Query 006378
Match_columns 647
No_of_seqs 152 out of 669
Neff 3.9
Searched_HMMs 46136
Date Thu Mar 28 22:25:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006378.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006378hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05507 Bromo_brd8_like Bromod 99.9 8.2E-27 1.8E-31 207.4 11.1 98 283-381 6-103 (104)
2 cd05495 Bromo_cbp_like Bromodo 99.9 2.6E-26 5.6E-31 205.9 11.8 101 282-383 5-108 (108)
3 cd05497 Bromo_Brdt_I_like Brom 99.9 2.1E-26 4.7E-31 206.2 11.1 95 285-380 10-106 (107)
4 cd05505 Bromo_WSTF_like Bromod 99.9 2.8E-26 6.1E-31 202.4 10.1 94 283-377 3-96 (97)
5 cd05504 Bromo_Acf1_like Bromod 99.9 1.4E-25 3.1E-30 203.2 11.2 101 280-381 12-112 (115)
6 cd05496 Bromo_WDR9_II Bromodom 99.9 1.3E-25 2.8E-30 205.2 11.0 99 283-382 8-107 (119)
7 cd05503 Bromo_BAZ2A_B_like Bro 99.9 2.3E-25 4.9E-30 195.6 10.3 95 283-378 3-97 (97)
8 cd05508 Bromo_RACK7 Bromodomai 99.9 2.3E-25 4.9E-30 197.6 10.1 94 283-378 6-99 (99)
9 cd05509 Bromo_gcn5_like Bromod 99.9 6.4E-25 1.4E-29 192.9 11.1 97 283-380 4-100 (101)
10 cd05510 Bromo_SPT7_like Bromod 99.9 1E-24 2.3E-29 197.2 11.2 99 282-381 9-109 (112)
11 cd05506 Bromo_plant1 Bromodoma 99.9 1.2E-24 2.7E-29 190.2 10.7 95 283-378 3-99 (99)
12 cd05512 Bromo_brd1_like Bromod 99.9 1E-24 2.2E-29 192.7 10.1 90 283-373 4-93 (98)
13 KOG1474 Transcription initiati 99.9 5.4E-25 1.2E-29 247.2 10.5 104 281-385 223-328 (640)
14 cd05513 Bromo_brd7_like Bromod 99.9 1.2E-24 2.6E-29 192.7 10.2 93 283-376 4-96 (98)
15 cd05502 Bromo_tif1_like Bromod 99.9 2.6E-24 5.6E-29 192.3 11.8 100 281-382 5-107 (109)
16 cd05528 Bromo_AAA Bromodomain; 99.9 2.4E-24 5.3E-29 194.7 11.0 98 284-382 7-108 (112)
17 cd05520 Bromo_polybromo_III Br 99.9 2.3E-24 5.1E-29 191.9 10.0 94 282-376 2-101 (103)
18 cd05499 Bromo_BDF1_2_II Bromod 99.9 3.2E-24 7E-29 189.2 10.5 95 283-378 3-102 (102)
19 cd05516 Bromo_SNF2L2 Bromodoma 99.9 4.1E-24 9E-29 191.2 10.5 97 283-380 4-106 (107)
20 cd05498 Bromo_Brdt_II_like Bro 99.9 5.1E-24 1.1E-28 187.5 10.6 95 283-378 3-102 (102)
21 cd05500 Bromo_BDF1_2_I Bromodo 99.9 5.3E-24 1.1E-28 188.6 10.6 96 282-378 6-103 (103)
22 cd05511 Bromo_TFIID Bromodomai 99.9 6.3E-24 1.4E-28 191.6 11.1 99 283-382 3-101 (112)
23 cd05524 Bromo_polybromo_I Brom 99.9 2.5E-23 5.5E-28 188.1 10.8 100 283-383 5-110 (113)
24 cd05515 Bromo_polybromo_V Brom 99.9 3.5E-23 7.7E-28 184.5 10.5 95 283-378 3-103 (105)
25 cd05501 Bromo_SP100C_like Brom 99.9 8.3E-23 1.8E-27 182.9 11.3 96 283-382 5-100 (102)
26 smart00297 BROMO bromo domain. 99.9 7.8E-23 1.7E-27 178.2 10.9 97 283-380 10-106 (107)
27 cd05519 Bromo_SNF2 Bromodomain 99.9 7.5E-23 1.6E-27 181.2 10.0 94 283-377 3-102 (103)
28 cd05529 Bromo_WDR9_I_like Brom 99.9 1.1E-22 2.3E-27 187.5 11.0 99 281-380 25-127 (128)
29 cd05525 Bromo_ASH1 Bromodomain 99.9 2.6E-22 5.5E-27 180.0 9.9 94 283-377 5-104 (106)
30 cd05517 Bromo_polybromo_II Bro 99.9 3.3E-22 7.2E-27 178.2 10.0 93 283-376 3-101 (103)
31 cd05518 Bromo_polybromo_IV Bro 99.9 3.4E-22 7.4E-27 178.2 9.9 93 283-376 3-101 (103)
32 PF00439 Bromodomain: Bromodom 99.9 6.3E-22 1.4E-26 165.7 9.6 84 285-369 1-84 (84)
33 cd04369 Bromodomain Bromodomai 99.9 8.9E-22 1.9E-26 165.1 9.7 94 283-377 3-98 (99)
34 cd05522 Bromo_Rsc1_2_II Bromod 99.9 9.9E-22 2.1E-26 175.1 10.2 94 283-377 4-103 (104)
35 cd05521 Bromo_Rsc1_2_I Bromodo 99.8 1.2E-20 2.6E-25 169.4 10.5 94 283-379 4-103 (106)
36 cd05492 Bromo_ZMYND11 Bromodom 99.8 2.2E-20 4.7E-25 169.0 11.5 96 285-381 5-106 (109)
37 KOG1245 Chromatin remodeling c 99.7 1.2E-17 2.6E-22 200.2 8.3 97 285-383 1306-1402(1404)
38 cd05526 Bromo_polybromo_VI Bro 99.7 7.9E-17 1.7E-21 146.4 10.0 97 283-382 6-108 (110)
39 COG5076 Transcription factor i 99.7 6.9E-17 1.5E-21 170.9 7.5 91 295-386 163-253 (371)
40 KOG1472 Histone acetyltransfer 99.5 4.1E-15 9E-20 168.1 5.4 99 283-382 609-707 (720)
41 cd05494 Bromodomain_1 Bromodom 99.3 2.5E-12 5.3E-17 117.3 3.3 76 283-359 6-90 (114)
42 KOG0955 PHD finger protein BR1 99.1 6.8E-11 1.5E-15 139.0 7.2 102 283-385 568-669 (1051)
43 KOG0008 Transcription initiati 98.9 8.8E-10 1.9E-14 130.3 5.5 94 286-380 1388-1481(1563)
44 cd05491 Bromo_TBP7_like Bromod 98.9 3E-09 6.5E-14 98.4 5.8 44 317-361 61-104 (119)
45 KOG0008 Transcription initiati 98.7 1.3E-08 2.8E-13 120.8 7.2 102 280-382 1261-1362(1563)
46 KOG0386 Chromatin remodeling c 98.7 1.5E-08 3.2E-13 118.1 6.7 100 283-383 1027-1132(1157)
47 KOG1827 Chromatin remodeling c 98.7 2.4E-08 5.3E-13 112.6 6.9 95 283-378 55-155 (629)
48 KOG1474 Transcription initiati 98.7 4.1E-09 9E-14 119.8 0.3 95 290-385 2-98 (640)
49 KOG1828 IRF-2-binding protein 98.6 6.2E-09 1.3E-13 111.4 -0.1 98 283-381 22-119 (418)
50 KOG1472 Histone acetyltransfer 98.5 8.4E-08 1.8E-12 109.8 5.5 68 294-362 300-367 (720)
51 KOG1828 IRF-2-binding protein 98.2 1.3E-06 2.7E-11 94.1 3.6 88 283-372 211-298 (418)
52 PF00249 Myb_DNA-binding: Myb- 97.7 3.1E-05 6.7E-10 60.1 3.9 45 12-63 2-47 (48)
53 smart00717 SANT SANT SWI3, AD 97.6 8.1E-05 1.7E-09 55.1 4.2 48 12-66 2-49 (49)
54 COG5076 Transcription factor i 97.5 2.6E-05 5.7E-10 83.4 0.9 97 285-382 268-364 (371)
55 cd00167 SANT 'SWI3, ADA2, N-Co 97.1 0.00067 1.5E-08 49.5 4.2 44 13-63 1-44 (45)
56 PF13921 Myb_DNA-bind_6: Myb-l 96.3 0.0039 8.3E-08 50.0 3.2 49 14-70 1-50 (60)
57 cd05493 Bromo_ALL-1 Bromodomai 96.0 0.011 2.3E-07 56.4 5.0 62 320-382 59-120 (131)
58 KOG0049 Transcription factor, 94.3 0.04 8.7E-07 63.6 4.1 53 11-70 360-413 (939)
59 TIGR02894 DNA_bind_RsfA transc 93.0 0.16 3.4E-06 50.1 5.0 105 11-123 4-127 (161)
60 PF13837 Myb_DNA-bind_4: Myb/S 92.6 0.16 3.4E-06 43.2 4.0 56 13-71 3-71 (90)
61 PLN03212 Transcription repress 91.0 0.26 5.7E-06 51.5 4.3 45 11-62 25-70 (249)
62 KOG0732 AAA+-type ATPase conta 90.6 0.12 2.5E-06 62.9 1.6 65 295-360 530-601 (1080)
63 COG5259 RSC8 RSC chromatin rem 89.4 0.29 6.4E-06 55.0 3.3 46 10-63 278-323 (531)
64 PLN03091 hypothetical protein; 89.1 0.43 9.4E-06 53.4 4.3 44 11-61 14-58 (459)
65 KOG0457 Histone acetyltransfer 89.0 0.65 1.4E-05 51.8 5.5 48 8-62 69-116 (438)
66 KOG0644 Uncharacterized conser 87.8 0.39 8.5E-06 57.2 3.0 60 318-378 1051-1110(1113)
67 COG5114 Histone acetyltransfer 85.3 1.1 2.4E-05 48.7 4.6 48 8-62 60-107 (432)
68 KOG1279 Chromatin remodeling f 83.6 1 2.2E-05 51.4 3.7 50 6-63 248-297 (506)
69 PLN03212 Transcription repress 81.3 1.8 3.9E-05 45.5 4.2 49 11-67 78-126 (249)
70 PLN03091 hypothetical protein; 77.8 2.7 6E-05 47.3 4.5 49 11-67 67-115 (459)
71 KOG0048 Transcription factor, 76.4 2.5 5.4E-05 43.3 3.5 44 11-61 9-53 (238)
72 smart00595 MADF subfamily of S 73.3 3.5 7.5E-05 35.2 3.1 30 33-70 29-58 (89)
73 PRK13923 putative spore coat p 71.2 21 0.00045 35.9 8.2 46 12-60 6-52 (170)
74 PF12776 Myb_DNA-bind_3: Myb/S 69.2 6.1 0.00013 34.0 3.7 36 33-70 33-68 (96)
75 TIGR02606 antidote_CC2985 puta 64.2 8.4 0.00018 32.8 3.5 27 324-351 12-38 (69)
76 TIGR01557 myb_SHAQKYF myb-like 60.8 26 0.00055 29.1 5.6 46 11-61 3-51 (57)
77 PF09111 SLIDE: SLIDE; InterP 59.3 23 0.00049 33.4 5.7 55 8-63 46-109 (118)
78 KOG0049 Transcription factor, 58.6 14 0.00031 43.7 5.1 57 11-71 412-468 (939)
79 KOG4282 Transcription factor G 55.9 19 0.00041 38.6 5.2 56 12-70 55-119 (345)
80 KOG0644 Uncharacterized conser 51.3 9.8 0.00021 46.1 2.3 86 280-375 74-188 (1113)
81 PF03693 RHH_2: Uncharacterise 51.2 15 0.00032 32.3 2.9 27 324-351 15-41 (80)
82 PF13873 Myb_DNA-bind_5: Myb/S 47.7 39 0.00084 28.4 4.8 52 13-66 4-71 (78)
83 PF10545 MADF_DNA_bdg: Alcohol 40.1 29 0.00063 28.6 2.9 33 32-70 27-59 (85)
84 cd02987 Phd_like_Phd Phosducin 37.4 30 0.00065 34.0 3.0 19 84-102 37-55 (175)
85 PF05377 FlaC_arch: Flagella a 37.4 38 0.00083 28.4 3.1 31 94-124 1-31 (55)
86 KOG0050 mRNA splicing protein 37.2 35 0.00076 39.7 3.8 45 11-62 7-51 (617)
87 KOG1827 Chromatin remodeling c 34.9 5.7 0.00012 46.6 -2.8 70 305-375 220-289 (629)
88 PF12949 HeH: HeH/LEM domain; 30.7 17 0.00036 27.8 -0.0 22 90-111 1-22 (35)
89 COG5509 Uncharacterized small 29.8 64 0.0014 27.8 3.3 34 87-127 19-52 (65)
90 PF08172 CASP_C: CASP C termin 23.8 88 0.0019 33.0 3.8 31 92-122 92-122 (248)
91 PF04859 DUF641: Plant protein 23.5 2.4E+02 0.0051 27.4 6.3 62 59-122 56-123 (131)
92 PF07716 bZIP_2: Basic region 22.1 1.5E+02 0.0033 23.8 4.1 35 88-122 20-54 (54)
93 PF03962 Mnd1: Mnd1 family; I 21.8 1E+02 0.0022 31.1 3.7 39 88-126 64-102 (188)
94 KOG4466 Component of histone d 21.4 1.1E+02 0.0023 33.3 3.9 20 105-124 114-133 (291)
95 PF02037 SAP: SAP domain; Int 21.0 93 0.002 23.2 2.4 31 90-120 1-32 (35)
96 cd02988 Phd_like_VIAF Phosduci 20.8 72 0.0016 32.0 2.4 18 85-102 59-76 (192)
97 PF08074 CHDCT2: CHDCT2 (NUC03 20.4 71 0.0015 32.3 2.2 56 11-67 3-63 (173)
No 1
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=8.2e-27 Score=207.40 Aligned_cols=98 Identities=24% Similarity=0.445 Sum_probs=95.2
Q ss_pred hhHHHHHHHHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCCH
Q 006378 283 RPLVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNSS 362 (647)
Q Consensus 283 q~L~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S~ 362 (647)
+.|+.||+.|..|+.+++|..||+.+.+|+||++|++||||+||+.||++|.|.++. +|.+||.|||+||++||++++.
T Consensus 6 ~~~~~il~~l~~~~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~-ef~~D~~li~~Na~~yN~~~s~ 84 (104)
T cd05507 6 KAILLVYRTLASHRYASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRSTA-EFQRDVLLMFQNAIMYNSSDHD 84 (104)
T ss_pred HHHHHHHHHHHcCCCCHhhcCCCCccccCCHHHHhCCCcCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCCCH
Confidence 679999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 006378 363 ESAAAVELRQIVLKAMTRN 381 (647)
Q Consensus 363 ~~kaA~eLrklv~K~m~k~ 381 (647)
+|.+|..|+..+.+.|...
T Consensus 85 v~~~A~~l~~~~~~~~~~~ 103 (104)
T cd05507 85 VYLMAVEMQREVMSQIQQL 103 (104)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 9999999999999998754
No 2
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=2.6e-26 Score=205.85 Aligned_cols=101 Identities=23% Similarity=0.344 Sum_probs=96.8
Q ss_pred chhHHHHHHHHHhC-ccCCccccCCCCC--CCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcC
Q 006378 282 SRPLVECIEIIRSH-KFGSFFERLDATK--ETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFD 358 (647)
Q Consensus 282 sq~L~~ILd~L~sh-k~a~~F~~PVd~q--e~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~ 358 (647)
.+.|+.||+.|..| +.+|+|..||++. ++||||++|++||||+||++||++|.|.++. +|.+||.|||+||+.||+
T Consensus 5 ~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~-ef~~D~~li~~Na~~yN~ 83 (108)
T cd05495 5 RQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPW-QYVDDVWLMFDNAWLYNR 83 (108)
T ss_pred HHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCC
Confidence 36799999999999 9999999999986 8999999999999999999999999999999 999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhcC
Q 006378 359 KNSSESAAAVELRQIVLKAMTRNTF 383 (647)
Q Consensus 359 ~~S~~~kaA~eLrklv~K~m~k~l~ 383 (647)
++|.+|.+|..|+++|.++|..+++
T Consensus 84 ~~s~i~~~a~~l~~~F~~~~~~~~~ 108 (108)
T cd05495 84 KTSRVYKYCTKLAEVFEQEIDPVMQ 108 (108)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999998763
No 3
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=2.1e-26 Score=206.22 Aligned_cols=95 Identities=25% Similarity=0.458 Sum_probs=91.3
Q ss_pred HHHHHHHHHhCccCCccccCCCCC--CCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCCH
Q 006378 285 LVECIEIIRSHKFGSFFERLDATK--ETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNSS 362 (647)
Q Consensus 285 L~~ILd~L~shk~a~~F~~PVd~q--e~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S~ 362 (647)
+..||+.|+.|+.+|+|..|||+. ++||||+||++||||+||+.||++|.|.++. +|..||.|||.||+.||+++|+
T Consensus 10 ~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~-ef~~D~~li~~Na~~yN~~~s~ 88 (107)
T cd05497 10 LKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSAS-ECIQDFNTMFTNCYIYNKPGDD 88 (107)
T ss_pred HHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHH-HHHHHHHHHHHHHHHHCCCCCH
Confidence 457899999999999999999986 7999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 006378 363 ESAAAVELRQIVLKAMTR 380 (647)
Q Consensus 363 ~~kaA~eLrklv~K~m~k 380 (647)
+|.+|..|+++|.+.|.+
T Consensus 89 i~~~A~~l~~~f~~~l~~ 106 (107)
T cd05497 89 VVLMAQTLEKLFLQKLAQ 106 (107)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999999999999875
No 4
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=2.8e-26 Score=202.40 Aligned_cols=94 Identities=21% Similarity=0.348 Sum_probs=91.5
Q ss_pred hhHHHHHHHHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCCH
Q 006378 283 RPLVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNSS 362 (647)
Q Consensus 283 q~L~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S~ 362 (647)
+.|..||+.|++|+++|+|..||+..++||||+||++||||+||+.||+.|.|.|+. +|.+||.|||+||++||+++|.
T Consensus 3 ~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~-ef~~D~~li~~Na~~yN~~~s~ 81 (97)
T cd05505 3 QKCEEILSKILKYRFSWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGSYSSVQ-EFLDDMKLVFSNAEKYYENGSY 81 (97)
T ss_pred HHHHHHHHHHHhCCCcccccCCCChhhcccHHHHcCCcCCHHHHHHHHcCCCCCCHH-HHHHHHHHHHHHHHHHCCCCCH
Confidence 579999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 006378 363 ESAAAVELRQIVLKA 377 (647)
Q Consensus 363 ~~kaA~eLrklv~K~ 377 (647)
+|.+|..|+++|...
T Consensus 82 i~~~a~~le~~f~~~ 96 (97)
T cd05505 82 VLSCMRKTEQCCVNL 96 (97)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998765
No 5
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.4e-25 Score=203.24 Aligned_cols=101 Identities=26% Similarity=0.368 Sum_probs=97.5
Q ss_pred ccchhHHHHHHHHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCC
Q 006378 280 AESRPLVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDK 359 (647)
Q Consensus 280 ~~sq~L~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~ 359 (647)
.+.+.|..||+.|+.|+.+++|.+||+..++|+||++|++||||+||++||+.|.|.++. +|..||.|||+||++||++
T Consensus 12 ~~~~~c~~il~~l~~~~~s~~F~~pvd~~~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~-~f~~Dv~LI~~Na~~yN~~ 90 (115)
T cd05504 12 LNLSALEQLLVEIVKHKDSWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGEYKLAE-EFLSDIQLVFSNCFLYNPE 90 (115)
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCCCCccccccHHHHhcCcccHHHHHHHHccCCCCCHH-HHHHHHHHHHHHHHHHCCC
Confidence 445789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhh
Q 006378 360 NSSESAAAVELRQIVLKAMTRN 381 (647)
Q Consensus 360 ~S~~~kaA~eLrklv~K~m~k~ 381 (647)
+|++|.+|..|+++|.+.|++.
T Consensus 91 ~s~i~~~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 91 HTSVYKAGTRLQRFFIKRCRKL 112 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999874
No 6
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.3e-25 Score=205.19 Aligned_cols=99 Identities=19% Similarity=0.285 Sum_probs=96.0
Q ss_pred hhHHHHHHHHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCC-CC
Q 006378 283 RPLVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDK-NS 361 (647)
Q Consensus 283 q~L~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~-~S 361 (647)
+.|..||+.|+.|+.+++|..||+..++||||+||++||||+||+.||..|.|.++. +|..||.|||.||+.||++ +|
T Consensus 8 ~~c~~il~~l~~~~~s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~-ef~~D~~lif~Na~~yN~~~~s 86 (119)
T cd05496 8 KQCKELVNLMWDCEDSEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPM-EFAKDVRLIFSNSKSYTPNKRS 86 (119)
T ss_pred HHHHHHHHHHHhCCccccccCCCChhhcCcHHHHhCCcccHHHHHHHHhCCCCCCHH-HHHHHHHHHHHHHHHHCCCCCC
Confidence 579999999999999999999999999999999999999999999999999999999 9999999999999999985 99
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 006378 362 SESAAAVELRQIVLKAMTRNT 382 (647)
Q Consensus 362 ~~~kaA~eLrklv~K~m~k~l 382 (647)
.+|.+|..|..+|.+.|.++.
T Consensus 87 ~i~~~a~~L~~~F~~~~~~l~ 107 (119)
T cd05496 87 RIYSMTLRLSALFEEHIKKII 107 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998876
No 7
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2.3e-25 Score=195.60 Aligned_cols=95 Identities=26% Similarity=0.370 Sum_probs=92.1
Q ss_pred hhHHHHHHHHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCCH
Q 006378 283 RPLVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNSS 362 (647)
Q Consensus 283 q~L~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S~ 362 (647)
..|..||+.|..|+.+++|..||+...+|+||++|++||||+||+.||++|.|.|+. +|..||.|||.||+.||+++|.
T Consensus 3 ~~c~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~-ef~~D~~li~~Na~~yN~~~s~ 81 (97)
T cd05503 3 ALCETILDEMEAHEDAWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQYKTLE-EFAEDVRLVFDNCETFNEDDSE 81 (97)
T ss_pred HHHHHHHHHHHcCCCchhhcCCCCccccCCHHHHhCCCCCHHHHHHHHccCCCCCHH-HHHHHHHHHHHHHHHHCCCCCH
Confidence 468999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 006378 363 ESAAAVELRQIVLKAM 378 (647)
Q Consensus 363 ~~kaA~eLrklv~K~m 378 (647)
+|.+|..|+++|.+.|
T Consensus 82 i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 82 VGRAGHNMRKFFEKRW 97 (97)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999998764
No 8
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2.3e-25 Score=197.61 Aligned_cols=94 Identities=20% Similarity=0.319 Sum_probs=89.9
Q ss_pred hhHHHHHHHHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCCH
Q 006378 283 RPLVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNSS 362 (647)
Q Consensus 283 q~L~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S~ 362 (647)
..|..+|+.|+ |+.+|+|..||+..++||||.+|++||||+||+.||++|.|.++. +|.+||.|||.||++||+++|.
T Consensus 6 ~~L~~~~~~~~-~~~s~~F~~PV~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~-ef~~Dv~LI~~Na~~YN~~~s~ 83 (99)
T cd05508 6 KLLKFALERMK-QPGAEPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKAYGSTD-AFLADAKWILHNAIIYNGGDHK 83 (99)
T ss_pred HHHHHHHHHHh-CcCcchhcCCCChhhCCCHHHHcCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCCCH
Confidence 56888899999 999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 006378 363 ESAAAVELRQIVLKAM 378 (647)
Q Consensus 363 ~~kaA~eLrklv~K~m 378 (647)
++.+|..|.+++..+|
T Consensus 84 i~~~A~~l~~~~~~e~ 99 (99)
T cd05508 84 LTQAAKAIVKICEQEM 99 (99)
T ss_pred HHHHHHHHHHHHHhhC
Confidence 9999999999887654
No 9
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=6.4e-25 Score=192.88 Aligned_cols=97 Identities=24% Similarity=0.436 Sum_probs=94.7
Q ss_pred hhHHHHHHHHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCCH
Q 006378 283 RPLVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNSS 362 (647)
Q Consensus 283 q~L~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S~ 362 (647)
..|..||+.|.+|+.+++|.+||+..++|+||++|++||||.||+.||..|.|.++. +|..||.|||.||+.||+++|.
T Consensus 4 ~~~~~il~~l~~~~~a~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~-~f~~Dv~li~~Na~~yN~~~s~ 82 (101)
T cd05509 4 TQLKKVLDSLKNHKSAWPFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYYVTLE-EFVADLKLIFDNCRLYNGPDTE 82 (101)
T ss_pred HHHHHHHHHHHhCCCchhhcCCCChhhcCCHHHHhcCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCCCH
Confidence 579999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 006378 363 ESAAAVELRQIVLKAMTR 380 (647)
Q Consensus 363 ~~kaA~eLrklv~K~m~k 380 (647)
+|.+|..|+++|.+.|.+
T Consensus 83 ~~~~a~~l~~~f~~~~~~ 100 (101)
T cd05509 83 YYKCANKLEKFFWKKLKE 100 (101)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999999875
No 10
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1e-24 Score=197.19 Aligned_cols=99 Identities=19% Similarity=0.314 Sum_probs=94.0
Q ss_pred chhHHHHHHHHHhC-ccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCC
Q 006378 282 SRPLVECIEIIRSH-KFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKN 360 (647)
Q Consensus 282 sq~L~~ILd~L~sh-k~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~ 360 (647)
.+.|..||+.|++| +.+++|..||+..++||||++|++||||+||+.||.+|.|.++. +|..||.|||+||+.||+++
T Consensus 9 ~~~~~~il~~l~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-ef~~D~~Li~~N~~~yN~~~ 87 (112)
T cd05510 9 YESLDKVLNELKTYTEHSTPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQYKSKA-EFVDDLNLIWKNCLLYNSDP 87 (112)
T ss_pred HHHHHHHHHHHHhcCccccchhcCCChhhcCCHHHHhcCccCHHHHHHHHhCCCCCCHH-HHHHHHHHHHHHHHHHCCCC
Confidence 46799999999999 99999999999999999999999999999999999999999999 99999999999999999976
Q ss_pred C-HHHHHHHHHHHHHHHHHHhh
Q 006378 361 S-SESAAAVELRQIVLKAMTRN 381 (647)
Q Consensus 361 S-~~~kaA~eLrklv~K~m~k~ 381 (647)
+ +++.+|..|++++.+.|..+
T Consensus 88 s~~~~~~A~~l~~~~~~~~~~~ 109 (112)
T cd05510 88 SHPLRRHANFMKKKAEHLLKLI 109 (112)
T ss_pred CHHHHHHHHHHHHHHHHHHHHC
Confidence 5 78999999999999998764
No 11
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.2e-24 Score=190.21 Aligned_cols=95 Identities=25% Similarity=0.370 Sum_probs=91.4
Q ss_pred hhHHHHHHHHHhCccCCccccCCCCC--CCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCC
Q 006378 283 RPLVECIEIIRSHKFGSFFERLDATK--ETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKN 360 (647)
Q Consensus 283 q~L~~ILd~L~shk~a~~F~~PVd~q--e~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~ 360 (647)
+.|..||+.|+.|+.+++|..||+.. ++|+||++|++||||.||+.||++|.|.++. +|..||.|||.||+.||+++
T Consensus 3 ~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~-ef~~D~~li~~Na~~yn~~~ 81 (99)
T cd05506 3 KQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPE-EFAADVRLTFANAMRYNPPG 81 (99)
T ss_pred HHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCC
Confidence 46999999999999999999999976 7999999999999999999999999999999 99999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 006378 361 SSESAAAVELRQIVLKAM 378 (647)
Q Consensus 361 S~~~kaA~eLrklv~K~m 378 (647)
|.+|.+|..|+++|.++|
T Consensus 82 s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 82 NDVHTMAKELLKIFETRW 99 (99)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999998764
No 12
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1e-24 Score=192.74 Aligned_cols=90 Identities=27% Similarity=0.400 Sum_probs=87.2
Q ss_pred hhHHHHHHHHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCCH
Q 006378 283 RPLVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNSS 362 (647)
Q Consensus 283 q~L~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S~ 362 (647)
..|..||+.|+.|+.+++|.+||+..++|+||++|++||||+||++||.+|.|.++. +|..||.|||+||+.||+++|.
T Consensus 4 ~~l~~il~~l~~~~~~~~F~~pVd~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~-ef~~D~~li~~Na~~yN~~~s~ 82 (98)
T cd05512 4 VLLRKTLDQLQEKDTAEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRTLE-DFEADFNLIINNCLAYNAKDTI 82 (98)
T ss_pred HHHHHHHHHHHhCCCchhhcCCCCccccCCHHHHhcCCcCHHHHHHHHhCCCCCCHH-HHHHHHHHHHHHHHHHCCCCCH
Confidence 468899999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 006378 363 ESAAAVELRQI 373 (647)
Q Consensus 363 ~~kaA~eLrkl 373 (647)
+|++|..|++.
T Consensus 83 ~~~~A~~l~~~ 93 (98)
T cd05512 83 FYRAAVRLRDQ 93 (98)
T ss_pred HHHHHHHHHHh
Confidence 99999999873
No 13
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=99.91 E-value=5.4e-25 Score=247.18 Aligned_cols=104 Identities=22% Similarity=0.343 Sum_probs=98.9
Q ss_pred cchhHHHHHHHHHhCccCCccccCCCCC--CCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcC
Q 006378 281 ESRPLVECIEIIRSHKFGSFFERLDATK--ETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFD 358 (647)
Q Consensus 281 ~sq~L~~ILd~L~shk~a~~F~~PVd~q--e~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~ 358 (647)
.-..|..||..|+.|+++|+|..|||.. ++||||+||++||||+||+.||++|.|.+.. +|+.||.|||+||+.||+
T Consensus 223 ~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~-eF~~DVRL~F~Ncm~YNp 301 (640)
T KOG1474|consen 223 LLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAE-EFAADVRLTFDNCMTYNP 301 (640)
T ss_pred HHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHH-HHHHHHHHHHHHHHhcCC
Confidence 3478999999999999999999999986 9999999999999999999999999999999 999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 006378 359 KNSSESAAAVELRQIVLKAMTRNTFDP 385 (647)
Q Consensus 359 ~~S~~~kaA~eLrklv~K~m~k~l~k~ 385 (647)
+++++|.||..|+.+|..+|..+....
T Consensus 302 ~g~dV~~Ma~~L~~~Fe~rw~~~~~~~ 328 (640)
T KOG1474|consen 302 EGSDVYAMAKKLQEVFEERWASMPLEI 328 (640)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhccccc
Confidence 999999999999999999998866544
No 14
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.2e-24 Score=192.71 Aligned_cols=93 Identities=22% Similarity=0.329 Sum_probs=88.8
Q ss_pred hhHHHHHHHHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCCH
Q 006378 283 RPLVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNSS 362 (647)
Q Consensus 283 q~L~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S~ 362 (647)
+-|..||+.|+.|+.+++|..||+...+||||++|++||||+||+.||+++.|.++. +|..||.|||.||+.||+++|.
T Consensus 4 ~~l~~il~~l~~~~~~~~F~~PV~~~~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~-~f~~D~~li~~Na~~yN~~~s~ 82 (98)
T cd05513 4 KALEQLIRQLQRKDPHGFFAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNNDYQSIE-EFKDDFKLMCENAMKYNKPDTI 82 (98)
T ss_pred HHHHHHHHHHHcCCccccccCcCCccccccHHHHHcCccCHHHHHHHHhCCCCCCHH-HHHHHHHHHHHHHHHHCCCCCH
Confidence 468899999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 006378 363 ESAAAVELRQIVLK 376 (647)
Q Consensus 363 ~~kaA~eLrklv~K 376 (647)
+|.+|..|+....+
T Consensus 83 ~~~~A~~L~~~~~~ 96 (98)
T cd05513 83 YYKAAKKLLHSGMK 96 (98)
T ss_pred HHHHHHHHHHhhhh
Confidence 99999999876544
No 15
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2.6e-24 Score=192.30 Aligned_cols=100 Identities=23% Similarity=0.377 Sum_probs=96.3
Q ss_pred cchhHHHHHHHHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhc---CCcCCcHHHHHHHHHHHHHHhhhhc
Q 006378 281 ESRPLVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEE---NWYSGSNSSFFHDLLLLFNNVIVFF 357 (647)
Q Consensus 281 ~sq~L~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLes---g~Y~S~~~EF~rDLlLmf~NA~vYN 357 (647)
+...|..||..|+.|+.+++|.+||+. ++|+||++|++||||.||+.||+. |.|.++. +|.+||.|||+||+.||
T Consensus 5 ~~~~c~~il~~l~~~~~s~~F~~pv~~-~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~-~f~~D~~li~~Na~~yN 82 (109)
T cd05502 5 DQRKCERLLLELYCHELSLPFHEPVSP-SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPE-EFVADVRLMFKNCYKFN 82 (109)
T ss_pred HHHHHHHHHHHHHhCCCChhhcCCCCC-CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHH-HHHHHHHHHHHHHHHHC
Confidence 346799999999999999999999999 899999999999999999999998 6999999 99999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhc
Q 006378 358 DKNSSESAAAVELRQIVLKAMTRNT 382 (647)
Q Consensus 358 ~~~S~~~kaA~eLrklv~K~m~k~l 382 (647)
+++|.++.+|..|+++|.+.|.+.+
T Consensus 83 ~~~s~i~~~a~~l~~~f~~~~~~~~ 107 (109)
T cd05502 83 EEDSEVAQAGKELELFFEEQLKEIL 107 (109)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999876
No 16
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.91 E-value=2.4e-24 Score=194.69 Aligned_cols=98 Identities=26% Similarity=0.362 Sum_probs=94.4
Q ss_pred hHHHHHHHHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCC---
Q 006378 284 PLVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKN--- 360 (647)
Q Consensus 284 ~L~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~--- 360 (647)
.|..||+.|++|+.+++|.+||+.+++||||++|++||||+||+.||+++.|.|+. +|..||.|||+||+.||+++
T Consensus 7 ~L~~il~~l~~~~~~~~F~~pv~~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~-ef~~Dv~li~~Na~~yN~~~s~~ 85 (112)
T cd05528 7 FLRDVLKRLASDKRFNAFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQYLTAK-DFLKDIDLIVTNALEYNPDRDPA 85 (112)
T ss_pred HHHHHHHHHHhCCCchhhcCCCCccccCcHHHHHcCCCCHHHHHHHHcCCCcCCHH-HHHHHHHHHHHHHHHHCCCCCcc
Confidence 58899999999999999999999999999999999999999999999999999999 99999999999999999995
Q ss_pred -CHHHHHHHHHHHHHHHHHHhhc
Q 006378 361 -SSESAAAVELRQIVLKAMTRNT 382 (647)
Q Consensus 361 -S~~~kaA~eLrklv~K~m~k~l 382 (647)
+.++.+|..|+++|.+.+.+.+
T Consensus 86 ~s~i~~~A~~L~~~~~~~~~~~~ 108 (112)
T cd05528 86 DKLIRSRACELRDEVHAMIEAEL 108 (112)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcC
Confidence 6999999999999999998766
No 17
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.91 E-value=2.3e-24 Score=191.94 Aligned_cols=94 Identities=27% Similarity=0.403 Sum_probs=90.9
Q ss_pred chhHHHHHHHHHhCc------cCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhh
Q 006378 282 SRPLVECIEIIRSHK------FGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIV 355 (647)
Q Consensus 282 sq~L~~ILd~L~shk------~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~v 355 (647)
|+||..||+.|++|+ .+++|.+|++..++||||+||++||||+||+.||+.|.|.++. +|..||.|||.||+.
T Consensus 2 ~~~~~~l~~~i~~~~~~~g~~~s~pF~~~p~~~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~lm~~Na~~ 80 (103)
T cd05520 2 SNPLWQLYDTIRNARNNQGQLLAEPFLKLPSKRKYPDYYQEIKNPISLQQIRTKLKNGEYETLE-ELEADLNLMFENAKR 80 (103)
T ss_pred CchHHHHHHHHHhhcCCCCCCccHhhhcCCCcccCCCHHHHcCCCcCHHHHHHHHccCCCCCHH-HHHHHHHHHHHHHHH
Confidence 689999999999986 8899999999999999999999999999999999999999999 999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHH
Q 006378 356 FFDKNSSESAAAVELRQIVLK 376 (647)
Q Consensus 356 YN~~~S~~~kaA~eLrklv~K 376 (647)
||+++|.+|.+|..|+++|.+
T Consensus 81 yN~~~s~i~~~A~~L~~~f~~ 101 (103)
T cd05520 81 YNVPNSRIYKDAEKLQKLMQA 101 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999998875
No 18
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=3.2e-24 Score=189.22 Aligned_cols=95 Identities=20% Similarity=0.308 Sum_probs=90.7
Q ss_pred hhHHHHHHHHHh---CccCCccccCCCCC--CCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhc
Q 006378 283 RPLVECIEIIRS---HKFGSFFERLDATK--ETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFF 357 (647)
Q Consensus 283 q~L~~ILd~L~s---hk~a~~F~~PVd~q--e~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN 357 (647)
+.|..||+.|+. |+.+++|.+||++. ++|+||++|++||||+||+.||+.+.|.++. +|..||.|||.||+.||
T Consensus 3 ~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~-ef~~D~~li~~N~~~yn 81 (102)
T cd05499 3 KFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAK-EFERDVRLIFKNCYTFN 81 (102)
T ss_pred HHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHH-HHHHHHHHHHHHHHHHC
Confidence 578999999998 56899999999987 9999999999999999999999999999999 99999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 006378 358 DKNSSESAAAVELRQIVLKAM 378 (647)
Q Consensus 358 ~~~S~~~kaA~eLrklv~K~m 378 (647)
+++|.+|.+|..|+++|.+.|
T Consensus 82 ~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 82 PEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999998764
No 19
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=4.1e-24 Score=191.19 Aligned_cols=97 Identities=21% Similarity=0.374 Sum_probs=93.7
Q ss_pred hhHHHHHHHHHhCcc------CCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhh
Q 006378 283 RPLVECIEIIRSHKF------GSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVF 356 (647)
Q Consensus 283 q~L~~ILd~L~shk~------a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vY 356 (647)
+.|..||+.|..|.. +++|..|++..++||||.||++||||+||+.||.+|.|.++. +|..||.|||.||+.|
T Consensus 4 ~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~-ef~~D~~li~~Na~~y 82 (107)
T cd05516 4 KKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLE-DLEKDVMLLCQNAQTF 82 (107)
T ss_pred HHHHHHHHHHHhhhCcCCCEeeHHhhcCCCcccCCCHHHHcCCCCCHHHHHHHHccCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 678999999999987 899999999999999999999999999999999999999999 9999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHh
Q 006378 357 FDKNSSESAAAVELRQIVLKAMTR 380 (647)
Q Consensus 357 N~~~S~~~kaA~eLrklv~K~m~k 380 (647)
|+++|.+|.+|..|+++|...|++
T Consensus 83 N~~~s~i~~~a~~l~~~f~~~~~~ 106 (107)
T cd05516 83 NLEGSLIYEDSIVLQSVFKSARQK 106 (107)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999875
No 20
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=5.1e-24 Score=187.49 Aligned_cols=95 Identities=20% Similarity=0.312 Sum_probs=91.0
Q ss_pred hhHHHHHHHHHhC---ccCCccccCCCCC--CCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhc
Q 006378 283 RPLVECIEIIRSH---KFGSFFERLDATK--ETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFF 357 (647)
Q Consensus 283 q~L~~ILd~L~sh---k~a~~F~~PVd~q--e~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN 357 (647)
+.|..||+.|+.| +++++|.+||++. ++|+||++|++||||.||+.||++|.|.++. +|..||.|||.||+.||
T Consensus 3 ~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~-ef~~D~~li~~Na~~yn 81 (102)
T cd05498 3 KFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQ-EFAADVRLMFSNCYKYN 81 (102)
T ss_pred hHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHH-HHHHHHHHHHHHHHHHC
Confidence 5799999999999 8999999999975 7999999999999999999999999999999 99999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 006378 358 DKNSSESAAAVELRQIVLKAM 378 (647)
Q Consensus 358 ~~~S~~~kaA~eLrklv~K~m 378 (647)
+++|.+|.+|..|+++|.+.|
T Consensus 82 ~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 82 PPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999998764
No 21
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=5.3e-24 Score=188.60 Aligned_cols=96 Identities=23% Similarity=0.330 Sum_probs=91.9
Q ss_pred chhHHHHHHHHHhCccCCccccCCCCC--CCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCC
Q 006378 282 SRPLVECIEIIRSHKFGSFFERLDATK--ETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDK 359 (647)
Q Consensus 282 sq~L~~ILd~L~shk~a~~F~~PVd~q--e~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~ 359 (647)
-+.|+.||+.|+.|+.+++|..||++. .+|+||++|++||||+||+.||..|.|.++. +|..||.|||+||+.||++
T Consensus 6 ~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~-~f~~D~~li~~Na~~yN~~ 84 (103)
T cd05500 6 HKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVE-EFTADFNLMVDNCLTFNGP 84 (103)
T ss_pred HHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCC
Confidence 367999999999999999999999975 8999999999999999999999999999999 9999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 006378 360 NSSESAAAVELRQIVLKAM 378 (647)
Q Consensus 360 ~S~~~kaA~eLrklv~K~m 378 (647)
+|.++.+|..|++.|.+.|
T Consensus 85 ~s~~~~~A~~l~~~fe~~~ 103 (103)
T cd05500 85 EHPVSQMGKRLQAAFEKHL 103 (103)
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 9999999999999998764
No 22
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=6.3e-24 Score=191.55 Aligned_cols=99 Identities=21% Similarity=0.359 Sum_probs=95.2
Q ss_pred hhHHHHHHHHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCCH
Q 006378 283 RPLVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNSS 362 (647)
Q Consensus 283 q~L~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S~ 362 (647)
--|..||+.|++|+.+++|..||++..+|+||++|++||||.||++||..+.|.++. +|.+||.|||.||+.||+++|.
T Consensus 3 ~~l~~ii~~l~~~~~s~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~-ef~~Dv~li~~Na~~yN~~~s~ 81 (112)
T cd05511 3 FILDEIVNELKNLPDSWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQSRE-EFLEDIELIVDNSVLYNGPDSV 81 (112)
T ss_pred HHHHHHHHHHHhCCCchhhcCCCChhhcccHHHHhcCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCCCH
Confidence 358899999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 006378 363 ESAAAVELRQIVLKAMTRNT 382 (647)
Q Consensus 363 ~~kaA~eLrklv~K~m~k~l 382 (647)
+|.+|..|+.+|...|...-
T Consensus 82 i~~~A~~l~~~~~~~~~~~~ 101 (112)
T cd05511 82 YTKKAKEMLELAEELLAERE 101 (112)
T ss_pred HHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999987754
No 23
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.89 E-value=2.5e-23 Score=188.07 Aligned_cols=100 Identities=24% Similarity=0.357 Sum_probs=93.9
Q ss_pred hhHHHHHHHHHhC------ccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhh
Q 006378 283 RPLVECIEIIRSH------KFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVF 356 (647)
Q Consensus 283 q~L~~ILd~L~sh------k~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vY 356 (647)
+.|..||+.|+++ +.+.+|.++++...+|+||++|++||||+||++||.++.|.++. +|..||.|||+||+.|
T Consensus 5 ~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~-~f~~D~~lm~~Na~~y 83 (113)
T cd05524 5 AVCQELYDTIRNYKSEDGRILCESFIRVPKRRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVD-DLTADFELLINNAKAY 83 (113)
T ss_pred HHHHHHHHHHHhhcccCCCchhHHHhcCCCcccCCCHHHHhCCccCHHHHHHHhCcCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 5689999999974 46679999999999999999999999999999999999999999 9999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHhhcC
Q 006378 357 FDKNSSESAAAVELRQIVLKAMTRNTF 383 (647)
Q Consensus 357 N~~~S~~~kaA~eLrklv~K~m~k~l~ 383 (647)
|+++|.+|.+|..|+++|.+.+++.+.
T Consensus 84 N~~~s~~~~~A~~L~~~f~~~~~~~~~ 110 (113)
T cd05524 84 YKPDSPEHKDACKLWELFLSARNEVLS 110 (113)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999988763
No 24
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.89 E-value=3.5e-23 Score=184.47 Aligned_cols=95 Identities=25% Similarity=0.515 Sum_probs=89.1
Q ss_pred hhHHHHHHHHHhC------ccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhh
Q 006378 283 RPLVECIEIIRSH------KFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVF 356 (647)
Q Consensus 283 q~L~~ILd~L~sh------k~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vY 356 (647)
+.|..||+.|+.+ +++++|.+|++..++|+||++|++||||.||++||.++.|.++. +|..||.|||.||+.|
T Consensus 3 ~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~-ef~~D~~l~~~Na~~y 81 (105)
T cd05515 3 QKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLD-DMVSDFVLMFDNACKY 81 (105)
T ss_pred HHHHHHHHHHHHhhCcCCCcccHHhccCCCcccCCcHHHHcCCCcCHHHHHHHHccCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 5688888888875 57899999999999999999999999999999999999999999 9999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHH
Q 006378 357 FDKNSSESAAAVELRQIVLKAM 378 (647)
Q Consensus 357 N~~~S~~~kaA~eLrklv~K~m 378 (647)
|+++|.+|.+|..|+++|....
T Consensus 82 N~~~s~i~~~A~~L~~~~~~~~ 103 (105)
T cd05515 82 NEPDSQIYKDALTLQKVLLETK 103 (105)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998754
No 25
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=8.3e-23 Score=182.87 Aligned_cols=96 Identities=18% Similarity=0.240 Sum_probs=91.0
Q ss_pred hhHHHHHHHHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCCH
Q 006378 283 RPLVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNSS 362 (647)
Q Consensus 283 q~L~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S~ 362 (647)
..|..||..|..|+.+++|.++ +..+||||+||++||||+||+.||.+|.|.++. +|.+||.|||+||+.||+++ +
T Consensus 5 ~~ce~il~~l~~~~~s~~f~~~--p~~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~-ef~~D~~Lif~N~~~yN~~~-~ 80 (102)
T cd05501 5 LKCEFLLLKVYCMSKSGFFISK--PYYIRDYCQGIKEPMWLNKVKERLNERVYHTVE-GFVRDMRLIFHNHKLFYKDD-D 80 (102)
T ss_pred HHHHHHHHHHHhCcccccccCC--CCCCCchHHHcCCCCCHHHHHHHHcCCCCCCHH-HHHHHHHHHHHHHHHHcCCC-H
Confidence 4689999999999999999763 459999999999999999999999999999999 99999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 006378 363 ESAAAVELRQIVLKAMTRNT 382 (647)
Q Consensus 363 ~~kaA~eLrklv~K~m~k~l 382 (647)
++.+|..|.++|.+.|.+.+
T Consensus 81 ~~~~a~~L~~~Fek~~~~~f 100 (102)
T cd05501 81 FGQVGITLEKKFEKNFKEVF 100 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998876
No 26
>smart00297 BROMO bromo domain.
Probab=99.89 E-value=7.8e-23 Score=178.22 Aligned_cols=97 Identities=28% Similarity=0.437 Sum_probs=93.9
Q ss_pred hhHHHHHHHHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCCH
Q 006378 283 RPLVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNSS 362 (647)
Q Consensus 283 q~L~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S~ 362 (647)
..|..|++.|..|+.+++|.+||+....|+||.+|.+||||.||+.||+.|.|.++. +|..||.|||.||+.||++++.
T Consensus 10 ~~~~~i~~~~~~~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~-ef~~D~~li~~Na~~~n~~~s~ 88 (107)
T smart00297 10 SLLKAVLDKLDSHRLSWPFLKPVDRKEAPDYYDIIKKPMDLSTIKKKLENGKYSSVE-EFVADVQLMFSNAKTYNGPDSE 88 (107)
T ss_pred HHHHHHHHHHHhCccchhhccCCChhhccCHHHHhcCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCCCH
Confidence 568899999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 006378 363 ESAAAVELRQIVLKAMTR 380 (647)
Q Consensus 363 ~~kaA~eLrklv~K~m~k 380 (647)
+|.+|..|+++|...|++
T Consensus 89 ~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 89 VYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999999875
No 27
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=7.5e-23 Score=181.24 Aligned_cols=94 Identities=24% Similarity=0.419 Sum_probs=88.7
Q ss_pred hhHHHHHHHHHh------CccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhh
Q 006378 283 RPLVECIEIIRS------HKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVF 356 (647)
Q Consensus 283 q~L~~ILd~L~s------hk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vY 356 (647)
+.|..||+.|+. |+.+++|.+|++..++|+||++|++||||.||++||+.|.|.++. +|..||.|||.||+.|
T Consensus 3 ~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~-~f~~D~~li~~Na~~y 81 (103)
T cd05519 3 AAMLEIYDAVLNCEDETGRKLSELFLEKPSKKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLE-EFLEDFHLMFANARTY 81 (103)
T ss_pred HHHHHHHHHHHHhcCcCCCchhHHhcCCCCCCCCcCHHHHcCCCcCHHHHHHHHccCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 568999999994 557999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHH
Q 006378 357 FDKNSSESAAAVELRQIVLKA 377 (647)
Q Consensus 357 N~~~S~~~kaA~eLrklv~K~ 377 (647)
|+++|.+|.+|..|+++|...
T Consensus 82 n~~~s~i~~~A~~l~~~f~~~ 102 (103)
T cd05519 82 NQEGSIVYEDAVEMEKAFKKK 102 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999988753
No 28
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=1.1e-22 Score=187.53 Aligned_cols=99 Identities=28% Similarity=0.437 Sum_probs=94.3
Q ss_pred cchhHHHHHHHHH---hCccCCccccCCCCC-CCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhh
Q 006378 281 ESRPLVECIEIIR---SHKFGSFFERLDATK-ETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVF 356 (647)
Q Consensus 281 ~sq~L~~ILd~L~---shk~a~~F~~PVd~q-e~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vY 356 (647)
....|+.+|+.|. .|+.+++|..||+.. .+|+||++|++||||+||++||.++.|.++. +|..||.|||.||+.|
T Consensus 25 ~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~-~f~~Dv~Li~~Na~~y 103 (128)
T cd05529 25 ERERLISGLDKLLLSLQLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLENRYYRSLE-ALRHDVRLILSNAETF 103 (128)
T ss_pred HHHHHHHHHHHHHhcccCcccccccCCCCccccCCcHHHHcCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 3467899999999 999999999999999 9999999999999999999999999999999 9999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHh
Q 006378 357 FDKNSSESAAAVELRQIVLKAMTR 380 (647)
Q Consensus 357 N~~~S~~~kaA~eLrklv~K~m~k 380 (647)
|+++|.+|.+|..|+++|.+.+..
T Consensus 104 N~~~s~i~~~A~~l~~~~~~~l~~ 127 (128)
T cd05529 104 NEPNSEIAKKAKRLSDWLLRILSS 127 (128)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999988753
No 29
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=2.6e-22 Score=180.01 Aligned_cols=94 Identities=26% Similarity=0.414 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHhCc------cCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhh
Q 006378 283 RPLVECIEIIRSHK------FGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVF 356 (647)
Q Consensus 283 q~L~~ILd~L~shk------~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vY 356 (647)
+.|..||+.|..++ .+++|.++++..+.||||++|++||||.||+.||..|.|.++. +|..||.|||.||+.|
T Consensus 5 ~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~-ef~~D~~l~f~Na~~y 83 (106)
T cd05525 5 QVLKEICDAIITYKDSNGQSLAIPFINLPSKKKNPDYYERITDPVDLSTIEKQILTGYYKTPE-AFDSDMLKVFRNAEKY 83 (106)
T ss_pred HHHHHHHHHHHHhhccCCCcccHhhccCCCcccCCchhhhCCCCcCHHHHHHHHcCCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 46888999988865 5699999999999999999999999999999999999999999 9999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHH
Q 006378 357 FDKNSSESAAAVELRQIVLKA 377 (647)
Q Consensus 357 N~~~S~~~kaA~eLrklv~K~ 377 (647)
|+++|.+|.+|..|+++|...
T Consensus 84 n~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 84 YGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred CCCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999998753
No 30
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.87 E-value=3.3e-22 Score=178.20 Aligned_cols=93 Identities=23% Similarity=0.411 Sum_probs=88.1
Q ss_pred hhHHHHHHHHHhCc------cCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhh
Q 006378 283 RPLVECIEIIRSHK------FGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVF 356 (647)
Q Consensus 283 q~L~~ILd~L~shk------~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vY 356 (647)
+.|..||+.|+++. .+++|.++++..++|+||++|++||||.||+.||+.+.|.++. +|..||.|||.||+.|
T Consensus 3 ~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~lm~~Na~~y 81 (103)
T cd05517 3 QILEQLLEAVMTATDPSGRLISELFQKLPSKVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIE-DMEKDLDLMVKNAKTF 81 (103)
T ss_pred HHHHHHHHHHHHhhCcCCCChhHHHhcCCCCCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 56889999999875 5699999999999999999999999999999999999999999 9999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHH
Q 006378 357 FDKNSSESAAAVELRQIVLK 376 (647)
Q Consensus 357 N~~~S~~~kaA~eLrklv~K 376 (647)
|+++|.+|.+|..|+++|..
T Consensus 82 N~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 82 NEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999998864
No 31
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.87 E-value=3.4e-22 Score=178.25 Aligned_cols=93 Identities=19% Similarity=0.362 Sum_probs=86.4
Q ss_pred hhHHHHHHHHHhC------ccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhh
Q 006378 283 RPLVECIEIIRSH------KFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVF 356 (647)
Q Consensus 283 q~L~~ILd~L~sh------k~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vY 356 (647)
+.|..|++.|..+ +.+.+|..+++..++||||++|++||||.||+.||..+.|.++. +|..||.|||.||+.|
T Consensus 3 ~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~-ef~~D~~li~~Na~~y 81 (103)
T cd05518 3 KRMLALFLYVLEYREGSGRRLCDLFMEKPSKKDYPDYYKIILEPIDLKTIEHNIRNDKYATEE-ELMDDFKLMFRNARHY 81 (103)
T ss_pred HHHHHHHHHHHHhhccCCCcccHHHhcCCCcccCccHHHHcCCCcCHHHHHHHHCCCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 4577777777764 68899999999999999999999999999999999999999999 9999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHH
Q 006378 357 FDKNSSESAAAVELRQIVLK 376 (647)
Q Consensus 357 N~~~S~~~kaA~eLrklv~K 376 (647)
|+++|.+|.+|..|+++|..
T Consensus 82 N~~~s~i~~~A~~le~~~~~ 101 (103)
T cd05518 82 NEEGSQVYEDANILEKVLKE 101 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999998864
No 32
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.86 E-value=6.3e-22 Score=165.70 Aligned_cols=84 Identities=32% Similarity=0.425 Sum_probs=80.0
Q ss_pred HHHHHHHHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCCHHH
Q 006378 285 LVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNSSES 364 (647)
Q Consensus 285 L~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S~~~ 364 (647)
|..||+.|..|+.+++|..||+....|+|+.+|++||||.||+.||+.|.|.++. +|..||.|||.||+.||+++|.+|
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~-~f~~Dv~~i~~Na~~yn~~~s~~~ 79 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPKEYPDYYEIIKNPMDLSTIRKKLENGKYKSIE-EFEADVRLIFQNARRYNPPDSPIY 79 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTTTSTTHHHHSSSS--HHHHHHHHHTTSSSSHH-HHHHHHHHHHHHHHHHSCTTSHHH
T ss_pred CHHHHHHHHcCCCchhhcCCCChhhCCCHHHHHhhccchhhhhHHhhccchhhHH-HHHHHHHHHHHHHHHHCCCcCHHH
Confidence 6889999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHH
Q 006378 365 AAAVE 369 (647)
Q Consensus 365 kaA~e 369 (647)
.+|.+
T Consensus 80 ~~A~~ 84 (84)
T PF00439_consen 80 KAAEK 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99974
No 33
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.86 E-value=8.9e-22 Score=165.07 Aligned_cols=94 Identities=23% Similarity=0.378 Sum_probs=90.6
Q ss_pred hhHHHHHHHHHhC--ccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCC
Q 006378 283 RPLVECIEIIRSH--KFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKN 360 (647)
Q Consensus 283 q~L~~ILd~L~sh--k~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~ 360 (647)
..|..|++.|..| +.+++|..||+....|+||.+|++||||.||+.||..|.|.++. +|..||.|||.||+.||+.+
T Consensus 3 ~~~~~i~~~l~~~~~~~~~~F~~~~~~~~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~-~f~~D~~li~~Na~~~n~~~ 81 (99)
T cd04369 3 KKLRSLLDALKKLKRDLSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEYKSLE-EFEADVRLIFSNAKTYNGPG 81 (99)
T ss_pred HHHHHHHHHHHhhcccccHHHhcCCChhcCCCHHHHHhCcccHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCC
Confidence 4688999999999 99999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 006378 361 SSESAAAVELRQIVLKA 377 (647)
Q Consensus 361 S~~~kaA~eLrklv~K~ 377 (647)
+.++.+|..|+.+|.+.
T Consensus 82 ~~~~~~a~~l~~~~~~~ 98 (99)
T cd04369 82 SPIYKDAKKLEKLFEKL 98 (99)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999988765
No 34
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.86 E-value=9.9e-22 Score=175.11 Aligned_cols=94 Identities=21% Similarity=0.379 Sum_probs=88.3
Q ss_pred hhHHHHHHHHHh------CccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhh
Q 006378 283 RPLVECIEIIRS------HKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVF 356 (647)
Q Consensus 283 q~L~~ILd~L~s------hk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vY 356 (647)
+.+-.||+.|++ |+++++|.++++.+..|+||++|++||||+||+.||..+.|.++. +|..||.|||.||+.|
T Consensus 4 ~~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~-~f~~D~~li~~Na~~y 82 (104)
T cd05522 4 ARIKNILKGLRKERDENGRLLTLHFEKLPDKAREPEYYQEISNPISLDDIKKKVKRRKYKSFD-QFLNDLNLMFENAKLY 82 (104)
T ss_pred HHHHHHHHHHHHHhCcCCCcccHHHhcCCCccccCcHHHHhCCCcCHHHHHHHHccCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 457778888887 678999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHH
Q 006378 357 FDKNSSESAAAVELRQIVLKA 377 (647)
Q Consensus 357 N~~~S~~~kaA~eLrklv~K~ 377 (647)
|+++|.+|.+|..|+++|.+.
T Consensus 83 n~~~s~i~~~A~~l~~~f~~l 103 (104)
T cd05522 83 NENDSQEYKDAVLLEKEARLL 103 (104)
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999998764
No 35
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=1.2e-20 Score=169.43 Aligned_cols=94 Identities=24% Similarity=0.356 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHhCc------cCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhh
Q 006378 283 RPLVECIEIIRSHK------FGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVF 356 (647)
Q Consensus 283 q~L~~ILd~L~shk------~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vY 356 (647)
+.|..||+.|++.+ .+.+|..+++..++||||++|++||||+||++||+. |.++. +|..||.|||.||..|
T Consensus 4 ~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~-ef~~D~~li~~Na~~y 80 (106)
T cd05521 4 KKLKPLYDGIYTLKEENGIEIHPIFNVLPLRKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQ-EFVNDLAQIPWNARLY 80 (106)
T ss_pred HHHHHHHHHHHhhcCcCCCCchHhhhcCCccccCccHHHHhcCCCCHHHHHHHHHc--CCCHH-HHHHHHHHHHHHHHHH
Confidence 56888888888765 456999999989999999999999999999999998 99999 9999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHH
Q 006378 357 FDKNSSESAAAVELRQIVLKAMT 379 (647)
Q Consensus 357 N~~~S~~~kaA~eLrklv~K~m~ 379 (647)
|+++|++|.+|..|+++|...|-
T Consensus 81 N~~~s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 81 NTKGSVIYKYALILEKYINDVII 103 (106)
T ss_pred cCCCCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999988763
No 36
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.83 E-value=2.2e-20 Score=168.98 Aligned_cols=96 Identities=20% Similarity=0.268 Sum_probs=87.0
Q ss_pred HHHHHHHHHh-CccCCccccCCCC-----CCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcC
Q 006378 285 LVECIEIIRS-HKFGSFFERLDAT-----KETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFD 358 (647)
Q Consensus 285 L~~ILd~L~s-hk~a~~F~~PVd~-----qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~ 358 (647)
|-.++..+++ -+-.++|+-||.+ +++|+||.+|++||||+||+.||++|.|.++. ||..||.|||+||++||+
T Consensus 5 L~f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~-ef~~Dv~LI~~N~~~yNg 83 (109)
T cd05492 5 LKFIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLE-EFKADALLLLHNTAIFHG 83 (109)
T ss_pred HHHHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHHHCC
Confidence 5566777776 5667999999963 36999999999999999999999999999999 999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhh
Q 006378 359 KNSSESAAAVELRQIVLKAMTRN 381 (647)
Q Consensus 359 ~~S~~~kaA~eLrklv~K~m~k~ 381 (647)
++|.+|.+|..|.+.+...|.++
T Consensus 84 ~~s~~~~~A~~l~~d~~~el~Ei 106 (109)
T cd05492 84 ADSEQYDAARWLYRDTCHDLREL 106 (109)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888764
No 37
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.71 E-value=1.2e-17 Score=200.19 Aligned_cols=97 Identities=27% Similarity=0.373 Sum_probs=94.0
Q ss_pred HHHHHHHHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCCHHH
Q 006378 285 LVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNSSES 364 (647)
Q Consensus 285 L~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S~~~ 364 (647)
|-.||..|..|.++|||++||+...+|+||+||++||||.||+.||..|.|.+.. +|..||.|||.||..||.+ |.++
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~e-ef~~Di~lvf~Nc~~yN~~-s~i~ 1383 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPKEVPDYYDIIKKPMDLSTIREKLSKGIYPSPE-EFATDIELVFDNCETYNED-SEIG 1383 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChhhcccHHHHhcChhHHHHHHHHHhcccCCCHH-HHHHHHHHHHHHHHHhccc-hhhh
Confidence 8899999999999999999999999999999999999999999999999999999 9999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 006378 365 AAAVELRQIVLKAMTRNTF 383 (647)
Q Consensus 365 kaA~eLrklv~K~m~k~l~ 383 (647)
++...|+++|.+.++..+.
T Consensus 1384 ~ag~~l~~ff~~~~~~~~~ 1402 (1404)
T KOG1245|consen 1384 RAGTCLRRFFHKRWRKKFP 1402 (1404)
T ss_pred hhcchHHHHHHHHHHhhcC
Confidence 9999999999998877663
No 38
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.69 E-value=7.9e-17 Score=146.35 Aligned_cols=97 Identities=16% Similarity=0.208 Sum_probs=88.3
Q ss_pred hhHHHHHHHHHhCc------cCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhh
Q 006378 283 RPLVECIEIIRSHK------FGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVF 356 (647)
Q Consensus 283 q~L~~ILd~L~shk------~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vY 356 (647)
+.|..|++.|++|. ++.+|.+... -.++||.+|++||||.+|+.||+.|.|.++. +|..||.|||+||..|
T Consensus 6 ~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~--~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld-~~~~D~~lmf~NAr~y 82 (110)
T cd05526 6 ELLATLFVSVMNHQDEEGRCYSDSLAELPE--LAVDGVGPKKIPLTLDIIKRNVDKGRYRRLD-KFQEDMFEVLERARRL 82 (110)
T ss_pred HHHHHHHHHHHhccCCCCCCchHHHHHCCC--cccCchhhhcCCccHHHHHHHHHcCCcCcHH-HHHHHHHHHHHHHHHh
Confidence 56899999999997 6677888777 4578889999999999999999999999999 9999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHhhc
Q 006378 357 FDKNSSESAAAVELRQIVLKAMTRNT 382 (647)
Q Consensus 357 N~~~S~~~kaA~eLrklv~K~m~k~l 382 (647)
|.++|.+|..|.+|+.+|.+...++.
T Consensus 83 N~~~S~iy~dA~eLq~~f~~~rd~~~ 108 (110)
T cd05526 83 SRTDSEIYEDAVELQQFFIKIRDELC 108 (110)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998776543
No 39
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.67 E-value=6.9e-17 Score=170.90 Aligned_cols=91 Identities=30% Similarity=0.423 Sum_probs=86.2
Q ss_pred CccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHH
Q 006378 295 HKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNSSESAAAVELRQIV 374 (647)
Q Consensus 295 hk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S~~~kaA~eLrklv 374 (647)
+...++|..+++..++|+||.||+.||||.||+++|..+.|.++. +|..||+|||+||..||.+++.+|.+|..|.+++
T Consensus 163 ~~~s~~F~~~p~k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~e-ef~~D~~lM~~N~~~yN~~~s~v~~~a~~l~~~~ 241 (371)
T COG5076 163 RFLSSIFLGLPSKREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFE-EFVSDLNLMFDNCKLYNGPDSSVYVDAKELEKYF 241 (371)
T ss_pred cccccccccCCccccCCChheeecchhhHHHHHHHHHhhhhhhHH-HHHHHHHHHHHhhhhccCCCcchhhhhHHHHHHH
Confidence 568899999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCC
Q 006378 375 LKAMTRNTFDPN 386 (647)
Q Consensus 375 ~K~m~k~l~k~~ 386 (647)
..+|........
T Consensus 242 ~~~i~~~~~~~~ 253 (371)
T COG5076 242 LKLIEEIPEEML 253 (371)
T ss_pred HHHHHhccccch
Confidence 999997664443
No 40
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.54 E-value=4.1e-15 Score=168.15 Aligned_cols=99 Identities=21% Similarity=0.374 Sum_probs=94.3
Q ss_pred hhHHHHHHHHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCCH
Q 006378 283 RPLVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNSS 362 (647)
Q Consensus 283 q~L~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S~ 362 (647)
..+..||+.|.+|..+|||.+||...++||||.+|++||||.||+.+|..+.|.... .|+.|+.+||+||++||+.++.
T Consensus 609 s~~~~il~~l~~h~~awPf~~Pv~~~e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~-~f~ad~~~vf~ncr~yn~~~~~ 687 (720)
T KOG1472|consen 609 SAIQNILDQLQNHGDAWPFLKPVNKKEVPDYYDVIKHPMDLRTMQNRLKDNQYTEVE-LFMADVVRVFANCRMYNGSDTQ 687 (720)
T ss_pred HHHHhHHhhhhcCCccCCccCccccccCCcHHHHhcccccHHHHhhhccccchhhHH-HHHHHHHHHHhhhhccCCccch
Confidence 357789999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 006378 363 ESAAAVELRQIVLKAMTRNT 382 (647)
Q Consensus 363 ~~kaA~eLrklv~K~m~k~l 382 (647)
+|+.|..|..+|...|...+
T Consensus 688 y~k~~~~le~~~~~k~~~~i 707 (720)
T KOG1472|consen 688 YYKCAQALEKFFLFKLNELI 707 (720)
T ss_pred heecccchhhhhcchhhhhh
Confidence 99999999999998887653
No 41
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.26 E-value=2.5e-12 Score=117.25 Aligned_cols=76 Identities=11% Similarity=-0.019 Sum_probs=61.2
Q ss_pred hhHHHHHHHHHhCccCCccccCCCC--CCCCchhhhhcCCCCHHHHHHHHhcCCc-------CCcHHHHHHHHHHHHHHh
Q 006378 283 RPLVECIEIIRSHKFGSFFERLDAT--KETPDYRSIVRQHTDLETIRTRLEENWY-------SGSNSSFFHDLLLLFNNV 353 (647)
Q Consensus 283 q~L~~ILd~L~shk~a~~F~~PVd~--qe~PDYy~IIkrPMDL~TIrsKLesg~Y-------~S~~~EF~rDLlLmf~NA 353 (647)
+.|+.+|..+..|+.+|+|..||++ .++||||++|++||||+||+.+|..+.| .--. .+..++..++.||
T Consensus 6 ~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 84 (114)
T cd05494 6 ERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQE-DPADKQIDDEGRR 84 (114)
T ss_pred HHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHccccccccccccccc-ccccccccccccc
Confidence 4577788888888899999999999 7999999999999999999999999633 3333 5666667777776
Q ss_pred hhhcCC
Q 006378 354 IVFFDK 359 (647)
Q Consensus 354 ~vYN~~ 359 (647)
.-|+..
T Consensus 85 ~~~~~~ 90 (114)
T cd05494 85 SPSNIY 90 (114)
T ss_pred Cccccc
Confidence 666554
No 42
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=99.12 E-value=6.8e-11 Score=139.04 Aligned_cols=102 Identities=25% Similarity=0.380 Sum_probs=95.3
Q ss_pred hhHHHHHHHHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCCH
Q 006378 283 RPLVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNSS 362 (647)
Q Consensus 283 q~L~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S~ 362 (647)
..|..+|+.|.......+|..||+..++|||.+||++||||.||+.++.+|.|.++. +|..|+.||+.||+.||..++.
T Consensus 568 kLl~~~l~~lq~kD~~gif~~pvd~~e~pdy~~iik~pmd~~t~~~kl~s~~y~tle-~ieed~~l~~~nc~~yn~~dtv 646 (1051)
T KOG0955|consen 568 KLLQKSLDKLQKKDSYGIFAEPVDPSELPDYIDIIKKPMDFFTMRLKLESGAYSTLE-PIEEDVNLIVSNCMEYNAKDTV 646 (1051)
T ss_pred HHHHHHHHHhhcccccCceeeccChhhcccHHHHhcCccchhhhhhhccccchhhhh-HHHHhHhHhHhHHHHhhccCee
Confidence 445689999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCC
Q 006378 363 ESAAAVELRQIVLKAMTRNTFDP 385 (647)
Q Consensus 363 ~~kaA~eLrklv~K~m~k~l~k~ 385 (647)
+|.+|..|++++.+.+.+..+.+
T Consensus 647 ~~r~av~~~e~~~~~~~~arke~ 669 (1051)
T KOG0955|consen 647 YYRAAVRLRELIKKDFRNARKEP 669 (1051)
T ss_pred hHhhhHHHHhhhhhHHHhcccch
Confidence 99999999999988876655444
No 43
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.92 E-value=8.8e-10 Score=130.34 Aligned_cols=94 Identities=19% Similarity=0.300 Sum_probs=82.5
Q ss_pred HHHHHHHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCCHHHH
Q 006378 286 VECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNSSESA 365 (647)
Q Consensus 286 ~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S~~~k 365 (647)
-.|+.++.+-+.+|+|+.||+..-+|+||..|++||||+||..++..+.|.+.+ +|.+|+.||+.||..||+..+.+..
T Consensus 1388 d~~vs~~~~ipes~~f~~~v~~k~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~-e~l~dv~~i~~n~~~~ng~e~~y~~ 1466 (1563)
T KOG0008|consen 1388 DNIVSQMKEIPESWPFHEPVNKKRVPDYYKKIKNPMDLETILKNIPPHKYDSRS-EFLDDVNLIYVNSVEYNGAESAYTK 1466 (1563)
T ss_pred hhHHHHHHhcchhcccccccchhhchHHHHHhcChhhHHHHhhcCCccccccHH-HHhhhhHhhcccceeecCccccccH
Confidence 344455667789999999999999999999999999999999999999999999 9999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHh
Q 006378 366 AAVELRQIVLKAMTR 380 (647)
Q Consensus 366 aA~eLrklv~K~m~k 380 (647)
-|..+-.+....+.+
T Consensus 1467 k~~k~~ev~~~~~~e 1481 (1563)
T KOG0008|consen 1467 KARKIGEVGLANLLE 1481 (1563)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888776655544433
No 44
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.86 E-value=3e-09 Score=98.40 Aligned_cols=44 Identities=23% Similarity=0.392 Sum_probs=40.8
Q ss_pred hcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCC
Q 006378 317 VRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNS 361 (647)
Q Consensus 317 IkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S 361 (647)
+-.||||+||+.||.+|+|.+.. +|+.||.|||+||..||.++.
T Consensus 61 ~~y~MDL~tIe~RL~ng~Y~tp~-~F~~DiklI~~Nc~~ynd~dr 104 (119)
T cd05491 61 KFYNMDLDTIEERLWNGYYATPK-DFLKDIKRIVRDAKTIGDRER 104 (119)
T ss_pred eEeccCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHhCCHHH
Confidence 34599999999999999999999 999999999999999998843
No 45
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.74 E-value=1.3e-08 Score=120.82 Aligned_cols=102 Identities=19% Similarity=0.242 Sum_probs=94.9
Q ss_pred ccchhHHHHHHHHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCC
Q 006378 280 AESRPLVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDK 359 (647)
Q Consensus 280 ~~sq~L~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~ 359 (647)
+-+.-|..|+++++..+...+|..||+..+++|||.||+.||||+||+..|....|.+-. .|+.|+.|||.|..+||++
T Consensus 1261 ~~ss~l~~i~n~~~~~~~t~~f~~Pv~~k~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~-~fle~~~~~~~ns~~yng~ 1339 (1563)
T KOG0008|consen 1261 SLSSILETIINQARSSPNTYPFPTPVNAKEVKDYYRVITPPMDLQTQKKLVRKRLYESRE-HFLEELPLIVSNSTKYNGP 1339 (1563)
T ss_pred ecccchHHHHHHHhcCCCCcCCCCccchhhccchhhccCCCcchHHHHHHHHHHHHHHHH-HHHHHhHHHhhchhhhcCc
Confidence 445567888999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhc
Q 006378 360 NSSESAAAVELRQIVLKAMTRNT 382 (647)
Q Consensus 360 ~S~~~kaA~eLrklv~K~m~k~l 382 (647)
.+.+...+..|..++...|...-
T Consensus 1340 ~~~~t~~~q~mls~~~~~~~eke 1362 (1563)
T KOG0008|consen 1340 LASLTRQQQSMLSLCFEKLKEKE 1362 (1563)
T ss_pred hHHHHHHHHHHHHHHHHhhchhH
Confidence 99999999999998888876654
No 46
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.72 E-value=1.5e-08 Score=118.14 Aligned_cols=100 Identities=22% Similarity=0.381 Sum_probs=90.7
Q ss_pred hhHHHHHHHHHhC------ccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhh
Q 006378 283 RPLVECIEIIRSH------KFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVF 356 (647)
Q Consensus 283 q~L~~ILd~L~sh------k~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vY 356 (647)
.++..|+.....| ....+|.......+.||||.||+.|||+..|..+|..+.|.+.. ++..||++||.||..|
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~na~~~ 1105 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKLPSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLK-ELEKDFMLLFNNARTY 1105 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccCcccccccchHHHhcchhhHHHHhhhccccccchHH-HHHHHHHhhcchhhhh
Confidence 5688888777744 46788999988999999999999999999999999999999999 9999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHhhcC
Q 006378 357 FDKNSSESAAAVELRQIVLKAMTRNTF 383 (647)
Q Consensus 357 N~~~S~~~kaA~eLrklv~K~m~k~l~ 383 (647)
|..+|.+|..|..|..++......+..
T Consensus 1106 ~~egs~~y~d~~~l~~~~~~~~~~~~~ 1132 (1157)
T KOG0386|consen 1106 NEEGSRVYEDAIVLQSVFKSARQEISK 1132 (1157)
T ss_pred ccCCceechhHHHHHHHHhhhHHHHhc
Confidence 999999999999999988877766653
No 47
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.68 E-value=2.4e-08 Score=112.64 Aligned_cols=95 Identities=21% Similarity=0.314 Sum_probs=87.6
Q ss_pred hhHHHHHHHHHhCc------cCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhh
Q 006378 283 RPLVECIEIIRSHK------FGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVF 356 (647)
Q Consensus 283 q~L~~ILd~L~shk------~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vY 356 (647)
..+..||..|+.+. +...|.+..+....|+||.+|-+||-|..|+.||..+.|.+.+ .|+.|++|||.||..|
T Consensus 55 ~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~-~f~~D~~lm~ena~~~ 133 (629)
T KOG1827|consen 55 PKFKTILASLLDLKDDEGKQLFDKFEKLPSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLS-FFQLDFLLMTENARLY 133 (629)
T ss_pred HHHHHHHHHHHhhccccCcccchhHhhccccccCCCcceeecCcccHHHHHHHHHhcccccHH-HHHHHHHHHHHHHHHh
Confidence 45778888888875 5567999999999999999999999999999999999999999 9999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHH
Q 006378 357 FDKNSSESAAAVELRQIVLKAM 378 (647)
Q Consensus 357 N~~~S~~~kaA~eLrklv~K~m 378 (647)
|..++.+|+++..|...|....
T Consensus 134 n~~ds~~~~~s~~l~~~~~~~~ 155 (629)
T KOG1827|consen 134 NRPDSLIYKDSGELEKYFISLE 155 (629)
T ss_pred cCcchhhhhhhhhhhcchhhhh
Confidence 9999999999999999888754
No 48
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=98.67 E-value=4.1e-09 Score=119.83 Aligned_cols=95 Identities=23% Similarity=0.340 Sum_probs=86.6
Q ss_pred HHHHhCccCCccccCCCCC--CCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCCHHHHHH
Q 006378 290 EIIRSHKFGSFFERLDATK--ETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNSSESAAA 367 (647)
Q Consensus 290 d~L~shk~a~~F~~PVd~q--e~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S~~~kaA 367 (647)
+.++.|.++|+|..||+.. ..|+||.+|++|||++||..+|++.+|.+.. +..+||..+|.||.+||...-.++.++
T Consensus 2 ~~~~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~-~~~~~f~~~~sn~~~~~~~~~~v~~~~ 80 (640)
T KOG1474|consen 2 KEARKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSAS-ECIADFKTKFSNCYLFNDSGDDVVRMK 80 (640)
T ss_pred cccccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHh-hhhhhccccccchhcccCCccchhhcc
Confidence 3457899999999999974 8999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCC
Q 006378 368 VELRQIVLKAMTRNTFDP 385 (647)
Q Consensus 368 ~eLrklv~K~m~k~l~k~ 385 (647)
..+..+|.+.+.....+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~ 98 (640)
T KOG1474|consen 81 QSLEKLFPKKLRSMPSDE 98 (640)
T ss_pred ccchhhcccccccccccc
Confidence 999999988777665443
No 49
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.62 E-value=6.2e-09 Score=111.40 Aligned_cols=98 Identities=17% Similarity=0.131 Sum_probs=89.6
Q ss_pred hhHHHHHHHHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCCH
Q 006378 283 RPLVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNSS 362 (647)
Q Consensus 283 q~L~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S~ 362 (647)
..+-++|..+-+...-..|..||.+.-.|+|.+||..|||+.||+.+|+.+.|.+.. +|.-|..||++||++||..++.
T Consensus 22 ~~~ehhlrkl~sKdp~q~fafplt~~map~y~~iis~Pmd~~t~r~kidd~~yl~L~-~m~~d~kl~~~na~~yn~~~Tv 100 (418)
T KOG1828|consen 22 GDAEHHLRKLPSKDPKQKFAFPLTDKMAPNYLEIISEPMDRITKRSKIDDTRYLVLS-QMEFDRKLPDGNATLYNLHPTV 100 (418)
T ss_pred hhHHHHHHhccccChhhhhccccchhhccchHhhhhcccccccccccCCCccceech-hhhhhhcccccchhhhhcCCcc
Confidence 346677788888888889999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 006378 363 ESAAAVELRQIVLKAMTRN 381 (647)
Q Consensus 363 ~~kaA~eLrklv~K~m~k~ 381 (647)
++.+|..|+.+...+.+..
T Consensus 101 ~~~aaKrL~~v~~~~~qe~ 119 (418)
T KOG1828|consen 101 PIVAAKRLCPVRLGMTQER 119 (418)
T ss_pred ccccccccchhhcchhhHH
Confidence 9999999998887765544
No 50
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.52 E-value=8.4e-08 Score=109.81 Aligned_cols=68 Identities=22% Similarity=0.413 Sum_probs=65.5
Q ss_pred hCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCCH
Q 006378 294 SHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNSS 362 (647)
Q Consensus 294 shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S~ 362 (647)
.|..+++|..+|+..++|+||.||+-||||.|+-.++..+.|.+.. +|..||++||.||..||...+.
T Consensus 300 ~~~~s~~~~~kvs~~~a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~-~fv~d~~~~~~n~~~~n~ee~~ 367 (720)
T KOG1472|consen 300 RTEHSTPFLEKVSKEDAPNYYQIIKAPMDLSTELKKLKSGPYCSKE-EFVNDLMLIWRNCEKYNSEESH 367 (720)
T ss_pred ccccccccccCCChhhCcchHHhhhcchHHHHHHHHhccccccchh-HHHHHHHHHHhcchhhccccch
Confidence 5999999999999999999999999999999999999999999999 9999999999999999997654
No 51
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.15 E-value=1.3e-06 Score=94.13 Aligned_cols=88 Identities=13% Similarity=0.032 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCCH
Q 006378 283 RPLVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNSS 362 (647)
Q Consensus 283 q~L~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S~ 362 (647)
+.+-...+.+..-....+|..++....+|.|.-||++|+|+.|+..|+.++.|.| - +|..|+.|||.||++||.+++.
T Consensus 211 ~l~~~q~~kl~~~~p~~~lnyg~tas~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~-~f~~D~kl~~l~amT~gehsk~ 288 (418)
T KOG1828|consen 211 QLQTLQEDKLNRVDPVAYLNYGPTASFAPGYSMTITEVEPPGTYGDKSSANDYES-L-SFTQDRKLIALKAVTNGEHSKS 288 (418)
T ss_pred HHHHHHHHHhcccCchhhhcccchhhhcccccccccccCCCcchhhhhhhhhhhh-h-hhhcccchhhHHHHhcCCcchH
Confidence 3445556677777788899999999999999999999999999999999999999 5 9999999999999999999999
Q ss_pred HHHHHHHHHH
Q 006378 363 ESAAAVELRQ 372 (647)
Q Consensus 363 ~~kaA~eLrk 372 (647)
+|.+|..+..
T Consensus 289 yyelank~lh 298 (418)
T KOG1828|consen 289 YYELANKQLH 298 (418)
T ss_pred HHHHHHhhhh
Confidence 9999997654
No 52
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.74 E-value=3.1e-05 Score=60.05 Aligned_cols=45 Identities=31% Similarity=0.716 Sum_probs=39.6
Q ss_pred cccchhHHHHHHHHHhhccCCChhHHHHHHh-hhcCCCCCCCHHHHHHHHHHH
Q 006378 12 QAWGTKEELLLACAVHRYGTQNWISVATEVQ-KRSSKFQLLTPLSCQQKYNDL 63 (647)
Q Consensus 12 ~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~-~r~~~~~~~t~~~C~~k~~~L 63 (647)
..|..-|+.+|.-||..||..+|+.||..|- .|| +..|+.+|..|
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt-------~~qc~~~~~~~ 47 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRT-------AKQCRSRYQNL 47 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSST-------HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCC-------HHHHHHHHHhh
Confidence 4688999999999999999999999999998 665 59999999986
No 53
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=97.60 E-value=8.1e-05 Score=55.06 Aligned_cols=48 Identities=31% Similarity=0.707 Sum_probs=42.5
Q ss_pred cccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHHhhh
Q 006378 12 QAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYNDLKRR 66 (647)
Q Consensus 12 ~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L~rR 66 (647)
..|..-|+.+|..+|..||..+|..||..|..|+ +..|+.+|..|.++
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt-------~~~~~~~~~~~~~~ 49 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIAKELPGRT-------AEQCRERWNNLLKP 49 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCC-------HHHHHHHHHHHcCC
Confidence 4699999999999999999999999999987555 59999999988653
No 54
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=97.52 E-value=2.6e-05 Score=83.42 Aligned_cols=97 Identities=25% Similarity=0.309 Sum_probs=88.9
Q ss_pred HHHHHHHHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCCHHH
Q 006378 285 LVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNSSES 364 (647)
Q Consensus 285 L~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S~~~ 364 (647)
...++..+..|-.+|+|.+++...+.|+|+++|..+||+.|++-+|..+.|.... +|.+|..++|+||..||.....++
T Consensus 268 ~~~~i~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 346 (371)
T COG5076 268 ESVLITNSQAHVGAWPFLRPVSDEEVPDYYKDIRDPMDLSTKELKLRNNYYRPEE-TFVRDAKLFFDNCVMYNGEVTDYY 346 (371)
T ss_pred hhhcccccccccccccccccCCcccccchhhhhhcccccccchhhhhcccCCCcc-ccccccchhhhcccccchhhhhhh
Confidence 3344455578999999999999999999999999999999999999999999997 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 006378 365 AAAVELRQIVLKAMTRNT 382 (647)
Q Consensus 365 kaA~eLrklv~K~m~k~l 382 (647)
..+..+..+|.+.++-..
T Consensus 347 ~~~~~~~~~~~~~~~~~~ 364 (371)
T COG5076 347 KNANVLEDFVIKKTRLIR 364 (371)
T ss_pred hhccchhhhHhhhhhhhh
Confidence 999999999998887544
No 55
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=97.12 E-value=0.00067 Score=49.51 Aligned_cols=44 Identities=36% Similarity=0.841 Sum_probs=39.2
Q ss_pred ccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 006378 13 AWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYNDL 63 (647)
Q Consensus 13 ~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L 63 (647)
.|..-|+-+|..+|..||..+|+.||..|..|+ +..|+.+|..|
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs-------~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRT-------PKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCC-------HHHHHHHHHHh
Confidence 488899999999999999999999999998765 58999999765
No 56
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=96.27 E-value=0.0039 Score=49.96 Aligned_cols=49 Identities=29% Similarity=0.748 Sum_probs=38.4
Q ss_pred cchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHH-HhhhhcCC
Q 006378 14 WGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYND-LKRRFSGN 70 (647)
Q Consensus 14 WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~-L~rRfs~~ 70 (647)
|..=|+-+|.-+|..||. +|..||..|-.|+ +..|+.||.. |+..++.+
T Consensus 1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~l~~Rt-------~~~~~~r~~~~l~~~~~~~ 50 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN-DWKKIAEHLGNRT-------PKQCRNRWRNHLRPKISRG 50 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS--HHHHHHHSTTS--------HHHHHHHHHHTTSTTSTSS
T ss_pred CCHHHHHHHHHHHHHHCc-CHHHHHHHHCcCC-------HHHHHHHHHHHCcccccCC
Confidence 666788999999999995 8999999985465 5999999999 87665553
No 57
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=95.96 E-value=0.011 Score=56.38 Aligned_cols=62 Identities=18% Similarity=0.253 Sum_probs=52.9
Q ss_pred CCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHhhc
Q 006378 320 HTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNSSESAAAVELRQIVLKAMTRNT 382 (647)
Q Consensus 320 PMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S~~~kaA~eLrklv~K~m~k~l 382 (647)
|.||+-|++||+.|.|.++. +|-.||..|+.=++.=-.-...+-++-..+.-+|.+.|...+
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~-~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf 120 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVL-DFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVF 120 (131)
T ss_pred cccHHHHHHHHhccceehHH-HHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhc
Confidence 89999999999999999999 999999999998887666555555556677888889988766
No 58
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=94.31 E-value=0.04 Score=63.59 Aligned_cols=53 Identities=36% Similarity=0.777 Sum_probs=46.0
Q ss_pred CcccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHH-HHhhhhcCC
Q 006378 11 KQAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYN-DLKRRFSGN 70 (647)
Q Consensus 11 ~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~-~L~rRfs~~ 70 (647)
.+.|.|-|+.+|.|||.|+|..+|--|-.+|=.|+- .-||-||. .|++|--.+
T Consensus 360 hg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSd-------sQcR~RY~nvL~~s~K~~ 413 (939)
T KOG0049|consen 360 HGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSD-------SQCRERYTNVLNRSAKVE 413 (939)
T ss_pred CCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccH-------HHHHHHHHHHHHHhhccC
Confidence 467999999999999999999999999999988886 89999995 577765443
No 59
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=92.95 E-value=0.16 Score=50.08 Aligned_cols=105 Identities=27% Similarity=0.365 Sum_probs=64.2
Q ss_pred CcccchhHHHHHHHHHhhcc----C--CChhHHHHHHhhhcCCCCCCCHHHHHHHHHHH-hhhhcCCCc-------ccc-
Q 006378 11 KQAWGTKEELLLACAVHRYG----T--QNWISVATEVQKRSSKFQLLTPLSCQQKYNDL-KRRFSGNDA-------VSI- 75 (647)
Q Consensus 11 ~~~WgT~EELlLa~AV~Rhg----~--~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L-~rRfs~~~~-------~~~- 75 (647)
.-+|..=|+||||..|+||= | +.|+-|+.-| +| |+..|+.||+-. +.+|-.... ...
T Consensus 4 QDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~R-------TsAACGFRWNs~VRkqY~~~i~~AKkqRk~~~~ 75 (161)
T TIGR02894 4 QDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NR-------TAAACGFRWNAYVRKQYEEAIELAKKQRKELKR 75 (161)
T ss_pred ccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cc-------cHHHhcchHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 35799999999999999993 2 4677777544 34 456666666543 335533210 000
Q ss_pred -ccCCC-CCccchHHHHHHh--HHHHHHHHHhhhccchhhHHHHHHHHHHHh
Q 006378 76 -SADNS-DDAIPWLDQLKKL--RVAELKRELQLFDISIVSLQLKVERLIEER 123 (647)
Q Consensus 76 -~~~~~-~~~~~w~eeLRkl--RvaeLrreve~~d~sI~sLq~kvk~L~~er 123 (647)
...-. .+.+..|..|... .+..|+.|.++-..-+..||.+++.|+.|-
T Consensus 76 ~~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~ 127 (161)
T TIGR02894 76 EAGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKEL 127 (161)
T ss_pred CcccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 2346677777654 455666777777777777777777777764
No 60
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=92.61 E-value=0.16 Score=43.24 Aligned_cols=56 Identities=23% Similarity=0.430 Sum_probs=40.0
Q ss_pred ccchhHHHHHHHHHhhcc----C---------CChhHHHHHHhhhcCCCCCCCHHHHHHHHHHHhhhhcCCC
Q 006378 13 AWGTKEELLLACAVHRYG----T---------QNWISVATEVQKRSSKFQLLTPLSCQQKYNDLKRRFSGND 71 (647)
Q Consensus 13 ~WgT~EELlLa~AV~Rhg----~---------~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L~rRfs~~~ 71 (647)
.|..-|-++|.-++.-|. + .-|..||.+|+.+-. ..|+..|+.||..|.++|-...
T Consensus 3 ~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~---~rt~~qc~~Kw~~L~~~Yk~~k 71 (90)
T PF13837_consen 3 NWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGY---NRTPEQCRNKWKNLKKKYKKIK 71 (90)
T ss_dssp SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC-------HHHHHHHHHHHHHHHHCSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHHHHHHH
Confidence 477777777776666521 1 259999999997643 5799999999999999998764
No 61
>PLN03212 Transcription repressor MYB5; Provisional
Probab=90.97 E-value=0.26 Score=51.47 Aligned_cols=45 Identities=20% Similarity=0.513 Sum_probs=37.8
Q ss_pred CcccchhHHHHHHHHHhhccCCChhHHHHHHh-hhcCCCCCCCHHHHHHHHHH
Q 006378 11 KQAWGTKEELLLACAVHRYGTQNWISVATEVQ-KRSSKFQLLTPLSCQQKYND 62 (647)
Q Consensus 11 ~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~-~r~~~~~~~t~~~C~~k~~~ 62 (647)
...|..=|.=+|.-+|.+||..+|..||..+- .|+ +..|+.||..
T Consensus 25 Rg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT-------~KQCReRW~N 70 (249)
T PLN03212 25 RGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRC-------GKSCRLRWMN 70 (249)
T ss_pred CCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCC-------cchHHHHHHH
Confidence 45688889999999999999999999998763 454 5999999974
No 62
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=90.61 E-value=0.12 Score=62.93 Aligned_cols=65 Identities=15% Similarity=0.120 Sum_probs=59.1
Q ss_pred CccCCccccCCCCC-----CCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHH--HHHHHHHHhhhhcCCC
Q 006378 295 HKFGSFFERLDATK-----ETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFH--DLLLLFNNVIVFFDKN 360 (647)
Q Consensus 295 hk~a~~F~~PVd~q-----e~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~r--DLlLmf~NA~vYN~~~ 360 (647)
++....|-.|++.. .+++|-.+|+++||+...-.+++.+.|.++. +|.. ++.|||.|++.||+..
T Consensus 530 ~R~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~-~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 530 RRSSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVR-SFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred CccccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHH-hhhcccchhhhcCcHHhcCCCc
Confidence 34578899999965 2569999999999999999999999999999 9999 9999999999999975
No 63
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=89.39 E-value=0.29 Score=54.98 Aligned_cols=46 Identities=28% Similarity=0.600 Sum_probs=41.7
Q ss_pred CCcccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 006378 10 EKQAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYNDL 63 (647)
Q Consensus 10 ~~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L 63 (647)
....|.--|.|||.-+|-++| ++|+.||.-|+++++ +.|-++|-.|
T Consensus 278 ~dk~WS~qE~~LLLEGIe~yg-DdW~kVA~HVgtKt~-------EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYG-DDWDKVARHVGTKTK-------EQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHhh-hhHHHHHHHhCCCCH-------HHHHHHHHcC
Confidence 556899999999999999999 589999999998886 9999999776
No 64
>PLN03091 hypothetical protein; Provisional
Probab=89.10 E-value=0.43 Score=53.43 Aligned_cols=44 Identities=27% Similarity=0.559 Sum_probs=37.4
Q ss_pred CcccchhHHHHHHHHHhhccCCChhHHHHHHh-hhcCCCCCCCHHHHHHHHH
Q 006378 11 KQAWGTKEELLLACAVHRYGTQNWISVATEVQ-KRSSKFQLLTPLSCQQKYN 61 (647)
Q Consensus 11 ~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~-~r~~~~~~~t~~~C~~k~~ 61 (647)
...|..-|+-+|.-+|..||..+|..||..+- .| |+..||.||.
T Consensus 14 Kg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gR-------T~KQCRERW~ 58 (459)
T PLN03091 14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQR-------CGKSCRLRWI 58 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCc-------CcchHhHHHH
Confidence 45698889999999999999999999997653 34 5589999986
No 65
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=88.96 E-value=0.65 Score=51.85 Aligned_cols=48 Identities=27% Similarity=0.564 Sum_probs=43.1
Q ss_pred CCCCcccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHH
Q 006378 8 FPEKQAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYND 62 (647)
Q Consensus 8 ~~~~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~ 62 (647)
+.....|+--|||||.=|+.=.|+++|.-||.=|=+++- +.|+.-|.-
T Consensus 69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtk-------eeck~hy~k 116 (438)
T KOG0457|consen 69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTK-------EECKEHYLK 116 (438)
T ss_pred CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccch-------HHHHHHHHH
Confidence 567789999999999999999999999999998876665 999998864
No 66
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=87.76 E-value=0.39 Score=57.22 Aligned_cols=60 Identities=27% Similarity=0.449 Sum_probs=51.7
Q ss_pred cCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHH
Q 006378 318 RQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNSSESAAAVELRQIVLKAM 378 (647)
Q Consensus 318 krPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S~~~kaA~eLrklv~K~m 378 (647)
--|.-|+.|+.+|++.+|.+.. .|..|+-.|..||.+|++.+-.+...+..|...|...+
T Consensus 1051 pvpls~evi~~rlEn~yYrs~e-~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~Tl 1110 (1113)
T KOG0644|consen 1051 PVPLSLEVIRSRLENNYYRSQE-ALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRTL 1110 (1113)
T ss_pred CCcccHHHHHHHHHhhhhhhhH-hhhcchhhhhcccceeecccccHHHHhhhcchhhhhhc
Confidence 3477899999999999999999 99999999999999999999877666667777666544
No 67
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=85.25 E-value=1.1 Score=48.65 Aligned_cols=48 Identities=27% Similarity=0.493 Sum_probs=42.8
Q ss_pred CCCCcccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHH
Q 006378 8 FPEKQAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYND 62 (647)
Q Consensus 8 ~~~~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~ 62 (647)
.-+.+.||.-|||||.-+.---|.++|.-||.=|-+|.- +.|+..|-.
T Consensus 60 pI~~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~k-------ee~k~HylK 107 (432)
T COG5114 60 PIGEEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAK-------EEIKSHYLK 107 (432)
T ss_pred cccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhh-------HHHHHHHHH
Confidence 456789999999999999999999999999999998886 899987754
No 68
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=83.59 E-value=1 Score=51.39 Aligned_cols=50 Identities=32% Similarity=0.557 Sum_probs=43.6
Q ss_pred CCCCCCcccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 006378 6 NNFPEKQAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYNDL 63 (647)
Q Consensus 6 ~~~~~~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L 63 (647)
+..+.+..|.--|.|||.-||..|| .+|..||.=|.+|+. ..|-+||..|
T Consensus 248 ~~~~~~~~WT~qE~lLLLE~ie~y~-ddW~kVa~hVg~ks~-------eqCI~kFL~L 297 (506)
T KOG1279|consen 248 IGESARPNWTEQETLLLLEAIEMYG-DDWNKVADHVGTKSQ-------EQCILKFLRL 297 (506)
T ss_pred ccccCCCCccHHHHHHHHHHHHHhc-ccHHHHHhccCCCCH-------HHHHHHHHhc
Confidence 3567788899999999999999999 589999998887765 9999999766
No 69
>PLN03212 Transcription repressor MYB5; Provisional
Probab=81.34 E-value=1.8 Score=45.46 Aligned_cols=49 Identities=18% Similarity=0.262 Sum_probs=39.8
Q ss_pred CcccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHHhhhh
Q 006378 11 KQAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYNDLKRRF 67 (647)
Q Consensus 11 ~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L~rRf 67 (647)
...|..-|+.+|..+|..||. .|-.||..|--|+. ..|+-+|..+-+++
T Consensus 78 kgpWT~EED~lLlel~~~~Gn-KWs~IAk~LpGRTD-------nqIKNRWns~LrK~ 126 (249)
T PLN03212 78 RGGITSDEEDLILRLHRLLGN-RWSLIAGRIPGRTD-------NEIKNYWNTHLRKK 126 (249)
T ss_pred cCCCChHHHHHHHHHHHhccc-cHHHHHhhcCCCCH-------HHHHHHHHHHHhHH
Confidence 357888899999999999996 59999998877774 89999987655443
No 70
>PLN03091 hypothetical protein; Provisional
Probab=77.79 E-value=2.7 Score=47.33 Aligned_cols=49 Identities=16% Similarity=0.322 Sum_probs=43.1
Q ss_pred CcccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHHhhhh
Q 006378 11 KQAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYNDLKRRF 67 (647)
Q Consensus 11 ~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L~rRf 67 (647)
...|..-|+.+|...|..||. .|-.||..|.-|+. ..|+-||..|-+||
T Consensus 67 KgpWT~EED~lLLeL~k~~Gn-KWskIAk~LPGRTD-------nqIKNRWnslLKKk 115 (459)
T PLN03091 67 RGTFSQQEENLIIELHAVLGN-RWSQIAAQLPGRTD-------NEIKNLWNSCLKKK 115 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCc-chHHHHHhcCCCCH-------HHHHHHHHHHHHHH
Confidence 468999999999999999997 69999999877775 89999999877765
No 71
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=76.35 E-value=2.5 Score=43.28 Aligned_cols=44 Identities=20% Similarity=0.473 Sum_probs=37.8
Q ss_pred CcccchhHHHHHHHHHhhccCCChhHHHHHHh-hhcCCCCCCCHHHHHHHHH
Q 006378 11 KQAWGTKEELLLACAVHRYGTQNWISVATEVQ-KRSSKFQLLTPLSCQQKYN 61 (647)
Q Consensus 11 ~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~-~r~~~~~~~t~~~C~~k~~ 61 (647)
...|..=|+.+|..-|..||..+|.+||.-+- -|| --.||+|+.
T Consensus 9 kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~-------GKSCRlRW~ 53 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRC-------GKSCRLRWT 53 (238)
T ss_pred CCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCcc-------chHHHHHhh
Confidence 47788889999999999999999999998766 555 488999875
No 72
>smart00595 MADF subfamily of SANT domain.
Probab=73.26 E-value=3.5 Score=35.19 Aligned_cols=30 Identities=20% Similarity=0.627 Sum_probs=26.9
Q ss_pred ChhHHHHHHhhhcCCCCCCCHHHHHHHHHHHhhhhcCC
Q 006378 33 NWISVATEVQKRSSKFQLLTPLSCQQKYNDLKRRFSGN 70 (647)
Q Consensus 33 ~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L~rRfs~~ 70 (647)
.|..||.+|.. |+..|+.|+..|+.+|...
T Consensus 29 aW~~Ia~~l~~--------~~~~~~~kw~~LR~~y~~e 58 (89)
T smart00595 29 AWEEIAEELGL--------SVEECKKRWKNLRDRYRRE 58 (89)
T ss_pred HHHHHHHHHCc--------CHHHHHHHHHHHHHHHHHH
Confidence 79999999977 8899999999999999653
No 73
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=71.21 E-value=21 Score=35.90 Aligned_cols=46 Identities=22% Similarity=0.250 Sum_probs=31.2
Q ss_pred cccchhHHHHHHHHHhhccCCChhHHHH-HHhhhcCCCCCCCHHHHHHHH
Q 006378 12 QAWGTKEELLLACAVHRYGTQNWISVAT-EVQKRSSKFQLLTPLSCQQKY 60 (647)
Q Consensus 12 ~~WgT~EELlLa~AV~Rhg~~~Wdsva~-E~~~r~~~~~~~t~~~C~~k~ 60 (647)
..|..=+++||+..|+||+...=.-+++ |.-... -.-|+..|..+|
T Consensus 6 dawt~e~d~llae~vl~~i~eg~tql~afe~~g~~---L~rt~aac~fRw 52 (170)
T PRK13923 6 DAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDA---LKRTAAACGFRW 52 (170)
T ss_pred hhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHH---HhhhHHHHHhHH
Confidence 5799999999999999999765443332 100000 013779999999
No 74
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=69.19 E-value=6.1 Score=34.01 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=31.3
Q ss_pred ChhHHHHHHhhhcCCCCCCCHHHHHHHHHHHhhhhcCC
Q 006378 33 NWISVATEVQKRSSKFQLLTPLSCQQKYNDLKRRFSGN 70 (647)
Q Consensus 33 ~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L~rRfs~~ 70 (647)
.|+.|+.+|..++- ..+|...|+.||..|++.|..-
T Consensus 33 ~w~~i~~~~~~~~~--~~~t~~qlknk~~~lk~~y~~~ 68 (96)
T PF12776_consen 33 GWNNIAEEFNEKTG--LNYTKKQLKNKWKTLKKDYRIW 68 (96)
T ss_pred HHHHHHHHHHHHhC--CcccHHHHHHHHHHHHHHHHHH
Confidence 49999999999654 5689999999999999999653
No 75
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=64.22 E-value=8.4 Score=32.85 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=24.6
Q ss_pred HHHHHHHhcCCcCCcHHHHHHHHHHHHH
Q 006378 324 ETIRTRLEENWYSGSNSSFFHDLLLLFN 351 (647)
Q Consensus 324 ~TIrsKLesg~Y~S~~~EF~rDLlLmf~ 351 (647)
..|+..|.+|.|.|.+ |.++|.+.++.
T Consensus 12 ~~i~~~V~sG~Y~s~S-EVir~aLR~le 38 (69)
T TIGR02606 12 SFIRSQVQSGRYGSAS-EVVRAALRLLE 38 (69)
T ss_pred HHHHHHHHCCCCCCHH-HHHHHHHHHHH
Confidence 4689999999999999 99999999875
No 76
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=60.77 E-value=26 Score=29.11 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=36.5
Q ss_pred CcccchhHHHHHHHHHhhccCCCh---hHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 006378 11 KQAWGTKEELLLACAVHRYGTQNW---ISVATEVQKRSSKFQLLTPLSCQQKYN 61 (647)
Q Consensus 11 ~~~WgT~EELlLa~AV~Rhg~~~W---dsva~E~~~r~~~~~~~t~~~C~~k~~ 61 (647)
...|..=|..++..||..+|.++| ..|+..+.. ..||+..|+..++
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~-----~~lT~~qV~SH~Q 51 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVV-----DGLTRDQVASHLQ 51 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCC-----CCCCHHHHHHHHH
Confidence 467999999999999999999999 888765542 2458888886554
No 77
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=59.28 E-value=23 Score=33.43 Aligned_cols=55 Identities=27% Similarity=0.560 Sum_probs=40.1
Q ss_pred CCCCcccchhHHHHHHHHHhhccC---CChhHHHHHHhhhcCCCC------CCCHHHHHHHHHHH
Q 006378 8 FPEKQAWGTKEELLLACAVHRYGT---QNWISVATEVQKRSSKFQ------LLTPLSCQQKYNDL 63 (647)
Q Consensus 8 ~~~~~~WgT~EELlLa~AV~Rhg~---~~Wdsva~E~~~r~~~~~------~~t~~~C~~k~~~L 63 (647)
+..+-.|..-|+=+|.|.|.+||. +.|+.|-++++.--. .. +.||+....|-+-|
T Consensus 46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~-FrFDwf~kSRt~~el~rR~~tL 109 (118)
T PF09111_consen 46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPL-FRFDWFFKSRTPQELQRRCNTL 109 (118)
T ss_dssp TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CG-GCT-HHHHTS-HHHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCC-cccchhcccCCHHHHHHHHHHH
Confidence 445678888999999999999999 999999999986433 22 34888776666555
No 78
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=58.60 E-value=14 Score=43.69 Aligned_cols=57 Identities=25% Similarity=0.314 Sum_probs=49.2
Q ss_pred CcccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHHhhhhcCCC
Q 006378 11 KQAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYNDLKRRFSGND 71 (647)
Q Consensus 11 ~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L~rRfs~~~ 71 (647)
...|..-||--|..+|.-+|.+.|-.+|++|=.|+. ---..||.||-..+-|.+.+-
T Consensus 412 ~~rW~l~edeqL~~~V~~YG~g~WakcA~~Lp~~t~----~q~~rrR~R~~~~k~rl~~~~ 468 (939)
T KOG0049|consen 412 VERWTLVEDEQLLYAVKVYGKGNWAKCAMLLPKKTS----RQLRRRRLRLIAAKLRLAAGF 468 (939)
T ss_pred cCceeecchHHHHHHHHHHccchHHHHHHHccccch----hHHHHHHHHHHHHHHHHhcCC
Confidence 467988899999999999999999999999988875 223689999999999987764
No 79
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=55.94 E-value=19 Score=38.57 Aligned_cols=56 Identities=25% Similarity=0.466 Sum_probs=38.7
Q ss_pred cccchhHHHHHHHHH------hhcc---CCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHHhhhhcCC
Q 006378 12 QAWGTKEELLLACAV------HRYG---TQNWISVATEVQKRSSKFQLLTPLSCQQKYNDLKRRFSGN 70 (647)
Q Consensus 12 ~~WgT~EELlLa~AV------~Rhg---~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L~rRfs~~ 70 (647)
..|.+=|=|+|.-|- ++.| ...|.-||..++-.- ..-|+.-|+.||+.|.+||-..
T Consensus 55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g---~~rs~~qck~K~~nl~k~Yk~~ 119 (345)
T KOG4282|consen 55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELG---YPRSPKQCKAKIENLKKKYKKE 119 (345)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhC---CCCCHHHHHHHHHHHHHHHHHH
Confidence 567666666665543 3333 467999998333221 3469999999999999999665
No 80
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=51.34 E-value=9.8 Score=46.13 Aligned_cols=86 Identities=13% Similarity=0.086 Sum_probs=65.2
Q ss_pred ccchhHHHHHHHHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCc--------------C---------
Q 006378 280 AESRPLVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWY--------------S--------- 336 (647)
Q Consensus 280 ~~sq~L~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y--------------~--------- 336 (647)
++.--|++||.+| --++|.+..|.|-.+..-|.+|+|++..|..-.| -
T Consensus 74 I~kdhll~i~kql---------v~~~d~~~pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~~~~~s~~~~~h~~~~~~~~ 144 (1113)
T KOG0644|consen 74 IAKDHLLQILKQL---------VPMLDKPIPPRYCTIARVPTLLGTGRQSLLRRAKDIRHTVWKGSAFRWPHMHADQVRG 144 (1113)
T ss_pred cchHHHHHHHHHh---------ccCcCCCCCcceeeeecccchhcchhHHHHhhhhhcccccccccccccccccCccccc
Confidence 4445577777766 3567778889999999999999999999988665 1
Q ss_pred -CcH---H--HHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHH
Q 006378 337 -GSN---S--SFFHDLLLLFNNVIVFFDKNSSESAAAVELRQIVL 375 (647)
Q Consensus 337 -S~~---~--EF~rDLlLmf~NA~vYN~~~S~~~kaA~eLrklv~ 375 (647)
+.. . +..+-..+|-.||.+|+.++| +++-+..+++|.-
T Consensus 145 ~sl~s~~~~~~~h~~a~~i~~at~~~akPgt-mvqkmk~ikrLlg 188 (1113)
T KOG0644|consen 145 VSLRSIGGGFEIHHRAPSIGCATFSIAKPGT-MVQKMKNIKRLLG 188 (1113)
T ss_pred ceeccCCcchhhhhcCcccccceeeecCcHH-HHHHHHHHHHHHh
Confidence 222 0 255667789999999999999 7777776666544
No 81
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=51.23 E-value=15 Score=32.28 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=23.1
Q ss_pred HHHHHHHhcCCcCCcHHHHHHHHHHHHH
Q 006378 324 ETIRTRLEENWYSGSNSSFFHDLLLLFN 351 (647)
Q Consensus 324 ~TIrsKLesg~Y~S~~~EF~rDLlLmf~ 351 (647)
.-|+.+|.+|.|.|.+ |+++|.+.++.
T Consensus 15 ~~i~~~V~sG~Y~s~S-EvvR~aLRlle 41 (80)
T PF03693_consen 15 AFIEEQVASGRYSSAS-EVVREALRLLE 41 (80)
T ss_dssp HHHHHHHCTTS-SSHH-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHH-HHHHHHHHHHH
Confidence 4589999999999999 99999888774
No 82
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=47.73 E-value=39 Score=28.35 Aligned_cols=52 Identities=17% Similarity=0.305 Sum_probs=41.9
Q ss_pred ccchhHHHHHHHHHhhc-----c-----------CCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHHhhh
Q 006378 13 AWGTKEELLLACAVHRY-----G-----------TQNWISVATEVQKRSSKFQLLTPLSCQQKYNDLKRR 66 (647)
Q Consensus 13 ~WgT~EELlLa~AV~Rh-----g-----------~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L~rR 66 (647)
.|..-|..+|+.-|..| | ...|..|+.+|-+-.+ ...|+..|+.+|.+|+.+
T Consensus 4 ~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~--~~Rs~~~lkkkW~nlk~~ 71 (78)
T PF13873_consen 4 NFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGP--GKRSWKQLKKKWKNLKSK 71 (78)
T ss_pred CCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHHH
Confidence 46666778888888777 3 3469999999999776 377999999999999865
No 83
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=40.07 E-value=29 Score=28.59 Aligned_cols=33 Identities=21% Similarity=0.663 Sum_probs=26.1
Q ss_pred CChhHHHHHHhhhcCCCCCCCHHHHHHHHHHHhhhhcCC
Q 006378 32 QNWISVATEVQKRSSKFQLLTPLSCQQKYNDLKRRFSGN 70 (647)
Q Consensus 32 ~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L~rRfs~~ 70 (647)
..|..||.+|... +++..|+.++..|+.+|.-.
T Consensus 27 ~aw~~Ia~~l~~~------~~~~~~~~~w~~Lr~~y~~~ 59 (85)
T PF10545_consen 27 EAWQEIARELGKE------FSVDDCKKRWKNLRDRYRRE 59 (85)
T ss_pred HHHHHHHHHHccc------hhHHHHHHHHHHHHHHHHHH
Confidence 4699999999543 45788999999999888543
No 84
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=37.39 E-value=30 Score=33.97 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=16.8
Q ss_pred cchHHHHHHhHHHHHHHHH
Q 006378 84 IPWLDQLKKLRVAELKREL 102 (647)
Q Consensus 84 ~~w~eeLRklRvaeLrrev 102 (647)
..-|+++|++||+||+.++
T Consensus 37 e~~l~~~R~~R~~el~~~~ 55 (175)
T cd02987 37 EEFLQQYREQRMQEMHAKL 55 (175)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3579999999999999984
No 85
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=37.38 E-value=38 Score=28.40 Aligned_cols=31 Identities=32% Similarity=0.429 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhhccchhhHHHHHHHHHHHhc
Q 006378 94 RVAELKRELQLFDISIVSLQLKVERLIEERE 124 (647)
Q Consensus 94 RvaeLrreve~~d~sI~sLq~kvk~L~~er~ 124 (647)
||.||-.+|.+.+.+|++|+...+.|.++=+
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve 31 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVE 31 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999987643
No 86
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=37.19 E-value=35 Score=39.67 Aligned_cols=45 Identities=24% Similarity=0.686 Sum_probs=38.9
Q ss_pred CcccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHH
Q 006378 11 KQAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYND 62 (647)
Q Consensus 11 ~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~ 62 (647)
+..|-.-|+-+|-.||.-+|+.-|.-|+.-+..- |+.-|+++|..
T Consensus 7 ggvwrntEdeilkaav~kyg~nqws~i~sll~~k-------t~rqC~~rw~e 51 (617)
T KOG0050|consen 7 GGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRK-------TARQCKARWEE 51 (617)
T ss_pred cceecccHHHHHHHHHHHcchHHHHHHHHHHhhc-------chhHHHHHHHH
Confidence 5679999999999999999999999999766544 46999999974
No 87
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=34.90 E-value=5.7 Score=46.59 Aligned_cols=70 Identities=10% Similarity=0.025 Sum_probs=64.0
Q ss_pred CCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHH
Q 006378 305 DATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNSSESAAAVELRQIVL 375 (647)
Q Consensus 305 Vd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S~~~kaA~eLrklv~ 375 (647)
++-...|.|+.++|-||-++...+++..+.|.... .|..|+.++|-|+.+|+....-++..+..|.+...
T Consensus 220 ~dg~k~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~-~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~dv 289 (629)
T KOG1827|consen 220 PDGEKWPQGCWIYRPEETVHRADRKFYKQEVFKTS-LYRDDLVQRLLGKCYVMKPTEYISGDPENLSEEDV 289 (629)
T ss_pred cccccccceeEeeCCccCccccccchhcccceecc-cccccHHHHhhcceEEeehhHhhhcCcccccccce
Confidence 34468999999999999999999999999999999 99999999999999999999999999998876443
No 88
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=30.69 E-value=17 Score=27.81 Aligned_cols=22 Identities=45% Similarity=0.443 Sum_probs=14.2
Q ss_pred HHHhHHHHHHHHHhhhccchhh
Q 006378 90 LKKLRVAELKRELQLFDISIVS 111 (647)
Q Consensus 90 LRklRvaeLrreve~~d~sI~s 111 (647)
+.+|+|++||+-|..+++.+-|
T Consensus 1 p~sltV~~Lk~iL~~~~I~~ps 22 (35)
T PF12949_consen 1 PKSLTVAQLKRILDEHGIEFPS 22 (35)
T ss_dssp STT--SHHHHHHHHHHT---SS
T ss_pred CCcCcHHHHHHHHHHcCCCCCC
Confidence 3579999999999998887654
No 89
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=29.79 E-value=64 Score=27.77 Aligned_cols=34 Identities=44% Similarity=0.449 Sum_probs=27.7
Q ss_pred HHHHHHhHHHHHHHHHhhhccchhhHHHHHHHHHHHhccCc
Q 006378 87 LDQLKKLRVAELKRELQLFDISIVSLQLKVERLIEEREGKE 127 (647)
Q Consensus 87 ~eeLRklRvaeLrreve~~d~sI~sLq~kvk~L~~er~~~~ 127 (647)
-|+|-=|-|+||- .-|+-||..|+||++|+.+..
T Consensus 19 ~d~LsllsV~El~-------eRIalLq~EIeRlkAe~~kK~ 52 (65)
T COG5509 19 NDALSLLSVAELE-------ERIALLQAEIERLKAELAKKK 52 (65)
T ss_pred hhHHHHhhHHHHH-------HHHHHHHHHHHHHHHHHHhhh
Confidence 3457788899884 459999999999999997654
No 90
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=23.81 E-value=88 Score=32.99 Aligned_cols=31 Identities=39% Similarity=0.441 Sum_probs=29.0
Q ss_pred HhHHHHHHHHHhhhccchhhHHHHHHHHHHH
Q 006378 92 KLRVAELKRELQLFDISIVSLQLKVERLIEE 122 (647)
Q Consensus 92 klRvaeLrreve~~d~sI~sLq~kvk~L~~e 122 (647)
+.|++||-.||-+.-.-|.+|+..|+.|+++
T Consensus 92 R~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 92 RQRNAELEEELRKQQQTISSLRREVESLRAD 122 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999987
No 91
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=23.53 E-value=2.4e+02 Score=27.42 Aligned_cols=62 Identities=23% Similarity=0.296 Sum_probs=44.1
Q ss_pred HHHHHhhhhcCCCccccccCCCCCccchHHHHHHh------HHHHHHHHHhhhccchhhHHHHHHHHHHH
Q 006378 59 KYNDLKRRFSGNDAVSISADNSDDAIPWLDQLKKL------RVAELKRELQLFDISIVSLQLKVERLIEE 122 (647)
Q Consensus 59 k~~~L~rRfs~~~~~~~~~~~~~~~~~w~eeLRkl------RvaeLrreve~~d~sI~sLq~kvk~L~~e 122 (647)
+-.+|+++|......+. -......+-+.|+|.+ -|-+|..||..-|.-|..|..+|..|...
T Consensus 56 ~Ls~LK~~y~~~~~~~~--~~~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~ 123 (131)
T PF04859_consen 56 RLSELKRRYRKKQSDPS--PQVARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRA 123 (131)
T ss_pred HHHHHHHHHHcCCCCCC--ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999987642111 0011124566777765 58899999999999999999999888764
No 92
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=22.07 E-value=1.5e+02 Score=23.78 Aligned_cols=35 Identities=31% Similarity=0.345 Sum_probs=29.1
Q ss_pred HHHHHhHHHHHHHHHhhhccchhhHHHHHHHHHHH
Q 006378 88 DQLKKLRVAELKRELQLFDISIVSLQLKVERLIEE 122 (647)
Q Consensus 88 eeLRklRvaeLrreve~~d~sI~sLq~kvk~L~~e 122 (647)
-+=++.++.+|..+|......+-.|+..|..|+.|
T Consensus 20 R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 20 RQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34467888889999999888889999999999865
No 93
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=21.78 E-value=1e+02 Score=31.06 Aligned_cols=39 Identities=23% Similarity=0.381 Sum_probs=34.1
Q ss_pred HHHHHhHHHHHHHHHhhhccchhhHHHHHHHHHHHhccC
Q 006378 88 DQLKKLRVAELKRELQLFDISIVSLQLKVERLIEEREGK 126 (647)
Q Consensus 88 eeLRklRvaeLrreve~~d~sI~sLq~kvk~L~~er~~~ 126 (647)
-.-|+.++.+|..+++.....|..|+.+|+.++.+|..+
T Consensus 64 ~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~ 102 (188)
T PF03962_consen 64 KQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES 102 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 345677899999999999999999999999998888655
No 94
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=21.44 E-value=1.1e+02 Score=33.30 Aligned_cols=20 Identities=30% Similarity=0.242 Sum_probs=18.1
Q ss_pred hccchhhHHHHHHHHHHHhc
Q 006378 105 FDISIVSLQLKVERLIEERE 124 (647)
Q Consensus 105 ~d~sI~sLq~kvk~L~~er~ 124 (647)
+|--|+.|+.|+++|++||.
T Consensus 114 ke~l~seleeKkrkieeeR~ 133 (291)
T KOG4466|consen 114 KENLISELEEKKRKIEEERL 133 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 56789999999999999986
No 95
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=20.97 E-value=93 Score=23.17 Aligned_cols=31 Identities=45% Similarity=0.441 Sum_probs=21.3
Q ss_pred HHHhHHHHHHHHHhhhccchh-hHHHHHHHHH
Q 006378 90 LKKLRVAELKRELQLFDISIV-SLQLKVERLI 120 (647)
Q Consensus 90 LRklRvaeLrreve~~d~sI~-sLq~kvk~L~ 120 (647)
|-++.|+|||.++....+++. .=+.=|+||.
T Consensus 1 l~~l~v~eLk~~l~~~gL~~~G~K~~Li~Rl~ 32 (35)
T PF02037_consen 1 LSKLTVAELKEELKERGLSTSGKKAELIERLK 32 (35)
T ss_dssp TTTSHHHHHHHHHHHTTS-STSSHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 346899999999999998874 3333445554
No 96
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=20.76 E-value=72 Score=31.98 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=16.1
Q ss_pred chHHHHHHhHHHHHHHHH
Q 006378 85 PWLDQLKKLRVAELKREL 102 (647)
Q Consensus 85 ~w~eeLRklRvaeLrrev 102 (647)
.-|+++|++||+||+++-
T Consensus 59 ~~Le~yR~kRl~el~~~~ 76 (192)
T cd02988 59 RFLEEYRRKRLAEMKALA 76 (192)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 489999999999999863
No 97
>PF08074 CHDCT2: CHDCT2 (NUC038) domain; InterPro: IPR012957 The CHDCT2 C-terminal domain is found in PHD/RING fingers and chromo domain-associated CHD-like helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.39 E-value=71 Score=32.27 Aligned_cols=56 Identities=18% Similarity=0.312 Sum_probs=35.8
Q ss_pred CcccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHH-----HHHHHHHHhhhh
Q 006378 11 KQAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLS-----CQQKYNDLKRRF 67 (647)
Q Consensus 11 ~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~-----C~~k~~~L~rRf 67 (647)
.++|.---+..|..+|.-||.+-|..|..--+--.. --+|..+. |..|-.=|.|||
T Consensus 3 ~~iw~r~hdywll~gi~~hgy~rwqdi~nd~~f~Ii-NEPFk~e~~kgnfle~KNkFLaRRf 63 (173)
T PF08074_consen 3 YEIWHRRHDYWLLAGIVKHGYGRWQDIQNDPRFAII-NEPFKTESQKGNFLEMKNKFLARRF 63 (173)
T ss_pred hhhhhhhhhHHHHhHHhhccchhHHHHhcCCceeee-cccccccccccchHHHHHHHHHHHH
Confidence 468988888888888889999999966532211111 12464444 555555566666
Done!