Query 006377
Match_columns 648
No_of_seqs 234 out of 793
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 23:24:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006377.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006377hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hth_B Vacuolar protein sortin 92.7 1.4 4.7E-05 40.8 12.4 97 76-174 13-131 (140)
2 1lw3_A Myotubularin-related pr 91.0 2 6.8E-05 49.1 13.6 98 73-170 78-185 (657)
3 2cay_A VPS36 PH domain, vacuol 90.8 0.97 3.3E-05 42.1 9.1 96 77-175 26-136 (145)
4 2qim_A PR10.2B; trans-zeatin, 90.7 10 0.00035 35.0 16.6 149 283-452 6-155 (158)
5 1icx_A Protein LLR18A, LLPR10. 90.6 6.4 0.00022 36.3 14.7 149 283-452 5-153 (155)
6 1zsq_A Myotubularin-related pr 90.4 2.6 9E-05 47.1 13.7 96 74-169 7-112 (528)
7 4a8u_A Major pollen allergen B 89.6 11 0.00037 35.1 15.4 150 284-453 6-156 (159)
8 2vq5_A S-norcoclaurine synthas 89.2 3.8 0.00013 40.0 12.3 160 283-474 31-196 (201)
9 1em2_A MLN64 protein; beta bar 88.9 5.2 0.00018 38.9 13.3 80 365-446 142-225 (229)
10 1e09_A PRU AV 1; allergen, maj 88.7 7.3 0.00025 36.1 13.6 149 283-452 5-155 (159)
11 1tw0_A Pathogenesis-related cl 88.6 11 0.00036 34.9 14.5 150 283-452 5-154 (157)
12 2flh_A Cytokinin-specific bind 88.4 7.2 0.00025 36.1 13.2 142 283-451 5-153 (155)
13 2vjg_A Major allergen DAU C 1; 88.2 16 0.00055 33.8 15.5 146 283-450 6-153 (154)
14 1t77_A Lipopolysaccharide-resp 87.6 0.86 2.9E-05 49.4 7.1 80 82-162 3-97 (414)
15 3p0l_A Steroidogenic acute reg 86.9 4 0.00014 39.6 10.9 147 285-443 59-211 (221)
16 2i9y_A Major latex protein-lik 86.7 6.9 0.00023 36.7 12.1 147 281-451 17-165 (166)
17 1jss_A Stard4, cholesterol-reg 86.3 4.7 0.00016 39.2 11.2 144 285-442 71-219 (224)
18 3rws_A MTN13 protein; zeatin, 84.7 19 0.00063 34.0 14.0 146 282-453 10-162 (168)
19 2r55_A STAR-related lipid tran 82.5 11 0.00038 36.5 11.9 78 365-444 144-226 (231)
20 2yf0_A Myotubularin-related pr 81.7 2.9 9.8E-05 46.6 8.0 72 93-169 22-97 (512)
21 2wql_A Major allergen DAU C 1; 80.9 35 0.0012 31.6 15.4 145 285-450 8-153 (154)
22 1ci6_A Transcription factor AT 77.5 3 0.0001 33.3 4.8 38 603-640 25-62 (63)
23 3qsz_A STAR-related lipid tran 77.3 32 0.0011 32.0 12.9 74 366-444 100-177 (189)
24 1t2k_D Cyclic-AMP-dependent tr 76.9 3.4 0.00012 32.6 4.9 38 601-638 22-59 (61)
25 2ns9_A Hypothetical protein AP 73.4 48 0.0016 29.2 15.2 139 282-449 14-155 (157)
26 2pcs_A Conserved protein; stru 71.5 56 0.0019 29.1 17.3 145 283-454 5-152 (162)
27 1ln1_A PC-TP, phosphatidylchol 70.0 52 0.0018 31.0 12.6 144 284-444 55-207 (214)
28 2pso_A STAR-related lipid tran 66.8 26 0.0009 34.4 9.9 78 368-454 151-231 (237)
29 3p9v_A Uncharacterized protein 65.8 79 0.0027 28.7 15.8 67 383-454 88-155 (161)
30 3kl1_A PYL2, putative uncharac 62.3 1.1E+02 0.0038 29.2 13.9 150 280-451 34-184 (190)
31 1pfj_A TFIIH basal transcripti 61.6 36 0.0012 30.0 8.6 93 77-174 4-103 (108)
32 1fxk_A Prefoldin; archaeal pro 60.2 10 0.00036 32.4 4.9 43 598-640 62-104 (107)
33 2zqm_A Prefoldin beta subunit 59.8 12 0.00042 32.5 5.3 44 598-641 67-110 (117)
34 3ie5_A Phenolic oxidative coup 58.0 1.2E+02 0.0041 28.2 14.4 148 282-453 11-162 (165)
35 2dn6_A KIAA0640 protein; PH do 57.8 49 0.0017 27.6 8.8 62 101-163 30-91 (115)
36 1nkp_B MAX protein, MYC proto- 57.0 9 0.00031 31.8 3.8 34 609-642 48-81 (83)
37 2cod_A Centaurin-delta 1; ARF 56.1 16 0.00056 30.9 5.5 52 101-157 31-82 (115)
38 1fxk_C Protein (prefoldin); ar 55.5 17 0.00058 32.6 5.6 44 599-642 86-129 (133)
39 1nlw_A MAD protein, MAX dimeri 55.1 12 0.00041 31.1 4.2 33 609-641 48-80 (80)
40 3f08_A Uncharacterized protein 53.7 1.2E+02 0.0042 27.1 13.4 130 285-449 6-137 (146)
41 2wt7_A Proto-oncogene protein 52.4 22 0.00075 28.1 5.2 37 603-639 25-61 (63)
42 3efg_A Protein SLYX homolog; x 52.3 15 0.00051 30.5 4.3 40 603-642 23-62 (78)
43 2yy0_A C-MYC-binding protein; 51.5 13 0.00046 28.6 3.6 29 612-640 23-51 (53)
44 1nkp_A C-MYC, MYC proto-oncoge 50.1 15 0.00052 31.0 4.1 34 610-643 54-87 (88)
45 1hjb_A Ccaat/enhancer binding 49.1 22 0.00075 30.2 4.9 35 606-640 41-75 (87)
46 1fao_A Dual adaptor of phospho 48.6 40 0.0014 28.9 6.8 56 101-157 40-95 (126)
47 2l9p_A Uncharacterized protein 48.4 92 0.0032 28.0 9.6 21 281-301 8-28 (164)
48 2xdj_A Uncharacterized protein 46.7 30 0.001 29.1 5.3 37 604-640 23-59 (83)
49 2zdi_C Prefoldin subunit alpha 46.5 23 0.00078 32.6 5.1 45 599-643 96-140 (151)
50 3a7p_A Autophagy protein 16; c 46.4 27 0.00093 32.6 5.4 41 603-643 77-117 (152)
51 3k3k_A Abscisic acid receptor 46.1 84 0.0029 30.8 9.3 147 279-451 48-198 (211)
52 2e3n_A Lipid-transfer protein 45.7 70 0.0024 31.3 8.9 82 367-449 156-249 (255)
53 3ghg_A Fibrinogen alpha chain; 44.4 24 0.00081 39.1 5.4 38 606-643 115-152 (562)
54 3mq7_A Bone marrow stromal ant 44.0 33 0.0011 30.6 5.3 38 603-640 73-110 (121)
55 1gu4_A CAAT/enhancer binding p 43.9 17 0.00057 30.3 3.3 32 607-638 42-73 (78)
56 1jnm_A Proto-oncogene C-JUN; B 43.1 14 0.00048 29.1 2.6 37 602-638 23-59 (62)
57 3ajw_A Flagellar FLIJ protein; 42.1 40 0.0014 30.2 6.0 45 603-647 76-120 (150)
58 1g6u_A Domain swapped dimer; d 41.2 74 0.0025 23.1 5.8 27 615-641 20-46 (48)
59 3m91_A Proteasome-associated A 39.7 65 0.0022 24.6 5.7 41 601-641 9-49 (51)
60 3q0x_A Centriole protein; cent 39.5 41 0.0014 33.5 5.9 39 603-641 166-204 (228)
61 3bbp_D GRIP and coiled-coil do 36.7 34 0.0012 27.8 3.9 49 600-648 21-69 (71)
62 1deq_A Fibrinogen (alpha chain 36.0 37 0.0013 36.1 5.2 39 605-643 117-155 (390)
63 2d9z_A Protein kinase C, NU ty 35.3 39 0.0014 30.7 4.6 54 103-156 32-90 (129)
64 1w7p_D VPS36P, YLR417W; ESCRT- 34.8 8.2 0.00028 43.4 0.0 41 95-135 42-82 (566)
65 3mtu_A Tropomyosin alpha-1 cha 34.5 78 0.0027 25.9 5.9 45 602-646 3-47 (75)
66 1v5u_A SBF1, SET binding facto 32.5 1.8E+02 0.0061 24.0 8.3 65 104-169 35-105 (117)
67 2coa_A Protein kinase C, D2 ty 32.3 35 0.0012 30.9 3.7 53 103-155 32-89 (125)
68 1pls_A Pleckstrin homology dom 31.9 2.2E+02 0.0074 23.5 9.0 62 101-163 27-89 (113)
69 1zc3_B Exocyst complex protein 31.7 1.6E+02 0.0053 25.6 7.9 58 99-157 29-90 (113)
70 2gcl_A Hypothetical 63.0 kDa p 31.6 65 0.0022 32.6 6.0 79 85-175 166-252 (261)
71 1eaz_A Tandem PH domain contai 30.3 1.1E+02 0.0036 25.8 6.5 56 101-156 36-93 (125)
72 1zyi_A Methylosome subunit pic 28.6 48 0.0016 31.5 4.2 47 85-134 31-79 (171)
73 1deb_A APC protein, adenomatou 27.9 1.5E+02 0.0052 22.6 5.9 41 603-643 12-52 (54)
74 3trt_A Vimentin; cytoskeleton, 27.7 99 0.0034 24.9 5.5 42 601-642 28-69 (77)
75 3p51_A Uncharacterized protein 27.5 3.5E+02 0.012 24.6 12.8 135 285-453 6-145 (160)
76 2le1_A Uncharacterized protein 25.7 3.3E+02 0.011 23.6 10.2 18 285-303 6-23 (151)
77 3f5r_A FACT complex subunit PO 25.4 2.6E+02 0.0088 27.0 8.7 87 84-174 24-117 (191)
78 2xdj_A Uncharacterized protein 24.4 1.5E+02 0.0051 24.8 6.0 26 618-643 23-48 (83)
79 3m9b_A Proteasome-associated A 24.2 87 0.003 31.6 5.3 43 600-642 53-95 (251)
80 3he5_B Synzip2; heterodimeric 23.9 2.2E+02 0.0074 21.0 5.9 40 604-643 6-45 (52)
81 1nkp_B MAX protein, MYC proto- 23.4 59 0.002 26.7 3.4 33 602-634 48-80 (83)
82 1gd2_E Transcription factor PA 23.4 88 0.003 25.4 4.2 35 608-642 29-63 (70)
83 3qrz_A Abscisic acid receptor 22.4 16 0.00054 36.3 -0.5 143 280-447 77-219 (223)
84 2d4r_A Hypothetical protein TT 22.3 3.2E+02 0.011 22.6 8.2 57 389-450 88-144 (147)
85 3efg_A Protein SLYX homolog; x 22.3 1.5E+02 0.0053 24.3 5.6 44 603-646 16-60 (78)
86 1fmh_B General control protein 21.7 97 0.0033 20.9 3.4 28 603-630 3-30 (33)
87 3jrs_A PYL1, putative uncharac 21.6 5.5E+02 0.019 24.8 12.7 118 278-416 51-168 (208)
88 2ocy_A RAB guanine nucleotide 20.8 58 0.002 30.5 3.0 39 604-642 111-149 (154)
89 2doh_C Fragment, plasminogen-b 20.3 71 0.0024 21.7 2.5 11 623-633 12-22 (30)
90 3rt2_A Abscisic acid receptor 20.3 5.4E+02 0.019 24.2 13.8 93 280-388 26-119 (183)
91 2wuj_A Septum site-determining 20.3 96 0.0033 23.9 3.7 51 583-643 5-55 (57)
No 1
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Probab=92.69 E-value=1.4 Score=40.78 Aligned_cols=97 Identities=18% Similarity=0.187 Sum_probs=64.1
Q ss_pred CCCCCeee-eEEEEEEee----cceeceEEEEecceEEEEeccCCceeEEEEeccccccccccccccccCC-eEEEEec-
Q 006377 76 LPSEEVLV-QDFNCAFQE----SILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPN-AIEIFAA- 148 (648)
Q Consensus 76 LP~~E~LI-~~f~CaL~r----~i~~~GrLYIS~~~iCF~S~ifg~~tk~vIp~~dI~~I~K~kt~~i~pn-aI~I~T~- 148 (648)
|..+|.++ ..-.+.|.- .-...|++|+|.+.|||...-- ....+.|||.+|..++...+. +..+ =|.+...
T Consensus 13 L~~~E~il~~~~~V~Ly~g~~k~~~k~G~l~LTshRli~~d~~~-~~~s~~lpl~~v~~~e~~~~~-f~~s~Ki~l~l~~ 90 (140)
T 2hth_B 13 LEINETLVIQQRGVRIYDGEEKIKFDAGTLLLSTHRLIWRDQKN-HECCMAILLSQIVFIEEQAAG-IGKSAKIVVHLHP 90 (140)
T ss_dssp CCTTCCEEEEEEEEEEEETTCSSCCCCEEEEEESSEEEEEETTC-CSCCEEEEGGGEEEEEEECCT-TSSCCEEEEEECC
T ss_pred cCCCceEEEEcCCEEEecCCCCCCCcCCEEEEecCEEEEecCCC-CceEEEEEhHHeeeeeeeccc-cccCceEEEEecC
Confidence 55566554 445566652 2457899999999999986533 357799999999999998753 3222 1222211
Q ss_pred -------------CeEEEEeccCC--HHHHHHHHHHHHHhc
Q 006377 149 -------------GKKYFFASFLS--RDEAFKLITDGWLQH 174 (648)
Q Consensus 149 -------------~~k~~F~SF~~--RD~a~~lI~~~w~~~ 174 (648)
+..++=.+|.+ .|+-+..|.+.+++.
T Consensus 91 ~~~~~~~gp~~~s~~~~~kLsFr~Gg~~eF~~~L~~al~~k 131 (140)
T 2hth_B 91 APPNKEPGPFQSSKNSYIKLSFKEHGQIEFYRRLSEEMTQR 131 (140)
T ss_dssp CCCCSSSCCCSTTSCCEEEEEETTSCHHHHHHHHHHHHHHC
T ss_pred CCccCCCCCcccccCcEEEEEEcCCCChHHHHHHHHHHHHh
Confidence 23455556654 688888888887764
No 2
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A
Probab=90.99 E-value=2 Score=49.11 Aligned_cols=98 Identities=10% Similarity=-0.066 Sum_probs=63.4
Q ss_pred hCCCCCCCeeeeEEEEEE-ee--cceeceEEEEecceEEEEeccCCceeEEEEecccccccccccc---ccccCCeEEEE
Q 006377 73 LFRLPSEEVLVQDFNCAF-QE--SILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKT---AGIFPNAIEIF 146 (648)
Q Consensus 73 lF~LP~~E~LI~~f~CaL-~r--~i~~~GrLYIS~~~iCF~S~ifg~~tk~vIp~~dI~~I~K~kt---~~i~pnaI~I~ 146 (648)
-|.|=++|.++..-.-.+ .. .-.+.|.||||+.+|.|.+.--.....+-||+.-|..|+|..+ .+-.+..|.|.
T Consensus 78 ~~~LLPGE~v~~~~~~V~~~~p~~~~~~GtL~lTnyrLiF~~~~~~~~~~~~IPL~~I~~Iekv~g~s~~g~~~~~l~I~ 157 (657)
T 1lw3_A 78 EPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLETV 157 (657)
T ss_dssp CCCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEEEEEEECCTTCCSTTCSEEEEE
T ss_pred CCccCCCeeEEEEeCCEEEecCCCCceeEEEEEECCEEEEEecCCCcceEEEecccceEEEEecCCCcccCCCCceEEEE
Confidence 466556888875432222 11 2358899999999999998532224467899999999999642 12235689999
Q ss_pred ecCeEEEEeccC----CHHHHHHHHHHH
Q 006377 147 AAGKKYFFASFL----SRDEAFKLITDG 170 (648)
Q Consensus 147 T~~~k~~F~SF~----~RD~a~~lI~~~ 170 (648)
.++.+.+=-.|. ++...|..|.++
T Consensus 158 CKDfR~~~f~f~~~~~~~~~v~~~L~~~ 185 (657)
T 1lw3_A 158 CKDIRNLRFAHKPEGRTRRSIFENLMKY 185 (657)
T ss_dssp ETTTEEEEEECCGGGCCHHHHHHHHHHH
T ss_pred ecCCcEEEEEeCCccchHHHHHHHHHHH
Confidence 998543322343 244566666553
No 3
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=90.78 E-value=0.97 Score=42.13 Aligned_cols=96 Identities=7% Similarity=-0.040 Sum_probs=61.4
Q ss_pred CCCCeee-eEEEEEEee-----cceeceEEEEecceEEEEeccCCceeEEEEeccccccccccccccccCCeEEEE--e-
Q 006377 77 PSEEVLV-QDFNCAFQE-----SILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIF--A- 147 (648)
Q Consensus 77 P~~E~LI-~~f~CaL~r-----~i~~~GrLYIS~~~iCF~S~ifg~~tk~vIp~~dI~~I~K~kt~~i~pnaI~I~--T- 147 (648)
.++|.++ ..=...|.- .-...|++|+|.+.|||-..--.....+.+||.+|.+++...+. +..+ +.|. .
T Consensus 26 ~~~E~il~~~d~V~Ly~g~~k~~~~k~G~lyLTshRIIyv~~~~~~~~SfslPL~~v~~~e~~~~~-fg~s-~Ki~l~~~ 103 (145)
T 2cay_A 26 REGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYVNYSSGF-LTRS-PRLILFFK 103 (145)
T ss_dssp CTTCCEEEEEEEEEEEETTEECTTCSSEEEEEESSEEEEEESSCHHHHCEEEEGGGEEEEEEECSS-SSSS-CEEEEEES
T ss_pred CCCCEEEEEcCCcceecCCCCCcCCCccEEEEEcCeEEEecCCCCcceEEEeEhHheeeeeEEcCc-cccC-ceEEEEec
Confidence 3455544 333555542 23568999999999999865332236789999999999997653 3344 3443 1
Q ss_pred ---cC---eEEEEeccCCHHHHHHHHHHHHHhcC
Q 006377 148 ---AG---KKYFFASFLSRDEAFKLITDGWLQHG 175 (648)
Q Consensus 148 ---~~---~k~~F~SF~~RD~a~~lI~~~w~~~~ 175 (648)
.+ -|..|.+=. .++-+..+.+.|++..
T Consensus 104 p~~~~~~~~KLsFk~GG-a~eF~~~l~~al~~~~ 136 (145)
T 2cay_A 104 DPSSSTEFVQLSFRKSD-GVLFSQATERALENIL 136 (145)
T ss_dssp SCSSTTCCEEEEESSSC-CHHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEEEEcCCC-chHHHHHHHHHHHHHH
Confidence 22 344444433 3778888888887643
No 4
>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A
Probab=90.71 E-value=10 Score=35.03 Aligned_cols=149 Identities=12% Similarity=0.040 Sum_probs=82.4
Q ss_pred eeeeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCCCceeEEEEEEeeeeeccCCceeeeeEEEEEE
Q 006377 283 KVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFR 362 (648)
Q Consensus 283 ~v~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~rg~tdi~~tpW~~~~~g~~~R~isY~~pl~~p~GPK~t~c~etQki~ 362 (648)
...+.++++|++++|.++-.|-. +.+.+++......++.-+.|. .+..|.++|. + |.+... -++++.
T Consensus 6 ~~~e~~i~a~a~kvw~~~~~d~~-~~~pk~~~~i~s~~i~eGdgg----~Gsir~~~~~-~-----g~~~~~--~kErl~ 72 (158)
T 2qim_A 6 FQDEYTSTIAPAKLYKALVTDAD-IIIPKAVETIQSVEIVEGNGG----PGTIKKLTFI-E-----GGESKY--VLHKIE 72 (158)
T ss_dssp EEEEEEESSCHHHHHHHHTTTHH-HHHHHHCTTEEEEEEEESSSS----TTCEEEEEEE-E-----TTEEEE--EEEEEE
T ss_pred EEEEEEecCCHHHHHHHHhcCcc-chhhhHHhhCcEEEEEecCCC----CCeEEEEEEc-C-----CCccee--EEEEEE
Confidence 44678899999999999643432 344555533333344456662 2678999886 2 333222 356666
Q ss_pred EeeCCeEEEEEeEeeCCCCCCC-ceEEEEEEEEEecCCCCCCceEEEEEEEEEEeeeccchhhhhcchHHHHHHHHHHHH
Q 006377 363 VYRNSHLVIETSQEVHDVPYGD-YFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWI 441 (648)
Q Consensus 363 ~~~~~~~VIetst~t~DVPYGD-~F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~~~~wv 441 (648)
..++....+.-+..-.|+ ..+ +=.....|.+.+.+. ++|.+.. .++|.+..- ........+..++.+..+.
T Consensus 73 ~~D~~~~~~~y~iieG~~-~~~~~~~~~~~~~v~~~~~---~gs~v~w--t~~y~~~~~--~~~~~~~~~~~~~~~~~~~ 144 (158)
T 2qim_A 73 AIDEANLGYNYSIVGGVG-LPDTIEKISFETKLVEGAN---GGSIGKV--TIKIETKGD--AQPNEEEGKAAKARGDAFF 144 (158)
T ss_dssp EEEGGGTEEEEEEEEESS-CCCSEEEEEEEEEEEECST---TCEEEEE--EEEEEESTT--CCCCHHHHHHHHHHHHHHH
T ss_pred EEecCCCEEEEEEEeccC-CccceEEEEEEEEEEecCC---CCEEEEE--EEEEEECCC--CCCCHHHHHHHHHHHHHHH
Confidence 554443222222222232 222 333556777877642 2676554 455654321 1111223334578888889
Q ss_pred HHHHHHHhhcc
Q 006377 442 GMAHDVLKQKN 452 (648)
Q Consensus 442 ~~~~e~l~~~~ 452 (648)
+.+.++|.+++
T Consensus 145 k~ie~yll~~p 155 (158)
T 2qim_A 145 KAIESYLSAHP 155 (158)
T ss_dssp HHHHHHHHHCS
T ss_pred HHHHHHHHhCc
Confidence 99999987764
No 5
>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A
Probab=90.58 E-value=6.4 Score=36.31 Aligned_cols=149 Identities=9% Similarity=0.001 Sum_probs=82.0
Q ss_pred eeeeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCCCceeEEEEEEeeeeeccCCceeeeeEEEEEE
Q 006377 283 KVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFR 362 (648)
Q Consensus 283 ~v~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~rg~tdi~~tpW~~~~~g~~~R~isY~~pl~~p~GPK~t~c~etQki~ 362 (648)
...+.+.++|++++|.++-.|-. +.+.+++......++.-+.|. .+..|.++|. . |.+... -++++.
T Consensus 5 ~~~e~~i~a~a~kvw~~~~~d~~-~~~pk~~~~i~s~~i~eG~g~----~Gsir~~~~~---~---G~~~~~--~kErl~ 71 (155)
T 1icx_A 5 FENEQSSTVAPAKLYKALTKDSD-EIVPKVIEPIQSVEIVEGNGG----PGTIKKIIAI---H---DGHTSF--VLHKLD 71 (155)
T ss_dssp EEEEEEESSCHHHHHHHHTTTHH-HHHHHHSTTEEEEEEEESSSS----TTCEEEEEEE---S---SSSEEE--EEEEEE
T ss_pred EEEEEEecCCHHHHHHHHhcCcc-hhcchhhhhccEEEEEecCCC----CCeEEEEEEe---c---CCccee--EEEEEE
Confidence 34578899999999999653432 344555533333344456662 2678999885 1 333222 356776
Q ss_pred EeeCCeEEEEEeEeeCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEeeeccchhhhhcchHHHHHHHHHHHHH
Q 006377 363 VYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIG 442 (648)
Q Consensus 363 ~~~~~~~VIetst~t~DVPYGD~F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~~~~wv~ 442 (648)
..++....+.-+..-.|+.-..+=.....|.+.+.+. ++|.+... ++|.+..-. ......+..++.+..+.+
T Consensus 72 ~~D~~~~~~~y~iieGd~~~~~~~~~~~~~~v~~~~~---~gs~v~w~--~~y~~~~~~---~~~~~~~~~~~~~~~~~k 143 (155)
T 1icx_A 72 AIDEANLTYNYSIIGGEGLDESLEKISYESKILPGPD---GGSIGKIN--VKFHTKGDV---LSETVRDQAKFKGLGLFK 143 (155)
T ss_dssp EEEGGGTEEEEEEEEETTSCTTEEEEEEEEEEEECGG---GCEEEEEE--EEEEESSSS---CCHHHHTTHHHHHHHHHH
T ss_pred EEeccCCEEEEEEEecCCCccceEEEEEEEEEEecCC---CCEEEEEE--EEEEECCCC---CCHHHHHHHHHHHHHHHH
Confidence 5555433333322222322112333556677777542 25765544 455543211 222222234788888889
Q ss_pred HHHHHHhhcc
Q 006377 443 MAHDVLKQKN 452 (648)
Q Consensus 443 ~~~e~l~~~~ 452 (648)
.+.++|.+++
T Consensus 144 ~ie~yll~~p 153 (155)
T 1icx_A 144 AIEGYVLAHP 153 (155)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHHhCC
Confidence 9999987764
No 6
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*
Probab=90.37 E-value=2.6 Score=47.06 Aligned_cols=96 Identities=10% Similarity=-0.044 Sum_probs=61.6
Q ss_pred CCCCCCCeeeeEEEEEE-ee--cceeceEEEEecceEEEEeccCCceeEEEEecccccccccccc---ccccCCeEEEEe
Q 006377 74 FRLPSEEVLVQDFNCAF-QE--SILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKT---AGIFPNAIEIFA 147 (648)
Q Consensus 74 F~LP~~E~LI~~f~CaL-~r--~i~~~GrLYIS~~~iCF~S~ifg~~tk~vIp~~dI~~I~K~kt---~~i~pnaI~I~T 147 (648)
|.|=++|.++..-.-.+ .. .-...|.||||+.+|.|.+.--.....+-||+.-|..|+|..+ .+-.+..|.|..
T Consensus 7 ~~lLpGE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLiF~~~~~~~~~~~~iPL~~I~~vek~~~~s~~~~~~~~l~I~C 86 (528)
T 1zsq_A 7 PPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLETVC 86 (528)
T ss_dssp CCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEEEEEEECCTTCCSTTCSEEEEEE
T ss_pred CccCCCCeEEEecCCEEEeCCCCCceeEEEEEECCEEEEEccCCCccEEEEeeccceEEEEEcCCCCcCCCCCceEEEEc
Confidence 55556777775432222 22 2368999999999999998532234568899999999999653 122356899999
Q ss_pred cCeEEEEeccC----CHHHHHHHHHH
Q 006377 148 AGKKYFFASFL----SRDEAFKLITD 169 (648)
Q Consensus 148 ~~~k~~F~SF~----~RD~a~~lI~~ 169 (648)
++-+.+=-.|. ++.+.|..|.+
T Consensus 87 KDfr~~~f~f~~~~~~~~~v~~~L~~ 112 (528)
T 1zsq_A 87 KDIRNLRFAHKPEGRTRRSIFENLMK 112 (528)
T ss_dssp TTTEEEEEECCGGGCCHHHHHHHHHH
T ss_pred cCCeEEEEEecCchHHHHHHHHHHHH
Confidence 98543322343 24455555554
No 7
>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A
Probab=89.59 E-value=11 Score=35.14 Aligned_cols=150 Identities=11% Similarity=0.112 Sum_probs=82.8
Q ss_pred eeeeEEecCHHHHHhhhccCCchhHHHHHHH-HcCCcceeeccccccCCCceeEEEEEEeeeeeccCCceeeeeEEEEEE
Q 006377 284 VAETNFQMKVEDFYSLFFSDDTVNFIESFHR-KCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFR 362 (648)
Q Consensus 284 v~e~~fpisv~~~F~lLFgD~s~~F~~~f~~-~rg~tdi~~tpW~~~~~g~~~R~isY~~pl~~p~GPK~t~c~etQki~ 362 (648)
-.+.+.++|++++|.++..|-. ..+.+++- .....++.-+.|. .+..|.++|. -|.+.. .-++++.
T Consensus 6 ~~ei~i~a~a~kvw~~~~~d~~-~l~pk~~P~~i~s~e~~eGdgg----~Gsir~~~~~------~g~~~~--~~kErl~ 72 (159)
T 4a8u_A 6 ETEATSVIPAARLFKAFILDGD-NLFPKVAPQAISSVENIEGNGG----PGTIKKISFP------EGFPFK--YVKDRVD 72 (159)
T ss_dssp EEEEEESSCHHHHHHHHTTTHH-HHHHHHCTTTCCEEEEEECSSS----TTCEEEEECC------TTSSCS--EEEEEEE
T ss_pred EEEEEecCCHHHHHHHHhcCcc-ccchhhCchhccEEEEEcCCCC----CceEEEEEEe------cCCCcc--EEEEEEE
Confidence 4567889999999999866532 33344432 2233344456663 3678988875 133322 3467887
Q ss_pred EeeCCeEEEEEeEeeCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEeeeccchhhhhcchHHHHHHHHHHHHH
Q 006377 363 VYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIG 442 (648)
Q Consensus 363 ~~~~~~~VIetst~t~DVPYGD~F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~~~~wv~ 442 (648)
..++....+.-+..-.|++-..+=.....+.+.+.+. ++|.++ ..+.|.+..= ..+.-..++..++.+..+.+
T Consensus 73 ~iD~~~~~~~y~iiegd~l~~~~~~y~~ti~v~p~~~---ggs~v~--wt~~y~~~~~--~~~~~~~~k~~~~~~~~~~k 145 (159)
T 4a8u_A 73 EVDHTNFKYSYSVIEGGPVGDTLEKISNEIKIVATPN---GGSILK--INNKYHTKGD--HEVKAEQIKASKEMGETLLR 145 (159)
T ss_dssp EEETTTTEEEEEEEEETTCBTTEEEEEEEEEEEECTT---SCEEEE--EEEEEEESSS--CCC-CHHHHHHHHHHHHHHH
T ss_pred EEccccCEEEEEEeeCCCCccceEEEEEEEEEEECCC---CceEEE--EEEEEEECCC--CcCCHHHHHHHHHHHHHHHH
Confidence 7765543333332223433111222344566666542 367654 4455554321 12223334556788888889
Q ss_pred HHHHHHhhccC
Q 006377 443 MAHDVLKQKNL 453 (648)
Q Consensus 443 ~~~e~l~~~~~ 453 (648)
.+..||-+++.
T Consensus 146 ~ie~yll~np~ 156 (159)
T 4a8u_A 146 AVESYLLAHSD 156 (159)
T ss_dssp HHHHHHHHCTT
T ss_pred HHHHHHhhChh
Confidence 99999877653
No 8
>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A*
Probab=89.18 E-value=3.8 Score=40.04 Aligned_cols=160 Identities=13% Similarity=0.115 Sum_probs=80.8
Q ss_pred eeeeeEEecCHHHHHhhhcc-CCchhHHHHHHH-HcCCcceeeccccccCCCceeEEEEEEeeeeeccCCceeeeeEEEE
Q 006377 283 KVAETNFQMKVEDFYSLFFS-DDTVNFIESFHR-KCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQK 360 (648)
Q Consensus 283 ~v~e~~fpisv~~~F~lLFg-D~s~~F~~~f~~-~rg~tdi~~tpW~~~~~g~~~R~isY~~pl~~p~GPK~t~c~etQk 360 (648)
...+.++++|++++|.++.+ |.. .++.+++- .....++. +.|. .+..|.++|. . |++. ...+++
T Consensus 31 ~~~eveI~apa~kvW~~~v~~df~-~l~pk~~P~~i~s~e~~-GdGg----~GsIR~lt~~---~---G~~~--~~vkEr 96 (201)
T 2vq5_A 31 IHHELEVAASADDIWTVYSWPGLA-KHLPDLLPGAFEKLEII-GDGG----VGTILDMTFV---P---GEFP--HEYKEK 96 (201)
T ss_dssp EEEEEEESSCHHHHHHHHTCGGGG-GGHHHHSTTSCSEEEEE-SSSS----TTCEEEEECC---T---TCSS--CEEEEE
T ss_pred EEEEEEecCCHHHHHhhhhcCCcc-cchhhhCcccceEEEEe-cCCC----CCeEEEEEec---C---CCcc--cEEEEE
Confidence 44677889999999999776 543 45555553 22333555 7663 3678988875 1 3222 223577
Q ss_pred EEEeeCCeEEEEEeEeeC---CCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEeeeccc-hhhhhcchHHHHHHH
Q 006377 361 FRVYRNSHLVIETSQEVH---DVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVW-KGKIVQSTLEECRDV 436 (648)
Q Consensus 361 i~~~~~~~~VIetst~t~---DVPYGD~F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~-K~~IEkst~~g~ke~ 436 (648)
+...++....+.-+..=. +.||.+ |. ....+.+.+. ++|. |.+.++|.+..-. ... +.. ..++.
T Consensus 97 le~iDde~~~~sYsiieGd~l~~~~~~-y~--~tikv~p~~d---ggs~--vkWt~~ye~~~~~~~~~-e~~---~~~~~ 164 (201)
T 2vq5_A 97 FILVDNEHRLKKVQMIEGGYLDLGVTY-YM--DTIHVVPTGK---DSCV--IKSSTEYHVKPEFVKIV-EPL---ITTGP 164 (201)
T ss_dssp EEEEETTTTEEEEEEEEEGGGGTTEEE-EE--EEEEEEEEET---TEEE--EEEEEEEEECGGGHHHH-TTT---CCSHH
T ss_pred EEEEchhhCEEEEEEEecCccccceeE-EE--EEEEEEECCC---CCeE--EEEEEEEEECCCCCCCC-hhH---HHHHH
Confidence 776666433322222212 235544 23 3344444432 3676 4555666654322 111 111 34677
Q ss_pred HHHHHHHHHHHHhhccCCCCCCcccccCCCCCCccccc
Q 006377 437 YAMWIGMAHDVLKQKNLEKPEGWIVVDSEGGPAYSTVQ 474 (648)
Q Consensus 437 ~~~wv~~~~e~l~~~~~ek~~~~~~~~~~~~~~~~~~~ 474 (648)
+..+.+.+.++|.+++.+...- +..|.++++|
T Consensus 165 ~~~~~KaiE~yLlanp~~~~~~------~~~~~~~~~~ 196 (201)
T 2vq5_A 165 LAAMADAISKLVLEHKSKSNSD------EIEAAIITVH 196 (201)
T ss_dssp HHHHHHHHHHHHHSCCCC--------------------
T ss_pred HHHHHHHHHHHHHhCccccccc------eeeeeeEEee
Confidence 8888888999998776433322 4456677765
No 9
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=88.92 E-value=5.2 Score=38.95 Aligned_cols=80 Identities=16% Similarity=0.095 Sum_probs=49.7
Q ss_pred eCCeEEEEEeEeeCCCCCC-CceEEE---EEEEEEecCCCCCCceEEEEEEEEEEeeeccchhhhhcchHHHHHHHHHHH
Q 006377 365 RNSHLVIETSQEVHDVPYG-DYFRVE---GLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMW 440 (648)
Q Consensus 365 ~~~~~VIetst~t~DVPYG-D~F~Ve---~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~~~~w 440 (648)
++.++++..+...+.+|-. ++=+++ +.|+|++...+ +++|+|.....+...+ .+=+..+.+.+...+-..+..+
T Consensus 142 ~~~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~-~~~t~vt~~~~~Dp~G-~iP~~l~n~~~~~~~~~~~~~L 219 (229)
T 1em2_A 142 RDRYLSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSASN-PRVCTFVWILNTDLKG-RLPRYLIHQSLAATMFEFAFHL 219 (229)
T ss_dssp SSEEEEEEEECCCTTSCCCTTSEECEECSEEEEEEECSSC-TTCEEEEEEECEECCS-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEecccCCCCCCCCCCEeeeecccEEEEEecCCC-CCcEEEEEEEEECCCC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 3444455666666777744 444444 57999986533 3489999999998865 3445666665555665555555
Q ss_pred HHHHHH
Q 006377 441 IGMAHD 446 (648)
Q Consensus 441 v~~~~e 446 (648)
-+.+++
T Consensus 220 r~~~~~ 225 (229)
T 1em2_A 220 RQRISE 225 (229)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 10
>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A
Probab=88.75 E-value=7.3 Score=36.09 Aligned_cols=149 Identities=13% Similarity=0.181 Sum_probs=81.3
Q ss_pred eeeeeEEecCHHHHHhhhccCCchhHHHHHHH-HcCCcceeeccccccCCCceeEEEEEEeeeeeccCCceeeeeEEEEE
Q 006377 283 KVAETNFQMKVEDFYSLFFSDDTVNFIESFHR-KCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKF 361 (648)
Q Consensus 283 ~v~e~~fpisv~~~F~lLFgD~s~~F~~~f~~-~rg~tdi~~tpW~~~~~g~~~R~isY~~pl~~p~GPK~t~c~etQki 361 (648)
...+.++++|++++|.++-.|-. +.+.+++- .....++.-+.|. .+..|.++|. + |.+... -++++
T Consensus 5 ~~~e~~i~ap~~~vw~~~~~d~~-~~~pk~~P~~i~s~~~~eGdgg----~Gsvr~~~~~-~-----G~~~~~--~kErl 71 (159)
T 1e09_A 5 YESEFTSEIPPPRLFKAFVLDAD-NLVPKIAPQAIKHSEILEGDGG----PGTIKKITFG-E-----GSQYGY--VKHKI 71 (159)
T ss_dssp EEEEEEESSCHHHHHHHHTTTHH-HHHHHHCTTTEEEEEEEESSSS----TTCEEEEEEC-C-----SSSCEE--EEEEE
T ss_pred EEEEEEecCCHHHHHHHHhcCcc-ccchhhChhhccEEEEEeCCCC----CceEEEEEec-C-----CCCceE--EEEEE
Confidence 34678899999999999643421 34455542 2223333445552 3678989884 2 332222 35677
Q ss_pred EEeeCCeEEEEEeEeeCCCCCCCce-EEEEEEEEEecCCCCCCceEEEEEEEEEEeeeccchhhhhcchHHHHHHHHHHH
Q 006377 362 RVYRNSHLVIETSQEVHDVPYGDYF-RVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMW 440 (648)
Q Consensus 362 ~~~~~~~~VIetst~t~DVPYGD~F-~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~~~~w 440 (648)
...++....+.-+..-.|+ .++.| .....|.+.+.++ ++|.+.. .++|.+..- ..+.....+..++.+..+
T Consensus 72 ~~~D~~~~~~~y~iieG~~-~~~~~~~~~~~~~v~~~~~---~gs~v~w--t~~y~~~~~--~~~~~~~~~~~~~~~~~~ 143 (159)
T 1e09_A 72 DSIDKENYSYSYTLIEGDA-LGDTLEKISYETKLVASPS---GGSIIKS--TSHYHTKGN--VEIKEEHVKAGKEKASNL 143 (159)
T ss_dssp EEEETTTTEEEEEECCCTT-TGGGEEEEEEEEEECCCTT---SSEEEEE--EEEEEECSS--CCCCHHHHHHHHHHHHHH
T ss_pred EEEcCCCCEEEEEEEeccc-CcccceEEEEEEEEEecCC---CCEEEEE--EEEEEECCC--CCCCHHHHHHHHHHHHHH
Confidence 7665554444433332333 22212 2455666766432 3676554 455554321 111222233558888888
Q ss_pred HHHHHHHHhhcc
Q 006377 441 IGMAHDVLKQKN 452 (648)
Q Consensus 441 v~~~~e~l~~~~ 452 (648)
.+.+.++|.+++
T Consensus 144 ~k~ie~yll~~~ 155 (159)
T 1e09_A 144 FKLIETYLKGHP 155 (159)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHHhCh
Confidence 999999987764
No 11
>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A*
Probab=88.56 E-value=11 Score=34.93 Aligned_cols=150 Identities=13% Similarity=0.074 Sum_probs=82.0
Q ss_pred eeeeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCCCceeEEEEEEeeeeeccCCceeeeeEEEEEE
Q 006377 283 KVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFR 362 (648)
Q Consensus 283 ~v~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~rg~tdi~~tpW~~~~~g~~~R~isY~~pl~~p~GPK~t~c~etQki~ 362 (648)
...+.+.++|++++|.++-.|-. +.+.+++......++.-+.|. .+..|.++|. + |.+... -++++.
T Consensus 5 ~~~e~~i~a~a~kvw~~~~~d~~-~~~pk~~~~i~s~~i~eG~g~----~Gsir~~~~~-~-----G~~~~~--~kErl~ 71 (157)
T 1tw0_A 5 FRDETSSSVAPAKLYKALTKDSD-TIAQKIDGPIQSIELVEGNGG----VGTIKKITAN-E-----GDKTSF--VLQKVD 71 (157)
T ss_dssp EEEEEEESSCHHHHHHHHHHTGG-GGGGGSCSSEEEEEEEESSSS----TTCEEEEEEE-E-----TTEEEE--EEEEEE
T ss_pred EEEEEEecCCHHHHHHHHhcCcc-hhhhhHHhhccEEEEEeCCCC----CCeEEEEEee-C-----CCccce--EEEEEE
Confidence 34578899999999999653432 233334322222333445552 2678999886 2 333222 357776
Q ss_pred EeeCCeEEEEEeEeeCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEeeeccchhhhhcchHHHHHHHHHHHHH
Q 006377 363 VYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIG 442 (648)
Q Consensus 363 ~~~~~~~VIetst~t~DVPYGD~F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~~~~wv~ 442 (648)
..++....+.-+..-.|+.-..+=.....|.+.+.+. ++|.+.. .++|.+..- ........+..++.+..+.+
T Consensus 72 ~~D~~~~~~~y~iieGd~~~~~~~~~~~~~~v~~~~~---~gs~v~w--~~~y~~~~~--~~~~~~~~~~~~~~~~~~~k 144 (157)
T 1tw0_A 72 AIDEANLGYDYSIVGGTGLPESLEKLSFETKVVAGSG---GGSISKV--TLKFHTKGD--APLSDAVRDDALAKGAGFFK 144 (157)
T ss_dssp EEETTTTEEEEEEEECTTSCTTEEEEEEEEEEEECSS---SSEEEEE--EEEEEESTT--CCCCHHHHHHHHHHHHHHHH
T ss_pred EEeccCCEEEEEEEecCCCccceEEEEEEEEEEecCC---CCEEEEE--EEEEEECCC--CCCCHHHHHHHHHHHHHHHH
Confidence 6655443333333323332112334556777877542 2676554 445554321 11112233345788889999
Q ss_pred HHHHHHhhcc
Q 006377 443 MAHDVLKQKN 452 (648)
Q Consensus 443 ~~~e~l~~~~ 452 (648)
.+.++|.+++
T Consensus 145 ~ie~yll~~p 154 (157)
T 1tw0_A 145 AIEGYVLANP 154 (157)
T ss_dssp HHHHHHHHCG
T ss_pred HHHHHHHhCc
Confidence 9999987764
No 12
>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A*
Probab=88.44 E-value=7.2 Score=36.12 Aligned_cols=142 Identities=8% Similarity=0.114 Sum_probs=75.6
Q ss_pred eeeeeEEecCHHHHHhhhccCCchhHHHHHHH-HcCCcceeeccccccCCCceeEEEEEEeeeeeccC-CceeeeeEEEE
Q 006377 283 KVAETNFQMKVEDFYSLFFSDDTVNFIESFHR-KCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFG-AKFGSCKETQK 360 (648)
Q Consensus 283 ~v~e~~fpisv~~~F~lLFgD~s~~F~~~f~~-~rg~tdi~~tpW~~~~~g~~~R~isY~~pl~~p~G-PK~t~c~etQk 360 (648)
...+.++++|++++|.++.+|-. .++.+++- ....-++.-+.|. .+..|.++|.- | ++ . ..+++
T Consensus 5 ~~~e~~i~a~a~kvw~~~v~d~~-~l~pk~~P~~i~s~~~~eGdgg----~Gsvr~~~~~~------g~~~-~--~~kEr 70 (155)
T 2flh_A 5 FNTQTELSVRLEALWAVLSKDFI-TVVPKVLPHIVKDVQLIEGDGG----VGTILIFNFLP------EVSP-S--YQREE 70 (155)
T ss_dssp EEEEEEESSCHHHHHHHHHTSCT-THHHHHCTTTEEEEEEEECSSS----TTCEEEEEECT------TSSS-C--EEEEE
T ss_pred EEEEEEecCCHHHHHHHHhcccc-cccchhccccceEEEEEcCCCC----CCeEEEEEeeC------CCCC-c--EEEEE
Confidence 44678899999999999777754 45455542 1122233345552 36789888751 2 22 2 23577
Q ss_pred EEEeeCCeEEEEEeEeeCC---CCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEeeeccchhhhhcchHHHHH--H
Q 006377 361 FRVYRNSHLVIETSQEVHD---VPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECR--D 435 (648)
Q Consensus 361 i~~~~~~~~VIetst~t~D---VPYGD~F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~k--e 435 (648)
+...++....+.-+..-.| .||.+| ...+.+.+.++ ++|.+ ...++|.+..=..- -.+..+ +
T Consensus 71 l~~iD~~~~~~~y~iieg~~l~~~~~~~---~~~i~v~p~~~---ggs~v--~wt~~y~~~~~~~~-----~~~~~~~~~ 137 (155)
T 2flh_A 71 ITEFDESSHEIGLQVIEGGYLSQGLSYY---KTTFKLSEIEE---DKTLV--NVKISYDHDSDIEE-----KVTPTKTSQ 137 (155)
T ss_dssp EEEEETTTTEEEEEEEEEGGGGTTCSEE---EEEEEEEEEET---TEEEE--EEEEEEEC------------CCHHHHHH
T ss_pred EEEEeCCCCEEEEEEEeccccccCceEE---EEEEEEEECCC---CCEEE--EEEEEEEECCCCcc-----ChhHhhhHH
Confidence 7666554222222211122 366653 34455565532 36754 45566665431111 223455 7
Q ss_pred HHHHHHHHHHHHHhhc
Q 006377 436 VYAMWIGMAHDVLKQK 451 (648)
Q Consensus 436 ~~~~wv~~~~e~l~~~ 451 (648)
.+..+.+.+..+|.++
T Consensus 138 ~~~~~~k~ie~yll~~ 153 (155)
T 2flh_A 138 STLMYLRRLERYLSNG 153 (155)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhhC
Confidence 7888888888888654
No 13
>2vjg_A Major allergen DAU C 1; major carrot allergen, pathogenesis-related protein, plant defense; HET: P4C PG4 PGE; 2.70A {Daucus carota} PDB: 2wql_A* 2bk0_A
Probab=88.22 E-value=16 Score=33.82 Aligned_cols=146 Identities=13% Similarity=0.066 Sum_probs=78.3
Q ss_pred eeeeeEEecCHHHHHhhhccCCchhHHHHHHH-HcCCcceeeccccccCCCceeEEEEEEeeeeeccCCceeeeeEEEEE
Q 006377 283 KVAETNFQMKVEDFYSLFFSDDTVNFIESFHR-KCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKF 361 (648)
Q Consensus 283 ~v~e~~fpisv~~~F~lLFgD~s~~F~~~f~~-~rg~tdi~~tpW~~~~~g~~~R~isY~~pl~~p~GPK~t~c~etQki 361 (648)
.-.+.+.++|++++|.+|+.|-. ..+.+++- .....++ -+.+ ..+..|.++|. -|.+.. ...+++
T Consensus 6 ~~~ei~i~a~a~kvw~~~v~d~~-~l~pk~~P~~v~s~e~-eGdg----~~Gsir~~~~~------~g~~~~--~~kErl 71 (154)
T 2vjg_A 6 HSLEITSSVSAEKIFSGIVLDVD-TVIPKAATGAYKSVEV-KGDG----GAGTVRIITLP------EGSPIT--TMTVRT 71 (154)
T ss_dssp EEEEEEESSCHHHHHHHHTTTHH-HHHHHHSTTTCSEEEE-ESSS----STTCEEEEECC------TTCSCC--EEEEEE
T ss_pred EEEEEEecCCHHHHHHhhhCCcc-ccchhhccCceeEEEE-eCCC----CCceEEEEEec------CCCCce--EEEEEE
Confidence 34678899999999999887742 33334432 1222233 3332 23678988873 133322 336777
Q ss_pred EEeeCCeEEEEEeEeeCCCCCCC-ceEEEEEEEEEecCCCCCCceEEEEEEEEEEeeeccchhhhhcchHHHHHHHHHHH
Q 006377 362 RVYRNSHLVIETSQEVHDVPYGD-YFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMW 440 (648)
Q Consensus 362 ~~~~~~~~VIetst~t~DVPYGD-~F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~~~~w 440 (648)
...++....+.-+..-.|++ .+ +=.....+.+.+.+. ++|.++ ....|.+..= ..+.-..++..++.+..+
T Consensus 72 ~~iD~~~~~~~y~iiegd~l-~~~~~~~~~ti~v~p~~~---ggs~v~--wt~~y~~~~~--~~~~~~~~~~~~~~~~~~ 143 (154)
T 2vjg_A 72 DAVNKEALSYDSTVIDGDIL-LGFIESIETHMVVVPTAD---GGSITK--TTAIFHTKGD--AVVPEENIKFADAQNTAL 143 (154)
T ss_dssp EEEETTTTEEEEEEEESGGG-TTTEEEEEEEEEEEECTT---SCEEEE--EEEEEEESTT--CCCCHHHHHHHHHHHHHH
T ss_pred EEEeccCCEEEEEEEecCCC-ccceEEEEEEEEEEECCC---CcEEEE--EEEEEEECCC--CCCCHHHHHHHHHHHHHH
Confidence 76665433333332223432 21 223444566666532 367644 4455554321 122222345567888888
Q ss_pred HHHHHHHHhh
Q 006377 441 IGMAHDVLKQ 450 (648)
Q Consensus 441 v~~~~e~l~~ 450 (648)
.+.+..||-+
T Consensus 144 ~k~ie~ylla 153 (154)
T 2vjg_A 144 FKAIEAYLIA 153 (154)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 8888888754
No 14
>1t77_A Lipopolysaccharide-responsive and beige-like anchor protein, CDC4-like protein; PH-beach domains, vesicle trafficking, signal transduction; 2.40A {Homo sapiens} SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A
Probab=87.64 E-value=0.86 Score=49.39 Aligned_cols=80 Identities=15% Similarity=0.171 Sum_probs=58.3
Q ss_pred eeeEEEEEEee-cceeceEEEEecceEEEEecc----CC----------ceeEEEEeccccccccccccccccCCeEEEE
Q 006377 82 LVQDFNCAFQE-SILLQGHMYLFVHFICFYSNI----FG----------FETKKIIPFYEVTAVRRAKTAGIFPNAIEIF 146 (648)
Q Consensus 82 LI~~f~CaL~r-~i~~~GrLYIS~~~iCF~S~i----fg----------~~tk~vIp~~dI~~I~K~kt~~i~pnaI~I~ 146 (648)
++-++.|.+.. .....|+|+||...|+|...- |. ......+++.+|..|-+..- ..-++||+|.
T Consensus 3 v~~~~~~~~i~p~~~~~G~l~it~~~iyF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~~Rry-ll~~~alEif 81 (414)
T 1t77_A 3 VSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRY-LLQNTALEIF 81 (414)
T ss_dssp CSEEEEEEEECSSCEEEEEEEECSSEEEEEECTTCHHHHHSCHHHHHHCCCTTCEEEGGGEEEEEEEEE-TTEEEEEEEE
T ss_pred EEEEEEEEEEeeecceeeEEEEeCCEEEEEeCCCcccccccccchhccccCcceEecchheeeeeeeec-cCcceeEEEE
Confidence 45577898875 567899999999999998521 11 00113689999999998754 3468999999
Q ss_pred ecCeEEEEeccCCHHH
Q 006377 147 AAGKKYFFASFLSRDE 162 (648)
Q Consensus 147 T~~~k~~F~SF~~RD~ 162 (648)
+.+.+-+|-.|.+.+.
T Consensus 82 ~~~g~s~~l~F~~~~~ 97 (414)
T 1t77_A 82 MANRVAVMFNFPDPAT 97 (414)
T ss_dssp ETTSCEEEEECSSHHH
T ss_pred EcCCcEEEEEcCCHHH
Confidence 9876556667887553
No 15
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=86.86 E-value=4 Score=39.60 Aligned_cols=147 Identities=9% Similarity=-0.033 Sum_probs=74.0
Q ss_pred eeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCC-CceeEEEEEEeeeeeccCCcee-eeeEEEEEE
Q 006377 285 AETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYE-FGYSRDLSFQHPIKVYFGAKFG-SCKETQKFR 362 (648)
Q Consensus 285 ~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~rg~tdi~~tpW~~~~~-g~~~R~isY~~pl~~p~GPK~t-~c~etQki~ 362 (648)
.+.+++++++++|++|+.|-. . +...|-.+.....-+. +..+. +.|..-...+.+|-+. .........
T Consensus 59 ~~~~v~~~~~~v~~~l~~d~~--~-------r~~Wd~~~~~~~vle~~~~~t~-I~y~~~~~~~~~~v~~RDfv~~r~~~ 128 (221)
T 3p0l_A 59 LEVVVDQPMERLYEELVERME--A-------MGEWNPNVKEIKVLQKIGKDTF-ITHELAAEAAGNLVGPRDFVSVRCAK 128 (221)
T ss_dssp EEEEESSCHHHHHHHHTTTGG--G-------TTTSCTTCSEEEEEEECSSSEE-EEEEEECC---CCSCCEEEEEEEEEE
T ss_pred EEEEEcCCHHHHHHHHHhccc--h-------hhhcCcchheEEEEEecCCCeE-EEEEeeccccCCccCCceEEEEEEEE
Confidence 457789999999999986532 1 1111111111111000 11233 4443221111222221 111112222
Q ss_pred EeeCCeEEEEEeEeeCCCCC-CCceEEE---EEEEEEecCCCCCCceEEEEEEEEEEeeeccchhhhhcchHHHHHHHHH
Q 006377 363 VYRNSHLVIETSQEVHDVPY-GDYFRVE---GLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYA 438 (648)
Q Consensus 363 ~~~~~~~VIetst~t~DVPY-GD~F~Ve---~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~~~ 438 (648)
..++.++++..+...+++|- .++-+++ +.|.|++.+.++ ++|+|.....+...+ .+=+..+.+.+...+-+.++
T Consensus 129 ~~~~~~vi~~~Sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~-~~t~vt~~~~~Dp~G-~iP~~lvn~~~~~~~~~~~~ 206 (221)
T 3p0l_A 129 RRGSTCVLAGMATDFGNMPEQKGVIRAEHGPTCMVLHPLAGSP-SKTKLTWLLSIDLKG-WLPKSIINQVLSQTQVDFAN 206 (221)
T ss_dssp ECSSCEEECCEECCCTTSCCCTTSEECEECSCEEEEEEETTEE-EEEEEEEEECEECCS-SCCHHHHHHHHHHHHHHHHH
T ss_pred EcCCeEEEEEEeccCCCCCCCCCeEEEeccceEEEEEECCCCC-CcEEEEEEEEecCCC-CCCHHHHHHHHHHHHHHHHH
Confidence 23333445555555677775 4444554 569999876322 279999999998854 35566666655566655555
Q ss_pred HHHHH
Q 006377 439 MWIGM 443 (648)
Q Consensus 439 ~wv~~ 443 (648)
.+-+.
T Consensus 207 ~Lr~~ 211 (221)
T 3p0l_A 207 HLRKR 211 (221)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 16
>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=86.69 E-value=6.9 Score=36.68 Aligned_cols=147 Identities=10% Similarity=0.116 Sum_probs=81.4
Q ss_pred cceeeeeEEecCHHHHHhhhccCCchhHHHHHHH-HcCCcceeeccccccCCCceeEEEEEEeeeeeccCCceeeeeEEE
Q 006377 281 YTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHR-KCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQ 359 (648)
Q Consensus 281 ~~~v~e~~fpisv~~~F~lLFgD~s~~F~~~f~~-~rg~tdi~~tpW~~~~~g~~~R~isY~~pl~~p~GPK~t~c~etQ 359 (648)
.+...+.++++|++++|.++-+|.. .+.+++- .....++.-+.|. ..+..|.++|.. |++... -++
T Consensus 17 ~k~~~ev~i~apa~kvw~~~~~d~~--~lpk~~P~~i~s~~~~eGd~g---g~Gsir~~~~~~------gg~~~~--~kE 83 (166)
T 2i9y_A 17 GKLETDVEIKASADKFHHMFAGKPH--HVSKASPGNIQGCDLHEGDWG---TVGSIVFWNYVH------DGEAKV--AKE 83 (166)
T ss_dssp EEEEEEEEESSCHHHHHGGGSSCSS--CCCCSCSSCCSSCCCCSCCSC---STTCCCEEEEEE------TTEEEE--EEE
T ss_pred cEEEEEEEecCCHHHHHHHHhcccc--cccccccccceEEEEEcCCCC---CCCeEEEEEEec------CCCceE--EEE
Confidence 4566788999999999999876632 1122221 1122233334552 236789888852 333222 357
Q ss_pred EEEEeeCCeEEEEEeEeeCCCCCCCce-EEEEEEEEEecCCCCCCceEEEEEEEEEEeeeccchhhhhcchHHHHHHHHH
Q 006377 360 KFRVYRNSHLVIETSQEVHDVPYGDYF-RVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYA 438 (648)
Q Consensus 360 ki~~~~~~~~VIetst~t~DVPYGD~F-~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~~~ 438 (648)
++...++....+.-+..-.|+ .+.| .....|.+.+.++ + ++|.+. ..++|.+..- -+..- ..+++.+.
T Consensus 84 rl~~iD~~~~~~~y~iieGd~--~~~~~~~~~ti~v~p~~~-g-~gs~v~--wt~~ye~~~~---~~~~p--~~~~~~~~ 152 (166)
T 2i9y_A 84 RIEAVEPDKNLITFRVIEGDL--MKEYKSFLLTIQVTPKPG-G-PGSIVH--WHLEYEKISE---EVAHP--ETLLQFCV 152 (166)
T ss_dssp EEEEEETTTTEEEEEECCTTG--GGTEEEEEEEEEEEEEEE-T-TEEEEE--EEEEEEESST---TTCCT--HHHHHHHH
T ss_pred EEEEEeccCcEEEEEEEeCCC--CCCeeEEEEEEEEEECCC-C-CCcEEE--EEEEEEECCC---CCCCH--HHHHHHHH
Confidence 777665554444433332344 2323 4566777777532 1 267654 4456654331 11111 35667888
Q ss_pred HHHHHHHHHHhhc
Q 006377 439 MWIGMAHDVLKQK 451 (648)
Q Consensus 439 ~wv~~~~e~l~~~ 451 (648)
.+.+.+.++|.++
T Consensus 153 ~~~k~ie~~l~~~ 165 (166)
T 2i9y_A 153 EVSKEIDEHLLAE 165 (166)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhhC
Confidence 8888888888765
No 17
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=86.32 E-value=4.7 Score=39.24 Aligned_cols=144 Identities=9% Similarity=0.065 Sum_probs=73.1
Q ss_pred eeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCCCceeEEEEEEeeeeec--cCCceeeeeEEEEEE
Q 006377 285 AETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVY--FGAKFGSCKETQKFR 362 (648)
Q Consensus 285 ~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~rg~tdi~~tpW~~~~~g~~~R~isY~~pl~~p--~GPK~t~c~etQki~ 362 (648)
...++++|++++|++++..... .++ +.++.-...-..- +..+..+.|..+-..+ +.|.. .......+
T Consensus 71 ~~~~v~~~~~~v~~~l~d~~~r---~~W-----d~~~~~~~vle~i-d~~~~I~y~~~~~~~~~~v~~RD--fv~~r~~~ 139 (224)
T 1jss_A 71 AQGVMDDVVNNVIDHIRPGPWR---LDW-----DRLMTSLDVLEHF-EENCCVMRYTTAGQLLNIISPRE--FVDFSYTV 139 (224)
T ss_dssp EEEEESSCHHHHHHHHSSSTTH---HHH-----CSSEEEEEEEEEC-STTEEEEEEEECCBTTTTBCCEE--EEEEEEEE
T ss_pred EEEEEeCCHHHHHHHHhCcccc---ccc-----ccceeeEEEEEEc-CCCeEEEEEEcccccCCCCCCCe--EEEEEEEE
Confidence 5678899999999999754321 111 2222222111111 1223333333322111 22221 11122233
Q ss_pred EeeCCeEEEEEeEeeCCCCCCCceEEE---EEEEEEecCCCCCCceEEEEEEEEEEeeeccchhhhhcchHHHHHHHHHH
Q 006377 363 VYRNSHLVIETSQEVHDVPYGDYFRVE---GLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAM 439 (648)
Q Consensus 363 ~~~~~~~VIetst~t~DVPYGD~F~Ve---~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~~~~ 439 (648)
..++..+++..+..-++.| .++-+++ +.|+|++...++ ++|+|...+.+...+ .+=+..+.+.....+.+.+..
T Consensus 140 ~~~~~~vi~~~Sv~hp~~~-~g~VR~~~~~~g~~i~p~~~~~-~~t~vt~~~~~Dp~G-~iP~~lvn~~~~~~~~~~~~~ 216 (224)
T 1jss_A 140 GYEEGLLSCGVSVEWSETR-PEFVRGYNHPCGWFCVPLKDSP-SQSLLTGYIQTDLRG-MIPQSAVDTAMASTLANFYSD 216 (224)
T ss_dssp EETTEEEEEEEECCCCCCC-TTSEECEECSEEEEEEEETTEE-EEEEEEEEECEECCS-CCCHHHHHHHHHHHHHHHHHH
T ss_pred EcCCeEEEEEeeeecCCCC-CCCEEEEecccEEEEEEcCCCC-CceEEEEEEEeCCCC-CccHHHHHHHHHHhHHHHHHH
Confidence 3344444444444445655 3666665 669999975322 389999999998854 333555555544555555544
Q ss_pred HHH
Q 006377 440 WIG 442 (648)
Q Consensus 440 wv~ 442 (648)
+.+
T Consensus 217 Lr~ 219 (224)
T 1jss_A 217 LRK 219 (224)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 18
>3rws_A MTN13 protein; zeatin, cytokinin, hormone, lucerne, nodulin, NODU plant protein; HET: ZEA; 1.85A {Medicago truncatula}
Probab=84.74 E-value=19 Score=34.01 Aligned_cols=146 Identities=16% Similarity=0.163 Sum_probs=82.0
Q ss_pred ceeeeeEEecCHHHHHhhhccCCchhHHHHHHH-HcCCcceeeccccccCCCceeEEEEEEeeeeeccCCceeeeeEEEE
Q 006377 282 TKVAETNFQMKVEDFYSLFFSDDTVNFIESFHR-KCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQK 360 (648)
Q Consensus 282 ~~v~e~~fpisv~~~F~lLFgD~s~~F~~~f~~-~rg~tdi~~tpW~~~~~g~~~R~isY~~pl~~p~GPK~t~c~etQk 360 (648)
+.-.+.+.++|++++|.++..|-. ..+.+++- .....++.-+.+ ..+..|.++|. |+ .. ...++
T Consensus 10 ~~~~ei~i~apa~kvw~~~v~d~~-~l~pk~~P~~v~s~e~~eGdg----g~Gsir~~t~~-------g~-~~--~~kEr 74 (168)
T 3rws_A 10 TSESEYVSSLSAEKLYRGIVEDGN-IIYPKALPRFIEKAETLEGDG----GPGTIKKLTFV-------GD-FG--STKQH 74 (168)
T ss_dssp EEEEEEEESSCHHHHHHHHHTSHH-HHHHHHSTTTEEEEEEEESSS----STTCEEEEEES-------SS-SC--EEEEE
T ss_pred EEEEEEEecCCHHHHHHHHhcCcc-ccchhhCccccceEEEeeCCC----CCCeEEEEEEc-------CC-Ce--EEEEE
Confidence 445778899999999999756532 33333332 112223333432 23678988886 33 11 23578
Q ss_pred EEEeeCCeEEEEEeEeeCCC----CCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEeeeccchh--hhhcchHHHHH
Q 006377 361 FRVYRNSHLVIETSQEVHDV----PYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKG--KIVQSTLEECR 434 (648)
Q Consensus 361 i~~~~~~~~VIetst~t~DV----PYGD~F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~--~IEkst~~g~k 434 (648)
+...++....+.-+..-.|+ ||.+ ....+.+.+.+. ++|.++ +.+.|.+.. + .+.-...+..+
T Consensus 75 l~~iD~~~~~~sY~iiegd~l~~~p~~~---y~~ti~v~p~~~---ggs~v~--wt~~y~~~~---~d~~~~~e~~k~~~ 143 (168)
T 3rws_A 75 IDMVDRENCAYTYSVYEGIALSDQPLEK---IVFEFKLVPTPE---EGCIVK--STTKYYTKG---DDIELSKDYLEAGI 143 (168)
T ss_dssp EEEEETTTTEEEEEECSSCCBTTBCEEE---EEEEEEEEECTT---SCEEEE--EEEEEEECS---SSCCCCHHHHHHHH
T ss_pred EEEEcccCCEEEEEEEccCcccCcCceE---EEEEEEEEECCC---CceEEE--EEEEEEECC---CccCCCHHHHHHHH
Confidence 77776554333333332344 5443 334566666542 367654 445555422 2 12222345578
Q ss_pred HHHHHHHHHHHHHHhhccC
Q 006377 435 DVYAMWIGMAHDVLKQKNL 453 (648)
Q Consensus 435 e~~~~wv~~~~e~l~~~~~ 453 (648)
+.+..+.+.+..||-+++.
T Consensus 144 ~~~~~~~k~ie~yllanp~ 162 (168)
T 3rws_A 144 ERFEGFTKAVESFLLANPD 162 (168)
T ss_dssp HHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHhChH
Confidence 8888889999999887653
No 19
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=82.47 E-value=11 Score=36.48 Aligned_cols=78 Identities=12% Similarity=-0.036 Sum_probs=46.9
Q ss_pred eCCeEE-EEEeEeeCCCCCC-CceEEEE---EEEEEecCCCCCCceEEEEEEEEEEeeeccchhhhhcchHHHHHHHHHH
Q 006377 365 RNSHLV-IETSQEVHDVPYG-DYFRVEG---LWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAM 439 (648)
Q Consensus 365 ~~~~~V-Ietst~t~DVPYG-D~F~Ve~---R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~~~~ 439 (648)
+++.|+ +..+...+++|-. ++-+++. .|+|.+...+ +++|+|.....+...++ +=+..+.+.+..++...++.
T Consensus 144 ~~g~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~-~~~t~vt~~~~~Dp~G~-iP~~lvn~~~~~~~~~~~~~ 221 (231)
T 2r55_A 144 EDGTISSNATHVEHPLCPPKPGFVRGFNHPCGCFCEPLPGE-PTKTNLVTFFHTDLSGY-LPQNVVDSFFPRSMTRFYAN 221 (231)
T ss_dssp TTSCEEEEEEECCCTTSCCCTTCEEEEECSEEEEEEECC---CCCEEEEEEECEECCSS-CCHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEeccCCCCCCCCCCEEEEEEeeEEEEEEeCCC-CCcEEEEEEEEeCCCCC-ccHHHHHHHHhHhHHHHHHH
Confidence 444454 5666666777743 5555554 5899987522 24899999999988553 33566665555555554444
Q ss_pred HHHHH
Q 006377 440 WIGMA 444 (648)
Q Consensus 440 wv~~~ 444 (648)
+-+.+
T Consensus 222 Lr~~~ 226 (231)
T 2r55_A 222 LQKAV 226 (231)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 20
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}
Probab=81.71 E-value=2.9 Score=46.56 Aligned_cols=72 Identities=13% Similarity=0.201 Sum_probs=47.6
Q ss_pred cceeceEEEEecceEEEEeccCCceeEEEEeccccccccccccccccCCeEEEEecCeE-EEEeccCCHH---HHHHHHH
Q 006377 93 SILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKK-YFFASFLSRD---EAFKLIT 168 (648)
Q Consensus 93 ~i~~~GrLYIS~~~iCF~S~ifg~~tk~vIp~~dI~~I~K~kt~~i~pnaI~I~T~~~k-~~F~SF~~RD---~a~~lI~ 168 (648)
.-...|.||||+.+|-|.+. ....+-||+.-|..|+|.+... --..|.|..++-+ +.| .|..-+ +.|+.|.
T Consensus 22 ~~~~~GtL~lTn~~LiF~~~---~~~e~wi~~~~I~~VeK~~~~~-~~~~l~I~CKDfr~~~f-~f~~~~~~~~v~~sL~ 96 (512)
T 2yf0_A 22 NKSLTGTLYLTATHLLFIDS---HQKETWILHHHIASVEKLALTT-SGCPLVIQCKNFRTVHF-IVPRERDCHDIYNSLL 96 (512)
T ss_dssp --CCEEEEEECSSEEEEEES---SSCEEEEEGGGEEEEEECCCBT-TBEEEEEEETTSCEEEE-EESCHHHHHHHHHHHH
T ss_pred CCceeEEEEEECCEEEEeCC---CCCceEecccceeEEEEecCCC-CCceEEEEecCCcEEEE-EeCChHHHHHHHHHHH
Confidence 34678999999999999983 2345789999999999975421 1136899988743 333 344433 3444444
Q ss_pred H
Q 006377 169 D 169 (648)
Q Consensus 169 ~ 169 (648)
+
T Consensus 97 ~ 97 (512)
T 2yf0_A 97 Q 97 (512)
T ss_dssp H
T ss_pred h
Confidence 3
No 21
>2wql_A Major allergen DAU C 1; pathogenesis-related protein, plant defense; HET: P4C; 2.70A {Daucus carota} PDB: 2bk0_A
Probab=80.90 E-value=35 Score=31.57 Aligned_cols=145 Identities=14% Similarity=0.092 Sum_probs=79.0
Q ss_pred eeeEEecCHHHHHhhhccCCchhHHHHHHH-HcCCcceeeccccccCCCceeEEEEEEeeeeeccCCceeeeeEEEEEEE
Q 006377 285 AETNFQMKVEDFYSLFFSDDTVNFIESFHR-KCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRV 363 (648)
Q Consensus 285 ~e~~fpisv~~~F~lLFgD~s~~F~~~f~~-~rg~tdi~~tpW~~~~~g~~~R~isY~~pl~~p~GPK~t~c~etQki~~ 363 (648)
.|.+.++|+++||.+|..|.. +++.+.+- ..+..++ -+.| ..+..|.++|.. |.+.. ..++++..
T Consensus 8 ~E~~~~v~a~kl~ka~v~d~~-~l~Pk~~P~~iks~~v-eGdg----~~Gsir~~t~~~------g~~~~--~~kErle~ 73 (154)
T 2wql_A 8 LEITSSVSAEKIFSGIVLDVD-TVIPKAATGAYKSVEV-KGDG----GAGTVRIITLPE------GSPIT--TMTVRTDA 73 (154)
T ss_dssp EEEEESSCHHHHHHHHTTTHH-HHHHHHSTTTCSEEEE-ESSS----STTCEEEEECCT------TCSCC--EEEEEEEE
T ss_pred EEEEecCCHHHHHHHHhhccc-ccchhhcccceeEEEE-ECCC----CCCeEEEEEEcC------CCCce--EEEEEEEE
Confidence 567789999999999888753 44444432 1122222 2222 236789888732 22222 33688887
Q ss_pred eeCCeEEEEEeEeeCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEeeeccchhhhhcchHHHHHHHHHHHHHH
Q 006377 364 YRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGM 443 (648)
Q Consensus 364 ~~~~~~VIetst~t~DVPYGD~F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~~~~wv~~ 443 (648)
.++..+.+.-+..-.|+.-..+=.+.....+.+.+. ++|.+.. .+.|.+..= ..+.-...++.++.+..+.+.
T Consensus 74 iD~~~~~~~y~iieGd~l~~~~~~~~~~ikv~p~~~---ggsvvk~--t~~Y~~~~~--~~~~ee~~~~~~~~~~~~~Ka 146 (154)
T 2wql_A 74 VNKEALSYDSTVIDGDILLGFIESIETHMVVVPTAD---GGSITKT--TAIFHTKGD--AVVPEENIKFADAQNTALFKA 146 (154)
T ss_dssp EETTTTEEEEEEEESGGGTTTEEEEEEEEEEEECTT---SCEEEEE--EEEEEESTT--CCCCHHHHHHHHHHHHHHHHH
T ss_pred EehhhCEEEEEEEeccccccceEEEEEEEEEeeCCC---CcEEEEE--EEEEEECCC--CCCCHHHHHHHHHHHHhHHHH
Confidence 777655555544445543222223344555666542 3676554 456665431 122222334455656667777
Q ss_pred HHHHHhh
Q 006377 444 AHDVLKQ 450 (648)
Q Consensus 444 ~~e~l~~ 450 (648)
+..||-.
T Consensus 147 iEayLla 153 (154)
T 2wql_A 147 IEAYLIA 153 (154)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 7777754
No 22
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=77.53 E-value=3 Score=33.28 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=33.9
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006377 603 IPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKD 640 (648)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (648)
+.=|+.++..|+.|-..-+++++.|+.|..|||.-|.+
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45588999999999999999999999999999987754
No 23
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=77.33 E-value=32 Score=31.97 Aligned_cols=74 Identities=11% Similarity=0.126 Sum_probs=44.9
Q ss_pred CCeEEEEEeEeeCCCCCCCc----eEEEEEEEEEecCCCCCCceEEEEEEEEEEeeeccchhhhhcchHHHHHHHHHHHH
Q 006377 366 NSHLVIETSQEVHDVPYGDY----FRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWI 441 (648)
Q Consensus 366 ~~~~VIetst~t~DVPYGD~----F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~~~~wv 441 (648)
+..++|......+.+|-..- ....+.|+|++ ++ ++|+|.....+.+. ..+-+..+.+.+...+-..++.+-
T Consensus 100 ~g~~~i~~~~~~~~~P~~~~~VR~~~~~~~~~i~p-~~---~~t~vt~~~~~dp~-G~iP~~lvn~~~~~~~~~~l~~L~ 174 (189)
T 3qsz_A 100 DGAITVRVEAVPDYLPLRKGKVRIPRAKGQWTLVP-DA---DGVDVTYQMHASPG-GSIPSWLANQTVVETPFGTLKALR 174 (189)
T ss_dssp TSCEEEEEEECTTSSCCCTTSEECCCEEEEEEEEE-CS---SSEEEEEEEEECSC-SSSCHHHHHHTTTHHHHHHHHHHH
T ss_pred CCeEEEEEEcCCCccCCCCCeEEeeEeeEEEEEEE-CC---CeEEEEEEEEeCCC-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34555554444455664322 23458899999 53 38999999999985 345566666655556555555544
Q ss_pred HHH
Q 006377 442 GMA 444 (648)
Q Consensus 442 ~~~ 444 (648)
+.+
T Consensus 175 k~~ 177 (189)
T 3qsz_A 175 SHL 177 (189)
T ss_dssp HHH
T ss_pred HHh
Confidence 433
No 24
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=76.92 E-value=3.4 Score=32.58 Aligned_cols=38 Identities=18% Similarity=0.149 Sum_probs=33.6
Q ss_pred cchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006377 601 ESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQL 638 (648)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (648)
+-+.=||.++..|..|-..-.+.++.|+.|.++||.+|
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566899999999999999999999999999999876
No 25
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10
Probab=73.38 E-value=48 Score=29.16 Aligned_cols=139 Identities=12% Similarity=0.095 Sum_probs=70.7
Q ss_pred ceeeeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCCCceeEEEEEEeeeeeccCCceeeeeEEEEE
Q 006377 282 TKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKF 361 (648)
Q Consensus 282 ~~v~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~rg~tdi~~tpW~~~~~g~~~R~isY~~pl~~p~GPK~t~c~etQki 361 (648)
..-.+.+++.|++++|.++ .|- ..+..++- ++. .+. .. ++ .+.+. +...+||-.......-++
T Consensus 14 ~i~~~~~i~ap~e~Vw~~l-~D~--~~~~~w~p--~~~-----~~~-~~-~~---~~~~~--~~~~~g~~~~~~~~~~~~ 76 (157)
T 2ns9_A 14 RYEGSFEVSKTPEEVFEFL-TDP--KRFSRAFP--GFK-----SVE-VE-DG---SFTIE--LRLSLGPLRGDARVRASF 76 (157)
T ss_dssp EEEEEEEESSCHHHHHHHH-TCH--HHHGGGST--TEE-----EEE-EE-TT---EEEEE--EEEESSSSEEEEEEEEEE
T ss_pred EEeeEEEEcCCHHHHHHHH-cCH--HHHHhhCC--Cce-----EEE-EC-CC---EEEEE--EEEEEcceeEEEEEEEEE
Confidence 3456688999999999996 442 22222221 111 111 11 11 12232 333345532222222233
Q ss_pred EE-eeCCeEEEEEeEeeCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEeee--ccchhhhhcchHHHHHHHHH
Q 006377 362 RV-YRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKK--TVWKGKIVQSTLEECRDVYA 438 (648)
Q Consensus 362 ~~-~~~~~~VIetst~t~DVPYGD~F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~Ks--T~~K~~IEkst~~g~ke~~~ 438 (648)
.. ..+..+++..... + .+.-|.....|.++..+ ++|+|.....+.+... .+.+..+.+ -.+..+.
T Consensus 77 ~~~~~~~~i~~~~~~~--~--~~~~~~~~~~~~l~~~~----~gT~v~~~~~~~~~g~l~~~~~~~~~~----~~~~~~~ 144 (157)
T 2ns9_A 77 EDLEKPSKATVKGSGR--G--AGSTLDFTLRFAVEPSG----GGSRVSWVFEGNVGGLAASMGGRVLDS----LARRMIN 144 (157)
T ss_dssp EEEETTTEEEEEEEEE--C--SSEEEEEEEEEEEEEET----TEEEEEEEEEEEEEEGGGGSCHHHHHH----HHHHHHH
T ss_pred EecCCCcEEEEEEEec--C--CCccEEEEEEEEEEeCC----CcEEEEEEEEEEECcCHHHhhHHHHHH----HHHHHHH
Confidence 22 2445555543221 2 12346778899998864 3899999998888642 133333322 3344555
Q ss_pred HHHHHHHHHHh
Q 006377 439 MWIGMAHDVLK 449 (648)
Q Consensus 439 ~wv~~~~e~l~ 449 (648)
.+.+-+++.++
T Consensus 145 ~~~~~lk~~~e 155 (157)
T 2ns9_A 145 DVISGVKRELG 155 (157)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 55556666554
No 26
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=71.47 E-value=56 Score=29.12 Aligned_cols=145 Identities=12% Similarity=0.124 Sum_probs=72.9
Q ss_pred eeeeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCCCceeEEEEEEeeeeeccCCceeeeeEEEEE-
Q 006377 283 KVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKF- 361 (648)
Q Consensus 283 ~v~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~rg~tdi~~tpW~~~~~g~~~R~isY~~pl~~p~GPK~t~c~etQki- 361 (648)
.-.+.+++.|++++|.++ .|- .-+..++- ++.++.. ...+. |...+...+|+-.......-++
T Consensus 5 i~~~~~i~ap~e~Vw~~l-~D~--e~~~~w~p--~~~~~~~-----~~~~~------~~~~~~~~~g~~~~~~~~~~~~~ 68 (162)
T 2pcs_A 5 GNGSIELKGTVEEVWSKL-MDP--SILSKCIM--GCKSLEL-----IGEDK------YKADLQIGIAAVKGKYDAIIEVT 68 (162)
T ss_dssp EEEEEEEESCHHHHHHHH-TCH--HHHHHHST--TEEEEEE-----EETTE------EEEEEEECCGGGCEEEEEEEEEE
T ss_pred EeeEEEecCCHHHHHHHh-cCH--HHHHhhCC--CceEeEE-----eCCCe------EEEEEEEEeeeEEEEEEEEEEEE
Confidence 345678999999999996 442 33344431 2222211 11111 2222222334422222111122
Q ss_pred EEeeCCeEEEEEeEeeCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEeeec--cchhhhhcchHHHHHHHHHH
Q 006377 362 RVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKT--VWKGKIVQSTLEECRDVYAM 439 (648)
Q Consensus 362 ~~~~~~~~VIetst~t~DVPYGD~F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT--~~K~~IEkst~~g~ke~~~~ 439 (648)
+......+++.-...- + +..+.....|.++.... ++|+|.....+.+...- ++..++.+ -.+.....
T Consensus 69 ~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~l~~~~~---~gT~v~~~~~~~~~g~l~~~~~~l~~~----~~~~~~~~ 137 (162)
T 2pcs_A 69 DIKPPYHYKLLVNGEG-G---PGFVNAEGVIDLTPIND---ECTQLTYTYSAEVGGKVAAIGQRMLGG----VAKLLISD 137 (162)
T ss_dssp EEETTTEEEEEEEEEE-T---TEEEEEEEEEEEEESSS---SEEEEEEEEEEEEESGGGGGCHHHHHH----HHHHHHHH
T ss_pred ecCCCcEEEEEEEecC-C---CccEEEEEEEEEEecCC---CcEEEEEEEEEEECCCHHHhhHHHHHH----HHHHHHHH
Confidence 2233456665543221 1 33445788899987432 37999999998885421 23333322 23455666
Q ss_pred HHHHHHHHHhhccCC
Q 006377 440 WIGMAHDVLKQKNLE 454 (648)
Q Consensus 440 wv~~~~e~l~~~~~e 454 (648)
+.+.+++.+++...|
T Consensus 138 ~~~~lk~~~e~~~~~ 152 (162)
T 2pcs_A 138 FFKKIQKEIAKSKQE 152 (162)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHhcccCcc
Confidence 677777777764443
No 27
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=70.05 E-value=52 Score=31.03 Aligned_cols=144 Identities=4% Similarity=-0.057 Sum_probs=71.5
Q ss_pred eeeeEEe-cCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCCCceeEEEEEEeeeeeccCCceeeeeEEEEEE
Q 006377 284 VAETNFQ-MKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFR 362 (648)
Q Consensus 284 v~e~~fp-isv~~~F~lLFgD~s~~F~~~f~~~rg~tdi~~tpW~~~~~g~~~R~isY~~pl~~p~GPK~t~c~etQki~ 362 (648)
-...+++ ++++++|+++... ....++...+...++ + .. ++ ...+.+......|+.+.. -|. .....
T Consensus 55 k~~~~i~~~~~~~v~~~l~d~---~~r~~Wd~~~~~~~v-l---e~--~~--~~i~~~~~~~p~p~~~RD-~v~-~~~~~ 121 (214)
T 1ln1_A 55 KVFGVLEDCSPTLLADIYMDS---DYRKQWDQYVKELYE-Q---EC--NG--ETVVYWEVKYPFPMSNRD-YVY-LRQRR 121 (214)
T ss_dssp EEEEEETTSCHHHHHHHHHCH---HHHHHHCTTEEEEEE-E---EE--TT--EEEEEEEECCCTTSCCEE-EEE-EEEEE
T ss_pred EEEEEECCCCHHHHHHHHcCH---HHHHHHHHHHhhEEE-e---cc--CC--CEEEEEEEEcCCCCCCce-EEE-EEEEE
Confidence 4668895 9999999997532 233333322222222 1 11 22 223333322222332221 122 12222
Q ss_pred Eee-CC--eE-EEEEeEeeCCCCCCCce----EEEEEEEEEecCCCCCCceEEEEEEEEEEeeeccchhhhhcchHHHHH
Q 006377 363 VYR-NS--HL-VIETSQEVHDVPYGDYF----RVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECR 434 (648)
Q Consensus 363 ~~~-~~--~~-VIetst~t~DVPYGD~F----~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~k 434 (648)
..+ +. .| ++..+...+++|-...| .....|+|++.++ ++|++.....+...+ .+=+..+.+.+...+.
T Consensus 122 ~~~~~g~~~~~i~~~Sv~~p~~P~~~~~VR~~~~~~~~~i~p~~~---~~t~v~~~~~~Dp~G-~iP~~l~n~~~~~~~~ 197 (214)
T 1ln1_A 122 DLDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGK---KGSKVFMYYFDNPGG-QIPSWLINWAAKNGVP 197 (214)
T ss_dssp EECSTTCCEEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEECSS---SSEEEEEEEEECCSS-CCCHHHHHHHHHTHHH
T ss_pred ecccCCCeEEEEEEecccCCCCCCCCCcEEEEEEEEEEEEecCCC---CceEEEEEEEECCCC-cccHHHHHHHHHHHhH
Confidence 232 32 34 44556666778853333 2567799998753 489999999998853 3334444444444444
Q ss_pred HHHHHHHHHH
Q 006377 435 DVYAMWIGMA 444 (648)
Q Consensus 435 e~~~~wv~~~ 444 (648)
..++.+.+.+
T Consensus 198 ~~l~~l~k~~ 207 (214)
T 1ln1_A 198 NFLKDMARAC 207 (214)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 28
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=66.81 E-value=26 Score=34.45 Aligned_cols=78 Identities=8% Similarity=-0.006 Sum_probs=44.8
Q ss_pred eEEEEEeEeeCCCCCCCceE---EEEEEEEEecCCCCCCceEEEEEEEEEEeeeccchhhhhcchHHHHHHHHHHHHHHH
Q 006377 368 HLVIETSQEVHDVPYGDYFR---VEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMA 444 (648)
Q Consensus 368 ~~VIetst~t~DVPYGD~F~---Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~~~~wv~~~ 444 (648)
++++..+..-+++|-.++-+ ..+.|.|++.++ ++|+|.....+...++ +-.-+.+.....+- ..+..+
T Consensus 151 ~vi~~~Sv~h~~~P~~g~VR~~~~~~g~~i~P~~~---~~t~vt~~~~~Dp~G~--iP~~ln~~~~~~~~----~~l~~L 221 (237)
T 2pso_A 151 CTLVSLSVEHEEAQLLGGVRAVVMDSQYLIEPCGS---GKSRLTHICRIDLKGH--SPEWYSKGFGHLCA----AEVARI 221 (237)
T ss_dssp EEEEEEECCCTTCCCCSSEECCEEEEEEEEEECST---TCEEEEEEEEECCSSS--CTTTTTTHHHHHHH----HHHHHH
T ss_pred EEEEEEcccCCCCCCCCcEEEEEeccEEEEEECCC---CCEEEEEEEEeCCCCC--chHHHHHHHHHHHH----HHHHHH
Confidence 44455566666788664333 457899998753 4899999999998643 22333222222222 345556
Q ss_pred HHHHhhccCC
Q 006377 445 HDVLKQKNLE 454 (648)
Q Consensus 445 ~e~l~~~~~e 454 (648)
++.+++...+
T Consensus 222 R~~~~~~~~~ 231 (237)
T 2pso_A 222 RNSFQPLIAE 231 (237)
T ss_dssp HHTTSCC---
T ss_pred HHHHHhhcCC
Confidence 6666655443
No 29
>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}
Probab=65.77 E-value=79 Score=28.67 Aligned_cols=67 Identities=12% Similarity=0.149 Sum_probs=42.7
Q ss_pred CCc-eEEEEEEEEEecCCCCCCceEEEEEEEEEEeeeccchhhhhcchHHHHHHHHHHHHHHHHHHHhhccCC
Q 006377 383 GDY-FRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMAHDVLKQKNLE 454 (648)
Q Consensus 383 GD~-F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~~~~wv~~~~e~l~~~~~e 454 (648)
|+- -....+|.+++.++ ++|+|......+|.. .+.+++++-.-.-..+.++.+++...+.+++-+.|
T Consensus 88 g~~~~~l~g~w~f~p~~~---g~t~V~~~~~~e~~~--pl~~ll~~~~~~~~~~~~~~~v~af~~ra~~~~~~ 155 (161)
T 3p9v_A 88 GEGNGVVSGSWTLSAKGD---NATAVKFQTSAELTV--PLPSLLKLAISPVIKHEFNSLVDTYMANLKKAFLE 155 (161)
T ss_dssp TSTTEEEEEEEEEEESSS---SCEEEEEEEEEEEEE--CSCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CccceeEEEEEEEEECCC---CeEEEEEEEEEEEcC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444 25678999998753 379999998888852 23334443333345666666666666666666554
No 30
>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A*
Probab=62.28 E-value=1.1e+02 Score=29.21 Aligned_cols=150 Identities=13% Similarity=0.109 Sum_probs=74.6
Q ss_pred ccceeeeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeecccccc-CCCceeEEEEEEeeeeeccCCceeeeeEE
Q 006377 280 CYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRH-YEFGYSRDLSFQHPIKVYFGAKFGSCKET 358 (648)
Q Consensus 280 ~~~~v~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~rg~tdi~~tpW~~~-~~g~~~R~isY~~pl~~p~GPK~t~c~et 358 (648)
.....+..++++|+++||.++ +|-. . .+.+.. .|........ ...+..|.++|. . |.+... .+
T Consensus 34 ~~~~~~~~~I~Apa~~vW~lv-~df~-~-~~~w~p-----~I~s~e~~eGdg~vGsVR~~t~~---~---G~p~~~--vk 97 (190)
T 3kl1_A 34 TCTSLITQRIHAPASVVWPLI-RRFD-N-PERYKH-----FVKRCRLISGDGDVGSVREVTVI---S---GLPAST--ST 97 (190)
T ss_dssp EEEEEEEEEESSCHHHHHHHH-HCTT-C-GGGTCS-----SEEEEEEEESSSSTTCEEEEEEC---S---SSSCEE--EE
T ss_pred ceeEEEEEEecCCHHHHHHHH-hCCC-C-hhHccc-----ccCEEEEEcCCCCCCeEEEEEec---C---CCccce--EE
Confidence 345567788999999999985 3421 1 111111 1111111111 113678988884 1 322222 35
Q ss_pred EEEEEeeCCeEEEEEeEeeCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEeeeccchhhhhcchHHHHHHHHH
Q 006377 359 QKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYA 438 (648)
Q Consensus 359 Qki~~~~~~~~VIetst~t~DVPYGD~F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~~~ 438 (648)
+++..+++....+.-+..-.++|+.+|-.+..-.-+.... ++.++|.+.-.+... .-.+.=+..+..-+...|+
T Consensus 98 ErL~~iD~~~~~~sY~iieG~~~~~~Y~s~~~v~~~~~~~-~~~~gt~V~Ws~~f~-----~p~g~~~e~~~~~~~~~~~ 171 (190)
T 3kl1_A 98 ERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVNEFLNQD-SGKVYTVVLESYTVD-----IPEGNTEEDTKMFVDTVVK 171 (190)
T ss_dssp EEEEEEETTTTEEEEEEEEESSSCCSCEEEEEEEEEEC-C-CCCEEEEEEEEEEEE-----CCTTCCHHHHHHHHHHHHH
T ss_pred EEEEEEeccCCEEEEEEEecCCccccEEEEEEEEeccccc-CCCCcEEEEEEEEEE-----cCCCCCHHHHHHHHHHHHH
Confidence 6777666543222333333578888887776655554421 122367665554442 1112112223333455555
Q ss_pred HHHHHHHHHHhhc
Q 006377 439 MWIGMAHDVLKQK 451 (648)
Q Consensus 439 ~wv~~~~e~l~~~ 451 (648)
..++.+++.+++.
T Consensus 172 ~gL~~L~~~~e~~ 184 (190)
T 3kl1_A 172 LNLQKLGVAATSA 184 (190)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcc
Confidence 5555555555543
No 31
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=61.60 E-value=36 Score=30.03 Aligned_cols=93 Identities=15% Similarity=0.163 Sum_probs=59.4
Q ss_pred CCCCeeeeEEEEEEeecceeceEEEEecceEEEEeccCCceeEEEEeccccccccccccccccCCeEEEEec-CeE--EE
Q 006377 77 PSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAA-GKK--YF 153 (648)
Q Consensus 77 P~~E~LI~~f~CaL~r~i~~~GrLYIS~~~iCF~S~ifg~~tk~vIp~~dI~~I~K~kt~~i~pnaI~I~T~-~~k--~~ 153 (648)
..+|.|+......+.++- |.||++..+|---.+- +..-.+.+++.||...+-.+... --=-++|+-. +.. |.
T Consensus 4 ~~~~~ll~v~~v~yKK~d---GtL~l~~d~i~W~p~~-~~~~~vs~~~~~I~~qq~SP~~k-~KVqLqi~l~~~~~~~F~ 78 (108)
T 1pfj_A 4 SSEEVLLIVKKVRQKKQD---GALYLMAERIAWAPEG-KDRFTISHMYADIKCQKISPEGK-AKIQLQLVLHAGDTTNFH 78 (108)
T ss_dssp SSCCEEEEESCCBCSSCB---CEEEEETTEEEEECSS-SSSCSEEEETTTCCCEEECCSSS-SSCEEEEECSSSCEEEEE
T ss_pred cchheeEEehhheeecCC---ceEEEEcceEEEccCC-CCCceEEEehhhhhcceeCCCCC-ccEEEEEEEeCCCceEEE
Confidence 356777777777776543 9999999998866543 23456788999999865543211 0015677754 444 55
Q ss_pred EeccC----CHHHHHHHHHHHHHhc
Q 006377 154 FASFL----SRDEAFKLITDGWLQH 174 (648)
Q Consensus 154 F~SF~----~RD~a~~lI~~~w~~~ 174 (648)
|++-. .||..=++|.+++...
T Consensus 79 Ftn~~~a~~erd~VKd~L~~~l~~~ 103 (108)
T 1pfj_A 79 FSNESTAVKERDAVKDLLQQLLPKF 103 (108)
T ss_dssp CCCSSCTTHHHHHHHHHHHHHHHHH
T ss_pred EcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 55532 2667667777776654
No 32
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=60.20 E-value=10 Score=32.44 Aligned_cols=43 Identities=14% Similarity=0.205 Sum_probs=39.7
Q ss_pred CCccchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006377 598 RSAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKD 640 (648)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (648)
--.++++-|++|+..+.+++.-.|.+++.++.++.-||.+|..
T Consensus 62 ~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 62 AKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4468999999999999999999999999999999999998864
No 33
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=59.76 E-value=12 Score=32.50 Aligned_cols=44 Identities=14% Similarity=0.222 Sum_probs=40.6
Q ss_pred CCccchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 006377 598 RSAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDI 641 (648)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (648)
--.+++.-|++|+..+.+++.-.|.+++.++.++.-||.+|..+
T Consensus 67 ~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 67 TKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999998765
No 34
>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} SCOP: d.129.3.0
Probab=58.04 E-value=1.2e+02 Score=28.24 Aligned_cols=148 Identities=11% Similarity=0.050 Sum_probs=77.9
Q ss_pred ceeeeeEEecCHHHHHhhhccCCchhHHHHHHH-HcCCcceeeccccccCCCceeEEEEEEeeeeeccCCceeeeeEEEE
Q 006377 282 TKVAETNFQMKVEDFYSLFFSDDTVNFIESFHR-KCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQK 360 (648)
Q Consensus 282 ~~v~e~~fpisv~~~F~lLFgD~s~~F~~~f~~-~rg~tdi~~tpW~~~~~g~~~R~isY~~pl~~p~GPK~t~c~etQk 360 (648)
+.-.+.+.++|++++|.+|..|-. ..+.+++- .....++.-+. ...+..|.++|. -|.+. ..-+++
T Consensus 11 ~~~~ev~i~a~a~kvw~~~v~d~~-~l~pk~~P~~v~s~e~~eGd----g~~Gsir~~~~~------~g~~~--~~~kEr 77 (165)
T 3ie5_A 11 TIVKEEESPIAPHRLFKALVLERH-QVLVKAQPHVFKSGEIIEGD----GGVGTVTKITFV------DGHPL--TYMLHK 77 (165)
T ss_dssp EEEEEEEESSCHHHHHHHHTTTHH-HHHHHHCTTTEEEEEEEESS----SSTTCEEEEEEC------TTSSC--CEEEEE
T ss_pred EEEEEEEecCCHHHHHHHhcCCcc-ccchhhCCcccceEEEecCC----CCCCeEEEEEec------CCCCC--ceEEEE
Confidence 455778899999999999866632 22233331 11112222232 123678989883 13332 234678
Q ss_pred EEEeeCCeEEEEEeEeeCCC---CCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEeeeccchhhhhcchHHHHHHHH
Q 006377 361 FRVYRNSHLVIETSQEVHDV---PYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVY 437 (648)
Q Consensus 361 i~~~~~~~~VIetst~t~DV---PYGD~F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~~ 437 (648)
+...++....+.-+..-.|+ +|. +|....+.. . . .++|.++ ..++|.+..= ..+.-...+..++.+
T Consensus 78 l~~iD~~~~~~~Y~iieG~~l~~~~~-~y~~~i~v~-~-~----~ggs~vk--wt~~y~~~~~--~~~~~e~~k~~~~~~ 146 (165)
T 3ie5_A 78 FDEIDAANFYCKYTLFEGDVLRDNIE-KVVYEVKLE-A-V----GGGSKGK--ITVTYHPKPG--CTVNEEEVKIGEKKA 146 (165)
T ss_dssp EEEEEGGGTEEEEEEEEEGGGTTTEE-EEEEEEEEE-E-E----TTEEEEE--EEEEEEECTT--CCCCHHHHHHHHHHH
T ss_pred EEEEchhcCEEEEEEecCCCCccceE-EEEEEEEEE-e-C----CCceEEE--EEEEEEECCC--CCCCHHHHHHHHHHH
Confidence 77666543222222222232 243 344444443 2 2 1367644 4455554321 122223344567888
Q ss_pred HHHHHHHHHHHhhccC
Q 006377 438 AMWIGMAHDVLKQKNL 453 (648)
Q Consensus 438 ~~wv~~~~e~l~~~~~ 453 (648)
..+.+.+..+|-+++.
T Consensus 147 ~~~~K~ie~yllanp~ 162 (165)
T 3ie5_A 147 YEFYKQVEEYLAANPE 162 (165)
T ss_dssp HHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhChh
Confidence 8888999999877653
No 35
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.80 E-value=49 Score=27.58 Aligned_cols=62 Identities=13% Similarity=-0.006 Sum_probs=41.5
Q ss_pred EEecceEEEEeccCCceeEEEEeccccccccccccccccCCeEEEEecCeEEEEeccCCHHHH
Q 006377 101 YLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEA 163 (648)
Q Consensus 101 YIS~~~iCF~S~ifg~~tk~vIp~~dI~~I~K~kt~~i~pnaI~I~T~~~k~~F~SF~~RD~a 163 (648)
.+..+.|++|.+--....+-.|++.++..|+......--++.+.|.+.+..|+|. -.+.+++
T Consensus 30 vL~~~~L~yy~~~~~~~~~g~i~L~~~~~v~~~~~~~~~~~~F~i~~~~r~~~l~-a~s~~e~ 91 (115)
T 2dn6_A 30 VLKPNIISYYVSEDLKDKKGDILLDENCCVESLPDKDGKKCLFLVKCFDKTFEIS-ASDKKKK 91 (115)
T ss_dssp EECSSCEEEESSTTCSSEEEEECCCTTCEEEEECCCTTCCSEEEEECSSCEEEEE-CSSHHHH
T ss_pred EEECCEEEEeCCCCCcccCcEEEecCcEEEEECCCCCCCeeEEEEEeCCCEEEEE-cCCHHHH
Confidence 4466778888654334557789999988877653322346799999988888884 3444443
No 36
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=57.01 E-value=9 Score=31.82 Aligned_cols=34 Identities=12% Similarity=0.353 Sum_probs=27.3
Q ss_pred HhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006377 609 RMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 642 (648)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (648)
-|..|.++....++.++.|++|...|+.+|..|+
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3556677777778888999999999999988764
No 37
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=56.12 E-value=16 Score=30.90 Aligned_cols=52 Identities=23% Similarity=0.326 Sum_probs=38.0
Q ss_pred EEecceEEEEeccCCceeEEEEeccccccccccccccccCCeEEEEecCeEEEEecc
Q 006377 101 YLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASF 157 (648)
Q Consensus 101 YIS~~~iCF~S~ifg~~tk~vIp~~dI~~I~K~kt~~i~pnaI~I~T~~~k~~F~SF 157 (648)
.+..+.|++|..--....+-.|++.++..|.... ++++.|.|.+..|+|..-
T Consensus 31 vL~~~~L~yy~~~~~~~~~g~i~l~~~~~v~~~~-----~~~F~i~~~~r~~~l~a~ 82 (115)
T 2cod_A 31 KFDGLSISYYNNEKEMYSKGIIPLSAISTVRVQG-----DNKFEVVTTQRTFVFRVE 82 (115)
T ss_dssp EECSSEEEEEESSCCSSCCCEEETTTEEEEEEET-----TTEEEEEESSCCEEEECS
T ss_pred EEECCEEEEEcCCCCcccCCEEECCcceEEEeCC-----CCEEEEEeCCcEEEEECC
Confidence 3466778887654333456689999998887654 679999998888888643
No 38
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=55.46 E-value=17 Score=32.58 Aligned_cols=44 Identities=9% Similarity=0.115 Sum_probs=35.6
Q ss_pred CccchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006377 599 SAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 642 (648)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (648)
-.||++.|++|+..|.+-+.-.+..++++|..+..+...|+.+.
T Consensus 86 ~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 86 FEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36899999999999988888888888888887777777776553
No 39
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=55.12 E-value=12 Score=31.14 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=27.6
Q ss_pred HhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 006377 609 RMHYLKDEMLMVEARLERMWHEHAVLRAQLKDI 641 (648)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (648)
=|+.|.++-...++.++.+|.|...|+.+|+.|
T Consensus 48 yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~l 80 (80)
T 1nlw_A 48 HIKKLEDSDRKAVHQIDQLQREQRHLKRQLEKL 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 356788888888889999999999999998754
No 40
>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} SCOP: d.129.3.8 PDB: 3cnw_A
Probab=53.74 E-value=1.2e+02 Score=27.07 Aligned_cols=130 Identities=8% Similarity=0.074 Sum_probs=64.5
Q ss_pred eeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCCCceeEEEEEEeeeeeccCCceeeeeEEEEEEEe
Q 006377 285 AETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVY 364 (648)
Q Consensus 285 ~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~rg~tdi~~tpW~~~~~g~~~R~isY~~pl~~p~GPK~t~c~etQki~~~ 364 (648)
.+.++++|++++|.+ ++|-. .+ .++.- .+....+.. |+..|.++|. -|. ...+++..+
T Consensus 6 ~si~I~Ap~~~VW~~-l~d~~-~~-~~w~p-----~v~~~~~~~---GG~vR~~~~~------~G~-----~~~Erl~~~ 63 (146)
T 3f08_A 6 TSMEIFGSTEQVWQL-IGGFN-SL-PDWLP-----YIPSSKLTE---GGRVRHLANP------DGE-----TIIERLEVF 63 (146)
T ss_dssp EEEEESSCHHHHHHH-HCSTT-CH-HHHCT-----TCCEEEEEG---GGTEEEEECT------TSC-----EEEEEEEEE
T ss_pred EEEEEeCCHHHHHHH-Hhccc-cH-HHhCC-----CeEEEEEeC---CCeEEEEEeC------CCC-----EEEEEEEEE
Confidence 457889999999997 55542 22 33322 111122221 3677876541 121 235666656
Q ss_pred eCC--eEEEEEeEeeCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEeeeccchhhhhcchHHHHHHHHHHHHH
Q 006377 365 RNS--HLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIG 442 (648)
Q Consensus 365 ~~~--~~VIetst~t~DVPYGD~F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~~~~wv~ 442 (648)
++. .|-.... -.+.|+.+ ....|.+.+... .++|+|.-.+.+. + .+.-...+...++..|+.-++
T Consensus 64 D~~~~~~~y~iv--~g~~~~~~---~~~~~~v~p~~~--~~gt~v~w~~~~~----p--~g~~~~~~~~~~~~~~~~~L~ 130 (146)
T 3f08_A 64 NDKERYYTYSIM--NAPFPVTN---YLSTIQVKEGTE--SNTSLVEWSGTFT----P--VAVSDEEAINLVHGIYSDGLK 130 (146)
T ss_dssp ETTTTEEEEEEE--ECSSSEEE---EEEEEEEEECSS--TTCEEEEEEEEEE----E--SSSCHHHHHHHHHHHHHHHHH
T ss_pred eCCCCEEEEEEe--cCCCceeE---EEEEEEEEEecC--CCcEEEEEEEEEE----e--CCCCHHHHHHHHHHHHHHHHH
Confidence 542 3322221 13567543 455777887221 2378877666665 1 222222233344445555554
Q ss_pred HHHHHHh
Q 006377 443 MAHDVLK 449 (648)
Q Consensus 443 ~~~e~l~ 449 (648)
.+++.++
T Consensus 131 ~Lk~~~e 137 (146)
T 3f08_A 131 ALQHAFL 137 (146)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 4444443
No 41
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=52.44 E-value=22 Score=28.09 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=29.8
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006377 603 IPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLK 639 (648)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (648)
+.=||.++..|..|-....+.++.|+.|.++||..|.
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457788888888888888888888888888887764
No 42
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=52.33 E-value=15 Score=30.53 Aligned_cols=40 Identities=13% Similarity=0.093 Sum_probs=30.2
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006377 603 IPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 642 (648)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (648)
+|+.|+-|..|.+.+.--...|.+|++.+.+|+.+|+.++
T Consensus 23 lAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 23 LSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5677777777888888888889999999999988888776
No 43
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=51.54 E-value=13 Score=28.62 Aligned_cols=29 Identities=24% Similarity=0.375 Sum_probs=22.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006377 612 YLKDEMLMVEARLERMWHEHAVLRAQLKD 640 (648)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (648)
-||-|+.-..++.+.|..++.-|++.|+.
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46777777777888888888888887764
No 44
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=50.14 E-value=15 Score=31.04 Aligned_cols=34 Identities=9% Similarity=0.143 Sum_probs=29.1
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006377 610 MHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQ 643 (648)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (648)
|..|.++-...++.++.++++...|+.+|..|++
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~~ 87 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG 87 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5678888888888899999999999999887753
No 45
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=49.13 E-value=22 Score=30.22 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=20.7
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006377 606 LERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKD 640 (648)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (648)
++.|+..|..|=..-+++++.|..|..+||..|..
T Consensus 41 ~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 41 TQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666666665543
No 46
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Probab=48.65 E-value=40 Score=28.85 Aligned_cols=56 Identities=13% Similarity=0.170 Sum_probs=39.4
Q ss_pred EEecceEEEEeccCCceeEEEEeccccccccccccccccCCeEEEEecCeEEEEecc
Q 006377 101 YLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASF 157 (648)
Q Consensus 101 YIS~~~iCF~S~ifg~~tk~vIp~~dI~~I~K~kt~~i~pnaI~I~T~~~k~~F~SF 157 (648)
.+..+.|++|.+--....+-.|++.++..|...... -.++++.|.|.+..|+|..-
T Consensus 40 vL~~~~L~yy~~~~~~~~~g~i~L~~~~~v~~~~~~-~~~~~F~i~~~~r~~~l~a~ 95 (126)
T 1fao_A 40 TLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYSQ-ERVNCFCLVFPFRTFYLCAK 95 (126)
T ss_dssp EEETTEEEEESSTTCSSCSEEEEGGGCCEEEEECSS-SSSSEEEEEETTEEEEEECS
T ss_pred EEECCEEEEeCCCCCCCceeEEEccceEEEEecccC-CCCCEEEEEeCCcEEEEECC
Confidence 346677888865444455678999999877664322 24689999999888888654
No 47
>2l9p_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Staphylococcus epidermidis}
Probab=48.39 E-value=92 Score=28.03 Aligned_cols=21 Identities=5% Similarity=0.246 Sum_probs=17.8
Q ss_pred cceeeeeEEecCHHHHHhhhc
Q 006377 281 YTKVAETNFQMKVEDFYSLFF 301 (648)
Q Consensus 281 ~~~v~e~~fpisv~~~F~lLF 301 (648)
..+.++..|++|++++|.++-
T Consensus 8 ~~i~~~~~i~Ap~e~Vw~a~t 28 (164)
T 2l9p_A 8 NKIIFTRTFSAPINKVFDAYT 28 (164)
T ss_dssp SEEEECCEESSCHHHHHHHHH
T ss_pred ceEEEEEEeCCCHHHHHHHhC
Confidence 456788999999999999963
No 48
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=46.70 E-value=30 Score=29.10 Aligned_cols=37 Identities=5% Similarity=0.079 Sum_probs=27.9
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006377 604 PWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKD 640 (648)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (648)
.=|+.++..|+.|+......+|.+.||...|+...++
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd 59 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3366777788888888888888888888887776554
No 49
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=46.52 E-value=23 Score=32.57 Aligned_cols=45 Identities=16% Similarity=0.320 Sum_probs=38.0
Q ss_pred CccchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006377 599 SAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQ 643 (648)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (648)
-.||++.|++|+..|.+.+.-.+..++.+|..+..+...|..+.+
T Consensus 96 ~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~ 140 (151)
T 2zdi_C 96 IDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQ 140 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999998888888888888888888777777654
No 50
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=46.40 E-value=27 Score=32.61 Aligned_cols=41 Identities=15% Similarity=0.123 Sum_probs=32.5
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006377 603 IPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQ 643 (648)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (648)
++=|+.|+.-|++|+.-=..-+|.++.|+..|..|+..+|.
T Consensus 77 l~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~ 117 (152)
T 3a7p_A 77 LKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQ 117 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777778889999999999999888763
No 51
>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor, A sensor, drought tolerance, plant development; HET: A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A* 3k90_A* 3zvu_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A*
Probab=46.11 E-value=84 Score=30.77 Aligned_cols=147 Identities=13% Similarity=0.108 Sum_probs=73.3
Q ss_pred cccceeeeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccC--CCceeEEEEEEeeeeeccCCceeeee
Q 006377 279 ECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHY--EFGYSRDLSFQHPIKVYFGAKFGSCK 356 (648)
Q Consensus 279 e~~~~v~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~rg~tdi~~tpW~~~~--~g~~~R~isY~~pl~~p~GPK~t~c~ 356 (648)
.....++..++++|++++|.++ +|-. . +..++ ..|....+...+ ..+..|.++|. . |.+.+ .
T Consensus 48 ~~c~~~v~~~I~ApadkVW~lv-~dF~-~-l~~w~-----p~V~s~e~~eGd~g~vGsVR~lt~~---~---G~p~~--~ 111 (211)
T 3k3k_A 48 GSCSSLHAQRIHAPPELVWSIV-RRFD-K-PQTYK-----HFIKSCSVEQNFEMRVGCTRDVIVI---S---GLPAN--T 111 (211)
T ss_dssp TEEEEEEEEEESSCHHHHHHHH-TCTT-C-GGGTC-----SSEEEEECCTTCCCCTTCEEEEEES---S---SSSCE--E
T ss_pred CeEeEEEEEEEcCCHHHHHHHH-hCcC-C-hhHcC-----ccceEEEEecCCCCCCCcEEEEEec---C---CCccc--e
Confidence 3455677789999999999985 5532 1 12221 122222222111 23678988863 1 21222 2
Q ss_pred EEEEEEEeeCCeEEEEEeEeeCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEeeec--cchhhhhcchHHHHH
Q 006377 357 ETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKT--VWKGKIVQSTLEECR 434 (648)
Q Consensus 357 etQki~~~~~~~~VIetst~t~DVPYGD~F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT--~~K~~IEkst~~g~k 434 (648)
.++++..+++....+.-+..-.++||.+|-. .+.+.+.+. ++ |.....|.+-. .-.+.=+..+..-+.
T Consensus 112 vkErL~~lDd~~~~~sYsIieg~lpv~~Y~s---ti~V~p~~~----gg---V~Wt~~fes~~~D~P~g~~~e~a~~~v~ 181 (211)
T 3k3k_A 112 STERLDILDDERRVTGFSIIGGEHRLTNYKS---VTTVHRFEK----EN---RIWTVVLESYVVDMPEGNSEDDTRMFAD 181 (211)
T ss_dssp EEEEEEEEETTTTEEEEEEEEETTGGGTCEE---EEEEEEEEE----TT---EEEEEEEEEEEEECCSSSSSSCCHHHHH
T ss_pred EEEEEEEEeccCCEEEEEEeecCcceeEEEE---EEEEEECCC----CC---EEEEEEEEEecCCCCCCCCHHHHHHHHH
Confidence 3577766665422222222224789988653 345555532 22 56666665311 111222223333344
Q ss_pred HHHHHHHHHHHHHHhhc
Q 006377 435 DVYAMWIGMAHDVLKQK 451 (648)
Q Consensus 435 e~~~~wv~~~~e~l~~~ 451 (648)
..|+..++.+++.+++.
T Consensus 182 ~iy~~gL~~L~~~~e~~ 198 (211)
T 3k3k_A 182 TVVKLNLQKLATVAEAM 198 (211)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 46666666666666554
No 52
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=45.73 E-value=70 Score=31.30 Aligned_cols=82 Identities=11% Similarity=0.042 Sum_probs=43.1
Q ss_pred CeEEEEEeEeeCCCCCCCc-eEEE------EEEEEEec-CCC----CCCceEEEEEEEEEEeeeccchhhhhcchHHHHH
Q 006377 367 SHLVIETSQEVHDVPYGDY-FRVE------GLWDVMRD-DGG----SKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECR 434 (648)
Q Consensus 367 ~~~VIetst~t~DVPYGD~-F~Ve------~R~~It~~-~~~----sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~k 434 (648)
.++++..+...+++|-..- -+++ +.|.+.+. +.- .+++|++.....+...+ .+=+.++.+.+..++-
T Consensus 156 ~~~i~~~Sv~~~~~P~~~g~VR~~~~~~~~~~~~i~~~~g~~~l~~~~~~t~vt~~~~~Dp~G-~iP~~lvn~~~~~~~~ 234 (255)
T 2e3n_A 156 TWIVCNFSVDHDSAPLNNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGG-WAPASVLRAVAKREYP 234 (255)
T ss_dssp EEEEEEEECCCTTSCCCSSSEECEEEEEEEEEEEEC---CCCCCCGGGEEEEEEEEEEEECSS-CCCHHHHHHHHHHHHH
T ss_pred EEEEEEeccCCCCCCCCCCCEEEEEEeeeeeeeEeccCCCCcccccCCCcEEEEEEEEeCCCC-ccCHHHHHHHHhcccc
Confidence 3455666666677776543 3333 22333321 100 12489999999998854 3334445444455555
Q ss_pred HHHHHHHHHHHHHHh
Q 006377 435 DVYAMWIGMAHDVLK 449 (648)
Q Consensus 435 e~~~~wv~~~~e~l~ 449 (648)
..++.+.+.+.+..+
T Consensus 235 ~~l~~L~k~v~~~~~ 249 (255)
T 2e3n_A 235 KFLKRFTSYVQEKTA 249 (255)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcc
Confidence 555555555544433
No 53
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=44.38 E-value=24 Score=39.10 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=34.7
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006377 606 LERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQ 643 (648)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (648)
|++|+.+||+|+...=.+|.-||.=++-++..|++||-
T Consensus 115 LRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEv 152 (562)
T 3ghg_A 115 LRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEV 152 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999889999999988888888888883
No 54
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=44.04 E-value=33 Score=30.61 Aligned_cols=38 Identities=26% Similarity=0.402 Sum_probs=28.1
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006377 603 IPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKD 640 (648)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (648)
|.=|+--|..|+.+.+-++|.+||+|.|.-.|+.++-+
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 44566666677777788899999999998888776543
No 55
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=43.91 E-value=17 Score=30.31 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=16.7
Q ss_pred HHHhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006377 607 ERRMHYLKDEMLMVEARLERMWHEHAVLRAQL 638 (648)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (648)
++|+..|..|=...+++++.|+.|+.+||..|
T Consensus 42 ~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 42 QHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555555443
No 56
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=43.11 E-value=14 Score=29.10 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=24.3
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006377 602 SIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQL 638 (648)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (648)
-+.=||.++..|..|-.-..+.++.|+.|.++||.+|
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777777777777777777777777777665
No 57
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=42.12 E-value=40 Score=30.21 Aligned_cols=45 Identities=13% Similarity=0.193 Sum_probs=40.0
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhc
Q 006377 603 IPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLHKR 647 (648)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (648)
|..|+..|...+.++..++++++..|.++.--....+-+|.|+.+
T Consensus 76 i~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~L~er 120 (150)
T 3ajw_A 76 IQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQTLQDR 120 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999988888888889988753
No 58
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=41.21 E-value=74 Score=23.09 Aligned_cols=27 Identities=22% Similarity=0.463 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 006377 615 DEMLMVEARLERMWHEHAVLRAQLKDI 641 (648)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (648)
||....|..|+.+..-++.||+.|..|
T Consensus 20 eelaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678888999999999999999988765
No 59
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=39.74 E-value=65 Score=24.63 Aligned_cols=41 Identities=20% Similarity=0.244 Sum_probs=26.4
Q ss_pred cchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 006377 601 ESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDI 641 (648)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (648)
+-+++|++++.-|..=-.--.+-|.+-|.|+.-||++|++|
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555555554333333566777899999999998877
No 60
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=39.51 E-value=41 Score=33.48 Aligned_cols=39 Identities=21% Similarity=0.222 Sum_probs=34.0
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 006377 603 IPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDI 641 (648)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (648)
..+|..|+..+|.+-...+.+|+++|.|..-+.+||...
T Consensus 166 k~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~ 204 (228)
T 3q0x_A 166 KQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQC 204 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889999999999999999999999998888888754
No 61
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=36.67 E-value=34 Score=27.78 Aligned_cols=49 Identities=14% Similarity=0.239 Sum_probs=36.2
Q ss_pred ccchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcC
Q 006377 600 AESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLHKRE 648 (648)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (648)
.+.+.=++|+++||.+=..-.||-.-||=.....||..+.+|||=..||
T Consensus 21 ~~~L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlERnqeRe 69 (71)
T 3bbp_D 21 VQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLERNQERE 69 (71)
T ss_dssp --------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhHhhh
Confidence 3556667899999999999999999999999999999999999977664
No 62
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=35.97 E-value=37 Score=36.12 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=33.6
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006377 605 WLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQ 643 (648)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (648)
=||+|+.+||+=+...=.+|..||.-+.-+++.+++||-
T Consensus 117 eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~ 155 (390)
T 1deq_A 117 DLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEV 155 (390)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 399999999998877666999999998888888888884
No 63
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.26 E-value=39 Score=30.72 Aligned_cols=54 Identities=20% Similarity=0.293 Sum_probs=38.5
Q ss_pred ecceEEEEeccCCceeEEEEeccccccccccccccc-----cCCeEEEEecCeEEEEec
Q 006377 103 FVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGI-----FPNAIEIFAAGKKYFFAS 156 (648)
Q Consensus 103 S~~~iCF~S~ifg~~tk~vIp~~dI~~I~K~kt~~i-----~pnaI~I~T~~~k~~F~S 156 (648)
..+-|+.|-+=-+.+.-..|||.+|..|+-.+...+ .|+.++|.|.+..|+-..
T Consensus 32 D~K~Itlf~~e~~~k~ykeIpLseIL~v~~~~~~~~~~~~~~phcFEi~T~~~~y~Vge 90 (129)
T 2d9z_A 32 DSKCLTLFQNESGSKYYKEIPLSEILRISSPRDFTNISQGSNPHCFEIITDTMVYFVGE 90 (129)
T ss_dssp ESSCEEEESCSSCCSCCCEECTTTCCEECCTTCCCCSSSCSCCCSEEEECSSCEEEECB
T ss_pred cCCeEEEEecCCCCceeceeeHHHhcccccccCccccCCCCCCceEEEEECCEEEEEcc
Confidence 455566654434444445799999999999876554 457899999888887654
No 64
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=34.76 E-value=8.2 Score=43.42 Aligned_cols=41 Identities=10% Similarity=0.128 Sum_probs=0.0
Q ss_pred eeceEEEEecceEEEEeccCCceeEEEEecccccccccccc
Q 006377 95 LLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKT 135 (648)
Q Consensus 95 ~~~GrLYIS~~~iCF~S~ifg~~tk~vIp~~dI~~I~K~kt 135 (648)
.-.|++|+|.+.||+.-..-..+..+.|++++|..++...+
T Consensus 42 ~q~G~~yLTShRiiyvD~~~p~~~s~~l~L~~I~~~e~~ag 82 (566)
T 1w7p_D 42 RQRGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYVNYSSG 82 (566)
T ss_dssp -----------------------------------------
T ss_pred ccCceEEEEeeeEEEecCCCCcceEEEEEhHHcceeeeeec
Confidence 35699999999999976655445678999999999998643
No 65
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=34.52 E-value=78 Score=25.91 Aligned_cols=45 Identities=20% Similarity=0.255 Sum_probs=36.7
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 006377 602 SIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLHK 646 (648)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (648)
+++=+.|+|.-|+.|..-|..+++.+..|-..-=..|.++|-|.+
T Consensus 3 ~m~aiKkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q 47 (75)
T 3mtu_A 3 SMDAIKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQ 47 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 455678999999999999999999999987776677777776643
No 66
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1
Probab=32.46 E-value=1.8e+02 Score=23.99 Aligned_cols=65 Identities=18% Similarity=0.191 Sum_probs=39.7
Q ss_pred cceEEEEeccCCceeEEEEecccccccccccccc------ccCCeEEEEecCeEEEEeccCCHHHHHHHHHH
Q 006377 104 VHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAG------IFPNAIEIFAAGKKYFFASFLSRDEAFKLITD 169 (648)
Q Consensus 104 ~~~iCF~S~ifg~~tk~vIp~~dI~~I~K~kt~~------i~pnaI~I~T~~~k~~F~SF~~RD~a~~lI~~ 169 (648)
.+.|++|.+--....+-.|++.++..|....... --++.+.|.|.+..|+|. -.+.+++-.=|..
T Consensus 35 ~~~L~yy~~~~~~~~~g~i~L~~~~~v~~~~~~~~~~~~~~~~~~F~i~~~~r~~~l~-a~s~~e~~~Wi~a 105 (117)
T 1v5u_A 35 KHQLRYYDHRMDTECKGVIDLAEVEAVAPGTPTIGAPKTVDEKAFFDVKTTRRVYNFC-AQDVPSAQQWVDR 105 (117)
T ss_dssp TTEEEEESSSSCSSCCCEEEGGGEEEEECCCCCTTSCSSSCTTTCEEEEESSCEEEEE-CSSHHHHHHHHHH
T ss_pred CCEEEEeecCCCCccceEEEccCcEEEeecCccccccccCCCCeEEEEECCCceEEEE-CCCHHHHHHHHHH
Confidence 5677877553333445688999988776432111 123689999988888886 3445554433333
No 67
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=32.28 E-value=35 Score=30.87 Aligned_cols=53 Identities=26% Similarity=0.363 Sum_probs=37.5
Q ss_pred ecceEEEEeccCCceeEEEEeccccccccccccccc-----cCCeEEEEecCeEEEEe
Q 006377 103 FVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGI-----FPNAIEIFAAGKKYFFA 155 (648)
Q Consensus 103 S~~~iCF~S~ifg~~tk~vIp~~dI~~I~K~kt~~i-----~pnaI~I~T~~~k~~F~ 155 (648)
..+-|+.|-+=-+.+.-..|||.||..|+-.+...+ .|+.++|.|.+..|+-.
T Consensus 32 D~K~Itlf~~e~~~~~ykeIpL~eIl~v~~~~~~~~l~~~~~~hcFEi~T~~~~yyVg 89 (125)
T 2coa_A 32 DCKCITLFQNNTTNRYYKEIPLSEILTVESAQNFSLVPPGTNPHCFEIVTANATYFVG 89 (125)
T ss_dssp CSSEEEEESSSSCSSCSEEEETTTCCEEEESCCCSSSCTTSCCEEEEEECSSCCCCEE
T ss_pred cCCeEEEEecCCCCceeeeeehhHeecccccccccccCCCCCCceEEEEeCCeEEEEc
Confidence 445566665444545556799999999999865544 56789999987777654
No 68
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=31.89 E-value=2.2e+02 Score=23.49 Aligned_cols=62 Identities=21% Similarity=0.194 Sum_probs=38.5
Q ss_pred EEecceEEEEeccCCceeEEEEeccccccccccccccccCCeEEEEecC-eEEEEeccCCHHHH
Q 006377 101 YLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAG-KKYFFASFLSRDEA 163 (648)
Q Consensus 101 YIS~~~iCF~S~ifg~~tk~vIp~~dI~~I~K~kt~~i~pnaI~I~T~~-~k~~F~SF~~RD~a 163 (648)
.|..+.|++|.+--...-+-.|++.++..+.......--++++.|.|.+ ..|+|.. .+.++.
T Consensus 27 vL~~~~L~yy~~~~~~~~~g~i~L~~~~~~~~~~~~~~~~~~F~i~~~~~r~~~l~a-~s~~e~ 89 (113)
T 1pls_A 27 VLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQDFGKRMFVFKITTTKQQDHFFQA-AFLEER 89 (113)
T ss_dssp EEETTEEEEESSTTCSSCSEEEESSSCCEESSCCSSCCSSSEEEEEETTTEEEEEEC-SSHHHH
T ss_pred EEECCEEEEEeCCCCCCcceEEEcCCCEEEEecCCCCCCccEEEEEcCCCCEEEEEC-CCHHHH
Confidence 3466777777654333456689999988865222222246799999876 6777754 334433
No 69
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Probab=31.67 E-value=1.6e+02 Score=25.58 Aligned_cols=58 Identities=9% Similarity=0.161 Sum_probs=38.9
Q ss_pred EEEEecceEEEEeccCC----ceeEEEEeccccccccccccccccCCeEEEEecCeEEEEecc
Q 006377 99 HMYLFVHFICFYSNIFG----FETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASF 157 (648)
Q Consensus 99 rLYIS~~~iCF~S~ifg----~~tk~vIp~~dI~~I~K~kt~~i~pnaI~I~T~~~k~~F~SF 157 (648)
++|+.++.|-..+..-. ......+|+.+|.-+.-. ...-..|++.|.+..+.++|..=
T Consensus 29 ~~FLfND~Ll~a~~~~~~~~~~~~~~~~~L~~~~v~d~~-d~~~~~n~f~i~~~~~s~~~~ae 90 (113)
T 1zc3_B 29 HGFLMNDCLLVATWLPQRRGMYRYNALYPLDRLAVVNVK-DNPPMKDMFKLLMFPESRIFQAE 90 (113)
T ss_dssp EEEEESSEEEEEEEECCTTSCEEEEEEEETTTCEEEEEC-CBTTBSSEEEEEETTEEEEEECS
T ss_pred EEEecCCEEEEEEEeccCcccEEEEEEEEcccCEEEECC-CCcccceEEEEEeCCceEEEEcC
Confidence 57888887766654222 244456899996555433 33346899999998888888553
No 70
>2gcl_A Hypothetical 63.0 kDa protein in DAK1-ORC1 intergenic region; chromaint, double PH domain, yfact, DNA replication, RPA; 2.21A {Saccharomyces cerevisiae} SCOP: b.55.1.10 PDB: 2gcj_A
Probab=31.64 E-value=65 Score=32.63 Aligned_cols=79 Identities=22% Similarity=0.414 Sum_probs=54.6
Q ss_pred EEEEEEeecceeceEEEEecceEEEEeccCCceeEEEEeccccccccccc-c-----ccccCCeEEEEecC--eEEEEec
Q 006377 85 DFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAK-T-----AGIFPNAIEIFAAG--KKYFFAS 156 (648)
Q Consensus 85 ~f~CaL~r~i~~~GrLYIS~~~iCF~S~ifg~~tk~vIp~~dI~~I~K~k-t-----~~i~pnaI~I~T~~--~k~~F~S 156 (648)
...|.+..+ .|.||.-++.+-|- .+-.+.||++||.+|+=.. + .+-| -+.|.+++ .+|.|++
T Consensus 166 ~Vkcs~ka~---eG~LypL~~gflF~-----~KP~~~i~~~~I~sV~fsrvg~~~~~~rTF--dl~v~~k~g~~~~~Fs~ 235 (261)
T 2gcl_A 166 AVSCSFKAN---EGYLYPLDNAFFFL-----TKPTLYIPFSDVSMVNISRAGQTSTSSRTF--DLEVVLRSNRGSTTFAN 235 (261)
T ss_dssp CEEEEETTE---EEEEEECSSEEEEE-----SSSCEEEEGGGEEEEEEEC--------CEE--EEEEEESTTCCEEEEEE
T ss_pred eEEEeccCC---ceEEEEecCceEEe-----eCCcEEEEhhHeeEEEEEeccCCcccCceE--EEEEEEcCCCccEEEcc
Confidence 567776543 59999999988774 3446789999999998543 1 1222 57888863 6999977
Q ss_pred cCCHHHHHHHHHHHHHhcC
Q 006377 157 FLSRDEAFKLITDGWLQHG 175 (648)
Q Consensus 157 F~~RD~a~~lI~~~w~~~~ 175 (648)
. +|++ |..|.+..+...
T Consensus 236 I-dreE-~~~L~~ylk~k~ 252 (261)
T 2gcl_A 236 I-SKEE-QQLLEQFLKSKN 252 (261)
T ss_dssp E-EGGG-HHHHHHHHHHTT
T ss_pred c-CHHH-HHHHHHHHHHcC
Confidence 5 5666 566666666543
No 71
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=30.33 E-value=1.1e+02 Score=25.82 Aligned_cols=56 Identities=21% Similarity=0.351 Sum_probs=37.5
Q ss_pred EEecceEEEEeccCCceeEEEEecccccccccccc--ccccCCeEEEEecCeEEEEec
Q 006377 101 YLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKT--AGIFPNAIEIFAAGKKYFFAS 156 (648)
Q Consensus 101 YIS~~~iCF~S~ifg~~tk~vIp~~dI~~I~K~kt--~~i~pnaI~I~T~~~k~~F~S 156 (648)
.|..+.|++|.+--....+-.|++.++..|..... ..--++.+.|.|.+..|+|..
T Consensus 36 vL~~~~L~yy~~~~~~~~~g~i~l~~~~~v~~~~~~~~~~~~~~F~i~~~~r~~~l~a 93 (125)
T 1eaz_A 36 QLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTSRTFYVQA 93 (125)
T ss_dssp EECSSEEEEESSTTCSSCSEEEEGGGCCEEEECTTHHHHTCSSEEEEECSSCEEEEEC
T ss_pred EEeCCEEEEEcCCCCCcceeEEEcccceEEeeccccccCCcCCEEEEEeCCcEEEEEc
Confidence 34667788875533334566899999887765321 112367999999888888854
No 72
>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA splicing, translation; NMR {Canis lupus familiaris}
Probab=28.59 E-value=48 Score=31.53 Aligned_cols=47 Identities=11% Similarity=0.148 Sum_probs=35.3
Q ss_pred EEEEEEeecceeceEEEEecceEEEEeccCCceeEEEEecccccc--ccccc
Q 006377 85 DFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTA--VRRAK 134 (648)
Q Consensus 85 ~f~CaL~r~i~~~GrLYIS~~~iCF~S~ifg~~tk~vIp~~dI~~--I~K~k 134 (648)
+-.+.+....+-.|.||||++.|-+.+. ...-+.|||..|.- |.+..
T Consensus 31 ~v~~vl~~~~~g~GtLyVt~~~l~W~~~---~~~G~sI~YpsIsLHAIsrd~ 79 (171)
T 1zyi_A 31 ETEAVLNGKGLGTGTLYIAESRLSWLDG---SGLGFSLEYPTISLHAVSRDL 79 (171)
T ss_dssp SEEEEBTTBCCCEEEEEEETTEEEEEET---TTEEEEESSCCCSEEECCSSC
T ss_pred CEEEEECCCccCceEEEEEcCEEEEEcC---CCcEEEeecCeEEEEEEecCC
Confidence 4556665555578999999999988887 35778999999875 55543
No 73
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=27.93 E-value=1.5e+02 Score=22.57 Aligned_cols=41 Identities=17% Similarity=0.227 Sum_probs=36.6
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006377 603 IPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQ 643 (648)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (648)
++=|.+-=.|||.|..---.||-++-+|-.-+|.-|+.|..
T Consensus 12 Ve~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~ 52 (54)
T 1deb_A 12 VEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQG 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHcc
Confidence 56677888999999999999999999999999999998864
No 74
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=27.70 E-value=99 Score=24.87 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=33.4
Q ss_pred cchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006377 601 ESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 642 (648)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (648)
|+=+|.+.++.-|..+...-...|...+.|..-||.++..|+
T Consensus 28 EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~ 69 (77)
T 3trt_A 28 EAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLT 69 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 555799999988888888777778888888888887777665
No 75
>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis}
Probab=27.49 E-value=3.5e+02 Score=24.56 Aligned_cols=135 Identities=11% Similarity=0.085 Sum_probs=67.9
Q ss_pred eeeEEecCHHHHHhhhccCCchhHHHHHHHHc-CCcceeeccccccCCCceeEEEEEEeeeeeccCCceeeeeEEEEEEE
Q 006377 285 AETNFQMKVEDFYSLFFSDDTVNFIESFHRKC-GDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRV 363 (648)
Q Consensus 285 ~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~r-g~tdi~~tpW~~~~~g~~~R~isY~~pl~~p~GPK~t~c~etQki~~ 363 (648)
.+.++++|++++|.++ .|-. .+ ++.-.. .+.++.-+.+. ...+..|.+ |. .+ .+++..
T Consensus 6 ~si~I~Ap~~~VW~~v-~Df~-~~--~w~P~v~~s~e~~eg~~~--~~vGsvR~~----------gg---~v--~Erl~~ 64 (160)
T 3p51_A 6 NSIVVDAPVERVWSRI-RNFH-DF--SWAPSLIKSCKKVGGGGG--YSVGARRLL----------NG---EF--LDTLIA 64 (160)
T ss_dssp EEEEESSCHHHHHHHH-CCTT-CC--TTCTTTCCCEEEESSCCT--TCTTCEEEE----------TT---TE--EEEEEE
T ss_pred EEEEECCCHHHHHHHH-hCcC-CC--eEccCceEEEEEEecCCC--CCCCCEEEE----------CC---EE--EEEEEE
Confidence 4578899999999874 4532 22 222111 11122112110 112456754 21 22 466666
Q ss_pred eeCC--eEEEEEeEeeCCCCC-CCce-EEEEEEEEEecCCCCCCceEEEEEEEEEEeeeccchhhhhcchHHHHHHHHHH
Q 006377 364 YRNS--HLVIETSQEVHDVPY-GDYF-RVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAM 439 (648)
Q Consensus 364 ~~~~--~~VIetst~t~DVPY-GD~F-~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~~~~ 439 (648)
+++. .|-.... -.++|- |+.+ .....|.+.+.+. .++|.|.-.+.+. ... ..+..-++..|..
T Consensus 65 ~D~~~~~~sY~ii--~g~l~~~~~~~~~y~~~~~v~p~~~--~ggt~V~w~~~~~--~~~-------~~~~~~~~~~~~~ 131 (160)
T 3p51_A 65 YSEIERRIMYSMD--EGPSPVSSGEIYNYVGNLHLLPVTI--DDTTFVEWSGSWE--SAS-------TEAVEYMNTVYRS 131 (160)
T ss_dssp EETTTTEEEEEEE--ECSTTSSTTTEEEEEEEEEEEEETT--TTEEEEEEEEEEE--ESC-------SHHHHHHHHHHHH
T ss_pred EcCCCcEEEEEEe--cCCCcccccceeEEEEEEEEEEecC--CCCEEEEEEEEEE--eCH-------HHHHHHHHHHHHH
Confidence 6553 2222221 235661 1112 3566777887642 1378766555544 321 1334455777778
Q ss_pred HHHHHHHHHhhccC
Q 006377 440 WIGMAHDVLKQKNL 453 (648)
Q Consensus 440 wv~~~~e~l~~~~~ 453 (648)
.++.+++.++..+.
T Consensus 132 ~L~~Lk~~~e~~~~ 145 (160)
T 3p51_A 132 LLADLAAEFTSESR 145 (160)
T ss_dssp HHHHHHHHSCTTTC
T ss_pred HHHHHHHHHhhccc
Confidence 77777777775444
No 76
>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca}
Probab=25.67 E-value=3.3e+02 Score=23.65 Aligned_cols=18 Identities=17% Similarity=0.350 Sum_probs=15.0
Q ss_pred eeeEEecCHHHHHhhhccC
Q 006377 285 AETNFQMKVEDFYSLFFSD 303 (648)
Q Consensus 285 ~e~~fpisv~~~F~lLFgD 303 (648)
.+.++++|++++|.++ +|
T Consensus 6 ~si~I~ap~e~Vw~~l-~d 23 (151)
T 2le1_A 6 RSVEVAAPAADVWTLV-GD 23 (151)
T ss_dssp EEEEESSCHHHHHHHH-TT
T ss_pred EEEEecCCHHHHHHHH-hC
Confidence 4678899999999996 44
No 77
>3f5r_A FACT complex subunit POB3; APC7736, FACT complex (SPT16P-POB3P), saccharomyces cerevisi structural genomics, PSI-2; 1.70A {Saccharomyces cerevisiae}
Probab=25.36 E-value=2.6e+02 Score=26.99 Aligned_cols=87 Identities=14% Similarity=0.224 Sum_probs=60.7
Q ss_pred eEEEEEEeecceeceEEEEecceEEEEec-cCC-----ceeEEEEeccccccccccccccccCCeEEEEecC-eEEEEec
Q 006377 84 QDFNCAFQESILLQGHMYLFVHFICFYSN-IFG-----FETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAG-KKYFFAS 156 (648)
Q Consensus 84 ~~f~CaL~r~i~~~GrLYIS~~~iCF~S~-ifg-----~~tk~vIp~~dI~~I~K~kt~~i~pnaI~I~T~~-~k~~F~S 156 (648)
.+|.=.+.......|+|=|++.-|.|.+. -=| .+..+.|+-.||..++=.+.+. -..+.|.+++ .-|.|..
T Consensus 24 ~~F~nI~l~~s~~~G~lkla~~glgWK~~~~tG~~~~~~~k~~~i~~sdI~~a~W~r~~r--g~~LrI~~K~g~~~~fdG 101 (191)
T 3f5r_A 24 TDFDRIYLNQSKFSGRFRIADSGLGWKISTSGGSAANQARKPFLLPATELSTVQWSRGCR--GYDLKINTKNQGVIQLDG 101 (191)
T ss_dssp EEEEEEEETTCSSCEEEEEETTEEEEEECCSSTTTHHHHCCCEEEEGGGEEEEEEEECSS--SEEEEEEESSSCEEEEEE
T ss_pred eeECcEeecCCCcccEEEEcCCceEEeecCCCCccccccCceEEEcHHHcCeEEEEEccC--CcEEEEEECCCceEEecC
Confidence 34553333335578999999999999976 323 1145789999999998776542 3478888875 7799999
Q ss_pred cCCHHHHHHHHHHHHHhc
Q 006377 157 FLSRDEAFKLITDGWLQH 174 (648)
Q Consensus 157 F~~RD~a~~lI~~~w~~~ 174 (648)
|...| |..|.+..+..
T Consensus 102 F~~~D--~~~L~~~fk~~ 117 (191)
T 3f5r_A 102 FSQDD--YNLIKNDFHRR 117 (191)
T ss_dssp ECGGG--HHHHHHHHHHH
T ss_pred CCHHH--HHHHHHHHHHH
Confidence 96544 56666666553
No 78
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=24.36 E-value=1.5e+02 Score=24.76 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006377 618 LMVEARLERMWHEHAVLRAQLKDIEQ 643 (648)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (648)
.-.-.+|+.|+.|.+-||-+++.+.+
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~ 48 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQY 48 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34456899999999999999987754
No 79
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=24.19 E-value=87 Score=31.55 Aligned_cols=43 Identities=21% Similarity=0.245 Sum_probs=31.6
Q ss_pred ccchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006377 600 AESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 642 (648)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (648)
.+-+..|++.+..|..--.-..+-|..+|+|+..||++|++|.
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4557788888877765555445578888888888888888764
No 80
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=23.90 E-value=2.2e+02 Score=20.98 Aligned_cols=40 Identities=23% Similarity=0.357 Sum_probs=23.7
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006377 604 PWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQ 643 (648)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (648)
++|.|.|..||..-...|..-+.+-.=.+-||..+.+||.
T Consensus 6 aylrkkiarlkkdnlqlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 6 AYLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 6888888887765544444434444445556655556654
No 81
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=23.42 E-value=59 Score=26.71 Aligned_cols=33 Identities=12% Similarity=0.192 Sum_probs=25.5
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHH
Q 006377 602 SIPWLERRMHYLKDEMLMVEARLERMWHEHAVL 634 (648)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (648)
=|.||+++...|..|+.....+.+.|++.++.|
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367788888888888888888888888777655
No 82
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=23.37 E-value=88 Score=25.40 Aligned_cols=35 Identities=14% Similarity=0.277 Sum_probs=20.5
Q ss_pred HHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006377 608 RRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 642 (648)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (648)
++|..|-+++...|+..+.+..|-..||.++..|.
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~ 63 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLRQKVRQLE 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444545555555555666667777777666553
No 83
>3qrz_A Abscisic acid receptor PYL5; crystal, hormone receptor; 2.60A {Arabidopsis thaliana}
Probab=22.38 E-value=16 Score=36.31 Aligned_cols=143 Identities=15% Similarity=0.080 Sum_probs=63.7
Q ss_pred ccceeeeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCCCceeEEEEEEeeeeeccCCceeeeeEEE
Q 006377 280 CYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQ 359 (648)
Q Consensus 280 ~~~~v~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~rg~tdi~~tpW~~~~~g~~~R~isY~~pl~~p~GPK~t~c~etQ 359 (648)
.....+..++++|++++|.++ +|-. . +..+.......++.-+.|. ..+..|.++|. . |.+...+ ++
T Consensus 77 ~~~~~v~~~I~ApadkVW~lv-~Df~-~-pk~w~p~I~s~el~eGdg~---gvGSVR~lt~~---~---G~p~~~v--kE 142 (223)
T 3qrz_A 77 QCCSSVVQMIHAPPESVWALV-RRFD-N-PKVYKNFIRQCRIVQGDGL---HVGDLREVMVV---S---GLPAVSS--TE 142 (223)
T ss_dssp CEEECCCCCCSSCHHHHHHHH-HCCS-S-GGGTCSSCCCCCCCC---C---CSSCCCCCCC---------CCCCCC--CC
T ss_pred eEEEEEEEEEcCCHHHHHHHH-hCCC-C-hhHcchhcCEEEEEcCCCC---CCCeEEEEEec---C---CCccceE--EE
Confidence 344556678899999999995 4432 1 1222111112222223331 23567888775 1 2222223 35
Q ss_pred EEEEeeCCeEEEEEeEeeCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEeeeccchhhhhcchHHHHHHHHHH
Q 006377 360 KFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAM 439 (648)
Q Consensus 360 ki~~~~~~~~VIetst~t~DVPYGD~F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~~~~ 439 (648)
++..+++....+.-+..-.++|+.+|=.+ +.+.+.+. ++|.+.-.+.+. .-.+.=+..+..-+...|+.
T Consensus 143 rLe~iDde~~~~sYsIieG~~p~~~Y~st---ikV~p~~d---GGT~V~Ws~~f~-----pp~g~~~e~a~~~v~~~y~~ 211 (223)
T 3qrz_A 143 RLEILDEERHVISFSVVGGDHRLKNYRSV---TTLHASDD---EGTVVVESYIVD-----VPPGNTEEETLSFVDTIVRC 211 (223)
T ss_dssp CCSEEETTTTEEECCCTTCSSSCCCCCCE---EEC-----------CCEEEEEEC-----SCSSSCSTTHHHHHHHHHHH
T ss_pred EEEEEeccCCEEEEEEEeCCCccccEEEE---EEEEEcCC---CCEEEEEEEEEE-----cCCCCCHHHHHHHHHHHHHH
Confidence 66555554333333333356787776655 44554432 367666554331 12233333344444555555
Q ss_pred HHHHHHHH
Q 006377 440 WIGMAHDV 447 (648)
Q Consensus 440 wv~~~~e~ 447 (648)
.++.+++.
T Consensus 212 gL~~Lk~~ 219 (223)
T 3qrz_A 212 NLQSLARS 219 (223)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 55444443
No 84
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=22.31 E-value=3.2e+02 Score=22.57 Aligned_cols=57 Identities=9% Similarity=0.206 Sum_probs=36.1
Q ss_pred EEEEEEEecCCCCCCceEEEEEEEEEEeeeccchhhhhcchHHHHHHHHHHHHHHHHHHHhh
Q 006377 389 EGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMAHDVLKQ 450 (648)
Q Consensus 389 e~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~~~~wv~~~~e~l~~ 450 (648)
...|.+++.+ . +|+|.......+. ..++...+..-...-++..+..+++.+++.+++
T Consensus 88 ~~~~~~~~~~---~-gT~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~ 144 (147)
T 2d4r_A 88 EGTWVFLPEG---E-GTRVVLTLTYELT-IPIFGGLLRKLVQKLMQENVESLLKGLEERVLA 144 (147)
T ss_dssp EEEEEEEECS---S-SEEEEEEEEEECC-CTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEECC---C-CcEEEEEEEEecC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5688898764 2 4888887777664 344554454333345566677777777776665
No 85
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=22.30 E-value=1.5e+02 Score=24.34 Aligned_cols=44 Identities=18% Similarity=0.230 Sum_probs=26.5
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhH-HHhhh
Q 006377 603 IPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDI-EQLHK 646 (648)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 646 (648)
|.-||-|+.|+-+=+.---.-+-+.+++...|+.+|..| +||+.
T Consensus 16 i~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 16 LVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555544444445556678888888888877 45543
No 86
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=21.73 E-value=97 Score=20.89 Aligned_cols=28 Identities=18% Similarity=0.382 Sum_probs=24.4
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHH
Q 006377 603 IPWLERRMHYLKDEMLMVEARLERMWHE 630 (648)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (648)
+.=|.||+..||.--+.|....+.+||.
T Consensus 3 vqalkkrvqalkarnyaakqkvqalrhk 30 (33)
T 1fmh_B 3 VQALKKRVQALKARNYAAKQKVQALRHK 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3458899999999999999999999985
No 87
>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid, hormone recepto; HET: A8S; 2.05A {Arabidopsis thaliana}
Probab=21.57 E-value=5.5e+02 Score=24.76 Aligned_cols=118 Identities=11% Similarity=0.061 Sum_probs=57.7
Q ss_pred CcccceeeeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCCCceeEEEEEEeeeeeccCCceeeeeE
Q 006377 278 PECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKE 357 (648)
Q Consensus 278 pe~~~~v~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~rg~tdi~~tpW~~~~~g~~~R~isY~~pl~~p~GPK~t~c~e 357 (648)
|.....++..++++|++++|.++ +|-. . +..++......++.-+.| ...+..|.++|.. |.+.+ ..
T Consensus 51 ~~~c~~~v~~~I~ApadkVW~lv-~Df~-~-l~~w~p~V~s~e~~eGd~---g~vGsVR~lt~~~------G~p~~--~v 116 (208)
T 3jrs_A 51 NGRCSSLLAQRIHAPPETVWSVV-RRFD-R-PQIYKHFIKSCNVSEDFE---MRVGCTRDVNVIS------GLPAN--TS 116 (208)
T ss_dssp TTEEEEEEEEEESSCHHHHHHHH-TCTT-C-GGGTCTTEEEEECCTTCC---CSTTCEEEEEECT------TSSCC--EE
T ss_pred CCeEeEEEEEEEeCCHHHHHHHH-hCcC-C-hhHccccceEEEEecCCC---CCCCeEEEEEecC------CCccc--eE
Confidence 34455677789999999999996 4432 1 122221111111111111 1236789888741 22222 23
Q ss_pred EEEEEEeeCCeEEEEEeEeeCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEe
Q 006377 358 TQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFS 416 (648)
Q Consensus 358 tQki~~~~~~~~VIetst~t~DVPYGD~F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~ 416 (648)
++++..+++....+.-+..-.++|+.+|-. ...+.+...+ ++|.+ ...+.|.
T Consensus 117 kErL~~lDde~~~~sYsIieG~lpv~~Y~s---ti~V~p~~~g--~~t~V--~Wt~~fe 168 (208)
T 3jrs_A 117 RERLDLLDDDRRVTGFSITGGEHRLRNYKS---VTTVHRFEKE--EEEER--IWTVVLE 168 (208)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSSCTTCEE---EEEEEEEEC-------C--EEEEEEE
T ss_pred EEEEEEEeccCCEEEEEEeeCCcceeeEEE---EEEEEEccCC--CccEE--EEEEEEE
Confidence 577777765432222222336799999865 3445553221 25553 3444454
No 88
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.75 E-value=58 Score=30.47 Aligned_cols=39 Identities=10% Similarity=0.118 Sum_probs=34.8
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006377 604 PWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 642 (648)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (648)
+=+|+|...|+..+.-++..|++|+..++-||.-|..++
T Consensus 111 ~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m~ 149 (154)
T 2ocy_A 111 YAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSLD 149 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 458999999999999999999999999999998776654
No 89
>2doh_C Fragment, plasminogen-binding group A streptococcal M-like PAM; lysine-binding site, kringle domains, hydrolase; HET: DIO; 2.30A {Homo sapiens} PDB: 2kj4_B 1i5k_C 2doi_C
Probab=20.29 E-value=71 Score=21.69 Aligned_cols=11 Identities=45% Similarity=0.519 Sum_probs=6.4
Q ss_pred HHHHHHHHHHH
Q 006377 623 RLERMWHEHAV 633 (648)
Q Consensus 623 ~~~~~~~~~~~ 633 (648)
||..=||+|+.
T Consensus 12 rLknERh~~~e 22 (30)
T 2doh_C 12 RLKNERHEEAE 22 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444777776
No 90
>3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor, PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C
Probab=20.27 E-value=5.4e+02 Score=24.17 Aligned_cols=93 Identities=10% Similarity=0.125 Sum_probs=47.6
Q ss_pred ccceeeeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccc-cCCCceeEEEEEEeeeeeccCCceeeeeEE
Q 006377 280 CYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHR-HYEFGYSRDLSFQHPIKVYFGAKFGSCKET 358 (648)
Q Consensus 280 ~~~~v~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~rg~tdi~~tpW~~-~~~g~~~R~isY~~pl~~p~GPK~t~c~et 358 (648)
.....+..++++|++++|.++ +|-. .+ ..++- .+......- ....+..|.++|. . |.+.+ ..+
T Consensus 26 ~~~~~v~~~I~Apa~~VW~~v-~df~-~l-~~w~P-----~V~s~~~eG~~ggvGsvR~lt~~---~---G~p~~--~vk 89 (183)
T 3rt2_A 26 QCSSTLVKHIKAPLHLVWSIV-RRFD-EP-QKYKP-----FISRCVVQGKKLEVGSVREVDLK---S---GLPAT--KST 89 (183)
T ss_dssp EEEEEEEEEESSCHHHHHHHH-TCTT-CG-GGTCT-----TEEEEEESSSCCCTTCEEEEEEC---C---SSTTC--EEE
T ss_pred ceEEEEEEEEeCCHHHHHHHH-hCcC-ch-hhcCc-----cceEEEeeCCCCCCCcEEEEEeC---C---CCccc--eEE
Confidence 445667789999999999985 5532 11 22221 122111111 1223678988875 1 21111 235
Q ss_pred EEEEEeeCCeEEEEEeEeeCCCCCCCceEE
Q 006377 359 QKFRVYRNSHLVIETSQEVHDVPYGDYFRV 388 (648)
Q Consensus 359 Qki~~~~~~~~VIetst~t~DVPYGD~F~V 388 (648)
+++..+++....+.-+..-.+.||.+|-.+
T Consensus 90 ErL~~~D~~~~~~sY~Iieg~lp~~~y~at 119 (183)
T 3rt2_A 90 EVLEILDDNEHILGIRIVGGDHRLKNYSST 119 (183)
T ss_dssp EEEEEEETTTTEEEEEEEEESCSCTTCEEE
T ss_pred EEEEEEECCCCEEEEEEecCCcceeEEEEE
Confidence 777666653211111112237899886544
No 91
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=20.26 E-value=96 Score=23.94 Aligned_cols=51 Identities=12% Similarity=0.199 Sum_probs=32.6
Q ss_pred CCcccCCCcccCCCCCCccchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006377 583 PPDYMGAGVGVGLGQRSAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQ 643 (648)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (648)
|.++-+-.-..+..||+.+-|.+.-. .+...++.|.+|...||.++++|+.
T Consensus 5 p~dI~~k~F~~~~rGY~~~EVD~FLd----------~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 5 PNDIHNKTFTKSFRGYDEDEVNEFLA----------QVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHTTCCCCEETTEEEHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHhhCcCCCCCCCcCHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333334555888887765433 3567888999999999999988864
Done!