BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006378
(647 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2L5E|A Chain A, Complex Between Bd1 Of Brd3 And Gata-1 C-Tail
Length = 128
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 289 IEIIRSHKFG-SFFERLDATK-ETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDX 346
++ + H+F F++ +DA K PDY I++ D+ TI+ RLE N+Y S S D
Sbjct: 28 VKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYY-WSASECMQDF 86
Query: 347 XXXFNNVIVFFDKNSSESAAAVELRQIVLKAMTR 380
F N ++ A L +I L+ + +
Sbjct: 87 NTMFTNCYIYNKPTDDIVLMAQALEKIFLQKVAQ 120
>pdb|2YW5|A Chain A, Solution Structure Of The Bromodomain From Human
Bromodomain Containing Protein 3
Length = 138
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 289 IEIIRSHKFG-SFFERLDATK-ETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDX 346
++ + H+F F++ +DA K PDY I++ D+ TI+ RLE N+Y S S D
Sbjct: 30 VKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYY-WSASECMQDF 88
Query: 347 XXXFNNVIVFFDKNSSESAAAVELRQIVLKAMTR 380
F N ++ A L +I L+ + +
Sbjct: 89 NTMFTNCYIYNKPTDDIVLMAQALEKIFLQKVAQ 122
>pdb|2NXB|A Chain A, Crystal Structure Of Human Bromodomain Containing Protein
3 (Brd3)
pdb|2NXB|B Chain B, Crystal Structure Of Human Bromodomain Containing Protein
3 (Brd3)
pdb|3S91|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd3
In Complex With The Inhibitor Jq1
Length = 123
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 289 IEIIRSHKFG-SFFERLDATK-ETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDX 346
++ + H+F F++ +DA K PDY I++ D+ TI+ RLE N+Y S S D
Sbjct: 26 VKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYY-WSASECMQDF 84
Query: 347 XXXFNNVIVFFDKNSSESAAAVELRQIVLKAMTR 380
F N ++ A L +I L+ + +
Sbjct: 85 NTMFTNCYIYNKPTDDIVLMAQALEKIFLQKVAQ 118
>pdb|2YDW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YEK|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|4AKN|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
Length = 153
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 295 HKFG-SFFERLDATK-ETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDXXXXFNN 352
H+F F + +DA K PDY I++Q D+ TI+ RLE N+Y + S D F N
Sbjct: 47 HQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAA-SECMQDFNTMFTN 105
Query: 353 VIVFFDKNSSESAAAVELRQIVLK 376
++ A L +I L+
Sbjct: 106 CYIYNKPTDDIVLMAQTLEKIFLQ 129
>pdb|4A9E|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9E|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9E|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9F|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9H|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9I|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9I|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9I|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9J|A Chain A, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|B Chain B, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|C Chain C, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9M|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9O|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4A9O|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4A9O|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4ALH|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALG|A Chain A, N-Terminal Bromodomain Of Human Brd2 With Ibet-151
Length = 154
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 295 HKFG-SFFERLDATK-ETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDXXXXFNN 352
H+F F + +DA K PDY I++Q D+ TI+ RLE N+Y + S D F N
Sbjct: 47 HQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAA-SECMQDFNTMFTN 105
Query: 353 VIVFFDKNSSESAAAVELRQIVLK 376
++ A L +I L+
Sbjct: 106 CYIYNKPTDDIVLMAQTLEKIFLQ 129
>pdb|3G0J|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3G0J|B Chain B, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3MB4|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1) With Nmp
pdb|3MB4|B Chain B, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1) With Nmp
Length = 124
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 7/112 (6%)
Query: 271 SPAATKRICAESRPLVECIEII------RSHKFGSFFERLDATKETPDYRSIVRQHTDLE 324
SP +K + + L E E + R + + F RL + E PDY +++ D+E
Sbjct: 6 SPKKSKYMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDME 65
Query: 325 TIRTRLEENWYSGSNSSFFHDXXXXFNNVIVFFDKNSSESAAAVELRQIVLK 376
IR+ + N Y + S D FNN + + S A+ L +++L+
Sbjct: 66 KIRSHMMANKYQDID-SMVEDFVMMFNNACTYNEPESLIYKDALVLHKVLLE 116
>pdb|2RFJ|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|B Chain B, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|C Chain C, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|4FLP|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brdt
In Complex With The Inhibitor Jq1
pdb|4FLP|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brdt
In Complex With The Inhibitor Jq1
Length = 119
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 295 HKFGSFFER-LDATK-ETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDXXXXFNN 352
H F F+R +DA K + PDY +I++ DL TI+ RLE +Y+ + S D F+N
Sbjct: 28 HSFSWPFQRPVDAVKLQLPDYYTIIKNPMDLNTIKKRLENKYYAKA-SECIEDFNTMFSN 86
Query: 353 VIVFFDKNSSESAAAVELRQIVLKAMTR 380
++ A L ++ ++ +++
Sbjct: 87 CYLYNKPGDDIVLMAQALEKLFMQKLSQ 114
>pdb|1X0J|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|1X0J|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|1X0J|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|2DVQ|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVQ|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVQ|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
Length = 122
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 295 HKFG-SFFERLDATK-ETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDXXXXFNN 352
H+F F + +DA K PDY I++Q D TI+ RLE N+Y + S D F N
Sbjct: 21 HQFAWPFRQPVDAVKLGLPDYHKIIKQPXDXGTIKRRLENNYYWAA-SECXQDFNTXFTN 79
Query: 353 VIVFFDKNSSESAAAVELRQIVLK 376
++ A L +I L+
Sbjct: 80 CYIYNKPTDDIVLXAQTLEKIFLQ 103
>pdb|2YQD|A Chain A, Solution Structure Of The Fifth Bromodomain From Mouse
Polybromo-1
Length = 120
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 293 RSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDXXXXFNN 352
R + + F RL + E PDY +++ D+E IR+ + N Y + S D FNN
Sbjct: 34 RGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDID-SMVEDFVMMFNN 92
Query: 353 VIVFFDKNSSESAAAVELRQIVLK 376
+ + S A+ L +++L+
Sbjct: 93 ACTYNEPESLIYKDALVLHKVLLE 116
>pdb|3AQA|A Chain A, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
pdb|3AQA|B Chain B, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
pdb|3AQA|C Chain C, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
Length = 128
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 295 HKFG-SFFERLDATK-ETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDXXXXFNN 352
H+F F + +DA K PDY I++Q D TI+ RLE N+Y + S D F N
Sbjct: 27 HQFAWPFRQPVDAVKLGLPDYHKIIKQPXDXGTIKRRLENNYYWAA-SECXQDFNTXFTN 85
Query: 353 VIVFFDKNSSESAAAVELRQIVLK 376
++ A L +I L+
Sbjct: 86 CYIYNKPTDDIVLXAQTLEKIFLQ 109
>pdb|4DON|A Chain A, Brd4 Bromodomain 1 Complex With A Fragment
3,4-dihydro-3-methyl-2(1h)- Quinazolinon
Length = 145
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 271 SPAATKRICAESRPLVECI-EIIRSHKFGSFFER-LDATK-ETPDYRSIVRQHTDLETIR 327
+P KR + + L+ + + + H+F F++ +DA K PDY I++ D+ TI+
Sbjct: 31 NPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIK 90
Query: 328 TRLEENWYSGSNSSFFHDXXXXFNNVIVF 356
RLE N+Y + D F N ++
Sbjct: 91 KRLENNYYWNAQEC-IQDFNTMFTNCYIY 118
>pdb|3JVJ|A Chain A, Crystal Structure Of The Bromodomain 1 In Mouse Brd4
pdb|3JVK|A Chain A, Crystal Structure Of Bromodomain 1 Of Mouse Brd4 In
Complex With Histone H3-K(Ac)14
pdb|3MUK|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Propionylated
Histone H3- K(Prop)23
pdb|3MUL|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Butyrylated
Histone H3- K(Buty)14
Length = 131
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 271 SPAATKRICAESRPLVECI-EIIRSHKFGSFFER-LDATK-ETPDYRSIVRQHTDLETIR 327
+P KR + + L+ + + + H+F F++ +DA K PDY I++ D+ TI+
Sbjct: 15 NPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIK 74
Query: 328 TRLEENWYSGSNSSFFHDXXXXFNNVIVF 356
RLE N+Y + D F N ++
Sbjct: 75 KRLENNYYWNAQEC-IQDFNTMFTNCYIY 102
>pdb|2OSS|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein 4 (Brd4)
pdb|3MXF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With The Inhibitor Jq1
pdb|3P5O|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Ibet Inhibitor
pdb|2YEL|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|3SVF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Dihydro-Quinazolin Ligand
pdb|3SVG|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3ZYU|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With I-Bet151(Gsk1210151a)
pdb|3ZYU|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With I-Bet151(Gsk1210151a)
pdb|3U5J|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Alprazolam
pdb|3U5K|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5L|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Benzo-Triazepine Ligand (Bzt-7)
pdb|4A9L|A Chain A, N-Terminal Bromodomain Of Human Brd4 With 1,3-Dimethyl-6-(
Morpholine-4-Sulfonyl)-1,2,3,
4-Tetrahydroquinazolin-2-One
pdb|3UVW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k5ack8ac)
pdb|3UVY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k16ack20ac)
pdb|3UVX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k12ack16ac)
pdb|3UW9|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|4E96|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With The Inhibitor Pfi-1
pdb|4F3I|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Ms417 Inhibitor
pdb|4GPJ|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Isoxazolylbenzimidazole Ligand
pdb|4HBV|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4HBX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4HBY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4J0R|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-dimethylisoxazol Ligand
pdb|4J0S|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-dimethylisoxazol Ligand
Length = 127
Score = 37.4 bits (85), Expect = 0.027, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 271 SPAATKRICAESRPLVECI-EIIRSHKFGSFFER-LDATK-ETPDYRSIVRQHTDLETIR 327
+P KR + + L+ + + + H+F F++ +DA K PDY I++ D+ TI+
Sbjct: 11 NPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIK 70
Query: 328 TRLEENWYSGSNSSFFHDXXXXFNNVIVF 356
RLE N+Y + D F N ++
Sbjct: 71 KRLENNYYWNAQEC-IQDFNTMFTNCYIY 98
>pdb|4HBW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazoline Ligand
Length = 127
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 289 IEIIRSHKFGSFFER-LDATK-ETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDX 346
++ + H+F F++ +DA K PDY I++ D+ TI+ RLE N+Y + D
Sbjct: 30 LKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQEC-IQDF 88
Query: 347 XXXFNNVIVF 356
F N ++
Sbjct: 89 NTMFTNCYIY 98
>pdb|1E6I|A Chain A, Bromodomain From Gcn5 Complexed With Acetylated H4 Peptide
Length = 121
Score = 37.0 bits (84), Expect = 0.036, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 308 KETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDXXXXFNNVIVFFDKNSS 362
+E PDY +++ DL T+ +LE N Y F +D FNN ++ +N+S
Sbjct: 41 EEVPDYYDFIKEPMDLSTMEIKLESNKYQ-KMEDFIYDARLVFNNCRMYNGENTS 94
>pdb|2WP2|A Chain A, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide.
pdb|2WP2|B Chain B, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide
Length = 120
Score = 36.6 bits (83), Expect = 0.044, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 295 HKFGSFFER-LDATK-ETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDXXXXFNN 352
H F F++ +DA K + PDY +I++ DL TI+ RLE +Y + S D F+N
Sbjct: 29 HGFSWPFQQPVDAVKLKLPDYYTIIKTPMDLNTIKKRLENKYYEKA-SECIEDFNTMFSN 87
Query: 353 VIVFFDKNSSESAAAVELRQIVLKAMTR 380
++ A L ++ ++ +++
Sbjct: 88 CYLYNKTGDDIVVMAQALEKLFMQKLSQ 115
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
Length = 184
Score = 35.8 bits (81), Expect = 0.072, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 311 PDYRSIVRQHTDLETIRTRLEENWYSGSN-SSFFHDXXXXFNNVIVFFDKNSSESAAAVE 369
PDY I++ DL TI+ RL+E++ S F D F N F + +S + A ++
Sbjct: 111 PDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVANAGIK 170
Query: 370 L 370
L
Sbjct: 171 L 171
>pdb|2YYN|A Chain A, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|B Chain B, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|C Chain C, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|D Chain D, Crystal Sturcture Of Human Bromodomain Protein
Length = 135
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 311 PDYRSIVRQHTDLETIRTRLEENWYSGSN-SSFFHDXXXXFNNVIVFFDKNSSESAAAVE 369
PDY I++ DL TI+ RL+E++ S F D F N F + +S + A ++
Sbjct: 50 PDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVANAGIK 109
Query: 370 L 370
L
Sbjct: 110 L 110
>pdb|3HMH|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Tbp-Associated Factor Rna Polymerase 1-Like (Taf1l)
Length = 155
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 308 KETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDXXXXFNNVIVFFDKNSSESAAA 367
K PDY ++ DLETIR + ++ Y S SF D N + + S + A
Sbjct: 55 KFVPDYYKMIVNPVDLETIRKNISKHKYQ-SRESFLDDVNLILANSVKYNGPESQYTKTA 113
Query: 368 VELRQIVLKAMT 379
E+ I + +T
Sbjct: 114 QEIVNICYQTIT 125
>pdb|3UV4|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
pdb|3UV4|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 158
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 308 KETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDXXXXFNNVIVFFDKNSSESAAA 367
K PDY ++ DLETIR + ++ Y S SF D N + + S + A
Sbjct: 58 KFVPDYYKVIVNPMDLETIRKNISKHKYQ-SRESFLDDVNLILANSVKYNGPESQYTKTA 116
Query: 368 VELRQIVLKAMT 379
E+ + + +T
Sbjct: 117 QEIVNVCYQTLT 128
>pdb|3FKM|X Chain X, Plasmodium Falciparum Bromodomain-Containing Protein
Pf10_0328
Length = 166
Score = 33.1 bits (74), Expect = 0.45, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 298 GSFFERL-DATKET-PDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDXXXXFNNVIV 355
G FE+L DA K+ PDY +++ I+T+L++ Y+ S F D F+N +
Sbjct: 39 GHIFEKLVDAKKQNCPDYYDVIKNPXSFSCIKTKLKKGQYA-YPSEFVKDVQLIFDNCSL 97
Query: 356 FFDKNSSESAAAVELRQI 373
+ N+S S A+ + I
Sbjct: 98 Y---NTSNSVVAITGKNI 112
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With
Histone H4k12ac Peptide
Length = 174
Score = 32.7 bits (73), Expect = 0.60, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 292 IRSHKFG-SFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDXXXXF 350
+++HK F E +D + PDY ++++ DL T+ R++ +Y + F D F
Sbjct: 84 LQAHKMAWPFLEPVDPN-DAPDYYGVIKEPMDLATMEERVQRRYYE-KLTEFVADMTKIF 141
Query: 351 NN 352
+N
Sbjct: 142 DN 143
>pdb|3QZS|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
pdb|3QZS|B Chain B, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
Length = 115
Score = 32.3 bits (72), Expect = 0.74, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 292 IRSHKFG-SFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDXXXXF 350
+++HK F E +D + PDY ++++ DL T+ R++ +Y + F D F
Sbjct: 25 LQAHKMAWPFLEPVDPN-DAPDYYGVIKEPMDLATMEERVQRRYYE-KLTEFVADMTAIF 82
Query: 351 NN 352
+N
Sbjct: 83 DN 84
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e
Mutant From Human Bptf In The H3(1-9)k4me2 Bound State
Length = 174
Score = 32.3 bits (72), Expect = 0.75, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 292 IRSHKFG-SFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDXXXXF 350
+++HK F E +D + PDY ++++ DL T+ R++ +Y + F D F
Sbjct: 84 LQAHKMAWPFLEPVDPN-DAPDYYGVIKEPMDLATMEERVQRRYYE-KLTEFVADMTKIF 141
Query: 351 NN 352
+N
Sbjct: 142 DN 143
>pdb|3QZT|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form Ii
Length = 115
Score = 32.3 bits (72), Expect = 0.76, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 292 IRSHKFG-SFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDXXXXF 350
+++HK F E +D + PDY ++++ DL T+ R++ +Y + F D F
Sbjct: 25 LQAHKMAWPFLEPVDPN-DAPDYYGVIKEPMDLATMEERVQRRYYE-KLTEFVADMTKIF 82
Query: 351 NN 352
+N
Sbjct: 83 DN 84
>pdb|3AAD|A Chain A, Structure Of The Histone Chaperone Cia/asf1-double
Bromodomain Complex Linking Histone Modifications And
Site-specific Histone Eviction
Length = 292
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 308 KETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDXXXXFNNVIVFFDKNSSESAAA 367
K PDY ++ DLETIR + ++ Y S SF D N + + S + A
Sbjct: 198 KFVPDYYKVIVNPMDLETIRKNISKHKYQ-SRESFLDDVNLILANSVKYNGPESQYTKTA 256
Query: 368 VELRQIVLKAMT 379
E+ + + +T
Sbjct: 257 QEIVNVCYQTLT 268
>pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From
Human Tafii250
Length = 280
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 308 KETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDXXXXFNNVIVFFDKNSSESAAA 367
K PDY ++ DLETIR + ++ Y S SF D N + + S + A
Sbjct: 177 KFVPDYYKVIVNPMDLETIRKNISKHKYQ-SRESFLDDVNLILANSVKYNGPESQYTKTA 235
Query: 368 VELRQIVLKAMT 379
E+ + + +T
Sbjct: 236 QEIVNVCYQTLT 247
>pdb|3RCW|A Chain A, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|B Chain B, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|C Chain C, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|D Chain D, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|E Chain E, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|F Chain F, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|G Chain G, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|H Chain H, Crystal Structure Of The Bromodomain Of Human Brd1
Length = 135
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 301 FERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDXXXXFNNVIVFFDKN 360
F + + KE PDY ++ D T+R RLE Y + F D +N + + ++
Sbjct: 34 FAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLH-EFEEDFDLIIDNCMKYNARD 92
Query: 361 SSESAAAVELRQ---IVLKAMTR 380
+ AAV LR +VL+ R
Sbjct: 93 TVFYRAAVRLRDQGGVVLRQARR 115
>pdb|3UV5|A Chain A, Crystal Structure Of The Tandem Bromodomains Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 265
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 308 KETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDXXXXFNNVIVFFDKNSSESAAA 367
K PDY ++ DLETIR + ++ Y S SF D N + + S + A
Sbjct: 165 KFVPDYYKVIVNPMDLETIRKNISKHKYQ-SRESFLDDVNLILANSVKYNGPESQYTKTA 223
Query: 368 VELRQIVLKAMT 379
E+ + + +T
Sbjct: 224 QEIVNVCYQTLT 235
>pdb|3HMF|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 271 SPAATKRICAESRPLVECIEIIRSHK---FGSFFERLDATKETPDYRSIVRQHTDLETIR 327
SPA K I + L+E I + + F++L + + PDY +I+++ DL+TI
Sbjct: 3 SPAYLKEILEQ---LLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIA 59
Query: 328 TRLEENWY 335
R++ Y
Sbjct: 60 QRIQNGSY 67
>pdb|3LJW|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
pdb|3LJW|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
Length = 120
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 271 SPAATKRICAESRPLVECIEIIRSHK---FGSFFERLDATKETPDYRSIVRQHTDLETIR 327
SPA K I + L+E I + + F++L + + PDY +I+++ DL+TI
Sbjct: 5 SPAYLKEILEQ---LLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIA 61
Query: 328 TRLEENWY 335
R++ Y
Sbjct: 62 QRIQNGSY 69
>pdb|3UV2|A Chain A, Crystal Structure Of The Bromodomain Of Human
Nucleosome-Remodeling Factor Subunit Bptf
Length = 126
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 292 IRSHKFG-SFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDXXXXF 350
+++HK F E +D + PDY ++++ DL T+ R++ +Y + F D F
Sbjct: 32 LQAHKMAWPFLEPVDPN-DAPDYYGVIKEPMDLATMEERVQRRYYE-KLTEFVADMTKIF 89
Query: 351 NN 352
+N
Sbjct: 90 DN 91
>pdb|1XG1|A Chain A, Solution Structure Of Myb-Domain Of Human Trf2
Length = 67
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 1 MDNPSNNFPEKQAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKY 60
M++ + N +KQ W +E + V +YG NW +++ ++ F T + + ++
Sbjct: 4 MEDSTTNITKKQKWTVEESEWVKAGVQKYGEGNWAAIS-----KNYPFVNRTAVMIKDRW 58
Query: 61 NDLKR 65
+KR
Sbjct: 59 RTMKR 63
>pdb|1VF9|A Chain A, Solution Structure Of Human Trf2
Length = 64
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 1 MDNPSNNFPEKQAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKY 60
M++ + N +KQ W +E + V +YG NW +++ ++ F T + + ++
Sbjct: 1 MEDSTTNITKKQKWTVEESEWVKAGVQKYGEGNWAAIS-----KNYPFVNRTAVMIKDRW 55
Query: 61 NDLKR 65
+KR
Sbjct: 56 RTMKR 60
>pdb|2KTB|B Chain B, Solution Structure Of The Second Bromodomain Of Human
Polybr Complex With An Acetylated Peptide From Histone 3
Length = 121
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 271 SPAATKRICAESRPLVECIEIIRSHK---FGSFFERLDATKETPDYRSIVRQHTDLETIR 327
SPA K I + L+E I + + F++L + + PDY +I+++ DL+TI
Sbjct: 6 SPAYLKEILEQ---LLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIA 62
Query: 328 TRLEENWY 335
R++ Y
Sbjct: 63 QRIQNGSY 70
>pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6N|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2F6N|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2FSA|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
Length = 174
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 292 IRSHKFG-SFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDXXXXF 350
+++HK F E +D + PDY ++++ DL T R++ +Y + F D F
Sbjct: 84 LQAHKXAWPFLEPVDPN-DAPDYYGVIKEPXDLATXEERVQRRYYE-KLTEFVADXTKIF 141
Query: 351 NN 352
+N
Sbjct: 142 DN 143
>pdb|2E7O|A Chain A, Solution Structure Of The Bromodomain From Human
Bromodomain Adjacent To Zinc Finger Domain 2b
Length = 112
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 308 KETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDXXXXFNNVIVFFDKNSSESAAA 367
K P Y+ ++++ D TIR +L Y + +F D F+N F + +S A
Sbjct: 38 KLVPGYKKVIKKPMDFSTIREKLSSGQYP-NLETFALDVRLVFDNCETFNEDDSDIGRAG 96
Query: 368 VELRQIVLKAMTRNTF 383
+R+ K T +TF
Sbjct: 97 HNMRKYFEKKWT-DTF 111
>pdb|3UVD|A Chain A, Crystal Structure Of The Bromodomain Of Human
Transcription Activator Brg1 (Smarca4) In Complex With
N-Methyl-2-Pyrrolidone
Length = 124
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 296 KFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSN 339
+ F +L + KE P+Y ++R+ D + I+ R+ + Y N
Sbjct: 35 QLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLN 78
>pdb|2GRC|A Chain A, 1.5 A Structure Of Bromodomain From Human Brg1 Protein, A
Central Atpase Of SwiSNF REMODELING COMPLEX
Length = 129
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 296 KFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSN 339
+ F +L + KE P+Y ++R+ D + I+ R+ + Y N
Sbjct: 34 QLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLN 77
>pdb|3GG3|A Chain A, Crystal Structure Of The Bromodomain Of Human Pcaf
pdb|3GG3|B Chain B, Crystal Structure Of The Bromodomain Of Human Pcaf
Length = 119
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 289 IEIIRSHKFG-SFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDXX 347
++ ++SH+ F E + T E P Y ++R DL+T+ RL+ +Y S F D
Sbjct: 24 LQQVKSHQSAWPFMEPVKRT-EAPGYYEVIRFPMDLKTMSERLKNRYYV-SKKLFMADLQ 81
Query: 348 XXFNN 352
F N
Sbjct: 82 RVFTN 86
>pdb|2H60|A Chain A, Solution Structure Of Human Brg1 Bromodomain
Length = 128
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 296 KFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSN 339
+ F +L + KE P+Y ++R+ D + I+ R+ + Y N
Sbjct: 30 QLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLN 73
>pdb|1F68|A Chain A, Nmr Solution Structure Of The Bromodomain From Human Gcn5
Length = 103
Score = 29.6 bits (65), Expect = 4.9, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 292 IRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWY 335
I+SH F E PDY ++R DL+T+ RL +Y
Sbjct: 15 IKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYY 58
>pdb|3D7C|A Chain A, Crystal Structure Of The Bromodomain Of Human Gcn5, The
General Control Of Amino-Acid Synthesis Protein 5-Like 2
pdb|3D7C|B Chain B, Crystal Structure Of The Bromodomain Of Human Gcn5, The
General Control Of Amino-Acid Synthesis Protein 5-Like 2
Length = 112
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 292 IRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWY 335
I+SH F E PDY ++R DL+T+ RL +Y
Sbjct: 19 IKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYY 62
>pdb|1N72|A Chain A, Structure And Ligand Of A Histone Acetyltransferase
Bromodomain
pdb|1JM4|B Chain B, Nmr Structure Of PCAF BROMODOMAIN IN COMPLEX WITH HIV-1
Tat Peptide
pdb|1WUG|A Chain A, Complex Structure Of Pcaf Bromodomain With Small Chemical
Ligand Np1
pdb|1WUM|A Chain A, Complex Structure Of Pcaf Bromodomain With Small Chemical
Ligand Np2
pdb|1ZS5|A Chain A, Structure-Based Evaluation Of Selective And Non-Selective
Small Molecules That Block Hiv-1 Tat And Pcaf
Association
pdb|2RNW|A Chain A, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
pdb|2RNX|A Chain A, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
Length = 118
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 289 IEIIRSHKFG-SFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDXX 347
++ ++SH+ F E + T E P Y ++R DL+T+ RL+ +Y S F D
Sbjct: 22 LQQVKSHQSAWPFMEPVKRT-EAPGYYEVIRFPMDLKTMSERLKNRYYV-SKKLFMADLQ 79
Query: 348 XXFNN 352
F N
Sbjct: 80 RVFTN 84
>pdb|1JSP|B Chain B, Nmr Structure Of Cbp Bromodomain In Complex With P53
Peptide
pdb|2D82|A Chain A, Target Structure-Based Discovery Of Small Molecules That
Block Human P53 And Creb Binding Protein (Cbp)
Association
pdb|2RNY|A Chain A, Complex Structures Of Cbp Bromodomain With H4 Ack20
Peptide
pdb|2L84|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule J28
pdb|2L85|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule Of Hbs
Length = 121
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 311 PDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDXXXXFNNVIVFFDKNS 361
PDY IV+ DL TI+ +L+ Y + D FNN ++ K S
Sbjct: 47 PDYFDIVKNPMDLSTIKRKLDTGQYQ-EPWQYVDDVWLMFNNAWLYNRKTS 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.125 0.340
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,032,578
Number of Sequences: 62578
Number of extensions: 438548
Number of successful extensions: 825
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 783
Number of HSP's gapped (non-prelim): 60
length of query: 647
length of database: 14,973,337
effective HSP length: 105
effective length of query: 542
effective length of database: 8,402,647
effective search space: 4554234674
effective search space used: 4554234674
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)