BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006378
(647 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9H0E9|BRD8_HUMAN Bromodomain-containing protein 8 OS=Homo sapiens GN=BRD8 PE=1 SV=2
Length = 1235
Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 54/97 (55%), Gaps = 7/97 (7%)
Query: 285 LVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSG---SNSS 341
L+ ++I SH+F S F + + ++ P Y+ +V++ DL T L+ N G + +
Sbjct: 1112 LLPVWKMIASHRFSSPFLKPVSERQAPGYKDVVKRPMDL----TSLKRNLSKGRIRTMAQ 1167
Query: 342 FFHDLLLLFNNVIVFFDKNSSESAAAVELRQIVLKAM 378
F DL+L+F N +++ D + AVE+RQ VL+ +
Sbjct: 1168 FLRDLMLMFQNAVMYNDSDHHVYHMAVEMRQEVLEQI 1204
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 13/120 (10%)
Query: 271 SPAATK-RICAESRPLVECIEIIR-----------SHKFGSFFERLDATKETPDYRSIVR 318
SPA+++ +C+E + ++ +I + +H++ + F + P Y SIV+
Sbjct: 690 SPASSQFSVCSEDQEAIQAQKIWKKAIMLVWRAAANHRYANVFLQPVTDDIAPGYHSIVQ 749
Query: 319 QHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNSSESAAAVELRQIVLKAM 378
+ DL TI+ +E N S + F D++L+F N +++ + AVE+++ VL+ +
Sbjct: 750 RPMDLSTIKKNIE-NGLIRSTAEFQRDIMLMFQNAVMYNSSDHDVYHMAVEMQRDVLEQI 808
Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 12 QAWGTKEELLLACAVHRYGTQNWISVA 38
+ W +E+L LA +V R G QNW+SV+
Sbjct: 17 EPWSIREKLCLASSVMRSGDQNWVSVS 43
>sp|P13709|FSH_DROME Homeotic protein female sterile OS=Drosophila melanogaster
GN=fs(1)h PE=1 SV=2
Length = 2038
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 21/137 (15%)
Query: 256 SEEPEEVEPGI----GEDQSPAATKRICAESRP---------LVECI-EIIRSHKFGSFF 301
SE P EP + G Q P I RP L++ + ++I H F F
Sbjct: 4 SEPPPRYEPPVEPVNGIVQPPV----IPPAERPGRNTNQLQYLIKTVMKVIWKHHFSWPF 59
Query: 302 ER-LDATK-ETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDK 359
++ +DA K PDY I++Q D+ TI+ RLE N+Y + + D +FNN V+
Sbjct: 60 QQPVDAKKLNLPDYHKIIKQPMDMGTIKKRLENNYYWSAKET-IQDFNTMFNNCYVYNKP 118
Query: 360 NSSESAAAVELRQIVLK 376
A L ++ L+
Sbjct: 119 GEDVVVMAQTLEKVFLQ 135
>sp|Q15059|BRD3_HUMAN Bromodomain-containing protein 3 OS=Homo sapiens GN=BRD3 PE=1 SV=1
Length = 726
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 288 CIEIIRSHKFG-SFFERLDATK-ETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHD 345
++ + H+F F++ +DA K PDY I++ D+ TI+ RLE N+Y S S D
Sbjct: 46 VVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYY-WSASECMQD 104
Query: 346 LLLLFNNVIVFFDKNSSESAAAVELRQIVLK 376
+F N ++ A L +I L+
Sbjct: 105 FNTMFTNCYIYNKPTDDIVLMAQALEKIFLQ 135
>sp|Q8K2F0|BRD3_MOUSE Bromodomain-containing protein 3 OS=Mus musculus GN=Brd3 PE=1 SV=2
Length = 726
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 288 CIEIIRSHKFG-SFFERLDATK-ETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHD 345
++ + H+F F++ +DA K PDY I++ D+ TI+ RLE N+Y S S D
Sbjct: 45 VVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYY-WSASECMQD 103
Query: 346 LLLLFNNVIVFFDKNSSESAAAVELRQIVLK 376
+F N ++ A L +I L+
Sbjct: 104 FNTMFTNCYIYNKPTDDIVLMAQALEKIFLQ 134
>sp|Q8R3B7|BRD8_MOUSE Bromodomain-containing protein 8 OS=Mus musculus GN=Brd8 PE=1 SV=2
Length = 951
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 13/120 (10%)
Query: 271 SPAATK-RICAESRPLVECIEIIR-----------SHKFGSFFERLDATKETPDYRSIVR 318
SPA+++ +C+E + ++ +I + +H++ + F + P Y SIV+
Sbjct: 763 SPASSQFSVCSEDQEAIQAQKIWKKAIMLVWRAAANHRYANVFLQPVTDDIAPGYHSIVQ 822
Query: 319 QHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNSSESAAAVELRQIVLKAM 378
+ DL TI+ +E N S + F D++L+F N +++ + AVE+++ VL+ +
Sbjct: 823 RPMDLSTIKKNIE-NGLIRSTAEFQRDIMLMFQNAVMYNSSDHDVYHMAVEMQRDVLEQI 881
Score = 35.8 bits (81), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 12 QAWGTKEELLLACAVHRYGTQNWISVA 38
+ W +E+L LA +V R G QNW+SV+
Sbjct: 17 EPWSIREKLCLASSVMRSGDQNWVSVS 43
>sp|Q86U86|PB1_HUMAN Protein polybromo-1 OS=Homo sapiens GN=PBRM1 PE=1 SV=1
Length = 1689
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 271 SPAATKRICAESRPLVECIEIIRSH------KFGSFFERLDATKETPDYRSIVRQHTDLE 324
SP +K + + L E E ++++ + + F RL + E PDY +++ D+E
Sbjct: 648 SPKKSKYMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDME 707
Query: 325 TIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNSSESAAAVELRQIVL 375
IR+ + N Y + S D +++FNN + + S A+ L +++L
Sbjct: 708 KIRSHMMANKYQDID-SMVEDFVMMFNNACTYNEPESLIYKDALVLHKVLL 757
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 49/109 (44%), Gaps = 12/109 (11%)
Query: 284 PLVECIEI---IRSHK------FGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENW 334
P+ C E+ IR +K F R + PDY +V Q DL I+ +L+
Sbjct: 46 PIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEE 105
Query: 335 YSGSNSSFFHDLLLLFNNVIVFFDKNSSESAAAVELRQIVLKAMTRNTF 383
Y N D LLFNN ++ +S E AA +L + L+ TRN F
Sbjct: 106 YDDVNL-LTADFQLLFNNAKSYYKPDSPEYKAACKLWDLYLR--TRNEF 151
Score = 36.6 bits (83), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 266 IGEDQSPAATKRICAESRPLVECIEIIRSHKFG----SFFERLDATKETPDYRSIVRQHT 321
+ E SPA K I + L+E I ++ ++ G F++L + + PDY +I+++
Sbjct: 173 VTEGSSPAYLKEILEQ---LLEAI-VVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPI 228
Query: 322 DLETIRTRLEENWY 335
DL+TI R++ Y
Sbjct: 229 DLKTIAQRIQNGSY 242
Score = 34.3 bits (77), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 282 SRPLVECIEIIRSHK------FGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWY 335
S P + + +RS + F L + K+ PDY ++ L+ IRT+L+ Y
Sbjct: 383 SNPFYQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEY 442
Query: 336 SGSNSSFFHDLLLLFNNVIVFFDKNSSESAAAVELRQIV 374
+ DL L+F N + NS+ ++L+Q++
Sbjct: 443 ETLD-HLECDLNLMFENAKRYNVPNSAIYKRVLKLQQVM 480
>sp|Q90941|PB1_CHICK Protein polybromo-1 OS=Gallus gallus GN=PBRM1 PE=1 SV=1
Length = 1633
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 271 SPAATKRICAESRPLVECIEIIRSH------KFGSFFERLDATKETPDYRSIVRQHTDLE 324
SP +K + + L E E ++++ + + F RL + E PDY +++ D+E
Sbjct: 646 SPKKSKYMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYITIKKPVDME 705
Query: 325 TIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNSSESAAAVELRQIVL 375
IR+ + N Y + S D +++FNN + + S A+ L +++L
Sbjct: 706 KIRSHMMANKYQDID-SMVEDFVMMFNNACTYNEPESLIYKDALVLHKVLL 755
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 12/109 (11%)
Query: 284 PLVECIEI---IRSHK------FGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENW 334
P+ C E+ IR +K F R + PDY +V Q DL I+ +L+
Sbjct: 47 PIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEE 106
Query: 335 YSGSNSSFFHDLLLLFNNVIVFFDKNSSESAAAVELRQIVLKAMTRNTF 383
Y N D LLFNN ++ +S E AA +L ++ L+ T+N F
Sbjct: 107 YDDVNV-LTADFQLLFNNAKAYYKPDSPEYKAACKLWELYLR--TKNEF 152
Score = 33.1 bits (74), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 300 FFERLDATKETPDYRSIVRQHTDLETIRTRLEENWY 335
F++L + + PDY +I+++ DL+TI R++ Y
Sbjct: 204 LFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGTY 239
>sp|Q8BSQ9|PB1_MOUSE Protein polybromo-1 OS=Mus musculus GN=Pbrm1 PE=1 SV=4
Length = 1634
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 271 SPAATKRICAESRPLVECIEIIRSH------KFGSFFERLDATKETPDYRSIVRQHTDLE 324
SP +K + + L E E ++++ + + F RL + E PDY +++ D+E
Sbjct: 648 SPKKSKYMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDME 707
Query: 325 TIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNSSESAAAVELRQIVL 375
IR+ + N Y + S D +++FNN + + S A+ L +++L
Sbjct: 708 KIRSHMMANKYQDID-SMVEDFVMMFNNACTYNEPESLIYKDALVLHKVLL 757
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 49/109 (44%), Gaps = 12/109 (11%)
Query: 284 PLVECIEI---IRSHK------FGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENW 334
P+ C E+ IR +K F R + PDY +V Q DL I+ +L+
Sbjct: 46 PIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEE 105
Query: 335 YSGSNSSFFHDLLLLFNNVIVFFDKNSSESAAAVELRQIVLKAMTRNTF 383
Y N D LLFNN ++ +S E AA +L + L+ TRN F
Sbjct: 106 YDDVNL-LTADFQLLFNNAKAYYKPDSPEYKAACKLWDLYLR--TRNEF 151
Score = 33.9 bits (76), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 17/130 (13%)
Query: 266 IGEDQSPAATKRICAESRPLVECIEIIRSHKFG----SFFERLDATKETPDYRSIVRQHT 321
+ + SP K I + L+E I ++ ++ G F++L + + PDY +I+++
Sbjct: 173 LADGSSPGYLKEILEQ---LLEAI-VVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPI 228
Query: 322 DLETIRTRLEENWYSGSNSSFFHDLLLLFNNV--------IVFFDKNSSESAAAVELRQI 373
DL+TI R++ Y S + D+ LL N VF D NS + ++ +I
Sbjct: 229 DLKTIAQRIQNGSYK-SIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIFYMKKAEI 287
Query: 374 VLKAMTRNTF 383
MT+++
Sbjct: 288 EHHEMTKSSL 297
>sp|Q58F21|BRDT_HUMAN Bromodomain testis-specific protein OS=Homo sapiens GN=BRDT PE=1
SV=4
Length = 947
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 295 HKFGSFFER-LDATK-ETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNN 352
H F F+R +DA K + PDY +I++ DL TI+ RLE +Y+ + S D +F+N
Sbjct: 46 HSFSWPFQRPVDAVKLQLPDYYTIIKNPMDLNTIKKRLENKYYAKA-SECIEDFNTMFSN 104
Query: 353 VIVF 356
++
Sbjct: 105 CYLY 108
>sp|F7DRV9|BRDT_XENTR Bromodomain testis-specific protein OS=Xenopus tropicalis GN=brdt
PE=3 SV=1
Length = 933
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 293 RSHKFGSFFERLDATK-ETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFN 351
R H F + +DA K PDY I++ DL TIR RLE N+YS + D +F
Sbjct: 46 RHHFSWPFQQPVDAAKLNLPDYYQIIKNPMDLSTIRKRLEYNYYSKALDC-IQDFNTMFT 104
Query: 352 NVIVF 356
N ++
Sbjct: 105 NCYIY 109
>sp|Q9ESU6|BRD4_MOUSE Bromodomain-containing protein 4 OS=Mus musculus GN=Brd4 PE=1 SV=1
Length = 1400
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 288 CIEIIRSHKFGSFFER-LDATK-ETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHD 345
++ + H+F F++ +DA K PDY I++ D+ TI+ RLE N+Y + D
Sbjct: 70 VLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQEC-IQD 128
Query: 346 LLLLFNNVIVF 356
+F N ++
Sbjct: 129 FNTMFTNCYIY 139
Score = 33.1 bits (74), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 312 DYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNSSESAAAVELR 371
DY I++ D+ TI+++LE Y + F D+ L+F+N + + A A +L+
Sbjct: 390 DYCDIIKHPMDMSTIKSKLESREYRDAQ-EFGADVRLMFSNCYKYNPPDHEVVAMARKLQ 448
Query: 372 QI 373
+
Sbjct: 449 DV 450
>sp|O60885|BRD4_HUMAN Bromodomain-containing protein 4 OS=Homo sapiens GN=BRD4 PE=1 SV=2
Length = 1362
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 288 CIEIIRSHKFGSFFER-LDATK-ETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHD 345
++ + H+F F++ +DA K PDY I++ D+ TI+ RLE N+Y + D
Sbjct: 70 VLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQEC-IQD 128
Query: 346 LLLLFNNVIVF 356
+F N ++
Sbjct: 129 FNTMFTNCYIY 139
>sp|Q4R8Y1|BRDT_MACFA Bromodomain testis-specific protein OS=Macaca fascicularis GN=BRDT
PE=2 SV=3
Length = 947
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 295 HKFGSFFER-LDATK-ETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNN 352
H F F+R +DA K + PDY +I++ DL TI+ RLE +Y + S D +F+N
Sbjct: 46 HSFSWPFQRPVDAVKLKLPDYYTIIKNPMDLNTIKKRLENKYYVKA-SECIEDFNTMFSN 104
Query: 353 VIVF 356
++
Sbjct: 105 CYLY 108
>sp|Q9W0T1|NU301_DROME Nucleosome-remodeling factor subunit NURF301 OS=Drosophila
melanogaster GN=E(bx) PE=1 SV=2
Length = 2669
Score = 42.0 bits (97), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 300 FFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDK 359
F E +D KE PDY ++++ DL+ + +LE N Y+ S F D+ +F+N + K
Sbjct: 2581 FMEPVDP-KEAPDYYKVIKEPMDLKRMEIKLESNTYTKL-SEFIGDMTKIFDNCRYYNPK 2638
Query: 360 NSSESAAAVELRQIV---LKAMTRNTFD 384
SS A L +K N FD
Sbjct: 2639 ESSFYKCAEALESYFVQKIKNFRENVFD 2666
>sp|O74350|BDC1_SCHPO Bromodomain-containing protein 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=bdc1 PE=1 SV=1
Length = 299
Score = 41.2 bits (95), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 285 LVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFH 344
++ ++ I +H+FG+ F KE PDY S+V + DL T++ ++E + + +
Sbjct: 194 MLPMLDNISNHRFGAPFSHPVNRKEAPDYDSLVYKPQDLRTLKNMIKEGNITEVD-ELYR 252
Query: 345 DLLLLFNNVIVFFDKNSSESAAAVEL 370
++L +F N ++ N S+ A A+ +
Sbjct: 253 EVLRIFANCKMY---NGSDPANAMSI 275
>sp|Q9NRL2|BAZ1A_HUMAN Bromodomain adjacent to zinc finger domain protein 1A OS=Homo sapiens
GN=BAZ1A PE=1 SV=2
Length = 1556
Score = 40.8 bits (94), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 289 IEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLL 348
+E++R H F +L + + PDY I+++ L IR ++ + Y + S F D+ L
Sbjct: 1443 VELVR-HDDSWPFLKLVSKIQVPDYYDIIKKPIALNIIREKVNKCEYKLA-SEFIDDIEL 1500
Query: 349 LFNNVIVFFDKNSSESAAAVELR 371
+F+N + +N+SE+ A L+
Sbjct: 1501 MFSNCFEYNPRNTSEAKAGTRLQ 1523
>sp|Q921C3|BRWD1_MOUSE Bromodomain and WD repeat-containing protein 1 OS=Mus musculus
GN=Brwd1 PE=1 SV=2
Length = 2304
Score = 36.6 bits (83), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 309 ETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFF-DKNSSESAAA 367
E PDYR I+ D T+R LE Y S F D+ L+F+N + +K S +
Sbjct: 1348 EYPDYRDIIDTPMDFGTVRETLEAGNYD-SPVEFCKDIRLIFSNAKAYTPNKRSKIYSMT 1406
Query: 368 VELRQIVLKAMTRNTFD 384
+ L + + M + +FD
Sbjct: 1407 LRLSALFEEKMKKISFD 1423
>sp|Q6BER5|NU301_CAEEL Nucleosome-remodeling factor subunit NURF301-like OS=Caenorhabditis
elegans GN=nurf-1 PE=1 SV=2
Length = 2194
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 55/142 (38%), Gaps = 18/142 (12%)
Query: 295 HKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVI 354
H+ + F E PDY +++ DL TI ++E Y S F +D+ +F N
Sbjct: 2049 HRMSTPFRNPVDLNEFPDYEKFIKKPMDLSTITKKVERTEYL-YLSQFVNDVNQMFENAK 2107
Query: 355 VF-----------------FDKNSSESAAAVELRQIVLKAMTRNTFDPNSSMREQYLEFA 397
+ FDK + + RQ +L T DP SS+R++ +
Sbjct: 2108 TYNPKGNAVFKCAETMQEVFDKKLIDVREQMTARQQMLLLATAQQQDPMSSIRKRVQSES 2167
Query: 398 AAQNVKLDVQSSDFLLSKPNIL 419
LD+ S L N++
Sbjct: 2168 QRTVDSLDIDSDQLLPLDANLM 2189
>sp|Q8IID4|DYHC2_PLAF7 Dynein heavy chain-like protein PF11_0240 OS=Plasmodium falciparum
(isolate 3D7) GN=PF11_0240 PE=3 SV=1
Length = 5251
Score = 33.5 bits (75), Expect = 4.8, Method: Composition-based stats.
Identities = 46/192 (23%), Positives = 83/192 (43%), Gaps = 31/192 (16%)
Query: 434 KRAVSLSSSLEAKKKEHTE--SSIGKNTVPSSV--KSDDDCRATKKRTRERSASGSGNSS 489
++A+ +++ E +++TE ++ KNT K+ +D +A +K T + A
Sbjct: 4108 EKAIEINTEDEKAVEKNTEDEKAVEKNTEDEKAIEKNTEDEKAVEKNTEDEKAVEKNTED 4167
Query: 490 KN---RKTRDNMKTKKNLD----VDIDADDSSDVEE-TECENSQRKNKANVNAKKRSAEI 541
+ + T D +KN + V+ + +D VEE TE E + KN + A +++ E
Sbjct: 4168 EKAIEKNTEDEKAVEKNTEDEKAVEQNTEDEKVVEENTEDEKAVEKNTEDEKAVEKNTE- 4226
Query: 542 FLSRITRSSTLKDFVISSEDGKGERAEQKKKAEHKKKKGN-GKIDAKKEQIVQKRSGGKK 600
E E+ E +K E K ++ N G + +K QI + KK
Sbjct: 4227 -----------------DEKVVEEKIEDEKGEEQKAEEENVGIEEVEKVQIDDYKVSEKK 4269
Query: 601 GEEMEGPVKKNG 612
GE ++NG
Sbjct: 4270 GENKNCTYEENG 4281
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.125 0.336
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 228,115,824
Number of Sequences: 539616
Number of extensions: 9705300
Number of successful extensions: 51138
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 1392
Number of HSP's that attempted gapping in prelim test: 43898
Number of HSP's gapped (non-prelim): 6701
length of query: 647
length of database: 191,569,459
effective HSP length: 124
effective length of query: 523
effective length of database: 124,657,075
effective search space: 65195650225
effective search space used: 65195650225
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 65 (29.6 bits)