Query 006378
Match_columns 647
No_of_seqs 152 out of 669
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 23:26:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006378.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006378hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g0l_A Hwalp4, bromodomain adj 99.9 6.7E-27 2.3E-31 209.0 12.4 101 282-383 15-115 (117)
2 3d7c_A General control of amin 99.9 8E-27 2.7E-31 207.3 12.1 99 282-381 9-107 (112)
3 3nxb_A CAT eye syndrome critic 99.9 1E-26 3.5E-31 207.5 11.7 98 282-380 18-115 (116)
4 1e6i_A Transcriptional activat 99.9 1.8E-26 6E-31 208.3 12.1 99 282-381 15-113 (121)
5 2d9e_A Peregrin; four-helix bu 99.9 2.2E-26 7.5E-31 207.9 11.8 100 282-382 9-108 (121)
6 2dat_A Possible global transcr 99.9 3.6E-26 1.2E-30 206.6 11.5 101 281-382 14-120 (123)
7 3mb4_A Protein polybromo-1; PB 99.9 4E-26 1.4E-30 206.3 11.5 102 280-382 15-122 (124)
8 2i7k_A Bromodomain-containing 99.9 4.4E-26 1.5E-30 205.3 11.5 101 282-383 10-110 (117)
9 3mb3_A PH-interacting protein; 99.9 7.1E-26 2.4E-30 207.1 12.1 100 282-382 23-123 (135)
10 2oss_A HUNK1 protein, bromodom 99.9 5.4E-26 1.9E-30 206.9 11.3 97 285-382 26-124 (127)
11 3q2e_A Bromodomain and WD repe 99.9 8.2E-26 2.8E-30 204.0 12.2 101 282-383 12-113 (123)
12 3iu5_A Protein polybromo-1; PB 99.9 5.2E-26 1.8E-30 203.2 10.7 102 282-384 7-114 (116)
13 3p1f_A CREB-binding protein; s 99.9 8E-26 2.7E-30 202.5 11.0 100 282-382 13-115 (119)
14 2yyn_A Transcription intermedi 99.9 1.4E-25 4.9E-30 206.0 12.7 103 281-385 21-125 (135)
15 4alg_A Bromodomain-containing 99.9 1E-25 3.4E-30 211.5 11.8 97 285-382 37-135 (154)
16 2grc_A Probable global transcr 99.9 7E-26 2.4E-30 206.4 10.3 103 281-384 12-121 (129)
17 3hme_A Bromodomain-containing 99.9 1.1E-25 3.8E-30 203.6 11.4 98 282-380 15-112 (123)
18 3rcw_A Bromodomain-containing 99.9 1.7E-25 5.9E-30 204.6 12.5 100 282-382 15-114 (135)
19 2ouo_A HUNK1 protein, bromodom 99.9 1E-25 3.6E-30 205.7 9.9 99 282-381 24-127 (130)
20 3ljw_A Protein polybromo-1; al 99.9 3.2E-25 1.1E-29 199.4 11.5 100 282-382 10-115 (120)
21 3mqm_A Probable histone-lysine 99.9 2.6E-25 8.8E-30 201.3 10.8 100 282-382 11-116 (126)
22 3k2j_A Protein polybromo-1; PB 99.9 4.4E-25 1.5E-29 202.0 11.6 100 282-382 19-124 (130)
23 3jvl_A Bromodomain-containing 99.9 1.5E-25 5.3E-30 201.0 8.4 100 282-382 11-115 (120)
24 3fkm_X Signaling protein; brom 99.9 5.3E-25 1.8E-29 208.8 11.1 100 282-382 23-124 (166)
25 2ri7_A Nucleosome-remodeling f 99.9 4.2E-25 1.4E-29 208.1 10.2 99 281-380 73-171 (174)
26 3uv4_A Second bromodomain of h 99.9 1.5E-24 5.2E-29 204.6 10.9 99 283-382 28-131 (158)
27 3dai_A ATPase family AAA domai 99.9 3.5E-24 1.2E-28 195.3 12.1 99 283-382 13-115 (130)
28 3tlp_A Protein polybromo-1; PB 99.9 3.9E-24 1.3E-28 198.8 11.9 104 282-386 26-136 (150)
29 3o36_A Transcription intermedi 99.9 8.1E-24 2.8E-28 201.8 11.4 100 281-382 82-183 (184)
30 2dkw_A Hypothetical protein KI 99.9 8.6E-23 2.9E-27 187.4 11.5 96 283-384 15-114 (131)
31 3uv5_A Transcription initiatio 99.9 8.6E-23 2.9E-27 205.3 11.9 101 281-382 15-115 (265)
32 3u5n_A E3 ubiquitin-protein li 99.9 8.3E-23 2.8E-27 198.5 11.4 101 281-383 82-202 (207)
33 3uv5_A Transcription initiatio 99.9 2.8E-22 9.6E-27 201.5 11.3 90 292-382 149-238 (265)
34 2ro1_A Transcription intermedi 99.9 1.4E-22 4.9E-27 195.6 8.3 97 282-384 78-179 (189)
35 3aad_A Transcription initiatio 99.9 1.6E-22 5.6E-27 206.3 7.7 99 282-381 49-147 (292)
36 3aad_A Transcription initiatio 99.9 1.1E-21 3.7E-26 200.3 11.2 91 291-382 181-271 (292)
37 2r10_A Chromatin structure-rem 99.8 1.4E-21 4.9E-26 204.7 9.9 88 294-382 227-314 (361)
38 2r0y_A Chromatin structure-rem 99.8 1.3E-21 4.5E-26 201.8 9.4 88 294-382 177-264 (311)
39 2r10_A Chromatin structure-rem 99.8 7.2E-20 2.5E-24 191.9 8.3 95 284-381 82-179 (361)
40 2r0y_A Chromatin structure-rem 99.8 2.3E-19 8E-24 185.0 8.3 94 285-381 33-129 (311)
41 3iu6_A Protein polybromo-1; PB 99.7 9.6E-17 3.3E-21 150.9 10.8 98 282-384 9-112 (147)
42 3lqh_A Histone-lysine N-methyl 99.5 2.4E-14 8.1E-19 138.6 8.2 89 285-385 80-168 (183)
43 2elk_A SPCC24B10.08C protein; 97.7 5.6E-05 1.9E-09 60.2 5.5 46 11-63 9-55 (58)
44 1x41_A Transcriptional adaptor 97.6 0.0001 3.5E-09 58.9 5.8 48 9-63 6-53 (60)
45 2yus_A SWI/SNF-related matrix- 97.5 9.2E-05 3.2E-09 62.9 4.6 53 3-63 10-62 (79)
46 1w0t_A Telomeric repeat bindin 97.4 9.2E-05 3.1E-09 57.6 4.0 49 12-65 3-51 (53)
47 3sjm_A Telomeric repeat-bindin 97.3 0.0002 6.7E-09 58.5 4.2 54 7-65 7-60 (64)
48 1guu_A C-MYB, MYB proto-oncoge 97.3 0.00019 6.6E-09 55.3 3.7 45 12-63 4-48 (52)
49 2d9a_A B-MYB, MYB-related prot 97.2 0.00029 1E-08 55.9 4.4 49 8-63 5-53 (60)
50 1ity_A TRF1; helix-turn-helix, 97.0 0.0007 2.4E-08 55.3 5.2 54 9-67 8-61 (69)
51 2cu7_A KIAA1915 protein; nucle 97.0 0.0011 3.8E-08 54.6 6.0 57 5-69 3-59 (72)
52 1gvd_A MYB proto-oncogene prot 97.0 0.00038 1.3E-08 53.8 2.8 46 11-63 3-48 (52)
53 2dim_A Cell division cycle 5-l 96.9 0.00082 2.8E-08 54.9 4.8 47 10-63 8-54 (70)
54 2yum_A ZZZ3 protein, zinc fing 96.6 0.003 1E-07 52.1 5.7 51 9-66 6-62 (75)
55 2llk_A Cyclin-D-binding MYB-li 96.5 0.0024 8.4E-08 53.6 4.9 49 11-68 23-71 (73)
56 2din_A Cell division cycle 5-l 96.3 0.0058 2E-07 49.3 5.6 48 11-67 9-56 (66)
57 3osg_A MYB21; transcription-DN 96.3 0.003 1E-07 56.9 4.3 55 1-63 1-55 (126)
58 2k9n_A MYB24; R2R3 domain, DNA 96.2 0.0036 1.2E-07 54.8 4.4 45 12-63 2-46 (107)
59 2ckx_A NGTRF1, telomere bindin 96.2 0.0037 1.3E-07 53.7 4.2 53 13-68 2-54 (83)
60 2ltp_A Nuclear receptor corepr 95.2 0.00084 2.9E-08 57.8 0.0 53 9-69 14-66 (89)
61 2k9n_A MYB24; R2R3 domain, DNA 96.0 0.0085 2.9E-07 52.5 5.5 50 11-68 53-102 (107)
62 2cqr_A RSGI RUH-043, DNAJ homo 95.9 0.0024 8.3E-08 53.6 1.5 52 10-68 17-71 (73)
63 1gv2_A C-MYB, MYB proto-oncoge 95.8 0.0041 1.4E-07 53.9 2.8 46 11-63 4-49 (105)
64 3zqc_A MYB3; transcription-DNA 95.5 0.0054 1.9E-07 55.5 2.4 46 11-63 2-47 (131)
65 3osg_A MYB21; transcription-DN 95.5 0.0098 3.3E-07 53.6 4.1 52 11-70 62-113 (126)
66 1h8a_C AMV V-MYB, MYB transfor 95.3 0.015 5E-07 52.3 4.4 46 11-63 27-72 (128)
67 2roh_A RTBP1, telomere binding 95.3 0.016 5.4E-07 53.2 4.6 57 9-68 29-85 (122)
68 2juh_A Telomere binding protei 95.2 0.02 7E-07 52.4 5.0 58 8-68 14-71 (121)
69 1gv2_A C-MYB, MYB proto-oncoge 95.2 0.013 4.3E-07 50.8 3.5 48 11-66 56-103 (105)
70 2aje_A Telomere repeat-binding 94.9 0.013 4.4E-07 52.5 2.9 59 9-70 11-69 (105)
71 2cjj_A Radialis; plant develop 94.8 0.021 7.2E-07 50.0 4.0 51 10-67 7-60 (93)
72 2iw5_B Protein corest, REST co 94.7 0.032 1.1E-06 56.2 5.5 57 3-67 125-181 (235)
73 1h89_C C-MYB, MYB proto-oncoge 94.1 0.012 4E-07 54.7 0.8 46 10-62 5-50 (159)
74 1wgx_A KIAA1903 protein; MYB D 94.1 0.042 1.4E-06 46.4 4.0 54 10-70 7-63 (73)
75 1h89_C C-MYB, MYB proto-oncoge 93.9 0.041 1.4E-06 51.0 4.0 47 10-63 57-103 (159)
76 1h8a_C AMV V-MYB, MYB transfor 93.8 0.027 9.1E-07 50.6 2.6 48 11-66 79-126 (128)
77 2cqq_A RSGI RUH-037, DNAJ homo 93.3 0.12 4.1E-06 43.2 5.4 51 9-67 6-59 (72)
78 3zqc_A MYB3; transcription-DNA 93.1 0.051 1.8E-06 49.1 3.2 51 12-70 55-106 (131)
79 2eqr_A N-COR1, N-COR, nuclear 93.0 0.12 4.1E-06 41.4 4.9 50 8-65 9-58 (61)
80 2ebi_A DNA binding protein GT- 92.8 0.1 3.4E-06 44.0 4.4 58 11-71 4-70 (86)
81 2xag_B REST corepressor 1; ami 88.7 0.41 1.4E-05 52.7 5.4 56 4-67 373-428 (482)
82 1x58_A Hypothetical protein 49 78.3 6.3 0.00022 32.4 6.9 58 7-69 4-61 (62)
83 4b4c_A Chromodomain-helicase-D 78.0 1.9 6.5E-05 41.2 4.4 30 11-40 134-163 (211)
84 1ign_A Protein (RAP1); RAP1,ye 73.9 1.2 4.3E-05 45.1 2.0 49 11-66 8-62 (246)
85 2xb0_X Chromo domain-containin 63.2 3.9 0.00013 41.9 3.1 29 12-40 169-197 (270)
86 2yqk_A Arginine-glutamic acid 60.3 7.3 0.00025 31.3 3.5 47 11-65 9-56 (63)
87 1ofc_X ISWI protein; nuclear p 46.2 24 0.00083 36.7 5.6 35 10-44 211-248 (304)
88 2y9y_A Imitation switch protei 43.3 40 0.0014 36.2 6.8 35 10-44 227-264 (374)
89 1ofc_X ISWI protein; nuclear p 41.3 12 0.00042 38.9 2.6 49 14-69 113-161 (304)
90 2crg_A Metastasis associated p 39.9 32 0.0011 28.2 4.3 49 9-65 6-55 (70)
91 1fex_A TRF2-interacting telome 36.7 15 0.00052 29.3 1.8 44 13-62 4-55 (59)
92 3si5_X Protein CASC5; BUBR1-bl 35.8 15 0.0005 25.1 1.3 18 532-549 6-23 (24)
93 3kxe_C Antitoxin protein PARD- 35.0 31 0.0011 29.7 3.7 30 323-353 15-44 (88)
94 2do1_A Nuclear protein HCC-1; 35.0 18 0.00061 28.9 2.0 34 90-123 10-44 (55)
95 1zrj_A E1B-55KDA-associated pr 34.7 28 0.00095 27.3 3.0 35 90-124 10-45 (50)
96 1zxa_A CGMP-dependent protein 31.1 46 0.0016 27.7 3.9 32 89-120 21-52 (67)
97 2kvu_A MKL/myocardin-like prot 27.7 27 0.00093 29.7 2.0 37 89-125 25-62 (75)
98 1yyb_A Programmed cell death p 26.7 38 0.0013 23.4 2.2 17 85-101 5-21 (27)
99 1h1j_S THO1 protein; SAP domai 22.0 52 0.0018 25.8 2.5 36 89-124 4-40 (51)
No 1
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.94 E-value=6.7e-27 Score=208.97 Aligned_cols=101 Identities=22% Similarity=0.275 Sum_probs=98.1
Q ss_pred chhHHHHHHHHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCC
Q 006378 282 SRPLVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNS 361 (647)
Q Consensus 282 sq~L~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S 361 (647)
-+.|..||+.|+.|+.+|+|..||+...+||||++|++||||+||+.||++|.|.++. +|..||.|||.||+.||+++|
T Consensus 15 ~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~~yN~~~s 93 (117)
T 3g0l_A 15 LALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLE-TFALDVRLVFDNCETFNEDDS 93 (117)
T ss_dssp HHHHHHHHHHHHTSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHH-HHHHHHHHHHHHHHHHSCSSS
T ss_pred HHHHHHHHHHHHhCCCchhhcCcCChhhcCChHHHcCCCCCHHHHHHHHhCCCCCCHH-HHHHHHHHHHHHHHHHCCCCC
Confidence 4679999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC
Q 006378 362 SESAAAVELRQIVLKAMTRNTF 383 (647)
Q Consensus 362 ~~~kaA~eLrklv~K~m~k~l~ 383 (647)
.+|.+|..|+++|.+.|.+.++
T Consensus 94 ~~~~~A~~L~~~f~~~~~~~~~ 115 (117)
T 3g0l_A 94 DIGRAGHNMRKYFEKKWTDTFK 115 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999998874
No 2
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.94 E-value=8e-27 Score=207.29 Aligned_cols=99 Identities=23% Similarity=0.310 Sum_probs=96.0
Q ss_pred chhHHHHHHHHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCC
Q 006378 282 SRPLVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNS 361 (647)
Q Consensus 282 sq~L~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S 361 (647)
...|..||+.|+.|+.+++|..||+..++|+||+||++||||+||+.||++|.|.++. +|.+||.|||.||+.||+++|
T Consensus 9 ~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-~f~~Dv~li~~Na~~yN~~~s 87 (112)
T 3d7c_A 9 YTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRK-LFVADLQRVIANCREYNPPDS 87 (112)
T ss_dssp HHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHH-HHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHcCCCchhhcCCCCcccccCHHHHccCCcCHHHHHHHHcCCCCcCHH-HHHHHHHHHHHHHHHHCCCCC
Confidence 3679999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 006378 362 SESAAAVELRQIVLKAMTRN 381 (647)
Q Consensus 362 ~~~kaA~eLrklv~K~m~k~ 381 (647)
.+|.+|..|+++|.+.|.+.
T Consensus 88 ~~~~~A~~L~~~f~~~~~~~ 107 (112)
T 3d7c_A 88 EYCRCASALEKFFYFKLKEG 107 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999864
No 3
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.94 E-value=1e-26 Score=207.49 Aligned_cols=98 Identities=17% Similarity=0.346 Sum_probs=95.7
Q ss_pred chhHHHHHHHHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCC
Q 006378 282 SRPLVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNS 361 (647)
Q Consensus 282 sq~L~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S 361 (647)
.+.|..||+.|+.|+.+++|..||+...+||||+||++||||+||+.||++|.|.++. +|..||.|||.||+.||+++|
T Consensus 18 ~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~~yN~~~s 96 (116)
T 3nxb_A 18 FTAMYKVLDVVKAHKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKE-EFVNDMKTMFRNCRKYNGESS 96 (116)
T ss_dssp HHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhCCCcHhhcCcCChhhccChHHHcCCCCCHHHHHHHHcCCCCCCHH-HHHHHHHHHHHHHHHHCCCCC
Confidence 4789999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 006378 362 SESAAAVELRQIVLKAMTR 380 (647)
Q Consensus 362 ~~~kaA~eLrklv~K~m~k 380 (647)
.+|.+|..|+++|.+.|.+
T Consensus 97 ~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 97 EYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999976
No 4
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.94 E-value=1.8e-26 Score=208.32 Aligned_cols=99 Identities=23% Similarity=0.338 Sum_probs=96.2
Q ss_pred chhHHHHHHHHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCC
Q 006378 282 SRPLVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNS 361 (647)
Q Consensus 282 sq~L~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S 361 (647)
...|..||+.|+.|+.+|+|..||+..++|+||+||++||||+||+.||++|.|.++. +|..||.|||+||+.||+++|
T Consensus 15 ~~~~~~il~~l~~~~~a~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~li~~Na~~yN~~~s 93 (121)
T 1e6i_A 15 DAAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKME-DFIYDARLVFNNCRMYNGENT 93 (121)
T ss_dssp HHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHcCCCchhhCCCCChhhCcCHHHHcCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCCC
Confidence 4689999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 006378 362 SESAAAVELRQIVLKAMTRN 381 (647)
Q Consensus 362 ~~~kaA~eLrklv~K~m~k~ 381 (647)
.+|.+|..|+++|.+.|.++
T Consensus 94 ~i~~~A~~L~~~f~~~~~~~ 113 (121)
T 1e6i_A 94 SYYKYANRLEKFFNNKVKEI 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999764
No 5
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.93 E-value=2.2e-26 Score=207.92 Aligned_cols=100 Identities=23% Similarity=0.313 Sum_probs=95.7
Q ss_pred chhHHHHHHHHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCC
Q 006378 282 SRPLVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNS 361 (647)
Q Consensus 282 sq~L~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S 361 (647)
...|..||+.|+.|+.+++|..||+..++|+||+||++||||+||+.||++|.|.++. +|..||.|||+||++||+++|
T Consensus 9 ~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-ef~~D~~li~~Na~~yN~~~s 87 (121)
T 2d9e_A 9 LILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFD-DFEEDFNLIVSNCLKYNAKDT 87 (121)
T ss_dssp HHHHHHHHHHHHHHCSSCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHH-HHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHcCCccHhhCCcCCccccCCHHHHcCCCcCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCCC
Confidence 3679999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 006378 362 SESAAAVELRQIVLKAMTRNT 382 (647)
Q Consensus 362 ~~~kaA~eLrklv~K~m~k~l 382 (647)
.+|.+|..|+++|.+.|.+..
T Consensus 88 ~~~~~A~~L~~~~~~~l~~~~ 108 (121)
T 2d9e_A 88 IFYRAAVRLREQGGAVLRQAR 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998887643
No 6
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.93 E-value=3.6e-26 Score=206.59 Aligned_cols=101 Identities=21% Similarity=0.366 Sum_probs=96.1
Q ss_pred cchhHHHHHHHHHhCc------cCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhh
Q 006378 281 ESRPLVECIEIIRSHK------FGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVI 354 (647)
Q Consensus 281 ~sq~L~~ILd~L~shk------~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~ 354 (647)
-.+.|..||+.|+.|+ .+|+|..||+..++||||+||++||||.||++||++|.|.++. +|.+||.|||+||+
T Consensus 14 l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~li~~Na~ 92 (123)
T 2dat_A 14 LTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLG-DLEKDVMLLCHNAQ 92 (123)
T ss_dssp HHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHHHHHHHTTTCCCSHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhCCCCCCHH-HHHHHHHHHHHHHH
Confidence 3578999999999987 7999999999999999999999999999999999999999999 99999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHhhc
Q 006378 355 VFFDKNSSESAAAVELRQIVLKAMTRNT 382 (647)
Q Consensus 355 vYN~~~S~~~kaA~eLrklv~K~m~k~l 382 (647)
.||+++|.+|.+|..|+++|.+.|++..
T Consensus 93 ~yN~~~s~i~~~A~~L~~~f~~~~~~~p 120 (123)
T 2dat_A 93 TFNLEGSQIYEDSIVLQSVFKSARQSGP 120 (123)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999998643
No 7
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.93 E-value=4e-26 Score=206.28 Aligned_cols=102 Identities=25% Similarity=0.443 Sum_probs=97.0
Q ss_pred ccchhHHHHHHHHHh------CccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHh
Q 006378 280 AESRPLVECIEIIRS------HKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNV 353 (647)
Q Consensus 280 ~~sq~L~~ILd~L~s------hk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA 353 (647)
.-.+.|..||+.|+. |+.+++|.+||+..++||||+||++||||+||+.||+.|.|.++. +|..||.|||+||
T Consensus 15 ~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na 93 (124)
T 3mb4_A 15 PMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDID-SMVEDFVMMFNNA 93 (124)
T ss_dssp HHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccccCCHHHHcCCCCCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHH
Confidence 345789999999998 777899999999999999999999999999999999999999999 9999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHHhhc
Q 006378 354 IVFFDKNSSESAAAVELRQIVLKAMTRNT 382 (647)
Q Consensus 354 ~vYN~~~S~~~kaA~eLrklv~K~m~k~l 382 (647)
+.||+++|.+|.+|..|+++|.+.|++..
T Consensus 94 ~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 122 (124)
T 3mb4_A 94 CTYNEPESLIYKDALVLHKVLLETRRDLE 122 (124)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998765
No 8
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.93 E-value=4.4e-26 Score=205.26 Aligned_cols=101 Identities=16% Similarity=0.299 Sum_probs=97.1
Q ss_pred chhHHHHHHHHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCC
Q 006378 282 SRPLVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNS 361 (647)
Q Consensus 282 sq~L~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S 361 (647)
...|..||+.|+.++.+++|..||+..++||||+||++||||+||++||++|.|.++. +|..||.|||+||+.||+++|
T Consensus 10 ~~~l~~il~~L~~~~~~~~F~~PVd~~~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~-ef~~Dv~Li~~Na~~yN~~~s 88 (117)
T 2i7k_A 10 QEALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIE-ELKDNFKLMCTNAMIYNKPET 88 (117)
T ss_dssp HHHHHHHHHHHHTSSGGGTSSSCCCTTTSSSHHHHCSCCCCHHHHHHHHTTTSCCSHH-HHHHHHHHHHHHHHHTSCSSS
T ss_pred HHHHHHHHHHHHhCcccHHhcCCCCccccCCHHHHhCCCCCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHHHCCCCC
Confidence 3679999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC
Q 006378 362 SESAAAVELRQIVLKAMTRNTF 383 (647)
Q Consensus 362 ~~~kaA~eLrklv~K~m~k~l~ 383 (647)
.+|.+|..|+++|.+.+...+-
T Consensus 89 ~i~~~A~~L~~~f~~~~~~~~~ 110 (117)
T 2i7k_A 89 IYYKAAKKLLHSGMKILSQERL 110 (117)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987664
No 9
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.93 E-value=7.1e-26 Score=207.13 Aligned_cols=100 Identities=21% Similarity=0.298 Sum_probs=97.3
Q ss_pred chhHHHHHHHHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCC-C
Q 006378 282 SRPLVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDK-N 360 (647)
Q Consensus 282 sq~L~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~-~ 360 (647)
.+.|..||+.|..|+.+++|..||+..++||||+||++||||+||+.||+.|.|.++. +|..||.|||.||+.||++ +
T Consensus 23 ~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~~yN~~~~ 101 (135)
T 3mb3_A 23 KKQCEELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPM-ELCKDVRLIFSNSKAYTPSKR 101 (135)
T ss_dssp HHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHSCCTT
T ss_pred HHHHHHHHHHHHhCCCChhhcCCCChhhCCCHHHHhCCCcCHHHHHHHHhCCCCCCHH-HHHHHHHHHHHHHHHHCCCCC
Confidence 4679999999999999999999999999999999999999999999999999999999 9999999999999999997 9
Q ss_pred CHHHHHHHHHHHHHHHHHHhhc
Q 006378 361 SSESAAAVELRQIVLKAMTRNT 382 (647)
Q Consensus 361 S~~~kaA~eLrklv~K~m~k~l 382 (647)
|.+|.+|..|.++|.+.|...+
T Consensus 102 s~i~~~A~~L~~~f~~~~~~~~ 123 (135)
T 3mb3_A 102 SRIYSMSLRLSAFFEEHISSVL 123 (135)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999877
No 10
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.93 E-value=5.4e-26 Score=206.88 Aligned_cols=97 Identities=23% Similarity=0.411 Sum_probs=92.2
Q ss_pred HHHHHHHHHhCccCCccccCCCCC--CCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCCH
Q 006378 285 LVECIEIIRSHKFGSFFERLDATK--ETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNSS 362 (647)
Q Consensus 285 L~~ILd~L~shk~a~~F~~PVd~q--e~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S~ 362 (647)
|..||+.|+.|+.+|+|..||+.. ++||||+||++||||+||+.||++|.|.++. +|..||.|||+||++||+++|.
T Consensus 26 ~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-ef~~D~~li~~Na~~yN~~~s~ 104 (127)
T 2oss_A 26 LRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQ-ECIQDFNTMFTNCYIYNKPGDD 104 (127)
T ss_dssp HHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHHHCCCCCH
Confidence 456899999999999999999975 8999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 006378 363 ESAAAVELRQIVLKAMTRNT 382 (647)
Q Consensus 363 ~~kaA~eLrklv~K~m~k~l 382 (647)
+|.+|..|+++|.+.|.++-
T Consensus 105 i~~~A~~L~~~f~~~~~~lp 124 (127)
T 2oss_A 105 IVLMAEALEKLFLQKINELP 124 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999997643
No 11
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.93 E-value=8.2e-26 Score=204.01 Aligned_cols=101 Identities=22% Similarity=0.332 Sum_probs=97.3
Q ss_pred chhHHHHHHHHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCC-C
Q 006378 282 SRPLVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDK-N 360 (647)
Q Consensus 282 sq~L~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~-~ 360 (647)
.+.|..||+.|+.|+.+++|.+||+..++||||++|++||||+||+.||+.|.|.++. +|..||.|||.||+.||++ +
T Consensus 12 ~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~~yN~~~~ 90 (123)
T 3q2e_A 12 KKQCKELVNLIFQCEDSEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPL-EFCKDIRLIFSNAKAYTPNKR 90 (123)
T ss_dssp HHHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHSCCTT
T ss_pred HHHHHHHHHHHHhCCCcHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCCC
Confidence 4679999999999999999999999999999999999999999999999999999999 9999999999999999995 9
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcC
Q 006378 361 SSESAAAVELRQIVLKAMTRNTF 383 (647)
Q Consensus 361 S~~~kaA~eLrklv~K~m~k~l~ 383 (647)
|.+|.+|..|+++|.+.|.+.+.
T Consensus 91 s~i~~~A~~L~~~f~~~~~~~~~ 113 (123)
T 3q2e_A 91 SKIYSMTLRLSALFEEKMKKISS 113 (123)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998773
No 12
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.93 E-value=5.2e-26 Score=203.22 Aligned_cols=102 Identities=27% Similarity=0.371 Sum_probs=97.3
Q ss_pred chhHHHHHHHHHhC------ccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhh
Q 006378 282 SRPLVECIEIIRSH------KFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIV 355 (647)
Q Consensus 282 sq~L~~ILd~L~sh------k~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~v 355 (647)
.+.|..||+.|+.| +.+++|..||+..++|+||+||++||||+||+.||++|.|.++. +|..||.|||+||+.
T Consensus 7 ~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~li~~Na~~ 85 (116)
T 3iu5_A 7 IAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVN-LLTADFQLLFNNAKS 85 (116)
T ss_dssp HHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGGCHHHHHHCSSCCCHHHHHHHHHTTCCCSHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCeeeHHhcCCCCcccCCCHHHHhCCCCCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHH
Confidence 36799999999998 46999999999999999999999999999999999999999999 999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHhhcCC
Q 006378 356 FFDKNSSESAAAVELRQIVLKAMTRNTFD 384 (647)
Q Consensus 356 YN~~~S~~~kaA~eLrklv~K~m~k~l~k 384 (647)
||+++|.+|.+|..|+++|.+.+++.+++
T Consensus 86 yN~~~s~~~~~A~~L~~~f~~~~~~l~~~ 114 (116)
T 3iu5_A 86 YYKPDSPEYKAACKLWDLYLRTRNEFVQK 114 (116)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999988754
No 13
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.93 E-value=8e-26 Score=202.54 Aligned_cols=100 Identities=22% Similarity=0.343 Sum_probs=95.5
Q ss_pred chhHHHHHHHHHh-CccCCccccCCCCC--CCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcC
Q 006378 282 SRPLVECIEIIRS-HKFGSFFERLDATK--ETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFD 358 (647)
Q Consensus 282 sq~L~~ILd~L~s-hk~a~~F~~PVd~q--e~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~ 358 (647)
.+.|..+|+.|.. |+.+|+|..||++. ++||||++|++||||+||+.||+.|.|.++. +|..||.|||+||+.||+
T Consensus 13 ~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~~yN~ 91 (119)
T 3p1f_A 13 RQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPW-QYVDDVWLMFNNAWLYNR 91 (119)
T ss_dssp HHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCC
Confidence 3678999999887 78999999999987 8999999999999999999999999999999 999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhc
Q 006378 359 KNSSESAAAVELRQIVLKAMTRNT 382 (647)
Q Consensus 359 ~~S~~~kaA~eLrklv~K~m~k~l 382 (647)
++|.+|.+|..|+++|.+.|...+
T Consensus 92 ~~s~i~~~A~~L~~~f~~~~~~~~ 115 (119)
T 3p1f_A 92 KTSRVYKFCSKLAEVFEQEIDPVM 115 (119)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998876
No 14
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.93 E-value=1.4e-25 Score=206.02 Aligned_cols=103 Identities=24% Similarity=0.399 Sum_probs=97.6
Q ss_pred cchhHHHHHHHHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhc--CCcCCcHHHHHHHHHHHHHHhhhhcC
Q 006378 281 ESRPLVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEE--NWYSGSNSSFFHDLLLLFNNVIVFFD 358 (647)
Q Consensus 281 ~sq~L~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLes--g~Y~S~~~EF~rDLlLmf~NA~vYN~ 358 (647)
..+.|..||+.|+.|+.+|+|..||+. ++||||+||++||||.||+.||+. |.|.++. +|.+||.|||+||++||+
T Consensus 21 ~~~~c~~il~~L~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~-ef~~Dv~Lif~Na~~yN~ 98 (135)
T 2yyn_A 21 DKRKCERLLLFLYCHEMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPE-DFVADFRLIFQNCAEFNE 98 (135)
T ss_dssp HHHHHHHHHHHHHTSGGGGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHH-HHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhCccchhhcCCCcc-cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHH-HHHHHHHHHHHHHHHHCC
Confidence 346799999999999999999999998 799999999999999999999998 5999999 999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 006378 359 KNSSESAAAVELRQIVLKAMTRNTFDP 385 (647)
Q Consensus 359 ~~S~~~kaA~eLrklv~K~m~k~l~k~ 385 (647)
++|.+|.+|..|+++|.+.|.+.+...
T Consensus 99 ~~s~i~~~A~~L~~~f~~~~~~~~~~~ 125 (135)
T 2yyn_A 99 PDSEVANAGIKLENYFEELLKNLYPEK 125 (135)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999987544
No 15
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.93 E-value=1e-25 Score=211.50 Aligned_cols=97 Identities=24% Similarity=0.403 Sum_probs=92.9
Q ss_pred HHHHHHHHHhCccCCccccCCCCC--CCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCCH
Q 006378 285 LVECIEIIRSHKFGSFFERLDATK--ETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNSS 362 (647)
Q Consensus 285 L~~ILd~L~shk~a~~F~~PVd~q--e~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S~ 362 (647)
|..||+.|+.|+++|+|..||+.. ++||||+||++||||.||+.||+++.|.++. +|+.||.|||.||++||+++|.
T Consensus 37 ~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~-ef~~Dv~Lif~Na~~YN~~~s~ 115 (154)
T 4alg_A 37 HKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAAS-ECMQDFNTMFTNCYIYNKPTDD 115 (154)
T ss_dssp HHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCCCH
Confidence 456789999999999999999987 7999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 006378 363 ESAAAVELRQIVLKAMTRNT 382 (647)
Q Consensus 363 ~~kaA~eLrklv~K~m~k~l 382 (647)
+|.+|..|+++|.+.|.++.
T Consensus 116 i~~~A~~L~~~f~~~~~~l~ 135 (154)
T 4alg_A 116 IVLMAQTLEKIFLQKVASMP 135 (154)
T ss_dssp HHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999998765
No 16
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.93 E-value=7e-26 Score=206.41 Aligned_cols=103 Identities=19% Similarity=0.351 Sum_probs=97.4
Q ss_pred cchhHHHHHHHHHhCc-------cCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHh
Q 006378 281 ESRPLVECIEIIRSHK-------FGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNV 353 (647)
Q Consensus 281 ~sq~L~~ILd~L~shk-------~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA 353 (647)
-.+.|..||+.|+.|+ .+++|..||+..++|+||+||++||||+||++||++|.|.++. +|.+||.|||+||
T Consensus 12 l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-~f~~Dv~Li~~Na 90 (129)
T 2grc_A 12 LTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLN-DLEKDVMLLCQNA 90 (129)
T ss_dssp HHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHH
Confidence 3578999999999886 6899999999999999999999999999999999999999999 9999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHHhhcCC
Q 006378 354 IVFFDKNSSESAAAVELRQIVLKAMTRNTFD 384 (647)
Q Consensus 354 ~vYN~~~S~~~kaA~eLrklv~K~m~k~l~k 384 (647)
+.||+++|.+|.+|..|+++|.+.|+++...
T Consensus 91 ~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 121 (129)
T 2grc_A 91 QTFNLEGSLIYEDSIVLQSVFTSVRQKIEKE 121 (129)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999887643
No 17
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.93 E-value=1.1e-25 Score=203.58 Aligned_cols=98 Identities=17% Similarity=0.296 Sum_probs=95.2
Q ss_pred chhHHHHHHHHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCC
Q 006378 282 SRPLVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNS 361 (647)
Q Consensus 282 sq~L~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S 361 (647)
.+.|..||+.|..|+.+++|..||+..++||||+||++||||+||+.||++|.|.++. +|..||.|||+||+.||+++|
T Consensus 15 ~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~~yN~~~s 93 (123)
T 3hme_A 15 QQLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVT-EFKADFKLMCDNAMTYNRPDT 93 (123)
T ss_dssp HHHHHHHHHHHHTTCTTCSSSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHH-HHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHhCCccHhhcCCCChhhccCHHHHCCCCCCHHHHHHHhccCCCCCHH-HHHHHHHHHHHHHHHHCCCCC
Confidence 4679999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 006378 362 SESAAAVELRQIVLKAMTR 380 (647)
Q Consensus 362 ~~~kaA~eLrklv~K~m~k 380 (647)
.+|.+|..|+++|.+.|.+
T Consensus 94 ~~~~~A~~L~~~~~~~~~~ 112 (123)
T 3hme_A 94 VYYKLAKKILHAGFKMMSK 112 (123)
T ss_dssp HHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998865
No 18
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.92 E-value=1.7e-25 Score=204.56 Aligned_cols=100 Identities=23% Similarity=0.345 Sum_probs=96.2
Q ss_pred chhHHHHHHHHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCC
Q 006378 282 SRPLVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNS 361 (647)
Q Consensus 282 sq~L~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S 361 (647)
...|..||+.|+.|+.+|+|..||+..++||||+||++||||+||+.||++|.|.++. +|..||.|||+||+.||+++|
T Consensus 15 ~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~~yN~~~s 93 (135)
T 3rcw_A 15 TVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLH-EFEEDFDLIIDNCMKYNARDT 93 (135)
T ss_dssp HHHHHHHHHHHHHTCTTCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHhCCcchhhcCCCChhhcCCHHHHhCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCCC
Confidence 4679999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 006378 362 SESAAAVELRQIVLKAMTRNT 382 (647)
Q Consensus 362 ~~~kaA~eLrklv~K~m~k~l 382 (647)
.+|.+|..|+++|.+.|+...
T Consensus 94 ~~~~~A~~L~~~~~~~~~~~~ 114 (135)
T 3rcw_A 94 VFYRAAVRLRDQGGVVLRQAR 114 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988754
No 19
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.92 E-value=1e-25 Score=205.75 Aligned_cols=99 Identities=19% Similarity=0.265 Sum_probs=93.7
Q ss_pred chhHHHHHHHHHhCcc---CCccccCCCCC--CCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhh
Q 006378 282 SRPLVECIEIIRSHKF---GSFFERLDATK--ETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVF 356 (647)
Q Consensus 282 sq~L~~ILd~L~shk~---a~~F~~PVd~q--e~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vY 356 (647)
-+.|..||+.|+.|+. +|+|..||+.. ++||||+||++||||+||+.||++|.|.++. +|..||.|||+||++|
T Consensus 24 l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~-ef~~Dv~li~~Na~~y 102 (130)
T 2ouo_A 24 LKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQ-EFGADVRLMFSNCYKY 102 (130)
T ss_dssp HHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 3679999999999874 89999999986 6999999999999999999999999999999 9999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHhh
Q 006378 357 FDKNSSESAAAVELRQIVLKAMTRN 381 (647)
Q Consensus 357 N~~~S~~~kaA~eLrklv~K~m~k~ 381 (647)
|+++|.+|.+|..|+++|.+.|.++
T Consensus 103 N~~~s~i~~~A~~L~~~f~~~~~~l 127 (130)
T 2ouo_A 103 NPPDHEVVAMARKLQDVFEMRFAKM 127 (130)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHTS
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999864
No 20
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.92 E-value=3.2e-25 Score=199.39 Aligned_cols=100 Identities=22% Similarity=0.335 Sum_probs=95.6
Q ss_pred chhHHHHHHHHHhCcc------CCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhh
Q 006378 282 SRPLVECIEIIRSHKF------GSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIV 355 (647)
Q Consensus 282 sq~L~~ILd~L~shk~------a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~v 355 (647)
...|..||+.|+.++. +++|.+||+..++|+||+||++||||+||+.||+.|.|.++. +|..||.|||.||+.
T Consensus 10 ~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~li~~Na~~ 88 (120)
T 3ljw_A 10 KEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIH-AMAKDIDLLAKNAKT 88 (120)
T ss_dssp HHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCSHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcCCCcccHHhcCCCCcccCCChHHHcCCCCCHHHHHHHHccCCCCCHH-HHHHHHHHHHHHHHH
Confidence 4679999999999887 999999999999999999999999999999999999999999 999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHhhc
Q 006378 356 FFDKNSSESAAAVELRQIVLKAMTRNT 382 (647)
Q Consensus 356 YN~~~S~~~kaA~eLrklv~K~m~k~l 382 (647)
||+++|.+|.+|..|+++|.+.|.++-
T Consensus 89 yN~~~s~~~~~A~~L~~~f~~~~~~i~ 115 (120)
T 3ljw_A 89 YNEPGSQVFKDANSIKKIFYMKKAEIE 115 (120)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999998753
No 21
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.92 E-value=2.6e-25 Score=201.28 Aligned_cols=100 Identities=22% Similarity=0.318 Sum_probs=95.0
Q ss_pred chhHHHHHHHHHhCc------cCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhh
Q 006378 282 SRPLVECIEIIRSHK------FGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIV 355 (647)
Q Consensus 282 sq~L~~ILd~L~shk------~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~v 355 (647)
.+.|..||+.|+.|. .+|+|.+||+..++||||++|++||||+||++||++|.|.++. +|..||.|||+||+.
T Consensus 11 ~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~li~~Na~~ 89 (126)
T 3mqm_A 11 AQIFKEICDGIISYKDSSRQALAAPLLNLPPKKKNADYYEKISDPLDLITIEKQILTGYYKTVE-AFDADMLKVFRNAEK 89 (126)
T ss_dssp HHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGGCTTHHHHCSSCCCHHHHHHHHHHTCCCSHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCCCChhHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHH
Confidence 467899999999876 4999999999999999999999999999999999999999999 999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHhhc
Q 006378 356 FFDKNSSESAAAVELRQIVLKAMTRNT 382 (647)
Q Consensus 356 YN~~~S~~~kaA~eLrklv~K~m~k~l 382 (647)
||+++|.+|.+|..|+++|.+.|++..
T Consensus 90 yN~~~s~~~~~A~~L~~~f~~~~~~~~ 116 (126)
T 3mqm_A 90 YYGRKSPVGRDVCRLRKAYYNARHEAS 116 (126)
T ss_dssp HHCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998765
No 22
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.92 E-value=4.4e-25 Score=202.03 Aligned_cols=100 Identities=23% Similarity=0.299 Sum_probs=95.6
Q ss_pred chhHHHHHHHHHhCcc------CCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhh
Q 006378 282 SRPLVECIEIIRSHKF------GSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIV 355 (647)
Q Consensus 282 sq~L~~ILd~L~shk~------a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~v 355 (647)
+..|..||+.|+++.. +++|.+||+...+|+||+||++||||+||+.||++|.|.++. +|..||.|||.||+.
T Consensus 19 ~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~-ef~~Dv~Lif~Na~~ 97 (130)
T 3k2j_A 19 YFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLD-HLECDLNLMFENAKR 97 (130)
T ss_dssp HHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCccHhhcCCCChhhCccHHHHcCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHH
Confidence 5779999999998754 999999999999999999999999999999999999999999 999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHhhc
Q 006378 356 FFDKNSSESAAAVELRQIVLKAMTRNT 382 (647)
Q Consensus 356 YN~~~S~~~kaA~eLrklv~K~m~k~l 382 (647)
||+++|.+|.+|..|+++|.+.|++..
T Consensus 98 yN~~~s~i~~~A~~L~~~f~~~~~~l~ 124 (130)
T 3k2j_A 98 YNVPNSAIYKRVLKLQQVMQAKKKELA 124 (130)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998765
No 23
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.92 E-value=1.5e-25 Score=200.95 Aligned_cols=100 Identities=19% Similarity=0.266 Sum_probs=95.0
Q ss_pred chhHHHHHHHHHhCcc---CCccccCCCCCC--CCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhh
Q 006378 282 SRPLVECIEIIRSHKF---GSFFERLDATKE--TPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVF 356 (647)
Q Consensus 282 sq~L~~ILd~L~shk~---a~~F~~PVd~qe--~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vY 356 (647)
-+.|..||..|..|+. +|+|..||+... +||||+||++||||+||+.||++|.|.++. +|..||.|||.||+.|
T Consensus 11 l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~~y 89 (120)
T 3jvl_A 11 LKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQ-EFGADVRLMFSNCYKY 89 (120)
T ss_dssp HHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 3678999999999887 999999999875 999999999999999999999999999999 9999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHhhc
Q 006378 357 FDKNSSESAAAVELRQIVLKAMTRNT 382 (647)
Q Consensus 357 N~~~S~~~kaA~eLrklv~K~m~k~l 382 (647)
|+++|.+|.+|..|+++|.+.|.++.
T Consensus 90 N~~~s~~~~~A~~L~~~f~~~~~~~p 115 (120)
T 3jvl_A 90 NPPDHEVVAMARKLQDVFEMRFAKMP 115 (120)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCc
Confidence 99999999999999999999998754
No 24
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.91 E-value=5.3e-25 Score=208.84 Aligned_cols=100 Identities=20% Similarity=0.330 Sum_probs=93.5
Q ss_pred chhHHHHHHHHHhCccCCccccCCCCC--CCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCC
Q 006378 282 SRPLVECIEIIRSHKFGSFFERLDATK--ETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDK 359 (647)
Q Consensus 282 sq~L~~ILd~L~shk~a~~F~~PVd~q--e~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~ 359 (647)
...|..||+.|+.|+.+++|..||++. ++|+||+||++||||+||+.||+.|.|.++. +|..||.|||.||+.||++
T Consensus 23 ~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~-ef~~Dv~Lif~Na~~yN~~ 101 (166)
T 3fkm_X 23 YLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPS-EFVKDVQLIFDNCSLYNTS 101 (166)
T ss_dssp HHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHH-HHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHH-HHHHHHHHHHHHHHHHCCC
Confidence 367999999999999999999999975 7999999999999999999999999999999 9999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhc
Q 006378 360 NSSESAAAVELRQIVLKAMTRNT 382 (647)
Q Consensus 360 ~S~~~kaA~eLrklv~K~m~k~l 382 (647)
+|.+|.+|..|+++|.+.|.+..
T Consensus 102 ~s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 102 NSVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999998754
No 25
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.91 E-value=4.2e-25 Score=208.09 Aligned_cols=99 Identities=19% Similarity=0.369 Sum_probs=95.6
Q ss_pred cchhHHHHHHHHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCC
Q 006378 281 ESRPLVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKN 360 (647)
Q Consensus 281 ~sq~L~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~ 360 (647)
..+.|..||+.|+.|+.+++|..||+..++|+||+||++||||+||++||++|.|.++. +|.+||.|||+||++||+++
T Consensus 73 ~~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~li~~Na~~yN~~~ 151 (174)
T 2ri7_A 73 DYEGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLT-EFVADMTKIFDNCRYYNPSD 151 (174)
T ss_dssp HHHHHHHHHHHHHTSGGGTTTSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCBHH-HHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhhhhhhhhhcCCCcccCCchHHHhCCcCCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHHHCCCC
Confidence 45679999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHh
Q 006378 361 SSESAAAVELRQIVLKAMTR 380 (647)
Q Consensus 361 S~~~kaA~eLrklv~K~m~k 380 (647)
|.+|.+|..|+++|.+.|.+
T Consensus 152 s~~~~~A~~L~~~f~~~~~~ 171 (174)
T 2ri7_A 152 SPFYQCAEVLESFFVQKLKG 171 (174)
T ss_dssp SHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998865
No 26
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.91 E-value=1.5e-24 Score=204.58 Aligned_cols=99 Identities=21% Similarity=0.307 Sum_probs=91.0
Q ss_pred hhHHHHHHH-----HHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhc
Q 006378 283 RPLVECIEI-----IRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFF 357 (647)
Q Consensus 283 q~L~~ILd~-----L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN 357 (647)
..|..||+. |+.|+.+|+|..||+...+|+||+||++||||+||+.||+.|.|.++. +|..||.|||.||++||
T Consensus 28 ~~l~~iL~~i~~~kl~~~~~s~~F~~PVd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~-ef~~Dv~Lif~Na~~yN 106 (158)
T 3uv4_A 28 VAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRE-SFLDDVNLILANSVKYN 106 (158)
T ss_dssp HHHHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCchhhcCcCChhhcccHHHHcCCccCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHHHC
Confidence 345555555 455899999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhc
Q 006378 358 DKNSSESAAAVELRQIVLKAMTRNT 382 (647)
Q Consensus 358 ~~~S~~~kaA~eLrklv~K~m~k~l 382 (647)
+++|.+|.+|..|..+|.+.|.+.-
T Consensus 107 ~~~s~i~~~A~~L~~~~~~~l~e~~ 131 (158)
T 3uv4_A 107 GPESQYTKTAQEIVNVCYQTLTEYD 131 (158)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHTH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987754
No 27
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.91 E-value=3.5e-24 Score=195.25 Aligned_cols=99 Identities=17% Similarity=0.286 Sum_probs=92.4
Q ss_pred hhHHHHHHHHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCCH
Q 006378 283 RPLVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNSS 362 (647)
Q Consensus 283 q~L~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S~ 362 (647)
..|..||+.|..|+.+++|..||+..++||||+||++||||+||+.||++|.|.++. +|..||.|||.||+.||+++|+
T Consensus 13 ~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~~yN~~~s~ 91 (130)
T 3dai_A 13 IFLRNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVK-DYLRDIDLICSNALEYNPDRDP 91 (130)
T ss_dssp HHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHCCSSSH
T ss_pred HHHHHHHHHHHcCCccHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhCCCCCCHH-HHHHHHHHHHHHHHHHCCCCCh
Confidence 468899999999999999999999999999999999999999999999999999999 9999999999999999999997
Q ss_pred H----HHHHHHHHHHHHHHHHhhc
Q 006378 363 E----SAAAVELRQIVLKAMTRNT 382 (647)
Q Consensus 363 ~----~kaA~eLrklv~K~m~k~l 382 (647)
+ +..|..|++.+...+...+
T Consensus 92 ~~~~i~~~A~~L~~~~~~~i~~el 115 (130)
T 3dai_A 92 GDRLIRHRACALRDTAYAIIKEEL 115 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7 6778888888888887554
No 28
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.90 E-value=3.9e-24 Score=198.76 Aligned_cols=104 Identities=18% Similarity=0.304 Sum_probs=96.2
Q ss_pred chhHHHHHHHHHhCcc-------CCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhh
Q 006378 282 SRPLVECIEIIRSHKF-------GSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVI 354 (647)
Q Consensus 282 sq~L~~ILd~L~shk~-------a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~ 354 (647)
.+.|..||+.|+.+.. +++|..||+..++||||+||++||||+||+.||+.|.|.++. +|..||.|||.||+
T Consensus 26 ~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-ef~~D~~li~~Na~ 104 (150)
T 3tlp_A 26 KQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEE-GMIEDMKLMFRNAR 104 (150)
T ss_dssp HHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCcccHHhcCCCchhhCcCHHHHhCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHH
Confidence 4678888888887654 999999999999999999999999999999999999999999 99999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 006378 355 VFFDKNSSESAAAVELRQIVLKAMTRNTFDPN 386 (647)
Q Consensus 355 vYN~~~S~~~kaA~eLrklv~K~m~k~l~k~~ 386 (647)
.||+++|.+|.+|..|+++|.+.|.+....++
T Consensus 105 ~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~pd 136 (150)
T 3tlp_A 105 HYNEEGSQVYNDAHILEKLLKEKRKELGPLPD 136 (150)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHHCCC--
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 99999999999999999999999998875443
No 29
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.90 E-value=8.1e-24 Score=201.79 Aligned_cols=100 Identities=25% Similarity=0.416 Sum_probs=95.3
Q ss_pred cchhHHHHHHHHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhc--CCcCCcHHHHHHHHHHHHHHhhhhcC
Q 006378 281 ESRPLVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEE--NWYSGSNSSFFHDLLLLFNNVIVFFD 358 (647)
Q Consensus 281 ~sq~L~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLes--g~Y~S~~~EF~rDLlLmf~NA~vYN~ 358 (647)
....|..||..|+.|+.+++|..||+. ++|+||+||++||||+||+.||+. |.|.++. +|.+||.|||.||++||+
T Consensus 82 ~~~~c~~il~~l~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~-ef~~Dv~li~~Na~~yN~ 159 (184)
T 3o36_A 82 DKRKCERLLLFLYCHEMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPE-DFVADFRLIFQNCAEFNE 159 (184)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSTTCSCCSHH-HHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhchhhhhhcccccc-CCCchhhhcCCCCCHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHHHHHHHCC
Confidence 346799999999999999999999996 599999999999999999999998 7999999 999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhc
Q 006378 359 KNSSESAAAVELRQIVLKAMTRNT 382 (647)
Q Consensus 359 ~~S~~~kaA~eLrklv~K~m~k~l 382 (647)
++|.+|.+|..|+++|.+.|.+++
T Consensus 160 ~~s~v~~~a~~L~~~f~~~~~~~~ 183 (184)
T 3o36_A 160 PDSEVANAGIKLENYFEELLKNLY 183 (184)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999876
No 30
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=8.6e-23 Score=187.41 Aligned_cols=96 Identities=17% Similarity=0.282 Sum_probs=89.7
Q ss_pred hhHHHHHHHHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCCH
Q 006378 283 RPLVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNSS 362 (647)
Q Consensus 283 q~L~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S~ 362 (647)
..|..||+.|+.|+.+++|..| +||||+||++||||+||+.||+.|.|.++. +|..||.|||+||++||+++|+
T Consensus 15 ~~~~~il~~l~~~~~~~~F~~P-----~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~-~f~~D~~Li~~Na~~yN~~~s~ 88 (131)
T 2dkw_A 15 LFLRDVTKRLATDKRFNIFSKP-----VSDYLEVIKEPMDLSTVITKIDKHNYLTAK-DFLKDIDLICSNALEYNPDKDP 88 (131)
T ss_dssp HHHHHHHHHHHHSGGGCTTSSC-----CSSCTTSCSSCCCHHHHHHHHHTTCCCSSH-HHHHHHHHHHHHHHHSCCCSST
T ss_pred HHHHHHHHHHHhCccchhhcCc-----CccHHhHcCCCcCHHHHHHHHcCCCCCCHH-HHHHHHHHHHHHHHHHCCCCCh
Confidence 5688999999999999999999 999999999999999999999999999999 9999999999999999999996
Q ss_pred ----HHHHHHHHHHHHHHHHHhhcCC
Q 006378 363 ----ESAAAVELRQIVLKAMTRNTFD 384 (647)
Q Consensus 363 ----~~kaA~eLrklv~K~m~k~l~k 384 (647)
+|.+|..|++.|...|...+..
T Consensus 89 ~~~~i~~~A~~L~~~~~~~l~~~l~~ 114 (131)
T 2dkw_A 89 GDKIIRHRACTLKDTAHAIIAAELDP 114 (131)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999988776643
No 31
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.88 E-value=8.6e-23 Score=205.28 Aligned_cols=101 Identities=19% Similarity=0.233 Sum_probs=97.2
Q ss_pred cchhHHHHHHHHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCC
Q 006378 281 ESRPLVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKN 360 (647)
Q Consensus 281 ~sq~L~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~ 360 (647)
-...|..||+.|+.|+.+|+|..||+...+||||.||++||||+||+.||++|.|.++. +|..||.|||+||++||+++
T Consensus 15 l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~~yN~~~ 93 (265)
T 3uv5_A 15 LSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSRE-EFREHLELIVKNSATYNGPK 93 (265)
T ss_dssp HHHHHHHHHHHHHTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCCchhhhCCCChhhcCCHHHHhCCCCcHHHHHHHHHcCCCCCHH-HHHHHHHHHHhhhhhcCCCC
Confidence 35679999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhhc
Q 006378 361 SSESAAAVELRQIVLKAMTRNT 382 (647)
Q Consensus 361 S~~~kaA~eLrklv~K~m~k~l 382 (647)
|.+|.+|..|..+|.+.|.+..
T Consensus 94 s~i~~~A~~l~~~~~~~~~~~~ 115 (265)
T 3uv5_A 94 HSLTQISQSMLDLCDEKLKEKE 115 (265)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTH
T ss_pred ChHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998754
No 32
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.88 E-value=8.3e-23 Score=198.52 Aligned_cols=101 Identities=20% Similarity=0.331 Sum_probs=96.4
Q ss_pred cchhHHHHHHHHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhc---CCcCCcHHHHHHHHHHHHHHhhhhc
Q 006378 281 ESRPLVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEE---NWYSGSNSSFFHDLLLLFNNVIVFF 357 (647)
Q Consensus 281 ~sq~L~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLes---g~Y~S~~~EF~rDLlLmf~NA~vYN 357 (647)
....|..||..|+.|+.+++|..||+. ++|+||+||++||||+||++||+. |.|.++. +|.+||.|||.||++||
T Consensus 82 ~~~~c~~il~~l~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~-~f~~Dv~li~~Na~~yN 159 (207)
T 3u5n_A 82 DQRKCERLLLYLYCHELSIEFQEPVPA-SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPD-DFVADVRLIFKNCERFN 159 (207)
T ss_dssp HHHHHHHHHHHHHTSTTCGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhhhhccCCh-hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHH-HHHHHHHHHHHHHHHHC
Confidence 346799999999999999999999987 799999999999999999999997 8999999 99999999999999999
Q ss_pred C-----------------CCCHHHHHHHHHHHHHHHHHHhhcC
Q 006378 358 D-----------------KNSSESAAAVELRQIVLKAMTRNTF 383 (647)
Q Consensus 358 ~-----------------~~S~~~kaA~eLrklv~K~m~k~l~ 383 (647)
+ +++.++.+|..|+.+|.++|.+++.
T Consensus 160 ~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~p 202 (207)
T 3u5n_A 160 EMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIYS 202 (207)
T ss_dssp HHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHST
T ss_pred CCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhCC
Confidence 9 9999999999999999999999884
No 33
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.87 E-value=2.8e-22 Score=201.55 Aligned_cols=90 Identities=23% Similarity=0.348 Sum_probs=87.2
Q ss_pred HHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHH
Q 006378 292 IRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNSSESAAAVELR 371 (647)
Q Consensus 292 L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S~~~kaA~eLr 371 (647)
|+.|+.+|+|..||+...+||||+||++||||+||+.||+.|.|.++. +|..||.|||.||+.||+++|.+|.+|..|.
T Consensus 149 l~~~~~~~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~-~f~~D~~lif~Na~~yN~~~s~~~~~A~~l~ 227 (265)
T 3uv5_A 149 MMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRE-SFLDDVNLILANSVKYNGPESQYTKTAQEIV 227 (265)
T ss_dssp TTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred HHhhhhhHHHhCCCChhHhCcHHHHhCCcccHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHhhc
Q 006378 372 QIVLKAMTRNT 382 (647)
Q Consensus 372 klv~K~m~k~l 382 (647)
.+|.+.|....
T Consensus 228 ~~~~~~~~~~~ 238 (265)
T 3uv5_A 228 NVCYQTLTEYD 238 (265)
T ss_dssp HHHHHHHHHTH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 34
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.87 E-value=1.4e-22 Score=195.59 Aligned_cols=97 Identities=20% Similarity=0.235 Sum_probs=91.3
Q ss_pred chhHHHHHHHHHhCccCCccccCCCCCCCCchhhhhc--CCCCHHHHHHHHhcC---CcCCcHHHHHHHHHHHHHHhhhh
Q 006378 282 SRPLVECIEIIRSHKFGSFFERLDATKETPDYRSIVR--QHTDLETIRTRLEEN---WYSGSNSSFFHDLLLLFNNVIVF 356 (647)
Q Consensus 282 sq~L~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIk--rPMDL~TIrsKLesg---~Y~S~~~EF~rDLlLmf~NA~vY 356 (647)
...|..||+.|+.|+.+|+|++||+ |+||+||+ +||||+||++||+++ .|.++. +|..||.|||+||++|
T Consensus 78 ~~~c~~iL~~l~~~~~s~pF~~pV~----~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~-eF~~Dv~Lif~N~~~y 152 (189)
T 2ro1_A 78 QRKCERVLLALFCHEPCRPLHQLAT----DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQ-EFAQDVGRMFKQFNKL 152 (189)
T ss_dssp HHHHHHHHHHHHHSTTHHHHHSCSC----CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCccchhhcCCCC----hhhhccccCCCcccHHHHHHHHhcCCCcccCCHH-HHHHHHHHHHHHHHHH
Confidence 3568999999999999999999998 78999998 799999999999999 999999 9999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHhhcCC
Q 006378 357 FDKNSSESAAAVELRQIVLKAMTRNTFD 384 (647)
Q Consensus 357 N~~~S~~~kaA~eLrklv~K~m~k~l~k 384 (647)
| +++.+|.+|..|+++|.+.|.+.+..
T Consensus 153 N-~~s~~~~~a~~L~~~Fe~~~~~~~~~ 179 (189)
T 2ro1_A 153 T-EDKADVQSIIGLQRFFETRMNEAFGD 179 (189)
T ss_dssp C-CSSCSSHHHHHHHHHHHHHHHHHTTT
T ss_pred C-CCCHHHHHHHHHHHHHHHHHHHhcCc
Confidence 9 58889999999999999999998853
No 35
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.86 E-value=1.6e-22 Score=206.32 Aligned_cols=99 Identities=19% Similarity=0.248 Sum_probs=94.7
Q ss_pred chhHHHHHHHHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCC
Q 006378 282 SRPLVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNS 361 (647)
Q Consensus 282 sq~L~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S 361 (647)
+..|..||+.|+.|+.+|+|..||+...+||||+||++||||+||+.||++|.|.+.. +|..||.|||+||++||+++|
T Consensus 49 ~~~~~~il~~l~~~~~a~~F~~pV~~~~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~-~f~~D~~li~~Na~~yN~~~s 127 (292)
T 3aad_A 49 SSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSRE-EFREHLELIVKNSATYNGPKH 127 (292)
T ss_dssp HHHHHHHHHHHSSSTTCGGGSSSCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHTCSSS
T ss_pred HHHHHHHHHHHHhCCcchhhcCCCCchhcccHHHHcCCcCCHHHHHHHhhCCCcCCHH-HHHHHHHHHHHHHHHHcCCch
Confidence 4678999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 006378 362 SESAAAVELRQIVLKAMTRN 381 (647)
Q Consensus 362 ~~~kaA~eLrklv~K~m~k~ 381 (647)
.+|.+|..|+.+|.+.|...
T Consensus 128 ~i~~~A~~L~~~~~~~~~~~ 147 (292)
T 3aad_A 128 SLTQISQSMLDLCDEKLKEK 147 (292)
T ss_dssp HHHHHHTHHHHTTTTTGGGS
T ss_pred HHHHHHHHHHHHHHhhhhcc
Confidence 99999999999998877653
No 36
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.85 E-value=1.1e-21 Score=200.31 Aligned_cols=91 Identities=23% Similarity=0.337 Sum_probs=87.1
Q ss_pred HHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCCHHHHHHHHH
Q 006378 291 IIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNSSESAAAVEL 370 (647)
Q Consensus 291 ~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S~~~kaA~eL 370 (647)
.|+.|+.+|+|..||+..++||||+||++||||+||+.||++|.|.++. +|..||.|||.||+.||+++|.+|.+|..|
T Consensus 181 ~l~~~~~s~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~Li~~Na~~yN~~~s~i~~~A~~L 259 (292)
T 3aad_A 181 KMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRE-SFLDDVNLILANSVKYNGPESQYTKTAQEI 259 (292)
T ss_dssp TGGGSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHHCTTSHHHHHHHHH
T ss_pred hhhcCcchhHHHhcccccccccHHHHcCCcCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 3678999999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc
Q 006378 371 RQIVLKAMTRNT 382 (647)
Q Consensus 371 rklv~K~m~k~l 382 (647)
+++|.+.|....
T Consensus 260 ~~~~~~~~~~~~ 271 (292)
T 3aad_A 260 VNVCYQTLTEYD 271 (292)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 37
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.85 E-value=1.4e-21 Score=204.74 Aligned_cols=88 Identities=26% Similarity=0.351 Sum_probs=85.2
Q ss_pred hCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHH
Q 006378 294 SHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNSSESAAAVELRQI 373 (647)
Q Consensus 294 shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S~~~kaA~eLrkl 373 (647)
.|+++|+|.+||+..++||||+||++||||+||+.||++|.|.++. +|..||.|||+||+.||+++|.+|.+|..|+++
T Consensus 227 ~~~~s~~F~~pvd~~~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~-ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~ 305 (361)
T 2r10_A 227 KVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIY-DFIIDMLLVFQNAHIFNDPSALIYKDATTLTNY 305 (361)
T ss_dssp SSCTTGGGSSCCCTTTCTHHHHHCSSCCCHHHHHHHHHHTCCCBHH-HHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHH
T ss_pred CCcchhcccCCCChhhcccHHHHhcCcccHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHhhc
Q 006378 374 VLKAMTRNT 382 (647)
Q Consensus 374 v~K~m~k~l 382 (647)
|.+.|.+.+
T Consensus 306 f~~~~~~~~ 314 (361)
T 2r10_A 306 FNYLIQKEF 314 (361)
T ss_dssp HHHHHHHTH
T ss_pred HHHHHHHhc
Confidence 999998864
No 38
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.85 E-value=1.3e-21 Score=201.78 Aligned_cols=88 Identities=26% Similarity=0.351 Sum_probs=85.7
Q ss_pred hCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHH
Q 006378 294 SHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNSSESAAAVELRQI 373 (647)
Q Consensus 294 shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S~~~kaA~eLrkl 373 (647)
.|+.+|+|.+||+..++|+||+||++||||+||++||++|.|.++. +|..||.|||+||+.||+++|.+|.+|..|+++
T Consensus 177 ~~~~s~~F~~pvd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~-ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~ 255 (311)
T 2r0y_A 177 KVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIY-DFIIDMLLVFQNAHIFNDPSALIYKDATTLTNY 255 (311)
T ss_dssp SSCTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCBHH-HHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHH
T ss_pred CCccHHHHhCCCChhhcccHHHHhCCccCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHhhc
Q 006378 374 VLKAMTRNT 382 (647)
Q Consensus 374 v~K~m~k~l 382 (647)
|.+.|++.+
T Consensus 256 f~~~~~~~~ 264 (311)
T 2r0y_A 256 FNYLIQKEF 264 (311)
T ss_dssp HHHHHHHTH
T ss_pred HHHHHHHhc
Confidence 999998864
No 39
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.79 E-value=7.2e-20 Score=191.88 Aligned_cols=95 Identities=17% Similarity=0.253 Sum_probs=84.6
Q ss_pred hHHHHHHHHHh--CccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcC-CcHHHHHHHHHHHHHHhhhhcCCC
Q 006378 284 PLVECIEIIRS--HKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYS-GSNSSFFHDLLLLFNNVIVFFDKN 360 (647)
Q Consensus 284 ~L~~ILd~L~s--hk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~-S~~~EF~rDLlLmf~NA~vYN~~~ 360 (647)
.|..+|+.|.. +.++++|..||+..++||||+||++||||+||++|| +.|. ++. +|..||.|||+||+.||.++
T Consensus 82 ~~~~~l~~l~~~~~~~~~~F~~p~~~~~~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~-~f~~D~~li~~Na~~yN~~~ 158 (361)
T 2r10_A 82 FISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPS-NFLLDVELLTKNCQAYNEYD 158 (361)
T ss_dssp HHHHHHHHHHHHTHHHHGGGSSCCCTTTCTTHHHHCSSCCCHHHHHTSC--CCSTTHHH-HHHHHHHHHHHHHHHHBCSS
T ss_pred HHHHHHHHHHHcCCcccHHhcCCCCcccCCChHhhcCCCcCHHHHHHHh--hccCCCHH-HHHHHHHHHHHHHhhcCCCC
Confidence 45566677654 346899999999999999999999999999999999 5554 788 99999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhh
Q 006378 361 SSESAAAVELRQIVLKAMTRN 381 (647)
Q Consensus 361 S~~~kaA~eLrklv~K~m~k~ 381 (647)
|.+|.+|..|+++|.++|.+.
T Consensus 159 s~i~~~a~~l~~~~~~~~~k~ 179 (361)
T 2r10_A 159 SLIVKNSMQVVMLIEFEVLKA 179 (361)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999988753
No 40
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.77 E-value=2.3e-19 Score=185.05 Aligned_cols=94 Identities=17% Similarity=0.269 Sum_probs=83.0
Q ss_pred HHHHHHHHHh--CccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcC-CcHHHHHHHHHHHHHHhhhhcCCCC
Q 006378 285 LVECIEIIRS--HKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYS-GSNSSFFHDLLLLFNNVIVFFDKNS 361 (647)
Q Consensus 285 L~~ILd~L~s--hk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~-S~~~EF~rDLlLmf~NA~vYN~~~S 361 (647)
+..+|+.+.. +..+++|.+||+..++||||+||++||||+||++|| +.|. ++. +|..||.|||+||+.||.++|
T Consensus 33 ~~~~L~~~~~~~r~~~~~F~~p~~~~~~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~-~f~~D~~li~~Na~~yN~~~s 109 (311)
T 2r0y_A 33 ISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPS-NFLLDVELLTKNCQAYNEYDS 109 (311)
T ss_dssp HHHHHHHHHHHSHHHHGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHSC--CCSTTHHH-HHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHcCCchhHHhcCCCCcccCCChHHHcCCCCCHHHHHHHH--hcccCCHH-HHHHHHHHHHHHHHHccCCCC
Confidence 3445555544 247999999999999999999999999999999999 5555 788 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 006378 362 SESAAAVELRQIVLKAMTRN 381 (647)
Q Consensus 362 ~~~kaA~eLrklv~K~m~k~ 381 (647)
.+|.+|..|+++|.++|.+.
T Consensus 110 ~i~~~A~~l~~~~~~~~~k~ 129 (311)
T 2r0y_A 110 LIVKNSMQVVMLIEFEVLKA 129 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999998753
No 41
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.68 E-value=9.6e-17 Score=150.90 Aligned_cols=98 Identities=17% Similarity=0.283 Sum_probs=90.1
Q ss_pred chhHHHHHHHHHhCc------cCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhh
Q 006378 282 SRPLVECIEIIRSHK------FGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIV 355 (647)
Q Consensus 282 sq~L~~ILd~L~shk------~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~v 355 (647)
...|..||+.|++|. .+.+|.+..+.. |+||. ++||||.+|++||+.|.|.++. +|..||.|||+||..
T Consensus 9 q~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~--pdYY~--k~Pi~l~~Ikkri~~~~Y~sld-~f~~D~~lmf~NAr~ 83 (147)
T 3iu6_A 9 QELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD--PNFPN--KPPLTFDIIRKNVENNRYRRLD-LFQEHMFEVLERARR 83 (147)
T ss_dssp HHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC--TTSTT--SCCCCHHHHHHHHHTTCCCCHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC--ccccC--CCCcCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHH
Confidence 467889999999986 678899888876 78998 9999999999999999999999 999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHhhcCC
Q 006378 356 FFDKNSSESAAAVELRQIVLKAMTRNTFD 384 (647)
Q Consensus 356 YN~~~S~~~kaA~eLrklv~K~m~k~l~k 384 (647)
||.++|.+|..|..|+++|.+.+++....
T Consensus 84 yN~e~S~IyeDAv~Lq~~f~~~r~eL~~~ 112 (147)
T 3iu6_A 84 MNRTDSEIYEDAVELQQFFIKIRDELCKN 112 (147)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999886643
No 42
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.50 E-value=2.4e-14 Score=138.63 Aligned_cols=89 Identities=16% Similarity=0.196 Sum_probs=81.6
Q ss_pred HHHHHHHHHhCccCCccccCCCCCCCCchhhhhcCCCCHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHhhhhcCCCCHHH
Q 006378 285 LVECIEIIRSHKFGSFFERLDATKETPDYRSIVRQHTDLETIRTRLEENWYSGSNSSFFHDLLLLFNNVIVFFDKNSSES 364 (647)
Q Consensus 285 L~~ILd~L~shk~a~~F~~PVd~qe~PDYy~IIkrPMDL~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA~vYN~~~S~~~ 364 (647)
|..||+.|..|+.+|+|.... ++.||||.||++||+.|.|.++. +|..||.|||.||+.||..++.+.
T Consensus 80 l~~vl~~L~~~~~s~~~~~y~-----------~k~PmDL~~i~kKl~~~~Y~s~~-eF~~Dv~lIf~n~~~~~~~~~e~~ 147 (183)
T 3lqh_A 80 LKQVLTALLNSRTTSHLLRYR-----------QQQPLDLEGVKRKMDQGNYTSVL-EFSDDIVKIIQAAINSDGGQPEIK 147 (183)
T ss_dssp HHHHHHHHHTCHHHHHHHTCC-----------C--CCSHHHHHHHHHTTCCCCHH-HHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHhccccHhhhhhh-----------hcCCccHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHhhccCCChhhh
Confidence 788999999999999998842 59999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCC
Q 006378 365 AAAVELRQIVLKAMTRNTFDP 385 (647)
Q Consensus 365 kaA~eLrklv~K~m~k~l~k~ 385 (647)
.++..|+.+|.+.|.+++.--
T Consensus 148 ~ag~~l~~~f~~~l~~vfpwf 168 (183)
T 3lqh_A 148 KANSMVKSFFIRQMERVFPWF 168 (183)
T ss_dssp HHHHHHHHHHHHHHHHHCTTS
T ss_pred hhhhHHHHHHHHHHHHHCCCC
Confidence 999999999999999998543
No 43
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=97.66 E-value=5.6e-05 Score=60.21 Aligned_cols=46 Identities=35% Similarity=0.652 Sum_probs=41.2
Q ss_pred CcccchhHHHHHHHHHhhccCCChhHHHHHHh-hhcCCCCCCCHHHHHHHHHHH
Q 006378 11 KQAWGTKEELLLACAVHRYGTQNWISVATEVQ-KRSSKFQLLTPLSCQQKYNDL 63 (647)
Q Consensus 11 ~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~-~r~~~~~~~t~~~C~~k~~~L 63 (647)
...|..-|+.+|.-||..||..+|..||..|. .|+ +..|+.+|..+
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt-------~~qcr~r~~~~ 55 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGNWADIADYVGNART-------KEECRDHYLKT 55 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCC-------HHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCC-------HHHHHHHHHHH
Confidence 56799999999999999999999999999997 676 49999999754
No 44
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.57 E-value=0.0001 Score=58.86 Aligned_cols=48 Identities=27% Similarity=0.549 Sum_probs=42.3
Q ss_pred CCCcccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 006378 9 PEKQAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYNDL 63 (647)
Q Consensus 9 ~~~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L 63 (647)
-....|..-|+.+|.-||..||..+|..||..|..|++ ..|+.+|..+
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~-------~qcr~r~~~~ 53 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTK-------EECEKHYMKY 53 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCH-------HHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCH-------HHHHHHHHHH
Confidence 34567999999999999999999999999999977764 9999999754
No 45
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=97.47 E-value=9.2e-05 Score=62.85 Aligned_cols=53 Identities=26% Similarity=0.475 Sum_probs=45.3
Q ss_pred CCCCCCCCCcccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 006378 3 NPSNNFPEKQAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYNDL 63 (647)
Q Consensus 3 ~~~~~~~~~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L 63 (647)
.|-+.......|..-|+++|.-||..|| .+|..||..|..|++ ..|+.+|..|
T Consensus 10 ~~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT~-------~qcr~r~~~~ 62 (79)
T 2yus_A 10 AKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQ-------DECILHFLRL 62 (79)
T ss_dssp CCCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCCH-------HHHHHHHTTS
T ss_pred CCccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCH-------HHHHHHHHHh
Confidence 3445556678899999999999999999 999999999987775 9999999754
No 46
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=97.45 E-value=9.2e-05 Score=57.61 Aligned_cols=49 Identities=27% Similarity=0.531 Sum_probs=41.7
Q ss_pred cccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHHhh
Q 006378 12 QAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYNDLKR 65 (647)
Q Consensus 12 ~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L~r 65 (647)
..|..-|+.+|..+|..||+.+|..||..|. ....|+..|+.||..|.+
T Consensus 3 ~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~-----~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKYGEGNWSKILLHYK-----FNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCHHHHHHHSC-----CSSCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC-----CCCCCHHHHHHHHHHHHc
Confidence 4688889999999999999999999999875 112467999999998865
No 47
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=97.28 E-value=0.0002 Score=58.49 Aligned_cols=54 Identities=26% Similarity=0.581 Sum_probs=43.0
Q ss_pred CCCCCcccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHHhh
Q 006378 7 NFPEKQAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYNDLKR 65 (647)
Q Consensus 7 ~~~~~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L~r 65 (647)
+..-...|..-|+-+|.-+|.+||..+|..||..+- ....|+..|+.||+-|.+
T Consensus 7 ~~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~-----~~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 7 NITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYP-----FVNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSC-----CSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcC-----CCCCCHHHHHHHHHHHhc
Confidence 344567899999999999999999999999998742 113578999999998864
No 48
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=97.25 E-value=0.00019 Score=55.30 Aligned_cols=45 Identities=24% Similarity=0.594 Sum_probs=39.7
Q ss_pred cccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 006378 12 QAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYNDL 63 (647)
Q Consensus 12 ~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L 63 (647)
..|..-|+.+|..+|..||..+|..||..|..|+ +..|+.+|..+
T Consensus 4 ~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt-------~~qcr~Rw~~~ 48 (52)
T 1guu_A 4 TRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRT-------DVQCQHRWQKV 48 (52)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCC-------HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCC-------HHHHHHHHHHH
Confidence 5788889999999999999999999998876554 59999999865
No 49
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=97.21 E-value=0.00029 Score=55.87 Aligned_cols=49 Identities=24% Similarity=0.523 Sum_probs=42.1
Q ss_pred CCCCcccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 006378 8 FPEKQAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYNDL 63 (647)
Q Consensus 8 ~~~~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L 63 (647)
.-....|.--|+.+|.-+|..||+.+|..||..|..|+ +..|+.+|..+
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt-------~~qcr~Rw~~~ 53 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRT-------DQQCQYRWLRV 53 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSC-------HHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCC-------HHHHHHHHHHH
Confidence 34456899999999999999999999999999876555 59999999865
No 50
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=97.03 E-value=0.0007 Score=55.26 Aligned_cols=54 Identities=24% Similarity=0.467 Sum_probs=44.7
Q ss_pred CCCcccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHHhhhh
Q 006378 9 PEKQAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYNDLKRRF 67 (647)
Q Consensus 9 ~~~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L~rRf 67 (647)
-....|..-|+.+|..+|..||+.+|..||..|. +...|+..|+.||+.+.+.-
T Consensus 8 ~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-----~~~Rt~~qcr~Rw~~~l~p~ 61 (69)
T 1ity_A 8 RKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYK-----FNNRTSVMLKDRWRTMKKLK 61 (69)
T ss_dssp SSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSC-----CSSCCHHHHHHHHHHHHHTS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcC-----cCCCCHHHHHHHHHHHcCCC
Confidence 4456899999999999999999999999999875 11346799999999886653
No 51
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.98 E-value=0.0011 Score=54.56 Aligned_cols=57 Identities=14% Similarity=0.292 Sum_probs=48.5
Q ss_pred CCCCCCCcccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHHhhhhcC
Q 006378 5 SNNFPEKQAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYNDLKRRFSG 69 (647)
Q Consensus 5 ~~~~~~~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L~rRfs~ 69 (647)
+|.......|.--|+.+|.-+|..||. +|..||.-|..|+. ..|+.+|..+.++..-
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~Rt~-------~q~k~r~~~~l~~~~~ 59 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGSRTV-------LQVKSYARQYFKNKVK 59 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSCH-------HHHHHHHHHHHHHHSC
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCH-------HHHHHHHHHHHHHHHh
Confidence 344456678999999999999999999 99999999988875 9999999988777644
No 52
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=96.97 E-value=0.00038 Score=53.76 Aligned_cols=46 Identities=24% Similarity=0.619 Sum_probs=39.4
Q ss_pred CcccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 006378 11 KQAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYNDL 63 (647)
Q Consensus 11 ~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L 63 (647)
...|..-|+.+|.-+|..||..+|..||..|..| |+..|+.+|..+
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~R-------t~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGR-------IGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTC-------CHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCC-------CHHHHHHHHHHH
Confidence 3578888999999999999999999999877655 469999999753
No 53
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.94 E-value=0.00082 Score=54.92 Aligned_cols=47 Identities=23% Similarity=0.654 Sum_probs=41.1
Q ss_pred CCcccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 006378 10 EKQAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYNDL 63 (647)
Q Consensus 10 ~~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L 63 (647)
-...|.-=|+.+|..+|..||+.+|..||..|..|+ +..|+.||...
T Consensus 8 k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt-------~~qcr~Rw~~~ 54 (70)
T 2dim_A 8 KGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKS-------AKQCKARWYEW 54 (70)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCC-------HHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCC-------HHHHHHHHHHH
Confidence 346799999999999999999999999999887655 59999999864
No 54
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.59 E-value=0.003 Score=52.14 Aligned_cols=51 Identities=18% Similarity=0.363 Sum_probs=42.9
Q ss_pred CCCcccchhHHHHHHHHHhhccC-----CChhHHHHHHhhhcCCCCCCCHHHHHHHH-HHHhhh
Q 006378 9 PEKQAWGTKEELLLACAVHRYGT-----QNWISVATEVQKRSSKFQLLTPLSCQQKY-NDLKRR 66 (647)
Q Consensus 9 ~~~~~WgT~EELlLa~AV~Rhg~-----~~Wdsva~E~~~r~~~~~~~t~~~C~~k~-~~L~rR 66 (647)
.....|.-=|+.+|.-||..||. .+|..||..|..||. ..|+.+| ..|...
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~-------~qcr~r~~~~l~~~ 62 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTA-------KQVASQVQKYFIKL 62 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCH-------HHHHHHHHHHHGGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCH-------HHHHHHHHHHHHHH
Confidence 34567999999999999999997 889999999987775 9999999 445443
No 55
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=96.53 E-value=0.0024 Score=53.63 Aligned_cols=49 Identities=16% Similarity=0.242 Sum_probs=44.0
Q ss_pred CcccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHHhhhhc
Q 006378 11 KQAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYNDLKRRFS 68 (647)
Q Consensus 11 ~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L~rRfs 68 (647)
...|.--|+.+|.-+|..||.. |..||..| .|+. ..|+.+|.-|++.+.
T Consensus 23 k~~wT~EED~~L~~l~~~~G~k-W~~IA~~l-gRt~-------~q~knRw~~L~~~~~ 71 (73)
T 2llk_A 23 VGKYTPEEIEKLKELRIKHGND-WATIGAAL-GRSA-------SSVKDRCRLMKDTCN 71 (73)
T ss_dssp CCSSCHHHHHHHHHHHHHHSSC-HHHHHHHH-TSCH-------HHHHHHHHHCSCCCS
T ss_pred CCCCCHHHHHHHHHHHHHHCCC-HHHHHHHh-CCCH-------HHHHHHHHHHHHHcc
Confidence 4579888999999999999987 99999999 9886 999999999988654
No 56
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.30 E-value=0.0058 Score=49.31 Aligned_cols=48 Identities=25% Similarity=0.447 Sum_probs=41.6
Q ss_pred CcccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHHhhhh
Q 006378 11 KQAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYNDLKRRF 67 (647)
Q Consensus 11 ~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L~rRf 67 (647)
...|.--|+.+|..+|..||. .|..||. +-.|+ +..|+.+|..|-+.-
T Consensus 9 k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~gRt-------~~qcr~Rw~~~l~~~ 56 (66)
T 2din_A 9 KTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIGRT-------AAQCLEHYEFLLDKA 56 (66)
T ss_dssp CCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHSSC-------HHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccCcC-------HHHHHHHHHHHhChH
Confidence 457999999999999999999 9999999 76665 599999999886654
No 57
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=96.28 E-value=0.003 Score=56.92 Aligned_cols=55 Identities=22% Similarity=0.454 Sum_probs=44.0
Q ss_pred CCCCCCCCCCCcccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 006378 1 MDNPSNNFPEKQAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYNDL 63 (647)
Q Consensus 1 ~~~~~~~~~~~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L 63 (647)
|-.......-...|..-|+-+|..+|..||. +|..||..|-.|+ +..|+.||...
T Consensus 1 m~q~~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt-------~~qcr~Rw~~~ 55 (126)
T 3osg_A 1 MVQVNLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRN-------ARQCRDRWKNY 55 (126)
T ss_dssp -CCBC-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTCC-------HHHHHHHHHHH
T ss_pred CCccccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCC-------HHHHHHHHhhh
Confidence 3344445566778999999999999999999 9999998776655 59999999864
No 58
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=96.24 E-value=0.0036 Score=54.84 Aligned_cols=45 Identities=29% Similarity=0.693 Sum_probs=39.3
Q ss_pred cccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 006378 12 QAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYNDL 63 (647)
Q Consensus 12 ~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L 63 (647)
..|..=|+-+|.-+|..||..+|..||..|-.|+ +..|+.||...
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt-------~~qcr~Rw~~~ 46 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRN-------PRQCRERWNNY 46 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSC-------HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCC-------HHHHHHHHHHH
Confidence 4688889999999999999999999999887665 59999999753
No 59
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=96.21 E-value=0.0037 Score=53.68 Aligned_cols=53 Identities=23% Similarity=0.251 Sum_probs=42.5
Q ss_pred ccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHHhhhhc
Q 006378 13 AWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYNDLKRRFS 68 (647)
Q Consensus 13 ~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L~rRfs 68 (647)
.|..-|+-+|.-+|.+||.+.|..|+..-- ..+...|...|+.||+.|.++-+
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~---~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAF---DNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCHHHHHHHHC---TTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCcHHHHHhhc---cccCCCCHHHHHHHHHHHHHhcc
Confidence 588889999999999999999999998521 11123588999999999987443
No 60
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=95.16 E-value=0.00084 Score=57.81 Aligned_cols=53 Identities=23% Similarity=0.327 Sum_probs=46.4
Q ss_pred CCCcccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHHhhhhcC
Q 006378 9 PEKQAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYNDLKRRFSG 69 (647)
Q Consensus 9 ~~~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L~rRfs~ 69 (647)
.....|..-|+.+|.-+|..||. +|..||.-|..||. ..|+.+|..+.+|+.-
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~gRt~-------~q~k~r~~~~lrk~~l 66 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGSKTV-------SQCKNFYFNYKKRQNL 66 (89)
Confidence 34567888899999999999999 79999999988876 8999999998888754
No 61
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=95.97 E-value=0.0085 Score=52.47 Aligned_cols=50 Identities=20% Similarity=0.498 Sum_probs=44.2
Q ss_pred CcccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHHhhhhc
Q 006378 11 KQAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYNDLKRRFS 68 (647)
Q Consensus 11 ~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L~rRfs 68 (647)
...|.--|+.+|.-+|..||. .|..||..|..|++ ..|+.+|..|.++..
T Consensus 53 ~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~l~gRt~-------~~~k~rw~~l~r~~~ 102 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEYGP-KWNKISKFLKNRSD-------NNIRNRWMMIARHRA 102 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSCH-------HHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhCc-CHHHHHHHCCCCCH-------HHHHHHHHHHHhhHH
Confidence 467998999999999999997 79999998877765 999999999998853
No 62
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=95.88 E-value=0.0024 Score=53.61 Aligned_cols=52 Identities=23% Similarity=0.464 Sum_probs=43.7
Q ss_pred CCcccchhHHHHHHHHHhhcc---CCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHHhhhhc
Q 006378 10 EKQAWGTKEELLLACAVHRYG---TQNWISVATEVQKRSSKFQLLTPLSCQQKYNDLKRRFS 68 (647)
Q Consensus 10 ~~~~WgT~EELlLa~AV~Rhg---~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L~rRfs 68 (647)
....|.--|+.+|.-||..|| ...|..||..|-.| |+..|+.+|..|.+-++
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGR-------T~~qcr~Ry~~L~~d~~ 71 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSK-------SKEDCIARYKLLVSGPS 71 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSS-------CHHHHHHHHHHHHSSCC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCC-------CHHHHHHHHHHHHHccc
Confidence 456799999999999999999 46899999877555 56999999999987654
No 63
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=95.83 E-value=0.0041 Score=53.95 Aligned_cols=46 Identities=22% Similarity=0.603 Sum_probs=39.4
Q ss_pred CcccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 006378 11 KQAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYNDL 63 (647)
Q Consensus 11 ~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L 63 (647)
...|..=|+-+|.-+|..||..+|..||..|..| |+..|+.+|..+
T Consensus 4 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~R-------t~~qcr~Rw~~~ 49 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGR-------IGKQCRERWHNH 49 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTC-------CHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCC-------CHHHHHHHHHhc
Confidence 3568888999999999999999999999877555 569999999764
No 64
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=95.51 E-value=0.0054 Score=55.53 Aligned_cols=46 Identities=26% Similarity=0.511 Sum_probs=39.0
Q ss_pred CcccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 006378 11 KQAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYNDL 63 (647)
Q Consensus 11 ~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L 63 (647)
...|..=|+-+|.-+|..||+.+|..||..|..|+ +..|+.||...
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt-------~~qcr~Rw~~~ 47 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRS-------PKQCRERWFNH 47 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSC-------HHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCC-------HHHHHHHHhhc
Confidence 34688889999999999999999999998776555 69999999653
No 65
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=95.50 E-value=0.0098 Score=53.59 Aligned_cols=52 Identities=17% Similarity=0.490 Sum_probs=44.2
Q ss_pred CcccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHHhhhhcCC
Q 006378 11 KQAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYNDLKRRFSGN 70 (647)
Q Consensus 11 ~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L~rRfs~~ 70 (647)
...|.--|+.+|.-+|..|| ..|..||..|..|+ +..|+.||..|.+++.-.
T Consensus 62 ~~~WT~eEd~~L~~~v~~~G-~~W~~Ia~~l~gRt-------~~~~k~rw~~l~~k~~~p 113 (126)
T 3osg_A 62 HTPWTAEEDALLVQKIQEYG-RQWAIIAKFFPGRT-------DIHIKNRWVTISNKLGIP 113 (126)
T ss_dssp CSCCCHHHHHHHHHHHHHHC-SCHHHHHTTSTTCC-------HHHHHHHHHHHHHHTTC-
T ss_pred cccCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCC-------HHHHHHHHHHHHHhcCCC
Confidence 35799999999999999999 57999997666555 599999999999998654
No 66
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=95.26 E-value=0.015 Score=52.32 Aligned_cols=46 Identities=22% Similarity=0.607 Sum_probs=39.9
Q ss_pred CcccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 006378 11 KQAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYNDL 63 (647)
Q Consensus 11 ~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L 63 (647)
...|..-|+-+|.-+|..||..+|..||..|-.|+ +..|+.+|..+
T Consensus 27 k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt-------~~qcr~Rw~~~ 72 (128)
T 1h8a_C 27 KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRI-------GKQCRERWHNH 72 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCC-------HHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCc-------HHHHHHHHHHh
Confidence 46788889999999999999999999999876555 59999999863
No 67
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=95.25 E-value=0.016 Score=53.25 Aligned_cols=57 Identities=23% Similarity=0.269 Sum_probs=46.7
Q ss_pred CCCcccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHHhhhhc
Q 006378 9 PEKQAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYNDLKRRFS 68 (647)
Q Consensus 9 ~~~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L~rRfs 68 (647)
-....|..-|+-+|.-+|.+||.+.|..|+..+-. .+...|...|+.||+.|.+.-.
T Consensus 29 r~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~---~~~~RT~vdlKdRWrnllk~~~ 85 (122)
T 2roh_A 29 RIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFE---NVHHRTYVDLKDKWKTLVHTAS 85 (122)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHS---SSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhcc---ccCCCCHHHHHHHHHHHHhhcc
Confidence 34568999999999999999999999999986531 1234688999999999987543
No 68
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=95.16 E-value=0.02 Score=52.43 Aligned_cols=58 Identities=21% Similarity=0.214 Sum_probs=47.1
Q ss_pred CCCCcccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHHhhhhc
Q 006378 8 FPEKQAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYNDLKRRFS 68 (647)
Q Consensus 8 ~~~~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L~rRfs 68 (647)
.-....|..-|+-+|.-+|.+||.+.|..|+..+-. .+...|...|+.||+.|.+.-.
T Consensus 14 rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~---~f~~RT~v~lKdRWrnllk~~~ 71 (121)
T 2juh_A 14 RRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFD---NADHRTYVDLKDKWKTLVHTAS 71 (121)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCS---CCSSCCSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcc---ccCCCCHHHHHHHHHHHHhhhc
Confidence 445678999999999999999999999999988732 1123577999999999988543
No 69
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=95.15 E-value=0.013 Score=50.84 Aligned_cols=48 Identities=27% Similarity=0.522 Sum_probs=40.3
Q ss_pred CcccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHHhhh
Q 006378 11 KQAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYNDLKRR 66 (647)
Q Consensus 11 ~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L~rR 66 (647)
...|.--|+.+|.-+|..||. .|..||..|..| |+..|+.+|..|.+|
T Consensus 56 ~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~gR-------t~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 56 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLPGR-------TDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCTTC-------CHHHHHHHHHHHTC-
T ss_pred ccCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCC-------CHHHHHHHHHHHHhc
Confidence 457999999999999999996 799999766555 569999999998776
No 70
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=94.89 E-value=0.013 Score=52.51 Aligned_cols=59 Identities=19% Similarity=0.186 Sum_probs=46.5
Q ss_pred CCCcccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHHhhhhcCC
Q 006378 9 PEKQAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYNDLKRRFSGN 70 (647)
Q Consensus 9 ~~~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L~rRfs~~ 70 (647)
-....|..-|+-+|..+|.+||.+.|..|+..+- ..+...|...|+.||+.|.++-+-.
T Consensus 11 r~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~---~~f~~RT~v~lKdrWrnllk~~~~~ 69 (105)
T 2aje_A 11 RIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAF---EDADHRTYVDLKDKWKTLVHTAKIS 69 (105)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSS---SSTTCCCHHHHHHHHHHHHHTTTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhc---cccCCCCHHHHHHHHHHHHhhccCC
Confidence 3456899999999999999999999999986431 0112358999999999999866543
No 71
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=94.82 E-value=0.021 Score=50.00 Aligned_cols=51 Identities=25% Similarity=0.510 Sum_probs=43.1
Q ss_pred CCcccchhHHHHHHHHHhhcc---CCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHHhhhh
Q 006378 10 EKQAWGTKEELLLACAVHRYG---TQNWISVATEVQKRSSKFQLLTPLSCQQKYNDLKRRF 67 (647)
Q Consensus 10 ~~~~WgT~EELlLa~AV~Rhg---~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L~rRf 67 (647)
....|..-|+.+|.-||..|| ...|..||..|-.|| +..|+.+|..|....
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT-------~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRT-------PEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCC-------HHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCC-------HHHHHHHHHHHHHHH
Confidence 456799999999999999998 466999999886666 599999999997654
No 72
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=94.72 E-value=0.032 Score=56.16 Aligned_cols=57 Identities=23% Similarity=0.493 Sum_probs=50.1
Q ss_pred CCCCCCCCCcccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHHhhhh
Q 006378 3 NPSNNFPEKQAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYNDLKRRF 67 (647)
Q Consensus 3 ~~~~~~~~~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L~rRf 67 (647)
.|+........|..-|.+++.-|+..|| .+|..||.-|.+||. ..|+..|..-++||
T Consensus 125 ~pe~~~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgTKT~-------~QcKnfY~~~kKRl 181 (235)
T 2iw5_B 125 LPEVIQKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSV-------VQVKNFFVNYRRRF 181 (235)
T ss_dssp CCCCCCCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCH-------HHHHHHHHHTTTTT
T ss_pred CCCCCCccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCH-------HHHHHHHHHHHHHh
Confidence 3555666788999999999999999999 589999999988875 99999999888888
No 73
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=94.08 E-value=0.012 Score=54.71 Aligned_cols=46 Identities=26% Similarity=0.594 Sum_probs=7.0
Q ss_pred CCcccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHH
Q 006378 10 EKQAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYND 62 (647)
Q Consensus 10 ~~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~ 62 (647)
....|..=|+-+|.-+|..||+.+|..||..|-.|++ ..|+.+|..
T Consensus 5 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~-------~qcr~Rw~~ 50 (159)
T 1h89_C 5 GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTD-------VQCQHRWQK 50 (159)
T ss_dssp ---------------------------------------------CHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCH-------HHHHHHHHH
Confidence 3456888899999999999999999999999877765 899999975
No 74
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=94.06 E-value=0.042 Score=46.42 Aligned_cols=54 Identities=31% Similarity=0.484 Sum_probs=44.2
Q ss_pred CCcccchhHHHHHHHHHhhccC---CChhHHHHHHhhhcCCCCCCCHHHHHHHHHHHhhhhcCC
Q 006378 10 EKQAWGTKEELLLACAVHRYGT---QNWISVATEVQKRSSKFQLLTPLSCQQKYNDLKRRFSGN 70 (647)
Q Consensus 10 ~~~~WgT~EELlLa~AV~Rhg~---~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L~rRfs~~ 70 (647)
....|.--|+.+|-.|+.-++. ..|+.||.-|-.|++ +.|+.+|..|++=|..+
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~-------eE~~~hY~~l~~~~~s~ 63 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSP-------EECQRKYMENPRGKGSQ 63 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCH-------HHHHHHHHHSSSSSCCC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCH-------HHHHHHHHHHHhccccc
Confidence 3457999999999888876654 569999988877764 99999999998877655
No 75
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=93.88 E-value=0.041 Score=51.03 Aligned_cols=47 Identities=21% Similarity=0.563 Sum_probs=40.5
Q ss_pred CCcccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 006378 10 EKQAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYNDL 63 (647)
Q Consensus 10 ~~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L 63 (647)
....|..-|+-+|.-+|..||..+|..||..|..|+ +..|+.+|..+
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt-------~~qcr~Rw~~~ 103 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRI-------GKQCRERWHNH 103 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCC-------HHHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCC-------HHHHHHHHHHH
Confidence 356899999999999999999999999998776554 59999999764
No 76
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=93.84 E-value=0.027 Score=50.62 Aligned_cols=48 Identities=25% Similarity=0.522 Sum_probs=41.1
Q ss_pred CcccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHHhhh
Q 006378 11 KQAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYNDLKRR 66 (647)
Q Consensus 11 ~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L~rR 66 (647)
...|..-|+.+|.-+|..||. .|..||..|..|+ +..|+.+|..|.+|
T Consensus 79 ~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~l~gRt-------~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 79 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLPGRT-------DNAVKNHWNSTMRR 126 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHHCS-CHHHHGGGSTTCC-------HHHHHHHHHTTTTC
T ss_pred cccCCHHHHHHHHHHHHHHCc-CHHHHHHHCCCCC-------HHHHHHHHHHHHhc
Confidence 467998999999999999996 7999997665555 59999999988765
No 77
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=93.30 E-value=0.12 Score=43.20 Aligned_cols=51 Identities=18% Similarity=0.335 Sum_probs=42.9
Q ss_pred CCCcccchhHHHHHHHHHhhccC---CChhHHHHHHhhhcCCCCCCCHHHHHHHHHHHhhhh
Q 006378 9 PEKQAWGTKEELLLACAVHRYGT---QNWISVATEVQKRSSKFQLLTPLSCQQKYNDLKRRF 67 (647)
Q Consensus 9 ~~~~~WgT~EELlLa~AV~Rhg~---~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L~rRf 67 (647)
.....|..=|.-+|..||..|+- ..|..||.-| -| |+..|+.+|..|+.-+
T Consensus 6 ~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gR-------t~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 6 SGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GR-------SVTDVTTKAKQLKDSV 59 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TS-------CHHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CC-------CHHHHHHHHHHHHHhc
Confidence 34557999999999999999983 5599999998 45 5699999999998875
No 78
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=93.07 E-value=0.051 Score=49.11 Aligned_cols=51 Identities=22% Similarity=0.444 Sum_probs=40.8
Q ss_pred cccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHHh-hhhcCC
Q 006378 12 QAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYNDLK-RRFSGN 70 (647)
Q Consensus 12 ~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L~-rRfs~~ 70 (647)
..|.--|+.+|..+|..||. .|..||..|..|+ ...|+.+|..+- +++...
T Consensus 55 ~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~gRt-------~~~~k~rw~~~l~~~~~~~ 106 (131)
T 3zqc_A 55 HAWTPEEDETIFRNYLKLGS-KWSVIAKLIPGRT-------DNAIKNRWNSSISKRISTN 106 (131)
T ss_dssp SCCCHHHHHHHHHHHHHSCS-CHHHHTTTSTTCC-------HHHHHHHHHHTTGGGCCCC
T ss_pred CCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCC-------HHHHHHHHHHHHHHHhhcC
Confidence 47988899999999999995 7999997666555 599999997654 555443
No 79
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.00 E-value=0.12 Score=41.36 Aligned_cols=50 Identities=16% Similarity=0.218 Sum_probs=42.0
Q ss_pred CCCCcccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHHhh
Q 006378 8 FPEKQAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYNDLKR 65 (647)
Q Consensus 8 ~~~~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L~r 65 (647)
-.....|..-|.-|+..|+..|| .+|..||.-|..|++ ..|...|-.-++
T Consensus 9 r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~rt~-------~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 9 RQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLERKSV-------PDCVLYYYLTKK 58 (61)
T ss_dssp CSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTTSCH-------HHHHHHHHHHTC
T ss_pred cccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCH-------HHHHHHHHHhcC
Confidence 45678899999999999999999 699999988777665 889999876544
No 80
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=92.83 E-value=0.1 Score=44.01 Aligned_cols=58 Identities=16% Similarity=0.353 Sum_probs=45.1
Q ss_pred CcccchhHHHHHHHHHhhccC---------CChhHHHHHHhhhcCCCCCCCHHHHHHHHHHHhhhhcCCC
Q 006378 11 KQAWGTKEELLLACAVHRYGT---------QNWISVATEVQKRSSKFQLLTPLSCQQKYNDLKRRFSGND 71 (647)
Q Consensus 11 ~~~WgT~EELlLa~AV~Rhg~---------~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L~rRfs~~~ 71 (647)
...|+-=|=++|..+..=|-. .-|..||..|+..-- ..|+.-|+.||..|+++|-...
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~---~rs~~qC~~K~~nL~k~Yk~~k 70 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGF---DRSPDMCTDKWRNLLKEFKKAK 70 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHCSCS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHHHHHHH
Confidence 356888777777777643222 279999999997763 5799999999999999997754
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=88.66 E-value=0.41 Score=52.71 Aligned_cols=56 Identities=23% Similarity=0.509 Sum_probs=47.6
Q ss_pred CCCCCCCCcccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHHhhhh
Q 006378 4 PSNNFPEKQAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYNDLKRRF 67 (647)
Q Consensus 4 ~~~~~~~~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L~rRf 67 (647)
|+........|..=|-+|+.-||..||- +|..||.=|.+|++ .-|+.-|..-++||
T Consensus 373 ~e~~~~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~VgTKT~-------~Qvk~fy~~~kkr~ 428 (482)
T 2xag_B 373 PEVIQKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIGNKSV-------VQVKNFFVNYRRRF 428 (482)
T ss_dssp CCCCCCCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHSSCCH-------HHHHHHHHHTTTTT
T ss_pred CccccccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhCCCCH-------HHHHHHHHHHHHHh
Confidence 3444556789999999999999999996 99999999988875 99999998777777
No 82
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=78.26 E-value=6.3 Score=32.41 Aligned_cols=58 Identities=17% Similarity=0.182 Sum_probs=46.5
Q ss_pred CCCCCcccchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHHhhhhcC
Q 006378 7 NFPEKQAWGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYNDLKRRFSG 69 (647)
Q Consensus 7 ~~~~~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L~rRfs~ 69 (647)
.......|..-|+=+|.-.|..||- .|..|+..- |.+...|...=+.||+.|.++=+.
T Consensus 4 ~~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y----~f~~~RT~VdLKdk~r~L~k~~~~ 61 (62)
T 1x58_A 4 GSSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSF----PFQKGRRAVDLAHKYHRLISGPSS 61 (62)
T ss_dssp CCCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHS----CCCTTCCHHHHHHHHHHHHTCSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhC----CCccCcccchHHHHHHHHHhcccC
Confidence 4557788999999999999999998 999999653 212235889999999999987543
No 83
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=78.03 E-value=1.9 Score=41.23 Aligned_cols=30 Identities=20% Similarity=0.573 Sum_probs=24.8
Q ss_pred CcccchhHHHHHHHHHhhccCCChhHHHHH
Q 006378 11 KQAWGTKEELLLACAVHRYGTQNWISVATE 40 (647)
Q Consensus 11 ~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E 40 (647)
...|+-=++-.|.+.|.+||+++|+.|-..
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D 163 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMD 163 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence 345666699999999999999999977654
No 84
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=73.91 E-value=1.2 Score=45.12 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=40.1
Q ss_pred CcccchhHHHHHHHHHhhccCCC-----hhHHHHHHhhhcCCCCCCCHHHHHHHHHH-Hhhh
Q 006378 11 KQAWGTKEELLLACAVHRYGTQN-----WISVATEVQKRSSKFQLLTPLSCQQKYND-LKRR 66 (647)
Q Consensus 11 ~~~WgT~EELlLa~AV~Rhg~~~-----Wdsva~E~~~r~~~~~~~t~~~C~~k~~~-L~rR 66 (647)
...|.--|+.+|.-+|.+||... |..||.-|--| |...||.+|+- |+.|
T Consensus 8 k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGR-------T~nsIRnRw~~~L~~~ 62 (246)
T 1ign_A 8 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNH-------TGNSIRHRFRVYLSKR 62 (246)
T ss_dssp CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTS-------CHHHHHHHHHHTTGGG
T ss_pred CCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCC-------CHHHHHHHHHHHHhhh
Confidence 35788899999999999999975 99999655444 56999999998 5544
No 85
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=63.19 E-value=3.9 Score=41.85 Aligned_cols=29 Identities=24% Similarity=0.636 Sum_probs=25.3
Q ss_pred cccchhHHHHHHHHHhhccCCChhHHHHH
Q 006378 12 QAWGTKEELLLACAVHRYGTQNWISVATE 40 (647)
Q Consensus 12 ~~WgT~EELlLa~AV~Rhg~~~Wdsva~E 40 (647)
..|+.-++-.|..-|.+||+++|..|-+.
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~D 197 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRDD 197 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhcC
Confidence 45888899999999999999999998763
No 86
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.33 E-value=7.3 Score=31.29 Aligned_cols=47 Identities=17% Similarity=0.366 Sum_probs=38.3
Q ss_pred CcccchhHHHHHHHHHhhccCCChhHHHHH-HhhhcCCCCCCCHHHHHHHHHHHhh
Q 006378 11 KQAWGTKEELLLACAVHRYGTQNWISVATE-VQKRSSKFQLLTPLSCQQKYNDLKR 65 (647)
Q Consensus 11 ~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E-~~~r~~~~~~~t~~~C~~k~~~L~r 65 (647)
...|..=|-.+.-.|+..||- +|..|+.+ |..|++ ..|..-|-.-+.
T Consensus 9 ~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~-------~~~v~fYY~wKk 56 (63)
T 2yqk_A 9 EKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPNKET-------GELITFYYYWKK 56 (63)
T ss_dssp CCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTTSCH-------HHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCcH-------HHHHHHHhcccC
Confidence 357988888899999999999 89999986 666664 899888865544
No 87
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=46.19 E-value=24 Score=36.72 Aligned_cols=35 Identities=14% Similarity=0.419 Sum_probs=31.1
Q ss_pred CCcccchhHHHHHHHHHhhccC---CChhHHHHHHhhh
Q 006378 10 EKQAWGTKEELLLACAVHRYGT---QNWISVATEVQKR 44 (647)
Q Consensus 10 ~~~~WgT~EELlLa~AV~Rhg~---~~Wdsva~E~~~r 44 (647)
-+-.|.--|.=+|.|.|.+||. ++|+.|-.+++.-
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~ 248 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRAS 248 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHC
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhC
Confidence 4567988999999999999999 9999999998753
No 88
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=43.33 E-value=40 Score=36.17 Aligned_cols=35 Identities=17% Similarity=0.402 Sum_probs=31.3
Q ss_pred CCcccchhHHHHHHHHHhhccC---CChhHHHHHHhhh
Q 006378 10 EKQAWGTKEELLLACAVHRYGT---QNWISVATEVQKR 44 (647)
Q Consensus 10 ~~~~WgT~EELlLa~AV~Rhg~---~~Wdsva~E~~~r 44 (647)
.+-.|.--|+=+|.|.|.+||. +.|+.|-.+++.-
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~ 264 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDC 264 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhC
Confidence 4568999999999999999999 9999999998753
No 89
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=41.31 E-value=12 Score=38.89 Aligned_cols=49 Identities=16% Similarity=0.291 Sum_probs=39.4
Q ss_pred cchhHHHHHHHHHhhccCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHHHhhhhcC
Q 006378 14 WGTKEELLLACAVHRYGTQNWISVATEVQKRSSKFQLLTPLSCQQKYNDLKRRFSG 69 (647)
Q Consensus 14 WgT~EELlLa~AV~Rhg~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~L~rRfs~ 69 (647)
|.--+-..+..|+.+||-.+|+.||+||-..+ ++.-+.=|..|-.||..
T Consensus 113 W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt-------~eEV~~Y~~vFw~ry~e 161 (304)
T 1ofc_X 113 WTKRDFNQFIKANEKYGRDDIDNIAKDVEGKT-------PEEVIEYNAVFWERCTE 161 (304)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCC-------HHHHHHHHHHHHHHGGG
T ss_pred cCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHhHHH
Confidence 43337778889999999999999999996544 56668888999999943
No 90
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=39.93 E-value=32 Score=28.18 Aligned_cols=49 Identities=20% Similarity=0.373 Sum_probs=38.5
Q ss_pred CCCcccchhHHHHHHHHHhhccCCChhHHHHH-HhhhcCCCCCCCHHHHHHHHHHHhh
Q 006378 9 PEKQAWGTKEELLLACAVHRYGTQNWISVATE-VQKRSSKFQLLTPLSCQQKYNDLKR 65 (647)
Q Consensus 9 ~~~~~WgT~EELlLa~AV~Rhg~~~Wdsva~E-~~~r~~~~~~~t~~~C~~k~~~L~r 65 (647)
+.-..|.--|--+.-.|+..||- +|..|+.+ |.+|+ +..|..-|-.-++
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt-------~~~~v~fYY~wKk 55 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYGK-DFNDIRQDFLPWKS-------LTSIIEYYYMWKT 55 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSC-------HHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCC-------HHHHHHHHHhhcC
Confidence 45567888888888999999999 89999975 55555 5899988875544
No 91
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=36.66 E-value=15 Score=29.29 Aligned_cols=44 Identities=14% Similarity=0.235 Sum_probs=32.3
Q ss_pred ccchhHHHHHHHHHhhc--------cCCChhHHHHHHhhhcCCCCCCCHHHHHHHHHH
Q 006378 13 AWGTKEELLLACAVHRY--------GTQNWISVATEVQKRSSKFQLLTPLSCQQKYND 62 (647)
Q Consensus 13 ~WgT~EELlLa~AV~Rh--------g~~~Wdsva~E~~~r~~~~~~~t~~~C~~k~~~ 62 (647)
.+.-=|+.+|.+-|..| |..-|..+|.+. . .--|-++||.||..
T Consensus 4 ~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~---~---~~HtwqSwRdRy~k 55 (59)
T 1fex_A 4 AFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSS---L---TQHSWQSLKDRYLK 55 (59)
T ss_dssp CCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSC---S---SSCCSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhH---C---CCCCHHHHHHHHHH
Confidence 34445889999999999 888898887621 1 12367999999964
No 92
>3si5_X Protein CASC5; BUBR1-blinkin complex, mitotic checkpoint, BUBR1, blinkin/KN chromosome segregation, cell cycle; 2.20A {Homo sapiens}
Probab=35.78 E-value=15 Score=25.07 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=14.6
Q ss_pred hhhhhhcHHHHHHHhhcC
Q 006378 532 VNAKKRSAEIFLSRITRS 549 (647)
Q Consensus 532 ~~~KKr~a~dFLkR~k~n 549 (647)
...||.|--||+||+|-.
T Consensus 6 ssekKinfndFIKRLK~g 23 (24)
T 3si5_X 6 SSENKIDFNDFIKRLKTG 23 (26)
T ss_pred chhhhccHHHHHHHHhcC
Confidence 346888999999999853
No 93
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=35.05 E-value=31 Score=29.66 Aligned_cols=30 Identities=13% Similarity=0.240 Sum_probs=26.1
Q ss_pred HHHHHHHHhcCCcCCcHHHHHHHHHHHHHHh
Q 006378 323 LETIRTRLEENWYSGSNSSFFHDLLLLFNNV 353 (647)
Q Consensus 323 L~TIrsKLesg~Y~S~~~EF~rDLlLmf~NA 353 (647)
..-|...|.+|.|.|.+ |.++|.+.++..-
T Consensus 15 ~~~i~~~V~sG~Y~s~S-EviR~~lR~l~~r 44 (88)
T 3kxe_C 15 QAFIDSQVADGRYGSAS-EVIRAGLRLLEEN 44 (88)
T ss_dssp HHHHHHHHTTTSCSSHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHH-HHHHHHHHHHHHH
Confidence 45789999999999999 9999988888653
No 94
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=34.99 E-value=18 Score=28.93 Aligned_cols=34 Identities=32% Similarity=0.241 Sum_probs=26.7
Q ss_pred HHHhHHHHHHHHHhhhccch-hhHHHHHHHHHHHh
Q 006378 90 LKKLRVAELKRELQLFDISI-VSLQLKVERLIEER 123 (647)
Q Consensus 90 LRklRvaeLrreve~~d~sI-~sLq~kvk~L~~er 123 (647)
|-++.|+|||.++....+++ |.=+.=|+||.+--
T Consensus 10 l~klkV~eLK~~L~~rGL~~~G~KaeLieRL~~~l 44 (55)
T 2do1_A 10 LHKLKLAELKQECLARGLETKGIKQDLIHRLQAYL 44 (55)
T ss_dssp TTTSCHHHHHHHHHHHTCCCCSCHHHHHHHHHHHH
T ss_pred HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH
Confidence 66899999999999999886 44445677777653
No 95
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=34.72 E-value=28 Score=27.31 Aligned_cols=35 Identities=29% Similarity=0.300 Sum_probs=27.7
Q ss_pred HHHhHHHHHHHHHhhhccch-hhHHHHHHHHHHHhc
Q 006378 90 LKKLRVAELKRELQLFDISI-VSLQLKVERLIEERE 124 (647)
Q Consensus 90 LRklRvaeLrreve~~d~sI-~sLq~kvk~L~~er~ 124 (647)
|-++.|+|||.++....+++ |.=+.=|+||.+.-+
T Consensus 10 ~~klkV~eLK~eLk~RgL~~~G~Ka~Li~RL~~~~~ 45 (50)
T 1zrj_A 10 VRRLKVNELREELQRRGLDTRGLKAELAERLQAALS 45 (50)
T ss_dssp GGGSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHC
T ss_pred HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHh
Confidence 56899999999999999986 444556788877643
No 96
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=31.10 E-value=46 Score=27.72 Aligned_cols=32 Identities=28% Similarity=0.344 Sum_probs=28.3
Q ss_pred HHHHhHHHHHHHHHhhhccchhhHHHHHHHHH
Q 006378 89 QLKKLRVAELKRELQLFDISIVSLQLKVERLI 120 (647)
Q Consensus 89 eLRklRvaeLrreve~~d~sI~sLq~kvk~L~ 120 (647)
..+.+|+.||..+|+..|.-|+.|+..+.++.
T Consensus 21 ~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 21 MLKEERIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999999999999988763
No 97
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=27.68 E-value=27 Score=29.68 Aligned_cols=37 Identities=32% Similarity=0.458 Sum_probs=29.7
Q ss_pred HHHHhHHHHHHHHHhhhccch-hhHHHHHHHHHHHhcc
Q 006378 89 QLKKLRVAELKRELQLFDISI-VSLQLKVERLIEEREG 125 (647)
Q Consensus 89 eLRklRvaeLrreve~~d~sI-~sLq~kvk~L~~er~~ 125 (647)
.|-++.|+|||.+|....+++ |.=+.=|+||.+.-+.
T Consensus 25 ~l~klkVaeLK~eLk~RGL~~sG~KaeLIeRL~~~~~~ 62 (75)
T 2kvu_A 25 NLDDMKVAELKQELKLRSLPVSGTKTELIERLRAYQDQ 62 (75)
T ss_dssp TTTTSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHT
T ss_pred HHHHCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 567899999999999999987 4555578899877443
No 98
>1yyb_A Programmed cell death protein 5; PDCD5(1-26), solution structure, apoptosis; NMR {Homo sapiens} SCOP: j.121.1.1
Probab=26.65 E-value=38 Score=23.44 Aligned_cols=17 Identities=35% Similarity=0.552 Sum_probs=14.2
Q ss_pred chHHHHHHhHHHHHHHH
Q 006378 85 PWLDQLKKLRVAELKRE 101 (647)
Q Consensus 85 ~w~eeLRklRvaeLrre 101 (647)
+=|+.||..||++|...
T Consensus 5 ~ELeair~~rl~~lq~~ 21 (27)
T 1yyb_A 5 EELEALRRQRLAELQAK 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 34899999999999764
No 99
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=21.99 E-value=52 Score=25.84 Aligned_cols=36 Identities=31% Similarity=0.339 Sum_probs=28.2
Q ss_pred HHHHhHHHHHHHHHhhhccch-hhHHHHHHHHHHHhc
Q 006378 89 QLKKLRVAELKRELQLFDISI-VSLQLKVERLIEERE 124 (647)
Q Consensus 89 eLRklRvaeLrreve~~d~sI-~sLq~kvk~L~~er~ 124 (647)
.|-++.|+|||.++....+++ |.=..=|+||.+.-+
T Consensus 4 ~~~kltV~eLK~~Lk~RGL~~~G~KadLieRL~~~~~ 40 (51)
T 1h1j_S 4 DYSSLTVVQLKDLLTKRNLSVGGLKNELVQRLIKDDE 40 (51)
T ss_dssp SGGGCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHH
T ss_pred hHHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHH
Confidence 466899999999999999986 444557888877643
Done!