148
Query: 64 PEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP 123
++LD N A+ G ++ + S D +L+AY+ G + TV + + G P+
Sbjct: 149 --RVLLDPNTWAK-DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE 205
Query: 124 LVGVTAS-VEWAGNEALVYITMDE---------ILRPDKAWLHKLEADQSNDICLYHEKD 173
L V S + W GN+AL+Y E + WLH+L QS D ++ +
Sbjct: 206 LKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPE 265
Query: 174 -DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTA--ASHRG 230
G S +++ I S S+ T V + V++ +T +G TA +
Sbjct: 266 LPKRGHGASVSSDGRWVVITS-SEGTDPVNTVHVAR------VTNGKIGPVTALIPDLKA 318
Query: 231 NHFFITRRSDELFNSELLACPVD---------NTSETTVLIPHR----ESVKLQDIQLFI 277
F+ D+L+ P+ +T ++P ESV + +LF
Sbjct: 319 QWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFA 378
Query: 278 DHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFH 337
++ ++ + L SL G S + S P + R
Sbjct: 379 SYI-----HDAKSQVLAFDLDGKPAGAVSLPGIGSASGL----SGRPGD-----RHAYLS 424
Query: 338 YSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRK 397
+SS P +V +D + E V FD ++ E+ + + DGT++P+ IV RK
Sbjct: 425 FSSFTQPATVLA--LDPATAKTTPWEPVHLTFDPADFRVEQVFYPSKDGTKVPMFIVRRK 482
Query: 398 NLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENG 457
+ G P LLYGYG + + P F++ ++ +D G FA+A +RGGGE G W++ G
Sbjct: 483 DA---KGPLPTLLYGYGGFNVALTPWFSAGFMTWIDSGGAFALANLRGGGEYGDAWHDAG 539
Query: 458 KFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAV 517
+ KK+N F DFIA E+LI N + L IEG S GGLLIGAV N RPDLF AA AV
Sbjct: 540 RRDKKQNVFDDFIAAGEWLIANGVTPRHGLAIEGGSNGGLLIGAVTNQRPDLFAAASPAV 599
Query: 518 PFVDVLTTMLDPTIPLTTAEW--EEWGDPWKEEFYFYMKSYSPVDNVKAQ-NYPHILVTA 574
+D+L D T + +++G P KE + ++ YSP NV++ +YP ILVT
Sbjct: 600 GVMDML--RFD---QFTAGRYWVDDYGYPEKEADWRVLRRYSPYHNVRSGVDYPAILVTT 654
Query: 575 GLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 634
D RV+ K+ A L+ L + E AGH S +++ E A FL
Sbjct: 655 ADTDDRVVPGHSFKYTAALQTAAIGPKPHLIRIETRAGHGSGKPIDKQIEETADVQAFLA 714
Query: 635 RALSMLP 641
+ P
Sbjct: 715 HFTGLTP 721
>pdb|3DDU|A Chain A, Prolyl Oligopeptidase With Gsk552
Length = 709
Score = 169 bits (427), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 106/317 (33%), Positives = 168/317 (52%), Gaps = 19/317 (5%)
Query: 336 FHYSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 392
+ ++S +P +Y D+ ++ V + E + G D ++Y T + + + DGT+IP+
Sbjct: 395 YQFTSFLSPGIIYHCDLTKEELEPRVFR--EVTVKGIDASDYQTVQIFYPSKDGTKIPMF 452
Query: 393 IVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGR 451
IV++K +KLDGS P LYGYG + I P ++ SRL + G I A+A IRGGGE G
Sbjct: 453 IVHKKG-IKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGILAVANIRGGGEYGE 511
Query: 452 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFK 511
W++ G K+N F DF AEYLIK Y + ++L I G S GGLL+ A N RPDLF
Sbjct: 512 TWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVAACANQRPDLFG 571
Query: 512 AAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ-----N 566
+A V +D+L + A ++G ++ + ++ YSP+ NVK
Sbjct: 572 CVIAQVGVMDMLKFH---KYTIGHAWTTDYGCSDSKQHFEWLVKYSPLHNVKLPEADDIQ 628
Query: 567 YPHILVTAGLNDPRVMYSEPAKFVAKLREM----KTDDNILLFKCELGAGHFSKSGRFER 622
YP +L+ +D RV+ KF+A L+ + + +N LL + AGH + +
Sbjct: 629 YPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKV 688
Query: 623 LREAAFTYTFLMRALSM 639
+ E + + F+ R L++
Sbjct: 689 IEEVSDMFAFIARCLNV 705
>pdb|1QFM|A Chain A, Prolyl Oligopeptidase From Porcine Muscle
Length = 710
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 104/317 (32%), Positives = 167/317 (52%), Gaps = 19/317 (5%)
Query: 336 FHYSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 392
+ ++S +P +Y D+ ++ V + E + G D ++Y T + + + DGT+IP+
Sbjct: 396 YQFTSFLSPGIIYHCDLTKEELEPRVFR--EVTVKGIDASDYQTVQIFYPSKDGTKIPMF 453
Query: 393 IVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGR 451
IV++K +KLDGS P LYGYG + I P ++ SRL + G + A+A IRGGGE G
Sbjct: 454 IVHKKG-IKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGE 512
Query: 452 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFK 511
W++ G K+N F DF AEYLIK Y + ++L I G S GGLL+ N RPDLF
Sbjct: 513 TWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFG 572
Query: 512 AAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ-----N 566
+A V +D+L + A ++G ++ + ++ YSP+ NVK
Sbjct: 573 CVIAQVGVMDMLKFH---KYTIGHAWTTDYGXSDSKQHFEWLIKYSPLHNVKLPEADDIQ 629
Query: 567 YPHILVTAGLNDPRVMYSEPAKFVAKLREM----KTDDNILLFKCELGAGHFSKSGRFER 622
YP +L+ +D RV+ KF+A L+ + + +N LL + AGH + +
Sbjct: 630 YPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKV 689
Query: 623 LREAAFTYTFLMRALSM 639
+ E + + F+ R L++
Sbjct: 690 IEEVSDMFAFIARCLNI 706
>pdb|1QFS|A Chain A, Prolyl Oligopeptidase From Porcine Muscle With Covalently
Bound Inhibitor Z-Pro-Prolinal
pdb|1H2W|A Chain A, Prolyl Oligopeptidase From Porcine Brain
pdb|3EQ7|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ8|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ9|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|2XDW|A Chain A, Inhibition Of Prolyl Oligopeptidase With A Synthetic
Unnatural Dipeptide
pdb|4AMY|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-1
pdb|4AMZ|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-2
pdb|4AN0|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-3
pdb|4AN1|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-4
Length = 710
Score = 166 bits (421), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 104/317 (32%), Positives = 167/317 (52%), Gaps = 19/317 (5%)
Query: 336 FHYSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 392
+ ++S +P +Y D+ ++ V + E + G D ++Y T + + + DGT+IP+
Sbjct: 396 YQFTSFLSPGIIYHCDLTKEELEPRVFR--EVTVKGIDASDYQTVQIFYPSKDGTKIPMF 453
Query: 393 IVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGR 451
IV++K +KLDGS P LYGYG + I P ++ SRL + G + A+A IRGGGE G
Sbjct: 454 IVHKKG-IKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGE 512
Query: 452 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFK 511
W++ G K+N F DF AEYLIK Y + ++L I G S GGLL+ N RPDLF
Sbjct: 513 TWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFG 572
Query: 512 AAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ-----N 566
+A V +D+L + A ++G ++ + ++ YSP+ NVK
Sbjct: 573 CVIAQVGVMDMLKFH---KYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQ 629
Query: 567 YPHILVTAGLNDPRVMYSEPAKFVAKLREM----KTDDNILLFKCELGAGHFSKSGRFER 622
YP +L+ +D RV+ KF+A L+ + + +N LL + AGH + +
Sbjct: 630 YPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKV 689
Query: 623 LREAAFTYTFLMRALSM 639
+ E + + F+ R L++
Sbjct: 690 IEEVSDMFAFIARCLNI 706
>pdb|1VZ2|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y73c/v427c/c255t
Mutant
Length = 710
Score = 166 bits (419), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 104/317 (32%), Positives = 166/317 (52%), Gaps = 19/317 (5%)
Query: 336 FHYSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 392
+ ++S +P +Y D+ ++ V + E G D ++Y T + + + DGT+IP+
Sbjct: 396 YQFTSFLSPGIIYHCDLTKEELEPRVFR--EVTCKGIDASDYQTVQIFYPSKDGTKIPMF 453
Query: 393 IVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGR 451
IV++K +KLDGS P LYGYG + I P ++ SRL + G + A+A IRGGGE G
Sbjct: 454 IVHKKG-IKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGE 512
Query: 452 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFK 511
W++ G K+N F DF AEYLIK Y + ++L I G S GGLL+ N RPDLF
Sbjct: 513 TWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFG 572
Query: 512 AAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ-----N 566
+A V +D+L + A ++G ++ + ++ YSP+ NVK
Sbjct: 573 CVIAQVGVMDMLKFH---KYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQ 629
Query: 567 YPHILVTAGLNDPRVMYSEPAKFVAKLREM----KTDDNILLFKCELGAGHFSKSGRFER 622
YP +L+ +D RV+ KF+A L+ + + +N LL + AGH + +
Sbjct: 630 YPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKV 689
Query: 623 LREAAFTYTFLMRALSM 639
+ E + + F+ R L++
Sbjct: 690 IEEVSDMFAFIARCLNI 706
>pdb|1VZ3|A Chain A, Prolyl Oligopeptidase From Porcine Brain, T597c Mutant
Length = 710
Score = 165 bits (418), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 104/317 (32%), Positives = 167/317 (52%), Gaps = 19/317 (5%)
Query: 336 FHYSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 392
+ ++S +P +Y D+ ++ V + E + G D ++Y T + + + DGT+IP+
Sbjct: 396 YQFTSFLSPGIIYHCDLTKEELEPRVFR--EVTVKGIDASDYQTVQIFYPSKDGTKIPMF 453
Query: 393 IVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGR 451
IV++K +KLDGS P LYGYG + I P ++ SRL + G + A+A IRGGGE G
Sbjct: 454 IVHKKG-IKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGE 512
Query: 452 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFK 511
W++ G K+N F DF AEYLIK Y + ++L I G S GGLL+ N RPDLF
Sbjct: 513 TWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFG 572
Query: 512 AAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ-----N 566
+A V +D+L + A ++G ++ + ++ YSP+ NVK
Sbjct: 573 CVIAQVGVMDMLKFH---KYTIGHAWTCDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQ 629
Query: 567 YPHILVTAGLNDPRVMYSEPAKFVAKLREM----KTDDNILLFKCELGAGHFSKSGRFER 622
YP +L+ +D RV+ KF+A L+ + + +N LL + AGH + +
Sbjct: 630 YPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKV 689
Query: 623 LREAAFTYTFLMRALSM 639
+ E + + F+ R L++
Sbjct: 690 IEEVSDMFAFIARCLNI 706
>pdb|1E8M|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Inhibitor
pdb|1E8N|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Peptide
pdb|1UOO|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Arg-Pro
pdb|1UOP|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Glu-Pro
pdb|1UOQ|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Glu-Phe-Ser-Pro
pdb|1H2Z|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 165 bits (418), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 103/317 (32%), Positives = 167/317 (52%), Gaps = 19/317 (5%)
Query: 336 FHYSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 392
+ ++S +P +Y D+ ++ V + E + G D ++Y T + + + DGT+IP+
Sbjct: 396 YQFTSFLSPGIIYHCDLTKEELEPRVFR--EVTVKGIDASDYQTVQIFYPSKDGTKIPMF 453
Query: 393 IVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGR 451
IV++K +KLDGS P LYGYG + I P ++ SRL + G + A+A IRGGGE G
Sbjct: 454 IVHKKG-IKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGE 512
Query: 452 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFK 511
W++ G K+N F DF AEYLIK Y + ++L I G + GGLL+ N RPDLF
Sbjct: 513 TWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGANGGLLVATCANQRPDLFG 572
Query: 512 AAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ-----N 566
+A V +D+L + A ++G ++ + ++ YSP+ NVK
Sbjct: 573 CVIAQVGVMDMLKFH---KYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQ 629
Query: 567 YPHILVTAGLNDPRVMYSEPAKFVAKLREM----KTDDNILLFKCELGAGHFSKSGRFER 622
YP +L+ +D RV+ KF+A L+ + + +N LL + AGH + +
Sbjct: 630 YPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKV 689
Query: 623 LREAAFTYTFLMRALSM 639
+ E + + F+ R L++
Sbjct: 690 IEEVSDMFAFIARCLNI 706
>pdb|1H2X|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
pdb|1H2Y|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
With Covalently Bound Inhibitor Z-Pro-Prolinal
Length = 710
Score = 165 bits (417), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 103/317 (32%), Positives = 167/317 (52%), Gaps = 19/317 (5%)
Query: 336 FHYSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 392
+ ++S +P +Y D+ ++ V + E + G D ++Y T + + + DGT+IP+
Sbjct: 396 YQFTSFLSPGIIYHCDLTKEELEPRVFR--EVTVKGIDASDYQTVQIFYPSKDGTKIPMF 453
Query: 393 IVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGR 451
IV++K +KLDGS P LYG+G + I P ++ SRL + G + A+A IRGGGE G
Sbjct: 454 IVHKKG-IKLDGSHPAFLYGFGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGE 512
Query: 452 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFK 511
W++ G K+N F DF AEYLIK Y + ++L I G S GGLL+ N RPDLF
Sbjct: 513 TWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFG 572
Query: 512 AAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ-----N 566
+A V +D+L + A ++G ++ + ++ YSP+ NVK
Sbjct: 573 CVIAQVGVMDMLKFH---KYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQ 629
Query: 567 YPHILVTAGLNDPRVMYSEPAKFVAKLREM----KTDDNILLFKCELGAGHFSKSGRFER 622
YP +L+ +D RV+ KF+A L+ + + +N LL + AGH + +
Sbjct: 630 YPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKV 689
Query: 623 LREAAFTYTFLMRALSM 639
+ E + + F+ R L++
Sbjct: 690 IEEVSDMFAFIARCLNI 706
>pdb|1O6G|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641n Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 165 bits (417), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 103/317 (32%), Positives = 167/317 (52%), Gaps = 19/317 (5%)
Query: 336 FHYSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 392
+ ++S +P +Y D+ ++ V + E + G D ++Y T + + + DGT+IP+
Sbjct: 396 YQFTSFLSPGIIYHCDLTKEELEPRVFR--EVTVKGIDASDYQTVQIFYPSKDGTKIPMF 453
Query: 393 IVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGR 451
IV++K +KLDGS P LYGYG + I P ++ SRL + G + A+A IRGGGE G
Sbjct: 454 IVHKKG-IKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGE 512
Query: 452 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFK 511
W++ G K+N F DF AEYLIK Y + ++L I G S GGLL+ N RPDLF
Sbjct: 513 TWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFG 572
Query: 512 AAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ-----N 566
+A V +D+L + A ++G ++ + ++ YSP+ NVK
Sbjct: 573 CVIAQVGVMDMLKFH---KYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQ 629
Query: 567 YPHILVTAGLNDPRVMYSEPAKFVAKLREM----KTDDNILLFKCELGAGHFSKSGRFER 622
YP +L+ ++ RV+ KF+A L+ + + +N LL + AGH + +
Sbjct: 630 YPSMLLLTADHNDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKV 689
Query: 623 LREAAFTYTFLMRALSM 639
+ E + + F+ R L++
Sbjct: 690 IEEVSDMFAFIARCLNI 706
>pdb|1E5T|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant
Length = 710
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 104/315 (33%), Positives = 166/315 (52%), Gaps = 19/315 (6%)
Query: 338 YSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIV 394
++S +P +Y D+ ++ V + E + G D ++Y T + + + DGT+IP+ IV
Sbjct: 398 FTSFLSPGIIYHCDLTKEELEPRVFR--EVTVKGIDASDYQTVQIFYPSKDGTKIPMFIV 455
Query: 395 YRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGRQW 453
++K +KLDGS P LYGYG + I P ++ SRL + G + A+A IRGGGE G W
Sbjct: 456 HKKG-IKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETW 514
Query: 454 YENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAA 513
++ G K+N F DF AEYLIK Y + ++L I G S GGLL+ N RPDLF
Sbjct: 515 HKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCV 574
Query: 514 VAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ-----NYP 568
+A V +D+L + A ++G ++ + ++ YSP+ NVK YP
Sbjct: 575 IAQVGVMDMLKFH---KYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYP 631
Query: 569 HILVTAGLNDPRVMYSEPAKFVAKLREM----KTDDNILLFKCELGAGHFSKSGRFERLR 624
+L+ +D RV+ KF+A L+ + + +N LL + AGH + + +
Sbjct: 632 SMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGMPTAKVIE 691
Query: 625 EAAFTYTFLMRALSM 639
E + + F+ R L++
Sbjct: 692 EVSDMFAFIARCLNI 706
>pdb|1O6F|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 103/317 (32%), Positives = 166/317 (52%), Gaps = 19/317 (5%)
Query: 336 FHYSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 392
+ ++S +P +Y D+ ++ V + E + G D ++Y T + + + DGT+IP+
Sbjct: 396 YQFTSFLSPGIIYHCDLTKEELEPRVFR--EVTVKGIDASDYQTVQIFYPSKDGTKIPMF 453
Query: 393 IVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGR 451
IV++K +KLDGS P LYGYG + I P ++ SRL + G + A+A IRGGGE G
Sbjct: 454 IVHKKG-IKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGE 512
Query: 452 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFK 511
W++ G K+N F DF AEYLIK Y + ++L I G S GGLL+ N RPDLF
Sbjct: 513 TWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFG 572
Query: 512 AAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ-----N 566
+A V +D+L + A ++G ++ + ++ YSP+ NVK
Sbjct: 573 CVIAQVGVMDMLKFH---KYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQ 629
Query: 567 YPHILVTAGLNDPRVMYSEPAKFVAKLREM----KTDDNILLFKCELGAGHFSKSGRFER 622
YP +L+ + RV+ KF+A L+ + + +N LL + AGH + +
Sbjct: 630 YPSMLLLTADHADRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKV 689
Query: 623 LREAAFTYTFLMRALSM 639
+ E + + F+ R L++
Sbjct: 690 IEEVSDMFAFIARCLNI 706
>pdb|4AX4|A Chain A, Prolyl Oligopeptidase From Porcine Brain, H680a Mutant
Length = 710
Score = 162 bits (411), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 103/317 (32%), Positives = 166/317 (52%), Gaps = 19/317 (5%)
Query: 336 FHYSSLRTPPSVYDYDM---DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPIC 392
+ ++S +P +Y D+ ++ V + E + G D ++Y T + + + DGT+IP+
Sbjct: 396 YQFTSFLSPGIIYHCDLTKEELEPRVFR--EVTVKGIDASDYQTVQIFYPSKDGTKIPMF 453
Query: 393 IVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGR 451
IV++K +KLDGS P LYGYG + I P ++ SRL + G + A+A IRGGGE G
Sbjct: 454 IVHKKG-IKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGE 512
Query: 452 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFK 511
W++ G K+N F DF AEYLIK Y + ++L I G S GGLL+ N RPDLF
Sbjct: 513 TWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFG 572
Query: 512 AAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ-----N 566
+A V +D+L + A ++G ++ + ++ YSP+ NVK
Sbjct: 573 CVIAQVGVMDMLKFH---KYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQ 629
Query: 567 YPHILVTAGLNDPRVMYSEPAKFVAKLREM----KTDDNILLFKCELGAGHFSKSGRFER 622
YP +L+ +D RV+ KF+A L+ + + +N LL + AG + +
Sbjct: 630 YPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGAGAGKPTAKV 689
Query: 623 LREAAFTYTFLMRALSM 639
+ E + + F+ R L++
Sbjct: 690 IEEVSDMFAFIARCLNI 706
>pdb|4HVT|A Chain A, Structure Of A Post-Proline Cleaving Enzyme From
Rickettsia Typhi
Length = 711
Score = 146 bits (369), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 150/299 (50%), Gaps = 13/299 (4%)
Query: 344 PPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLD 403
PP++Y + + LK I L FD+ NY E+K A++ DG +IP +VY+K +K D
Sbjct: 420 PPTIYLW---VKTHELKIIRKALYSFDSENYVLEQKEATSFDGVKIPYFLVYKKG-IKFD 475
Query: 404 GSDPLLLYGYGSYEICNDPAFNSSRLSL-LDRGFIFAIAQIRGGGELGRQWYENGKFLKK 462
G +P LL YG +++ N P F+ + + + + +A IRGGGE G +W+++ + +K+
Sbjct: 476 GKNPTLLEAYGGFQVINAPYFSRIKNEVWVKNAGVSVLANIRGGGEFGPEWHKSAQGIKR 535
Query: 463 KNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDV 522
+ F DF A +E LIK + E L I+G S GGLL+ + RP+LF A VP +D
Sbjct: 536 QTAFNDFFAVSEELIKQNITSPEYLGIKGGSNGGLLVSVAMTQRPELFGAVACEVPILD- 594
Query: 523 LTTMLDPTIPLTTAEW-EEWGDPWKEEFYFYMKSYSPVDNVK-AQNYPHILVTAGLNDPR 580
M+ W E+GDP ++K Y+P++N+ Q YP +L+T + D R
Sbjct: 595 ---MIRYKEFGAGHSWVTEYGDPEIPNDLLHIKKYAPLENLSLTQKYPTVLITDSVLDQR 651
Query: 581 VMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSM 639
V F L + L + +GH S S E YTF AL +
Sbjct: 652 VHPWHGRIFEYVLAQNPNTKTYFLESKD--SGHGSGSDLKESANYFINLYTFFANALKL 708
>pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE6|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE7|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|1VE7|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|2HU5|A Chain A, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU5|B Chain B, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU7|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU7|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|3O4G|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 79/193 (40%), Gaps = 10/193 (5%)
Query: 380 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFA 439
W + DG+++P V G +L++G G + +D ++++ SL GF
Sbjct: 337 WVESFDGSRVP-TYVLESGRAPTPGPTVVLVHG-GPFAEDSD-SWDTFAASLAAAGFHVV 393
Query: 440 IAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLI 499
+ RG G +W D A A + ++ ++ L I G S GG +
Sbjct: 394 MPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLASE--LYIMGYSYGGYMT 451
Query: 500 GAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPV 559
L M+P LFKA VA VD + L+ A + + + M+S SP+
Sbjct: 452 LCALTMKPGLFKAGVAGASVVD-----WEEMYELSDAAFRNFIEQLTGGSREIMRSRSPI 506
Query: 560 DNVKAQNYPHILV 572
++V P L+
Sbjct: 507 NHVDRIKEPLALI 519
>pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 79/193 (40%), Gaps = 10/193 (5%)
Query: 380 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFA 439
W + DG+++P V G +L++G G + +D ++++ SL GF
Sbjct: 337 WVESFDGSRVP-TYVLESGRAPTPGPTVVLVHG-GPFAEDSD-SWDTFAASLAAAGFHVV 393
Query: 440 IAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLI 499
+ RG G +W D A A + ++ ++ L I G S GG +
Sbjct: 394 MPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLASE--LYIMGYSYGGYMT 451
Query: 500 GAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPV 559
L M+P LFKA VA VD + L+ A + + + M+S SP+
Sbjct: 452 LCALTMKPGLFKAGVAGASVVD-----WEEMYELSDAAFRNFIEQLTGGSREIMRSRSPI 506
Query: 560 DNVKAQNYPHILV 572
++V P L+
Sbjct: 507 NHVDRIKEPLALI 519
>pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 79/193 (40%), Gaps = 10/193 (5%)
Query: 380 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFA 439
W + DG+++P V G +L++G G + +D ++++ SL GF
Sbjct: 337 WVESFDGSRVP-TYVLESGRAPTPGPTVVLVHG-GPFAEDSD-SWDTFAASLAAAGFHVV 393
Query: 440 IAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLI 499
+ RG G +W D A A + ++ ++ L I G S GG +
Sbjct: 394 MPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLASE--LYIMGYSYGGYMT 451
Query: 500 GAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPV 559
L M+P LFKA VA VD + L+ A + + + M+S SP+
Sbjct: 452 LCALTMKPGLFKAGVAGASVVD-----WEEMYELSDAAFRNFIEQLTGGSREIMRSRSPI 506
Query: 560 DNVKAQNYPHILV 572
++V P L+
Sbjct: 507 NHVDRIKEPLALI 519
>pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
pdb|2QZP|B Chain B, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
Length = 562
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 79/193 (40%), Gaps = 10/193 (5%)
Query: 380 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFA 439
W + DG+++P V G +L++G G + +D ++++ SL GF
Sbjct: 317 WVESFDGSRVP-TYVLESGRAPTPGPTVVLVHG-GPFAEDSD-SWDTFAASLAAAGFHVV 373
Query: 440 IAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLI 499
+ RG G +W D A A + ++ ++ L I G S GG +
Sbjct: 374 MPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLASE--LYIMGYSYGGYMT 431
Query: 500 GAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPV 559
L M+P LFKA VA VD + L+ A + + + M+S SP+
Sbjct: 432 LCALTMKPGLFKAGVAGASVVD-----WEEMYELSDAAFRNFIEQLTGGSREIMRSRSPI 486
Query: 560 DNVKAQNYPHILV 572
++V P L+
Sbjct: 487 NHVDRIKEPLALI 499
>pdb|2HU8|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU8|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
Length = 582
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 79/193 (40%), Gaps = 10/193 (5%)
Query: 380 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFA 439
W + DG+++P V G +L++G G + +D ++++ SL GF
Sbjct: 337 WVESFDGSRVP-TYVLESGRAPTPGPTVVLVHG-GPFAEDSD-SWDTFAASLAAAGFHVV 393
Query: 440 IAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLI 499
+ RG G +W D A A + ++ ++ L I G + GG +
Sbjct: 394 MPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLASE--LYIMGYAYGGYMT 451
Query: 500 GAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPV 559
L M+P LFKA VA VD + L+ A + + + M+S SP+
Sbjct: 452 LCALTMKPGLFKAGVAGASVVD-----WEEMYELSDAAFRNFIEQLTGGSREIMRSRSPI 506
Query: 560 DNVKAQNYPHILV 572
++V P L+
Sbjct: 507 NHVDRIKEPLALI 519
>pdb|2QR5|A Chain A, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
pdb|2QR5|B Chain B, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
Length = 582
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 78/193 (40%), Gaps = 10/193 (5%)
Query: 380 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFA 439
W + DG+++P V G +L+ G G + +D ++++ SL GF
Sbjct: 337 WVESFDGSRVP-TYVLESGRAPTPGPTVVLVAG-GPFAEDSD-SWDTFAASLAAAGFHVV 393
Query: 440 IAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLI 499
+ RG G +W D A A + ++ ++ L I G S GG +
Sbjct: 394 MPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLASE--LYIMGYSYGGYMT 451
Query: 500 GAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPV 559
L M+P LFKA VA VD + L+ A + + + M+S SP+
Sbjct: 452 LCALTMKPGLFKAGVAGASVVD-----WEEMYELSDAAFRNFIEQLTGGSREIMRSRSPI 506
Query: 560 DNVKAQNYPHILV 572
++V P L+
Sbjct: 507 NHVDRIKEPLALI 519
>pdb|2QJR|A Chain A, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf
pdb|2QJR|B Chain B, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf
pdb|3F8S|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
pdb|3F8S|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
Length = 748
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 468 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 527
D I A K + +++ I G S GG + VL +FK +A P
Sbjct: 575 DQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP--------- 625
Query: 528 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 575
+ WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 626 -------VSRWEYYDSVYTER---YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHG 675
Query: 576 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 608
D V + + A+ L ++ D + + E
Sbjct: 676 TADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 708
>pdb|2BGR|A Chain A, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides
Tat(1-9) Bound To The Active Site Of Dipeptidyl
Peptidase Iv (Cd26)
pdb|2BGR|B Chain B, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides
Tat(1-9) Bound To The Active Site Of Dipeptidyl
Peptidase Iv (Cd26)
Length = 738
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 468 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 527
D I A K + +++ I G S GG + VL +FK +A P
Sbjct: 577 DQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP--------- 627
Query: 528 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 575
+ WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 628 -------VSRWEYYDSVYTER---YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHG 677
Query: 576 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 608
D V + + A+ L ++ D + + E
Sbjct: 678 TADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 710
>pdb|2JID|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4-
Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine
pdb|2JID|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4-
Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine
Length = 736
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 468 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 527
D I A K + +++ I G S GG + VL +FK +A P
Sbjct: 575 DQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP--------- 625
Query: 528 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 575
+ WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 626 -------VSRWEYYDSVYTER---YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHG 675
Query: 576 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 608
D V + + A+ L ++ D + + E
Sbjct: 676 TADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 708
>pdb|3QBJ|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
pdb|3QBJ|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
Length = 748
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 468 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 527
D I A K + +++ I G S GG + VL +FK +A P
Sbjct: 575 DQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP--------- 625
Query: 528 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 575
+ WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 626 -------VSRWEYYDSVYTER---YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHG 675
Query: 576 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 608
D V + + A+ L ++ D + + E
Sbjct: 676 TADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 708
>pdb|3CCB|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|C Chain C, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|D Chain D, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|C Chain C, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|D Chain D, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3G0B|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0C|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0D|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0G|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3O95|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O9V|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3OPM|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|4G1F|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
Length = 740
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 468 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 527
D I A K + +++ I G S GG + VL +FK +A P
Sbjct: 579 DQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP--------- 629
Query: 528 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 575
+ WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 630 -------VSRWEYYDSVYTER---YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHG 679
Query: 576 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 608
D V + + A+ L ++ D + + E
Sbjct: 680 TADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 712
>pdb|2GBC|A Chain A, Native Dpp-Iv (Cd26) From Rat
pdb|2GBC|B Chain B, Native Dpp-Iv (Cd26) From Rat
pdb|2GBF|A Chain A, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #1
pdb|2GBF|B Chain B, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #1
pdb|2GBG|A Chain A, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #2
pdb|2GBG|B Chain B, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #2
pdb|2GBI|A Chain A, Rat Dpp-Iv With Xanthine Inhibitor 4
pdb|2GBI|B Chain B, Rat Dpp-Iv With Xanthine Inhibitor 4
pdb|2I3Z|A Chain A, Rat Dpp-iv With Xanthine Mimetic Inhibitor #7
pdb|2I3Z|B Chain B, Rat Dpp-iv With Xanthine Mimetic Inhibitor #7
pdb|2OAE|A Chain A, Crystal Structure Of Rat Dipeptidyl Peptidase (Dppiv) With
Thiazole-Based Peptide Mimetic #31
pdb|2OAE|B Chain B, Crystal Structure Of Rat Dipeptidyl Peptidase (Dppiv) With
Thiazole-Based Peptide Mimetic #31
pdb|4FFV|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFV|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFW|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
pdb|4FFW|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
Length = 730
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 468 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 527
D I A +K + +++ I G S GG + VL +FK +A P
Sbjct: 569 DQIEAARQFLKMGFVDSKRVAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP--------- 619
Query: 528 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 575
+ WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 620 -------VSRWEYYDSVYTER---YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHG 669
Query: 576 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 608
D V + + A+ L + D + + E
Sbjct: 670 TADDNVHFQQSAQISKALVDAGVDFQAMWYTDE 702
>pdb|1R9M|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution
Length = 733
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 468 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 527
D I A K + +++ I G S GG + VL +FK +A P
Sbjct: 572 DQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP--------- 622
Query: 528 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 575
+ WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 623 -------VSRWEYYDSVYTER---YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHG 672
Query: 576 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 608
D V + + A+ L ++ D + + E
Sbjct: 673 TADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 705
>pdb|2RIP|A Chain A, Structure Of Dppiv In Complex With An Inhibitor
Length = 729
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 468 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 527
D I A K + +++ I G S GG + VL +FK +A P
Sbjct: 568 DQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP--------- 618
Query: 528 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 575
+ WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 619 -------VSRWEYYDSVYTER---YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHG 668
Query: 576 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 608
D V + + A+ L ++ D + + E
Sbjct: 669 TADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 701
>pdb|1N1M|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|1N1M|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|1NU6|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv)
pdb|1NU6|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv)
pdb|1NU8|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv) In Complex With Diprotin A (Ili)
pdb|1NU8|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv) In Complex With Diprotin A (Ili)
pdb|1TK3|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase IvCD26
pdb|1TK3|B Chain B, Crystal Structure Of Human Apo Dipeptidyl Peptidase IvCD26
pdb|1TKR|A Chain A, Human Dipeptidyl Peptidase IvCD26 INHIBITED WITH
DIISOPROPYL Fluorophosphate
pdb|1TKR|B Chain B, Human Dipeptidyl Peptidase IvCD26 INHIBITED WITH
DIISOPROPYL Fluorophosphate
pdb|1W1I|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1RWQ|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With
5-Aminomethyl-6-(2,4-
Dichloro-Phenyl)-2-(3,
5-Dimethoxy-Phenyl)-Pyrimidin-4-Ylamine
pdb|1RWQ|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With
5-Aminomethyl-6-(2,4-
Dichloro-Phenyl)-2-(3,
5-Dimethoxy-Phenyl)-Pyrimidin-4-Ylamine
pdb|2BGN|A Chain A, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|B Chain B, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|C Chain C, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|D Chain D, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2AJL|I Chain I, X-Ray Structure Of Novel Biaryl-Based Dipeptidyl Peptidase
Iv Inhibitor
pdb|2AJL|J Chain J, X-Ray Structure Of Novel Biaryl-Based Dipeptidyl Peptidase
Iv Inhibitor
pdb|2BUB|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|2BUB|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|2OGZ|A Chain A, Crystal Structure Of Dpp-Iv Complexed With Lilly Aryl
Ketone Inhibitor
pdb|2OGZ|B Chain B, Crystal Structure Of Dpp-Iv Complexed With Lilly Aryl
Ketone Inhibitor
pdb|2OQI|A Chain A, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|B Chain B, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|C Chain C, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|D Chain D, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OLE|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complex With Cyclic Hydrazine Derivatives
pdb|2OLE|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complex With Cyclic Hydrazine Derivatives
pdb|3BJM|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With (1s,3s,
5s)-2-[(2s)-
2-Amino-2-(3-Hydroxytricyclo[3.3.1.13,7]dec-1-
Yl)acetyl]-2- Azabicyclo[3.1.0]hexane-3-Carbonitrile
(Cas), (1s,3s,5s)-2-((2s)-2-
Amino-2-(3-Hydroxyadamantan-1-
Yl)acetyl)-2-Azabicyclo[3.1.0]hexane- 3-Carbonitrile
(Iupac), Or Bms-477118
pdb|3BJM|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With (1s,3s,
5s)-2-[(2s)-
2-Amino-2-(3-Hydroxytricyclo[3.3.1.13,7]dec-1-
Yl)acetyl]-2- Azabicyclo[3.1.0]hexane-3-Carbonitrile
(Cas), (1s,3s,5s)-2-((2s)-2-
Amino-2-(3-Hydroxyadamantan-1-
Yl)acetyl)-2-Azabicyclo[3.1.0]hexane- 3-Carbonitrile
(Iupac), Or Bms-477118
pdb|3EIO|A Chain A, Crystal Structure Analysis Of Dppiv Inhibitor
pdb|3EIO|B Chain B, Crystal Structure Analysis Of Dppiv Inhibitor
pdb|3H0C|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|3H0C|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|3KWF|A Chain A, Human Dpp-Iv With Carmegliptin
(S)-1-((2s,3s,11bs)-2-Amino-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,1-
A]isoquinolin-3-Yl)-4-Fluoromethyl-Pyrrolidin-2-One
pdb|3KWF|B Chain B, Human Dpp-Iv With Carmegliptin
(S)-1-((2s,3s,11bs)-2-Amino-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,1-
A]isoquinolin-3-Yl)-4-Fluoromethyl-Pyrrolidin-2-One
pdb|3OC0|A Chain A, Structure Of Human Dpp-Iv With Hts Hit
(2s,3s,11bs)-3-Butyl-9,10-
Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3OC0|B Chain B, Structure Of Human Dpp-Iv With Hts Hit
(2s,3s,11bs)-3-Butyl-9,10-
Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3KWJ|A Chain A, Strucutre Of Human Dpp-Iv With
(2s,3s,11bs)-3-(3-Fluoromethyl-Phenyl)-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3KWJ|B Chain B, Strucutre Of Human Dpp-Iv With
(2s,3s,11bs)-3-(3-Fluoromethyl-Phenyl)-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|4DSA|A Chain A, Crystal Structure Of Dpp-iv With Compound C1
pdb|4DSA|B Chain B, Crystal Structure Of Dpp-iv With Compound C1
pdb|4DSZ|A Chain A, Crystal Structure Of Dpp-iv With Compound C2
pdb|4DSZ|B Chain B, Crystal Structure Of Dpp-iv With Compound C2
pdb|4DTC|A Chain A, Crystal Structure Of Dpp-iv With Compound C5
pdb|4DTC|B Chain B, Crystal Structure Of Dpp-iv With Compound C5
Length = 728
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 468 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 527
D I A K + +++ I G S GG + VL +FK +A P
Sbjct: 567 DQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP--------- 617
Query: 528 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 575
+ WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 618 -------VSRWEYYDSVYTER---YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHG 667
Query: 576 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 608
D V + + A+ L ++ D + + E
Sbjct: 668 TADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 700
>pdb|2RGU|A Chain A, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor
pdb|2RGU|B Chain B, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor
Length = 734
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 468 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 527
D I A K + +++ I G S GG + VL +FK +A P
Sbjct: 567 DQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP--------- 617
Query: 528 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 575
+ WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 618 -------VSRWEYYDSVYTER---YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHG 667
Query: 576 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 608
D V + + A+ L ++ D + + E
Sbjct: 668 TADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 700
>pdb|1X70|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino
Acid Inhibitor
pdb|1X70|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino
Acid Inhibitor
pdb|2FJP|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|2FJP|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|2HHA|A Chain A, The Structure Of Dpp4 In Complex With An Oxadiazole
Inhibitor
pdb|2HHA|B Chain B, The Structure Of Dpp4 In Complex With An Oxadiazole
Inhibitor
pdb|2IIT|A Chain A, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-one Inhibitor
pdb|2IIT|B Chain B, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-one Inhibitor
pdb|2IIV|A Chain A, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-One Inhibitor
pdb|2IIV|B Chain B, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-One Inhibitor
pdb|2OPH|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With An Alpha
Amino Acid Inhibitor
pdb|2OPH|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With An Alpha
Amino Acid Inhibitor
pdb|2P8S|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
CYCLOHEXALAMINE Inhibitor
pdb|2P8S|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
CYCLOHEXALAMINE Inhibitor
pdb|2QOE|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A
Triazolopiperazine- Based Beta Amino Acid Inhibitor
pdb|2QOE|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With A
Triazolopiperazine- Based Beta Amino Acid Inhibitor
pdb|3C43|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLOUROOLEFIN Inhibitor
pdb|3C43|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLOUROOLEFIN Inhibitor
pdb|3C45|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLUOROOLEFIN Inhibitor
pdb|3C45|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLUOROOLEFIN Inhibitor
pdb|3D4L|A Chain A, Human Dipeptidyl Peptidase Iv/cd26 In Complex With A Novel
Inhibitor
pdb|3D4L|B Chain B, Human Dipeptidyl Peptidase Iv/cd26 In Complex With A Novel
Inhibitor
pdb|2QKY|A Chain A, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|B Chain B, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|C Chain C, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|D Chain D, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|3HAB|A Chain A, The Structure Of Dpp4 In Complex With Piperidine Fused
Benzimidazole 25
pdb|3HAB|B Chain B, The Structure Of Dpp4 In Complex With Piperidine Fused
Benzimidazole 25
pdb|3HAC|A Chain A, The Structure Of Dpp-4 In Complex With Piperidine Fused
Imidazopyridine 34
pdb|3HAC|B Chain B, The Structure Of Dpp-4 In Complex With Piperidine Fused
Imidazopyridine 34
Length = 728
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 468 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 527
D I A K + +++ I G S GG + VL +FK +A P
Sbjct: 567 DQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP--------- 617
Query: 528 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 575
+ WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 618 -------VSRWEYYDSVYTER---YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHG 667
Query: 576 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 608
D V + + A+ L ++ D + + E
Sbjct: 668 TADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 700
>pdb|1PFQ|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv /
Cd26
pdb|1PFQ|B Chain B, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv /
Cd26
Length = 731
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 468 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 527
D I A K + +++ I G S GG + VL +FK +A P
Sbjct: 570 DQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP--------- 620
Query: 528 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 575
+ WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 621 -------VSRWEYYDSVYTER---YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHG 670
Query: 576 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 608
D V + + A+ L ++ D + + E
Sbjct: 671 TADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 703
>pdb|3Q8W|A Chain A, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv
Complex
pdb|3Q8W|B Chain B, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv
Complex
Length = 732
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 468 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 527
D I A K + +++ I G S GG + VL +FK +A P
Sbjct: 567 DQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP--------- 617
Query: 528 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 575
+ WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 618 -------VSRWEYYDSVYTER---YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHG 667
Query: 576 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 608
D V + + A+ L ++ D + + E
Sbjct: 668 TADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 700
>pdb|2G5P|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ac
pdb|2G5P|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ac
pdb|2G5T|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ag
pdb|2G5T|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ag
pdb|2G63|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2I03|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2OQV|A Chain A, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidine-
Constrained Phenethylamine
pdb|2OQV|B Chain B, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidine-
Constrained Phenethylamine
pdb|2I78|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2OAG|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
Length = 726
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 468 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 527
D I A K + +++ I G S GG + VL +FK +A P
Sbjct: 567 DQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP--------- 617
Query: 528 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 575
+ WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 618 -------VSRWEYYDSVYTER---YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHG 667
Query: 576 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 608
D V + + A+ L ++ D + + E
Sbjct: 668 TADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 700
>pdb|3NOX|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-(6-
(Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1,
2-A]pyrimidin- 2-Yl)(Morpholino)methanone
pdb|3NOX|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-(6-
(Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1,
2-A]pyrimidin- 2-Yl)(Morpholino)methanone
pdb|3SWW|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SWW|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SX4|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SX4|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3Q0T|A Chain A, Crystal Structure Of Human Dpp-iv In Complex Withsa-(+)-
Methyl2-(3-
(aminomethyl)-4-(2,4-dichlorophenyl)-2-methyl-
7-oxo-5h-pyrrolo[3,4- B]pyridin-6(7h)-yl)acetate
pdb|3Q0T|B Chain B, Crystal Structure Of Human Dpp-iv In Complex Withsa-(+)-
Methyl2-(3-
(aminomethyl)-4-(2,4-dichlorophenyl)-2-methyl-
7-oxo-5h-pyrrolo[3,4- B]pyridin-6(7h)-yl)acetate
Length = 753
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 468 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 527
D I A K + +++ I G S GG + VL +FK +A P
Sbjct: 569 DQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP--------- 619
Query: 528 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 575
+ WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 620 -------VSRWEYYDSVYTER---YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHG 669
Query: 576 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 608
D V + + A+ L ++ D + + E
Sbjct: 670 TADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 702
>pdb|1U8E|A Chain A, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F
pdb|1U8E|B Chain B, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F
Length = 728
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 468 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 527
D I A K + +++ I G S GG + VL +FK +A P
Sbjct: 567 DQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP--------- 617
Query: 528 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 575
+ WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 618 -------VSRWEYYDSVYTER---YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHG 667
Query: 576 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 608
D V + + A+ L ++ D + + E
Sbjct: 668 TADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 700
>pdb|2ONC|A Chain A, Crystal Structure Of Human Dpp-4
pdb|2ONC|B Chain B, Crystal Structure Of Human Dpp-4
pdb|2ONC|C Chain C, Crystal Structure Of Human Dpp-4
pdb|2ONC|D Chain D, Crystal Structure Of Human Dpp-4
Length = 731
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 468 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 527
D I A K + +++ I G S GG + VL +FK +A P
Sbjct: 570 DQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP--------- 620
Query: 528 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 575
+ WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 621 -------VSRWEYYDSVYTER---YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHG 670
Query: 576 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 608
D V + + A+ L ++ D + + E
Sbjct: 671 TADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 703
>pdb|1R9N|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
Length = 739
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 468 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 527
D I A K + +++ I G S GG + VL +FK +A P
Sbjct: 578 DQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP--------- 628
Query: 528 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 575
+ WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 629 -------VSRWEYYDSVYTER---YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHG 678
Query: 576 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 608
D V + + A+ L ++ D + + E
Sbjct: 679 TADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 711
>pdb|1J2E|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
pdb|1J2E|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
pdb|1WCY|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (dppiv)
Complex With Diprotin A
pdb|1WCY|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (dppiv)
Complex With Diprotin A
pdb|3VJM|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #1
pdb|3VJM|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #1
pdb|3VJK|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With Mp-513
pdb|3VJK|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With Mp-513
pdb|3VJL|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #2
pdb|3VJL|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #2
Length = 740
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 468 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 527
D I A K + +++ I G S GG + VL +FK +A P
Sbjct: 573 DQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP--------- 623
Query: 528 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 575
+ WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 624 -------VSRWEYYDSVYTER---YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHG 673
Query: 576 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 608
D V + + A+ L ++ D + + E
Sbjct: 674 TADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 706
>pdb|4A5S|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A Noval
Heterocyclic Dpp4 Inhibitor
pdb|4A5S|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A Noval
Heterocyclic Dpp4 Inhibitor
Length = 740
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 468 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 527
D I A K + +++ I G S GG + VL +FK +A P
Sbjct: 567 DQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP--------- 617
Query: 528 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 575
+ WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 618 -------VSRWEYYDSVYTER---YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHG 667
Query: 576 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 608
D V + + A+ L ++ D + + E
Sbjct: 668 TADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 700
>pdb|2QT9|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QT9|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QTB|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QTB|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
Length = 766
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 31/153 (20%)
Query: 468 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 527
D I A K + +++ I G S GG + VL +FK +A P
Sbjct: 605 DQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP--------- 655
Query: 528 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 575
+ WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 656 -------VSRWEYYDSVYTER---YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHG 705
Query: 576 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 608
D V + + A+ L ++ D + + E
Sbjct: 706 TADDNVHFQQSAQISKALVDVGVDFQAMWYTDE 738
>pdb|1ORV|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORW|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|2BUA|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUC|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2AJ8|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJB|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJC|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJD|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
Length = 728
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 56/153 (36%), Gaps = 31/153 (20%)
Query: 468 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 527
D I K + +++ I G S GG + VL +FK +A P
Sbjct: 567 DQIEATRQFSKMGFVDDKRIAIWGWSYGGYVTSMVLGAGSGVFKCGIAVAP--------- 617
Query: 528 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV----------KAQNYPHI--LVTAG 575
++WE + + E YM +P DN+ +A+N+ + L+ G
Sbjct: 618 -------VSKWEYYDSVYTER---YMGLPTPEDNLDYYRNSTVMSRAENFKQVEYLLIHG 667
Query: 576 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 608
D V + + A+ L + D + + E
Sbjct: 668 TADDNVHFQQSAQLSKALVDAGVDFQTMWYTDE 700
>pdb|2GOP|A Chain A, The Beta-Propeller Domain Of The Trilobed Protease From
Pyrococcus Furiosus Reveals An Open Velcro Topology
pdb|2GOP|B Chain B, The Beta-Propeller Domain Of The Trilobed Protease From
Pyrococcus Furiosus Reveals An Open Velcro Topology
Length = 347
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 61 DAPPEHLILDENVKAEGRGFYSVGCF-QVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTP 119
D E+ I+ EN+K R F ++SPD K +A+ + ++ ++V D+ET +
Sbjct: 38 DNKYENTIVIENLKNNARRFIENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSS 97
Query: 120 VGKPLVGVTASVEW 133
S+EW
Sbjct: 98 KKILEAKNIRSLEW 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,512,709
Number of Sequences: 62578
Number of extensions: 918455
Number of successful extensions: 2054
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1945
Number of HSP's gapped (non-prelim): 63
length of query: 648
length of database: 14,973,337
effective HSP length: 105
effective length of query: 543
effective length of database: 8,402,647
effective search space: 4562637321
effective search space used: 4562637321
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)