BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006376
(648 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PFT|A Chain A, The Crystal Structure Of Mouse Exo70 Reveals Unique
Features Of The Mammalian Exocyst
Length = 571
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 88/181 (48%), Gaps = 16/181 (8%)
Query: 474 LESKLHEKSKMYKDVSLQHIFLMNNIHYMAQKVKNSEL-RLIFGDNWIRKHNWK--FQQH 530
L+ L KSK+Y+D +L IFL NN +Y+ + ++ SEL +L+ + +++ +Q
Sbjct: 392 LQLNLLSKSKVYEDPALSAIFLHNNYNYILKSLEKSELIQLVAVTQKTAERSYREHIEQQ 451
Query: 531 AMDYERATWSSI--------LPLLKDDGNSGSSSVSKLKERFKNFYLAFEEVYKTQSAWV 582
Y+R +W + LP+ + +KERFK F EE+ K Q W
Sbjct: 452 IQTYQR-SWLKVTDYIAEKNLPVFQPGVKLRDKERQMIKERFKGFNDGLEELCKIQKVWA 510
Query: 583 IPNVHLREDLRISISLKVIQAYRTFESRHKN----QISDKHIKYSADDLQSYLLDLFEGS 638
IP+ R+ +R + V + Y F R+ + + +K+IKY + + + LF+ S
Sbjct: 511 IPDTEQRDKIRQAQKDIVKETYGAFLHRYGSVPFTKNPEKYIKYRVEQVGDMIDRLFDTS 570
Query: 639 S 639
+
Sbjct: 571 A 571
>pdb|2B1E|A Chain A, The Structures Of Exocyst Subunit Exo70p And The Exo84p C-
Terminal Domains Reveal A Common Motif
Length = 564
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 10/146 (6%)
Query: 494 FLMNNIHYMAQKVKNSELRLIF-GDNWIRKHNWKFQQHAMDYERATWSSILPLLKDD--- 549
F++ N+ + Q V+ SEL L+ G+ R + ++ + Y + W + L D
Sbjct: 416 FILMNLTLVEQIVEKSELNLMLAGEGHSRLE--RLKKRYISYMVSDWRDLTANLMDSVFI 473
Query: 550 GNSGSSSVSK--LKERFKNFYLAFEEVYKTQSAWVIPNVHLREDLRISISLKVIQAYRTF 607
+SG S K +KE+F+ F FE++ + + + L+ L+ I V+ Y F
Sbjct: 474 DSSGKKSKDKEQIKEKFRKFNEGFEDLVSKTKQYKLSDPSLKVTLKSEIISLVMPMYERF 533
Query: 608 ESRHKNQISD--KHIKYSADDLQSYL 631
SR+K+ + KHIKY+ D+L + L
Sbjct: 534 YSRYKDSFKNPRKHIKYTPDELTTVL 559
>pdb|2PFV|A Chain A, S. Cerevisiae Exo70 With Additional Residues To 2.1
Angrstrom Resolution
Length = 563
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 10/146 (6%)
Query: 494 FLMNNIHYMAQKVKNSELRLIF-GDNWIRKHNWKFQQHAMDYERATWSSILPLLKDD--- 549
F++ N+ + Q V+ SEL L+ G+ R + ++ + Y + W + L D
Sbjct: 415 FILMNLTLVEQIVEKSELNLMLAGEGHSRLE--RLKKRYISYMVSDWRDLTANLMDSVFI 472
Query: 550 GNSGSSSVSK--LKERFKNFYLAFEEVYKTQSAWVIPNVHLREDLRISISLKVIQAYRTF 607
+SG S K +KE+F+ F FE++ + + + L+ L+ I V+ Y F
Sbjct: 473 DSSGKKSKDKEQIKEKFRKFNEGFEDLVSKTKQYKLSDPSLKVTLKSEIISLVMPMYERF 532
Query: 608 ESRHKNQISD--KHIKYSADDLQSYL 631
SR+K+ + KHIKY+ D+L + L
Sbjct: 533 YSRYKDSFKNPRKHIKYTPDELTTVL 558
>pdb|2B7M|A Chain A, Crystal Structure Of The S. Cerevisiae Exocyst Component
Exo70p
pdb|2B7M|B Chain B, Crystal Structure Of The S. Cerevisiae Exocyst Component
Exo70p
pdb|2B7M|C Chain C, Crystal Structure Of The S. Cerevisiae Exocyst Component
Exo70p
pdb|2B7M|D Chain D, Crystal Structure Of The S. Cerevisiae Exocyst Component
Exo70p
Length = 566
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 10/146 (6%)
Query: 494 FLMNNIHYMAQKVKNSELRL-IFGDNWIRKHNWKFQQHAMDYERATWSSILPLLKDD--- 549
F++ N+ + Q V+ SEL L + G+ R + ++ + Y + W + L D
Sbjct: 418 FILXNLTLVEQIVEKSELNLXLAGEGHSRLE--RLKKRYISYXVSDWRDLTANLXDSVFI 475
Query: 550 GNSGSSSVSK--LKERFKNFYLAFEEVYKTQSAWVIPNVHLREDLRISISLKVIQAYRTF 607
+SG S K +KE+F+ F FE++ + + + L+ L+ I V Y F
Sbjct: 476 DSSGKKSKDKEQIKEKFRKFNEGFEDLVSKTKQYKLSDPSLKVTLKSEIISLVXPXYERF 535
Query: 608 ESRHKNQISD--KHIKYSADDLQSYL 631
SR+K+ + KHIKY+ D+L + L
Sbjct: 536 YSRYKDSFKNPRKHIKYTPDELTTVL 561
>pdb|2CWX|A Chain A, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 1 Crystal)
pdb|2CWX|E Chain E, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 1 Crystal)
pdb|2CXE|A Chain A, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2CXE|B Chain B, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2CXE|C Chain C, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2CXE|D Chain D, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2D69|A Chain A, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
pdb|2D69|B Chain B, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
pdb|2D69|D Chain D, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
pdb|2D69|E Chain E, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
Length = 430
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 522 KHNWKFQQHA-MDYERATWSSILPLLKDDGNSGSSSVSKLKERFKNFY 568
K W +++A + YE WS + LLKDD N S ++ +ER + Y
Sbjct: 162 KMGWSVEEYAEIAYE--LWSGGIDLLKDDENFTSFPFNRFEERVRKLY 207
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,071,030
Number of Sequences: 62578
Number of extensions: 649937
Number of successful extensions: 1692
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1679
Number of HSP's gapped (non-prelim): 17
length of query: 648
length of database: 14,973,337
effective HSP length: 105
effective length of query: 543
effective length of database: 8,402,647
effective search space: 4562637321
effective search space used: 4562637321
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)