Query 006379
Match_columns 647
No_of_seqs 88 out of 90
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 23:27:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006379.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006379hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nx7_A Nematocyst outer WALL a 12.1 55 0.0019 22.7 0.3 8 50-57 8-15 (28)
2 2pbi_A Regulator of G-protein 6.0 2.1E+02 0.007 30.9 1.8 60 266-328 49-123 (424)
3 2kv5_A FST, putative uncharact 5.3 3.9E+02 0.013 19.6 2.3 18 390-407 7-24 (33)
4 1d1r_A Hypothetical 11.4 KD pr 5.1 3.1E+02 0.011 24.8 2.2 34 45-78 7-42 (116)
5 1qys_A TOP7; alpha-beta, novel 4.7 62 0.0021 28.1 -2.6 64 224-287 11-79 (106)
6 2k21_A Potassium voltage-gated 3.8 6.4E+02 0.022 23.5 3.2 19 335-353 57-75 (138)
7 1e0n_A Hypothetical protein; Y 3.7 4.8E+02 0.016 17.7 1.7 16 294-309 7-22 (27)
8 3n57_C Atrial natriuretic fact 3.6 2.5E+02 0.0086 19.9 0.3 11 265-275 4-14 (28)
9 1vf5_H Protein PET N; photosyn 3.5 5.8E+02 0.02 18.2 2.0 12 345-356 14-25 (29)
10 3ijm_A Uncharacterized restric 3.5 6.9E+02 0.023 23.6 3.1 18 298-315 112-129 (151)
No 1
>2nx7_A Nematocyst outer WALL antigen; cysteine rich, disulfide bonds, rich in turns, structural protein; NMR {Hydra vulgaris}
Probab=12.06 E-value=55 Score=22.71 Aligned_cols=8 Identities=88% Similarity=1.477 Sum_probs=6.6
Q ss_pred cCCCCccc
Q 006379 50 QQPGCSSE 57 (647)
Q Consensus 50 qqp~Cl~~ 57 (647)
|||||++.
T Consensus 8 qqpgcssa 15 (28)
T 2nx7_A 8 QQPGCSSA 15 (28)
T ss_dssp HSTTCCGG
T ss_pred cCCCcccc
Confidence 88999874
No 2
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=6.01 E-value=2.1e+02 Score=30.91 Aligned_cols=60 Identities=22% Similarity=0.331 Sum_probs=37.6
Q ss_pred CCCC-cchHHHHHHHhhcCchHHHHhhhhc---cCCceeEEeccc---------CeEEeec--cccCCCCCCcccchh
Q 006379 266 HPCF-GNRWQQLLINRFVGYDTILMNSLLH---TPGQGYLYNCQT---------KEFYNLS--YAQEPPEGPAKFGDY 328 (647)
Q Consensus 266 ~~CF-Gd~~~rlLL~~flGYDtILmNSlk~---~~gkGYLrN~~T---------gE~Y~l~--~~~~~~~~~ar~~~y 328 (647)
..|| |..+..+|++++ +.|+ --++.- --..||++.+.. +-.|||. |.|.+..|.+.=++|
T Consensus 49 p~~F~Gsd~V~WL~~~~-~~~~--~EA~~lg~~L~~~Gyi~~v~d~~~~~fk~d~~~Yrfq~py~wps~~w~~~~~dy 123 (424)
T 2pbi_A 49 PHAMTGGDVLQWITQRL-WISN--LEAQNLGNFIVKYGYIYPLQDPKNLILKPDSSLYRFQTPYFWPTQQWPAEDTDY 123 (424)
T ss_dssp CCCEEHHHHHHHHHHHH-TCCH--HHHHHHHHHHHHTTSEEESSSTTCCSCCSSSCEEEECCGGGSCCSSCCCCHHHH
T ss_pred CCccccHHHHHHHHHcC-CCCh--HHHHHHHHHHHHCCCEEeCCccccccccCCCeeEEeCCcccCcccCCCcchhHH
Confidence 4899 999999999988 5665 233221 124688887754 4578886 455554444432344
No 3
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=5.34 E-value=3.9e+02 Score=19.60 Aligned_cols=18 Identities=28% Similarity=0.626 Sum_probs=13.0
Q ss_pred hhhhHhHhHHHHHHHHhc
Q 006379 390 LVFVPIMIGILFFLFEFY 407 (647)
Q Consensus 390 LVFVpvmIGm~afMsEFF 407 (647)
++.+|+.||++--|++-.
T Consensus 7 ~IIaPivVGvvl~L~d~W 24 (33)
T 2kv5_A 7 LVIAPIFVGLVLEMISRV 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344788999988776654
No 4
>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region; alpha-beta plait, open-faced beta sandwich, ferredoxin-like fold; NMR {Escherichia coli} SCOP: d.64.1.1
Probab=5.12 E-value=3.1e+02 Score=24.77 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=12.8
Q ss_pred hhhcccCCC--CcccccCcccCccceEEEEEeccCC
Q 006379 45 HANYVQQPG--CSSEFAGIRMTEAQLIQIKISSAGL 78 (647)
Q Consensus 45 H~nFvqqp~--Cl~~~~~~~wpr~gilrVeI~~~~~ 78 (647)
+.+|++.+| |-+.-...-=+++|.|+|.+.|+|.
T Consensus 7 ~~vyst~~~~~~~~~~~~~~p~~~~~V~I~~er~gR 42 (116)
T 1d1r_A 7 RLVYSTETGRIDEPKAAPVRPKGDGVVRIQRQTSGR 42 (116)
T ss_dssp ---------------------CCCCEEEEEECCCSS
T ss_pred cEEEeCCCCccCccccccCCCCCCCeEEEEEEeCCC
Confidence 456776555 5443223223578999999998766
No 5
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=4.68 E-value=62 Score=28.10 Aligned_cols=64 Identities=25% Similarity=0.407 Sum_probs=39.0
Q ss_pred hhccccCCCeEEEeccceeeccCcc---cccccCceEEEEEeCCCCCCCcchHHHHHHHhh--cCchHH
Q 006379 224 ENRTKAFEPTYLYTMEKGYFLLPEA---DKSRHNIRTFNISISAQHPCFGNRWQQLLINRF--VGYDTI 287 (647)
Q Consensus 224 e~~~k~~E~~yeYSlEyGfLrLs~~---aR~rhnIpt~~VtLd~~~~CFGd~~~rlLL~~f--lGYDtI 287 (647)
++..|.|+|+|--..|-.+-..-.+ .-...+-.-+.|++.++.+--.+++...+++-| +||.+|
T Consensus 11 ddngknfdytytvtteselqkvlnelmdyikkqgakrvrisitartkkeaekfaailikvfaelgyndi 79 (106)
T 1qys_A 11 DDNGKNFDYTYTVTTESELQKVLNELMDYIKKQGAKRVRISITARTKKEAEKFAAILIKVFAELGYNDI 79 (106)
T ss_dssp ECSSCEEEEEEEESSSSHHHHHHHHHHHHHHHHCCSEEEEEEECSSHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred cCCCcccceEEEEeeHHHHHHHHHHHHHHHHhcCCcEEEEEEEecchhHHHHHHHHHHHHHHHhCCcce
Confidence 4456788888877776543211111 112334444556666666666778888888766 788775
No 6
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=3.75 E-value=6.4e+02 Score=23.55 Aligned_cols=19 Identities=26% Similarity=0.681 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHhHHh
Q 006379 335 VLMMSLFVFFTTTMSVSFT 353 (647)
Q Consensus 335 Vli~sLFvfF~fT~~VSfl 353 (647)
.++|.+|-||+..+.+|++
T Consensus 57 L~vmgffgff~~GImLsYi 75 (138)
T 2k21_A 57 LMVLGFFGFFTLGIMLSYI 75 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4678889888887777764
No 7
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=3.69 E-value=4.8e+02 Score=17.66 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=12.8
Q ss_pred ccCCceeEEecccCeE
Q 006379 294 HTPGQGYLYNCQTKEF 309 (647)
Q Consensus 294 ~~~gkGYLrN~~TgE~ 309 (647)
.+.|+=|.+|..|||-
T Consensus 7 ~~~g~~YYyN~~T~~s 22 (27)
T 1e0n_A 7 HENGRPLYYNAEQKTK 22 (27)
T ss_dssp ESSSSEEEEETTTTEE
T ss_pred CCCCCeEEEECCCCCE
Confidence 3577889999999873
No 8
>3n57_C Atrial natriuretic factor; insulysin, insulinase, A-beta degrading enzyme, cryptidase, hydrolase, hormone, disease mutation, diabetes mellitus; 3.03A {Homo sapiens} PDB: 1anp_A
Probab=3.62 E-value=2.5e+02 Score=19.90 Aligned_cols=11 Identities=36% Similarity=1.008 Sum_probs=8.4
Q ss_pred CCCCCcchHHH
Q 006379 265 QHPCFGNRWQQ 275 (647)
Q Consensus 265 ~~~CFGd~~~r 275 (647)
.+.|||.+..|
T Consensus 4 ~~gCFG~riDR 14 (28)
T 3n57_C 4 RSSCFGGRMDR 14 (28)
T ss_pred cccccCccccc
Confidence 46899988765
No 9
>1vf5_H Protein PET N; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.27.1 PDB: 2d2c_H* 2e74_H* 2e75_H* 2e76_H* 2zt9_H*
Probab=3.51 E-value=5.8e+02 Score=18.19 Aligned_cols=12 Identities=17% Similarity=0.188 Sum_probs=7.9
Q ss_pred HHHHHhHHhhhh
Q 006379 345 TTTMSVSFTLRE 356 (647)
Q Consensus 345 ~fT~~VSflLR~ 356 (647)
+||.++|++.+.
T Consensus 14 vftfSlslVVWG 25 (29)
T 1vf5_H 14 VFTWSIAMVVWG 25 (29)
T ss_dssp HHHHHHHHHHHH
T ss_pred HhheeeeEEEEe
Confidence 346688887664
No 10
>3ijm_A Uncharacterized restriction endonuclease-like FOL superfamily protein; DUF820, cyanobacteria, PD(D/E)XK superfamily, structural GEN PSI-2; 1.70A {Spirosoma linguale}
Probab=3.48 E-value=6.9e+02 Score=23.61 Aligned_cols=18 Identities=17% Similarity=0.648 Sum_probs=16.6
Q ss_pred ceeEEecccCeEEeeccc
Q 006379 298 QGYLYNCQTKEFYNLSYA 315 (647)
Q Consensus 298 kGYLrN~~TgE~Y~l~~~ 315 (647)
.||+||..|++-++++.+
T Consensus 112 EGFVynYkt~~W~rYr~g 129 (151)
T 3ijm_A 112 EGFVFNYKTQQWLRYRLG 129 (151)
T ss_dssp EEEEEETTTTEEEEEETT
T ss_pred eeeeEeeccCceeEEEcC
Confidence 899999999999999864
Done!