Query 006377
Match_columns 648
No_of_seqs 234 out of 793
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 22:24:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006377.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006377hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1032 Uncharacterized conser 100.0 4.7E-46 1E-50 419.2 24.2 472 64-647 103-583 (590)
2 PF02893 GRAM: GRAM domain; I 99.7 1.3E-17 2.7E-22 138.7 5.4 67 68-134 1-69 (69)
3 smart00568 GRAM domain in gluc 99.6 2.7E-15 5.8E-20 121.7 6.8 59 75-133 1-60 (61)
4 KOG4347 GTPase-activating prot 98.5 5.1E-08 1.1E-12 109.7 3.9 105 64-172 7-115 (671)
5 KOG1032 Uncharacterized conser 98.3 7E-07 1.5E-11 102.4 6.8 310 65-452 248-581 (590)
6 PF14844 PH_BEACH: PH domain a 97.5 0.00024 5.2E-09 63.9 7.0 86 81-167 1-105 (106)
7 PF14470 bPH_3: Bacterial PH d 97.4 0.0025 5.4E-08 55.5 12.0 85 76-163 1-87 (96)
8 PF10698 DUF2505: Protein of u 96.6 0.21 4.5E-06 48.3 17.8 149 286-447 4-158 (159)
9 cd01201 Neurobeachin Neurobeac 95.1 0.095 2.1E-06 47.8 7.9 89 80-169 1-104 (108)
10 cd08868 START_STARD1_3_like Ch 90.6 6.5 0.00014 39.4 13.9 148 285-445 52-206 (208)
11 PF11696 DUF3292: Protein of u 90.0 0.86 1.9E-05 53.1 7.7 84 84-170 519-634 (642)
12 cd08904 START_STARD6-like Lipi 89.6 13 0.00028 37.7 15.2 144 284-441 49-200 (204)
13 cd08905 START_STARD1-like Chol 88.9 13 0.00028 37.5 14.7 140 285-445 53-207 (209)
14 cd08906 START_STARD3-like Chol 87.9 28 0.0006 35.3 16.3 144 284-446 52-208 (209)
15 cd08876 START_1 Uncharacterize 84.8 31 0.00068 33.7 14.5 143 283-442 43-192 (195)
16 cd08871 START_STARD10-like Lip 84.8 30 0.00065 35.0 14.7 86 365-454 121-213 (222)
17 PF00407 Bet_v_1: Pathogenesis 84.6 39 0.00085 32.5 16.7 143 283-450 6-150 (151)
18 cd05018 CoxG Carbon monoxide d 82.5 37 0.00081 30.6 14.9 59 383-447 84-142 (144)
19 PF11605 Vps36_ESCRT-II: Vacuo 80.0 6.3 0.00014 34.9 6.6 59 77-135 12-75 (89)
20 KOG4471 Phosphatidylinositol 3 79.8 6.5 0.00014 45.5 8.2 101 67-169 27-134 (717)
21 PF06115 DUF956: Domain of unk 79.7 6.9 0.00015 36.4 6.9 75 92-169 19-96 (118)
22 PF10805 DUF2730: Protein of u 77.7 4.7 0.0001 36.7 5.3 45 602-646 50-96 (106)
23 cd07821 PYR_PYL_RCAR_like Pyra 76.0 57 0.0012 29.0 13.8 106 284-416 4-112 (140)
24 PF04102 SlyX: SlyX; InterPro 74.7 5.8 0.00013 33.3 4.7 41 602-642 12-52 (69)
25 PF06713 bPH_4: Bacterial PH d 73.5 16 0.00035 30.9 7.1 64 102-169 5-72 (74)
26 cd00890 Prefoldin Prefoldin is 72.8 6.8 0.00015 35.9 5.1 42 600-641 86-127 (129)
27 PRK09039 hypothetical protein; 72.7 4.6 9.9E-05 44.2 4.6 71 552-646 26-98 (343)
28 PRK00295 hypothetical protein; 71.5 11 0.00024 31.6 5.6 41 602-642 13-53 (68)
29 PRK02793 phi X174 lysis protei 71.0 10 0.00022 32.2 5.4 41 602-642 16-56 (72)
30 cd00177 START Lipid-binding ST 68.9 1.1E+02 0.0023 29.1 13.2 121 284-418 42-167 (193)
31 COG4687 Uncharacterized protei 68.5 8.3 0.00018 35.5 4.5 65 94-160 21-87 (122)
32 smart00338 BRLZ basic region l 68.1 10 0.00022 31.1 4.6 38 602-639 27-64 (65)
33 PF02996 Prefoldin: Prefoldin 67.6 8.5 0.00019 34.9 4.6 43 599-641 75-117 (120)
34 PRK04325 hypothetical protein; 67.0 14 0.0003 31.5 5.4 41 602-642 17-57 (74)
35 PRK04406 hypothetical protein; 66.6 14 0.00031 31.6 5.3 41 602-642 19-59 (75)
36 cd08874 START_STARD9-like C-te 66.5 1.3E+02 0.0028 30.6 13.2 121 284-416 48-176 (205)
37 PRK02119 hypothetical protein; 66.4 15 0.00032 31.4 5.4 41 602-642 17-57 (73)
38 cd08903 START_STARD5-like Lipi 66.3 1.5E+02 0.0033 29.8 16.6 151 285-446 50-207 (208)
39 smart00234 START in StAR and p 65.4 1.4E+02 0.0031 29.2 15.6 148 285-446 49-202 (206)
40 PRK00736 hypothetical protein; 65.2 17 0.00036 30.6 5.4 41 602-642 13-53 (68)
41 PRK00846 hypothetical protein; 64.2 18 0.00038 31.3 5.4 40 603-642 22-61 (77)
42 cd07823 SRPBCC_5 Ligand-bindin 64.0 1.2E+02 0.0027 28.0 14.8 44 380-427 82-127 (146)
43 cd08869 START_RhoGAP C-termina 63.1 1.2E+02 0.0026 30.2 12.2 117 285-419 48-171 (197)
44 cd08911 START_STARD7-like Lipi 61.1 1.8E+02 0.0039 29.2 13.1 150 285-445 49-205 (207)
45 cd08870 START_STARD2_7-like Li 60.8 1.9E+02 0.0041 29.0 14.0 150 285-446 54-208 (209)
46 PRK10724 hypothetical protein; 60.6 1.7E+02 0.0036 28.4 14.1 34 387-424 98-131 (158)
47 PF02050 FliJ: Flagellar FliJ 55.4 32 0.0007 30.2 6.0 47 601-647 52-98 (123)
48 PF11932 DUF3450: Protein of u 54.4 23 0.0005 36.7 5.5 40 606-645 40-79 (251)
49 PF13600 DUF4140: N-terminal d 53.9 13 0.00028 33.2 3.1 39 604-642 66-104 (104)
50 PRK00888 ftsB cell division pr 50.4 37 0.0008 30.9 5.5 31 606-636 32-62 (105)
51 PF04707 PRELI: PRELI-like fam 50.2 2.4E+02 0.0053 27.2 14.9 74 376-450 79-153 (157)
52 PF06698 DUF1192: Protein of u 48.5 22 0.00047 29.3 3.3 30 598-627 18-47 (59)
53 PF04283 CheF-arch: Chemotaxis 47.1 76 0.0016 32.7 7.8 36 94-133 24-59 (221)
54 cd01244 PH_RasGAP_CG9209 RAS_G 46.8 55 0.0012 29.3 6.0 53 101-154 27-80 (98)
55 PRK03947 prefoldin subunit alp 46.3 42 0.00092 31.5 5.5 44 599-642 92-135 (140)
56 cd01264 PH_melted Melted pleck 46.1 49 0.0011 30.0 5.5 58 100-157 24-85 (101)
57 PF01852 START: START domain; 46.0 2.9E+02 0.0063 26.9 15.3 144 285-447 50-203 (206)
58 TIGR02473 flagell_FliJ flagell 45.7 50 0.0011 30.6 5.8 46 602-647 69-114 (141)
59 PRK09841 cryptic autophosphory 45.5 32 0.00069 41.4 5.5 33 599-631 265-297 (726)
60 smart00683 DM16 Repeats in sea 44.3 37 0.0008 27.6 3.9 35 96-131 19-53 (55)
61 PRK03100 sec-independent trans 44.3 43 0.00093 32.1 5.1 49 599-647 26-75 (136)
62 cd04766 HTH_HspR Helix-Turn-He 43.9 37 0.00081 29.5 4.4 43 596-638 37-88 (91)
63 cd01220 PH_CDEP Chondrocyte-de 43.4 2.2E+02 0.0047 25.5 9.3 62 95-157 16-81 (99)
64 PRK11519 tyrosine kinase; Prov 42.9 24 0.00051 42.4 3.9 34 599-632 265-298 (719)
65 cd00584 Prefoldin_alpha Prefol 39.8 53 0.0011 30.4 4.9 42 599-640 85-126 (129)
66 cd04789 HTH_Cfa Helix-Turn-Hel 39.3 73 0.0016 28.5 5.6 50 594-644 35-100 (102)
67 cd08872 START_STARD11-like Cer 38.9 4E+02 0.0088 27.5 11.7 78 369-451 138-231 (235)
68 cd00632 Prefoldin_beta Prefold 38.8 62 0.0014 29.0 5.1 44 599-642 61-104 (105)
69 PF08567 TFIIH_BTF_p62_N: TFII 38.4 58 0.0013 28.1 4.6 64 87-155 6-78 (79)
70 cd08910 START_STARD2-like Lipi 38.1 4.3E+02 0.0094 26.5 14.4 144 285-445 53-205 (207)
71 PHA03231 glycoprotein BALF4; P 37.8 19 0.0004 43.8 1.9 53 528-585 684-742 (829)
72 smart00233 PH Pleckstrin homol 37.3 1.4E+02 0.003 24.1 6.8 64 99-164 22-91 (102)
73 TIGR00293 prefoldin, archaeal 36.1 60 0.0013 29.9 4.7 40 599-638 84-123 (126)
74 cd08907 START_STARD8-like C-te 36.0 3.2E+02 0.007 28.0 10.1 51 366-419 126-179 (205)
75 PF07798 DUF1640: Protein of u 35.8 74 0.0016 31.4 5.5 39 606-644 56-103 (177)
76 PF00170 bZIP_1: bZIP transcri 35.6 87 0.0019 25.5 5.0 32 606-637 31-62 (64)
77 cd08867 START_STARD4_5_6-like 35.2 4.6E+02 0.01 26.0 15.0 81 359-441 117-202 (206)
78 PF07289 DUF1448: Protein of u 35.1 1.3E+02 0.0028 33.0 7.6 100 75-175 18-129 (339)
79 cd08877 START_2 Uncharacterize 34.9 4.8E+02 0.01 26.1 13.4 149 283-445 48-213 (215)
80 PF07334 IFP_35_N: Interferon- 34.6 48 0.001 28.7 3.4 29 606-634 5-33 (76)
81 PF07716 bZIP_2: Basic region 34.3 91 0.002 24.6 4.8 30 614-643 24-53 (54)
82 PF04340 DUF484: Protein of un 33.8 46 0.00099 33.9 3.8 27 602-628 41-67 (225)
83 PF05278 PEARLI-4: Arabidopsis 33.7 81 0.0018 33.5 5.6 39 602-640 167-211 (269)
84 PF05377 FlaC_arch: Flagella a 33.6 85 0.0018 25.5 4.4 35 609-643 1-35 (55)
85 PF06005 DUF904: Protein of un 33.1 1.1E+02 0.0024 26.1 5.3 39 602-640 19-64 (72)
86 KOG0526 Nucleosome-binding fac 32.9 1.4E+02 0.003 34.8 7.5 81 88-174 10-92 (615)
87 PRK10803 tol-pal system protei 32.8 67 0.0015 33.8 4.9 38 603-640 56-93 (263)
88 PF04484 DUF566: Family of unk 32.4 84 0.0018 34.1 5.7 42 603-644 182-226 (311)
89 TIGR01010 BexC_CtrB_KpsE polys 32.4 64 0.0014 35.2 4.9 33 599-631 168-200 (362)
90 cd01233 Unc104 Unc-104 pleckst 32.3 1.4E+02 0.0031 26.3 6.3 65 101-167 24-91 (100)
91 PF04156 IncA: IncA protein; 31.6 95 0.0021 30.5 5.6 31 616-646 159-189 (191)
92 PRK00888 ftsB cell division pr 31.1 86 0.0019 28.5 4.7 36 608-643 27-62 (105)
93 PF03703 bPH_2: Bacterial PH d 30.9 1.7E+02 0.0036 23.9 6.2 67 100-167 6-77 (80)
94 PF08614 ATG16: Autophagy prot 30.7 1E+02 0.0022 30.8 5.6 41 603-643 125-165 (194)
95 TIGR03017 EpsF chain length de 30.4 46 0.001 37.1 3.5 35 599-633 169-203 (444)
96 PF04977 DivIC: Septum formati 30.4 1E+02 0.0022 25.5 4.8 35 607-641 16-50 (80)
97 PF04380 BMFP: Membrane fusoge 30.4 87 0.0019 27.0 4.4 30 614-643 49-78 (79)
98 PF03317 ELF: ELF protein; In 30.3 65 0.0014 32.7 4.0 43 601-643 239-281 (284)
99 COG3461 Uncharacterized conser 30.0 56 0.0012 29.1 3.1 43 600-642 30-78 (103)
100 PF07289 DUF1448: Protein of u 29.9 2.3E+02 0.0051 31.2 8.4 98 75-176 150-256 (339)
101 cd01218 PH_phafin2 Phafin2 Pl 29.7 2.5E+02 0.0055 25.5 7.5 65 92-157 15-82 (104)
102 KOG0971 Microtubule-associated 29.2 76 0.0016 38.9 5.0 44 599-642 292-345 (1243)
103 PRK14011 prefoldin subunit alp 29.1 99 0.0022 29.8 5.0 41 598-638 85-125 (144)
104 PF00169 PH: PH domain; Inter 28.8 3.3E+02 0.0072 22.4 8.4 63 99-163 21-92 (104)
105 COG2867 Oligoketide cyclase/li 28.2 1.4E+02 0.0031 28.9 5.8 44 375-425 77-120 (146)
106 TIGR01005 eps_transp_fam exopo 27.9 51 0.0011 39.6 3.5 36 598-633 191-226 (754)
107 PRK13729 conjugal transfer pil 27.9 87 0.0019 35.9 5.0 38 602-639 77-121 (475)
108 PRK09039 hypothetical protein; 27.6 90 0.002 34.2 5.0 41 603-643 118-158 (343)
109 COG3132 Uncharacterized protei 27.5 89 0.0019 31.3 4.4 23 620-642 190-212 (215)
110 PF06017 Myosin_TH1: Myosin ta 27.4 2.2E+02 0.0048 28.4 7.4 103 67-175 34-147 (199)
111 PF08172 CASP_C: CASP C termin 27.1 1.2E+02 0.0026 31.9 5.5 41 605-645 90-131 (248)
112 cd08908 START_STARD12-like C-t 27.0 6.8E+02 0.015 25.4 13.7 137 285-437 56-201 (204)
113 PF10805 DUF2730: Protein of u 26.2 1.1E+02 0.0024 27.8 4.5 44 599-642 33-78 (106)
114 TIGR02338 gimC_beta prefoldin, 25.5 1.3E+02 0.0029 27.2 4.9 43 599-641 65-107 (110)
115 PRK07720 fliJ flagellar biosyn 25.1 1.7E+02 0.0037 27.6 5.9 45 603-647 73-117 (146)
116 PF14584 DUF4446: Protein of u 24.9 44 0.00095 32.5 1.8 34 606-639 44-77 (151)
117 PF09738 DUF2051: Double stran 24.8 1.4E+02 0.003 32.4 5.6 45 600-644 125-169 (302)
118 cd08861 OtcD1_ARO-CYC_like N-t 24.8 5.1E+02 0.011 23.2 14.0 32 384-418 82-113 (142)
119 TIGR03752 conj_TIGR03752 integ 24.3 2.3E+02 0.0051 32.5 7.5 46 595-640 53-98 (472)
120 cd04781 HTH_MerR-like_sg6 Heli 24.2 1.6E+02 0.0036 26.9 5.4 48 596-644 36-103 (120)
121 PF08512 Rtt106: Histone chape 24.1 4E+02 0.0086 23.5 7.6 78 86-172 4-86 (95)
122 PRK13182 racA polar chromosome 23.9 97 0.0021 30.8 4.0 21 594-614 34-54 (175)
123 PRK04406 hypothetical protein; 23.7 2.3E+02 0.005 24.3 5.7 42 605-646 8-57 (75)
124 PF08286 Spc24: Spc24 subunit 23.5 27 0.00058 32.2 0.0 39 607-645 5-43 (118)
125 PF14182 YgaB: YgaB-like prote 23.4 1.1E+02 0.0024 26.6 3.7 24 621-644 39-62 (79)
126 PF07352 Phage_Mu_Gam: Bacteri 23.1 1.4E+02 0.0031 28.5 5.0 45 599-643 1-53 (149)
127 TIGR03495 phage_LysB phage lys 22.9 1.9E+02 0.0041 27.7 5.6 42 603-644 14-55 (135)
128 cd04775 HTH_Cfa-like Helix-Tur 22.6 1.8E+02 0.0038 26.0 5.1 47 597-644 38-100 (102)
129 cd07813 COQ10p_like Coenzyme Q 22.5 3.1E+02 0.0068 24.8 7.0 53 387-443 82-134 (138)
130 PF08317 Spc7: Spc7 kinetochor 22.5 1.7E+02 0.0037 31.7 5.9 43 603-645 137-179 (325)
131 PF04156 IncA: IncA protein; 22.4 1E+02 0.0022 30.4 3.8 46 597-642 77-122 (191)
132 PF12808 Mto2_bdg: Micro-tubul 22.1 1.3E+02 0.0028 24.2 3.6 25 618-642 25-49 (52)
133 cd08909 START_STARD13-like C-t 21.9 8.6E+02 0.019 24.8 11.0 50 367-419 127-179 (205)
134 PF12958 DUF3847: Protein of u 21.7 1.8E+02 0.0039 25.8 4.8 33 610-642 3-35 (86)
135 TIGR03007 pepcterm_ChnLen poly 21.5 95 0.0021 35.2 3.9 34 599-632 159-192 (498)
136 KOG2483 Upstream transcription 21.3 1.1E+02 0.0025 31.8 4.0 43 603-645 96-142 (232)
137 PRK03947 prefoldin subunit alp 21.2 2E+02 0.0043 27.0 5.4 38 606-643 92-129 (140)
138 cd00821 PH Pleckstrin homology 21.1 4.2E+02 0.0091 20.9 8.6 64 98-163 19-86 (96)
139 PF14257 DUF4349: Domain of un 21.1 1.3E+02 0.0028 31.3 4.6 30 615-644 162-191 (262)
140 PF11687 DUF3284: Domain of un 20.9 6.6E+02 0.014 23.1 12.3 98 285-413 3-100 (120)
141 PF10186 Atg14: UV radiation r 20.9 1.7E+02 0.0037 30.4 5.4 35 606-640 68-102 (302)
142 TIGR00293 prefoldin, archaeal 20.8 2.1E+02 0.0046 26.2 5.4 38 606-643 84-121 (126)
143 PRK09343 prefoldin subunit bet 20.7 2E+02 0.0044 26.7 5.2 42 600-641 70-111 (121)
144 TIGR00219 mreC rod shape-deter 20.6 48 0.001 35.3 1.2 8 543-550 3-10 (283)
145 KOG3215 Uncharacterized conser 20.3 1.5E+02 0.0032 30.4 4.4 32 612-646 96-127 (222)
146 PF14916 CCDC92: Coiled-coil d 20.1 2.2E+02 0.0048 23.6 4.7 30 618-647 6-36 (60)
147 PF10359 Fmp27_WPPW: RNA pol I 20.1 1.3E+02 0.0029 34.3 4.7 25 603-627 165-189 (475)
148 PF01814 Hemerythrin: Hemeryth 20.0 2E+02 0.0043 25.2 5.0 36 609-644 48-93 (133)
No 1
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=100.00 E-value=4.7e-46 Score=419.17 Aligned_cols=472 Identities=24% Similarity=0.337 Sum_probs=344.8
Q ss_pred hhhhhhhhhhCC--CCCCCeeeeEEEEEEeecceeceEEEEecceEEEEeccCCceeEEEEeccccccccccccccccCC
Q 006377 64 TLRSEEYRQLFR--LPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPN 141 (648)
Q Consensus 64 ~~rn~~F~~lF~--LP~~E~LI~~f~CaL~r~i~~~GrLYIS~~~iCF~S~ifg~~tk~vIp~~dI~~I~K~kt~~i~pn 141 (648)
...+..|+..|. +|++|.|+.+|+|||+|.|++||||||+++||||||++|||.++++|||.+|+.|+|.++++++||
T Consensus 103 ~~~~~~~a~~~~n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIpf~eI~~ikk~~tag~fpn 182 (590)
T KOG1032|consen 103 LLAGVNLASEFLNGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIPFDEITLIKKTKTAGIFPN 182 (590)
T ss_pred hhcchhhhhhhhhcCCCcceeeeecchhhccccccccccccccceeeecccccCccceeEEeeeeeeeeehhhhccCCCc
Confidence 556667777773 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCeEEEEeccCCHHHHHHHHHHHHHhcCCCCCCccccccCCCCCCCCCCCcccccccccCCCCCCCCcCccccc
Q 006377 142 AIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGSGSLASAEQQDSSSETSSPQNGPVVIEKVNCCSADPIAKSDSIIRE 221 (648)
Q Consensus 142 aI~I~T~~~k~~F~SF~~RD~a~~lI~~~w~~~~~~a~~~~eq~~~~s~~ss~~n~~v~~e~~~~s~~~~~s~~~~~~~~ 221 (648)
+|+|.|...+|+|+||.+||.+|++|..+-+..... ..+.-.+.++... .....+ ++..++
T Consensus 183 ~i~i~t~~~ky~f~s~~Srda~~~~~~~~~~~~~~~-----------s~s~~~~~~~l~~-----~~~~~~---~~~~~~ 243 (590)
T KOG1032|consen 183 AIEITTGTTKYIFVSLLSRDATYKLIKLLLHKFLDS-----------SGSPRADSDYLSS-----VEPEVN---DDQQGN 243 (590)
T ss_pred ceEEecCCCcceeeecccCccHHHHHHHhhhhcccc-----------cCCccccchhccc-----CCCCcC---cccccc
Confidence 999999999999999999999999885443322110 0000000010000 000000 000000
Q ss_pred ccCCCCCCCCCccCCCCccccCCCccccccCcccCCCCCCCCCCcCCCCCC----CCCCCCcccceeeeeEEecCHHHHH
Q 006377 222 EDLSSDSKLPANVEMTPVEMQDDNVEQDFEPVLDTDSLHPIKTSSWNIENS----DAPKIPECYTKVAETNFQMKVEDFY 297 (648)
Q Consensus 222 ~~~S~~s~~p~~v~st~~~d~~~n~~~~~~~v~~~d~~~~~~~f~~~~e~~----~~P~~pe~~~~v~e~~fpisv~~~F 297 (648)
.+ ..+..... + ..|+...++. -.-.++...-++.+..|++++..||
T Consensus 244 ----~~--------~~~~~s~~----~--------------~s~~~~~~e~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~ 293 (590)
T KOG1032|consen 244 ----VD--------NSQSPSAL----Q--------------NSFDSPKEEELEHDFSCSLSRLFGVLGRLPFSAPIGAFF 293 (590)
T ss_pred ----cc--------cCCCcccc----c--------------cccCCCccccccccccccccccccccccccccccccccc
Confidence 00 00000000 0 0000000000 0001223334788899999999999
Q ss_pred hhhccCCchhHHHHHHHHcCCcceeeccccccCCCceeEEEEEEeeeeeccCCceeeeeEEEEEEEeeCC-eEEEEEeEe
Q 006377 298 SLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRNS-HLVIETSQE 376 (648)
Q Consensus 298 ~lLFgD~s~~F~~~f~~~rg~tdi~~tpW~~~~~g~~~R~isY~~pl~~p~GPK~t~c~etQki~~~~~~-~~VIetst~ 376 (648)
+++|+|+ .|+..|.+.++..++...+|.....+...|.++|++++..+.|||.+.|..+|++.+++.. +|.+..++.
T Consensus 294 ~~lf~d~--~~~~~~l~~~~~~~vs~~~~~~~~~~~~~r~~~y~~~l~~~~gPk~t~~~~~~~l~~~~~~~~~~vls~t~ 371 (590)
T KOG1032|consen 294 SLLFGDN--TFFFFFLEDQDEIQVSPIPWKGPRSGILLRTLSYTKGLPAKSGPKSTDCEGTQTLHHQDLEKYFRVLSETL 371 (590)
T ss_pred eeeccCc--ceeeeccccccccccccccccCCCccceeEeccCCccCCCcCCCccccccceeeEEeccchhhhhhhheec
Confidence 9999976 4778889999999999999998888899999999999999999999999999999888665 477888999
Q ss_pred eCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEeeeccchhhhhcchH--HHHHHHHHHHHHHHHHHHhhccCC
Q 006377 377 VHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTL--EECRDVYAMWIGMAHDVLKQKNLE 454 (648)
Q Consensus 377 t~DVPYGD~F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~--~g~ke~~~~wv~~~~e~l~~~~~e 454 (648)
+++||||++|.|.+||+|.|.+. ..|+|+++..|.|.|++|.+.+++..+. +.+-+.+..++....+..+..+.+
T Consensus 372 ~~~vps~~~f~v~~~y~i~~~~~---~~~~l~v~~~V~~~~~sw~~~~~~~~~~~~k~lv~~~~~~~~~~e~~~~~~~~~ 448 (590)
T KOG1032|consen 372 TPDVPSGDSFYVKTRYLISRAGS---NSCKLKVSTSVEWTKSSWDVPVSEIGSNTLKDLVEILEKLLENGEELAKNQEKE 448 (590)
T ss_pred cCCccccceeeeeEEEEEEecCC---cceeecceeEEEeccCchhhccccccccchhhHHHHHHHHHhccHHHHHhhccc
Confidence 99999999999999999999863 4899999999999999999999988775 223333333332222221111111
Q ss_pred CCCCcccccCCCCCCccccccCccccceeecccCccccccccCCccccccccCcccccccccccccccccchhHHHHHHH
Q 006377 455 KPEGWIVVDSEGGPAYSTVQNDDVHSERVVNTGETSERLCNADHRIRTLPITDSLDASQSVGNLLQGNLVDSAAIASLLR 534 (648)
Q Consensus 455 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (648)
.... .. +. +..+++ .|.+.+ -..++
T Consensus 449 ~~~~--~~------------~~----~~~v~~-------------------~~~~v~------------------~~~~~ 473 (590)
T KOG1032|consen 449 DELT--YE------------GS----PWEVEK-------------------PGGTVR------------------QLSYK 473 (590)
T ss_pred cccc--cc------------CC----CccccC-------------------CCceee------------------eeccc
Confidence 1000 00 00 010111 111001 11134
Q ss_pred HHHhhhhccccccCCceeehhhHHHHHHHHhheeeeeecCCCceeecCCCcccCCCcccCCCCCCccchHHHHHHhhchh
Q 006377 535 ESMTKCCSFVKRQSGVSLILVIAFAVIFLMQVSILVLLNRPQHVHMASPPDYMGAGVGVGLGQRSAESIPWLERRMHYLK 614 (648)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (648)
|.|-+..+..+++.+...+.+.+...|++|+..|+.|...|-.-+.+.|.+|. .+...+..-..+..|+.+|++-|+
T Consensus 474 ~~~~~~i~~~~~~~~~~~i~~l~~~~~~~l~~~i~~l~~~~~g~~~~~h~r~~---~~~~~~~~v~~~~~~~~~~~~~l~ 550 (590)
T KOG1032|consen 474 EVWNKPISPDKREVTLLQVVVLVPLKILWLLNTILFLHDVPFGSYFEVHERYR---EALDETSKVKTTLVWVSFRIEWLK 550 (590)
T ss_pred cccccccccccccceeEEEEEEehhhhhHHHHHHhhccCCCCccceeeehhhh---hhhcccchhhhhhHHHHHHHHHHH
Confidence 55777777888888888888888888999999999999999999999999994 334556677889999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhc
Q 006377 615 DEMLMVEARLERMWHEHAVLRAQLKDIEQLHKR 647 (648)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (648)
+.|.+|.+..+.||...+.|+..+..||+|.++
T Consensus 551 ~~~~~~~~~k~~~r~~~~~l~~~~~~l~~~~~~ 583 (590)
T KOG1032|consen 551 DIKMEARKIKQILRNDQDLLEVLFSLLEKLSQS 583 (590)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999998653
No 2
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=99.70 E-value=1.3e-17 Score=138.68 Aligned_cols=67 Identities=39% Similarity=0.910 Sum_probs=48.6
Q ss_pred hhhhhhCCCCCCCeeeeEEEEEEee-cceeceEEEEecceEEEEeccCCcee-EEEEeccccccccccc
Q 006377 68 EEYRQLFRLPSEEVLVQDFNCAFQE-SILLQGHMYLFVHFICFYSNIFGFET-KKIIPFYEVTAVRRAK 134 (648)
Q Consensus 68 ~~F~~lF~LP~~E~LI~~f~CaL~r-~i~~~GrLYIS~~~iCF~S~ifg~~t-k~vIp~~dI~~I~K~k 134 (648)
++||++|+||.+|.|+.+|.|+|++ +++.+|+||||++||||+|+.++..+ +++|||.||.+|+|.+
T Consensus 1 ~~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~i~k~~ 69 (69)
T PF02893_consen 1 EKFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKSIEKET 69 (69)
T ss_dssp ----------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEEEEEE-
T ss_pred CcccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeEEEEeC
Confidence 5799999999999999999999998 89999999999999999999999888 9999999999999863
No 3
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=99.58 E-value=2.7e-15 Score=121.73 Aligned_cols=59 Identities=32% Similarity=0.649 Sum_probs=56.8
Q ss_pred CCCCCCeeeeEEEEEEeecceeceEEEEecceEEEEeccCCcee-EEEEecccccccccc
Q 006377 75 RLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFET-KKIIPFYEVTAVRRA 133 (648)
Q Consensus 75 ~LP~~E~LI~~f~CaL~r~i~~~GrLYIS~~~iCF~S~ifg~~t-k~vIp~~dI~~I~K~ 133 (648)
+||++|.|+++|.|+|+++++++||||||++||||+|+.+|+.+ +++||+.||.+|+|.
T Consensus 1 ~l~~~E~l~~~~~C~l~~~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~~i~k~ 60 (61)
T smart00568 1 KLPEEEKLIADYSCYLSRDGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADITRIEKS 60 (61)
T ss_pred CcCCCcEEEEEEEeEECCCccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHeeEEEEC
Confidence 48999999999999999999999999999999999999999988 999999999999986
No 4
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=98.53 E-value=5.1e-08 Score=109.66 Aligned_cols=105 Identities=27% Similarity=0.417 Sum_probs=92.0
Q ss_pred hhhhhhhhhhCCCCCCCeeeeEEEEEEee---cceeceEEEEecceEEEEeccCCceeEEEEeccccccccccccccccC
Q 006377 64 TLRSEEYRQLFRLPSEEVLVQDFNCAFQE---SILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFP 140 (648)
Q Consensus 64 ~~rn~~F~~lF~LP~~E~LI~~f~CaL~r---~i~~~GrLYIS~~~iCF~S~ifg~~tk~vIp~~dI~~I~K~kt~~i~p 140 (648)
+.++++| .+|+|| |.|..+..|.++. ....+||||+|++|+||.|-..+ .+.+++|+..|..|++.+....++
T Consensus 7 r~~s~~f-~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~-~c~~~~Pl~~vr~ve~~~~ss~~~ 82 (671)
T KOG4347|consen 7 RLKSEDF-AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEW-LCSFITPLLAVRSVERLDDSSLFT 82 (671)
T ss_pred hhccccc-ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCcc-cceEeeehhhhhhhhccCccccch
Confidence 6788999 999999 9999999999985 45699999999999999998754 579999999999999998778899
Q ss_pred CeEEEEecC-eEEEEeccCCHHHHHHHHHHHHH
Q 006377 141 NAIEIFAAG-KKYFFASFLSRDEAFKLITDGWL 172 (648)
Q Consensus 141 naI~I~T~~-~k~~F~SF~~RD~a~~lI~~~w~ 172 (648)
+.|.+.|.+ ..+.|..+..|+..+--|...-.
T Consensus 83 ~~i~~~~~~~~~~~f~~~~~r~~~~~k~~~~~~ 115 (671)
T KOG4347|consen 83 QLISLFTSNMVGMRFGGLTERLKLLSKLHLPPA 115 (671)
T ss_pred hhhHHhhcCcceEEecchhhHHHHHHHHhchHh
Confidence 999999876 78999999999998766654443
No 5
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=98.33 E-value=7e-07 Score=102.42 Aligned_cols=310 Identities=15% Similarity=0.196 Sum_probs=172.4
Q ss_pred hhhhhhhhhCCCCCCCeeeeEEEEEEeecceeceEEEEecceEEEEeccCCceeEEEEeccccccccccccccccCC-eE
Q 006377 65 LRSEEYRQLFRLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPN-AI 143 (648)
Q Consensus 65 ~rn~~F~~lF~LP~~E~LI~~f~CaL~r~i~~~GrLYIS~~~iCF~S~ifg~~tk~vIp~~dI~~I~K~kt~~i~pn-aI 143 (648)
..+..|+..|++|++|.++.+|+|.+.+..+++|+++++-...|||+.+||..+++.-.|+++..++-.......+. ++
T Consensus 248 ~~~s~~~~s~~~~~~e~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~~~lf~d~~~~~~~l~~~~~~~vs~~~~~~~~~~~ 327 (590)
T KOG1032|consen 248 QSPSALQNSFDSPKEEELEHDFSCSLSRLFGVLGRLPFSAPIGAFFSLLFGDNTFFFFFLEDQDEIQVSPIPWKGPRSGI 327 (590)
T ss_pred CCccccccccCCCccccccccccccccccccccccccccccccccceeeccCcceeeeccccccccccccccccCCCccc
Confidence 56788999999999999999999999999999999999999999999999999999999999999988765433322 11
Q ss_pred EEEe-------------------cCeEEEEeccCCHHHHHHHHHHHHHhcCCCCCCccccccCCCCCCCCCCCccccccc
Q 006377 144 EIFA-------------------AGKKYFFASFLSRDEAFKLITDGWLQHGSGSLASAEQQDSSSETSSPQNGPVVIEKV 204 (648)
Q Consensus 144 ~I~T-------------------~~~k~~F~SF~~RD~a~~lI~~~w~~~~~~a~~~~eq~~~~s~~ss~~n~~v~~e~~ 204 (648)
...+ ....+.|.++... |+.+...-....+ . . .......-+....
T Consensus 328 ~~r~~~y~~~l~~~~gPk~t~~~~~~~l~~~~~~~~---~~vls~t~~~~vp---s------~--~~f~v~~~y~i~~-- 391 (590)
T KOG1032|consen 328 LLRTLSYTKGLPAKSGPKSTDCEGTQTLHHQDLEKY---FRVLSETLTPDVP---S------G--DSFYVKTRYLISR-- 391 (590)
T ss_pred eeEeccCCccCCCcCCCccccccceeeEEeccchhh---hhhhheeccCCcc---c------c--ceeeeeEEEEEEe--
Confidence 1111 0122333333221 2222221110000 0 0 0000000000000
Q ss_pred ccCCCCCCCCcCcccccccCCCCCCCCCccCCCCccccCCCccc--cccCcccCCCCCCCCCCcCCCCCCCCCCCCcccc
Q 006377 205 NCCSADPIAKSDSIIREEDLSSDSKLPANVEMTPVEMQDDNVEQ--DFEPVLDTDSLHPIKTSSWNIENSDAPKIPECYT 282 (648)
Q Consensus 205 ~~s~~~~~s~~~~~~~~~~~S~~s~~p~~v~st~~~d~~~n~~~--~~~~v~~~d~~~~~~~f~~~~e~~~~P~~pe~~~ 282 (648)
+ +++..+ ....|.-+ ..+ |. . .+.+.+.
T Consensus 392 ----------------~---------------------~~~~~~l~v~~~V~~~-----~~s--w~---~---~~~~~~~ 421 (590)
T KOG1032|consen 392 ----------------A---------------------GSNSCKLKVSTSVEWT-----KSS--WD---V---PVSEIGS 421 (590)
T ss_pred ----------------c---------------------CCcceeecceeEEEec-----cCc--hh---h---ccccccc
Confidence 0 000000 00000000 000 00 0 1111111
Q ss_pred eeeeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCCCceeEEEEEEeeeeeccCCceeeeeEEEEEE
Q 006377 283 KVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFR 362 (648)
Q Consensus 283 ~v~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~rg~tdi~~tpW~~~~~g~~~R~isY~~pl~~p~GPK~t~c~etQki~ 362 (648)
...++.++ +|+-+|++. +-...-+.+-++..+..++|.....++..|...|.---+.++++.....+..|...
T Consensus 422 ----~~~k~lv~-~~~~~~~~~--e~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~~~~~~i~~~~~~~~~~~i~~ 494 (590)
T KOG1032|consen 422 ----NTLKDLVE-ILEKLLENG--EELAKNQEKEDELTYEGSPWEVEKPGGTVRQLSYKEVWNKPISPDKREVTLLQVVV 494 (590)
T ss_pred ----cchhhHHH-HHHHHHhcc--HHHHHhhcccccccccCCCccccCCCceeeeeccccccccccccccccceeEEEEE
Confidence 12233333 344445533 22333444455666667799966778899999888544455667666666666554
Q ss_pred E-eeCCeEEEEEeEeeCCCCCCCceEEEEEEEEEecCCCC-CCceEEEEEEEEEEeeeccchhhhhcchHHHHHHHHHHH
Q 006377 363 V-YRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGS-KEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMW 440 (648)
Q Consensus 363 ~-~~~~~~VIetst~t~DVPYGD~F~Ve~R~~It~~~~~s-k~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~~~~w 440 (648)
. ..+..|++++.+..+|+|||++|.|+.||. ....... ...+.+.++..+.|.| +-+++....+........+
T Consensus 495 l~~~~~~~l~~~i~~l~~~~~g~~~~~h~r~~-~~~~~~~~v~~~~~~~~~~~~~l~----~~~~~~~~~k~~~r~~~~~ 569 (590)
T KOG1032|consen 495 LVPLKILWLLNTILFLHDVPFGSYFEVHERYR-EALDETSKVKTTLVWVSFRIEWLK----DIKMEARKIKQILRNDQDL 569 (590)
T ss_pred EehhhhhHHHHHHhhccCCCCccceeeehhhh-hhhcccchhhhhhHHHHHHHHHHH----HHHHHHhhhHHHHHHHHHH
Confidence 4 445678889999999999999999999996 2211100 0123333333444433 3444555555555566666
Q ss_pred HHHHHHHHhhcc
Q 006377 441 IGMAHDVLKQKN 452 (648)
Q Consensus 441 v~~~~e~l~~~~ 452 (648)
.+++..++++.+
T Consensus 570 l~~~~~~l~~~~ 581 (590)
T KOG1032|consen 570 LEVLFSLLEKLS 581 (590)
T ss_pred HHHHHHHHHHHH
Confidence 666666666544
No 6
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=97.52 E-value=0.00024 Score=63.88 Aligned_cols=86 Identities=20% Similarity=0.347 Sum_probs=60.9
Q ss_pred eeeeEEEEEEee-cceeceEEEEecceEEEEec---------------cCCceeEEEEeccccccccccccccccCCeEE
Q 006377 81 VLVQDFNCAFQE-SILLQGHMYLFVHFICFYSN---------------IFGFETKKIIPFYEVTAVRRAKTAGIFPNAIE 144 (648)
Q Consensus 81 ~LI~~f~CaL~r-~i~~~GrLYIS~~~iCF~S~---------------ifg~~tk~vIp~~dI~~I~K~kt~~i~pnaI~ 144 (648)
+++-.+.|.+.. .....|+|.|++++|.|..+ .-.......+|+.||..|.+..- .+-++||+
T Consensus 1 ~i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRy-llr~~AlE 79 (106)
T PF14844_consen 1 KILLSVPCELITPLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRY-LLRDTALE 79 (106)
T ss_dssp --SEEEEEEEEETTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEE-TTEEEEEE
T ss_pred CEEEEEEEEEEEeeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHh-cCcceEEE
Confidence 356789999985 45689999999999999876 22234567899999999999864 45688999
Q ss_pred EEecCeEEEEeccC---CHHHHHHHH
Q 006377 145 IFAAGKKYFFASFL---SRDEAFKLI 167 (648)
Q Consensus 145 I~T~~~k~~F~SF~---~RD~a~~lI 167 (648)
|...+++=+|-.|. .||++|+.|
T Consensus 80 iF~~dg~s~f~~F~~~~~R~~v~~~l 105 (106)
T PF14844_consen 80 IFFSDGRSYFFNFESKKERDEVYNKL 105 (106)
T ss_dssp EEETTS-EEEEE-SSHHHHHHHHCCS
T ss_pred EEEcCCcEEEEEcCCHHHHHHHHHhh
Confidence 99976554445674 488887644
No 7
>PF14470 bPH_3: Bacterial PH domain
Probab=97.42 E-value=0.0025 Score=55.51 Aligned_cols=85 Identities=22% Similarity=0.282 Sum_probs=71.1
Q ss_pred CCCCCeeeeEEEEEEee-cceeceEEEEecceEEEEecc-CCceeEEEEeccccccccccccccccCCeEEEEecCeEEE
Q 006377 76 LPSEEVLVQDFNCAFQE-SILLQGHMYLFVHFICFYSNI-FGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYF 153 (648)
Q Consensus 76 LP~~E~LI~~f~CaL~r-~i~~~GrLYIS~~~iCF~S~i-fg~~tk~vIp~~dI~~I~K~kt~~i~pnaI~I~T~~~k~~ 153 (648)
|.++|.++....|.+.. .-...|-+++|+..|-|+..- ++......|||++|.+|+..++ ++.+.|.|.++++++.
T Consensus 1 L~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g--~~~~~i~i~~~~~~~~ 78 (96)
T PF14470_consen 1 LKEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKG--ILGGKITIETNGEKIK 78 (96)
T ss_pred CcCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEcc--ccccEEEEEECCEEEE
Confidence 56899999999998873 234679999999999999764 6668889999999999999864 4678999999999999
Q ss_pred EeccCCHHHH
Q 006377 154 FASFLSRDEA 163 (648)
Q Consensus 154 F~SF~~RD~a 163 (648)
|.++ +.+++
T Consensus 79 i~~i-~k~~~ 87 (96)
T PF14470_consen 79 IDNI-QKGDV 87 (96)
T ss_pred EEEc-CHHHH
Confidence 9998 55544
No 8
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=96.57 E-value=0.21 Score=48.34 Aligned_cols=149 Identities=15% Similarity=0.158 Sum_probs=97.6
Q ss_pred eeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCCCceeEEEEEEeee-eec-----cCCceeeeeEEE
Q 006377 286 ETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPI-KVY-----FGAKFGSCKETQ 359 (648)
Q Consensus 286 e~~fpisv~~~F~lLFgD~s~~F~~~f~~~rg~tdi~~tpW~~~~~g~~~R~isY~~pl-~~p-----~GPK~t~c~etQ 359 (648)
...|++|++++|.+|... .|++.-++..|..+..+..-....++ ....+.=..|. +.| |-+..-...+++
T Consensus 4 ~~~~~~~~~~v~~~~~d~---~y~~~r~~~~g~~~~~~~~~~~~~~g-~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~e 79 (159)
T PF10698_consen 4 SVEYPAPVERVWAAFTDE---DYWEARCAALGADNAEVESFEVDGDG-VRVTVRQTVPADKLPSAARKFVGGDLRVTRTE 79 (159)
T ss_pred EEEcCCCHHHHHHHHcCH---HHHHHHHHHcCCCCceEEEEEEcCCe-EEEEEEEecChhhCCHHHHHhcCCCeEEEEEE
Confidence 478999999999996543 57777777777755565655554443 22222222332 112 223333455555
Q ss_pred EEEEeeCCeEEEEEeEeeCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEeeeccchhhhhcchHHHHHHHHHH
Q 006377 360 KFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAM 439 (648)
Q Consensus 360 ki~~~~~~~~VIetst~t~DVPYGD~F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~~~~ 439 (648)
+....++..+-.+.....+ |.-..+.....++..+ .+|++.+...|+- |=+++-++||+.+.+.+.+.+..
T Consensus 80 ~w~~~~~g~~~g~~~~~~~----G~P~~~~G~~~L~~~~----~gt~~~~~g~v~v-~VPlvGgkiE~~v~~~~~~~~~~ 150 (159)
T PF10698_consen 80 TWTPLDDGRRTGTFTVSIP----GAPVSISGTMRLRPDG----GGTRLTVEGEVKV-KVPLVGGKIEKAVAENLRKLLEA 150 (159)
T ss_pred EEecCCCCeEEEEEEEEec----CceEEEEEEEEEecCC----CCEEEEEEEEEEE-EEccccHHHHHHHHHHHHHHHHH
Confidence 5422345566555555544 5557799999998843 3799999988876 55789999999999999888887
Q ss_pred HHHHHHHH
Q 006377 440 WIGMAHDV 447 (648)
Q Consensus 440 wv~~~~e~ 447 (648)
-.+.+.+.
T Consensus 151 e~~~~~~w 158 (159)
T PF10698_consen 151 EQEFTAEW 158 (159)
T ss_pred HHHHHHhh
Confidence 66666554
No 9
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain. Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.
Probab=95.14 E-value=0.095 Score=47.82 Aligned_cols=89 Identities=18% Similarity=0.296 Sum_probs=66.4
Q ss_pred CeeeeEEEEEEee-cceeceEEEEecceEEEEec----cCC-c---------eeEEEEeccccccccccccccccCCeEE
Q 006377 80 EVLVQDFNCAFQE-SILLQGHMYLFVHFICFYSN----IFG-F---------ETKKIIPFYEVTAVRRAKTAGIFPNAIE 144 (648)
Q Consensus 80 E~LI~~f~CaL~r-~i~~~GrLYIS~~~iCF~S~----ifg-~---------~tk~vIp~~dI~~I~K~kt~~i~pnaI~ 144 (648)
|+++-+..|.+.. -.-..|++-||.++|+|.-. .+. . .....+++++|..|.+..- .+-+.|++
T Consensus 1 ~~ivls~~~~mVtPl~vvpG~l~ITt~~lyF~~d~~~~~~~~~~~~vl~~~~~~~~~w~ls~Ir~v~~RRy-lLr~~alE 79 (108)
T cd01201 1 GPVLLSTPASLIAPGVVVKGTLSITTTEIFFEVDERDSQFKKIDDEVLSYCEELHGKWPFSEIRAIFSRRY-LLQNTALE 79 (108)
T ss_pred CCeEEEeeeeEEEEEEEeccEEEEecCEEEEEECCccccccccCccceeccccccceeeHHHHHHHHHHhh-hcccceEE
Confidence 5678889999885 45678999999999999952 121 1 1223799999999999865 45678999
Q ss_pred EEecCeEEEEeccCCHHHHHHHHHH
Q 006377 145 IFAAGKKYFFASFLSRDEAFKLITD 169 (648)
Q Consensus 145 I~T~~~k~~F~SF~~RD~a~~lI~~ 169 (648)
|.-.+..-+|-.|.+++.+.+.+..
T Consensus 80 iF~~d~~~~f~~F~~~~~~k~vv~~ 104 (108)
T cd01201 80 LFLASRTSIFFAFPDQNAVKKVVYA 104 (108)
T ss_pred EEEeCCceEEEEeCcHHHHHHHHhh
Confidence 9987655555589988877766653
No 10
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=90.58 E-value=6.5 Score=39.42 Aligned_cols=148 Identities=12% Similarity=0.072 Sum_probs=73.5
Q ss_pred eeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCCCceeEEEEEEeee---eeccCCceeeeeEEEEE
Q 006377 285 AETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPI---KVYFGAKFGSCKETQKF 361 (648)
Q Consensus 285 ~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~rg~tdi~~tpW~~~~~g~~~R~isY~~pl---~~p~GPK~t~c~etQki 361 (648)
.+.++++|++++|..++.|.. ...++...+...+ .-..- +..++ +.|...- ..++.+. .....++.
T Consensus 52 ~~~~i~~~~~~v~~~l~~d~~--~~~~Wd~~~~~~~-----~i~~~-d~~~~-i~y~~~~~~~~~~vs~R--DfV~~r~~ 120 (208)
T cd08868 52 LTGVLDCPAEFLYNELVLNVE--SLPSWNPTVLECK-----IIQVI-DDNTD-ISYQVAAEAGGGLVSPR--DFVSLRHW 120 (208)
T ss_pred EEEEEcCCHHHHHHHHHcCcc--ccceecCcccceE-----EEEEe-cCCcE-EEEEEecCcCCCccccc--ceEEEEEE
Confidence 567899999999998886642 1111111111100 00000 11223 3342111 1122222 22223333
Q ss_pred EEeeCCeEEEEEeEeeCCCCCCC-ceEE---EEEEEEEecCCCCCCceEEEEEEEEEEeeeccchhhhhcchHHHHHHHH
Q 006377 362 RVYRNSHLVIETSQEVHDVPYGD-YFRV---EGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVY 437 (648)
Q Consensus 362 ~~~~~~~~VIetst~t~DVPYGD-~F~V---e~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~~ 437 (648)
...++..+++..+..-+..|-.. +-++ .+.|.|++.+.+. ++|.|...+.+...+ .+=+..|.+.+.+..-+.+
T Consensus 121 ~~~~~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~-~~t~v~~~~~~Dp~G-~iP~~lvN~~~~~~~~~~~ 198 (208)
T cd08868 121 GIRENCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNP-NKCNFTWLLNTDLKG-WLPQYLVDQALASVLLDFM 198 (208)
T ss_pred EecCCeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCC-CceEEEEEEEECCCC-CCcceeeehhhHHHHHHHH
Confidence 33343333334443335566433 3444 4779999986433 489999998888854 3334455555556666666
Q ss_pred HHHHHHHH
Q 006377 438 AMWIGMAH 445 (648)
Q Consensus 438 ~~wv~~~~ 445 (648)
+.+-+.+.
T Consensus 199 ~~Lr~~~~ 206 (208)
T cd08868 199 KHLRKRIA 206 (208)
T ss_pred HHHHHHHh
Confidence 55554443
No 11
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=89.97 E-value=0.86 Score=53.07 Aligned_cols=84 Identities=18% Similarity=0.394 Sum_probs=64.4
Q ss_pred eEEEEEEeecceeceEEEEe----cceEEEEeccC---C---------ceeEEEEeccccccccccccccc---------
Q 006377 84 QDFNCAFQESILLQGHMYLF----VHFICFYSNIF---G---------FETKKIIPFYEVTAVRRAKTAGI--------- 138 (648)
Q Consensus 84 ~~f~CaL~r~i~~~GrLYIS----~~~iCF~S~if---g---------~~tk~vIp~~dI~~I~K~kt~~i--------- 138 (648)
-.|.|-|+++ .|++||+ .=.|||.+.-. + ...-..||+.||.+++|..+.+.
T Consensus 519 v~F~AR~~Gk---kG~v~I~ssa~~P~l~Ftt~~~~~~~d~~~~~~~~~~~~wsv~V~dI~elkKvgGlGWK~KLvVGWa 595 (642)
T PF11696_consen 519 VEFPARYKGK---KGHVYIDSSATPPVLSFTTDKTSSLGDLRLEEREKGHPLWSVPVADIAELKKVGGLGWKGKLVVGWA 595 (642)
T ss_pred eeeeeecCCc---cceEEEecCCCCcEEEEeccCccccccccccccccCceeeEEEhHHhhhhhhcccccceeeEEEeee
Confidence 3799999876 4999998 55789986511 1 13457999999999999855431
Q ss_pred -----cCCeEEEE-ec-CeEEEEeccCCHHHHHHHHHHH
Q 006377 139 -----FPNAIEIF-AA-GKKYFFASFLSRDEAFKLITDG 170 (648)
Q Consensus 139 -----~pnaI~I~-T~-~~k~~F~SF~~RD~a~~lI~~~ 170 (648)
+-+|+.|. +. ++.|.++....||+.|+.|..+
T Consensus 596 ~g~kEv~DGL~I~g~~~g~~y~lTA~~~RDeLFNRLiAm 634 (642)
T PF11696_consen 596 LGEKEVVDGLVIVGDEPGQEYHLTAMPRRDELFNRLIAM 634 (642)
T ss_pred cCCcccccceEEeccCCCCEEEEEecchHHHHHHHHHhc
Confidence 22588888 54 6899999999999999988753
No 12
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=89.63 E-value=13 Score=37.70 Aligned_cols=144 Identities=8% Similarity=0.036 Sum_probs=76.8
Q ss_pred eeeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCCCceeEEEEEEeeee---eccCCceeeeeEEEE
Q 006377 284 VAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIK---VYFGAKFGSCKETQK 360 (648)
Q Consensus 284 v~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~rg~tdi~~tpW~~~~~g~~~R~isY~~pl~---~p~GPK~t~c~etQk 360 (648)
-++.+++++++++|+.++.... ..++ +..+....+-..- +..+ .+.|.+.-. ..++|..- ...+.
T Consensus 49 k~egvi~~~~e~v~~~l~~~e~---r~~W-----d~~~~~~~iie~I-d~~T-~I~~~~~~~~~~~~vspRDf--V~vr~ 116 (204)
T cd08904 49 RVEGIIPESPAKLIQFMYQPEH---RIKW-----DKSLQVYKMLQRI-DSDT-FICHTITQSFAMGSISPRDF--VDLVH 116 (204)
T ss_pred EEEEEecCCHHHHHHHHhccch---hhhh-----cccccceeeEEEe-CCCc-EEEEEecccccCCcccCceE--EEEEE
Confidence 4788999999999999765321 1111 1111111111100 0111 244432211 12555532 22233
Q ss_pred EEEeeCCeEEEEE-eEeeCCC-CCCCceEEEE---EEEEEecCCCCCCceEEEEEEEEEEeeeccchhhhhcchHHHHHH
Q 006377 361 FRVYRNSHLVIET-SQEVHDV-PYGDYFRVEG---LWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRD 435 (648)
Q Consensus 361 i~~~~~~~~VIet-st~t~DV-PYGD~F~Ve~---R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke 435 (648)
...++++.|++-. ++.-+.. |-.++.+-+. -|++.+..+++ ++|+|..++.+... ..+=+..|.+..-..+-+
T Consensus 117 ~~r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p-~~t~l~~~~~~Dlk-G~lP~~vv~~~~~~~~~~ 194 (204)
T cd08904 117 IKRYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENP-AYSKLVMFVQPELR-GNLSRSVIEKTMPTNLVN 194 (204)
T ss_pred EEEeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCC-CceEEEEEEEeCCC-CCCCHHHHHHHhHHHHHH
Confidence 3344566666533 3333443 3455555554 49999987543 38999999998874 456677777766666666
Q ss_pred HHHHHH
Q 006377 436 VYAMWI 441 (648)
Q Consensus 436 ~~~~wv 441 (648)
.+..+-
T Consensus 195 f~~~~~ 200 (204)
T cd08904 195 LILDAK 200 (204)
T ss_pred HHHHHH
Confidence 665543
No 13
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=88.90 E-value=13 Score=37.52 Aligned_cols=140 Identities=9% Similarity=0.039 Sum_probs=79.1
Q ss_pred eeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccC-------C-CceeEEEEEEeeeeec---cCCcee
Q 006377 285 AETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHY-------E-FGYSRDLSFQHPIKVY---FGAKFG 353 (648)
Q Consensus 285 ~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~rg~tdi~~tpW~~~~-------~-g~~~R~isY~~pl~~p---~GPK~t 353 (648)
.+.+++++++++|..+|.|.. . +..|...- . +..+. +.|..-...| +.+..
T Consensus 53 ~e~~i~~~~~~l~~~l~~d~e--~--------------~~~W~~~~~~~~vl~~id~~~~-i~y~~~~p~p~~~vs~RD- 114 (209)
T cd08905 53 LEVVVDQPLDNLYSELVDRME--Q--------------MGEWNPNVKEVKILQRIGKDTL-ITHEVAAETAGNVVGPRD- 114 (209)
T ss_pred EEEEecCCHHHHHHHHHhchh--h--------------hceecccchHHHHHhhcCCCce-EEEEEeccCCCCccCccc-
Confidence 678999999999988887632 1 12232211 0 11122 3333222222 22332
Q ss_pred eeeEEEEEEEeeCCeEEEEEeEeeCCCC-CCCceEE---EEEEEEEecCCCCCCceEEEEEEEEEEeeeccchhhhhcch
Q 006377 354 SCKETQKFRVYRNSHLVIETSQEVHDVP-YGDYFRV---EGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQST 429 (648)
Q Consensus 354 ~c~etQki~~~~~~~~VIetst~t~DVP-YGD~F~V---e~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst 429 (648)
....+.....++.++++..+...+..| .-++.++ .+.|.+++.+.++ ++|++..++.+...+ .+=+..|.+..
T Consensus 115 -~V~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~-~~t~v~~~~~~DpkG-~iP~~lvN~~~ 191 (209)
T cd08905 115 -FVSVRCAKRRGSTCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDP-SKTKLTWLLSIDLKG-WLPKSIINQVL 191 (209)
T ss_pred -eEEEEEEEEcCCcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCC-CceEEEEEEeecCCC-CCCHHHHHHHh
Confidence 222333333444455555555555555 3455544 4679999975432 489999999998854 45566666666
Q ss_pred HHHHHHHHHHHHHHHH
Q 006377 430 LEECRDVYAMWIGMAH 445 (648)
Q Consensus 430 ~~g~ke~~~~wv~~~~ 445 (648)
.+..-+.+..+-+.+.
T Consensus 192 ~~~~~~~~~~Lr~~~~ 207 (209)
T cd08905 192 SQTQVDFANHLRQRMA 207 (209)
T ss_pred HHhHHHHHHHHHHHHh
Confidence 6677777776665554
No 14
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=87.93 E-value=28 Score=35.28 Aligned_cols=144 Identities=15% Similarity=0.136 Sum_probs=78.5
Q ss_pred eeeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCC--------CceeEEEEEEeeeeeccCCce-ee
Q 006377 284 VAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYE--------FGYSRDLSFQHPIKVYFGAKF-GS 354 (648)
Q Consensus 284 v~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~rg~tdi~~tpW~~~~~--------g~~~R~isY~~pl~~p~GPK~-t~ 354 (648)
-.+.++++|++.+|..+|.|-. ....|...-. +...+ +.|........||-+ -.
T Consensus 52 k~~~~v~~~~~~l~~~ll~D~~----------------~~~~W~~~~~~~~vi~~~~~~~~-i~Y~v~~p~~~~pv~~RD 114 (209)
T cd08906 52 ILKAFMQCPAELVYQEVILQPE----------------KMVLWNKTVSACQVLQRVDDNTL-VSYDVAAGAAGGVVSPRD 114 (209)
T ss_pred EEEEEEcCCHHHHHHHHHhChh----------------hccccCccchhhhheeeccCCcE-EEEEEccccccCCCCCCc
Confidence 3578899999999987777653 1133332110 11222 345221111112311 12
Q ss_pred eeEEEEEEEeeCCeEEEEEeEeeCCCC-CCCceEEE---EEEEEEecCCCCCCceEEEEEEEEEEeeeccchhhhhcchH
Q 006377 355 CKETQKFRVYRNSHLVIETSQEVHDVP-YGDYFRVE---GLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTL 430 (648)
Q Consensus 355 c~etQki~~~~~~~~VIetst~t~DVP-YGD~F~Ve---~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~ 430 (648)
.....++...++.++++..+.....+| .-++-+++ +.|.+.+... .+++|++...+.+...+ .+=+.+|.+...
T Consensus 115 fV~~r~~~~~~~~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~-~~~~t~vt~~~~~Dp~G-~lP~~lvN~~~~ 192 (209)
T cd08906 115 FVNVRRIERRRDRYVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSAS-NPSVCTFIWILNTDLKG-RLPRYLIHQSLA 192 (209)
T ss_pred eEEEEEEEecCCcEEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCC-CCCceEEEEEEecCCCC-CCCHHHHHHHHH
Confidence 222233333334444455555555555 55666666 3455554311 23489999888888744 555777777777
Q ss_pred HHHHHHHHHHHHHHHH
Q 006377 431 EECRDVYAMWIGMAHD 446 (648)
Q Consensus 431 ~g~ke~~~~wv~~~~e 446 (648)
+..-+++..+-+.+.+
T Consensus 193 ~~~~~~~~~LR~~~~~ 208 (209)
T cd08906 193 ATMFEFASHLRQRIRD 208 (209)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 7777888777766654
No 15
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=84.80 E-value=31 Score=33.70 Aligned_cols=143 Identities=8% Similarity=0.014 Sum_probs=75.4
Q ss_pred eeeeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCCCceeEEEEEEeeeeec--cCCceeeeeEEEE
Q 006377 283 KVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVY--FGAKFGSCKETQK 360 (648)
Q Consensus 283 ~v~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~rg~tdi~~tpW~~~~~g~~~R~isY~~pl~~p--~GPK~t~c~etQk 360 (648)
.-.+.+++++++++|+++..- +...+|...+....+ +.. .+.+ ..+.|..- +.| +.+. ...-..+
T Consensus 43 ~k~~~~i~~s~e~v~~vi~d~---e~~~~w~~~~~~~~v-ie~---~~~~---~~i~~~~~-~~p~pvs~R--dfv~~~~ 109 (195)
T cd08876 43 FKAVAEVDASIEAFLALLRDT---ESYPQWMPNCKESRV-LKR---TDDN---ERSVYTVI-DLPWPVKDR--DMVLRST 109 (195)
T ss_pred EEEEEEEeCCHHHHHHHHhhh---HhHHHHHhhcceEEE-eec---CCCC---cEEEEEEE-ecccccCCc--eEEEEEE
Confidence 345678999999999997532 233444432222211 111 1111 23333321 222 2222 1111222
Q ss_pred EEEe-eCCeEEEEEeEeeCCCCCCC----ceEEEEEEEEEecCCCCCCceEEEEEEEEEEeeeccchhhhhcchHHHHHH
Q 006377 361 FRVY-RNSHLVIETSQEVHDVPYGD----YFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRD 435 (648)
Q Consensus 361 i~~~-~~~~~VIetst~t~DVPYGD----~F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke 435 (648)
.... ++..++|.......++|-.. .+.....|.|++.++ ++|+|.....+.+. ..+-+..|...+......
T Consensus 110 ~~~~~~~~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~---~~t~vt~~~~~dp~-g~iP~~lv~~~~~~~~~~ 185 (195)
T cd08876 110 TEQDADDGSVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGN---GKTRVTYQAYADPG-GSIPGWLANAFAKDAPYN 185 (195)
T ss_pred EEEcCCCCEEEEEeecCCccCCCCCCeEEceeceeeEEEEECCC---CeEEEEEEEEeCCC-CCCCHHHHHHHHHHHHHH
Confidence 2222 24556665543333355332 356677899999863 38999999999984 567777777665555555
Q ss_pred HHHHHHH
Q 006377 436 VYAMWIG 442 (648)
Q Consensus 436 ~~~~wv~ 442 (648)
.+..+.+
T Consensus 186 ~l~~l~~ 192 (195)
T cd08876 186 TLENLRK 192 (195)
T ss_pred HHHHHHH
Confidence 5554443
No 16
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=84.78 E-value=30 Score=34.98 Aligned_cols=86 Identities=14% Similarity=0.053 Sum_probs=49.8
Q ss_pred eCCeEEEEEeEeeCCCCCCCc-eEE---EEEEEEEecCCCCCCceEEEEEEEEEEeeeccchhhhhcchHHHHHHHHHHH
Q 006377 365 RNSHLVIETSQEVHDVPYGDY-FRV---EGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMW 440 (648)
Q Consensus 365 ~~~~~VIetst~t~DVPYGD~-F~V---e~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~~~~w 440 (648)
++..+++..+...+++|-.+- .++ ...|.|++.++ ++|++...+.+...++ +=+.+|.+-+....-..++.+
T Consensus 121 ~~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~---~~t~vt~~~~~Dp~G~-IP~~lvN~~~~~~~~~~l~~l 196 (222)
T cd08871 121 GGEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGP---KGCTLTYVTQNDPKGS-LPKWVVNKATTKLAPKVMKKL 196 (222)
T ss_pred CCEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCC---CCEEEEEEEecCCCCC-cCHHHHHHHHHHHhHHHHHHH
Confidence 333455666666678885544 333 34689998753 3799999999988653 223333443344444555555
Q ss_pred HHHHHHHH---hhccCC
Q 006377 441 IGMAHDVL---KQKNLE 454 (648)
Q Consensus 441 v~~~~e~l---~~~~~e 454 (648)
.+++.+|- ++++.|
T Consensus 197 ~k~~~~y~~~~~~~~~~ 213 (222)
T cd08871 197 HKAALKYPEWKAKNNPE 213 (222)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 55555443 344444
No 17
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=84.62 E-value=39 Score=32.50 Aligned_cols=143 Identities=15% Similarity=0.170 Sum_probs=82.9
Q ss_pred eeeeeEEecCHHHHHhhhccCCchhHHHHHH-HHcCCcceeeccccccCCCceeEEEEEEeeeeeccCCceeeeeEEEEE
Q 006377 283 KVAETNFQMKVEDFYSLFFSDDTVNFIESFH-RKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKF 361 (648)
Q Consensus 283 ~v~e~~fpisv~~~F~lLFgD~s~~F~~~f~-~~rg~tdi~~tpW~~~~~g~~~R~isY~~pl~~p~GPK~t~c~etQki 361 (648)
...+.+.++|+++||.++.. ..+++.+.. ..-..-++.-+.|.+ ++..|.++|.. |.+. ..-.|++
T Consensus 6 ~~~E~~~~~~a~k~~ka~~~--~~~llpki~P~~i~sve~~eGdgg~---gGSIk~~~f~~------~~~~--~~~Kekv 72 (151)
T PF00407_consen 6 LEVEVEVKVSADKLWKAFKS--SPHLLPKILPHVIKSVEVVEGDGGP---GGSIKKWTFGP------GGPF--KYVKEKV 72 (151)
T ss_dssp EEEEEEESS-HHHHHHHHTT--HHHHHHHHSTTTEEEEEEEESSSST---TT-EEEEEEET------TSSE--EEEEEEE
T ss_pred EEEEEEecCCHHHHHHHHhc--CccchhhhChhhceeEEEEccCCCC---CCeEEEEEecC------CCCc--ceeEEEE
Confidence 45678889999999999755 335655554 222334555688865 36799998875 2222 3347898
Q ss_pred EEeeCCeEEEEEeEeeCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEeeeccchhhhhcc-hHHHHHHHHHHH
Q 006377 362 RVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQS-TLEECRDVYAMW 440 (648)
Q Consensus 362 ~~~~~~~~VIetst~t~DVPYGD~F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEks-t~~g~ke~~~~w 440 (648)
...++....+..+..-.| +.+++..-.....+.+.+. ++|.++.. ++|.+.. +.. .-+...+.+..+
T Consensus 73 e~~D~~~~~~~y~viEGd-~l~~~~~~~~~~~~~~~~~---g~~v~k~t--~~Ye~~~------~~~~~p~~~~~~~~~~ 140 (151)
T PF00407_consen 73 EAIDEENKTITYTVIEGD-VLGDYKSFKSTIQKIPKGD---GGCVVKWT--IEYEKKG------EDVPPPEKYLDFAVGM 140 (151)
T ss_dssp EEEETTTTEEEEEEEEET-TGTTTEEEEEEEEEEEETT---SCEEEEEE--EEEEESS------TSCHHHHHHHHHHHHH
T ss_pred EeecCCCcEEEEEEEecc-ccccEEEEEEEEEecCCCC---CceEEEEE--EEEEecC------CCCCCcHHHHHHHHHH
Confidence 887776444444444344 3455555555555554432 35766544 4454422 222 344556667777
Q ss_pred HHHHHHHHhh
Q 006377 441 IGMAHDVLKQ 450 (648)
Q Consensus 441 v~~~~e~l~~ 450 (648)
.+.+..||-+
T Consensus 141 ~K~ieayLla 150 (151)
T PF00407_consen 141 FKAIEAYLLA 150 (151)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 7777777754
No 18
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=82.46 E-value=37 Score=30.63 Aligned_cols=59 Identities=7% Similarity=-0.018 Sum_probs=36.7
Q ss_pred CCceEEEEEEEEEecCCCCCCceEEEEEEEEEEeeeccchhhhhcchHHHHHHHHHHHHHHHHHH
Q 006377 383 GDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMAHDV 447 (648)
Q Consensus 383 GD~F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~~~~wv~~~~e~ 447 (648)
+..+....+|.+++.+ ++|+|.....+.+.. .++.+.....-...+.....+++.+++.
T Consensus 84 ~~~~~~~~~~~l~~~~----~gT~v~~~~~~~~~g--~l~~l~~~~~~~~~~~~~~~~~~~l~~~ 142 (144)
T cd05018 84 AGFVKGTARVTLEPDG----GGTRLTYTADAQVGG--KLAQLGSRLIDGAARKLINQFFENLASK 142 (144)
T ss_pred CceEEEEEEEEEEecC----CcEEEEEEEEEEEcc--ChhhhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567899999999862 379999999998754 3343333333334444454544444443
No 19
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes. The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.
Probab=80.03 E-value=6.3 Score=34.86 Aligned_cols=59 Identities=14% Similarity=0.272 Sum_probs=39.7
Q ss_pred CCCCeeeeEEEEEEee---cc--eeceEEEEecceEEEEeccCCceeEEEEecccccccccccc
Q 006377 77 PSEEVLVQDFNCAFQE---SI--LLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKT 135 (648)
Q Consensus 77 P~~E~LI~~f~CaL~r---~i--~~~GrLYIS~~~iCF~S~ifg~~tk~vIp~~dI~~I~K~kt 135 (648)
|.+..+...-.+.|.. ++ .-.|++|+|.+.||+.-..-.....+.||+.+|..++...+
T Consensus 12 ~~E~~~~~q~~V~LYdG~~K~~~~q~G~l~LTsHRliw~d~~~~~~~s~~l~L~~i~~~e~~~g 75 (89)
T PF11605_consen 12 PNETIVYQQDGVGLYDGDQKTPNFQNGRLYLTSHRLIWVDDSDPSKHSIALPLSLISHIEYSAG 75 (89)
T ss_dssp TT--EEEEEEEEEEEETTECSTT-SCEEEEEESSEEEEEESSGHCHH-EEEEGGGEEEEEEE-S
T ss_pred CCceEEEEecCeeeEcCCccCccccCCEEEEEeeEEEEEcCCCCceeEEEEEchHeEEEEEEcc
Confidence 3444455677777763 33 34799999999999985543333468999999999966543
No 20
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.83 E-value=6.5 Score=45.48 Aligned_cols=101 Identities=19% Similarity=0.192 Sum_probs=71.2
Q ss_pred hhhhhhhCCCCCCCee-eeEEEEEEeecceeceEEEEecceEEEEeccCCceeEEEEeccccccccccccccccCC--eE
Q 006377 67 SEEYRQLFRLPSEEVL-VQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPN--AI 143 (648)
Q Consensus 67 n~~F~~lF~LP~~E~L-I~~f~CaL~r~i~~~GrLYIS~~~iCF~S~ifg~~tk~vIp~~dI~~I~K~kt~~i~pn--aI 143 (648)
++.....|.+-++|.+ ...|-|-+.. ..-|.|+||+-.|.|.+.--+...-+-+||.=|..|+|..++.-.-| +|
T Consensus 27 ~~~~~~~~~~L~GE~i~~~~y~c~f~G--~~~g~l~lsNyRl~fks~~t~~~~~~~VPLg~Ie~vek~~~~~~g~ns~~L 104 (717)
T KOG4471|consen 27 DENLQVPFPLLPGESIIDEKYICPFLG--AVDGTLALSNYRLYFKSKETDPPFVLDVPLGVIERVEKRGGATSGENSFGL 104 (717)
T ss_pred cccccCcccccCCcccccceecccccc--cccceEEeeeeEEEEEeccCCCceeEeechhhhhhhhhcCccccCCcceeE
Confidence 3346777885455555 4678888876 67899999999999998866656678899999999999875432223 78
Q ss_pred EEEecCe---EEEEeccCC-HHHHHHHHHH
Q 006377 144 EIFAAGK---KYFFASFLS-RDEAFKLITD 169 (648)
Q Consensus 144 ~I~T~~~---k~~F~SF~~-RD~a~~lI~~ 169 (648)
+|+-++. +|-|..+.. |-+.|+.|.+
T Consensus 105 ~i~CKDmr~lR~~fk~~~q~r~~~~e~L~~ 134 (717)
T KOG4471|consen 105 EITCKDMRNLRCAFKQEEQCRRDWFERLNR 134 (717)
T ss_pred EEEeccccceeeecCcccccHHHHHHHHHH
Confidence 8887764 455655553 3344554443
No 21
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=79.67 E-value=6.9 Score=36.36 Aligned_cols=75 Identities=23% Similarity=0.276 Sum_probs=54.0
Q ss_pred ecceeceEEEEecceEEEEeccCCceeEEEEeccccccccccccc--cccCCeEEEEecC-eEEEEeccCCHHHHHHHHH
Q 006377 92 ESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTA--GIFPNAIEIFAAG-KKYFFASFLSRDEAFKLIT 168 (648)
Q Consensus 92 r~i~~~GrLYIS~~~iCF~S~ifg~~tk~vIp~~dI~~I~K~kt~--~i~pnaI~I~T~~-~k~~F~SF~~RD~a~~lI~ 168 (648)
..+.-+|++.|-++-+=||... ..+--+.|||.+|..|...-.. ..+|- ..|.|+. .+|.|++=.+. .+++.|.
T Consensus 19 ~g~~~yGkimiGDkaFEFyn~~-n~~dyIQIPW~eI~~V~a~V~fkgk~I~R-F~I~Tk~~G~f~Fsskd~k-~~Lk~~r 95 (118)
T PF06115_consen 19 LGLGKYGKIMIGDKAFEFYNDR-NVEDYIQIPWEEIDYVIASVSFKGKWIPR-FAIFTKKNGKFTFSSKDSK-KVLKAIR 95 (118)
T ss_pred ecccccCeEEEcccceEeecCC-ChhhcEEeChhheeEEEEEEEECCCEEee-EEEEECCCCEEEEEECChH-HHHHHHH
Confidence 3566899999999999999753 2244589999999999875331 34554 8899985 99999885443 3455544
Q ss_pred H
Q 006377 169 D 169 (648)
Q Consensus 169 ~ 169 (648)
+
T Consensus 96 ~ 96 (118)
T PF06115_consen 96 K 96 (118)
T ss_pred H
Confidence 3
No 22
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=77.71 E-value=4.7 Score=36.70 Aligned_cols=45 Identities=20% Similarity=0.311 Sum_probs=38.0
Q ss_pred chHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 006377 602 SIPWLERRMHYL--KDEMLMVEARLERMWHEHAVLRAQLKDIEQLHK 646 (648)
Q Consensus 602 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (648)
-+.=||.++.|| ++++...+..|.+||-|..-|.++|+.++|+-.
T Consensus 50 Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~ 96 (106)
T PF10805_consen 50 RLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLD 96 (106)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 345577788888 899999999999999999999999999988643
No 23
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=76.05 E-value=57 Score=29.03 Aligned_cols=106 Identities=8% Similarity=0.092 Sum_probs=52.4
Q ss_pred eeeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccC-CCceeEEEEEEeeeeeccCCceeeeeEEEEEE
Q 006377 284 VAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHY-EFGYSRDLSFQHPIKVYFGAKFGSCKETQKFR 362 (648)
Q Consensus 284 v~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~rg~tdi~~tpW~~~~-~g~~~R~isY~~pl~~p~GPK~t~c~etQki~ 362 (648)
-.+.++++|++++|+++-.-.. + ..+.. +...+. +.... ..+..|.+.+. .| . . ..+++.
T Consensus 4 ~~~~~i~a~~~~V~~~l~d~~~--~-~~w~~--~~~~~~---~~~~~~~~g~~~~~~~~------~g-~--~--~~~~i~ 64 (140)
T cd07821 4 TVSVTIDAPADKVWALLSDFGG--L-HKWHP--AVASCE---LEGGGPGVGAVRTVTLK------DG-G--T--VRERLL 64 (140)
T ss_pred EEEEEECCCHHHHHHHHhCcCc--h-hhhcc--CcceEE---eecCCCCCCeEEEEEeC------CC-C--E--EEEEeh
Confidence 3568899999999999764332 2 23322 122221 11111 12334433331 22 1 1 134444
Q ss_pred EeeC--CeEEEEEeEeeCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEe
Q 006377 363 VYRN--SHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFS 416 (648)
Q Consensus 363 ~~~~--~~~VIetst~t~DVPYGD~F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~ 416 (648)
..+. ..+.+... -.+.|+. .....|.++..++ ++|+|.......-.
T Consensus 65 ~~~~~~~~i~~~~~--~~~~~~~---~~~~~~~~~~~~~---~~t~v~~~~~~~~~ 112 (140)
T cd07821 65 ALDDAERRYSYRIV--EGPLPVK---NYVATIRVTPEGD---GGTRVTWTAEFDPP 112 (140)
T ss_pred hcCccCCEEEEEec--CCCCCcc---cceEEEEEEECCC---CccEEEEEEEEecC
Confidence 3322 33333322 1234544 3578899998753 36888877665543
No 24
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=74.70 E-value=5.8 Score=33.28 Aligned_cols=41 Identities=20% Similarity=0.435 Sum_probs=33.3
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006377 602 SIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 642 (648)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (648)
-++|+|..+..|.+.+.--...|++|++++.+|+.+|+.++
T Consensus 12 ~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 12 KLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47888889999999999999999999999999999999886
No 25
>PF06713 bPH_4: Bacterial PH domain; InterPro: IPR009589 This entry is represented by Bacteriophage SP-beta, YolF. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical proteins specific to Oceanobacillus and Bacillus species. Members of this family are typically around 130 residues in length. The function of this family is unknown.
Probab=73.48 E-value=16 Score=30.91 Aligned_cols=64 Identities=19% Similarity=0.272 Sum_probs=46.0
Q ss_pred EecceEEEEeccCCceeEEEEecccccccccccccccc----CCeEEEEecCeEEEEeccCCHHHHHHHHHH
Q 006377 102 LFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIF----PNAIEIFAAGKKYFFASFLSRDEAFKLITD 169 (648)
Q Consensus 102 IS~~~iCF~S~ifg~~tk~vIp~~dI~~I~K~kt~~i~----pnaI~I~T~~~k~~F~SF~~RD~a~~lI~~ 169 (648)
|.+++|.-+.-++ +..||+.+|..|++.++.... ...|+|..++.+.+..|-.++++-...|.+
T Consensus 5 i~~~~L~I~~G~~----~~~I~i~~I~~I~~~~~~~~~~a~S~~rl~I~y~~~~~i~IsP~~~~~FI~~L~k 72 (74)
T PF06713_consen 5 IEDDYLIIKCGFF----KKKIPIEDIRSIRPTKNPLSSPALSLDRLEIYYGKYKSILISPKDKEEFIAELQK 72 (74)
T ss_pred EeCCEEEEEECCc----ccEEEhHHccEEEecCCccccccccccEEEEEECCCCEEEEECCCHHHHHHHHHh
Confidence 3566666665533 222999999999998643322 368999998766789999899887777664
No 26
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=72.78 E-value=6.8 Score=35.90 Aligned_cols=42 Identities=24% Similarity=0.503 Sum_probs=38.9
Q ss_pred ccchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 006377 600 AESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDI 641 (648)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (648)
.||+..|++|+..|+.++.-.+..+.+++.++.-|+..|..+
T Consensus 86 ~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 86 EEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 569999999999999999999999999999999999988765
No 27
>PRK09039 hypothetical protein; Validated
Probab=72.69 E-value=4.6 Score=44.16 Aligned_cols=71 Identities=23% Similarity=0.237 Sum_probs=57.6
Q ss_pred eehhhHHHHHHHH--hheeeeeecCCCceeecCCCcccCCCcccCCCCCCccchHHHHHHhhchhhHHHHHHHHHHHHHH
Q 006377 552 LILVIAFAVIFLM--QVSILVLLNRPQHVHMASPPDYMGAGVGVGLGQRSAESIPWLERRMHYLKDEMLMVEARLERMWH 629 (648)
Q Consensus 552 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (648)
||+|+.|++.||| |++. +. .-.+=.+.|+=|+.+|.-|-|-..|-..+..+|+.
T Consensus 26 ll~~~~f~l~~f~~~q~fL-------------s~-----------~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~ 81 (343)
T PRK09039 26 LLLVIMFLLTVFVVAQFFL-------------SR-----------EISGKDSALDRLNSQIAELADLLSLERQGNQDLQD 81 (343)
T ss_pred HHHHHHHHHHHHHHHHHHH-------------HH-----------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 6788888888777 8776 11 11234567888999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHhhh
Q 006377 630 EHAVLRAQLKDIEQLHK 646 (648)
Q Consensus 630 ~~~~~~~~~~~~~~~~~ 646 (648)
+.+-|++++..++..|.
T Consensus 82 ~l~~l~~~l~~a~~~r~ 98 (343)
T PRK09039 82 SVANLRASLSAAEAERS 98 (343)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998888775
No 28
>PRK00295 hypothetical protein; Provisional
Probab=71.46 E-value=11 Score=31.62 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=37.2
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006377 602 SIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 642 (648)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (648)
-+++.|.-|..|-+.+.--...|.+|++...+|+.+|++++
T Consensus 13 kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 13 RQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 37888999999999999999999999999999999999876
No 29
>PRK02793 phi X174 lysis protein; Provisional
Probab=71.03 E-value=10 Score=32.17 Aligned_cols=41 Identities=15% Similarity=0.227 Sum_probs=36.7
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006377 602 SIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 642 (648)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (648)
-+++.|+-|..|-+.+.--...+.+|+++..+|+.+|+.++
T Consensus 16 ~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 16 RLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 37888899999999999999999999999999999998875
No 30
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=68.87 E-value=1.1e+02 Score=29.11 Aligned_cols=121 Identities=15% Similarity=0.107 Sum_probs=60.7
Q ss_pred eeeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCCCceeEEEEEEeeeeeccCCceeeeeEEEEEEE
Q 006377 284 VAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRV 363 (648)
Q Consensus 284 v~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~rg~tdi~~tpW~~~~~g~~~R~isY~~pl~~p~GPK~t~c~etQki~~ 363 (648)
-...++++|+++++.+|+..+. ...+-.. ..+..+-.. ...+.......|..| .|+.|..--+. .....
T Consensus 42 k~~~~i~~~~~~v~~~l~d~~~---~~~w~~~--~~~~~vl~~--~~~~~~i~~~~~~~p--~p~~~Rdfv~~--~~~~~ 110 (193)
T cd00177 42 KAEGVIPASPEQVFELLMDIDL---RKKWDKN--FEEFEVIEE--IDEHTDIIYYKTKPP--WPVSPRDFVYL--RRRRK 110 (193)
T ss_pred EEEEEECCCHHHHHHHHhCCch---hhchhhc--ceEEEEEEE--eCCCeEEEEEEeeCC--CccCCccEEEE--EEEEE
Confidence 3678899999999999876332 1222111 111111000 011111122222222 22344322111 12222
Q ss_pred ee-CCeEEEEEeEeeCCCCCC-CceEEEEE---EEEEecCCCCCCceEEEEEEEEEEeee
Q 006377 364 YR-NSHLVIETSQEVHDVPYG-DYFRVEGL---WDVMRDDGGSKEGCILRVYVNVAFSKK 418 (648)
Q Consensus 364 ~~-~~~~VIetst~t~DVPYG-D~F~Ve~R---~~It~~~~~sk~~C~L~V~~~V~F~Ks 418 (648)
.. +..+++..+...+.+|-. ++-+.+.. |+|++.+ +++|++.....+...++
T Consensus 111 ~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~---~~~~~vt~~~~~D~~g~ 167 (193)
T cd00177 111 LDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLD---PGKTKVTYVLQVDPKGS 167 (193)
T ss_pred cCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECC---CCCEEEEEEEeeCCCCC
Confidence 23 444555555444446654 66666544 9999884 24899999999988654
No 31
>COG4687 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.53 E-value=8.3 Score=35.51 Aligned_cols=65 Identities=23% Similarity=0.168 Sum_probs=48.1
Q ss_pred ceeceEEEEecceEEEEeccCCceeEEEEecccccccccccccc-ccCCeEEEEec-CeEEEEeccCCH
Q 006377 94 ILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAG-IFPNAIEIFAA-GKKYFFASFLSR 160 (648)
Q Consensus 94 i~~~GrLYIS~~~iCF~S~ifg~~tk~vIp~~dI~~I~K~kt~~-i~pnaI~I~T~-~~k~~F~SF~~R 160 (648)
+--.|++-|-..-+=||.+. ..+.-+.|||.+|..|-...+.. +.| -..|.|+ +.+|.|+|=.+-
T Consensus 21 ~~~~GkiliGDkgfEFYn~~-nv~k~iqipWs~i~~v~vsvs~KK~~~-~f~i~td~~gk~~FaSkdsg 87 (122)
T COG4687 21 FAEYGKILIGDKGFEFYNDR-NVEKFIQIPWSEINEVDVSVSLKKWGR-QFSIFTDTQGKVRFASKDSG 87 (122)
T ss_pred hhhcCeEEEcccceeecCCC-ChhheeEecHHHhheeheeehhhhhcc-eEEEEEcCCceEEEEeCCch
Confidence 34579999999999998664 33566899999999876544433 333 5678887 699999986543
No 32
>smart00338 BRLZ basic region leucin zipper.
Probab=68.14 E-value=10 Score=31.11 Aligned_cols=38 Identities=29% Similarity=0.414 Sum_probs=31.7
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006377 602 SIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLK 639 (648)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (648)
-+.=||.+++.|..|-.-..+.++.|+.|+..||.++.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35568888888988888888889999999998888764
No 33
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=67.64 E-value=8.5 Score=34.94 Aligned_cols=43 Identities=21% Similarity=0.400 Sum_probs=30.0
Q ss_pred CccchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 006377 599 SAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDI 641 (648)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (648)
-.||+++|++|+..|++.+...+..+..++.....+.+.|..+
T Consensus 75 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 117 (120)
T PF02996_consen 75 LEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQL 117 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999988776666666666655555555554443
No 34
>PRK04325 hypothetical protein; Provisional
Probab=66.98 E-value=14 Score=31.54 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=36.4
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006377 602 SIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 642 (648)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (648)
-+++.|+-|..|.+.+.--...|.+|++...+|+.+|+.++
T Consensus 17 klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 17 QLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36888888999999999999999999999999999998875
No 35
>PRK04406 hypothetical protein; Provisional
Probab=66.57 E-value=14 Score=31.64 Aligned_cols=41 Identities=12% Similarity=0.301 Sum_probs=35.1
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006377 602 SIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 642 (648)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (648)
-|++.|.-|..|-+.|.--...+++|++++.+|+.+|+.++
T Consensus 19 ~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 19 QLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 36788888888889988888889999999999998888765
No 36
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=66.50 E-value=1.3e+02 Score=30.58 Aligned_cols=121 Identities=7% Similarity=-0.025 Sum_probs=61.5
Q ss_pred eeeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCCCceeEEEEEEeeeeecc--CCceeeeeEEEEE
Q 006377 284 VAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYF--GAKFGSCKETQKF 361 (648)
Q Consensus 284 v~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~rg~tdi~~tpW~~~~~g~~~R~isY~~pl~~p~--GPK~t~c~etQki 361 (648)
..+.++++|+++++++|..-... .++.......++-. +. +...+-+.++.+..-|+ -+. .....++.
T Consensus 48 ~ge~~v~as~~~v~~ll~D~~~r---~~Wd~~~~~~~vl~---~~---~~d~~i~y~~~~~Pwp~~~~~R--DfV~l~~~ 116 (205)
T cd08874 48 LGAGVIKAPLATVWKAVKDPRTR---FLYDTMIKTARIHK---TF---TEDICLVYLVHETPLCLLKQPR--DFCCLQVE 116 (205)
T ss_pred EEEEEEcCCHHHHHHHHhCcchh---hhhHHhhhheeeee---ec---CCCeEEEEEEecCCCCCCCCCC--eEEEEEEE
Confidence 35788999999999998332211 12222222222211 11 12234444444432222 222 22222332
Q ss_pred EEeeCCeEEEEEeEeeC-CCC-CC-Cc---eEEEEEEEEEecCCCCCCceEEEEEEEEEEe
Q 006377 362 RVYRNSHLVIETSQEVH-DVP-YG-DY---FRVEGLWDVMRDDGGSKEGCILRVYVNVAFS 416 (648)
Q Consensus 362 ~~~~~~~~VIetst~t~-DVP-YG-D~---F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~ 416 (648)
...++.++|......+ .+| -. ++ +.+.+.|.|++...+++++|+|...+.+.=.
T Consensus 117 -~~~~~~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPg 176 (205)
T cd08874 117 -AKEGELSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALC 176 (205)
T ss_pred -EECCCcEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCC
Confidence 3444555554443333 566 33 34 5567789999973333458999988888754
No 37
>PRK02119 hypothetical protein; Provisional
Probab=66.42 E-value=15 Score=31.38 Aligned_cols=41 Identities=17% Similarity=0.320 Sum_probs=35.4
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006377 602 SIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 642 (648)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (648)
-+++.|+-+..|-+.+.--...|.+|++++.+|+.+|+.++
T Consensus 17 rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 17 KIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 36788888888899888888889999999999999888875
No 38
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=66.25 E-value=1.5e+02 Score=29.83 Aligned_cols=151 Identities=8% Similarity=0.016 Sum_probs=79.5
Q ss_pred eeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCCCceeEEEEEEeeee--eccCCceeeeeEEEEEE
Q 006377 285 AETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIK--VYFGAKFGSCKETQKFR 362 (648)
Q Consensus 285 ~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~rg~tdi~~tpW~~~~~g~~~R~isY~~pl~--~p~GPK~t~c~etQki~ 362 (648)
.+.+++++++++|.+++.... .+-.++...+...++ -..- +..+..+.+..|-. ..+.|.. ....+...
T Consensus 50 ~e~~i~~s~~~~~~~l~d~~~-~~r~~W~~~~~~~~v-----le~i-d~~~~i~~~~~p~~~~~~vs~RD--fV~~~~~~ 120 (208)
T cd08903 50 GEGIVYATLEQVWDCLKPAAG-GLRVKWDQNVKDFEV-----VEAI-SDDVSVCRTVTPSAAMKIISPRD--FVDVVLVK 120 (208)
T ss_pred EEEEecCCHHHHHHHHHhccc-hhhhhhhhccccEEE-----EEEe-cCCEEEEEEecchhcCCCcCCCc--eEEEEEEE
Confidence 778999999999999874321 111111111111111 0000 11122222222211 1133432 22234444
Q ss_pred EeeCCeEEEEEeEeeC-CC-CCCCceEEEEE---EEEEecCCCCCCceEEEEEEEEEEeeeccchhhhhcchHHHHHHHH
Q 006377 363 VYRNSHLVIETSQEVH-DV-PYGDYFRVEGL---WDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVY 437 (648)
Q Consensus 363 ~~~~~~~VIetst~t~-DV-PYGD~F~Ve~R---~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~~ 437 (648)
..++..+++......+ .. |-.++.+++.. |.+.....+ .++|++..++.+.+ |..+=+..|.+...+.+.+.+
T Consensus 121 ~~~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~-~~~t~v~~~~~~Dp-kG~iP~~lvn~~~~~~~~~~~ 198 (208)
T cd08903 121 RYEDGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGE-PDKTQLVSFFQTDL-SGYLPQTVVDSFFPASMAEFY 198 (208)
T ss_pred ecCCceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCC-CCceEEEEEEEecc-CCCcCHHHHHHHhhHHHHHHH
Confidence 4555556554433333 33 34677777443 455555432 34899999999998 445557777777777777888
Q ss_pred HHHHHHHHH
Q 006377 438 AMWIGMAHD 446 (648)
Q Consensus 438 ~~wv~~~~e 446 (648)
..+-+++++
T Consensus 199 ~~Lr~~~~~ 207 (208)
T cd08903 199 NNLTKAVKA 207 (208)
T ss_pred HHHHHHHhh
Confidence 777766654
No 39
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=65.37 E-value=1.4e+02 Score=29.21 Aligned_cols=148 Identities=7% Similarity=0.014 Sum_probs=75.6
Q ss_pred eeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCCCceeEEEEEEeeeee-ccCCceeeeeEEEEEEE
Q 006377 285 AETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKV-YFGAKFGSCKETQKFRV 363 (648)
Q Consensus 285 ~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~rg~tdi~~tpW~~~~~g~~~R~isY~~pl~~-p~GPK~t~c~etQki~~ 363 (648)
...+++.++.++|..++.|.. ...++.......++ +... ..+ .+-+.|...... |+.|.. .....+...
T Consensus 49 ~~~~v~~~~~~~~~~~~~d~~--~r~~Wd~~~~~~~~-ie~~---~~~--~~i~~~~~~~~~~p~~~RD--fv~~r~~~~ 118 (206)
T smart00234 49 AVGVVPMVCADLVEELMDDLR--YRPEWDKNVAKAET-LEVI---DNG--TVIYHYVSKFVAGPVSPRD--FVFVRYWRE 118 (206)
T ss_pred EEEEEecChHHHHHHHHhccc--chhhCchhcccEEE-EEEE---CCC--CeEEEEEEecccCcCCCCe--EEEEEEEEE
Confidence 567888888887776676642 22333222221111 1111 112 232333332222 333331 111122222
Q ss_pred eeCCeEEE-EEeEeeCCCC-CCCceE---EEEEEEEEecCCCCCCceEEEEEEEEEEeeeccchhhhhcchHHHHHHHHH
Q 006377 364 YRNSHLVI-ETSQEVHDVP-YGDYFR---VEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYA 438 (648)
Q Consensus 364 ~~~~~~VI-etst~t~DVP-YGD~F~---Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~~~ 438 (648)
..++.|+| ..+...+..| -..+.+ ....|+|++.++ +.|++.....+...+. +=+..+..-.....-..++
T Consensus 119 ~~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~---~~t~vt~~~~~D~~G~-iP~~lvn~~~~~~~~~~~~ 194 (206)
T smart00234 119 LVDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGN---GPSKVTWVSHADLKGW-LPHWLVRSLIKSGLAEFAK 194 (206)
T ss_pred cCCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCC---CCeEEEEEEEEecCCC-ccceeehhhhhhhHHHHHH
Confidence 34444544 4355555666 344443 457899998753 3699999999998653 3455555555556666666
Q ss_pred HHHHHHHH
Q 006377 439 MWIGMAHD 446 (648)
Q Consensus 439 ~wv~~~~e 446 (648)
.|.+.+++
T Consensus 195 ~~~~~~~~ 202 (206)
T smart00234 195 TWVATLQK 202 (206)
T ss_pred HHHHHHHH
Confidence 66555444
No 40
>PRK00736 hypothetical protein; Provisional
Probab=65.15 E-value=17 Score=30.56 Aligned_cols=41 Identities=17% Similarity=0.235 Sum_probs=37.1
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006377 602 SIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 642 (648)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (648)
-+++.|+-|..|-+.+.--...|.+|++...+|+.+|+.++
T Consensus 13 klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 13 RVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 37889999999999999999999999999999999998865
No 41
>PRK00846 hypothetical protein; Provisional
Probab=64.25 E-value=18 Score=31.34 Aligned_cols=40 Identities=13% Similarity=0.093 Sum_probs=36.6
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006377 603 IPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 642 (648)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (648)
++|.|.-|..|-+.+.--...+.+|++...+|+.+|+.++
T Consensus 22 lAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 22 LSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6788888889999999999999999999999999999886
No 42
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=64.02 E-value=1.2e+02 Score=28.03 Aligned_cols=44 Identities=14% Similarity=0.047 Sum_probs=30.0
Q ss_pred CCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEeeec--cchhhhhc
Q 006377 380 VPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKT--VWKGKIVQ 427 (648)
Q Consensus 380 VPYGD~F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT--~~K~~IEk 427 (648)
.+.+....+...|.+...+ ++|+|.+...+.+...- +++..|.+
T Consensus 82 ~~~~g~~~~~~~~~l~~~~----~gT~v~~~~~~~~~g~l~~l~~~~v~~ 127 (146)
T cd07823 82 ARGQGTAEATVTLRLSPAG----GGTRVTVDTDLALTGKLAQFGRGGIGD 127 (146)
T ss_pred CCCcceEEEEEEEEEEecC----CcEEEEEEEEEEEeeEhHHhChhHHHH
Confidence 4445556888889898732 37999999999876542 44555554
No 43
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=63.08 E-value=1.2e+02 Score=30.22 Aligned_cols=117 Identities=8% Similarity=-0.000 Sum_probs=59.0
Q ss_pred eeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCC-CceeEEEEEEeeeeeccCCceeeeeEEEE-EE
Q 006377 285 AETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYE-FGYSRDLSFQHPIKVYFGAKFGSCKETQK-FR 362 (648)
Q Consensus 285 ~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~rg~tdi~~tpW~~~~~-g~~~R~isY~~pl~~p~GPK~t~c~etQk-i~ 362 (648)
.+.++++++++++.+++.. +...|-.+..+..-+. +....-+.|..+...|+-+. .....+. ..
T Consensus 48 ~~~~v~a~~~~v~~~l~d~------------r~~Wd~~~~~~~vie~id~~~~i~y~~~~~p~pv~~R--DfV~~r~~~~ 113 (197)
T cd08869 48 ASTEVEAPPEEVLQRILRE------------RHLWDDDLLQWKVVETLDEDTEVYQYVTNSMAPHPTR--DYVVLRTWRT 113 (197)
T ss_pred EEEEeCCCHHHHHHHHHHH------------HhccchhhheEEEEEEecCCcEEEEEEeeCCCCCCCc--eEEEEEEEEe
Confidence 5688999999999887532 1112222222221111 11122233443332222222 2221211 11
Q ss_pred EeeCCeEEEEEeEe-e-CCCCCCCceE---EEEEEEEEecCCCCCCceEEEEEEEEEEeeec
Q 006377 363 VYRNSHLVIETSQE-V-HDVPYGDYFR---VEGLWDVMRDDGGSKEGCILRVYVNVAFSKKT 419 (648)
Q Consensus 363 ~~~~~~~VIetst~-t-~DVPYGD~F~---Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT 419 (648)
..++..|+|..... . ..+|= ++.+ ..+.|.|++.++ ++|+|...+.+...+..
T Consensus 114 ~~~~g~~~i~~~Sv~~~~~~p~-g~VR~~~~~~g~~i~p~~~---~~t~vty~~~~Dp~G~i 171 (197)
T cd08869 114 DLPKGACVLVETSVEHTEPVPL-GGVRAVVLASRYLIEPCGS---GKSRVTHICRVDLRGRS 171 (197)
T ss_pred cCCCCcEEEEEECCcCCCCCCC-CCEEEEEEeeeEEEEECCC---CCeEEEEEEEECCCCCC
Confidence 22333455444333 2 25654 5544 457899999753 48999999999986654
No 44
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=61.08 E-value=1.8e+02 Score=29.22 Aligned_cols=150 Identities=9% Similarity=0.000 Sum_probs=72.2
Q ss_pred eeeEE-ecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCCCceeEEEEEEeeeeeccCCceeeeeEEEEEEE
Q 006377 285 AETNF-QMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRV 363 (648)
Q Consensus 285 ~e~~f-pisv~~~F~lLFgD~s~~F~~~f~~~rg~tdi~~tpW~~~~~g~~~R~isY~~pl~~p~GPK~t~c~etQki~~ 363 (648)
...+| ++|+++|++++...+ +..++...+....+... .. ...++-+-|....-.|+-+. ......++..
T Consensus 49 ~~~~~~d~s~~~~~~~~~D~~---~r~~Wd~~~~~~~~le~----~~-~~~~~i~y~~~~~P~P~s~R--D~V~~r~~~~ 118 (207)
T cd08911 49 VYGSFDDVTARDFLNVQLDLE---YRKKWDATAVELEVVDE----DP-ETGSEIIYWEMQWPKPFANR--DYVYVRRYII 118 (207)
T ss_pred EEEEEcCCCHHHHHHHHhCHH---HHHHHHhhheeEEEEEc----cC-CCCCEEEEEEEECCCCCCCc--cEEEEEEEEE
Confidence 34567 899999999987543 44444443332222111 00 11233333322222222222 2222233322
Q ss_pred eeC-CeEEEEEeEe-eCCCCCCC-ceE---EEEEEEEEecCCCCCCceEEEEEEEEEEeeeccchhhhhcchHHHHHHHH
Q 006377 364 YRN-SHLVIETSQE-VHDVPYGD-YFR---VEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVY 437 (648)
Q Consensus 364 ~~~-~~~VIetst~-t~DVPYGD-~F~---Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~~ 437 (648)
..+ ..++|..... -+.+|-.+ +-+ ..+.|+|++..+..+++|++...+...- |..+=+.++..-+..+.-+.+
T Consensus 119 ~~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dP-gG~IP~~lvN~~~~~~~~~~l 197 (207)
T cd08911 119 DEENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNP-GVNIPSYITSWVAMSGMPDFL 197 (207)
T ss_pred cCCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCC-CCccCHHHHHHHHHhhccHHH
Confidence 223 3445444333 23777554 333 4678999987422234788876666544 223334555555555666655
Q ss_pred HHHHHHHH
Q 006377 438 AMWIGMAH 445 (648)
Q Consensus 438 ~~wv~~~~ 445 (648)
+.+-+.+.
T Consensus 198 ~~l~~a~~ 205 (207)
T cd08911 198 ERLRNAAL 205 (207)
T ss_pred HHHHHHHh
Confidence 55555443
No 45
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=60.76 E-value=1.9e+02 Score=29.03 Aligned_cols=150 Identities=9% Similarity=0.040 Sum_probs=77.6
Q ss_pred eeeEE-ecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCCCceeEEEEEEeeeeeccCCceeeeeEEEEEEE
Q 006377 285 AETNF-QMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRV 363 (648)
Q Consensus 285 ~e~~f-pisv~~~F~lLFgD~s~~F~~~f~~~rg~tdi~~tpW~~~~~g~~~R~isY~~pl~~p~GPK~t~c~etQki~~ 363 (648)
...+| ++|++.|++++...+ +..++...+....+- . ..+ ....+.+-|......|+-+.. .....+...
T Consensus 54 ~~~~~~~~s~~~~~~~l~D~~---~r~~Wd~~~~~~~~l-e---~~~-~~~~~i~y~~~~~P~P~s~RD--~V~~r~~~~ 123 (209)
T cd08870 54 VRGVFEDCTPELLRDFYWDDE---YRKKWDETVIEHETL-E---EDE-KSGTEIVRWVKKFPFPLSDRE--YVIARRLWE 123 (209)
T ss_pred EEEEEcCCCHHHHHHHHcChh---hHhhhhhheeeEEEE-E---ecC-CCCcEEEEEEEECCCcCCCce--EEEEEEEEE
Confidence 45677 679999999986543 334443332222211 1 111 112344444333333343332 221222222
Q ss_pred eeCCeEE-EEEeEeeCCCCCCCceEE---EEEEEEEecCCCCCCceEEEEEEEEEEeeeccchhhhhcchHHHHHHHHHH
Q 006377 364 YRNSHLV-IETSQEVHDVPYGDYFRV---EGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAM 439 (648)
Q Consensus 364 ~~~~~~V-Ietst~t~DVPYGD~F~V---e~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~~~~ 439 (648)
..++.++ +.....-+.+|-.++-+| ...|+|++... .+++|++.+.+...- +..+=+.++...+..++-..++.
T Consensus 124 ~~~~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~-~~~~t~~~~~~~~dp-~G~IP~wlvN~~~~~~~~~~l~~ 201 (209)
T cd08870 124 SDDRSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKG-DGQGSACEVTYFHNP-DGGIPRELAKLAVKRGMPGFLKK 201 (209)
T ss_pred cCCCEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecC-CCCceEEEEEEEECC-CCCCCHHHHHHHHHhhhHHHHHH
Confidence 2244444 444444457886545444 46799998731 123677766666653 44455666666677777777777
Q ss_pred HHHHHHH
Q 006377 440 WIGMAHD 446 (648)
Q Consensus 440 wv~~~~e 446 (648)
+.+.+.+
T Consensus 202 l~~a~~~ 208 (209)
T cd08870 202 LENALRK 208 (209)
T ss_pred HHHHHhc
Confidence 6665543
No 46
>PRK10724 hypothetical protein; Provisional
Probab=60.59 E-value=1.7e+02 Score=28.39 Aligned_cols=34 Identities=15% Similarity=0.350 Sum_probs=25.9
Q ss_pred EEEEEEEEEecCCCCCCceEEEEEEEEEEeeeccchhh
Q 006377 387 RVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGK 424 (648)
Q Consensus 387 ~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~ 424 (648)
..++.|.+.+.++ ++|+|.....++| |+.++...
T Consensus 98 ~l~g~W~f~p~~~---~~t~V~~~l~fef-~s~l~~~~ 131 (158)
T PRK10724 98 KLIGGWKFTPLSQ---EACRIEFHLDFEF-TNKLIELA 131 (158)
T ss_pred hccceEEEEECCC---CCEEEEEEEEEEE-chHHHHHH
Confidence 3899999999763 3799999988887 55665533
No 47
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=55.43 E-value=32 Score=30.22 Aligned_cols=47 Identities=26% Similarity=0.336 Sum_probs=40.2
Q ss_pred cchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhc
Q 006377 601 ESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLHKR 647 (648)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (648)
.-+.+|+.++..++.+...++..++..|.++.--....|-+|.|+.+
T Consensus 52 ~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L~e~ 98 (123)
T PF02050_consen 52 RYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLEKLKER 98 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999999999999999988888888888888753
No 48
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=54.43 E-value=23 Score=36.75 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=36.9
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q 006377 606 LERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLH 645 (648)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (648)
.|+|+..+.||....+++++.+..|..+|+.+.+.|+++-
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v 79 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQV 79 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999998764
No 49
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=53.88 E-value=13 Score=33.16 Aligned_cols=39 Identities=21% Similarity=0.224 Sum_probs=33.3
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006377 604 PWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 642 (648)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (648)
+....++.-|++++..+|+++++++.+...++++++-|+
T Consensus 66 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L~ 104 (104)
T PF13600_consen 66 ESDSPELKELEEELEALEDELAALQDEIQALEAQIAFLQ 104 (104)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 345678899999999999999999999999999988774
No 50
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=50.43 E-value=37 Score=30.89 Aligned_cols=31 Identities=13% Similarity=0.224 Sum_probs=20.6
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 006377 606 LERRMHYLKDEMLMVEARLERMWHEHAVLRA 636 (648)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (648)
+++++..++.|..-++++-++|++|...||.
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 5566666666666666666666666666665
No 51
>PF04707 PRELI: PRELI-like family; InterPro: IPR006797 These proteins contain a conserved region found in the yeast YLR168C gene MSF1 product. The function of this protein is unknown, though it is thought to be involved in intra-mitochondrial protein sorting. GFP-tagged MSF1 localizes to mitochondria and is required for wild-type respiratory growth []. This region is also found in a number of other eukaryotic proteins. The PRELI/MSF1 domain is an eukaryotic protein module which occurs in stand-alone form in several proteins, including the human PRELI protein and the yeast MSF1 protein, and as an amino-terminal domain in an orthologous group of proteins typified by human SEC14L1, which is conserved in all animals. In this group of proteins, the PRELI/MSF1 domain co-occurs with the CRAL-TRIO (see PDOC50191 from PROSITEDOC) and the GOLD domains (see PDOC50866 from PROSITEDOC). The PRELI/MSF1 domain is approximately 170 residues long and is predicted to assume a globular alpha + beta fold with six beta strands and four alpha helices. It has been suggested that the PRELI/MSF1 domain may have a function associated with cellular membrane [].
Probab=50.21 E-value=2.4e+02 Score=27.17 Aligned_cols=74 Identities=7% Similarity=0.088 Sum_probs=55.6
Q ss_pred eeCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEee-eccchhhhhcchHHHHHHHHHHHHHHHHHHHhh
Q 006377 376 EVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSK-KTVWKGKIVQSTLEECRDVYAMWIGMAHDVLKQ 450 (648)
Q Consensus 376 ~t~DVPYGD~F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~K-sT~~K~~IEkst~~g~ke~~~~wv~~~~e~l~~ 450 (648)
.+..+=|.+.+.|+.+....+.+.++ +.|.+.-.+.|...+ ...|.+.||+-..+..+..+.+=.+.....+++
T Consensus 79 ~t~Nls~~~~~~v~E~~~Y~~~p~np-~~T~~~q~a~i~~~~~~~~~~~~iE~~~~~~f~~na~kgr~~~e~vi~~ 153 (157)
T PF04707_consen 79 KTRNLSFSSFLSVEETCVYKPHPDNP-NWTLFKQEATISIKGSFSGFSSRIEKFSVSRFKSNAKKGREGMEWVIKK 153 (157)
T ss_pred EEEEcccCceeEEEEEEEEEECCCCC-CcceEEEEEEEEEeCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566789999999999999987665 489999999998654 246889999988888777766655444444443
No 52
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=48.45 E-value=22 Score=29.26 Aligned_cols=30 Identities=30% Similarity=0.338 Sum_probs=25.1
Q ss_pred CCccchHHHHHHhhchhhHHHHHHHHHHHH
Q 006377 598 RSAESIPWLERRMHYLKDEMLMVEARLERM 627 (648)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (648)
-|.=|++=|+.||.+|+.|+.-+|+.+.+=
T Consensus 18 Ls~lSv~EL~~RIa~L~aEI~R~~~~~~~K 47 (59)
T PF06698_consen 18 LSLLSVEELEERIALLEAEIARLEAAIAKK 47 (59)
T ss_pred chhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566689999999999999998888877653
No 53
>PF04283 CheF-arch: Chemotaxis signal transduction system protein F from archaea; InterPro: IPR007381 This is an archaeal protein of unknown function.
Probab=47.08 E-value=76 Score=32.72 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=30.9
Q ss_pred ceeceEEEEecceEEEEeccCCceeEEEEecccccccccc
Q 006377 94 ILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRA 133 (648)
Q Consensus 94 i~~~GrLYIS~~~iCF~S~ifg~~tk~vIp~~dI~~I~K~ 133 (648)
-...||+.+|++.|+|..+ ..|+.|||++|.+|...
T Consensus 24 ~W~~~rIiLs~~rlvl~~~----~~k~~Ipls~I~Di~~~ 59 (221)
T PF04283_consen 24 KWVKGRIILSNDRLVLAFN----DGKITIPLSSIEDIGVR 59 (221)
T ss_pred CcEEEEEEEecCEEEEEcC----CCeEEEecceeEecccc
Confidence 3577999999999999874 46789999999999874
No 54
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=46.79 E-value=55 Score=29.32 Aligned_cols=53 Identities=8% Similarity=0.157 Sum_probs=36.8
Q ss_pred EEecceEEEEeccCCceeEEEEecccccccccccccc-ccCCeEEEEecCeEEEE
Q 006377 101 YLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAG-IFPNAIEIFAAGKKYFF 154 (648)
Q Consensus 101 YIS~~~iCF~S~ifg~~tk~vIp~~dI~~I~K~kt~~-i~pnaI~I~T~~~k~~F 154 (648)
-++.+.|++|..- +..-+=.||+.+|..|+...... -.++.++|.|.+..|++
T Consensus 27 ~Lt~~~L~Y~k~~-~~~~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~~r~~yi 80 (98)
T cd01244 27 QLTTTHLSWAKDV-QCKKSALIKLAAIKGTEPLSDKSFVNVDIITIVCEDDTMQL 80 (98)
T ss_pred EECCCEEEEECCC-CCceeeeEEccceEEEEEcCCcccCCCceEEEEeCCCeEEE
Confidence 3466677777543 34566799999999998765422 13679999998765544
No 55
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=46.34 E-value=42 Score=31.54 Aligned_cols=44 Identities=23% Similarity=0.348 Sum_probs=37.5
Q ss_pred CccchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006377 599 SAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 642 (648)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (648)
-.||+.-|++|+..|.+.+...+..++.++.++..+...|..+.
T Consensus 92 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 92 LDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999888888888888888888888877764
No 56
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=46.12 E-value=49 Score=30.00 Aligned_cols=58 Identities=21% Similarity=0.235 Sum_probs=39.5
Q ss_pred EEEecceEEEEecc-CCceeEEEEeccccccccccccc---cccCCeEEEEecCeEEEEecc
Q 006377 100 MYLFVHFICFYSNI-FGFETKKIIPFYEVTAVRRAKTA---GIFPNAIEIFAAGKKYFFASF 157 (648)
Q Consensus 100 LYIS~~~iCF~S~i-fg~~tk~vIp~~dI~~I~K~kt~---~i~pnaI~I~T~~~k~~F~SF 157 (648)
..++.++|+++..- ......-+|++.++..|+..... .-.||+++|.|.+..|+|..=
T Consensus 24 F~L~~~~L~y~K~~~~~~~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp~rt~~l~A~ 85 (101)
T cd01264 24 FTLSGAQLLFQKGKSKDDPDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTADKTYILKAK 85 (101)
T ss_pred EEEeCCEEEEEeccCccCCCCceEEcccceEEeeccccccccccCcEEEEEcCCceEEEEeC
Confidence 45677888666432 11223358999999998875321 135899999999999988543
No 57
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=45.98 E-value=2.9e+02 Score=26.85 Aligned_cols=144 Identities=11% Similarity=0.024 Sum_probs=77.7
Q ss_pred eeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceee-ccccccCCCceeEEEEEE-eeeee--ccCCceeeeeEEEE
Q 006377 285 AETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKC-TSWHRHYEFGYSRDLSFQ-HPIKV--YFGAKFGSCKETQK 360 (648)
Q Consensus 285 ~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~rg~tdi~~-tpW~~~~~g~~~R~isY~-~pl~~--p~GPK~t~c~etQk 360 (648)
+..++++++.++|..++.+.. .+ +..+.. .--...+++ ..+.|. ..... |+-|. .....+.
T Consensus 50 ~~~~v~~~~~~~~~~~~~~~~-----~W-----d~~~~~~~~le~~~~~---~~i~~~~~~~~~~~p~~~R--Dfv~~~~ 114 (206)
T PF01852_consen 50 AEGVVPASPEQVVEDLLDDRE-----QW-----DKMCVEAEVLEQIDED---TDIVYFVMKSPWPGPVSPR--DFVFLRS 114 (206)
T ss_dssp EEEEESSCHHHHHHHHHCGGG-----HH-----STTEEEEEEEEEEETT---EEEEEEEEE-CTTTTSSEE--EEEEEEE
T ss_pred EEEEEcCChHHHHHHHHhhHh-----hc-----ccchhhheeeeecCCC---CeEEEEEecccCCCCCCCc--EEEEEEE
Confidence 557889999999999887753 11 111111 101111111 223332 12221 22232 2222222
Q ss_pred EEEeeCC-eEEEEEeEeeCCCCC--CCceEEE---EEEEEEecCCCCCCceEEEEEEEEEEeeeccchhhhhcchHHHHH
Q 006377 361 FRVYRNS-HLVIETSQEVHDVPY--GDYFRVE---GLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECR 434 (648)
Q Consensus 361 i~~~~~~-~~VIetst~t~DVPY--GD~F~Ve---~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~k 434 (648)
.....++ ++++..+...+..|- ..+-+++ ..|+|++.++ +.|++.....+...+ .+-+..+..-+.+++-
T Consensus 115 ~~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~---~~~~vt~~~~~D~~G-~iP~~~~n~~~~~~~~ 190 (206)
T PF01852_consen 115 WRKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGD---GRTRVTYVSQVDPKG-WIPSWLVNMVVKSQPP 190 (206)
T ss_dssp EEECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETT---CEEEEEEEEEEESSS-SSHHHHHHHHHHHHHH
T ss_pred EEEeccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccC---CCceEEEEEEECCCC-CChHHHHHHHHHHhHH
Confidence 2222344 455666676777764 5666655 5699999864 369999999998754 3334555555556666
Q ss_pred HHHHHHHHHHHHH
Q 006377 435 DVYAMWIGMAHDV 447 (648)
Q Consensus 435 e~~~~wv~~~~e~ 447 (648)
+.++.+.+.++++
T Consensus 191 ~~~~~~~~~~~~~ 203 (206)
T PF01852_consen 191 NFLKNLRKALKKQ 203 (206)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 7777766666553
No 58
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=45.74 E-value=50 Score=30.58 Aligned_cols=46 Identities=22% Similarity=0.367 Sum_probs=40.5
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhc
Q 006377 602 SIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLHKR 647 (648)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (648)
-+..|..+|...+.++..++++++..|.++.--....+-||.|+.+
T Consensus 69 f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~lekL~ek 114 (141)
T TIGR02473 69 FIRQLDQRIQQQQQELALLQQEVEAKRERLLEARRELKALEKLKEK 114 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688999999999999999999999999988888888889988753
No 59
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=45.52 E-value=32 Score=41.39 Aligned_cols=33 Identities=18% Similarity=0.402 Sum_probs=30.6
Q ss_pred CccchHHHHHHhhchhhHHHHHHHHHHHHHHHH
Q 006377 599 SAESIPWLERRMHYLKDEMLMVEARLERMWHEH 631 (648)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (648)
...+++||++|+..|++|+.-||.+|+..|.++
T Consensus 265 a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 265 DSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456899999999999999999999999999976
No 60
>smart00683 DM16 Repeats in sea squirt COS41.4, worm R01H10.6, fly CG1126 etc.
Probab=44.28 E-value=37 Score=27.57 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=29.8
Q ss_pred eceEEEEecceEEEEeccCCceeEEEEecccccccc
Q 006377 96 LQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVR 131 (648)
Q Consensus 96 ~~GrLYIS~~~iCF~S~ifg~~tk~vIp~~dI~~I~ 131 (648)
.-|+|++|+-.+.-||..- ....+.|||-.|..++
T Consensus 19 ~~G~l~VTNlRiiW~s~~~-~~~NlSIgy~~i~~i~ 53 (55)
T smart00683 19 DLGVFFVTNLRLVWHSDTN-PRFNISVGYLQITNVR 53 (55)
T ss_pred CeeEEEEEeeEEEEEeCCC-CceEEEEcceeEEEEE
Confidence 3499999999999999864 3678999999998875
No 61
>PRK03100 sec-independent translocase; Provisional
Probab=44.28 E-value=43 Score=32.07 Aligned_cols=49 Identities=20% Similarity=0.304 Sum_probs=42.5
Q ss_pred CccchHHHHHHhhchhhHHHHHHHHHH-HHHHHHHHHHHHHHhHHHhhhc
Q 006377 599 SAESIPWLERRMHYLKDEMLMVEARLE-RMWHEHAVLRAQLKDIEQLHKR 647 (648)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 647 (648)
=++.+.||-+=+..+|+.+.-++.+++ .|.-|+.-||.+|+.|+.||..
T Consensus 26 LP~~~r~lG~~vr~~R~~~~~~~~~~~~elg~e~~dlrk~l~el~~lr~l 75 (136)
T PRK03100 26 LPGAIRWTARALRQARDYASGATSQLREELGPEFDDLRKPLGELQKLRGM 75 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 357889999999999999999998886 5778999999999999988753
No 62
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=43.94 E-value=37 Score=29.53 Aligned_cols=43 Identities=28% Similarity=0.295 Sum_probs=24.8
Q ss_pred CCCCccchHHHHHHhhchh-h--------HHHHHHHHHHHHHHHHHHHHHHH
Q 006377 596 GQRSAESIPWLERRMHYLK-D--------EMLMVEARLERMWHEHAVLRAQL 638 (648)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~ 638 (648)
.-|+.+.|+||+.=.++.+ - ++.....+||.++.|.+-|+.+|
T Consensus 37 R~y~~~dv~~l~~i~~L~~d~g~~l~~i~~~l~l~~~~~~l~~~l~~l~~~~ 88 (91)
T cd04766 37 RRYSERDIERLRRIQRLTQELGVNLAGVKRILELEEELAELRAELDELRARL 88 (91)
T ss_pred eeECHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3589999999976444444 1 23334445555555555555444
No 63
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=43.37 E-value=2.2e+02 Score=25.46 Aligned_cols=62 Identities=16% Similarity=0.189 Sum_probs=39.8
Q ss_pred eeceEEEEecceEEEEeccCC-c---eeEEEEeccccccccccccccccCCeEEEEecCeEEEEecc
Q 006377 95 LLQGHMYLFVHFICFYSNIFG-F---ETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASF 157 (648)
Q Consensus 95 ~~~GrLYIS~~~iCF~S~ifg-~---~tk~vIp~~dI~~I~K~kt~~i~pnaI~I~T~~~k~~F~SF 157 (648)
+-.=++|++++.+..++...+ . ...-.||+.++. |+......-.||+++|.+..+.|.+..-
T Consensus 16 ~~~R~~FLFnD~LlY~~~~~~~~~~y~~~~~i~L~~~~-V~~~~~~~~~~~~F~I~~~~ks~~l~A~ 81 (99)
T cd01220 16 LQQRMFFLFSDLLLYTSKSPTDQNSFRILGHLPLRGML-TEESEHEWGVPHCFTIFGGQCAITVAAS 81 (99)
T ss_pred CceEEEEEccceEEEEEeecCCCceEEEEEEEEcCceE-EeeccCCcCCceeEEEEcCCeEEEEECC
Confidence 334467888887655544332 1 345689999885 5554332235899999988888777443
No 64
>PRK11519 tyrosine kinase; Provisional
Probab=42.91 E-value=24 Score=42.42 Aligned_cols=34 Identities=12% Similarity=0.381 Sum_probs=31.2
Q ss_pred CccchHHHHHHhhchhhHHHHHHHHHHHHHHHHH
Q 006377 599 SAESIPWLERRMHYLKDEMLMVEARLERMWHEHA 632 (648)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (648)
...+++||++|+.-|+.++..+|.+|+..|.++.
T Consensus 265 a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~ 298 (719)
T PRK11519 265 ASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKD 298 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4578999999999999999999999999999774
No 65
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=39.81 E-value=53 Score=30.37 Aligned_cols=42 Identities=19% Similarity=0.417 Sum_probs=33.0
Q ss_pred CccchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006377 599 SAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKD 640 (648)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (648)
..||+.-+++|+..|++.+...+..+.+++.++..+-..|..
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~ 126 (129)
T cd00584 85 LEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQE 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356999999999999888888777777777777777665544
No 66
>cd04789 HTH_Cfa Helix-Turn-Helix DNA binding domain of the Cfa transcription regulator. Putative helix-turn-helix (HTH) MerR-like transcription regulator; the N-terminal domain of Cfa, a cyclopropane fatty acid synthase and other related methyltransferases. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=39.29 E-value=73 Score=28.49 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=31.5
Q ss_pred CCCCCCccchHHHHHHhhchhh------HHH----------HHHHHHHHHHHHHHHHHHHHHhHHHh
Q 006377 594 GLGQRSAESIPWLERRMHYLKD------EML----------MVEARLERMWHEHAVLRAQLKDIEQL 644 (648)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (648)
|---|+.+.|+||. .|..|++ |+. +.+.|++.+.++.+-|......|+++
T Consensus 35 g~R~Y~~~~l~~l~-~I~~l~~~G~~l~ei~~~l~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~ 100 (102)
T cd04789 35 GYRLYPDSDLQRLL-LIQQLQAGGLSLKECLACLQGKLTRSLLLERLSSLAEQIARKQQARDLLAAL 100 (102)
T ss_pred CCeeCCHHHHHHHH-HHHHHHHCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33469999999998 6666766 442 34455555555555555555555554
No 67
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=38.85 E-value=4e+02 Score=27.51 Aligned_cols=78 Identities=15% Similarity=0.125 Sum_probs=46.9
Q ss_pred EEEEEeEeeCCCCCC-CceEEEEE---------------EEEEecCCCCCCceEEEEEEEEEEeeeccchhhhhcchHHH
Q 006377 369 LVIETSQEVHDVPYG-DYFRVEGL---------------WDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEE 432 (648)
Q Consensus 369 ~VIetst~t~DVPYG-D~F~Ve~R---------------~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g 432 (648)
.++..+..-+++|=. ++.++... |.+++. +++|++...+.+..-+ .+=+..|..-+..+
T Consensus 138 vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~~----~~~~~ity~~~~dPgG-~iP~wvvn~~~k~~ 212 (235)
T cd08872 138 IVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEITRD----NILCKITYVANVNPGG-WAPASVLRAVYKRE 212 (235)
T ss_pred EEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCCcccccCC----CCeEEEEEEEEeCCCC-CccHHHHHHHHHhh
Confidence 345556666667644 77777642 444441 3479999888888733 44456666666666
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 006377 433 CRDVYAMWIGMAHDVLKQK 451 (648)
Q Consensus 433 ~ke~~~~wv~~~~e~l~~~ 451 (648)
.-...+.+-+.+.+..+.+
T Consensus 213 ~P~~l~~~~~~~~~~~~~~ 231 (235)
T cd08872 213 YPKFLKRFTSYVQEKTKGK 231 (235)
T ss_pred chHHHHHHHHHHHHhcCCC
Confidence 6666666555555554433
No 68
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=38.79 E-value=62 Score=29.03 Aligned_cols=44 Identities=14% Similarity=0.201 Sum_probs=40.6
Q ss_pred CccchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006377 599 SAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 642 (648)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (648)
-.|+++=|++|+..|..++.-.+..++.+..++.-||.+|..+.
T Consensus 61 ~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 61 KEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35789999999999999999999999999999999999998764
No 69
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=38.45 E-value=58 Score=28.10 Aligned_cols=64 Identities=13% Similarity=0.315 Sum_probs=40.9
Q ss_pred EEEEeecceeceEEEEecce--EEEEeccCCceeEEEEeccccccccccccccccCC-eEEEEecC------eEEEEe
Q 006377 87 NCAFQESILLQGHMYLFVHF--ICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPN-AIEIFAAG------KKYFFA 155 (648)
Q Consensus 87 ~CaL~r~i~~~GrLYIS~~~--iCF~S~ifg~~tk~vIp~~dI~~I~K~kt~~i~pn-aI~I~T~~------~k~~F~ 155 (648)
.|.+.+. .|.|||++.+ +-.-.+--+-...+.|||.+|+..+-.+... |. -++|+..+ ..|.|+
T Consensus 6 ~~~yKK~---~G~L~l~~d~~~~~W~~~~~~~~~~v~i~~~~I~~lq~Sp~~s--~Kv~Lki~~~~~~~~~~~~f~F~ 78 (79)
T PF08567_consen 6 AASYKKK---DGTLTLTEDRKPLEWTPKASDGPSTVSIPLNDIKNLQQSPEGS--PKVMLKIVLKDDSSEESKTFVFT 78 (79)
T ss_dssp EEEETTE---EEEEEEETTCSSEEEEECCSSSSSEEEEETTTEEEEEE--TTS--STEEEEEEETTSC---CCCEEE-
T ss_pred eEEEEcC---CcEEEEecCCceEEEeecCCCCCceEEEEHHHhhhhccCCCCC--cceEEEEEEecCCcccceEEEEe
Confidence 4555543 4999999999 8887653333347999999999987754421 11 46666432 457774
No 70
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=38.07 E-value=4.3e+02 Score=26.55 Aligned_cols=144 Identities=7% Similarity=0.020 Sum_probs=72.3
Q ss_pred eeeEEe-cCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCCCceeEEEEEEeeeeeccCCceeeeeEEEEEEE
Q 006377 285 AETNFQ-MKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRV 363 (648)
Q Consensus 285 ~e~~fp-isv~~~F~lLFgD~s~~F~~~f~~~rg~tdi~~tpW~~~~~g~~~R~isY~~pl~~p~GPK~t~c~etQki~~ 363 (648)
...+|+ ++++.|++++...+ +..++...+... +.. ... ..+.+-|......|+.+..-.+ .+....
T Consensus 53 ~~~~~~~~s~~~~~~~l~D~~---~r~~Wd~~~~~~-~~~-----~~~--~~~i~y~~~k~PwPvs~RD~V~--~r~~~~ 119 (207)
T cd08910 53 VFGVLEDCSPSLLADVYMDLE---YRKQWDQYVKEL-YEK-----ECD--GETVIYWEVKYPFPLSNRDYVY--IRQRRD 119 (207)
T ss_pred EEEEEcCCCHHHHHHHHhCHH---HHHHHHHHHHhh-eee-----cCC--CCEEEEEEEEcCCCCCCceEEE--EEEecc
Confidence 357887 89999999875533 333333332210 111 111 1333333333333344443221 122222
Q ss_pred ee-CC--eEE-EEEeEeeCCCCCCC-ceE---EEEEEEEEecCCCCCCceEEEEEEEEEEeeeccchhhhhcchHHHHHH
Q 006377 364 YR-NS--HLV-IETSQEVHDVPYGD-YFR---VEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRD 435 (648)
Q Consensus 364 ~~-~~--~~V-Ietst~t~DVPYGD-~F~---Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke 435 (648)
.+ +. -++ +......+++|-.+ +-+ ....|+|++.+ +++|++..++...- |..+=+..+..-+.++...
T Consensus 120 ~~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~---~~~t~i~~~~~~DP-gG~IP~wlvN~~~~~~~~~ 195 (207)
T cd08910 120 LDVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDG---KKGSKVFMYYFDNP-GGMIPSWLINWAAKNGVPN 195 (207)
T ss_pred ccCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCC---CCceEEEEEEEeCC-CCcchHHHHHHHHHHhhHH
Confidence 21 22 233 33344556777554 333 56779998764 34799998888876 3333344555555556656
Q ss_pred HHHHHHHHHH
Q 006377 436 VYAMWIGMAH 445 (648)
Q Consensus 436 ~~~~wv~~~~ 445 (648)
.++.+-+.++
T Consensus 196 ~l~~l~ka~~ 205 (207)
T cd08910 196 FLKDMQKACQ 205 (207)
T ss_pred HHHHHHHHHh
Confidence 6655555443
No 71
>PHA03231 glycoprotein BALF4; Provisional
Probab=37.82 E-value=19 Score=43.77 Aligned_cols=53 Identities=23% Similarity=0.286 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhhhccccccCCceeehhhHHHHHHHHhheeeeeecC------CCceeecCCCc
Q 006377 528 AIASLLRESMTKCCSFVKRQSGVSLILVIAFAVIFLMQVSILVLLNR------PQHVHMASPPD 585 (648)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 585 (648)
+.+.++.-.+.-+.+||++-=++.+++++++++|+ +++||.| ..-++|..|..
T Consensus 684 ~v~ga~~SiVsG~~sFl~NPFGg~~iillvia~vv-----~v~l~~rr~~~~~~~P~k~lyP~~ 742 (829)
T PHA03231 684 GVAGAVGSIVSGVISFLKNPFGGLAIGLLVIAVLV-----AVFLAYRRVRRLRQNPMKMLYPYT 742 (829)
T ss_pred hHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh-----hhhHHHHHHHHHHhCcHhhCCCCc
Confidence 44555777888899999987777666666555443 2334444 33466666654
No 72
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=37.28 E-value=1.4e+02 Score=24.13 Aligned_cols=64 Identities=23% Similarity=0.347 Sum_probs=41.7
Q ss_pred EEEEecceEEEEeccCC---ceeEEEEecccccccccccccc--ccCCeEEEEecCe-EEEEeccCCHHHHH
Q 006377 99 HMYLFVHFICFYSNIFG---FETKKIIPFYEVTAVRRAKTAG--IFPNAIEIFAAGK-KYFFASFLSRDEAF 164 (648)
Q Consensus 99 rLYIS~~~iCF~S~ifg---~~tk~vIp~~dI~~I~K~kt~~--i~pnaI~I~T~~~-k~~F~SF~~RD~a~ 164 (648)
.+.+.++.|++|..--+ ......|++.++ .|....... -.++++.|.+.+. .|.|..- +.++.-
T Consensus 22 ~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~f~l~~~~~~~~~f~~~-s~~~~~ 91 (102)
T smart00233 22 YFVLFNSTLLYYKSEKAKKDYKPKGSIDLSGI-TVREAPDPDSAKKPHCFEIKTADRRSYLLQAE-SEEERE 91 (102)
T ss_pred EEEEECCEEEEEeCCCccccCCCceEEECCcC-EEEeCCCCccCCCceEEEEEecCCceEEEEcC-CHHHHH
Confidence 35567788888876433 345678999998 655543321 3467999998876 8888654 444433
No 73
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=36.13 E-value=60 Score=29.86 Aligned_cols=40 Identities=18% Similarity=0.323 Sum_probs=28.4
Q ss_pred CccchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006377 599 SAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQL 638 (648)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (648)
-.||++-|++|+..|.+.+.-.+..++.++.++..+...|
T Consensus 84 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l 123 (126)
T TIGR00293 84 AEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEA 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999988887776666666666666666655554
No 74
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=35.96 E-value=3.2e+02 Score=28.01 Aligned_cols=51 Identities=6% Similarity=0.012 Sum_probs=39.3
Q ss_pred CCeEEEEEeEeeCCCCCCC---ceEEEEEEEEEecCCCCCCceEEEEEEEEEEeeec
Q 006377 366 NSHLVIETSQEVHDVPYGD---YFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKT 419 (648)
Q Consensus 366 ~~~~VIetst~t~DVPYGD---~F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT 419 (648)
+.++++..+..-+++|.-. .-...++|.|++.++ ++|+|.-.+++.+.+++
T Consensus 126 g~~iI~~~SV~H~~~pp~~gVRa~~l~sgYlIep~g~---g~s~ltyi~rvD~rG~~ 179 (205)
T cd08907 126 GGCLLVSQSVDHDNPQLEAGVRAVLLTSQYLIEPCGM---GRSRLTHICRADLRGRS 179 (205)
T ss_pred CCEEEEEecccCCcCCCCCCeEEEEEeccEEEEECCC---CCeEEEEEEEeCCCCCC
Confidence 3567778777777777543 456678999999863 48999999999998766
No 75
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=35.82 E-value=74 Score=31.39 Aligned_cols=39 Identities=23% Similarity=0.389 Sum_probs=23.6
Q ss_pred HHHHhhchhhHHHHHH--------HHHHHHHHHHHHHHHHHHh-HHHh
Q 006377 606 LERRMHYLKDEMLMVE--------ARLERMWHEHAVLRAQLKD-IEQL 644 (648)
Q Consensus 606 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~~ 644 (648)
+...+..||-||+..+ +..++|++|+.-|+..|++ +++|
T Consensus 56 ~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l 103 (177)
T PF07798_consen 56 FKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEINKL 103 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888887654 4555666666666666553 4433
No 76
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=35.58 E-value=87 Score=25.48 Aligned_cols=32 Identities=25% Similarity=0.356 Sum_probs=14.8
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 006377 606 LERRMHYLKDEMLMVEARLERMWHEHAVLRAQ 637 (648)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (648)
||.+++.|..|-......++.|+.|..-|+.+
T Consensus 31 Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 31 LEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444444444444444444444444444443
No 77
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=35.22 E-value=4.6e+02 Score=26.02 Aligned_cols=81 Identities=11% Similarity=0.157 Sum_probs=47.6
Q ss_pred EEEEEeeCCeEEEE-EeEeeCCCCC-CCceEEE---EEEEEEecCCCCCCceEEEEEEEEEEeeeccchhhhhcchHHHH
Q 006377 359 QKFRVYRNSHLVIE-TSQEVHDVPY-GDYFRVE---GLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEEC 433 (648)
Q Consensus 359 Qki~~~~~~~~VIe-tst~t~DVPY-GD~F~Ve---~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ 433 (648)
+....+++..|++. .+..-+..|- -++-+.+ +.|.+++...+. ++|++..++.+... ..+=+..|.+.+.+.+
T Consensus 117 ~~~~~~~~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~-~~t~~~~~~~~Dpk-G~iP~~lvn~~~~~~~ 194 (206)
T cd08867 117 VYVKRYEDNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSP-DKSFLVLYVQTDLR-GMIPQSLVESAMPSNL 194 (206)
T ss_pred EEEEEeCCCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCC-CceEEEEEEEeccC-CCCcHHHHHhhhhhhH
Confidence 43344544445443 3443355554 3544444 568898765432 48999999999884 4555666766666666
Q ss_pred HHHHHHHH
Q 006377 434 RDVYAMWI 441 (648)
Q Consensus 434 ke~~~~wv 441 (648)
-+.+..+.
T Consensus 195 ~~~~~~lr 202 (206)
T cd08867 195 VNFYTDLV 202 (206)
T ss_pred HHHHHHHH
Confidence 55555543
No 78
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=35.10 E-value=1.3e+02 Score=33.05 Aligned_cols=100 Identities=12% Similarity=0.133 Sum_probs=68.5
Q ss_pred CCCCCCeeeeEEEEEEe--ecceeceEEEEecceEEEEeccCCceeEEEEecccccccccccccc-c--cCCeEEEEec-
Q 006377 75 RLPSEEVLVQDFNCAFQ--ESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAG-I--FPNAIEIFAA- 148 (648)
Q Consensus 75 ~LP~~E~LI~~f~CaL~--r~i~~~GrLYIS~~~iCF~S~ifg~~tk~vIp~~dI~~I~K~kt~~-i--~pnaI~I~T~- 148 (648)
.|-++|.+++.+.-.=- ..---.|+|+||+=.|.-+|.--- ...+.|=|.-|..|+-..... + ...|+-|.++
T Consensus 18 ~lr~GE~~i~~~~~VEDtKGN~G~~G~l~vTNLR~iW~s~~~~-r~NlSIG~~~i~~i~~~~~~sklrg~teaL~i~~k~ 96 (339)
T PF07289_consen 18 KLRPGEFIIDRLDPVEDTKGNNGDRGRLVVTNLRLIWHSLKRP-RINLSIGYNCITNISTKTVNSKLRGNTEALYILAKF 96 (339)
T ss_pred ccccceEEEEeeeceeeccCCCCCeeEEEEEeeeeEEeccCCC-ceeEEeeceeEEEEEEEEeeccccCceeEEEEeeec
Confidence 34578888887765532 122346999999999999987432 466778888888776543221 1 2348888875
Q ss_pred ---CeEEEEeccCC---HHHHHHHHHHHHHhcC
Q 006377 149 ---GKKYFFASFLS---RDEAFKLITDGWLQHG 175 (648)
Q Consensus 149 ---~~k~~F~SF~~---RD~a~~lI~~~w~~~~ 175 (648)
..+|+|+.... +...|..|..+|+.+.
T Consensus 97 ~~~rfEFiFt~~~~~~~~~~lf~~v~~v~raY~ 129 (339)
T PF07289_consen 97 NNTRFEFIFTNLSPNSPRQRLFTSVQAVYRAYE 129 (339)
T ss_pred CCceEEEEeccCCCCCccchHHHHHHHHHHHHH
Confidence 25688887653 2257999999999764
No 79
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=34.90 E-value=4.8e+02 Score=26.10 Aligned_cols=149 Identities=11% Similarity=0.035 Sum_probs=76.2
Q ss_pred eeeeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCCCceeEEEEEE-eeeeeccCCceeeeeEEEEE
Q 006377 283 KVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQ-HPIKVYFGAKFGSCKETQKF 361 (648)
Q Consensus 283 ~v~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~rg~tdi~~tpW~~~~~g~~~R~isY~-~pl~~p~GPK~t~c~etQki 361 (648)
.-++.++++|+..+..++..-+ ....+...+..... +... +....+.|. .-...|++....-+ ..+.+
T Consensus 48 ~k~e~~i~~~~~~~~~vl~d~~---~~~~W~p~~~~~~~-l~~~------~~~~~v~y~~~~~PwPv~~RD~v~-~~~~~ 116 (215)
T cd08877 48 LRMEGEIDGPLFNLLALLNEVE---LYKTWVPFCIRSKK-VKQL------GRADKVCYLRVDLPWPLSNREAVF-RGFGV 116 (215)
T ss_pred EEEEEEecCChhHeEEEEehhh---hHhhhcccceeeEE-Eeec------CCceEEEEEEEeCceEecceEEEE-EEEEE
Confidence 3467889999999988875432 33333222211111 1111 112234443 22223344443322 23433
Q ss_pred EEe-eCCeEEEEEeEeeC--C--------CCCCC-c----eEEEEEEEEEecCCCCCCceEEEEEEEEEEeeeccchhhh
Q 006377 362 RVY-RNSHLVIETSQEVH--D--------VPYGD-Y----FRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKI 425 (648)
Q Consensus 362 ~~~-~~~~~VIetst~t~--D--------VPYGD-~----F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~I 425 (648)
... .++.++|....... + +|-.+ . -.....|.|++.++ ++|++..++.+.-..+-+=+..|
T Consensus 117 ~~~~~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~---~~t~v~~~~~~DP~g~~IP~~li 193 (215)
T cd08877 117 DRLEENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISP---TKCYLRFVANVDPKMSLVPKSLL 193 (215)
T ss_pred eeeccCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCC---CCeEEEEEEEcCCCcccCCHHHH
Confidence 333 44556554443221 1 56444 2 34567799999864 38999999988865441224555
Q ss_pred hcchHHHHHHHHHHHHHHHH
Q 006377 426 VQSTLEECRDVYAMWIGMAH 445 (648)
Q Consensus 426 Ekst~~g~ke~~~~wv~~~~ 445 (648)
..-+.+-....+..+.++++
T Consensus 194 N~~~k~~~~~~~~~l~k~~~ 213 (215)
T cd08877 194 NFVARKFAGLLFEKIQKAAK 213 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 55555555666666555554
No 80
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=34.62 E-value=48 Score=28.65 Aligned_cols=29 Identities=24% Similarity=0.325 Sum_probs=23.5
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHH
Q 006377 606 LERRMHYLKDEMLMVEARLERMWHEHAVL 634 (648)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (648)
|.+--..||+|.++.||.|+.+++||--.
T Consensus 5 i~eEn~~Lk~eiqkle~ELq~~~~~~qIk 33 (76)
T PF07334_consen 5 IQEENARLKEEIQKLEAELQQNKREFQIK 33 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 44555679999999999999999997543
No 81
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=34.27 E-value=91 Score=24.62 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006377 614 KDEMLMVEARLERMWHEHAVLRAQLKDIEQ 643 (648)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (648)
|.++...|..++.|..|...|+.++..|++
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566777788888888999999888888764
No 82
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=33.80 E-value=46 Score=33.94 Aligned_cols=27 Identities=22% Similarity=0.460 Sum_probs=14.6
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHH
Q 006377 602 SIPWLERRMHYLKDEMLMVEARLERMW 628 (648)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (648)
+|-=.|+.+..||+++...|++|+.|-
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~Li 67 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEELI 67 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555543
No 83
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=33.71 E-value=81 Score=33.54 Aligned_cols=39 Identities=13% Similarity=0.275 Sum_probs=27.0
Q ss_pred chHHHHHHhhchhhH------HHHHHHHHHHHHHHHHHHHHHHHh
Q 006377 602 SIPWLERRMHYLKDE------MLMVEARLERMWHEHAVLRAQLKD 640 (648)
Q Consensus 602 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 640 (648)
-+.||..|+-.+.+- ..|+|...+.+++.....+..|+.
T Consensus 167 kV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~ 211 (269)
T PF05278_consen 167 KVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEE 211 (269)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999887766 456666666666666666655543
No 84
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=33.64 E-value=85 Score=25.55 Aligned_cols=35 Identities=20% Similarity=0.411 Sum_probs=24.2
Q ss_pred HhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006377 609 RMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQ 643 (648)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (648)
|+.-|-.||-..+.-+..+|.|..-||..++.+++
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~e 35 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEE 35 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666777777777777777777777765
No 85
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=33.12 E-value=1.1e+02 Score=26.08 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=22.9
Q ss_pred chHHHHHHhhchhhH-------HHHHHHHHHHHHHHHHHHHHHHHh
Q 006377 602 SIPWLERRMHYLKDE-------MLMVEARLERMWHEHAVLRAQLKD 640 (648)
Q Consensus 602 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 640 (648)
.|+=|+.++..||++ -...+...+++++|+...+.+|..
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~ 64 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRS 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666665 445555566666666666655543
No 86
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=32.92 E-value=1.4e+02 Score=34.75 Aligned_cols=81 Identities=19% Similarity=0.257 Sum_probs=61.6
Q ss_pred EEEe-ecceeceEEEEecceEEEEeccCCceeEEEEeccccccccccccccccCCeEEEEecC-eEEEEeccCCHHHHHH
Q 006377 88 CAFQ-ESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAG-KKYFFASFLSRDEAFK 165 (648)
Q Consensus 88 CaL~-r~i~~~GrLYIS~~~iCF~S~ifg~~tk~vIp~~dI~~I~K~kt~~i~pnaI~I~T~~-~k~~F~SF~~RD~a~~ 165 (648)
|.|. +.....|+|=|++.-|.|...-=| .-+.||-.||..++=.+.. .-.+|.|.|++ .-|-|..| ||+-+.
T Consensus 10 iyl~~~G~~~~G~lkit~~gi~~K~~~gg--k~~~v~~sei~~~~w~k~~--r~~~LrV~tk~g~~~~~~GF--~d~d~~ 83 (615)
T KOG0526|consen 10 IYLEVSGHLKPGTLKITESGIGFKNSKGG--KVVTVPASEIDKVKWQKGV--RGYGLRVFTKDGGVYRFDGF--RDDDLE 83 (615)
T ss_pred eEEecccccccceEEEccCceeEeeCCCC--ceEEeehHHhhhhhhhhhc--cccceEEEccCCceEEecCc--CHHHHH
Confidence 5554 344778999999999999854333 4567899999998876643 45699999985 78999999 777777
Q ss_pred HHHHHHHhc
Q 006377 166 LITDGWLQH 174 (648)
Q Consensus 166 lI~~~w~~~ 174 (648)
.|.++.+..
T Consensus 84 ~L~~ff~~~ 92 (615)
T KOG0526|consen 84 KLKSFFSSN 92 (615)
T ss_pred HHHHHHHHh
Confidence 777776653
No 87
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=32.76 E-value=67 Score=33.81 Aligned_cols=38 Identities=5% Similarity=0.101 Sum_probs=29.1
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006377 603 IPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKD 640 (648)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (648)
+.=|+.+|..|+.|+.....++|+++||+..|+.+-++
T Consensus 56 ~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~ 93 (263)
T PRK10803 56 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 93 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 44567888888888888888888888888887765544
No 88
>PF04484 DUF566: Family of unknown function (DUF566) ; InterPro: IPR007573 This is a family of related proteins that is plant specific.
Probab=32.43 E-value=84 Score=34.08 Aligned_cols=42 Identities=24% Similarity=0.318 Sum_probs=36.0
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHH---HHHHHHHhHHHh
Q 006377 603 IPWLERRMHYLKDEMLMVEARLERMWHEHA---VLRAQLKDIEQL 644 (648)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 644 (648)
|-++-.||.-|++-+.|--..||++|||+. .|+.|+..||.-
T Consensus 182 L~~~w~~is~Lr~sV~~KRi~lq~~kq~~KL~~IL~~Q~~~Le~W 226 (311)
T PF04484_consen 182 LYNAWLRISELRDSVAMKRIELQRLKQELKLNSILKSQMPYLEEW 226 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 335567999999999999999999999975 589999999863
No 89
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=32.41 E-value=64 Score=35.18 Aligned_cols=33 Identities=12% Similarity=0.201 Sum_probs=30.0
Q ss_pred CccchHHHHHHhhchhhHHHHHHHHHHHHHHHH
Q 006377 599 SAESIPWLERRMHYLKDEMLMVEARLERMWHEH 631 (648)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (648)
..++++|+++++..+++++..||.+|+..|.++
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~ 200 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQIKN 200 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 368999999999999999999999999988865
No 90
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=32.27 E-value=1.4e+02 Score=26.32 Aligned_cols=65 Identities=17% Similarity=0.278 Sum_probs=38.0
Q ss_pred EEecceEEEEeccCCceeEEEEeccccccccccc-ccc--ccCCeEEEEecCeEEEEeccCCHHHHHHHH
Q 006377 101 YLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAK-TAG--IFPNAIEIFAAGKKYFFASFLSRDEAFKLI 167 (648)
Q Consensus 101 YIS~~~iCF~S~ifg~~tk~vIp~~dI~~I~K~k-t~~--i~pnaI~I~T~~~k~~F~SF~~RD~a~~lI 167 (648)
.+..++|++|.+--....+-.|++.++. |.... ... -.||.+.|.|.+..|+|.. .+-++...=|
T Consensus 24 vL~~~~L~yyk~~~~~~~~~~I~L~~~~-v~~~~~~~~~~~~~~~F~I~t~~rt~~~~A-~s~~e~~~Wi 91 (100)
T cd01233 24 VVRRPYLHIYRSDKDPVERGVINLSTAR-VEHSEDQAAMVKGPNTFAVCTKHRGYLFQA-LSDKEMIDWL 91 (100)
T ss_pred EEECCEEEEEccCCCccEeeEEEecccE-EEEccchhhhcCCCcEEEEECCCCEEEEEc-CCHHHHHHHH
Confidence 4456667766553334456788888763 22211 111 1478999999988888853 3444444333
No 91
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=31.64 E-value=95 Score=30.52 Aligned_cols=31 Identities=19% Similarity=0.419 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 006377 616 EMLMVEARLERMWHEHAVLRAQLKDIEQLHK 646 (648)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (648)
++..-+..++++++++.+|..++++++.++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 189 (191)
T PF04156_consen 159 EVQELRSQLERLQENLQQLEEKIQELQELLE 189 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444455555555555555555544
No 92
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=31.14 E-value=86 Score=28.52 Aligned_cols=36 Identities=11% Similarity=0.160 Sum_probs=32.4
Q ss_pred HHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006377 608 RRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQ 643 (648)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (648)
.+.+.|+.|..-+++++++++++-+.|+.++++|..
T Consensus 27 ~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 27 LDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 467899999999999999999999999999998853
No 93
>PF03703 bPH_2: Bacterial PH domain; InterPro: IPR005182 A domain that is found in uncharacterised family of membrane proteins. 1-3 copies found in each protein, with each copy flanked by transmembrane helices.
Probab=30.91 E-value=1.7e+02 Score=23.90 Aligned_cols=67 Identities=21% Similarity=0.230 Sum_probs=46.5
Q ss_pred EEEecceEEEEeccCCceeEEEEecccccccccccccc---ccCCeEEEEecCeE--EEEeccCCHHHHHHHH
Q 006377 100 MYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAG---IFPNAIEIFAAGKK--YFFASFLSRDEAFKLI 167 (648)
Q Consensus 100 LYIS~~~iCF~S~ifg~~tk~vIp~~dI~~I~K~kt~~---i~pnaI~I~T~~~k--~~F~SF~~RD~a~~lI 167 (648)
.+|+++.|...+.+|+ .+...||+..|.+|+-..+.. +--..|.|.+.+.. ..-..+.+.++|..+.
T Consensus 6 y~i~~~~l~i~~G~~~-~~~~~i~~~~Iq~v~~~q~~~~r~~g~~~i~i~~~~~~~~~~~i~~~~~~~a~~i~ 77 (80)
T PF03703_consen 6 YTITDDRLIIRSGLFS-KRTTIIPLDRIQSVSIKQNPLQRLFGLGTIKIDTAGGSGEKIEIPFLSIEDAEEIY 77 (80)
T ss_pred EEEECCEEEEEECeEE-EEEEEEEhhHeEEEEEEcCHHHHhCccEEEEEEECCCCCceeEEecCCHHHHHHHH
Confidence 6789999999998877 556789999999999865431 12257788776422 2444566777766554
No 94
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=30.66 E-value=1e+02 Score=30.84 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=33.2
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006377 603 IPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQ 643 (648)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (648)
++=|+.|+..|.+|+.--+.-+|.++.||..|..|+.-+|.
T Consensus 125 ~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~ 165 (194)
T PF08614_consen 125 LAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEE 165 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888889999999999998887763
No 95
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=30.41 E-value=46 Score=37.09 Aligned_cols=35 Identities=11% Similarity=0.422 Sum_probs=31.3
Q ss_pred CccchHHHHHHhhchhhHHHHHHHHHHHHHHHHHH
Q 006377 599 SAESIPWLERRMHYLKDEMLMVEARLERMWHEHAV 633 (648)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (648)
...+++||++|+..+++++.-+|.+|+..|.++..
T Consensus 169 ~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i 203 (444)
T TIGR03017 169 AQKAALWFVQQIAALREDLARAQSKLSAYQQEKGI 203 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44579999999999999999999999999997743
No 96
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=30.38 E-value=1e+02 Score=25.52 Aligned_cols=35 Identities=17% Similarity=0.328 Sum_probs=26.7
Q ss_pred HHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 006377 607 ERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDI 641 (648)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (648)
-.++..++.|+...+.+++.++.|..-|+.+++.|
T Consensus 16 ~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 16 YSRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566677788888888888888888888877776
No 97
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=30.37 E-value=87 Score=26.99 Aligned_cols=30 Identities=27% Similarity=0.336 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006377 614 KDEMLMVEARLERMWHEHAVLRAQLKDIEQ 643 (648)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (648)
|||.....+.|.+.|.....|-++|..||.
T Consensus 49 REEFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 49 REEFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999984
No 98
>PF03317 ELF: ELF protein; InterPro: IPR004990 This is a family of hypothetical proteins from cereal crops.
Probab=30.30 E-value=65 Score=32.70 Aligned_cols=43 Identities=28% Similarity=0.250 Sum_probs=34.8
Q ss_pred cchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006377 601 ESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQ 643 (648)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (648)
.+-.|+|---+-+=||+.-+.|+|||--|||+.+-=+++|+.|
T Consensus 239 s~Rr~~Eveqrirw~~I~rs~a~ler~e~~h~l~lf~~ed~rr 281 (284)
T PF03317_consen 239 SARRCLEVEQRIRWEEIPRSKASLERAEHEHALDLFKSEDLRR 281 (284)
T ss_pred hhhHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHHHHhhhhhhc
Confidence 3456776555556799999999999999999999888888754
No 99
>COG3461 Uncharacterized conserved protein [Function unknown]
Probab=30.01 E-value=56 Score=29.14 Aligned_cols=43 Identities=28% Similarity=0.275 Sum_probs=27.9
Q ss_pred ccchHHHHHHhhchhhHHHH---HHHHHHHHHH---HHHHHHHHHHhHH
Q 006377 600 AESIPWLERRMHYLKDEMLM---VEARLERMWH---EHAVLRAQLKDIE 642 (648)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~ 642 (648)
.|||.|-++|+..-|||-.- --+|=|.|-| -+.||+.|...++
T Consensus 30 iEA~~wY~qR~~~tKD~~~r~ImehnrdeE~eHa~mlLEwlrR~~p~wd 78 (103)
T COG3461 30 IEAMMWYDQRADATKDEDLRAIMEHNRDEEKEHAAMLLEWLRRHDPAWD 78 (103)
T ss_pred HHHHHHHHHHhhccccHhHHHHHHHcccHHHHHHHHHHHHHHHcCchHH
Confidence 48999999999999998532 2223233322 2457777766654
No 100
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=29.86 E-value=2.3e+02 Score=31.15 Aligned_cols=98 Identities=17% Similarity=0.243 Sum_probs=72.8
Q ss_pred CCCCCCeeeeEEEEEEe--ecceeceEEEEecceEEEEeccCCceeEEEEeccccccccccccccccCCeEEEEec--Ce
Q 006377 75 RLPSEEVLVQDFNCAFQ--ESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAA--GK 150 (648)
Q Consensus 75 ~LP~~E~LI~~f~CaL~--r~i~~~GrLYIS~~~iCF~S~ifg~~tk~vIp~~dI~~I~K~kt~~i~pnaI~I~T~--~~ 150 (648)
.|-+.|.++..+.-.+. .+.---|.++||+-.+--|+++ .-.-.+.||+-+|.+|....+. |--|+.|.|. ..
T Consensus 150 ~lLp~E~v~~~~~gVwnls~dqGnLGtfivTNvRiVW~A~~-ne~fNVSiPylqi~~i~ir~SK--fG~aLVieT~~~sG 226 (339)
T PF07289_consen 150 KLLPQEQVYSRVNGVWNLSSDQGNLGTFIVTNVRIVWFADM-NESFNVSIPYLQIKSIRIRDSK--FGPALVIETSESSG 226 (339)
T ss_pred eeCCccEEeeccCCEEEcccCCCceeEEEEeeeEEEEEccC-CccccccchHhhheeeeeeccc--cceEEEEEEeccCC
Confidence 44567888887776665 3333349999999999999875 3356789999999999988663 4459999875 46
Q ss_pred EEEEeccC-C----HHHHHHHHHHHHHhcCC
Q 006377 151 KYFFASFL-S----RDEAFKLITDGWLQHGS 176 (648)
Q Consensus 151 k~~F~SF~-~----RD~a~~lI~~~w~~~~~ 176 (648)
.|+. +|. + =++.|+-|..+|+....
T Consensus 227 gYVL-GFRvDP~ErL~~l~KEi~sLh~vy~~ 256 (339)
T PF07289_consen 227 GYVL-GFRVDPEERLQELFKEIQSLHKVYSA 256 (339)
T ss_pred cEEE-EEEcCHHHHHHHHHHHHHHHHHHHHh
Confidence 7877 454 3 36788999999987653
No 101
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=29.73 E-value=2.5e+02 Score=25.48 Aligned_cols=65 Identities=17% Similarity=0.267 Sum_probs=39.4
Q ss_pred ecceeceEEEEecceEEEEeccCC---ceeEEEEeccccccccccccccccCCeEEEEecCeEEEEecc
Q 006377 92 ESILLQGHMYLFVHFICFYSNIFG---FETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASF 157 (648)
Q Consensus 92 r~i~~~GrLYIS~~~iCF~S~ifg---~~tk~vIp~~dI~~I~K~kt~~i~pnaI~I~T~~~k~~F~SF 157 (648)
++-+.+=..|++++.|..-+...+ +...-.||+.++.-. ..+...-++|++.|.+..+.|.+..=
T Consensus 15 rk~~~~R~ffLFnD~LvY~~~~~~~~~~~~~~~i~L~~~~v~-~~~d~~~~~n~f~I~~~~kSf~v~A~ 82 (104)
T cd01218 15 RKKPKQRQFFLFNDILVYGNIVISKKKYNKQHILPLEGVQVE-SIEDDGIERNGWIIKTPTKSFAVYAA 82 (104)
T ss_pred cCCCceEEEEEecCEEEEEEeecCCceeeEeeEEEccceEEE-ecCCcccccceEEEecCCeEEEEEcC
Confidence 343344346777776666544333 234567899887432 22222346899999999888777543
No 102
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=29.24 E-value=76 Score=38.88 Aligned_cols=44 Identities=30% Similarity=0.379 Sum_probs=35.4
Q ss_pred CccchHHHHHHhhchhh-----HH-----HHHHHHHHHHHHHHHHHHHHHHhHH
Q 006377 599 SAESIPWLERRMHYLKD-----EM-----LMVEARLERMWHEHAVLRAQLKDIE 642 (648)
Q Consensus 599 ~~~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (648)
-+||++|=++-...|.| || .|||-|+|.|+.|..-||..++.||
T Consensus 292 ~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~dele 345 (1243)
T KOG0971|consen 292 AKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELE 345 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999887666655 44 4899999999999999998887654
No 103
>PRK14011 prefoldin subunit alpha; Provisional
Probab=29.12 E-value=99 Score=29.83 Aligned_cols=41 Identities=20% Similarity=0.213 Sum_probs=36.8
Q ss_pred CCccchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006377 598 RSAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQL 638 (648)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (648)
-..||+..+++|+..|..-+......|+.++.++.-|...|
T Consensus 85 ~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L 125 (144)
T PRK14011 85 DVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKEL 125 (144)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999988544
No 104
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=28.79 E-value=3.3e+02 Score=22.39 Aligned_cols=63 Identities=22% Similarity=0.309 Sum_probs=42.5
Q ss_pred EEEEecceEEEEeccC---CceeEEEEeccccccccccccc-----cccCCeEEEEecCe-EEEEeccCCHHHH
Q 006377 99 HMYLFVHFICFYSNIF---GFETKKIIPFYEVTAVRRAKTA-----GIFPNAIEIFAAGK-KYFFASFLSRDEA 163 (648)
Q Consensus 99 rLYIS~~~iCF~S~if---g~~tk~vIp~~dI~~I~K~kt~-----~i~pnaI~I~T~~~-k~~F~SF~~RD~a 163 (648)
.+.+..+.|.+|.+-- ....+..|++.++ .|...... .-.++.+.|.+.+. .|+|. .-+.++.
T Consensus 21 ~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~-~~s~~~~ 92 (104)
T PF00169_consen 21 YFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDC-TVRPDPSSDFLSNKKRKNCFEITTPNGKSYLFS-AESEEER 92 (104)
T ss_dssp EEEEETTEEEEESSTTTTTESSESEEEEGTTE-EEEEETSSTSTSTSSSSSEEEEEETTSEEEEEE-ESSHHHH
T ss_pred EEEEECCEEEEEecCccccceeeeEEEEecCc-eEEEcCccccccccCCCcEEEEEeCCCcEEEEE-cCCHHHH
Confidence 3456777788876654 4466789999999 55554333 24678999999875 77775 4455543
No 105
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=28.17 E-value=1.4e+02 Score=28.88 Aligned_cols=44 Identities=18% Similarity=0.465 Sum_probs=30.5
Q ss_pred EeeCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEeeeccchhhh
Q 006377 375 QEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKI 425 (648)
Q Consensus 375 t~t~DVPYGD~F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~I 425 (648)
++..|=||.- ..++|.+++.++ +.|+|.....-+| |+.++...|
T Consensus 77 ~~l~~GPFk~---L~~~W~F~pl~~---~~ckV~f~ldfeF-~s~ll~~~~ 120 (146)
T COG2867 77 MKLIDGPFKY---LKGGWQFTPLSE---DACKVEFFLDFEF-KSRLLGALI 120 (146)
T ss_pred hhhhcCChhh---hcCceEEEECCC---CceEEEEEEEeee-hhHHHHHHH
Confidence 3456666654 999999999753 3788888888887 444544444
No 106
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=27.90 E-value=51 Score=39.63 Aligned_cols=36 Identities=11% Similarity=0.138 Sum_probs=31.0
Q ss_pred CCccchHHHHHHhhchhhHHHHHHHHHHHHHHHHHH
Q 006377 598 RSAESIPWLERRMHYLKDEMLMVEARLERMWHEHAV 633 (648)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (648)
-+..+.+||++|+..|++++..+|+.++..|+++..
T Consensus 191 ~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l 226 (754)
T TIGR01005 191 SNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDL 226 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 356789999999999999999999999998876543
No 107
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=27.86 E-value=87 Score=35.86 Aligned_cols=38 Identities=18% Similarity=0.421 Sum_probs=27.7
Q ss_pred chHHHHHHhhchhhHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 006377 602 SIPWLERRMHYLKDEMLMV-------EARLERMWHEHAVLRAQLK 639 (648)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 639 (648)
..+=|||++..||-||.|. |++|+.|..|+..||+|++
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4456889999999888743 5556666677777777774
No 108
>PRK09039 hypothetical protein; Validated
Probab=27.58 E-value=90 Score=34.20 Aligned_cols=41 Identities=24% Similarity=0.187 Sum_probs=32.4
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006377 603 IPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQ 643 (648)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (648)
++=|++++..+|.+..-+-.+++++++|.+.||.||..||.
T Consensus 118 ~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~ 158 (343)
T PRK09039 118 AGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEA 158 (343)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456777777777777778899999999999999888764
No 109
>COG3132 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.55 E-value=89 Score=31.31 Aligned_cols=23 Identities=43% Similarity=0.533 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Q 006377 620 VEARLERMWHEHAVLRAQLKDIE 642 (648)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~ 642 (648)
.|||++.+++|.|.||+.|.+|.
T Consensus 190 learv~aLe~eva~L~~rld~ll 212 (215)
T COG3132 190 LEARVEALEQEVAELRARLDSLL 212 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999888764
No 110
>PF06017 Myosin_TH1: Myosin tail; InterPro: IPR010926 These proteins share a region of sequence similarity with the tail of myosin (for example O00159 from SWISSPROT). Myosins act as molecular motors. ; GO: 0003774 motor activity, 0016459 myosin complex
Probab=27.43 E-value=2.2e+02 Score=28.45 Aligned_cols=103 Identities=13% Similarity=0.160 Sum_probs=66.2
Q ss_pred hhhhhhhCC-CCCCCeeeeEEEEEEe---ecceeceE-EEEecceEEEEe-----ccCCceeEEEEeccccccccccccc
Q 006377 67 SEEYRQLFR-LPSEEVLVQDFNCAFQ---ESILLQGH-MYLFVHFICFYS-----NIFGFETKKIIPFYEVTAVRRAKTA 136 (648)
Q Consensus 67 n~~F~~lF~-LP~~E~LI~~f~CaL~---r~i~~~Gr-LYIS~~~iCF~S-----~ifg~~tk~vIp~~dI~~I~K~kt~ 136 (648)
+..+.+++. ...+|.+ -|+|... |..-.+-| |.||+++|+.-. .......+-.||+.+|..|.-...
T Consensus 34 ~~~~~~~~~~~~~~e~v--lFs~~v~K~nr~~K~~~R~livT~~~iY~l~~~~~~~~~~~~~kr~i~l~~I~~IsvS~~- 110 (199)
T PF06017_consen 34 NPKLQKILEKNEGDEKV--LFSDRVQKYNRRNKPQPRILIVTDKAIYLLDQRKVKDPKKYKLKRRIPLSDITGISVSPL- 110 (199)
T ss_pred cccHHHHHHhccCCcce--EEEEEEEEecCCCCccceEEEEeCCeEEEEEEeecCCceeeEEEeccCcccccEEEEccC-
Confidence 556666664 2224433 3555543 33333334 588999999986 555567788999999999987653
Q ss_pred cccCCeEEEEec-CeEEEEeccCCHHHHHHHHHHHHHhcC
Q 006377 137 GIFPNAIEIFAA-GKKYFFASFLSRDEAFKLITDGWLQHG 175 (648)
Q Consensus 137 ~i~pnaI~I~T~-~~k~~F~SF~~RD~a~~lI~~~w~~~~ 175 (648)
-.+-+.|... ...++|.+. .+-+....|..+++...
T Consensus 111 --~D~~~vihv~~~~D~il~~~-~k~Elv~~L~~~~~~~~ 147 (199)
T PF06017_consen 111 --SDNFFVIHVPGEGDLILESD-FKTELVTILCKAYKKAT 147 (199)
T ss_pred --CCCEEEEEECCCCCEEEEeC-cHHHHHHHHHHHHHHHh
Confidence 2344555544 467888764 56777888888887644
No 111
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=27.05 E-value=1.2e+02 Score=31.92 Aligned_cols=41 Identities=22% Similarity=0.309 Sum_probs=36.3
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHH-HHhHHHhh
Q 006377 605 WLERRMHYLKDEMLMVEARLERMWHEHAVLRAQ-LKDIEQLH 645 (648)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 645 (648)
=+.+|...|-+|+......+..+|.|.+-||+- +|..|++|
T Consensus 90 RFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 90 RFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999987 88888887
No 112
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=26.96 E-value=6.8e+02 Score=25.43 Aligned_cols=137 Identities=7% Similarity=0.020 Sum_probs=68.2
Q ss_pred eeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCCCceeEEEEEEeeeeeccCCceeeeeEEEEEEEe
Q 006377 285 AETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVY 364 (648)
Q Consensus 285 ~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~rg~tdi~~tpW~~~~~g~~~R~isY~~pl~~p~GPK~t~c~etQki~~~ 364 (648)
.+.+++.++.++..++..+ ...+ ...+.+ ...+..- +.....+-|....-.|+ ++---|.........
T Consensus 56 ~~~~i~a~~~~vl~~lld~-~~~W-d~~~~e--~~vIe~l-------d~~~~I~Yy~~~~PwP~-~~RD~V~~Rs~~~~~ 123 (204)
T cd08908 56 TTIEVPAAPEEILKRLLKE-QHLW-DVDLLD--SKVIEIL-------DSQTEIYQYVQNSMAPH-PARDYVVLRTWRTNL 123 (204)
T ss_pred EEEEeCCCHHHHHHHHHhh-HHHH-HHHhhh--eEeeEec-------CCCceEEEEEccCCCCC-CCcEEEEEEEEEEeC
Confidence 5678899999999998665 2122 222111 1111111 11233333432221222 111112211111112
Q ss_pred eCCeEEE-EEeEeeCCCCCCCceE---EEEEEEEEecCCCCCCceEEEEEEEEEEeeec--cc---hhhhhcchHHHHHH
Q 006377 365 RNSHLVI-ETSQEVHDVPYGDYFR---VEGLWDVMRDDGGSKEGCILRVYVNVAFSKKT--VW---KGKIVQSTLEECRD 435 (648)
Q Consensus 365 ~~~~~VI-etst~t~DVPYGD~F~---Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT--~~---K~~IEkst~~g~ke 435 (648)
.++.++| ..+.....+|-. +.+ +.++|.|++.+. ++|+|.--+.+...+.. |+ =|-|-..-+..+++
T Consensus 124 ~~g~~~I~~~Sv~h~~~P~~-~VR~~~~~~~w~i~P~g~---g~t~vtyi~~~DPgG~iP~W~~N~~g~~~~~~~~~~r~ 199 (204)
T cd08908 124 PKGACALLATSVDHDRAPVA-GVRVNVLLSRYLIEPCGS---GKSKLTYMCRIDLRGHMPEWYTKSFGHLCAAEVVKIRD 199 (204)
T ss_pred CCCeEEEEEeecCcccCCcC-ceEEEEEeeEEEEEECCC---CcEEEEEEEEeCCCCCCcHHHHhhHHHHHHHHHHHHHh
Confidence 3333444 444666778844 555 468899999753 48999999999886655 22 13344444444555
Q ss_pred HH
Q 006377 436 VY 437 (648)
Q Consensus 436 ~~ 437 (648)
+|
T Consensus 200 sf 201 (204)
T cd08908 200 SF 201 (204)
T ss_pred hc
Confidence 44
No 113
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=26.21 E-value=1.1e+02 Score=27.79 Aligned_cols=44 Identities=23% Similarity=0.358 Sum_probs=38.8
Q ss_pred CccchHHHHHHhhchhhHHHHHHHHHHHH--HHHHHHHHHHHHhHH
Q 006377 599 SAESIPWLERRMHYLKDEMLMVEARLERM--WHEHAVLRAQLKDIE 642 (648)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 642 (648)
+++.++=|+.|+..+..=+..+|.+|+-| ++|+.-|+..|..++
T Consensus 33 ~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~ 78 (106)
T PF10805_consen 33 KREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELR 78 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 46778889999999999999999999999 999999998888775
No 114
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=25.49 E-value=1.3e+02 Score=27.22 Aligned_cols=43 Identities=16% Similarity=0.253 Sum_probs=37.5
Q ss_pred CccchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 006377 599 SAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDI 641 (648)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (648)
-.|++.=|++|+..+.++....|.+++.++..+.-+.++|..+
T Consensus 65 ~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 65 KEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577899999999999999999999999999999888887654
No 115
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=25.09 E-value=1.7e+02 Score=27.59 Aligned_cols=45 Identities=13% Similarity=0.252 Sum_probs=40.7
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhc
Q 006377 603 IPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLHKR 647 (648)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (648)
|..|...|...+..+..++.++|.-|.++.--+...+-||+|+.+
T Consensus 73 l~~L~~~i~~q~~~v~~~~~~ve~~r~~~~ea~~~~k~~ekLker 117 (146)
T PRK07720 73 VTNLERTIDHYQLLVMQAREQMNRKQQDLTEKNIEVKKYEKMKEK 117 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999988888889999999754
No 116
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=24.89 E-value=44 Score=32.47 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=28.0
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006377 606 LERRMHYLKDEMLMVEARLERMWHEHAVLRAQLK 639 (648)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (648)
||.-+..+.+++..++..++++++++..|+..+.
T Consensus 44 lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 77 (151)
T PF14584_consen 44 LEDLLNELFDQIDELKEELEELEKRIEELEEKLR 77 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777888888888888888888888888887665
No 117
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=24.77 E-value=1.4e+02 Score=32.40 Aligned_cols=45 Identities=24% Similarity=0.277 Sum_probs=21.4
Q ss_pred ccchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 006377 600 AESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQL 644 (648)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (648)
-|.++||+|-+.-..-|...----...+|+|++.||.+|+..+.|
T Consensus 125 eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdel 169 (302)
T PF09738_consen 125 EETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDEL 169 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677766653332222222222334555555555555554443
No 118
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=24.77 E-value=5.1e+02 Score=23.25 Aligned_cols=32 Identities=13% Similarity=0.224 Sum_probs=24.8
Q ss_pred CceEEEEEEEEEecCCCCCCceEEEEEEEEEEeee
Q 006377 384 DYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKK 418 (648)
Q Consensus 384 D~F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~Ks 418 (648)
+....+.+|.+++.++ ++|+|.....+.+...
T Consensus 82 ~~~~~~g~w~~~~~~~---~~t~Vt~~~~~~~~~~ 113 (142)
T cd08861 82 PVASMSGEWRFEPLGG---GGTRVTLRHDFTLGID 113 (142)
T ss_pred ChhhheeEEEEEECCC---CcEEEEEEEEEEECCC
Confidence 4456788999999753 3799999988888743
No 119
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=24.31 E-value=2.3e+02 Score=32.49 Aligned_cols=46 Identities=15% Similarity=0.196 Sum_probs=34.9
Q ss_pred CCCCCccchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006377 595 LGQRSAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKD 640 (648)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (648)
.+.-..|-|+=|--++..|+.||+-++++=++++.|-..||....+
T Consensus 53 egDTP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~ 98 (472)
T TIGR03752 53 EGDTPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQS 98 (472)
T ss_pred CCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3456678888888999999999988888777777777777664433
No 120
>cd04781 HTH_MerR-like_sg6 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 6) with at least two conserved cysteines present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, an
Probab=24.19 E-value=1.6e+02 Score=26.88 Aligned_cols=48 Identities=10% Similarity=0.121 Sum_probs=30.2
Q ss_pred CCCCccchHHHHHHhhchhh--------------------HHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 006377 596 GQRSAESIPWLERRMHYLKD--------------------EMLMVEARLERMWHEHAVLRAQLKDIEQL 644 (648)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (648)
--|+.+.+.||+ .|..||+ ...+++++++.+.++...|....+.|+.+
T Consensus 36 R~Y~~~~l~~l~-~I~~lr~~G~~L~eI~~~l~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~L~~~ 103 (120)
T cd04781 36 RQYDPQVLDRLA-LIALGRAAGFSLDEIQAMLSHDGKPPIDRQLLKAKAAELDQQIQRLQAMRELLRHV 103 (120)
T ss_pred eecCHHHHHHHH-HHHHHHHcCCCHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999997 4555543 12455566666666666666665555544
No 121
>PF08512 Rtt106: Histone chaperone Rttp106-like; InterPro: IPR013719 This is a domain of unknown function that is associated with a number of different protein families. It is found in Rtt106p, which is a histone chaperone involved in heterochromatin-mediated silencing []. It is also found in genes annotated as transcription factors/regulators. This domain is the C-terminal domain of yeast Spt16p P32558 from SWISSPROT, which is a subunit of the heterodimeric yeast FACT complex (Spt16p-Pob3p, IPR000969 from INTERPRO) []. In addition Spt16p and its relatives, in this entry, are described as non-peptidase homologues belonging to the MEROPS peptidase family M24. The FACT complex facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. ; PDB: 3TW1_A 3GYO_A 3TO1_A 3FSS_A 3TVV_B 3GYP_A 2GCJ_D 2GCL_A.
Probab=24.06 E-value=4e+02 Score=23.53 Aligned_cols=78 Identities=15% Similarity=0.275 Sum_probs=47.2
Q ss_pred EEEEEeecceeceEEEEecceEEEEeccCCceeEEEEecccccccccccc--ccccCCeEEEEecC---eEEEEeccCCH
Q 006377 86 FNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKT--AGIFPNAIEIFAAG---KKYFFASFLSR 160 (648)
Q Consensus 86 f~CaL~r~i~~~GrLYIS~~~iCF~S~ifg~~tk~vIp~~dI~~I~K~kt--~~i~pnaI~I~T~~---~k~~F~SF~~R 160 (648)
..|.+.. -.|-||..++.|-|-- .+--+.|+++||..|.=... ...-.=-+.|.+++ ..+.|++. +|
T Consensus 4 V~c~~ka---~~g~L~pl~~~l~f~~----~kP~~~i~~~dI~~v~feRv~~~~~ktFDl~v~~k~~~~~~~~fs~I-~~ 75 (95)
T PF08512_consen 4 VKCSYKA---NEGFLYPLEKCLLFGL----EKPPFVIPLDDIESVEFERVSSFSSKTFDLVVILKDYEGPPHEFSSI-DR 75 (95)
T ss_dssp EEEEETT---EEEEEEEESSEEEEEC----SSS-EEEEGGGEEEEEEE--ESSSSSEEEEEEEETT-TS-EEEEEEE-EG
T ss_pred eeEeccc---cCEEEEEccceEEEec----CCCeEEEEhhHeeEEEEEecccCcceEEEEEEEEecCCCCcEEEeeE-CH
Confidence 3566554 3699999999665511 13357999999999886442 11111257777764 78999876 44
Q ss_pred HHHHHHHHHHHH
Q 006377 161 DEAFKLITDGWL 172 (648)
Q Consensus 161 D~a~~lI~~~w~ 172 (648)
++ |+.|.+..+
T Consensus 76 ~e-~~~l~~~l~ 86 (95)
T PF08512_consen 76 EE-YDNLKDFLK 86 (95)
T ss_dssp GG-HHHHHHHHH
T ss_pred HH-HHHHHHHHH
Confidence 43 555555433
No 122
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=23.93 E-value=97 Score=30.83 Aligned_cols=21 Identities=19% Similarity=0.123 Sum_probs=15.1
Q ss_pred CCCCCCccchHHHHHHhhchh
Q 006377 594 GLGQRSAESIPWLERRMHYLK 614 (648)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~ 614 (648)
|-.-|+.+.|+||+.-.++..
T Consensus 34 G~R~y~~~dl~~L~~I~~l~~ 54 (175)
T PRK13182 34 GHYIFTEEDLQLLEYVKSQIE 54 (175)
T ss_pred CCEEECHHHHHHHHHHHHHHH
Confidence 445689999999986554443
No 123
>PRK04406 hypothetical protein; Provisional
Probab=23.66 E-value=2.3e+02 Score=24.28 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=28.8
Q ss_pred HHHHHhhchhhHHHHHHHHHHH-------HHHHHHHHHHHHHhH-HHhhh
Q 006377 605 WLERRMHYLKDEMLMVEARLER-------MWHEHAVLRAQLKDI-EQLHK 646 (648)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-~~~~~ 646 (648)
=++.||..|-.-+.--|..+|. .+++...|+.+|+.| +||+.
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3667777776666666666665 477788888888877 56654
No 124
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=23.52 E-value=27 Score=32.22 Aligned_cols=39 Identities=23% Similarity=0.366 Sum_probs=0.4
Q ss_pred HHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q 006377 607 ERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLH 645 (648)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (648)
+...--+-.+..-.|+.+++|+.|.+-||..+..||...
T Consensus 5 d~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~~ 43 (118)
T PF08286_consen 5 DNEKFRLAKELSDLESELESLQSELEELKEELEELEEQE 43 (118)
T ss_dssp --------------------------------------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445566777889999999999999999999998654
No 125
>PF14182 YgaB: YgaB-like protein
Probab=23.41 E-value=1.1e+02 Score=26.63 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHh
Q 006377 621 EARLERMWHEHAVLRAQLKDIEQL 644 (648)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~ 644 (648)
||.|..+|.|.+..|..|+.+.++
T Consensus 39 ea~l~~i~~EI~~mkk~Lk~Iq~~ 62 (79)
T PF14182_consen 39 EAELHSIQEEISQMKKELKEIQRV 62 (79)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999998765
No 126
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=23.10 E-value=1.4e+02 Score=28.46 Aligned_cols=45 Identities=24% Similarity=0.348 Sum_probs=30.0
Q ss_pred CccchHHHHHHhhchhhHHHHHHHHHHHHH--------HHHHHHHHHHHhHHH
Q 006377 599 SAESIPWLERRMHYLKDEMLMVEARLERMW--------HEHAVLRAQLKDIEQ 643 (648)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 643 (648)
|-+++.|.=++|..|+.|+.-.|+.|+..- .+.+-|++.++.|+.
T Consensus 1 ~~~~a~~al~ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~ 53 (149)
T PF07352_consen 1 DREEADWALRKIAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEG 53 (149)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999998888776433 333444444554444
No 127
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=22.88 E-value=1.9e+02 Score=27.71 Aligned_cols=42 Identities=19% Similarity=0.228 Sum_probs=37.4
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 006377 603 IPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQL 644 (648)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (648)
+.|+..|.+.|+.+..-+...+..++.+..-++.||..|..+
T Consensus 14 ~~~~~~~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~ 55 (135)
T TIGR03495 14 LGWQSQRLRNARADLERANRVLKAQQAELASKANQLIVLLAL 55 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 569999999999999999999999999999999999887654
No 128
>cd04775 HTH_Cfa-like Helix-Turn-Helix DNA binding domain of Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulators; the HTH domain of Cfa, a cyclopropane fatty acid synthase, and other related methyltransferases, as well as, the N-terminal domain of a conserved, uncharacterized ~172 a.a. protein. Based on sequence similarity of the N-terminal domain, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimil
Probab=22.55 E-value=1.8e+02 Score=25.96 Aligned_cols=47 Identities=23% Similarity=0.316 Sum_probs=32.6
Q ss_pred CCCccchHHHHHHhhchh----------------hHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 006377 597 QRSAESIPWLERRMHYLK----------------DEMLMVEARLERMWHEHAVLRAQLKDIEQL 644 (648)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (648)
-|+.+.|+||..= ..|+ +...+.+.+++.++++..-|+..++.|+.|
T Consensus 38 ~Y~~~dl~~l~~I-~~l~~~G~~l~ei~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~ 100 (102)
T cd04775 38 LYSEADLSRLEKI-VFLQAGGLPLEEIAGCLAQPHVQAILEERLQSLNREIQRLRQQQQVLAAI 100 (102)
T ss_pred eeCHHHHHHHHHH-HHHHHCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999998742 2222 234566777777888777777777777765
No 129
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=22.55 E-value=3.1e+02 Score=24.79 Aligned_cols=53 Identities=11% Similarity=0.176 Sum_probs=32.9
Q ss_pred EEEEEEEEEecCCCCCCceEEEEEEEEEEeeeccchhhhhcchHHHHHHHHHHHHHH
Q 006377 387 RVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGM 443 (648)
Q Consensus 387 ~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~~~~wv~~ 443 (648)
..+..|.+++.++ ++|+|.....+++.. .+...++..-..+..+.....+.+.
T Consensus 82 ~~~g~w~~~p~~~---~~T~v~~~~~~~~~~-~l~~~l~~~~~~~~~~~~l~~f~~~ 134 (138)
T cd07813 82 HLEGEWRFKPLGE---NACKVEFDLEFEFKS-RLLEALAGLVFDEVAKKMVDAFEKR 134 (138)
T ss_pred hceeEEEEEECCC---CCEEEEEEEEEEECC-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999863 479999888888853 4444444433333444444444433
No 130
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=22.46 E-value=1.7e+02 Score=31.68 Aligned_cols=43 Identities=30% Similarity=0.396 Sum_probs=35.4
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q 006377 603 IPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLH 645 (648)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (648)
-.|-+=|+.++..=..-.+.+++.|+.|.+.|.++++.|..+.
T Consensus 137 ~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~ 179 (325)
T PF08317_consen 137 KMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELL 179 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688889888877777788899999999999998888876553
No 131
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=22.42 E-value=1e+02 Score=30.37 Aligned_cols=46 Identities=17% Similarity=0.375 Sum_probs=28.3
Q ss_pred CCCccchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006377 597 QRSAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 642 (648)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (648)
.++...+.++++++..|.+|+.--+.++.....++.-+|.....+.
T Consensus 77 ~~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 77 PRLQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred hhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4555677788888877777776666555555555555544444433
No 132
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=22.13 E-value=1.3e+02 Score=24.21 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Q 006377 618 LMVEARLERMWHEHAVLRAQLKDIE 642 (648)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (648)
.-|.++|..++.|-..||++|+.+.
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3478899999999999999998653
No 133
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=21.90 E-value=8.6e+02 Score=24.79 Aligned_cols=50 Identities=12% Similarity=0.102 Sum_probs=35.0
Q ss_pred CeEEEEEeEeeCCCCCCCceEE---EEEEEEEecCCCCCCceEEEEEEEEEEeeec
Q 006377 367 SHLVIETSQEVHDVPYGDYFRV---EGLWDVMRDDGGSKEGCILRVYVNVAFSKKT 419 (648)
Q Consensus 367 ~~~VIetst~t~DVPYGD~F~V---e~R~~It~~~~~sk~~C~L~V~~~V~F~KsT 419 (648)
.+.++..+..-++.|--++.+. .++|.|++.++ ++|+|.--+.+.+.+..
T Consensus 127 ~~vi~~~Sv~H~~~p~~g~VRa~~~~~gylI~P~~~---g~trvt~i~~vDpkG~~ 179 (205)
T cd08909 127 ACSLVSVSVEHEEAPLLGGVRAVVLDSQYLIEPCGS---GKSRLTHICRVDLKGHS 179 (205)
T ss_pred cEEEEEecCCCCcCCCCCcEEEEEEcCcEEEEECCC---CCEEEEEEEEecCCCCC
Confidence 4344555555566776555554 46799999863 38999999999997655
No 134
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=21.75 E-value=1.8e+02 Score=25.78 Aligned_cols=33 Identities=27% Similarity=0.349 Sum_probs=30.1
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006377 610 MHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 642 (648)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (648)
+..|+.|+..+|..++.-.|+.-.|+.+++.|+
T Consensus 3 Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~ 35 (86)
T PF12958_consen 3 LEELQAEIEKAEKKLEQAEHKIKQLENRKKKLE 35 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999987
No 135
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=21.48 E-value=95 Score=35.25 Aligned_cols=34 Identities=15% Similarity=0.316 Sum_probs=29.9
Q ss_pred CccchHHHHHHhhchhhHHHHHHHHHHHHHHHHH
Q 006377 599 SAESIPWLERRMHYLKDEMLMVEARLERMWHEHA 632 (648)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (648)
...+.+||++++..+++++.-+|..|+..|.++.
T Consensus 159 ~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~ 192 (498)
T TIGR03007 159 SDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENG 192 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3458999999999999999999999999887654
No 136
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=21.26 E-value=1.1e+02 Score=31.80 Aligned_cols=43 Identities=14% Similarity=0.206 Sum_probs=34.2
Q ss_pred hHHHHHH----hhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q 006377 603 IPWLERR----MHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLH 645 (648)
Q Consensus 603 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (648)
..||-+| |..|.+.-.-.+..+|++++|...||.+|+.|+..+
T Consensus 96 ~lsiL~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ql~~~~ 142 (232)
T KOG2483|consen 96 TLSILDKALEHIQSLERKSATQQQDIEDLSRENRKLKARLEQLSLPQ 142 (232)
T ss_pred hhHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 5666665 345777778888899999999999999999877443
No 137
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=21.24 E-value=2e+02 Score=26.96 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=34.9
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006377 606 LERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQ 643 (648)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (648)
++..+.+|++-...++..++.|..++++++.+++.+..
T Consensus 92 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~ 129 (140)
T PRK03947 92 LDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQ 129 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999987754
No 138
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=21.14 E-value=4.2e+02 Score=20.93 Aligned_cols=64 Identities=20% Similarity=0.332 Sum_probs=40.8
Q ss_pred eEEEEecceEEEEeccCC---ceeEEEEeccccccccccccccccCCeEEEEecC-eEEEEeccCCHHHH
Q 006377 98 GHMYLFVHFICFYSNIFG---FETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAG-KKYFFASFLSRDEA 163 (648)
Q Consensus 98 GrLYIS~~~iCF~S~ifg---~~tk~vIp~~dI~~I~K~kt~~i~pnaI~I~T~~-~k~~F~SF~~RD~a 163 (648)
..+++..+.+.++....+ ......|++.+ ..|.......-.++++.|.+.+ ..|.|. ..+.+++
T Consensus 19 ~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~-~~v~~~~~~~~~~~~f~i~~~~~~~~~~~-~~s~~~~ 86 (96)
T cd00821 19 RWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSG-AEVEESPDDSGRKNCFEIRTPDGRSYLLQ-AESEEER 86 (96)
T ss_pred EEEEEECCEEEEEECCCCCcCCCCcceEEcCC-CEEEECCCcCCCCcEEEEecCCCcEEEEE-eCCHHHH
Confidence 456667777777766544 45667888888 5555544322246799999887 778775 3344443
No 139
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=21.05 E-value=1.3e+02 Score=31.28 Aligned_cols=30 Identities=30% Similarity=0.462 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 006377 615 DEMLMVEARLERMWHEHAVLRAQLKDIEQL 644 (648)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (648)
+||..+|.+|-+.|.|...|+.+++.|++-
T Consensus 162 ~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 162 EDLLEIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578889999999999999999999998763
No 140
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=20.93 E-value=6.6e+02 Score=23.10 Aligned_cols=98 Identities=13% Similarity=0.175 Sum_probs=57.8
Q ss_pred eeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCCCceeEEEEEEeeeeeccCCceeeeeEEEEEEEe
Q 006377 285 AETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVY 364 (648)
Q Consensus 285 ~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~rg~tdi~~tpW~~~~~g~~~R~isY~~pl~~p~GPK~t~c~etQki~~~ 364 (648)
+..++++|+++||+.|-. ....++.+..|.. + . ...+ .-++|.+.++. +. .+.+..+ ..-
T Consensus 3 I~~~l~v~a~~ff~~l~~----s~~~DI~~~tgk~-~--~------~~~L-~G~~Y~K~~~~--~~-~~~v~It---~~~ 62 (120)
T PF11687_consen 3 ISKTLNVSAEEFFDYLID----SLLYDIKQATGKK-L--P------VKQL-KGFSYQKKFKN--KR-EAKVKIT---EYE 62 (120)
T ss_pred EEEEecCCHHHHHHHHHH----HHHHHHHHHcCCC-C--C------hhhc-CCcEEEEEcCC--CC-EEEEEEE---EEc
Confidence 357899999999999843 2455555544432 1 1 1122 45688888764 11 2222222 233
Q ss_pred eCCeEEEEEeEeeCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEE
Q 006377 365 RNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNV 413 (648)
Q Consensus 365 ~~~~~VIetst~t~DVPYGD~F~Ve~R~~It~~~~~sk~~C~L~V~~~V 413 (648)
.+..|.+...+. .|. ...+|.+...+. +.|+|...=.+
T Consensus 63 ~~~~Y~~~~~s~-----~~~---~~i~Y~i~~~~~---~~~~v~y~E~~ 100 (120)
T PF11687_consen 63 PNKRYAATFSSS-----RGT---FTISYEIEPLDD---GSIEVTYEEEY 100 (120)
T ss_pred CCCEEEEEEEec-----CCC---EEEEEEEEECCC---CcEEEEEEEEE
Confidence 677888887654 222 677899998763 25776655444
No 141
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=20.91 E-value=1.7e+02 Score=30.36 Aligned_cols=35 Identities=23% Similarity=0.402 Sum_probs=20.1
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006377 606 LERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKD 640 (648)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (648)
++.|+..|++++.....+++..|.+.+-+|..|+.
T Consensus 68 ~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 68 LRERLERLRERIERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666665555666655555555555544
No 142
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=20.82 E-value=2.1e+02 Score=26.17 Aligned_cols=38 Identities=24% Similarity=0.395 Sum_probs=35.0
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006377 606 LERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQ 643 (648)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (648)
+++.+.+|++....++..++.|.+++++|+.++..++.
T Consensus 84 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~ 121 (126)
T TIGR00293 84 AEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQ 121 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999988753
No 143
>PRK09343 prefoldin subunit beta; Provisional
Probab=20.73 E-value=2e+02 Score=26.68 Aligned_cols=42 Identities=14% Similarity=0.195 Sum_probs=38.6
Q ss_pred ccchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 006377 600 AESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDI 641 (648)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (648)
.|++.=|++|+.++..++.-.|...++++..+.-+..+|..+
T Consensus 70 ~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 70 TKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999988765
No 144
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=20.64 E-value=48 Score=35.34 Aligned_cols=8 Identities=13% Similarity=0.227 Sum_probs=4.1
Q ss_pred cccccCCc
Q 006377 543 FVKRQSGV 550 (648)
Q Consensus 543 ~~~~~~~~ 550 (648)
|+|+.+..
T Consensus 3 f~~~~~~~ 10 (283)
T TIGR00219 3 FLVKPKLF 10 (283)
T ss_pred CCcCCchH
Confidence 55555543
No 145
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.26 E-value=1.5e+02 Score=30.38 Aligned_cols=32 Identities=19% Similarity=0.276 Sum_probs=26.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 006377 612 YLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLHK 646 (648)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (648)
.+|+|| |-.++.||.++..||.||+.++..|+
T Consensus 96 q~k~Ei---ersi~~a~~kie~lkkql~eaKi~r~ 127 (222)
T KOG3215|consen 96 QKKLEI---ERSIQKARNKIELLKKQLHEAKIVRL 127 (222)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356676 67899999999999999999988654
No 146
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=20.13 E-value=2.2e+02 Score=23.57 Aligned_cols=30 Identities=33% Similarity=0.430 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhHHHhhhc
Q 006377 618 LMVEARLERMWHEHAV-LRAQLKDIEQLHKR 647 (648)
Q Consensus 618 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 647 (648)
+-||.-|+=|++||+. |+.==+.+|+|+++
T Consensus 6 ~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~~ 36 (60)
T PF14916_consen 6 QSLEKSILFLQQEHAQTLKGLHAEIERLQKR 36 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4466777777777776 44444456666653
No 147
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=20.08 E-value=1.3e+02 Score=34.32 Aligned_cols=25 Identities=20% Similarity=0.421 Sum_probs=19.2
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHH
Q 006377 603 IPWLERRMHYLKDEMLMVEARLERM 627 (648)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (648)
++=+++|++.|+++|...+..++.+
T Consensus 165 ~~L~~~Rl~~L~~qi~~~~~~l~~~ 189 (475)
T PF10359_consen 165 IELIQERLDELEEQIEKHEEKLGEL 189 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4567888888888888887777764
No 148
>PF01814 Hemerythrin: Hemerythrin HHE cation binding domain; InterPro: IPR012312 The haemerythrin family is composed of haemerythrin proteins found in invertebrates, and a broader collection of bacterial and archaeal homologues. Haemerythrin is an oxygen-binding protein found in the vascular system and coelemic fluid, or in muscles (myohaemerythrin) in invertebrates []. Many of the homologous proteins found in prokaryotes are multi-domain proteins with signal-transducing domains such as the GGDEF diguanylate cyclase domain (IPR000160 from INTERPRO) and methyl-accepting chemotaxis protein (MCP) signalling domain (IPR004089 from INTERPRO). Most haemerythrins are oxygen-carriers with a bound non-haem iron, but at least one example is a cadmium-binding protein, apparently with a role in sequestering toxic metals rather than in binding oxygen. The prokaryote with the most instances of this domain is Magnetococcus sp. MC-1, a magnetotactic bacterium. Haemerythrins and myohaemerythrins [, ] are small proteins of about 110 to 129 amino acid residues that bind two iron atoms. They are left-twisted 4-alpha-helical bundles, which provide a hydrophobic pocket where dioxygen binds as a peroxo species, interacting with adjacent aliphatic side chains via van der Waals forces []. In both haemerythrins and myohaemerythrins, the active centre is a binuclear iron complex, bound directly to the protein via 7 amino acid side chains [], 5 His, 1 Glu and 1 Asp []. Ovohaemerythrin [], a yolk protein from the leech Theromyzon tessulatum seems to belong to this family of proteins, it may play a role in the detoxification of free iron after a blood meal []. This entry represents a haemerythrin/HHE cation-binding motif that occurs as a duplicated domain in haemerythrin and related proteins. This domain binds iron in haemerythrin, but can bind other metals in related proteins, such as cadmium in a Nereis diversicolor protein (P80255 from SWISSPROT). A bacterial protein, Q7WX96 from SWISSPROT, is a regulator of response to NO, which suggests a different set-up for its metal ligands. A protein from Cryptococcus neoformans (Filobasidiella neoformans) that contains haemerythrin/HHE cation-binding motifs is also involved in NO response []. A Staphylococcus aureus protein (P72360 from SWISSPROT) has been noted to be important when the organism switches to living in environments with low oxygen concentrations; perhaps this protein acts as an oxygen store or scavenger.; PDB: 3CAX_A 3V5Z_B 3U9M_G 3V5Y_A 3U9J_B 3V5X_A 2MHR_A 1A7E_A 1A7D_A 2IGF_P ....
Probab=20.02 E-value=2e+02 Score=25.20 Aligned_cols=36 Identities=28% Similarity=0.469 Sum_probs=28.6
Q ss_pred HhhchhhHHHH----------HHHHHHHHHHHHHHHHHHHHhHHHh
Q 006377 609 RMHYLKDEMLM----------VEARLERMWHEHAVLRAQLKDIEQL 644 (648)
Q Consensus 609 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (648)
+.|+-.||..+ .-+.++.|++||.-++..++.|+..
T Consensus 48 ~~H~~~EE~~l~p~l~~~~~~~~~~~~~~~~eH~~~~~~l~~l~~~ 93 (133)
T PF01814_consen 48 RHHHAREEEYLFPALERRDPRGDALIAELRREHEEIRALLDELEEA 93 (133)
T ss_dssp HHHHHHHHHHHHTTHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccchhccccchhhHHHHHHHHHHHHHHHHHH
Confidence 66777777776 2356679999999999999998765
Done!