Query 006376
Match_columns 648
No_of_seqs 239 out of 493
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 23:23:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006376.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006376hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pft_A Exocytosis protein; hel 100.0 2E-102 6E-107 883.9 35.7 518 70-639 2-571 (571)
2 2b1e_A Exocyst complex compone 100.0 2E-96 7E-101 830.9 40.0 524 59-635 1-563 (564)
3 1zva_A E2 glycoprotein; membra 44.7 16 0.00054 28.9 3.0 36 19-54 14-50 (77)
4 2x5h_A ORF 131; viral protein; 42.9 4.8 0.00016 32.4 -0.2 19 605-624 78-96 (97)
5 4e9f_A Methyl-CPG-binding doma 25.3 37 0.0013 31.1 2.7 35 598-634 47-81 (161)
6 3nft_A Translocator protein BI 22.7 98 0.0033 30.9 5.2 50 584-634 119-187 (303)
7 1ji8_A Dissimilatory siroheme- 21.6 35 0.0012 29.3 1.6 40 599-639 54-94 (111)
8 2pco_A Latarcin-1, LTC-1; cont 19.7 66 0.0023 20.0 2.1 17 560-576 7-23 (26)
9 2ket_A Cathelicidin-6; antimic 19.3 66 0.0023 19.5 2.0 17 563-579 2-18 (27)
10 3l39_A Putative PHOU-like phos 19.2 4.3E+02 0.015 25.0 9.2 95 14-111 36-152 (227)
No 1
>2pft_A Exocytosis protein; helix-turn-helix, endocytosis-exocytosis complex; 2.25A {Mus musculus}
Probab=100.00 E-value=1.9e-102 Score=883.93 Aligned_cols=518 Identities=20% Similarity=0.302 Sum_probs=436.7
Q ss_pred HHHHHHhcccCc---cccccCChhcHHHHHHHHHHHHHHHHHhhccCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006376 70 VQEKILSREADQ---SMIWDSGPDEASEYLNAADEARKLIERLDGLCLEKNGHEKELLRKAHDVLQMAMNRLEEEFRHIL 146 (648)
Q Consensus 70 ~e~~i~~~~~~~---~~i~~~~~~~~~~yL~av~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~Ll~~am~~Le~eF~~lL 146 (648)
||+++++||... ..||+||+.++.+||+||++|++++++|.++++++ ..+.++++|+++||.+||+||++||
T Consensus 2 ae~v~~~~d~~~~~e~~i~~gp~~~l~~yL~av~~l~~a~~~~~~~~~~s-----~~l~~~~~Ll~~a~~~Le~eF~~lL 76 (571)
T 2pft_A 2 SDHVISYYHVASDTEKIIREGPTGRLEEYLGSMAKIQKAVEYFQDNSPDS-----PELNKVKLLFERGKESLESEFRSLM 76 (571)
T ss_dssp -CTTSTHHHHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHSTTC-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchhhhhhhhcCcHhhHHHHHHHHHHHHHHHHHHHhcCCCh-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999987 67788999999999999999999999999766543 2599999999999999999999999
Q ss_pred hccCCCCCCCccc--CCCcchhhccccccccCCCCCcccccccccCCCCCCccccccccCCCCcHHHHHHHHHHHHhCCC
Q 006376 147 VQNRQPFEPEHMS--FRSSEEDIMDESSIISYGDDSISIDDSFQRDSVSRTSEEFIVHLVRADVIPDLRCIANLMFLSNY 224 (648)
Q Consensus 147 ~~~~~~~~p~~~~--~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~Ia~~m~~~g~ 224 (648)
.+++.|+||.... .++ +..|+ . .....++.+||+++++|+.||++|+.+||
T Consensus 77 ~~~~~~~~p~~ll~~~~~-------~~~~~---------~-----------~~~~~~~~~~~~~~~~L~~Ia~~m~~~g~ 129 (571)
T 2pft_A 77 TRHSKVVSPVLLLDLISA-------DDELE---------V-----------QEDVVLEHLPESVLRDVVRISRWLVEYGR 129 (571)
T ss_dssp HHHCCCCCHHHHHHHHHH-------TCCCC----------------------------SSCHHHHHHHHHHHHHHHHHCS
T ss_pred HhcCcCCChHHHHhcccc-------ccccC---------c-----------cccccccCCCHHHHHHHHHHHHHHHHcCC
Confidence 9999999997431 000 00000 0 01122567999999999999999999999
Q ss_pred chHHHHHHHHhhHHHHHHHHHhhc------------------------cccCcHHHhhhhchhhhhHHHHHHHHHHHHHH
Q 006376 225 DHECCQAYVMARKDALDECLFILE------------------------MEKLSIEDVLKMEWGHLNSKIKRWVWALKIFV 280 (648)
Q Consensus 225 ~~e~~~~Y~~~R~~~l~~sL~~L~------------------------~~~~~~e~v~k~~w~~~~~~i~~wi~a~~~~v 280 (648)
.++|+++|+++|++++++||..|+ .++.++.++++ +|+.++.+|+.|++++.+++
T Consensus 130 ~~~~~~~Y~~~R~~~l~~sL~~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~i~~wi~~~~~~~ 208 (571)
T 2pft_A 130 NQDFMNVYYQIRSSQLDRSIKGLKEHFRKSSSSSGVPYSPAIPNKRKDTPTKKPIKRPG-RDDMLDVETDAYIHCVSAFV 208 (571)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------------------CHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccccccc-chHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999994 33444444544 89999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCcchhhhHHHHHHHHHHHHHHHHHHHh-cCCCCc--hhhhhhhhHHHH---HHhhHHHHHHh
Q 006376 281 RSYLASEKFLSEQIFGEFEPVNVSCFVEASKASMLQLLNFGEAVS-IGPHKP--EKLFCILDMYEV---LADLLSDIDAL 354 (648)
Q Consensus 281 k~L~~~E~~L~~~vf~~~~~~~~~~F~~i~~~~~~~ll~f~~~va-~~~~~p--eklf~lLdm~e~---L~~l~p~~~~l 354 (648)
+ ||++||+||++||++ ..+..||.+||++++.+|++|+++|+ ..+|+| +++|.+++||++ |.+++|+|+.+
T Consensus 209 ~-l~~~Er~L~~~vf~~--~~~~~~F~~i~~~~~~~ll~f~e~v~~~~kr~~~~~~~~~~l~l~~~l~~l~~l~p~~~~~ 285 (571)
T 2pft_A 209 K-LAQSEYRLLMEIIPE--HHQKKTFDSLIQDALDGLMLEGENIVSAARKAIIRHDFSTVLTVFPILRHLKQTKPEFDQV 285 (571)
T ss_dssp H-HHHHHHHHHHHHSCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTTTHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHcCc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 899999999999987 35889999999999999999999997 467777 666666655555 99999999999
Q ss_pred hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCC-CCcccccHHHHHHHHHHHhhcHHHHHHHHhcCC
Q 006376 355 YADKIGSSVRIEYYEVLRRVGDSVRGTFMEFENAIASYT-ASNPFA-GGGVLHLTKYVMNYLRTLTDYTETLNLLLRNHD 432 (648)
Q Consensus 355 f~~~~~~~~~~~~~~~l~~L~~~~~~~f~ef~~~I~~~~-s~~~~~-dG~Vh~lT~~vmnyl~~L~~y~~~L~~il~~~~ 432 (648)
|+|+.+ .++.++.+++++|+++++++|.||++.|++++ ++.++| ||+|||+|+||||||+.|++|+++|+.+|....
T Consensus 286 f~g~~~-~~~~~~~~~l~~L~~~~~~~f~ef~~~i~~~~~s~~~vp~dg~Vh~lT~~vmnyl~~L~~y~~~l~~il~~~~ 364 (571)
T 2pft_A 286 LQGTAA-STKNKLPGLITSMETIGAKALEDFADNIKNDPDKEYNMPKDGTVHELTSNAILFLQQLLDFQETAGAMLASQE 364 (571)
T ss_dssp TTTSCH-HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSGGGSCTTCCCCHHHHHHHHHHHHHHHTHHHHHHHHHTTC
T ss_pred HccCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCccchHHHHHHHHHHHHHhhHHHHHHHHhccC
Confidence 999876 57999999999999999999999999999997 666665 999999999999999999999999999998753
Q ss_pred CCCCCCCccCCCcchhhhhhcCCCCCCCChHHHHHHHHHHHHHHHHHhhhccccccccchhhhhhhHHHHHHHhhcchhh
Q 006376 433 KEDPSSAPANMNSALEEESLSGSLTSNFSPMAIRYRSVTSILESKLHEKSKMYKDVSLQHIFLMNNIHYMAQKVKNSELR 512 (648)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~~i~~ii~~L~~~Le~Ksk~y~d~aL~~iFLmNN~~yI~~~v~~SeL~ 512 (648)
+. +. + ...++. ++.++|+.+|.++|++|+.|||.||+.|+|++|++||||||+|||+++|++|+|.
T Consensus 365 ~~--~~-~----~~~~~~-------~~~~~l~~~i~~ii~~L~~~Le~ksk~y~d~~l~~iFLmNN~~yI~~~v~~s~l~ 430 (571)
T 2pft_A 365 TS--SS-A----TSYSSE-------FSKRLLSTYICKVLGNLQLNLLSKSKVYEDPALSAIFLHNNYNYILKSLEKSELI 430 (571)
T ss_dssp ---------------CHH-------HHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHTTTTTSTHH
T ss_pred CC--cc-c----ccCCCC-------CcccHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHhhHHHHHHHHhccchH
Confidence 21 00 0 000000 1346899999999999999999999999999999999999999999999999999
Q ss_pred hhhc---hHHHHHHHHHHHHHHHHHHHhhHHhhhhhhccCCCC----CC--Cchhh--hHHHHHHHHHHHHHHHHhccce
Q 006376 513 LIFG---DNWIRKHNWKFQQHAMDYERATWSSILPLLKDDGNS----GS--SSVSK--LKERFKNFYLAFEEVYKTQSAW 581 (648)
Q Consensus 513 ~lLG---~~w~~~~~~~i~~~~~~Y~~~sW~~vl~~L~~~~~~----~~--~~~~k--iKekfk~FN~~Fee~~~~Q~~w 581 (648)
.+|| ++|+++++.+++||++.| +++|++|++||.+++.+ |+ ++++| +||||++||++|||+|++|++|
T Consensus 431 ~llg~~~~~~~~~~~~~i~~~~~~Y-~~sW~~v~~~L~~~~~~~~~~g~~ls~~~r~~iKe~fk~Fn~~Fee~~~~q~~w 509 (571)
T 2pft_A 431 QLVAVTQKTAERSYREHIEQQIQTY-QRSWLKVTDYIAEKNLPVFQPGVKLRDKERQMIKERFKGFNDGLEELCKIQKVW 509 (571)
T ss_dssp HHHHTTCTTHHHHHHHHHHHHHHHH-HGGGHHHHTTTSGGGSCSSCCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhCcchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhccCCcCCCCCCcCcccHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 9999 689999999999999999 89999999999997642 21 34566 9999999999999999999999
Q ss_pred eccChhHHHHHHHHHHHHHHHHHHHHHHHhcccc----CCCccccCHHHHHHHHhhhhCCCC
Q 006376 582 VIPNVHLREDLRISISLKVIQAYRTFESRHKNQI----SDKHIKYSADDLQSYLLDLFEGSS 639 (648)
Q Consensus 582 ~VpD~~LR~~Lr~~i~~~ViPaY~~F~~ry~~~~----~~KyiKYtpe~Le~~L~~LFeg~~ 639 (648)
+||||+||++||.+|+++|+|+|++||+||++.. ++|||||||++||++|++||+|+.
T Consensus 510 ~VpD~~LR~~Lr~~i~~~v~paY~~F~~r~~~~~~~k~~~KyiKytpe~le~~L~~LFeg~a 571 (571)
T 2pft_A 510 AIPDTEQRDKIRQAQKDIVKETYGAFLHRYGSVPFTKNPEKYIKYRVEQVGDMIDRLFDTSA 571 (571)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCSCHHHHCCCCHHHHHHHHHTSSSCC-
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCCCCccccCHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999842 779999999999999999999963
No 2
>2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A
Probab=100.00 E-value=2e-96 Score=830.90 Aligned_cols=524 Identities=19% Similarity=0.230 Sum_probs=430.0
Q ss_pred chhhHHHHHHHHHHHHHhcccCc--ccccc-CCh-hcHHHHHHHHHHHHHHHHHhhccCcccCc--chHHHHHHHHHHHH
Q 006376 59 GVSEIEEQLNIVQEKILSREADQ--SMIWD-SGP-DEASEYLNAADEARKLIERLDGLCLEKNG--HEKELLRKAHDVLQ 132 (648)
Q Consensus 59 ~~~nie~~l~~~e~~i~~~~~~~--~~i~~-~~~-~~~~~yL~av~~l~~~~~~l~~~~~~~~~--~~~~~l~~~~~Ll~ 132 (648)
.++|||+++++|++|.++++.++ +.|++ ||. .++..||+||++|++++++|+++++++++ ++++++.++.+|++
T Consensus 1 ~~~NId~~l~~i~~v~~~~~~~~~~e~iI~~Gp~~~~l~~Yl~al~rl~~al~~~~~~n~~s~e~~~f~g~l~~~~~L~~ 80 (564)
T 2b1e_A 1 GHMNIESTLNSVASVKDLANEASKYEIILQKGINQVGLKQYTQVVHKLDDMLEDIQSGQANREENSEFHGILTHLEQLIK 80 (564)
T ss_dssp -------CCGGGCCHHHHHHHHHHHHHHHHTCHHHHCHHHHHHHHHHHHHHHHHHHC----CCCSHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhHHHHHHHHHHHH
Confidence 37899999999999999999877 55555 775 99999999999999999999998887764 46789999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCcccCCCcchhhccccccccCCCCCcccccccccCCCCCCccccccccCCCCcHHHH
Q 006376 133 MAMNRLEEEFRHILVQNRQPFEPEHMSFRSSEEDIMDESSIISYGDDSISIDDSFQRDSVSRTSEEFIVHLVRADVIPDL 212 (648)
Q Consensus 133 ~am~~Le~eF~~lL~~~~~~~~p~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L 212 (648)
+|+.+||.||+.||. ++.|+||.++ + + ++.|+|.+|++++.+|
T Consensus 81 ~g~~~L~~~F~~lL~-~s~p~~p~~~----------------------i--~------------k~~p~p~l~~~~l~~L 123 (564)
T 2b1e_A 81 RSEAQLRVYFISILN-SIKPFDPQIN----------------------I--T------------KKMPFPYYEDQQLGAL 123 (564)
T ss_dssp HHHHHHHHHHHHHHT-TSCCCCHHHH----------------------H--H------------HTCCCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-hCCCCCHHHh----------------------h--c------------cCCCCCCCCHHHHHHH
Confidence 999999999999999 5899998743 1 1 2356788999999999
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhhHHHHHHHHHhhccccCcHHHhhhhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006376 213 RCIANLMFLSNYDHECCQAYVMARKDALDECLFILEMEKLSIEDVLKMEWGHLNSKIKRWVWALKIFVRSYLASEKFLSE 292 (648)
Q Consensus 213 ~~Ia~~m~~~g~~~e~~~~Y~~~R~~~l~~sL~~L~~~~~~~e~v~k~~w~~~~~~i~~wi~a~~~~vk~L~~~E~~L~~ 292 (648)
+.||+||+++|+.++|+++|+++|+++|++||+.|+....++...++++|++++++|..|++|+.. ||++|+.||+
T Consensus 124 ~~Ia~~m~~~g~~~~~~~iY~~~R~~~l~~sL~~L~~~~k~~~~~~~~~~e~~~~~i~~~~~a~~~----l~~~E~~L~~ 199 (564)
T 2b1e_A 124 SWILDYFHGNSEGSIIQDILVGERSKLILKCMAFLEPFAKEISTAKNAPYEKGSSGMNSYTEALLG----FIANEKSLVD 199 (564)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTTSTTCC------------CCSTHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCchhhhccHHHHHHHHHHH----HHHHHHHHHH
Confidence 999999999999999999999999999999999997766666777889999999999999999854 7889999999
Q ss_pred hhcCCCCcchhhhHHHHHHHHHH---HHHHHHHHHhcCCCCc-hhhhhhhhHHHHHHhhHHHHHHhhccccchhHHHHHH
Q 006376 293 QIFGEFEPVNVSCFVEASKASML---QLLNFGEAVSIGPHKP-EKLFCILDMYEVLADLLSDIDALYADKIGSSVRIEYY 368 (648)
Q Consensus 293 ~vf~~~~~~~~~~F~~i~~~~~~---~ll~f~~~va~~~~~p-eklf~lLdm~e~L~~l~p~~~~lf~~~~~~~~~~~~~ 368 (648)
+||+..++.+..||.+||++++. .+++|..++ .+++| +++|.+||||++|.++. .+|.|..+.. +.++.
T Consensus 200 ~vf~~~~~~~~~~f~~i~~~~l~~~~~~l~~~~~~--~k~~~~~~~f~~l~~~~~l~~~~----~~~~~~~~~~-~~~~~ 272 (564)
T 2b1e_A 200 DLYSQYTESKPHVLSQILSPLISAYAKLFGANLKI--VRSNLENFGFFSFELVESINDVK----KSLRGKELQN-YNLLQ 272 (564)
T ss_dssp HHSCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHC--CC-----CCTHHHHHHHHHHHHH----HHTTTCCCTT-HHHHH
T ss_pred HHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH--HhcChhhcchhHHHHHHHHHHHH----HHHcccccch-HHHHH
Confidence 99999777799999999999998 445555443 46777 89999999999998766 7888877655 49999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCC--CCCCcccccHHHHHHHHHHHhhcHHHHHHHHhcCC--CCCCCCCccCCC
Q 006376 369 EVLRRVGDSVRGTFMEFENAIASYTASNP--FAGGGVLHLTKYVMNYLRTLTDYTETLNLLLRNHD--KEDPSSAPANMN 444 (648)
Q Consensus 369 ~~l~~L~~~~~~~f~ef~~~I~~~~s~~~--~~dG~Vh~lT~~vmnyl~~L~~y~~~L~~il~~~~--~~~~~~~~~~~~ 444 (648)
+++++|+++++++|.||++.|++++++.+ |+||||||+|+||||||+.|++|+++|..++.+.+ +|.+...+...
T Consensus 273 ~~l~~L~~~~~~~~~ef~~~i~~~~~~~~~~p~dG~Vh~lT~~vmnyl~~l~~y~~~l~~~l~~~~~~~~~~~~~~~~~- 351 (564)
T 2b1e_A 273 DCTQEVRQVTQSLFRDAIDRIIKKANSISTIPSNNGVTEATVDTMSRLRKFSEYKNGCLGAMDNITRENWLPSNYKEKE- 351 (564)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCTTCCCCHHHHHHHHHHHHHGGGHHHHHHHTTTCCGGGTSCTTCCGGG-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcccHHHHHHHHHHHHHHhhHHHHHHHHHhccccCCCcccccccc-
Confidence 99999999999999999999999876433 68999999999999999999999999999998643 45442111100
Q ss_pred cchhhhhhcCCCCCCCChHHHHHHHHHHHHHHHHHhh------------------hccccccccchhhhhhhHHHHHHHh
Q 006376 445 SALEEESLSGSLTSNFSPMAIRYRSVTSILESKLHEK------------------SKMYKDVSLQHIFLMNNIHYMAQKV 506 (648)
Q Consensus 445 ~~~~~~~~~~~~~~~~s~l~~~i~~ii~~L~~~Le~K------------------sk~y~d~aL~~iFLmNN~~yI~~~v 506 (648)
.+.+... ..+.++.++|+++|.++|++|+.|||+| |+.|+|++++ +|||||+|||+++|
T Consensus 352 ~~~~~~~--~~~~~~~~~l~~~i~~~i~~L~~~Le~ka~~~~~~~~~~~l~~~~ss~~~~d~~l~-~FllNN~~yI~~~v 428 (564)
T 2b1e_A 352 YTLQNEA--LNWEDHNVLLSCFISDCIDTLAVNLERKAQIALMPNQEPDVANPNSSKNKHKQRIG-FFILMNLTLVEQIV 428 (564)
T ss_dssp SCCCC------CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCCCSCTTCSSCTTHHHHH-HHHHHHHHHHHHHH
T ss_pred ccccccc--ccCCCccchHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhhhcCHHHHH-HHHHHhHHHHHHHH
Confidence 0000000 0112345689999999999999999999 4679999985 69999999999999
Q ss_pred hcchhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhccCCC--CCC-Cchhh--hHHHHHHHHHHHHHHHHhccce
Q 006376 507 KNSELRLIFGDNWIRKHNWKFQQHAMDYERATWSSILPLLKDDGN--SGS-SSVSK--LKERFKNFYLAFEEVYKTQSAW 581 (648)
Q Consensus 507 ~~SeL~~lLG~~w~~~~~~~i~~~~~~Y~~~sW~~vl~~L~~~~~--~~~-~~~~k--iKekfk~FN~~Fee~~~~Q~~w 581 (648)
++|+|..+||++|+++|+.++++|+ .|++++|++|++||.+++. +++ ++++| +||||++||++|||+|++|++|
T Consensus 429 ~~SeL~~lLg~~~~~~~~~~~~~~~-~y~~~sW~~v~~~L~~~~~~~~~~ks~~~k~~iKe~fk~FN~~Fee~~~~q~~w 507 (564)
T 2b1e_A 429 EKSELNLMLAGEGHSRLERLKKRYI-SYMVSDWRDLTANLMDSVFIDSSGKKSKDKEQIKEKFRKFNEGFEDLVSKTKQY 507 (564)
T ss_dssp HTSTHHHHTTTHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhhHhHhcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccccCCCCCCccccHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999995 9999999999999998763 222 34566 9999999999999999999999
Q ss_pred eccChhHHHHHHHHHHHHHHHHHHHHHHHhcccc--CCCccccCHHHHHHHHhhhh
Q 006376 582 VIPNVHLREDLRISISLKVIQAYRTFESRHKNQI--SDKHIKYSADDLQSYLLDLF 635 (648)
Q Consensus 582 ~VpD~~LR~~Lr~~i~~~ViPaY~~F~~ry~~~~--~~KyiKYtpe~Le~~L~~LF 635 (648)
+||||+||++||++|+++|+|+|++||+||+... ++|||||||++||++|++|+
T Consensus 508 ~vpD~~LR~~Lr~~i~~~v~P~Y~~F~~ry~~~~k~~~KyiKytpe~le~~l~~L~ 563 (564)
T 2b1e_A 508 KLSDPSLKVTLKSEIISLVMPMYERFYSRYKDSFKNPRKHIKYTPDELTTVLNQLV 563 (564)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSSSGGGTCSCCHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccCCHHHHHHHHHHhc
Confidence 9999999999999999999999999999999854 89999999999999999996
No 3
>1zva_A E2 glycoprotein; membrane fusion, virus entry, coiled C conformational change, viral protein; 1.50A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_B
Probab=44.74 E-value=16 Score=28.88 Aligned_cols=36 Identities=25% Similarity=0.391 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhh-hhhHHHHHHHHHhhhhhhhhccc
Q 006376 19 AAAEHLVRALGSN-KNLTSNMKRVLADLGSQLSTMAT 54 (648)
Q Consensus 19 a~~~~l~~~L~~s-~~lt~~~~~~l~~~d~rl~~~~~ 54 (648)
++..++...|.++ ..++..|..|.+++|.||+.+..
T Consensus 14 ~aL~~L~~qL~~NFgAISSsi~dIy~rLdGRlaaLna 50 (77)
T 1zva_A 14 QALNTLVKQLSSNFGAISSVLNDISGGRGGDISGINA 50 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcchHHHHHH
Confidence 5667788888888 66889999999999999998875
No 4
>2x5h_A ORF 131; viral protein; 1.80A {Sulfolobus islandicus rudivirus 1} PDB: 2x5g_A* 2x5t_A
Probab=42.94 E-value=4.8 Score=32.42 Aligned_cols=19 Identities=11% Similarity=0.371 Sum_probs=10.9
Q ss_pred HHHHHHhccccCCCccccCH
Q 006376 605 RTFESRHKNQISDKHIKYSA 624 (648)
Q Consensus 605 ~~F~~ry~~~~~~KyiKYtp 624 (648)
..|+++|.+.. +|||||||
T Consensus 78 a~FLeKYS~~L-nkYVkF~~ 96 (97)
T 2x5h_A 78 AEFLEKYSDFL-NEYVKFTP 96 (97)
T ss_dssp HHHHHHTHHHH-HHHC----
T ss_pred HHHHHHHHHHH-HHhhcccc
Confidence 57888887654 67889886
No 5
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=25.25 E-value=37 Score=31.11 Aligned_cols=35 Identities=14% Similarity=0.095 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhccccCCCccccCHHHHHHHHhhh
Q 006376 598 LKVIQAYRTFESRHKNQISDKHIKYSADDLQSYLLDL 634 (648)
Q Consensus 598 ~~ViPaY~~F~~ry~~~~~~KyiKYtpe~Le~~L~~L 634 (648)
+.|.|+|.+|+++|.. ++...+-++++|+.+|..+
T Consensus 47 ~~v~~~~~~l~~~~pt--~~~la~a~~~el~~~i~~l 81 (161)
T 4e9f_A 47 KMAIPVLWKFLEKYPS--AEVARTADWRDVSELLKPL 81 (161)
T ss_dssp HHHHHHHHHHHHHSCS--HHHHTTSCHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHCCC--HHHHhccChHhHHhHhhhc
Confidence 3688999999999986 5566778999999998876
No 6
>3nft_A Translocator protein BIPD; virulence, translocation, transport protein; 1.51A {Burkholderia pseudomallei} PDB: 2ixr_A 2j9t_A* 2izp_A
Probab=22.70 E-value=98 Score=30.93 Aligned_cols=50 Identities=14% Similarity=0.310 Sum_probs=0.0
Q ss_pred cChhHHHHHHHHHHHH---------HHHHHHHHHHHhcccc----------CCCccccCHHHHHHHHhhh
Q 006376 584 PNVHLREDLRISISLK---------VIQAYRTFESRHKNQI----------SDKHIKYSADDLQSYLLDL 634 (648)
Q Consensus 584 pD~~LR~~Lr~~i~~~---------ViPaY~~F~~ry~~~~----------~~KyiKYtpe~Le~~L~~L 634 (648)
|||-| +.|...|... |+-.|..||+-|.... -+|.||+.+..+.+-|+++
T Consensus 119 ~~p~~-~~L~d~I~ngkdYlDvYa~IVk~YTdyyQdfNe~LSKlSd~IsAkDGN~IKFD~~sfk~~l~~l 187 (303)
T 3nft_A 119 PDPIL-QGLVDVIGQGKSDIDAYATIVEGLTKYFQSVADVMSKLQDYISAKDDKNMKIDGGKIKALIQQV 187 (303)
T ss_dssp CCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGEEEETTTEEEECHHHHHHHHHHH
T ss_pred CChHH-HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCeeeecHHHHHHHHHHH
No 7
>1ji8_A Dissimilatory siroheme-sulfite reductase; orthogonal helical bundle, structural genomics, PSI, protein structure initiative; NMR {Pyrobaculum aerophilum} SCOP: d.203.1.1
Probab=21.55 E-value=35 Score=29.35 Aligned_cols=40 Identities=15% Similarity=0.181 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhcccc-CCCccccCHHHHHHHHhhhhCCCC
Q 006376 599 KVIQAYRTFESRHKNQI-SDKHIKYSADDLQSYLLDLFEGSS 639 (648)
Q Consensus 599 ~ViPaY~~F~~ry~~~~-~~KyiKYtpe~Le~~L~~LFeg~~ 639 (648)
.||-.-|.||.+|+... -+.-+|+....+.. |-+||-+.+
T Consensus 54 ~VI~flR~~Y~e~~~~P~iR~l~K~~~~~~s~-Ly~LFP~GP 94 (111)
T 1ji8_A 54 KLVKYLREYWETFGTCPPIKMVTKETGFSLEK-IYQLFPSGP 94 (111)
T ss_dssp HHHHHHHHHTTTTSCCCCSTTGGGGSCCCHHH-HHHHTTSCH
T ss_pred HHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHH-HHHHCCCCH
Confidence 57788899999999764 45567777777766 999996543
No 8
>2pco_A Latarcin-1, LTC-1; continuous helix, toxin; NMR {Synthetic}
Probab=19.71 E-value=66 Score=20.04 Aligned_cols=17 Identities=18% Similarity=0.327 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHH
Q 006376 560 LKERFKNFYLAFEEVYK 576 (648)
Q Consensus 560 iKekfk~FN~~Fee~~~ 576 (648)
+|++||.|-.+|-+-..
T Consensus 7 ~keklKkf~~~lk~k~~ 23 (26)
T 2pco_A 7 WRRKLKKLRNALKKKLK 23 (26)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 89999999999876543
No 9
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=19.32 E-value=66 Score=19.52 Aligned_cols=17 Identities=41% Similarity=0.747 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHhcc
Q 006376 563 RFKNFYLAFEEVYKTQS 579 (648)
Q Consensus 563 kfk~FN~~Fee~~~~Q~ 579 (648)
||++|-..|..++++-+
T Consensus 2 rfkrfrkkfkklfkkls 18 (27)
T 2ket_A 2 RFKRFRKKFKKLFKKLS 18 (27)
T ss_dssp CHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHhcC
Confidence 58888888888887643
No 10
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=19.22 E-value=4.3e+02 Score=25.04 Aligned_cols=95 Identities=11% Similarity=0.126 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHhhhhhhhhcccc----------Cc-------cchhhHHHHHHHHHHHHH
Q 006376 14 EENLIAAAEHLVRALGS-NKNLTSNMKRVLADLGSQLSTMATI----------SD-------EGVSEIEEQLNIVQEKIL 75 (648)
Q Consensus 14 ~~~~~a~~~~l~~~L~~-s~~lt~~~~~~l~~~d~rl~~~~~~----------~p-------~~~~nie~~l~~~e~~i~ 75 (648)
.+.+..+|+.|.+.++. ...-......-+..+|++.-.+..- .| .+.+.+|..++.++.+..
T Consensus 36 a~~v~~~a~~L~~~l~~~~~~~~~~~~~~I~~lE~~aD~i~~~i~~~L~~~fitP~dReDI~~L~~~lDdI~D~ie~~a~ 115 (227)
T 3l39_A 36 SDVLSASSVLLVESMEHDLPTERADYYKQIKDMEREGDRLTHLIFDELSTTFITPFDREDIHDLASCMDDVIDGINSSAK 115 (227)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788888888888874 3333455666677777777666542 14 555666777776666555
Q ss_pred hcccCccccccCChhcHHHHH----HHHHHHHHHHHHhhc
Q 006376 76 SREADQSMIWDSGPDEASEYL----NAADEARKLIERLDG 111 (648)
Q Consensus 76 ~~~~~~~~i~~~~~~~~~~yL----~av~~l~~~~~~l~~ 111 (648)
....... ..++.++.++. ++++.+..++..|..
T Consensus 116 ~l~l~~~---~~~~~~~~~l~~~i~~~~~~l~~ai~~L~~ 152 (227)
T 3l39_A 116 RIVIYNP---RPISESGKELSRLIHEEAINIGKAMDELET 152 (227)
T ss_dssp HHHHHCC---SSCCHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HhhccCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5443220 11244444443 556666667766654
Done!