Query 006379
Match_columns 647
No_of_seqs 88 out of 90
Neff 3.9
Searched_HMMs 46136
Date Thu Mar 28 22:25:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006379.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006379hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09746 Membralin: Tumour-ass 100.0 9.9E-93 2.1E-97 743.7 22.1 356 4-438 14-375 (375)
2 KOG2092 Uncharacterized conser 100.0 9.2E-60 2E-64 481.1 0.9 368 236-628 1-374 (381)
3 KOG2092 Uncharacterized conser 100.0 4E-45 8.6E-50 373.9 6.1 303 5-408 55-381 (381)
4 KOG4438 Centromere-associated 37.8 47 0.001 37.7 4.8 42 6-47 385-431 (446)
5 COG4168 SapB ABC-type antimicr 35.6 2.7E+02 0.0058 30.3 9.6 113 377-505 76-213 (321)
6 PF11833 DUF3353: Protein of u 27.3 1.9E+02 0.0041 29.5 6.8 26 267-294 19-44 (194)
7 PF00317 Ribonuc_red_lgN: Ribo 26.3 59 0.0013 28.1 2.6 18 2-19 27-44 (83)
8 KOG4220 Muscarinic acetylcholi 25.8 1.1E+03 0.024 27.5 13.0 124 452-581 184-313 (503)
9 PF12679 ABC2_membrane_2: ABC- 24.6 7E+02 0.015 24.7 10.9 28 397-424 172-199 (277)
10 PF04021 Class_IIIsignal: Clas 22.8 1.2E+02 0.0027 22.0 3.3 24 21-44 2-25 (28)
No 1
>PF09746 Membralin: Tumour-associated protein; InterPro: IPR019144 Membralin is evolutionarily highly conserved, though it appears to represent a unique protein family. The protein appears to contain several transmembrane regions. In humans it is expressed in certain cancers, particularly ovarian cancers []. Membralin-like gene homologues have been identified in plants including grape, cotton and tomato [].
Probab=100.00 E-value=9.9e-93 Score=743.66 Aligned_cols=356 Identities=26% Similarity=0.456 Sum_probs=262.2
Q ss_pred cchhHHHHHHHhhhcCchhhhHHHHHHHHHHHHHHHHHHhhhhhcc-cCCCCcccccCcccCccceEEEEEeccCCCCCC
Q 006379 4 EHTFIRVQERFSRVLTPRVRAYLEYIYLFIAITLFCVLVVMHANYV-QQPGCSSEFAGIRMTEAQLIQIKISSAGLWSQN 82 (647)
Q Consensus 4 ~~~f~rv~~~~a~~~~~~VRr~iEyi~L~~AI~lF~iLvymH~nFv-qqp~Cl~~~~~~~wpr~gilrVeI~~~~~w~~~ 82 (647)
|-+|+|+|.+|||++||++||+|||++|+|||++||+|+|||++|+ +|.+|++|+++. |||+||+||||+|| +|..+
T Consensus 14 ha~f~r~a~~Yar~~p~~~Rr~iEf~~L~~Al~~~~iL~yIH~~F~rsp~tCL~~~~~~-wpR~GIlRveI~~n-~~~~~ 91 (375)
T PF09746_consen 14 HALFFRVALAYARLFPPPVRRFIEFIVLLKALFLFFILIYIHIAFSRSPITCLDHVKDD-WPRDGILRVEIVRN-LESKN 91 (375)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHhhcc-ccccceeEEEEecC-CCccc
Confidence 4589999999999999999999999999999999999999999999 778999999995 99999999999996 46666
Q ss_pred CCCCccccccccccchhhhhhhhhhccccccccCCcccccccCcCCCCCCCCcccccccccccccccccccChhhhhhhh
Q 006379 83 DSDSNVVDVTSVDNAINELEVSGKLALKFWRTDMEPVEHLAEGSVSSQSFKPTDSAVNKIDKEEARNSFALSAKEAFKSA 162 (647)
Q Consensus 83 ~~~s~~~d~~~~~~~~~~lei~~~l~~~f~k~~~~~~e~~~~~~t~~~~s~~~~d~~~~~~~ee~~~~~~~s~kE~~ka~ 162 (647)
+..++. +++++.+...+.. ..+++.... .++.+ .+..+....+.. . ..
T Consensus 92 i~~~~~-~ee~L~r~~qep~-----s~siEpsTt--------eeelt--~el~~~~s~kl~---~--~~----------- 139 (375)
T PF09746_consen 92 IFQQYY-DEESLLRNVQEPG-----SYSIEPSTT--------EEELT--TELFQNSSIKLE---S--DL----------- 139 (375)
T ss_pred hhhhhh-hhcchhhhhcccc-----ccCcCcccc--------chhhh--Hhhhhccccccc---c--cc-----------
Confidence 644433 3334444332221 111111110 00000 000000000000 0 00
Q ss_pred hhccccccccchhHHHHHHHHHHHHHHhhhhhcccccccCccchhhccccccchhhhhhHhhhccccCCCeEEEecccee
Q 006379 163 IIHFGKKWYRRLSFVWRQAMQILRNFQKLWNIAGIHLNLDVPKLMHLLYLDRIHSYAVQWLENRTKAFEPTYLYTMEKGY 242 (647)
Q Consensus 163 v~~~~~k~~~~~S~~~~~~~~i~~~~~klw~~~g~~~~ld~pk~~~~~~~d~l~s~~V~~~e~~~k~~E~~yeYSlEyGf 242 (647)
-.+.++... +.....+..+.....|.+ + +.+-.++.....||+||||+||||
T Consensus 140 ---~~~~~~~~~------------~~~~~~d~~~~~~~~~~~------------~-~~~~~~~~~~~~~y~veYsleyG~ 191 (375)
T PF09746_consen 140 ---EPSFLSSDS------------SLNNTFDEDNISDTFDFE------------E-IMQLKNKVWPQDEYIVEYSLEYGF 191 (375)
T ss_pred ---cccccCCcc------------cccccccccccccccccc------------h-hhcccccCCcccceeEEeehhcch
Confidence 000000000 000000101111111111 0 011011222336899999999999
Q ss_pred eccCcccccccCceEEEEEeCC-CCCCCcchHHHHHHHhhcCchHHHHhhhh----ccCCceeEEecccCeEEeeccccC
Q 006379 243 FLLPEADKSRHNIRTFNISISA-QHPCFGNRWQQLLINRFVGYDTILMNSLL----HTPGQGYLYNCQTKEFYNLSYAQE 317 (647)
Q Consensus 243 LrLs~~aR~rhnIpt~~VtLd~-~~~CFGd~~~rlLL~~flGYDtILmNSlk----~~~gkGYLrN~~TgE~Y~l~~~~~ 317 (647)
||||+++|++|||||++|+||+ +|+||||+|+|++|++|+||||++|+|+| +++|||||||++|||||||+++|.
T Consensus 192 LrLs~~~r~~~nI~~~~v~ldp~~~~CfG~~~~r~ll~~f~GYd~~lm~s~k~la~~e~~~GyL~n~~t~e~y~fv~~~~ 271 (375)
T PF09746_consen 192 LRLSEATRQRHNIPVMVVTLDPAKDQCFGDRFSRLLLDEFLGYDDILMSSLKTLAENEDNKGYLRNVVTGEHYRFVSMWW 271 (375)
T ss_pred hcCCHHHHhhcCCeEEEEEECCCCCCccCchHHHHhhhhhcCccHHHHHHHHHHhcCCCCceeeeecccccceehhhhhh
Confidence 9999999999999999999995 99999999999999999999999999999 478999999999999999998863
Q ss_pred CCCCCcccchhHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhHHHHHHHHhhhhhccccchhHHHHHHHHHhhhhHhHh
Q 006379 318 PPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHAQHRLPTFQLIFVHVIESLVFVPIMI 397 (647)
Q Consensus 318 ~~~~~ar~~~ylv~k~~Vli~sLFvfF~fT~~VSflLR~Sq~rif~FiV~L~~~~r~~~P~a~Li~~hVi~sLVFVpvmI 397 (647)
. +| ++|++ ++|+|++||++|||||||||||||+||||++||++++.|++ .|++..|.+|++||
T Consensus 272 ~----~r-~sy~~--------a~~~m~~ft~svs~lLR~s~~qif~fiv~ll~~~~~~~~~~----~p~a~llt~il~lv 334 (375)
T PF09746_consen 272 M----AR-SSYLA--------AFFVMLIFTFSVSMLLRYSHHQIFVFIVDLLQMLEHNLPIF----FPAAPLLTVILALV 334 (375)
T ss_pred h----hc-cHHHH--------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCccc----cccceeeeeehhhH
Confidence 2 33 46664 77888999999999999999999999999999998887642 35666667788888
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHhhhhhceeeccccccc
Q 006379 398 GILFFLFEFYDDQLLAFLVLILVWLCELFTLISVRTPISMK 438 (647)
Q Consensus 398 Gm~afMsEFF~D~~lAFyViliVWladqf~aI~~RT~~Skr 438 (647)
||+|||+|||||+++||||||+||+|||||+|||||++|||
T Consensus 335 gm~~~m~eff~d~~~af~vil~vw~~d~~~~i~c~t~~~~r 375 (375)
T PF09746_consen 335 GMEAIMSEFFNDTTTAFYVILIVWLADQYDAICCHTPISKR 375 (375)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHhhccEEEecCccCCC
Confidence 99999999999999999999999999999999999999997
No 2
>KOG2092 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=9.2e-60 Score=481.08 Aligned_cols=368 Identities=57% Similarity=0.870 Sum_probs=320.4
Q ss_pred EeccceeeccCcccccccCceEEEEEeCCCCCCCcchHHHHHHHhhcCchHHHHhhhhccCCceeEEecccCeEEeeccc
Q 006379 236 YTMEKGYFLLPEADKSRHNIRTFNISISAQHPCFGNRWQQLLINRFVGYDTILMNSLLHTPGQGYLYNCQTKEFYNLSYA 315 (647)
Q Consensus 236 YSlEyGfLrLs~~aR~rhnIpt~~VtLd~~~~CFGd~~~rlLL~~flGYDtILmNSlk~~~gkGYLrN~~TgE~Y~l~~~ 315 (647)
|.+|+|+..+|++++-+||| +-++.++++++|||++|++++++.++||||+|++++.++-+.||.| .+|.|.-|
T Consensus 1 ~~~~~~~~~~P~~~~p~~N~-~~~~~~~ar~P~~pn~~q~~~~N~lv~~rdrlfhal~~~~a~~Ys~-~~~~~frr---- 74 (381)
T KOG2092|consen 1 YTMEKGYFLLPDEAKPRHNI-TANVSISARHPCFPNRWQQLLINRLVGYRDRLFHALQNSAAQGYSY-YQTREFRR---- 74 (381)
T ss_pred CchhhcccCCCCCCCCCCCC-CCCCCcccCCCCCCchhhhhcccccccHHHHHHHHHHHHHhhhhhh-ccCHHHHh----
Confidence 57899999999999999999 6899999999999999999999999999999999999999999999 88888744
Q ss_pred cCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhHHHHHHHHhhhhhccccchhHHHHHHHHHhhhhHh
Q 006379 316 QEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHAQHRLPTFQLIFVHVIESLVFVPI 395 (647)
Q Consensus 316 ~~~~~~~ar~~~ylv~k~~Vli~sLFvfF~fT~~VSflLR~Sq~rif~FiV~L~~~~r~~~P~a~Li~~hVi~sLVFVpv 395 (647)
-+++++-++.|++.||+++|+++|++ +++++++.||+++.||..|.|++++|..++.|++.++.+|++.++||+|+
T Consensus 75 --l~egs~lf~a~lvl~~l~~ihi~F~r--sp~scl~~~r~~w~R~gi~rVev~~H~s~r~p~Fl~f~~~~~~~~vF~~~ 150 (381)
T KOG2092|consen 75 --LPEGSALFGAYLVLKCLVLIHILFVR--SPMSCLFTLRETWTRMGIFRVEVQHHASHRLPTFLLFFVHVIESLVFVPI 150 (381)
T ss_pred --ccchHHHHHHHHHHHHHHHHHHHhhc--CchHHHHHHHhhhhhheeEEEEEEecchhcchHHHHHHhhhcccccccch
Confidence 46788889999999999999999987 78999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHhcccchhHHHHHHHHHHhhhhhceeeccccccchhhHHHH--HHHHHhhheeeeecccchhHHHHHHHHH
Q 006379 396 MIGILFFLFEFYDDQLLAFLVLILVWLCELFTLISVRTPISMKFFPRFFL--LYFLVFHIYFFSYAYGFSYMALGTAAAF 473 (647)
Q Consensus 396 mIGm~afMsEFF~D~~lAFyViliVWladqf~aI~~RT~~Skr~wpRfFy--LY~~~Fh~Yfysy~ygfSyLAL~ts~lF 473 (647)
+||+..+++||++|+..+||+++.+|+|+.|.+++.||+++|+|+||+|+ +|.+.||+|||+|.+|++|++..++..+
T Consensus 151 aI~i~s~l~~~~~e~~e~~m~~~~~~~~~~f~ld~e~~~i~k~~~p~e~Lnd~~e~~fh~~~f~~~~g~~Y~veyt~~yg 230 (381)
T KOG2092|consen 151 AIGILSFLFEFYDEQLEAFMVLVLVWLCELFTLDSERTPISKKFFPREFLNDLYELVFHIYFFSYAYGFSYLVEYTTAYG 230 (381)
T ss_pred hhhHHHhhHHHhcccHHHHHHHHHHHHHHheeeecccccccCCCCcHHHhcchhhcccchhhhhhccCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHhhccchHHHHHHH-HHHHHhhhCCCccccccceeccceeeeecccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006379 474 VQHLILYFWNHFEVPALQRFIQ-NRRTQLQQQPDFHITSSTILASTLHITRLNTRNPSLPNTDATSGPGLRPGSNQAMPP 552 (647)
Q Consensus 474 i~HsMLyF~~~fElPal~r~~~-~r~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (647)
++|+.+|||+|+|+|+++++++ +||...+|+|.+++++++++++|+|++ +|....+..+.+..- ....+..-...+
T Consensus 231 ~lrL~~~fr~r~~IP~~~~~ldt~~Qcfgdq~~rl~i~~f~gy~dtl~~t-l~~~a~N~~~~G~lh--n~q~~ehy~Fva 307 (381)
T KOG2092|consen 231 MLRLILYFRNRFEIPALQRFLDTSRQCFGDQHPRLHITSFTGYADTLHIT-LNRTARNRTPSGPLH--NTQNTEHYSFVA 307 (381)
T ss_pred HHhccHHHHHhcCCceEEEEecchhhhhhhhhhhHHHHHHhhHHHHHHHH-HHHHHhccCCCCccc--cccccceEEEee
Confidence 9999999999999999999999 888899999999999999999999999 776555443322211 112233333444
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCC-CCCCCCCCCCCchhhH--HHHHHhcCCCccchhhhhhhhhhhhcc
Q 006379 553 TNRVDAPGPERSENNNPDRVGNTMEIPGQPDLQ-QPETGPNPGSMNSFSS--LLLWILGGASSEGLNSFLSMFRDVREQ 628 (647)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (647)
||.|+. +-.+.......| ..|..+-+| +. +.|-+|+| |++|+||||+++|++++++||+|+++.
T Consensus 308 -~~~g~a---sYl~a~a~m~if--T~~~smllrysh------hqifvFi~dll~m~el~~a~~~p~aplltv~lalvg~ 374 (381)
T KOG2092|consen 308 -DGGGVA---SYLEAQAEMEIF--TVPASMLLRYSH------HQIFVFISDLLLMWELGGASSEPLAPLLTVFLALVGE 374 (381)
T ss_pred -ccccHH---HHHHHhhhHhhe--eccccccccccc------cceeehHHHHHHHHHhCCCCCcccchHHHHHHHHhCc
Confidence 333331 111111222233 333344444 44 78999999 999999999999999999999999983
No 3
>KOG2092 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4e-45 Score=373.91 Aligned_cols=303 Identities=21% Similarity=0.234 Sum_probs=213.3
Q ss_pred chhHHHHHHHhhhcCchhhhHHHHHHHHHHHHHHHHHHhhhhhcc-cCCCCcccccCcccCccceEEEEEeccCCCC-CC
Q 006379 5 HTFIRVQERFSRVLTPRVRAYLEYIYLFIAITLFCVLVVMHANYV-QQPGCSSEFAGIRMTEAQLIQIKISSAGLWS-QN 82 (647)
Q Consensus 5 ~~f~rv~~~~a~~~~~~VRr~iEyi~L~~AI~lF~iLvymH~nFv-qqp~Cl~~~~~~~wpr~gilrVeI~~~~~w~-~~ 82 (647)
.++.|++..|+..+||..||++|...|++|.++...|++||++|+ .|.+|++++++. |||-||+|||+.+....- .+
T Consensus 55 al~~~~a~~Ys~~~~~~frrl~egs~lf~a~lvl~~l~~ihi~F~rsp~scl~~~r~~-w~R~gi~rVev~~H~s~r~p~ 133 (381)
T KOG2092|consen 55 ALQNSAAQGYSYYQTREFRRLPEGSALFGAYLVLKCLVLIHILFVRSPMSCLFTLRET-WTRMGIFRVEVQHHASHRLPT 133 (381)
T ss_pred HHHHHHhhhhhhccCHHHHhccchHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHhh-hhhheeEEEEEEecchhcchH
Confidence 478999999999999999999999999999999999999999999 888999999996 999999999998743211 00
Q ss_pred CCCCccccc-cccccchhhhhhhhhhc-------------cccccccCCcccccccCcCCCCCCCCcccccccccccccc
Q 006379 83 DSDSNVVDV-TSVDNAINELEVSGKLA-------------LKFWRTDMEPVEHLAEGSVSSQSFKPTDSAVNKIDKEEAR 148 (647)
Q Consensus 83 ~~~s~~~d~-~~~~~~~~~lei~~~l~-------------~~f~k~~~~~~e~~~~~~t~~~~s~~~~d~~~~~~~ee~~ 148 (647)
. ...-.++ ++..-..-..|++.++. ..-|-. |+-.-++++.+.+++.
T Consensus 134 F-l~f~~~~~~~~vF~~~aI~i~s~l~~~~~e~~e~~m~~~~~~~~-----~~f~ld~e~~~i~k~~------------- 194 (381)
T KOG2092|consen 134 F-LLFFVHVIESLVFVPIAIGILSFLFEFYDEQLEAFMVLVLVWLC-----ELFTLDSERTPISKKF------------- 194 (381)
T ss_pred H-HHHHhhhcccccccchhhhHHHhhHHHhcccHHHHHHHHHHHHH-----HheeeecccccccCCC-------------
Confidence 0 0000000 00000001112211111 111111 0000000000000000
Q ss_pred cccccChhhhhhhhhhccccccccchhHHHHHHHHHHHHHHhhhhhcccccccCccchhhccccccchhhhhhHhhhccc
Q 006379 149 NSFALSAKEAFKSAIIHFGKKWYRRLSFVWRQAMQILRNFQKLWNIAGIHLNLDVPKLMHLLYLDRIHSYAVQWLENRTK 228 (647)
Q Consensus 149 ~~~~~s~kE~~ka~v~~~~~k~~~~~S~~~~~~~~i~~~~~klw~~~g~~~~ld~pk~~~~~~~d~l~s~~V~~~e~~~k 228 (647)
. +.|..+ | +.++.-- ..+=+-.+
T Consensus 195 --~---p~e~Ln-----------------------------------------d---------~~e~~fh--~~~f~~~~ 217 (381)
T KOG2092|consen 195 --F---PREFLN-----------------------------------------D---------LYELVFH--IYFFSYAY 217 (381)
T ss_pred --C---cHHHhc-----------------------------------------c---------hhhcccc--hhhhhhcc
Confidence 0 001000 0 0000000 00011122
Q ss_pred cCCCeEEEeccceeeccCcccccccCceEEEEEeCCCCCCCcchHHHHHHHhhcCchHHHHhhhh----ccCCceeEEec
Q 006379 229 AFEPTYLYTMEKGYFLLPEADKSRHNIRTFNISISAQHPCFGNRWQQLLINRFVGYDTILMNSLL----HTPGQGYLYNC 304 (647)
Q Consensus 229 ~~E~~yeYSlEyGfLrLs~~aR~rhnIpt~~VtLd~~~~CFGd~~~rlLL~~flGYDtILmNSlk----~~~gkGYLrN~ 304 (647)
-++|.+||+++||+|||++..|+|++||+++++||+++|||||+..|++|+.|+||||++|.+++ |..++||++|.
T Consensus 218 g~~Y~veyt~~yg~lrL~~~fr~r~~IP~~~~~ldt~~Qcfgdq~~rl~i~~f~gy~dtl~~tl~~~a~N~~~~G~lhn~ 297 (381)
T KOG2092|consen 218 GFSYLVEYTTAYGMLRLILYFRNRFEIPALQRFLDTSRQCFGDQHPRLHITSFTGYADTLHITLNRTARNRTPSGPLHNT 297 (381)
T ss_pred CchHHHHHHHHHHHHhccHHHHHhcCCceEEEEecchhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhccCCCCccccc
Confidence 36788899999999999999999999999999999999999999999999999999999999987 56889999999
Q ss_pred ccCeEEeeccccCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhHHHHHHHHhhhh----hccccchh
Q 006379 305 QTKEFYNLSYAQEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHA----QHRLPTFQ 380 (647)
Q Consensus 305 ~TgE~Y~l~~~~~~~~~~ar~~~ylv~k~~Vli~sLFvfF~fT~~VSflLR~Sq~rif~FiV~L~~~~----r~~~P~a~ 380 (647)
+|+|||+|+..+. ++ .+|+.+.. +|. +||+.+||+|||+|||||+||+||++|. ....|++|
T Consensus 298 q~~ehy~Fva~~~-----g~-asYl~a~a---~m~-----ifT~~~smllryshhqifvFi~dll~m~el~~a~~~p~ap 363 (381)
T KOG2092|consen 298 QNTEHYSFVADGG-----GV-ASYLEAQA---EME-----IFTVPASMLLRYSHHQIFVFISDLLLMWELGGASSEPLAP 363 (381)
T ss_pred cccceEEEeeccc-----cH-HHHHHHhh---hHh-----heeccccccccccccceeehHHHHHHHHHhCCCCCcccch
Confidence 9999999997653 33 68886322 343 5589999999999999999999999875 44569999
Q ss_pred HHHHHHHHHhhhhHhHhHHHHHHHHhcc
Q 006379 381 LIFVHVIESLVFVPIMIGILFFLFEFYD 408 (647)
Q Consensus 381 Li~~hVi~sLVFVpvmIGm~afMsEFF~ 408 (647)
|+ +|+++|| ||+ |+|||+
T Consensus 364 ll--tv~lalv------g~~--~aefF~ 381 (381)
T KOG2092|consen 364 LL--TVFLALV------GED--EAEFFA 381 (381)
T ss_pred HH--HHHHHHh------Cch--hhhhcC
Confidence 85 7888887 999 999996
No 4
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=37.82 E-value=47 Score=37.73 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=34.6
Q ss_pred hhHHHHHHHh-----hhcCchhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 006379 6 TFIRVQERFS-----RVLTPRVRAYLEYIYLFIAITLFCVLVVMHAN 47 (647)
Q Consensus 6 ~f~rv~~~~a-----~~~~~~VRr~iEyi~L~~AI~lF~iLvymH~n 47 (647)
+..|+++.+. ..+-+.+|+.-||-+.++||.++|+|..+|++
T Consensus 385 ~~~kie~~~~~ik~~e~~l~~~~~r~e~~~~i~aI~l~~~llk~HV~ 431 (446)
T KOG4438|consen 385 KVKKIEEKNEEIKKIELFLEIARGREELESQIVAITLECILLKMHVE 431 (446)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777774 33348899999999999999999999999975
No 5
>COG4168 SapB ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
Probab=35.63 E-value=2.7e+02 Score=30.30 Aligned_cols=113 Identities=23% Similarity=0.372 Sum_probs=71.3
Q ss_pred cchhHHHHHHHHHhhh-hHhHhHHHH-HHHHhcccchhHHHHHHHHHHhhhhhceeeccccccchhhHHHHHHHHHhhhe
Q 006379 377 PTFQLIFVHVIESLVF-VPIMIGILF-FLFEFYDDQLLAFLVLILVWLCELFTLISVRTPISMKFFPRFFLLYFLVFHIY 454 (647)
Q Consensus 377 P~a~Li~~hVi~sLVF-VpvmIGm~a-fMsEFF~D~~lAFyViliVWladqf~aI~~RT~~Skr~wpRfFyLY~~~Fh~Y 454 (647)
|+..|-++..+++++| .|+ ||++ .+++=+-|+.+.+.-.+ -|++ --||+-...+|+++.|..
T Consensus 76 aT~ELC~~af~lal~~GiPl--G~iagv~~~kw~d~~is~~s~~------G~Si--------PvFWlAl~ll~ffslh~~ 139 (321)
T COG4168 76 ATMELCFLAFGLALIVGIPL--GMIAGVTRHKWLDKLISAISLL------GFSI--------PVFWLALLLLLFFSLHLG 139 (321)
T ss_pred cHHHHHHHHHHHHHHHcccH--HHHHHhhhhhHHHHHHHHHHHh------ccCc--------hHHHHHHHHHHHHHHhcc
Confidence 3355556667777665 454 8775 55666666665554221 1222 137888889999999999
Q ss_pred eeeecccch---------hHHHHHHHH------------HHHHHHHHHHhhccchH--HHHHHHHHHHHhhhCC
Q 006379 455 FFSYAYGFS---------YMALGTAAA------------FVQHLILYFWNHFEVPA--LQRFIQNRRTQLQQQP 505 (647)
Q Consensus 455 fysy~ygfS---------yLAL~ts~l------------Fi~HsMLyF~~~fElPa--l~r~~~~r~~~~~~~~ 505 (647)
.+.--+||. ++|++-.|+ .+||+.|=..--=-.|. +-|.+++|-+.+.+|-
T Consensus 140 ~~pv~GrydLLY~ikpiTGfalIDaw~s~spyRt~~~qs~lqHl~LP~lvL~iaPTtevir~mr~s~~~Vl~qN 213 (321)
T COG4168 140 WLPVSGRYDLLYEIKPITGFALIDAWLSDSPYRTEMIQSAIQHLILPTLVLSVAPTTEVIRLMRQSTEEVLNQN 213 (321)
T ss_pred ceecccceeeeeeeccccccHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhh
Confidence 999988984 788888886 35566543322222232 3478888877766554
No 6
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=27.27 E-value=1.9e+02 Score=29.49 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=19.8
Q ss_pred CCCcchHHHHHHHhhcCchHHHHhhhhc
Q 006379 267 PCFGNRWQQLLINRFVGYDTILMNSLLH 294 (647)
Q Consensus 267 ~CFGd~~~rlLL~~flGYDtILmNSlk~ 294 (647)
+|=||.-++.-++ --||.|||.+++.
T Consensus 19 ~y~gd~~~~~~IE--aAYD~ILM~rL~~ 44 (194)
T PF11833_consen 19 QYAGDEKSREAIE--AAYDAILMERLRQ 44 (194)
T ss_pred HhcCCHHHHHHHH--HHHHHHHHHHHHH
Confidence 4556666666666 5799999999984
No 7
>PF00317 Ribonuc_red_lgN: Ribonucleotide reductase, all-alpha domain; InterPro: IPR013509 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The reduction of ribonucleotides to deoxyribonucleotides involves the transfer of free radicals, the function of each metallocofactor is to generate an active site thiyl radical. This thiyl radical then initiates the nucleotide reduction process by hydrogen atom abstraction from the ribonucleotide []. The radical-based reaction involves five cysteines: two of these are located at adjacent anti-parallel strands in a new type of ten-stranded alpha/beta-barrel; two others reside at the carboxyl end in a flexible arm; and the fifth, in a loop in the centre of the barrel, is positioned to initiate the radical reaction []. There are several regions of similarity in the sequence of the large chain of prokaryotes, eukaryotes and viruses spread across 3 domains: an N-terminal domain common to the mammalian and bacterial enzymes; a C-terminal domain common to the mammalian and viral ribonucleotide reductases; and a central domain common to all three [].; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0005524 ATP binding, 0006260 DNA replication, 0055114 oxidation-reduction process; PDB: 1PEM_A 2BQ1_E 1PEU_A 1PEQ_A 1PEO_A 1XJN_A 1XJK_A 3O0O_B 1XJF_A 3O0Q_A ....
Probab=26.33 E-value=59 Score=28.14 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=16.0
Q ss_pred CccchhHHHHHHHhhhcC
Q 006379 2 DPEHTFIRVQERFSRVLT 19 (647)
Q Consensus 2 ~~~~~f~rv~~~~a~~~~ 19 (647)
+|+++|.|||...|..-+
T Consensus 27 tpq~~~~RVA~~la~~e~ 44 (83)
T PF00317_consen 27 TPQEMFMRVAMALASAEP 44 (83)
T ss_dssp SHHHHHHHHHHHHHTCCG
T ss_pred CHHHHHHHHHHHHHHHcc
Confidence 699999999999998665
No 8
>KOG4220 consensus Muscarinic acetylcholine receptor [Signal transduction mechanisms]
Probab=25.82 E-value=1.1e+03 Score=27.55 Aligned_cols=124 Identities=16% Similarity=0.195 Sum_probs=56.4
Q ss_pred hheeeeecccchhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhCCCccccccceecccee----eeecccC
Q 006379 452 HIYFFSYAYGFSYMALGTAAAFVQHLILYFWNHFEVPALQRFIQNRRTQLQQQPDFHITSSTILASTLH----ITRLNTR 527 (647)
Q Consensus 452 h~Yfysy~ygfSyLAL~ts~lFi~HsMLyF~~~fElPal~r~~~~r~~~~~~~~~~~~~~~~~~~s~~~----~~~~~~~ 527 (647)
|+=|++=|+=--+-|..+-++=..-+.+.||+=| |--++|+.++..-+.-....+++--+..| ..+-+.+
T Consensus 184 ~iQFlsnp~iTfGTAiAAFYlPVtiM~~LY~rIy------ret~kR~k~~~~lq~s~~~~~~~~~~~~~~~~~~~~s~r~ 257 (503)
T KOG4220|consen 184 YIQFLSNPAITFGTAIAAFYLPVTIMTILYWRIY------RETRKRQKELAKLQASLPSFSAIKLSPESPKGDSKSSGRS 257 (503)
T ss_pred EEEeecCceeehhHHHHHHHhhHHHHHHHHHHHH------HHHHHHHHhhhhcccccccccccccCcccccccccCCCCC
Confidence 6777775554445566555555555666777655 33445544444433333333444334444 2233333
Q ss_pred CCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCccCCCC
Q 006379 528 NPSLPNT-DATSGPGLRPGSNQAMPPTNRVDAPGP-ERSENNNPDRVGNTMEIPGQ 581 (647)
Q Consensus 528 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 581 (647)
.|+.++. +...+++.+.+..++.+.++..-.... +..+..-.+..++|+..|+.
T Consensus 258 ~p~~~~~~~~~~~~~~~~~k~ps~~~~~~~~~s~~edsd~~~~~s~~~s~~~~~~s 313 (503)
T KOG4220|consen 258 SPSEEGKREPLTNGCISNSKAPSLTPTESWKPSEKEDSDESSSESLTSSPLERPGS 313 (503)
T ss_pred CCccccccccCCCCccccccCcccCCccCCCCccccccccccccccccCCcccccc
Confidence 3333332 222233334444455555332211111 22222223456677777754
No 9
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=24.64 E-value=7e+02 Score=24.73 Aligned_cols=28 Identities=11% Similarity=0.166 Sum_probs=21.1
Q ss_pred hHHHHHHHHhcccchhHHHHHHHHHHhh
Q 006379 397 IGILFFLFEFYDDQLLAFLVLILVWLCE 424 (647)
Q Consensus 397 IGm~afMsEFF~D~~lAFyViliVWlad 424 (647)
+++-.+++-+++++..|.-+.+.+|+.=
T Consensus 172 ~sl~~~~S~~~~~~~~a~~~~~~~~~~~ 199 (277)
T PF12679_consen 172 ISLGLLISSLFRSSASAILASLGLLFLL 199 (277)
T ss_pred HHHHHHHHHHHCcHHHHHHHHHHHHHHH
Confidence 5666677888898888888777777544
No 10
>PF04021 Class_IIIsignal: Class III signal peptide; InterPro: IPR007166 This entry represents an amino terminal motif QXSXEXXXL thought to be part of a class III signal sequence for a family of archaeal proteins. The Q residue is the +1 residue of the signal peptidase cleavage site []. Two proteins containing this motif are cleaved by a type IV pilin-like signal peptidase.
Probab=22.79 E-value=1.2e+02 Score=22.04 Aligned_cols=24 Identities=29% Similarity=0.557 Sum_probs=18.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhh
Q 006379 21 RVRAYLEYIYLFIAITLFCVLVVM 44 (647)
Q Consensus 21 ~VRr~iEyi~L~~AI~lF~iLvym 44 (647)
|-...+||+.|+.+++.-.+.+-.
T Consensus 2 rGQ~SlE~~ili~~vlv~~~i~~~ 25 (28)
T PF04021_consen 2 RGQISLEFIILIAAVLVIAIIVIY 25 (28)
T ss_pred ccHHhHHHHHHHHHHHHHHHHHHh
Confidence 556789999999998887776543
Done!