Your job contains 1 sequence.
>006380
MEFDEYEYLEKTVEEQRQQKQDDDSSSKKKAKREEKSERSYRKREDSEEEEEEEKSRSGK
RSRRDEDEENGSRRDRDRDRDRDKERHRRDRDRDRDRGRERERETERDRERSRERREKEK
ERERRERRDREKERERERDGERRSSSRSRRSSSQSRRSSSRSRRERERESERERELELER
ERERERELRERERDLEMRESRRYKEKKEVVEPEADPERDQRTVFAYQMPLKATERDVYEF
FSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVGMVF
FLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQ
SNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKG
FGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSADFDDDDGGGLA
LNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPAVTAP
VIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRS
AGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEAKFKS
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 006380
(647 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2178198 - symbol:AT5G09880 species:3702 "Arabi... 1125 3.8e-148 3
UNIPROTKB|E2R4L0 - symbol:RBM39 "Uncharacterized protein"... 517 2.6e-65 2
UNIPROTKB|Q14498 - symbol:RBM39 "RNA-binding protein 39" ... 517 2.6e-65 2
MGI|MGI:2157953 - symbol:Rbm39 "RNA binding motif protein... 517 2.6e-65 2
UNIPROTKB|F1MA64 - symbol:Rbm39 "Protein Rbm39" species:1... 517 2.6e-65 2
RGD|1310071 - symbol:Rbm39 "RNA binding motif protein 39"... 515 4.2e-65 2
ZFIN|ZDB-GENE-040426-2852 - symbol:rbm39a "RNA binding mo... 520 5.4e-65 2
UNIPROTKB|E1BRU3 - symbol:LOC100858247 "Uncharacterized p... 514 5.4e-65 2
UNIPROTKB|F6QIA5 - symbol:RBM39 "Uncharacterized protein"... 507 2.9e-64 2
UNIPROTKB|F2Z5I2 - symbol:RBM39 "Uncharacterized protein"... 507 2.9e-64 2
ZFIN|ZDB-GENE-050327-97 - symbol:rbm39b "RNA binding moti... 502 3.3e-63 2
FB|FBgn0031883 - symbol:CG11266 species:7227 "Drosophila ... 334 1.7e-62 3
UNIPROTKB|E1P5S2 - symbol:RBM39 "RNA-binding protein 39" ... 517 8.8e-61 2
UNIPROTKB|G3XAC6 - symbol:RBM39 "RNA-binding region (RNP1... 336 2.9e-46 2
UNIPROTKB|H0Y4X3 - symbol:RBM39 "RNA-binding protein 39" ... 203 4.4e-45 3
POMBASE|SPAC19G12.07c - symbol:rsd1 "RNA-binding protein ... 236 1.4e-44 3
UNIPROTKB|I3LPP8 - symbol:RBM23 "Uncharacterized protein"... 306 4.1e-42 2
UNIPROTKB|E2QVA8 - symbol:RBM23 "Uncharacterized protein"... 306 3.9e-41 2
DICTYBASE|DDB_G0283687 - symbol:DDB_G0283687 "RNA-binding... 211 7.1e-41 3
UNIPROTKB|F1MY46 - symbol:RBM23 "Uncharacterized protein"... 306 1.4e-40 2
UNIPROTKB|Q86U06 - symbol:RBM23 "Probable RNA-binding pro... 303 1.6e-40 2
ASPGD|ASPL0000055210 - symbol:AN0917 species:162425 "Emer... 275 1.3e-38 3
UNIPROTKB|G3XAP0 - symbol:RBM23 "RNA binding motif protei... 303 5.7e-38 2
GENEDB_PFALCIPARUM|MAL13P1.120 - symbol:MAL13P1.120 "spli... 224 4.3e-37 3
UNIPROTKB|Q8IE99 - symbol:MAL13P1.120 "Splicing factor, p... 224 4.3e-37 3
WB|WBGene00021921 - symbol:Y55F3AM.3 species:6239 "Caenor... 193 4.3e-36 3
UNIPROTKB|J9P448 - symbol:RBM23 "Uncharacterized protein"... 258 2.1e-33 2
UNIPROTKB|F6XHX3 - symbol:RBM23 "Uncharacterized protein"... 251 8.6e-33 2
UNIPROTKB|D4A5G0 - symbol:Rbm39 "Protein Rbm39" species:1... 202 1.7e-26 2
UNIPROTKB|G3V546 - symbol:RBM23 "Probable RNA-binding pro... 185 3.7e-24 2
UNIPROTKB|Q5QP23 - symbol:RBM39 "RNA-binding protein 39" ... 166 7.4e-20 2
UNIPROTKB|Q5QP21 - symbol:RBM39 "RNA-binding protein 39" ... 166 9.9e-19 2
UNIPROTKB|G3V5Z6 - symbol:RBM23 "Probable RNA-binding pro... 203 1.0e-15 1
UNIPROTKB|H0YJJ3 - symbol:RBM23 "Probable RNA-binding pro... 203 1.0e-15 1
ZFIN|ZDB-GENE-050706-131 - symbol:u2af2a "U2 small nuclea... 131 1.3e-13 3
FB|FBgn0034834 - symbol:LS2 "Large Subunit 2" species:722... 150 2.2e-13 4
WB|WBGene00004389 - symbol:rnp-6 species:6239 "Caenorhabd... 161 3.8e-13 2
ZFIN|ZDB-GENE-040426-1881 - symbol:u2af2b "U2 small nucle... 128 4.6e-13 3
UNIPROTKB|K7ENG2 - symbol:U2AF2 "Splicing factor U2AF 65 ... 122 7.7e-13 2
DICTYBASE|DDB_G0285403 - symbol:DDB_G0285403 "RNA-binding... 150 1.2e-12 3
UNIPROTKB|P26368 - symbol:U2AF2 "Splicing factor U2AF 65 ... 123 4.4e-12 3
MGI|MGI:98886 - symbol:U2af2 "U2 small nuclear ribonucleo... 123 4.4e-12 3
RGD|1597319 - symbol:LOC690372 "similar to U2 (RNU2) smal... 123 4.4e-12 3
UNIPROTKB|E2R0G3 - symbol:U2AF2 "Uncharacterized protein"... 122 5.4e-12 3
UNIPROTKB|F1P1V2 - symbol:LOC426301 "Uncharacterized prot... 131 8.2e-12 2
TAIR|locus:2206001 - symbol:AT1G60900 species:3702 "Arabi... 160 1.0e-11 3
UNIPROTKB|F1N238 - symbol:PUF60 "Poly(U)-binding-splicing... 131 1.1e-11 2
UNIPROTKB|Q24JZ8 - symbol:U2AF2 "Uncharacterized protein"... 123 1.1e-11 3
UNIPROTKB|E2RA48 - symbol:PUF60 "Uncharacterized protein"... 131 1.2e-11 2
UNIPROTKB|Q9UHX1 - symbol:PUF60 "Poly(U)-binding-splicing... 131 1.3e-11 2
ZFIN|ZDB-GENE-040625-116 - symbol:puf60b "poly-U binding ... 131 1.3e-11 2
UNIPROTKB|J9P4I7 - symbol:PUF60 "Uncharacterized protein"... 131 1.3e-11 2
FB|FBgn0005411 - symbol:U2af50 "U2 small nuclear riboprot... 118 1.4e-11 3
MGI|MGI:1915209 - symbol:Puf60 "poly-U binding splicing f... 131 2.7e-11 2
RGD|621674 - symbol:Puf60 "poly-U binding splicing factor... 131 2.7e-11 2
UNIPROTKB|Q2HJG2 - symbol:PUF60 "Poly(U)-binding-splicing... 131 2.8e-11 2
ZFIN|ZDB-GENE-030131-2891 - symbol:puf60a "poly-U binding... 130 7.7e-11 2
UNIPROTKB|P98179 - symbol:RBM3 "Putative RNA-binding prot... 157 1.1e-10 1
CGD|CAL0005232 - symbol:orf19.6090 species:5476 "Candida ... 166 1.3e-10 2
UNIPROTKB|Q5AB84 - symbol:NSR1 "Potential nuclear localiz... 166 1.3e-10 2
UNIPROTKB|F6RBQ9 - symbol:F6RBQ9 "Uncharacterized protein... 155 1.8e-10 1
UNIPROTKB|E2R771 - symbol:RBM3 "Uncharacterized protein" ... 155 1.8e-10 1
UNIPROTKB|I3L5X7 - symbol:RBM3 "Uncharacterized protein" ... 155 1.8e-10 1
UNIPROTKB|Q60A61 - symbol:MCA1010 "RNA-binding protein" s... 155 1.8e-10 1
MGI|MGI:1099460 - symbol:Rbm3 "RNA binding motif protein ... 155 1.8e-10 1
UNIPROTKB|G3V6P6 - symbol:Rbm3 "Putative RNA-binding prot... 155 1.8e-10 1
TAIR|locus:2122990 - symbol:AT4G19610 species:3702 "Arabi... 126 2.5e-10 2
TAIR|locus:2115280 - symbol:ATU2AF65A species:3702 "Arabi... 154 3.2e-10 2
UNIPROTKB|Q5QP22 - symbol:RBM39 "RNA-binding protein 39" ... 152 3.9e-10 1
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 129 4.4e-10 3
UNIPROTKB|Q48A10 - symbol:CPS_0338 "RNA-binding protein" ... 151 5.0e-10 1
TIGR_CMR|CPS_0338 - symbol:CPS_0338 "RNA-binding protein"... 151 5.0e-10 1
RGD|620145 - symbol:Rbm3 "RNA binding motif (RNP1, RRM) p... 151 5.0e-10 1
WB|WBGene00006697 - symbol:uaf-1 species:6239 "Caenorhabd... 111 5.7e-10 2
POMBASE|SPAC140.02 - symbol:gar2 "nucleolar protein requi... 147 9.9e-10 2
ASPGD|ASPL0000073559 - symbol:AN10574 species:162425 "Eme... 175 1.3e-09 1
UNIPROTKB|Q83CD7 - symbol:CBU_1183 "Glycine-rich RNA-bind... 147 1.3e-09 1
TIGR_CMR|CBU_1183 - symbol:CBU_1183 "nucleic acid binding... 147 1.3e-09 1
TAIR|locus:2049721 - symbol:AT2G37220 species:3702 "Arabi... 162 1.7e-09 2
ASPGD|ASPL0000076731 - symbol:AN4865 species:162425 "Emer... 157 1.9e-09 2
UNIPROTKB|F5GXV8 - symbol:RBM7 "RNA-binding protein 7" sp... 128 2.1e-09 2
UNIPROTKB|I3L521 - symbol:I3L521 "Uncharacterized protein... 128 2.1e-09 2
UNIPROTKB|F1NHX3 - symbol:LEMD3 "Uncharacterized protein"... 166 2.1e-09 1
UNIPROTKB|F1NIB4 - symbol:HNRNPAB "Uncharacterized protei... 120 2.2e-09 2
UNIPROTKB|Q9KVI6 - symbol:VC_0159 "RNA-binding protein" s... 145 2.2e-09 1
TIGR_CMR|VC_0159 - symbol:VC_0159 "RNA-binding protein" s... 145 2.2e-09 1
UNIPROTKB|F1P1R2 - symbol:RBM19 "Uncharacterized protein"... 135 2.4e-09 2
UNIPROTKB|F1NZN4 - symbol:LEMD3 "Uncharacterized protein"... 166 2.4e-09 1
FB|FBgn0028577 - symbol:pUf68 "poly U binding factor 68kD... 133 2.6e-09 2
ZFIN|ZDB-GENE-980526-76 - symbol:elavl3 "ELAV (embryonic ... 144 2.6e-09 2
UNIPROTKB|I3LQ36 - symbol:I3LQ36 "Uncharacterized protein... 144 2.8e-09 1
UNIPROTKB|Q5R8F7 - symbol:PABPC1 "Polyadenylate-binding p... 128 3.4e-09 3
UNIPROTKB|J9NVV1 - symbol:LEMD3 "Uncharacterized protein"... 167 3.5e-09 1
UNIPROTKB|E2R6G2 - symbol:CIRBP "Uncharacterized protein"... 143 3.7e-09 1
UNIPROTKB|F6XHA7 - symbol:CIRBP "Uncharacterized protein"... 143 3.7e-09 1
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi... 143 3.7e-09 1
UNIPROTKB|K7EMY9 - symbol:CIRBP "Cold-inducible RNA-bindi... 143 3.7e-09 1
UNIPROTKB|K7ENX8 - symbol:CIRBP "Cold-inducible RNA-bindi... 143 3.7e-09 1
UNIPROTKB|K7EPM4 - symbol:CIRBP "Cold-inducible RNA-bindi... 143 3.7e-09 1
UNIPROTKB|K7ER40 - symbol:CIRBP "Cold-inducible RNA-bindi... 143 3.7e-09 1
WARNING: Descriptions of 925 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2178198 [details] [associations]
symbol:AT5G09880 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q14103
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI EMBL:AY054603
IPI:IPI00543371 RefSeq:NP_568220.1 UniGene:At.6946
ProteinModelPortal:Q93Y25 SMR:Q93Y25 STRING:Q93Y25 PRIDE:Q93Y25
EnsemblPlants:AT5G09880.1 GeneID:830848 KEGG:ath:AT5G09880
TAIR:At5g09880 InParanoid:Q93Y25 PhylomeDB:Q93Y25
ProtClustDB:CLSN2723619 Genevestigator:Q93Y25 Uniprot:Q93Y25
Length = 527
Score = 1125 (401.1 bits), Expect = 3.8e-148, Sum P(3) = 3.8e-148
Identities = 230/327 (70%), Positives = 259/327 (79%)
Query: 322 YIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSN-TSAGGTATGPYGAIDRKL 380
YIEFYDVMSVPMAIALSGQL LGQPVMVKPSEAEKNL QSN T+ GGT GP DRKL
Sbjct: 213 YIEFYDVMSVPMAIALSGQLFLGQPVMVKPSEAEKNLAQSNSTTVGGT--GP---ADRKL 267
Query: 381 YVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALN 440
YVGNLHFNM+E QLR++FE FGPVELVQLPLD ETGQCKGFGF+QF QLEH+KAAQ ALN
Sbjct: 268 YVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALN 327
Query: 441 GKLEIVGRTLKVSSVTDHVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKLDRTGIAT 500
GKLEI GRT+KVSSV+DH+GTQD+A KSA LALNAQSRA+LMQKLDR+GIAT
Sbjct: 328 GKLEIAGRTIKVSSVSDHIGTQDSAPKSADFDDDDGGGLALNAQSRAMLMQKLDRSGIAT 387
Query: 501 SIAGSLGVAPAVNGSAVNQQAISLXXXXXXXXXXXXXXXXXXXNMAAEFIGSPSECLLLK 560
SI GSLGV P +NG+A NQ ++ + E +G PSECLLLK
Sbjct: 388 SIVGSLGV-PGLNGAAFNQPGMN------PSFPTSVLPTTAIPSFVNEHVGLPSECLLLK 440
Query: 561 NMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRA 620
NMFDPA ET+P+FDLEI+ DV +ECSKYG V HIYVDK SAGFVYLRF+S EAAA+AQRA
Sbjct: 441 NMFDPATETEPNFDLEIRDDVADECSKYGPVNHIYVDKNSAGFVYLRFQSVEAAAAAQRA 500
Query: 621 MHMRWFARRLISAIFMKPEDYEAKFKS 647
MHMRWFA+++ISA FM P +YEAK K+
Sbjct: 501 MHMRWFAQKMISATFMPPHEYEAKAKA 527
Score = 289 (106.8 bits), Expect = 3.8e-148, Sum P(3) = 3.8e-148
Identities = 57/63 (90%), Positives = 61/63 (96%)
Query: 203 YKEKKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSK 262
+++KK+ EPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSK
Sbjct: 152 HRDKKD--EPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSK 209
Query: 263 GVG 265
GVG
Sbjct: 210 GVG 212
Score = 69 (29.3 bits), Expect = 3.8e-148, Sum P(3) = 3.8e-148
Identities = 13/13 (100%), Positives = 13/13 (100%)
Query: 1 MEFDEYEYLEKTV 13
MEFDEYEYLEKTV
Sbjct: 1 MEFDEYEYLEKTV 13
>UNIPROTKB|E2R4L0 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
Length = 530
Score = 517 (187.1 bits), Expect = 2.6e-65, Sum P(2) = 2.6e-65
Identities = 124/325 (38%), Positives = 173/325 (53%)
Query: 322 YIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLY 381
Y+EF DV SVP+AI L+GQ +LG P++V+ S+AEKN ++ A G G + +LY
Sbjct: 198 YVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKN--RAAAMANNLQKGSAGPM--RLY 253
Query: 382 VGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG 441
VG+LHFN+TE LR +FEPFG +E +QL +D ETG+ KG+GF+ F+ E AK A LNG
Sbjct: 254 VGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG 313
Query: 442 KLEIVGRTLKVSSVTDHVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKLDRTGIATS 501
E+ GR +KV VT+ +A+ + L R LM +L G
Sbjct: 314 -FELAGRPMKVGHVTERTDAS-SASSFLDSDELERTGIDLGTTGRLQLMARLAE-GTGLQ 370
Query: 502 IAGSLGVAPAVNGSAVNQQAISLXXXXXXXXXXXXXXXXXXXNMAAEFIGSPSECLLLKN 561
I + A ++GS AA ++C L N
Sbjct: 371 IPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQPLATQCFQLSN 430
Query: 562 MFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFESTEAAASAQRA 620
MF+P E + +D EI+ DV EEC+K+G V HIYVDK SA G VY++ S AA +A A
Sbjct: 431 MFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNA 490
Query: 621 MHMRWFARRLISAIFMKPEDYEAKF 645
+H RWFA ++I+A ++ Y F
Sbjct: 491 LHGRWFAGKMITAAYVPLPTYHNLF 515
Score = 166 (63.5 bits), Expect = 2.6e-65, Sum P(2) = 2.6e-65
Identities = 37/64 (57%), Positives = 43/64 (67%)
Query: 204 KEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR 260
K+K V EP PE RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRR
Sbjct: 133 KDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 192
Query: 261 SKGV 264
SKG+
Sbjct: 193 SKGI 196
>UNIPROTKB|Q14498 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
Uniprot:Q14498
Length = 530
Score = 517 (187.1 bits), Expect = 2.6e-65, Sum P(2) = 2.6e-65
Identities = 124/325 (38%), Positives = 173/325 (53%)
Query: 322 YIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLY 381
Y+EF DV SVP+AI L+GQ +LG P++V+ S+AEKN ++ A G G + +LY
Sbjct: 198 YVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKN--RAAAMANNLQKGSAGPM--RLY 253
Query: 382 VGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG 441
VG+LHFN+TE LR +FEPFG +E +QL +D ETG+ KG+GF+ F+ E AK A LNG
Sbjct: 254 VGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG 313
Query: 442 KLEIVGRTLKVSSVTDHVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKLDRTGIATS 501
E+ GR +KV VT+ +A+ + L R LM +L G
Sbjct: 314 -FELAGRPMKVGHVTERTDAS-SASSFLDSDELERTGIDLGTTGRLQLMARLAE-GTGLQ 370
Query: 502 IAGSLGVAPAVNGSAVNQQAISLXXXXXXXXXXXXXXXXXXXNMAAEFIGSPSECLLLKN 561
I + A ++GS AA ++C L N
Sbjct: 371 IPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQPLATQCFQLSN 430
Query: 562 MFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFESTEAAASAQRA 620
MF+P E + +D EI+ DV EEC+K+G V HIYVDK SA G VY++ S AA +A A
Sbjct: 431 MFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNA 490
Query: 621 MHMRWFARRLISAIFMKPEDYEAKF 645
+H RWFA ++I+A ++ Y F
Sbjct: 491 LHGRWFAGKMITAAYVPLPTYHNLF 515
Score = 166 (63.5 bits), Expect = 2.6e-65, Sum P(2) = 2.6e-65
Identities = 37/64 (57%), Positives = 43/64 (67%)
Query: 204 KEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR 260
K+K V EP PE RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRR
Sbjct: 133 KDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 192
Query: 261 SKGV 264
SKG+
Sbjct: 193 SKGI 196
>MGI|MGI:2157953 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
CleanEx:MM_RBM39 Genevestigator:Q8VH51
GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
Length = 530
Score = 517 (187.1 bits), Expect = 2.6e-65, Sum P(2) = 2.6e-65
Identities = 124/325 (38%), Positives = 173/325 (53%)
Query: 322 YIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLY 381
Y+EF DV SVP+AI L+GQ +LG P++V+ S+AEKN ++ A G G + +LY
Sbjct: 198 YVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKN--RAAAMANNLQKGSAGPM--RLY 253
Query: 382 VGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG 441
VG+LHFN+TE LR +FEPFG +E +QL +D ETG+ KG+GF+ F+ E AK A LNG
Sbjct: 254 VGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG 313
Query: 442 KLEIVGRTLKVSSVTDHVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKLDRTGIATS 501
E+ GR +KV VT+ +A+ + L R LM +L G
Sbjct: 314 -FELAGRPMKVGHVTERTDAS-SASSFLDSDELERTGIDLGTTGRLQLMARLAE-GTGLQ 370
Query: 502 IAGSLGVAPAVNGSAVNQQAISLXXXXXXXXXXXXXXXXXXXNMAAEFIGSPSECLLLKN 561
I + A ++GS AA ++C L N
Sbjct: 371 IPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQPLATQCFQLSN 430
Query: 562 MFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFESTEAAASAQRA 620
MF+P E + +D EI+ DV EEC+K+G V HIYVDK SA G VY++ S AA +A A
Sbjct: 431 MFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNA 490
Query: 621 MHMRWFARRLISAIFMKPEDYEAKF 645
+H RWFA ++I+A ++ Y F
Sbjct: 491 LHGRWFAGKMITAAYVPLPTYHNLF 515
Score = 166 (63.5 bits), Expect = 2.6e-65, Sum P(2) = 2.6e-65
Identities = 37/64 (57%), Positives = 43/64 (67%)
Query: 204 KEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR 260
K+K V EP PE RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRR
Sbjct: 133 KDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 192
Query: 261 SKGV 264
SKG+
Sbjct: 193 SKGI 196
>UNIPROTKB|F1MA64 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
Length = 530
Score = 517 (187.1 bits), Expect = 2.6e-65, Sum P(2) = 2.6e-65
Identities = 124/325 (38%), Positives = 173/325 (53%)
Query: 322 YIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLY 381
Y+EF DV SVP+AI L+GQ +LG P++V+ S+AEKN ++ A G G + +LY
Sbjct: 198 YVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKN--RAAAMANNLQKGSAGPM--RLY 253
Query: 382 VGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG 441
VG+LHFN+TE LR +FEPFG +E +QL +D ETG+ KG+GF+ F+ E AK A LNG
Sbjct: 254 VGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG 313
Query: 442 KLEIVGRTLKVSSVTDHVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKLDRTGIATS 501
E+ GR +KV VT+ +A+ + L R LM +L G
Sbjct: 314 -FELAGRPMKVGHVTERTDAS-SASSFLDSDELERTGIDLGTTGRLQLMARLAE-GTGLQ 370
Query: 502 IAGSLGVAPAVNGSAVNQQAISLXXXXXXXXXXXXXXXXXXXNMAAEFIGSPSECLLLKN 561
I + A ++GS AA ++C L N
Sbjct: 371 IPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQPLATQCFQLSN 430
Query: 562 MFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFESTEAAASAQRA 620
MF+P E + +D EI+ DV EEC+K+G V HIYVDK SA G VY++ S AA +A A
Sbjct: 431 MFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNA 490
Query: 621 MHMRWFARRLISAIFMKPEDYEAKF 645
+H RWFA ++I+A ++ Y F
Sbjct: 491 LHGRWFAGKMITAAYVPLPTYHNLF 515
Score = 166 (63.5 bits), Expect = 2.6e-65, Sum P(2) = 2.6e-65
Identities = 37/64 (57%), Positives = 43/64 (67%)
Query: 204 KEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR 260
K+K V EP PE RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRR
Sbjct: 133 KDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 192
Query: 261 SKGV 264
SKG+
Sbjct: 193 SKGI 196
>RGD|1310071 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
"centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
Length = 524
Score = 515 (186.3 bits), Expect = 4.2e-65, Sum P(2) = 4.2e-65
Identities = 128/328 (39%), Positives = 179/328 (54%)
Query: 322 YIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLY 381
Y+EF DV SVP+AI L+GQ +LG P++V+ S+AEKN ++ A G G + +LY
Sbjct: 198 YVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKN--RAAAMANNLQKGSAGPM--RLY 253
Query: 382 VGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG 441
VG+LHFN+TE LR +FEPFG +E +QL +D ETG+ KG+GF+ F+ E AK A LNG
Sbjct: 254 VGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG 313
Query: 442 KLEIVGRTLKVSSVTDHVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKL-DRTGIAT 500
E+ GR +KV VT+ +A+ + L R LM +L + TG
Sbjct: 314 -FELAGRPMKVGHVTERTDAS-SASSFLDSDELERTGIDLGTTGRLQLMARLAEGTG--- 368
Query: 501 SIAGSLGVAPAVNGSAVNQQAISLXXXXXXXXXXXXXXXXXXXNMAAEFIGSP--SECLL 558
L + PA + Q + SL +AA P ++C
Sbjct: 369 -----LQIPPAAQQAL--QMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLATQCFQ 421
Query: 559 LKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFESTEAAASA 617
L NMF+P E + +D EI+ DV EEC+K+G V HIYVDK SA G VY++ S AA +A
Sbjct: 422 LSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAA 481
Query: 618 QRAMHMRWFARRLISAIFMKPEDYEAKF 645
A+H RWFA ++I+A ++ Y F
Sbjct: 482 VNALHGRWFAGKMITAAYVPLPTYHNLF 509
Score = 166 (63.5 bits), Expect = 4.2e-65, Sum P(2) = 4.2e-65
Identities = 37/64 (57%), Positives = 43/64 (67%)
Query: 204 KEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR 260
K+K V EP PE RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRR
Sbjct: 133 KDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 192
Query: 261 SKGV 264
SKG+
Sbjct: 193 SKGI 196
>ZFIN|ZDB-GENE-040426-2852 [details] [associations]
symbol:rbm39a "RNA binding motif protein 39a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2852 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HSSP:P11940
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 HOGENOM:HOG000236253
KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
GeneTree:ENSGT00690000102089 EMBL:BX001056 EMBL:BC044487
IPI:IPI00498221 RefSeq:NP_001012304.1 UniGene:Dr.38353 SMR:Q803H1
Ensembl:ENSDART00000017973 Ensembl:ENSDART00000135435 GeneID:406251
KEGG:dre:406251 CTD:406251 NextBio:20817886 Uniprot:Q803H1
Length = 523
Score = 520 (188.1 bits), Expect = 5.4e-65, Sum P(2) = 5.4e-65
Identities = 127/325 (39%), Positives = 178/325 (54%)
Query: 322 YIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLY 381
YIEF D SVP+AI LSGQ LLG P++V+ S+AEKN ++ A G G + +LY
Sbjct: 194 YIEFVDSTSVPLAIGLSGQRLLGVPIIVQASQAEKN--RAAALANNLQKGSAGPM--RLY 249
Query: 382 VGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG 441
VG+LHFN+TE LR +FEPFG ++ +QL +D ETG+ KG+GF+ F+ E AK A LNG
Sbjct: 250 VGSLHFNITEDMLRGIFEPFGRIDSIQLMMDSETGRSKGYGFITFSDAECAKKALEQLNG 309
Query: 442 KLEIVGRTLKVSSVTDHVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKLDRTGIATS 501
E+ GR +KV VT+ TA+ + L R LM +L G
Sbjct: 310 -FELAGRPMKVGHVTERTDAS-TASSFLDNDELERTGIDLGTTGRLQLMARLAE-GTGLQ 366
Query: 502 IAGSLGVAPAVNGSAVNQQAISLXXXXXXXXXXXXXXXXXXXNMAAEFIGSPSECLLLKN 561
I + A ++GS V A + N+ ++ I + C L N
Sbjct: 367 IPPAAQQALQMSGSMV-AMAAATAAMNPGLSFNINVPTNQALNLPSQPIAT--HCFQLSN 423
Query: 562 MFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFESTEAAASAQRA 620
MF+P E D +++EIQ DV EEC+K+G V HIYVDK+SA G VY++ + AA +A A
Sbjct: 424 MFNPNSENDHGWEIEIQDDVIEECNKHGGVIHIYVDKKSAEGNVYVKCPTIPAAMAAVSA 483
Query: 621 MHMRWFARRLISAIFMKPEDYEAKF 645
+H RWF ++I+A ++ Y F
Sbjct: 484 LHGRWFGGKMITAAYVPLPTYHNLF 508
Score = 160 (61.4 bits), Expect = 5.4e-65, Sum P(2) = 5.4e-65
Identities = 35/64 (54%), Positives = 43/64 (67%)
Query: 204 KEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR 260
K++ V +P PE RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRR
Sbjct: 129 KDRSPVRQPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSAVGKVRDVRIISDRNSRR 188
Query: 261 SKGV 264
SKG+
Sbjct: 189 SKGI 192
>UNIPROTKB|E1BRU3 [details] [associations]
symbol:LOC100858247 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
Length = 529
Score = 514 (186.0 bits), Expect = 5.4e-65, Sum P(2) = 5.4e-65
Identities = 125/325 (38%), Positives = 175/325 (53%)
Query: 322 YIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLY 381
Y+EF DV SVP+AI L+GQ +LG P++V+ S+AEKN ++ A G G + +LY
Sbjct: 198 YVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKN--RAAAMANNLQKGSAGPM--RLY 253
Query: 382 VGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG 441
VG+LHFN+TE LR +FEPFG +E +QL +D ETG+ KG+GF+ F+ E AK A LNG
Sbjct: 254 VGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG 313
Query: 442 KLEIVGRTLKVSSVTDHVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKLDRTGIATS 501
E+ GR +KV VT+ +A+ + L R LM +L G
Sbjct: 314 -FELAGRPMKVGHVTERTDAS-SASSFLDSDELERTGIDLGTTGRLQLMARLAE-GTGLQ 370
Query: 502 IAGSLGVAPAVNGSAVNQQAISLXXXXXXXXXXXXXXXXXXXNMAAEFIGSPSECLLLKN 561
I + A ++GS L AA ++C L N
Sbjct: 371 IPPAAQQALQMSGSLAFGAVADLQTRLSQQNEVFFPIKTVLA-AAASVQPLATQCFQLSN 429
Query: 562 MFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFESTEAAASAQRA 620
MF+P E + +D EI+ DV EEC+K+G V HIYVDK SA G VY++ S AA +A A
Sbjct: 430 MFNPQTEEEAGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNA 489
Query: 621 MHMRWFARRLISAIFMKPEDYEAKF 645
+H RWFA ++I+A ++ Y + F
Sbjct: 490 LHGRWFAGKMITAAYVPLPTYHSLF 514
Score = 166 (63.5 bits), Expect = 5.4e-65, Sum P(2) = 5.4e-65
Identities = 37/64 (57%), Positives = 43/64 (67%)
Query: 204 KEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR 260
K+K V EP PE RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRR
Sbjct: 133 KDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 192
Query: 261 SKGV 264
SKG+
Sbjct: 193 SKGI 196
>UNIPROTKB|F6QIA5 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
Length = 525
Score = 507 (183.5 bits), Expect = 2.9e-64, Sum P(2) = 2.9e-64
Identities = 128/329 (38%), Positives = 179/329 (54%)
Query: 322 YIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLY 381
Y+EF DV SVP+AI L+GQ +LG P++V+ S+AEKN ++ A G G + +LY
Sbjct: 198 YVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKN--RAAAMANNLQKGSAGPM--RLY 253
Query: 382 VGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG 441
VG+LHFN+TE LR +FEPFG +E +QL +D ETG+ KG+GF+ F+ E AK A LNG
Sbjct: 254 VGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG 313
Query: 442 KLEIVGRTLKVSSVTDHVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKL-DRTGIAT 500
E+ GR +KV VT+ +A+ + L R LM +L + TG
Sbjct: 314 -FELAGRPMKVGHVTERTDAS-SASSFLDSDELERTGIDLGTTGRLQLMARLAEGTG--- 368
Query: 501 SIAGSLGVAPAVNGSAVNQQAISLXXXXXXXXXXXXXXXXXXXNMAAEFIGSP--SECLL 558
L + PA + Q + SL +AA P ++C
Sbjct: 369 -----LQIPPAAQQAL--QMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLATQCFQ 421
Query: 559 LKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFESTEAAASA 617
L NMF+P E + +D EI+ DV EEC+K+G V HIYVDK SA G VY++ S AA +A
Sbjct: 422 LSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAA 481
Query: 618 QRAMHMRWFAR-RLISAIFMKPEDYEAKF 645
A+H RWFA ++I+A ++ Y F
Sbjct: 482 VNALHGRWFAAGKMITAAYVPLPTYHNLF 510
Score = 166 (63.5 bits), Expect = 2.9e-64, Sum P(2) = 2.9e-64
Identities = 37/64 (57%), Positives = 43/64 (67%)
Query: 204 KEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR 260
K+K V EP PE RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRR
Sbjct: 133 KDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 192
Query: 261 SKGV 264
SKG+
Sbjct: 193 SKGI 196
>UNIPROTKB|F2Z5I2 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:CU210870
Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
Length = 525
Score = 507 (183.5 bits), Expect = 2.9e-64, Sum P(2) = 2.9e-64
Identities = 128/329 (38%), Positives = 179/329 (54%)
Query: 322 YIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLY 381
Y+EF DV SVP+AI L+GQ +LG P++V+ S+AEKN ++ A G G + +LY
Sbjct: 198 YVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKN--RAAAMANNLQKGSAGPM--RLY 253
Query: 382 VGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG 441
VG+LHFN+TE LR +FEPFG +E +QL +D ETG+ KG+GF+ F+ E AK A LNG
Sbjct: 254 VGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG 313
Query: 442 KLEIVGRTLKVSSVTDHVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKL-DRTGIAT 500
E+ GR +KV VT+ +A+ + L R LM +L + TG
Sbjct: 314 -FELAGRPMKVGHVTERTDAS-SASSFLDSDELERTGIDLGTTGRLQLMARLAEGTG--- 368
Query: 501 SIAGSLGVAPAVNGSAVNQQAISLXXXXXXXXXXXXXXXXXXXNMAAEFIGSP--SECLL 558
L + PA + Q + SL +AA P ++C
Sbjct: 369 -----LQIPPAAQQAL--QMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLATQCFQ 421
Query: 559 LKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFESTEAAASA 617
L NMF+P E + +D EI+ DV EEC+K+G V HIYVDK SA G VY++ S AA +A
Sbjct: 422 LSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAA 481
Query: 618 QRAMHMRWFAR-RLISAIFMKPEDYEAKF 645
A+H RWFA ++I+A ++ Y F
Sbjct: 482 VNALHGRWFAAGKMITAAYVPLPTYHNLF 510
Score = 166 (63.5 bits), Expect = 2.9e-64, Sum P(2) = 2.9e-64
Identities = 37/64 (57%), Positives = 43/64 (67%)
Query: 204 KEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR 260
K+K V EP PE RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRR
Sbjct: 133 KDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 192
Query: 261 SKGV 264
SKG+
Sbjct: 193 SKGI 196
>ZFIN|ZDB-GENE-050327-97 [details] [associations]
symbol:rbm39b "RNA binding motif protein 39b"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050327-97
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
HOGENOM:HOG000236253 GeneTree:ENSGT00690000102089 EMBL:CR550308
EMBL:BC091794 IPI:IPI00498276 RefSeq:NP_001014392.1
UniGene:Dr.76447 SMR:Q58ER0 Ensembl:ENSDART00000061328
GeneID:541556 KEGG:dre:541556 CTD:541556 InParanoid:Q58ER0
OMA:NCLASST NextBio:20879330 Uniprot:Q58ER0
Length = 539
Score = 502 (181.8 bits), Expect = 3.3e-63, Sum P(2) = 3.3e-63
Identities = 123/325 (37%), Positives = 176/325 (54%)
Query: 322 YIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLY 381
Y+EF D SVP+AI L+GQ +LG P++V+ S+AEKN ++ A G GA +LY
Sbjct: 212 YVEFVDSTSVPLAIGLTGQRVLGVPIIVQASQAEKN--RAAAMASMLQRG--GAGPMRLY 267
Query: 382 VGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG 441
VG+LHFN+TE LR +FEPFG +E +QL +D ETG+ KG+GF+ FA E AK A LNG
Sbjct: 268 VGSLHFNITEDMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAKKALEQLNG 327
Query: 442 KLEIVGRTLKVSSVTDHVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKLDRTGIATS 501
E+ GR +KV VT+ +A+ + L R LM +L G
Sbjct: 328 -FELAGRPMKVGHVTER-SDASSASSFLDNDELERTGIDLGTTGRLQLMARLAE-GTGLQ 384
Query: 502 IAGSLGVAPAVNGSAVNQQAISLXXXXXXXXXXXXXXXXXXXNMAAEFIGSPSECLLLKN 561
I + A ++GS ++ N+ + + + CL L N
Sbjct: 385 IPAAAKQALQMSGSV---SFGNMPNASATPPLIPNPGMNQAMNLPTQPLAT--HCLQLSN 439
Query: 562 MFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFESTEAAASAQRA 620
MF+P ME +P +D+EI+ DV EEC K+G V HIYVDK SA G VY++ + A + +
Sbjct: 440 MFNPQMENEPGWDIEIRDDVIEECRKHGGVIHIYVDKNSAQGNVYVKCPTIPVAMAVVSS 499
Query: 621 MHMRWFARRLISAIFMKPEDYEAKF 645
+H RWFA ++I+A ++ Y F
Sbjct: 500 LHGRWFAGKMITAAYVPLPTYHNLF 524
Score = 161 (61.7 bits), Expect = 3.3e-63, Sum P(2) = 3.3e-63
Identities = 35/64 (54%), Positives = 43/64 (67%)
Query: 204 KEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR 260
K+K V +P PE RD RTVF Q+ + RD+ +FFS GKVRDVR+I DRNSRR
Sbjct: 147 KDKSPVRQPIDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRMISDRNSRR 206
Query: 261 SKGV 264
SKG+
Sbjct: 207 SKGI 210
>FB|FBgn0031883 [details] [associations]
symbol:CG11266 species:7227 "Drosophila melanogaster"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 HSSP:Q60900
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 UniGene:Dm.7322 GeneID:33989
KEGG:dme:Dmel_CG11266 FlyBase:FBgn0031883 ChiTaRS:CG11266
GenomeRNAi:33989 NextBio:786302 EMBL:AY051860 RefSeq:NP_609095.1
RefSeq:NP_723243.1 SMR:Q9VM49 IntAct:Q9VM49 MINT:MINT-745605
STRING:Q9VM49 EnsemblMetazoa:FBtr0089636 EnsemblMetazoa:FBtr0089640
UCSC:CG11266-RA InParanoid:Q9VM49 Uniprot:Q9VM49
Length = 594
Score = 334 (122.6 bits), Expect = 1.7e-62, Sum P(3) = 1.7e-62
Identities = 83/206 (40%), Positives = 119/206 (57%)
Query: 322 YIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSA--GGTATGPYGAIDRK 379
YIEF D SV +A+ LSGQ LLG P+MV+ ++AEKN +Q+ A + TGP +
Sbjct: 282 YIEFDDPESVALALGLSGQRLLGVPIMVQHTQAEKNRLQNAAPAFQPKSHTGPM-----R 336
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
LYVG+LHFN+TE LR +FEPFG ++ +QL +D ETG+ KG+GF+ + + AK A L
Sbjct: 337 LYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQL 396
Query: 440 NGKLEIVGRTLKVSSVTDHVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKL-DRTGI 498
NG E+ GR +KV +VT+ + T S + L A R LM KL + G+
Sbjct: 397 NG-FELAGRLMKVGNVTERLDMNTT---SLDTDEMDRTGIDLGATGRLQLMFKLAEGAGL 452
Query: 499 AT-SIAGSLGVAPAVNGSAVNQQAIS 523
A A + +A A + + QQ ++
Sbjct: 453 AVPQAAANALLATAPQPAPLQQQEVA 478
Score = 222 (83.2 bits), Expect = 1.7e-62, Sum P(3) = 1.7e-62
Identities = 44/93 (47%), Positives = 62/93 (66%)
Query: 554 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRS-AGFVYLRFESTE 612
++C +L NMFDP ET+P +D+EI+ DV EEC+K+G V HI+VD S G VY++ ST
Sbjct: 483 TQCFILSNMFDPRTETNPTWDVEIRDDVLEECAKHGGVLHIHVDTISHTGTVYVKCPSTT 542
Query: 613 AAASAQRAMHMRWFARRLISAIFMKPEDYEAKF 645
A A A+H RWFA R+I+A ++ +Y F
Sbjct: 543 TAVLAVNALHGRWFAGRVITAAYVPVINYHTMF 575
Score = 130 (50.8 bits), Expect = 1.7e-62, Sum P(3) = 1.7e-62
Identities = 28/53 (52%), Positives = 34/53 (64%)
Query: 213 EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 264
E PE RD RTVF Q+ + RD+ EFFS GKVRDVRLI ++R KG+
Sbjct: 228 ELSPEERDARTVFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGI 280
Score = 62 (26.9 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
Identities = 18/64 (28%), Positives = 28/64 (43%)
Query: 204 KEKKEVVEPEADPERDQRTVFAY--QMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRS 261
K + + P P+ + Y + TE + F GK+ ++LIMD + RS
Sbjct: 316 KNRLQNAAPAFQPKSHTGPMRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRS 375
Query: 262 KGVG 265
KG G
Sbjct: 376 KGYG 379
Score = 46 (21.3 bits), Expect = 9.8e-16, Sum P(2) = 9.8e-16
Identities = 21/92 (22%), Positives = 37/92 (40%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 437
R ++ L + L + F G V V+L +T + KG +++F E A
Sbjct: 237 RTVFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFDDPESVALALG 296
Query: 438 ALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSA 469
L+G+ R L V + H + ++A
Sbjct: 297 -LSGQ-----RLLGVPIMVQHTQAEKNRLQNA 322
>UNIPROTKB|E1P5S2 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
Length = 373
Score = 517 (187.1 bits), Expect = 8.8e-61, Sum P(2) = 8.8e-61
Identities = 124/325 (38%), Positives = 173/325 (53%)
Query: 322 YIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLY 381
Y+EF DV SVP+AI L+GQ +LG P++V+ S+AEKN ++ A G G + +LY
Sbjct: 41 YVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKN--RAAAMANNLQKGSAGPM--RLY 96
Query: 382 VGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG 441
VG+LHFN+TE LR +FEPFG +E +QL +D ETG+ KG+GF+ F+ E AK A LNG
Sbjct: 97 VGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG 156
Query: 442 KLEIVGRTLKVSSVTDHVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKLDRTGIATS 501
E+ GR +KV VT+ +A+ + L R LM +L G
Sbjct: 157 -FELAGRPMKVGHVTERTDAS-SASSFLDSDELERTGIDLGTTGRLQLMARLAE-GTGLQ 213
Query: 502 IAGSLGVAPAVNGSAVNQQAISLXXXXXXXXXXXXXXXXXXXNMAAEFIGSPSECLLLKN 561
I + A ++GS AA ++C L N
Sbjct: 214 IPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQPLATQCFQLSN 273
Query: 562 MFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFESTEAAASAQRA 620
MF+P E + +D EI+ DV EEC+K+G V HIYVDK SA G VY++ S AA +A A
Sbjct: 274 MFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNA 333
Query: 621 MHMRWFARRLISAIFMKPEDYEAKF 645
+H RWFA ++I+A ++ Y F
Sbjct: 334 LHGRWFAGKMITAAYVPLPTYHNLF 358
Score = 123 (48.4 bits), Expect = 8.8e-61, Sum P(2) = 8.8e-61
Identities = 24/38 (63%), Positives = 29/38 (76%)
Query: 227 QMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 264
Q+ + RD+ EFFS GKVRDVR+I DRNSRRSKG+
Sbjct: 2 QLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGI 39
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 336 (123.3 bits), Expect = 2.9e-46, Sum P(2) = 2.9e-46
Identities = 76/178 (42%), Positives = 107/178 (60%)
Query: 322 YIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLY 381
Y+EF DV SVP+AI L+GQ +LG P++V+ S+AEKN ++ A G G + +LY
Sbjct: 198 YVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKN--RAAAMANNLQKGSAGPM--RLY 253
Query: 382 VGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG 441
VG+LHFN+TE LR +FEPFG +E +QL +D ETG+ KG+GF+ F+ E AK A LNG
Sbjct: 254 VGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG 313
Query: 442 KLEIVGRTLKVSSVTDHVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKL-DRTGI 498
E+ GR +KV VT+ +A+ + L R LM +L + TG+
Sbjct: 314 -FELAGRPMKVGHVTERTDAS-SASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGL 369
Score = 166 (63.5 bits), Expect = 2.9e-46, Sum P(2) = 2.9e-46
Identities = 37/64 (57%), Positives = 43/64 (67%)
Query: 204 KEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR 260
K+K V EP PE RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRR
Sbjct: 133 KDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 192
Query: 261 SKGV 264
SKG+
Sbjct: 193 SKGI 196
>UNIPROTKB|H0Y4X3 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
HGNC:HGNC:15923 ChiTaRS:RBM39 ProteinModelPortal:H0Y4X3
PRIDE:H0Y4X3 Ensembl:ENST00000448303 Bgee:H0Y4X3 Uniprot:H0Y4X3
Length = 337
Score = 203 (76.5 bits), Expect = 4.4e-45, Sum P(3) = 4.4e-45
Identities = 67/218 (30%), Positives = 92/218 (42%)
Query: 402 GPVELV--QLPLDIETGQCKGF--GFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 457
GP+ L L +I +G F +F+ E AK A LNG E+ GR +KV VT+
Sbjct: 121 GPMRLYVGSLHFNITEDMLRGIFEPFGRFSDSECAKKALEQLNG-FELAGRPMKVGHVTE 179
Query: 458 HVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAV 517
+A+ + L R LM +L G I + A ++GS
Sbjct: 180 RTDAS-SASSFLDSDELERTGIDLGTTGRLQLMARLAE-GTGLQIPPAAQQALQMSGSLA 237
Query: 518 NQQAISLXXXXXXXXXXXXXXXXXXXNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEI 577
AA ++C L NMF+P E + +D EI
Sbjct: 238 FGAVAEFSFVIDLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEI 297
Query: 578 QGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFESTEAA 614
+ DV EEC+K+G V HIYVDK SA G VY++ S AA
Sbjct: 298 KDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAA 335
Score = 202 (76.2 bits), Expect = 4.4e-45, Sum P(3) = 4.4e-45
Identities = 42/81 (51%), Positives = 57/81 (70%)
Query: 322 YIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLY 381
Y+EF DV SVP+AI L+GQ +LG P++V+ S+AEKN ++ A G G + +LY
Sbjct: 71 YVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKN--RAAAMANNLQKGSAGPM--RLY 126
Query: 382 VGNLHFNMTETQLRKLFEPFG 402
VG+LHFN+TE LR +FEPFG
Sbjct: 127 VGSLHFNITEDMLRGIFEPFG 147
Score = 166 (63.5 bits), Expect = 4.4e-45, Sum P(3) = 4.4e-45
Identities = 37/64 (57%), Positives = 43/64 (67%)
Query: 204 KEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR 260
K+K V EP PE RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRR
Sbjct: 6 KDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 65
Query: 261 SKGV 264
SKG+
Sbjct: 66 SKGI 69
>POMBASE|SPAC19G12.07c [details] [associations]
symbol:rsd1 "RNA-binding protein Rsd1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC19G12.07c EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724 GO:GO:0045292
TIGRFAMs:TIGR01622 PIR:T37994 RefSeq:NP_594422.2
EnsemblFungi:SPAC19G12.07c.1 GeneID:2542545 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 NextBio:20803597 Uniprot:O13845
Length = 603
Score = 236 (88.1 bits), Expect = 1.4e-44, Sum P(3) = 1.4e-44
Identities = 56/146 (38%), Positives = 84/146 (57%)
Query: 322 YIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAID-RKL 380
Y+EF SV AIALSG+ LLG PV+V+ +EAEKN + A A I +L
Sbjct: 285 YVEFCHEDSVQAAIALSGKRLLGLPVIVQLTEAEKN--RKAREAAELARAASAEIPFHRL 342
Query: 381 YVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALN 440
V N+HFN+T+ ++ +FEPFG +E V L D + + KGFG++Q+ A+ A +N
Sbjct: 343 CVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRNPISARNALEKMN 401
Query: 441 GKLEIVGRTLKVSSVTDHVGTQDTAA 466
G ++ GR ++V D T+ T++
Sbjct: 402 G-FDLAGRNMRVCLGNDKFTTETTSS 426
Score = 207 (77.9 bits), Expect = 1.4e-44, Sum P(3) = 1.4e-44
Identities = 41/93 (44%), Positives = 57/93 (61%)
Query: 554 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECS-KYGRVKHIYVDKRSAGFVYLRFESTE 612
S C LL+NMF+PA ET P++ E++ DV+EEC KYG+V HI V G ++++FE+ +
Sbjct: 505 SRCALLENMFNPAEETSPNWVQELEQDVKEECDEKYGKVVHIAVVPNELGQIFVKFENAD 564
Query: 613 AAASAQRAMHMRWFARRLISAIFMKPEDYEAKF 645
A A +H RWF R I A + DY KF
Sbjct: 565 FAEKAITGLHQRWFGGRTIKASILPETDYYFKF 597
Score = 138 (53.6 bits), Expect = 1.4e-44, Sum P(3) = 1.4e-44
Identities = 26/60 (43%), Positives = 40/60 (66%)
Query: 214 ADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDD 273
++ ERD+RTVF Q+ + T R++Y+FF +AG VRD +++ D+ S RSKGV +D
Sbjct: 233 SEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHED 292
Score = 92 (37.4 bits), Expect = 9.3e-19, Sum P(2) = 9.3e-19
Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 437
R ++V L +T +L FE GPV Q+ D +G+ KG +V+F + +AA
Sbjct: 240 RTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAA-I 298
Query: 438 ALNGK 442
AL+GK
Sbjct: 299 ALSGK 303
Score = 46 (21.3 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 11/47 (23%), Positives = 26/47 (55%)
Query: 580 DVEEECSKYGRVKHIYVDK----RSAGFVYLRFESTEAAASAQRAMH 622
DV+ +G ++ +++ + RS GF Y+++ + +A +A M+
Sbjct: 355 DVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMN 401
>UNIPROTKB|I3LPP8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 OMA:VTERLDG TIGRFAMs:TIGR01622
GeneTree:ENSGT00690000102089 Ensembl:ENSSSCT00000022566
Uniprot:I3LPP8
Length = 423
Score = 306 (112.8 bits), Expect = 4.1e-42, Sum P(2) = 4.1e-42
Identities = 79/206 (38%), Positives = 118/206 (57%)
Query: 322 YIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLV--QSNTSAGGTATGPYGAIDRK 379
Y+EF ++ SVP+AI L+GQ LLG P++V+ S+AEKN + +N GT GP +
Sbjct: 202 YVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGTG-GPM-----R 255
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
LYVG+LHFN+TE LR +FEPFG ++ + L D +TG+ KG+GF+ F+ E A+ A L
Sbjct: 256 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 315
Query: 440 NGKLEIVGRTLKVSSVTDHV-GTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKL-DRTG 497
NG E+ GR +++ VT+ + G+ D +A R LM KL + +G
Sbjct: 316 NG-FELAGRPMRIGHVTERLDGSTDITFPDGDQELDLG-----SAGGRLQLMAKLAEGSG 369
Query: 498 IATSIAGSLGVAPAVNGSAVNQQAIS 523
I +L + AV A+N A++
Sbjct: 370 IQLPTT-ALQLNGAVPLGALNPAALT 394
Score = 167 (63.8 bits), Expect = 4.1e-42, Sum P(2) = 4.1e-42
Identities = 36/65 (55%), Positives = 44/65 (67%)
Query: 203 YKEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSR 259
++EK V EP PE RD RTVF Q+ + RD+ +FFS GKVRDVR+I DRNSR
Sbjct: 136 FREKSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSR 195
Query: 260 RSKGV 264
RSKG+
Sbjct: 196 RSKGI 200
>UNIPROTKB|E2QVA8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01622 ProteinModelPortal:E2QVA8
Ensembl:ENSCAFT00000017824 Uniprot:E2QVA8
Length = 440
Score = 306 (112.8 bits), Expect = 3.9e-41, Sum P(2) = 3.9e-41
Identities = 75/198 (37%), Positives = 111/198 (56%)
Query: 322 YIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLY 381
Y+EF ++ SVP+AI L+GQ LLG P++V+ S+AEKN + + A G G + +LY
Sbjct: 212 YVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA--MANNLQKGSSGPM--RLY 267
Query: 382 VGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG 441
VG+LHFN+TE LR +FEPFG ++ + L D +TG+ KG+GF+ F+ E A+ A LNG
Sbjct: 268 VGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNG 327
Query: 442 KLEIVGRTLKVSSVTDHV--GTQDTA--AKSAXXXXXXXXXLALNAQSRALLMQKLDRTG 497
E+ GR ++V VT+ + GT T + L L A+ +L T
Sbjct: 328 -FELAGRPMRVGHVTERLDGGTDITFPDGEQELDLGSAGGRLQLMAKLAEGSGIQLPTTA 386
Query: 498 IATSIAGSLGVAPAVNGS 515
A + A A +NG+
Sbjct: 387 AAAAAAAQAAAALQLNGT 404
Score = 167 (63.8 bits), Expect = 3.9e-41, Sum P(2) = 3.9e-41
Identities = 36/65 (55%), Positives = 44/65 (67%)
Query: 203 YKEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSR 259
++EK V EP PE RD RTVF Q+ + RD+ +FFS GKVRDVR+I DRNSR
Sbjct: 146 FREKSPVREPIDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSR 205
Query: 260 RSKGV 264
RSKG+
Sbjct: 206 RSKGI 210
>DICTYBASE|DDB_G0283687 [details] [associations]
symbol:DDB_G0283687 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0283687 EMBL:AAFI02000056 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K13091
RefSeq:XP_638966.1 ProteinModelPortal:Q54QQ7
EnsemblProtists:DDB0233350 GeneID:8624212 KEGG:ddi:DDB_G0283687
InParanoid:Q54QQ7 OMA:VDINIDE Uniprot:Q54QQ7
Length = 727
Score = 211 (79.3 bits), Expect = 7.1e-41, Sum P(3) = 7.1e-41
Identities = 35/92 (38%), Positives = 61/92 (66%)
Query: 554 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEA 613
S CL+L+NMFDP ET+ ++D +I + ECS +G++ HIY+DK + G +Y+R+++ E+
Sbjct: 634 STCLILRNMFDPETETEENWDQDILSETHAECSTFGKIMHIYLDKNTKGCIYIRYDNNES 693
Query: 614 AASAQRAMHMRWFARRLISAIFMKPEDYEAKF 645
A + +H RWF+++ I A + Y+ +F
Sbjct: 694 PLKAIQKLHGRWFSKKQIIAELVPEPVYKLQF 725
Score = 209 (78.6 bits), Expect = 7.1e-41, Sum P(3) = 7.1e-41
Identities = 49/143 (34%), Positives = 83/143 (58%)
Query: 322 YIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLY 381
Y+EF V AIALSG +L GQ ++V + EK +++SN+ TG G + ++Y
Sbjct: 311 YVEFSQKEMVDKAIALSGSVLDGQQILVHSIQPEKKVIKSNS------TGSSGG-ESRIY 363
Query: 382 VGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG 441
VG +H ++ E Q+R +F+P+G ++ + + + G K + F+QF E AK A + LNG
Sbjct: 364 VGYIHLSVAEEQIRVIFQPYGDIDFINI--HTKPGISK-YAFIQFKTQESAKRAITELNG 420
Query: 442 KLEIVGRTLKVSSVTDHVGTQDT 464
E++G+ LK++ V+ + T
Sbjct: 421 -YELMGKNLKLNMVSQEKNSNGT 442
Score = 134 (52.2 bits), Expect = 7.1e-41, Sum P(3) = 7.1e-41
Identities = 27/54 (50%), Positives = 37/54 (68%)
Query: 212 PEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
PE D E DQRTVF ++ E+D+ + FS+AG V +VRLI D+ ++R KGVG
Sbjct: 257 PEPDEESDQRTVFVSKLSQNIVEKDLSDLFSQAGTVLNVRLITDKVTKRMKGVG 310
Score = 106 (42.4 bits), Expect = 2.1e-20, Sum P(2) = 2.1e-20
Identities = 34/96 (35%), Positives = 49/96 (51%)
Query: 361 SNTSAGGTATGPYGAID-RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCK 419
S TS+ T P D R ++V L N+ E L LF G V V+L D T + K
Sbjct: 248 STTSSSSTLPEPDEESDQRTVFVSKLSQNIVEKDLSDLFSQAGTVLNVRLITDKVTKRMK 307
Query: 420 GFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 455
G G+V+F+Q E A AL+G + + G+ + V S+
Sbjct: 308 GVGYVEFSQKEMVDKA-IALSGSV-LDGQQILVHSI 341
>UNIPROTKB|F1MY46 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:DAAA02028045 OMA:VTERLDG
TIGRFAMs:TIGR01622 GeneTree:ENSGT00690000102089 IPI:IPI00693162
UniGene:Bt.91499 Ensembl:ENSBTAT00000023525 Uniprot:F1MY46
Length = 463
Score = 306 (112.8 bits), Expect = 1.4e-40, Sum P(2) = 1.4e-40
Identities = 84/247 (34%), Positives = 126/247 (51%)
Query: 322 YIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLY 381
Y+EF ++ SVP+AI L+GQ LLG P++V+ S+AEKN + + A G G + +LY
Sbjct: 226 YVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA--MANNLQKGSGGPV--RLY 281
Query: 382 VGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG 441
VG+LH N+TE LR + EPFG ++ + L D ETG+ KG+GF+ F+ E A+ A LNG
Sbjct: 282 VGSLHCNITEDMLRGILEPFGKIDNIVLMKDSETGRSKGYGFITFSDSECARRALEQLNG 341
Query: 442 KLEIVGRTLKVSSVTDHVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKL-DRTGIA- 499
E+ GR +++ VT+ D L +A LM KL + +GI
Sbjct: 342 -FELAGRPMRIGHVTER---PDGGTDITFPDGDQELDLG-SAGGHLQLMAKLAEGSGIQL 396
Query: 500 -TSIAGSLGVAPAVNGSAVNQQAISLXXXXXXXXXXXXXXXXXXXNMAAEFIGSPSECLL 558
T+ A + VA A A Q ++ N+A++ I S +C
Sbjct: 397 PTTTAAAAAVAQAAAAQAAALQ-LNGADPLGALNPAALTALSPALNLASQAIAS--QCFQ 453
Query: 559 LKNMFDP 565
L ++F P
Sbjct: 454 LSSLFTP 460
Score = 167 (63.8 bits), Expect = 1.4e-40, Sum P(2) = 1.4e-40
Identities = 36/65 (55%), Positives = 44/65 (67%)
Query: 203 YKEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSR 259
++EK V EP PE RD RTVF Q+ + RD+ +FFS GKVRDVR+I DRNSR
Sbjct: 160 FREKSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSR 219
Query: 260 RSKGV 264
RSKG+
Sbjct: 220 RSKGI 224
>UNIPROTKB|Q86U06 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 eggNOG:COG0724 EMBL:AL135998
EMBL:AF087905 EMBL:AF275678 EMBL:AK001344 EMBL:AL834198
EMBL:BX161440 EMBL:BC002566 EMBL:BC024208 IPI:IPI00168431
IPI:IPI00376960 IPI:IPI00376962 IPI:IPI00376963 IPI:IPI00386141
RefSeq:NP_001070819.1 RefSeq:NP_001070820.1 RefSeq:NP_060577.3
UniGene:Hs.4997 PDB:2CQ4 PDB:2DNZ PDBsum:2CQ4 PDBsum:2DNZ
ProteinModelPortal:Q86U06 SMR:Q86U06 IntAct:Q86U06
MINT:MINT-1382566 STRING:Q86U06 PhosphoSite:Q86U06 DMDM:34925229
PaxDb:Q86U06 PRIDE:Q86U06 DNASU:55147 Ensembl:ENST00000346528
Ensembl:ENST00000359890 Ensembl:ENST00000399922 GeneID:55147
KEGG:hsa:55147 UCSC:uc001whg.3 UCSC:uc001whh.3 UCSC:uc001whi.3
UCSC:uc001whk.1 CTD:55147 GeneCards:GC14M023369 HGNC:HGNC:20155
HPA:HPA004144 neXtProt:NX_Q86U06 PharmGKB:PA134974852
HOVERGEN:HBG057646 InParanoid:Q86U06 OMA:VTERLDG PhylomeDB:Q86U06
ChiTaRS:RBM23 EvolutionaryTrace:Q86U06 GenomeRNAi:55147
NextBio:58862 ArrayExpress:Q86U06 Bgee:Q86U06 CleanEx:HS_RBM23
Genevestigator:Q86U06 GermOnline:ENSG00000100461 TIGRFAMs:TIGR01622
Uniprot:Q86U06
Length = 439
Score = 303 (111.7 bits), Expect = 1.6e-40, Sum P(2) = 1.6e-40
Identities = 75/197 (38%), Positives = 110/197 (55%)
Query: 322 YIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLY 381
Y+EF ++ SVP+AI L+GQ LLG P++V+ S+AEKN + + A G G + +LY
Sbjct: 211 YVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA--MANNLQKGNGGPM--RLY 266
Query: 382 VGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG 441
VG+LHFN+TE LR +FEPFG ++ + L D +TG+ KG+GF+ F+ E A+ A LNG
Sbjct: 267 VGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNG 326
Query: 442 KLEIVGRTLKVSSVTDHVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKL-DRTGIAT 500
E+ GR ++V VT+ + D L +A R LM KL + GI
Sbjct: 327 -FELAGRPMRVGHVTERL---DGGTDITFPDGDQELDLG-SAGGRFQLMAKLAEGAGIQL 381
Query: 501 SIAGSLGVAPAVNGSAV 517
+ A A +A+
Sbjct: 382 PSTAAAAAAAAAQAAAL 398
Score = 167 (63.8 bits), Expect = 1.6e-40, Sum P(2) = 1.6e-40
Identities = 36/65 (55%), Positives = 44/65 (67%)
Query: 203 YKEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSR 259
++EK V EP PE RD RTVF Q+ + RD+ +FFS GKVRDVR+I DRNSR
Sbjct: 145 FREKSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSR 204
Query: 260 RSKGV 264
RSKG+
Sbjct: 205 RSKGI 209
>ASPGD|ASPL0000055210 [details] [associations]
symbol:AN0917 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
OMA:YVEFRTI Uniprot:Q5BEW3
Length = 552
Score = 275 (101.9 bits), Expect = 1.3e-38, Sum P(3) = 1.3e-38
Identities = 65/153 (42%), Positives = 93/153 (60%)
Query: 322 YIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNT--SAGGTATGPYGAIDRK 379
Y+EF D SV AI L+GQ LLG P++ + +EAEKN N+ S+G + P+ +
Sbjct: 219 YVEFKDESSVAPAIQLTGQKLLGIPIIAQLTEAEKNRQARNSEASSGNKHSAPF----HR 274
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
LYVGN+HF++ E L+ +FEPFG +E VQL D ETG+ +G+GFVQF A+ A +
Sbjct: 275 LYVGNIHFSIDENDLQSVFEPFGELEFVQLQKD-ETGRSRGYGFVQFRDPNQAREALEKM 333
Query: 440 NGKLEIVGRTLKVSSVTDHV---GTQDTAAKSA 469
NG ++ GR ++V D TQ T ++SA
Sbjct: 334 NG-YDLGGRAIRVGLGNDKFTPENTQRTQSQSA 365
Score = 121 (47.7 bits), Expect = 1.3e-38, Sum P(3) = 1.3e-38
Identities = 24/65 (36%), Positives = 41/65 (63%)
Query: 212 PEA-DPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMM 270
PE + ERD+RT+F Q+ + +++ FF K G V++ +++ DR S RSKGVG +
Sbjct: 164 PELNEDERDRRTIFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGY-VEF 222
Query: 271 RDDGN 275
+D+ +
Sbjct: 223 KDESS 227
Score = 114 (45.2 bits), Expect = 1.3e-38, Sum P(3) = 1.3e-38
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 576 EIQGDVEEECS-KYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISA 633
E++ DV EC KYG V HI +D S G +YL+F+ + +A + ++ R+F R I+A
Sbjct: 476 ELEDDVRAECEEKYGHVVHIALDPNSQGDIYLKFDRVQGGENAIKGLNGRFFGGRQITA 534
Score = 83 (34.3 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 23/80 (28%), Positives = 43/80 (53%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 437
R ++V L + +L FE GPV+ Q+ D +G+ KG G+V+F E + A
Sbjct: 174 RTIFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKD-ESSVAPAI 232
Query: 438 ALNGKLEIVGRTLKVSSVTD 457
L G+ +++G + ++ +T+
Sbjct: 233 QLTGQ-KLLGIPI-IAQLTE 250
>UNIPROTKB|G3XAP0 [details] [associations]
symbol:RBM23 "RNA binding motif protein 23, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 EMBL:AL135998 UniGene:Hs.4997
HGNC:HGNC:20155 ChiTaRS:RBM23 TIGRFAMs:TIGR01622
ProteinModelPortal:G3XAP0 SMR:G3XAP0 Ensembl:ENST00000542016
ArrayExpress:G3XAP0 Bgee:G3XAP0 Uniprot:G3XAP0
Length = 269
Score = 303 (111.7 bits), Expect = 5.7e-38, Sum P(2) = 5.7e-38
Identities = 75/197 (38%), Positives = 110/197 (55%)
Query: 322 YIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLY 381
Y+EF ++ SVP+AI L+GQ LLG P++V+ S+AEKN + + A G G + +LY
Sbjct: 41 YVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA--MANNLQKGNGGPM--RLY 96
Query: 382 VGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG 441
VG+LHFN+TE LR +FEPFG ++ + L D +TG+ KG+GF+ F+ E A+ A LNG
Sbjct: 97 VGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNG 156
Query: 442 KLEIVGRTLKVSSVTDHVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKL-DRTGIAT 500
E+ GR ++V VT+ + D L +A R LM KL + GI
Sbjct: 157 -FELAGRPMRVGHVTERL---DGGTDITFPDGDQELDLG-SAGGRFQLMAKLAEGAGIQL 211
Query: 501 SIAGSLGVAPAVNGSAV 517
+ A A +A+
Sbjct: 212 PSTAAAAAAAAAQAAAL 228
Score = 120 (47.3 bits), Expect = 5.7e-38, Sum P(2) = 5.7e-38
Identities = 23/38 (60%), Positives = 29/38 (76%)
Query: 227 QMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 264
Q+ + RD+ +FFS GKVRDVR+I DRNSRRSKG+
Sbjct: 2 QLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGI 39
>GENEDB_PFALCIPARUM|MAL13P1.120 [details] [associations]
symbol:MAL13P1.120 "splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 224 (83.9 bits), Expect = 4.3e-37, Sum P(3) = 4.3e-37
Identities = 53/139 (38%), Positives = 82/139 (58%)
Query: 322 YIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLY 381
Y+EFY +V A+A +G +L +P+ ++ S+AEKN ++ +A P I KLY
Sbjct: 533 YVEFYTQEAVIKALAANGMMLKNRPIKIQSSQAEKN--RAAKAAKHQPIDP-NDIPLKLY 589
Query: 382 VGNLH---FNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
+G L N+TE +L++LF PFG + V++ D TG+ KGFGF+QF + A A +
Sbjct: 590 IGGLLGPLSNITEQELKQLFNPFGDILDVEIHRDPYTGKSKGFGFIQFHKASEAIEALTV 649
Query: 439 LNGKLEIVGRTLKVSSVTD 457
+NG +E+ GR +KV D
Sbjct: 650 MNG-MEVAGREIKVGYAQD 667
Score = 148 (57.2 bits), Expect = 4.3e-37, Sum P(3) = 4.3e-37
Identities = 31/90 (34%), Positives = 59/90 (65%)
Query: 557 LLLKNMF---DPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFESTE 612
L+L NMF D + +DPDF +I DV+EECSKYG+V +I++D ++ G +Y+++ + +
Sbjct: 769 LVLSNMFSSNDENIGSDPDFFNDILEDVKEECSKYGKVVNIWLDTKNIDGKIYIKYSNND 828
Query: 613 AAASAQRAMHMRWFARRLISAIFMKPEDYE 642
+ + + ++ R+F LI+A F+ + ++
Sbjct: 829 ESLKSFQFLNGRYFGGSLINAYFISNDVWD 858
Score = 147 (56.8 bits), Expect = 4.3e-37, Sum P(3) = 4.3e-37
Identities = 30/62 (48%), Positives = 43/62 (69%)
Query: 204 KEKKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSK-AGKVRDVRLIMDRNSRRSK 262
+E++ + E + +RD TV + LKA ERD+YEFFS+ AGKVRD++ I D+ S +SK
Sbjct: 470 REERRLKEEMEEAKRDDLTVLVLNLDLKADERDIYEFFSEVAGKVRDIQCIKDQRSGKSK 529
Query: 263 GV 264
GV
Sbjct: 530 GV 531
Score = 71 (30.1 bits), Expect = 6.9e-10, Sum P(3) = 6.9e-10
Identities = 28/94 (29%), Positives = 44/94 (46%)
Query: 377 DRKLYVGNLHFNMTETQLRKLF-EPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAA 435
D + V NL E + + F E G V +Q D +G+ KG +V+F E A
Sbjct: 486 DLTVLVLNLDLKADERDIYEFFSEVAGKVRDIQCIKDQRSGKSKGVAYVEFYTQEAVIKA 545
Query: 436 QSALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSA 469
+A NG + + R +K+ S ++ AAK+A
Sbjct: 546 LAA-NGMM-LKNRPIKIQSSQ---AEKNRAAKAA 574
Score = 56 (24.8 bits), Expect = 6.2e-08, Sum P(2) = 6.2e-08
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 229 PLK-ATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
PL TE+++ + F+ G + DV + D + +SKG G
Sbjct: 596 PLSNITEQELKQLFNPFGDILDVEIHRDPYTGKSKGFG 633
Score = 45 (20.9 bits), Expect = 1.6e-26, Sum P(3) = 1.6e-26
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 256 RNSRRSKGVGNAIMMRDDGNTLH 278
+NS RSK + DD N +H
Sbjct: 188 KNSIRSKSSNSKTKKEDDDNNIH 210
Score = 39 (18.8 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 599 RSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDY 641
+S GF +++F A A M+ A R I + + Y
Sbjct: 628 KSKGFGFIQFHKASEAIEALTVMNGMEVAGREIKVGYAQDSKY 670
>UNIPROTKB|Q8IE99 [details] [associations]
symbol:MAL13P1.120 "Splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 224 (83.9 bits), Expect = 4.3e-37, Sum P(3) = 4.3e-37
Identities = 53/139 (38%), Positives = 82/139 (58%)
Query: 322 YIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLY 381
Y+EFY +V A+A +G +L +P+ ++ S+AEKN ++ +A P I KLY
Sbjct: 533 YVEFYTQEAVIKALAANGMMLKNRPIKIQSSQAEKN--RAAKAAKHQPIDP-NDIPLKLY 589
Query: 382 VGNLH---FNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
+G L N+TE +L++LF PFG + V++ D TG+ KGFGF+QF + A A +
Sbjct: 590 IGGLLGPLSNITEQELKQLFNPFGDILDVEIHRDPYTGKSKGFGFIQFHKASEAIEALTV 649
Query: 439 LNGKLEIVGRTLKVSSVTD 457
+NG +E+ GR +KV D
Sbjct: 650 MNG-MEVAGREIKVGYAQD 667
Score = 148 (57.2 bits), Expect = 4.3e-37, Sum P(3) = 4.3e-37
Identities = 31/90 (34%), Positives = 59/90 (65%)
Query: 557 LLLKNMF---DPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFESTE 612
L+L NMF D + +DPDF +I DV+EECSKYG+V +I++D ++ G +Y+++ + +
Sbjct: 769 LVLSNMFSSNDENIGSDPDFFNDILEDVKEECSKYGKVVNIWLDTKNIDGKIYIKYSNND 828
Query: 613 AAASAQRAMHMRWFARRLISAIFMKPEDYE 642
+ + + ++ R+F LI+A F+ + ++
Sbjct: 829 ESLKSFQFLNGRYFGGSLINAYFISNDVWD 858
Score = 147 (56.8 bits), Expect = 4.3e-37, Sum P(3) = 4.3e-37
Identities = 30/62 (48%), Positives = 43/62 (69%)
Query: 204 KEKKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSK-AGKVRDVRLIMDRNSRRSK 262
+E++ + E + +RD TV + LKA ERD+YEFFS+ AGKVRD++ I D+ S +SK
Sbjct: 470 REERRLKEEMEEAKRDDLTVLVLNLDLKADERDIYEFFSEVAGKVRDIQCIKDQRSGKSK 529
Query: 263 GV 264
GV
Sbjct: 530 GV 531
Score = 71 (30.1 bits), Expect = 6.9e-10, Sum P(3) = 6.9e-10
Identities = 28/94 (29%), Positives = 44/94 (46%)
Query: 377 DRKLYVGNLHFNMTETQLRKLF-EPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAA 435
D + V NL E + + F E G V +Q D +G+ KG +V+F E A
Sbjct: 486 DLTVLVLNLDLKADERDIYEFFSEVAGKVRDIQCIKDQRSGKSKGVAYVEFYTQEAVIKA 545
Query: 436 QSALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSA 469
+A NG + + R +K+ S ++ AAK+A
Sbjct: 546 LAA-NGMM-LKNRPIKIQSSQ---AEKNRAAKAA 574
Score = 56 (24.8 bits), Expect = 6.2e-08, Sum P(2) = 6.2e-08
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 229 PLK-ATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
PL TE+++ + F+ G + DV + D + +SKG G
Sbjct: 596 PLSNITEQELKQLFNPFGDILDVEIHRDPYTGKSKGFG 633
Score = 45 (20.9 bits), Expect = 1.6e-26, Sum P(3) = 1.6e-26
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 256 RNSRRSKGVGNAIMMRDDGNTLH 278
+NS RSK + DD N +H
Sbjct: 188 KNSIRSKSSNSKTKKEDDDNNIH 210
Score = 39 (18.8 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 599 RSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDY 641
+S GF +++F A A M+ A R I + + Y
Sbjct: 628 KSKGFGFIQFHKASEAIEALTVMNGMEVAGREIKVGYAQDSKY 670
>WB|WBGene00021921 [details] [associations]
symbol:Y55F3AM.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0002009 "morphogenesis
of an epithelium" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003723
GO:GO:0040035 EMBL:FO081813 HSSP:Q14103 TIGRFAMs:TIGR01622
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 GeneID:176922 KEGG:cel:CELE_Y55F3AM.3
UCSC:Y55F3AM.3a CTD:176922 NextBio:894594 RefSeq:NP_500025.1
ProteinModelPortal:Q9N368 SMR:Q9N368 IntAct:Q9N368 STRING:Q9N368
PRIDE:Q9N368 EnsemblMetazoa:Y55F3AM.3a WormBase:Y55F3AM.3a
InParanoid:Q9N368 ArrayExpress:Q9N368 Uniprot:Q9N368
Length = 580
Score = 193 (73.0 bits), Expect = 4.3e-36, Sum P(3) = 4.3e-36
Identities = 57/196 (29%), Positives = 96/196 (48%)
Query: 322 YIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTA--TGPYGAIDRK 379
Y+EF+D SVP+ +AL+GQ L+G P+ ++ + AE+N +N+S T P
Sbjct: 215 YVEFWDEESVPLGLALNGQRLMGAPLQIQRTCAERNRA-ANSSVASTLGFVAPGNKGPTH 273
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
+ V NLH + E +R +FE FG +E + L +D + +GF + F + A+ + L
Sbjct: 274 VLVENLHPKIDEKMIRDIFESFGRIEKIDLEVD-SNRENRGFATITFRNADDAQKSCEQL 332
Query: 440 NGKLEIVGRTLKVS----SVTDHVGTQDTAA-KSAXXXXXXXXXLALNAQSRALLMQKLD 494
N E+ GR +++S S V ++ + + + +L A R LM KL
Sbjct: 333 NN-FELAGRCIRLSIKQESQAPAVKKEEASIHQRSLDDVGDRQGFSLGAGGRQQLMAKLA 391
Query: 495 R-TGIATSIAGSLGVA 509
+ TG + S +A
Sbjct: 392 QGTGSGMELTASAQMA 407
Score = 191 (72.3 bits), Expect = 4.3e-36, Sum P(3) = 4.3e-36
Identities = 44/108 (40%), Positives = 64/108 (59%)
Query: 545 MAAEFIGS---PS---ECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDK 598
MAA+ G PS +C LL NMFDP+ ET+P +D +I+ DV E+C +G H++VDK
Sbjct: 406 MAAQHAGHSQIPSIATQCFLLSNMFDPSKETEPAWDHDIREDVIEQCLAHGGALHVFVDK 465
Query: 599 RSA-GFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEAKF 645
S G VY++ S A A A+H RWF+ ++I+A ++ Y F
Sbjct: 466 GSEQGNVYVKCPSIVIAHQAVSALHGRWFSGKVITANYVPVNSYHDLF 513
Score = 122 (48.0 bits), Expect = 4.3e-36, Sum P(3) = 4.3e-36
Identities = 28/59 (47%), Positives = 36/59 (61%)
Query: 206 KKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 264
K +E A+ ERDQRT+ Q+ RD+ EFFS G VRDVR+I D + RSKG+
Sbjct: 156 KNAKLELTAE-ERDQRTLLIMQIARDTRPRDLEEFFSAVGAVRDVRIITDSRTGRSKGI 213
Score = 69 (29.3 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 21/75 (28%), Positives = 36/75 (48%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 437
R L + + + L + F G V V++ D TG+ KG +V+F E +
Sbjct: 170 RTLLIMQIARDTRPRDLEEFFSAVGAVRDVRIITDSRTGRSKGICYVEFWD-EESVPLGL 228
Query: 438 ALNGKLEIVGRTLKV 452
ALNG+ ++G L++
Sbjct: 229 ALNGQ-RLMGAPLQI 242
Score = 50 (22.7 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 231 KATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSC 280
K E+ + + F G++ + L +D N R ++G I R+ + SC
Sbjct: 282 KIDEKMIRDIFESFGRIEKIDLEVDSN-RENRGFAT-ITFRNADDAQKSC 329
>UNIPROTKB|J9P448 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
OMA:VTERLDG TIGRFAMs:TIGR01622 GeneTree:ENSGT00690000102089
EMBL:AAEX03005604 Ensembl:ENSCAFT00000048864 Uniprot:J9P448
Length = 458
Score = 258 (95.9 bits), Expect = 2.1e-33, Sum P(2) = 2.1e-33
Identities = 79/246 (32%), Positives = 119/246 (48%)
Query: 322 YIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLY 381
Y+EF ++ SVP+AI L+GQ LLG P++V+ S+AEKN + + A G G + +LY
Sbjct: 224 YVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA--MANNLQKGSSGPM--RLY 279
Query: 382 VGNLHFNMTETQLRKLFEPFGPVEL-VQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALN 440
VG+LHFN+TE LR +FEPFG V VQ + T + +F+ E A+ A LN
Sbjct: 280 VGSLHFNITEDMLRGIFEPFGKVSRNVQYTNESGTIKSNNRAHTKFSDSECARRALEQLN 339
Query: 441 GKLEIVGRTLKVSSVTDHVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKL-DRTGIA 499
G E+ GR ++V VT+ + D L +A R LM KL + +GI
Sbjct: 340 G-FELAGRPMRVGHVTERL---DGGTDITFPDGEQELDLG-SAGGRLQLMAKLAEGSGIQ 394
Query: 500 TSIAGSLGVAPAVNGSAVNQQAISLXXXXXXXXXXXXXXXXXXXNMAAEFIGSPSECLLL 559
+ A A +A+ ++ N+A++ I S +C L
Sbjct: 395 LPTTAAAAAAAAQAAAALQ---LNGTVPLGGLNPAALTALSPALNLASQAIAS--QCFQL 449
Query: 560 KNMFDP 565
++F P
Sbjct: 450 SSLFTP 455
Score = 167 (63.8 bits), Expect = 2.1e-33, Sum P(2) = 2.1e-33
Identities = 36/65 (55%), Positives = 44/65 (67%)
Query: 203 YKEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSR 259
++EK V EP PE RD RTVF Q+ + RD+ +FFS GKVRDVR+I DRNSR
Sbjct: 158 FREKSPVREPIDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSR 217
Query: 260 RSKGV 264
RSKG+
Sbjct: 218 RSKGI 222
>UNIPROTKB|F6XHX3 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01622 GeneTree:ENSGT00690000102089
Ensembl:ENSCAFT00000017824 EMBL:AAEX03005604 Uniprot:F6XHX3
Length = 425
Score = 251 (93.4 bits), Expect = 8.6e-33, Sum P(2) = 8.6e-33
Identities = 71/199 (35%), Positives = 103/199 (51%)
Query: 322 YIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLY 381
Y+EF ++ SVP+AI L+GQ LLG P++V+ S+AEKN + + A G G + +LY
Sbjct: 196 YVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA--MANNLQKGSSGPM--RLY 251
Query: 382 VGNLHFNMTETQLRKLFEPFGPVEL-VQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALN 440
VG+LHFN+TE LR +FEPFG V VQ + T + +F+ E A+ A LN
Sbjct: 252 VGSLHFNITEDMLRGIFEPFGKVSRNVQYTNESGTIKSNNRAHTKFSDSECARRALEQLN 311
Query: 441 GKLEIVGRTLKVSSVTDHV--GTQDTA--AKSAXXXXXXXXXLALNAQSRALLMQKLDRT 496
G E+ GR ++V VT+ + GT T + L L A+ +L T
Sbjct: 312 G-FELAGRPMRVGHVTERLDGGTDITFPDGEQELDLGSAGGRLQLMAKLAEGSGIQLPTT 370
Query: 497 GIATSIAGSLGVAPAVNGS 515
A + A A +NG+
Sbjct: 371 AAAAAAAAQAAAALQLNGT 389
Score = 167 (63.8 bits), Expect = 8.6e-33, Sum P(2) = 8.6e-33
Identities = 36/65 (55%), Positives = 44/65 (67%)
Query: 203 YKEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSR 259
++EK V EP PE RD RTVF Q+ + RD+ +FFS GKVRDVR+I DRNSR
Sbjct: 130 FREKSPVREPIDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSR 189
Query: 260 RSKGV 264
RSKG+
Sbjct: 190 RSKGI 194
>UNIPROTKB|D4A5G0 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01622 EMBL:AC118414 IPI:IPI00951290
ProteinModelPortal:D4A5G0 Ensembl:ENSRNOT00000068388
ArrayExpress:D4A5G0 Uniprot:D4A5G0
Length = 440
Score = 202 (76.2 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
Identities = 42/81 (51%), Positives = 57/81 (70%)
Query: 322 YIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLY 381
Y+EF DV SVP+AI L+GQ +LG P++V+ S+AEKN ++ A G G + +LY
Sbjct: 189 YVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKN--RAAAMANNLQKGSAGPM--RLY 244
Query: 382 VGNLHFNMTETQLRKLFEPFG 402
VG+LHFN+TE LR +FEPFG
Sbjct: 245 VGSLHFNITEDMLRGIFEPFG 265
Score = 188 (71.2 bits), Expect = 7.8e-25, Sum P(2) = 7.8e-25
Identities = 61/204 (29%), Positives = 84/204 (41%)
Query: 402 GPVELV--QLPLDIETGQCKGF--GFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 457
GP+ L L +I +G F +F+ E AK A LNG E+ GR +KV VT+
Sbjct: 239 GPMRLYVGSLHFNITEDMLRGIFEPFGRFSDSECAKKALEQLNG-FELAGRPMKVGHVTE 297
Query: 458 HVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAV 517
+A+ + L R LM +L G I + A ++GS
Sbjct: 298 RTDAS-SASSFLDSDELERTGIDLGTTGRLQLMARLAE-GTGLQIPPAAQQALQMSGSLA 355
Query: 518 NQQAISLXXXXXXXXXXXXXXXXXXXNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEI 577
AA ++C L NMF+P E + +D EI
Sbjct: 356 FGAVAEFSFVIDLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEI 415
Query: 578 QGDVEEECSKYGRVKHIYVDKRSA 601
+ DV EEC+K+G V HIYVDK SA
Sbjct: 416 KDDVIEECNKHGGVIHIYVDKNSA 439
Score = 166 (63.5 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
Identities = 37/64 (57%), Positives = 43/64 (67%)
Query: 204 KEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR 260
K+K V EP PE RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRR
Sbjct: 124 KDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 183
Query: 261 SKGV 264
SKG+
Sbjct: 184 SKGI 187
>UNIPROTKB|G3V546 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23
ProteinModelPortal:G3V546 SMR:G3V546 Ensembl:ENST00000557403
ArrayExpress:G3V546 Bgee:G3V546 Uniprot:G3V546
Length = 115
Score = 185 (70.2 bits), Expect = 3.7e-24, Sum P(2) = 3.7e-24
Identities = 39/79 (49%), Positives = 55/79 (69%)
Query: 322 YIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLY 381
Y+EF ++ SVP+AI L+GQ LLG P++V+ S+AEKN + + A G G + +LY
Sbjct: 41 YVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA--MANNLQKGNGGPM--RLY 96
Query: 382 VGNLHFNMTETQLRKLFEP 400
VG+LHFN+TE LR +FEP
Sbjct: 97 VGSLHFNITEDMLRGIFEP 115
Score = 120 (47.3 bits), Expect = 3.7e-24, Sum P(2) = 3.7e-24
Identities = 23/38 (60%), Positives = 29/38 (76%)
Query: 227 QMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 264
Q+ + RD+ +FFS GKVRDVR+I DRNSRRSKG+
Sbjct: 2 QLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGI 39
>UNIPROTKB|Q5QP23 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 HOVERGEN:HBG057646
TIGRFAMs:TIGR01622 UniGene:Hs.282901 HGNC:HGNC:15923
HOGENOM:HOG000236253 ChiTaRS:RBM39 IPI:IPI00647282 SMR:Q5QP23
STRING:Q5QP23 Ensembl:ENST00000374038 Uniprot:Q5QP23
Length = 231
Score = 166 (63.5 bits), Expect = 7.4e-20, Sum P(2) = 7.4e-20
Identities = 37/64 (57%), Positives = 43/64 (67%)
Query: 204 KEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR 260
K+K V EP PE RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRR
Sbjct: 132 KDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 191
Query: 261 SKGV 264
SKG+
Sbjct: 192 SKGI 195
Score = 112 (44.5 bits), Expect = 7.4e-20, Sum P(2) = 7.4e-20
Identities = 21/35 (60%), Positives = 29/35 (82%)
Query: 322 YIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEK 356
Y+EF DV SVP+AI L+GQ +LG P++V+ S+AEK
Sbjct: 197 YVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEK 231
>UNIPROTKB|Q5QP21 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL357374
IPI:IPI00514831 UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
SMR:Q5QP21 STRING:Q5QP21 Ensembl:ENST00000427743 Uniprot:Q5QP21
Length = 202
Score = 166 (63.5 bits), Expect = 9.9e-19, Sum P(2) = 9.9e-19
Identities = 37/64 (57%), Positives = 43/64 (67%)
Query: 204 KEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR 260
K+K V EP PE RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRR
Sbjct: 111 KDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 170
Query: 261 SKGV 264
SKG+
Sbjct: 171 SKGI 174
Score = 88 (36.0 bits), Expect = 9.9e-19, Sum P(2) = 9.9e-19
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 322 YIEFYDVMSVPMAIALSGQLLLGQPVM 348
Y+EF DV SVP+AI L+GQ +LG P++
Sbjct: 176 YVEFVDVSSVPLAIGLTGQRVLGVPII 202
>UNIPROTKB|G3V5Z6 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23
ProteinModelPortal:G3V5Z6 SMR:G3V5Z6 Ensembl:ENST00000555209
ArrayExpress:G3V5Z6 Bgee:G3V5Z6 Uniprot:G3V5Z6
Length = 189
Score = 203 (76.5 bits), Expect = 1.0e-15, P = 1.0e-15
Identities = 51/140 (36%), Positives = 74/140 (52%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
+LYVG+LHFN+TE LR +FEPFG ++ + L D +TG+ KG+GF+ F+ E A+ A
Sbjct: 14 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 73
Query: 439 LNGKLEIVGRTLKVSSVTDHVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKL-DRTG 497
LNG E+ GR ++V VT+ + D L +A R LM KL + G
Sbjct: 74 LNG-FELAGRPMRVGHVTERL---DGGTDITFPDGDQELDLG-SAGGRFQLMAKLAEGAG 128
Query: 498 IATSIAGSLGVAPAVNGSAV 517
I + A A +A+
Sbjct: 129 IQLPSTAAAAAAAAAQAAAL 148
>UNIPROTKB|H0YJJ3 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23 Ensembl:ENST00000553884
Uniprot:H0YJJ3
Length = 214
Score = 203 (76.5 bits), Expect = 1.0e-15, P = 1.0e-15
Identities = 51/140 (36%), Positives = 74/140 (52%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
+LYVG+LHFN+TE LR +FEPFG ++ + L D +TG+ KG+GF+ F+ E A+ A
Sbjct: 39 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 98
Query: 439 LNGKLEIVGRTLKVSSVTDHVGTQDTAAKSAXXXXXXXXXLALNAQSRALLMQKL-DRTG 497
LNG E+ GR ++V VT+ + D L +A R LM KL + G
Sbjct: 99 LNG-FELAGRPMRVGHVTERL---DGGTDITFPDGDQELDLG-SAGGRFQLMAKLAEGAG 153
Query: 498 IATSIAGSLGVAPAVNGSAV 517
I + A A +A+
Sbjct: 154 IQLPSTAAAAAAAAAQAAAL 173
>ZFIN|ZDB-GENE-050706-131 [details] [associations]
symbol:u2af2a "U2 small nuclear RNA auxiliary
factor 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0046660 "female sex
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR010519 InterPro:IPR012677
Pfam:PF00076 Pfam:PF06495 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050706-131 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0046660
GeneTree:ENSGT00690000102089 TIGRFAMs:TIGR01642 EMBL:CR848818
IPI:IPI00503978 Ensembl:ENSDART00000124875 Bgee:E7F8Y4
Uniprot:E7F8Y4
Length = 470
Score = 131 (51.2 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 38/155 (24%), Positives = 74/155 (47%)
Query: 319 SYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNL--VQSNTSAGGTATGPYGAI 376
++ ++EF V A+A G + GQ + ++ + L + N S + P G +
Sbjct: 189 NFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGSLPVGVV 248
Query: 377 D-------RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQL 429
KL++G L + + Q+++L FGP++ L D TG KG+ F ++ +
Sbjct: 249 STVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDV 308
Query: 430 EHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQDT 464
+ A + LNG +++ + L V + VG+++T
Sbjct: 309 NISDQAIAGLNG-MQLGDKKLLVQRAS--VGSKNT 340
Score = 122 (48.0 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 33/101 (32%), Positives = 49/101 (48%)
Query: 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYV-------DKRSAGF 603
G P+E L L NM P D + EI DV +ECSKYG+VK I + D G
Sbjct: 367 GIPTEVLCLMNMVAPEELLDDEEYEEIVEDVRDECSKYGQVKSIEIPRPVDGLDIPGTGK 426
Query: 604 VYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEAK 644
+++ F S + A + + R FA R++ + P+ Y +
Sbjct: 427 IFVEFMSVFDSQKAMQGLTGRKFANRVVVTKYCDPDAYHRR 467
Score = 87 (35.7 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 26/86 (30%), Positives = 43/86 (50%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVE-LVQLP----LDIETGQCKGFGFVQFAQLEHA 432
R+LYVGN+ F +TE + F + L Q P L ++ Q K F F++F ++
Sbjct: 142 RRLYVGNIPFGITEESMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDET 201
Query: 433 KAAQSALNGKLEIVGRTLKVSSVTDH 458
A A +G + G++LK+ D+
Sbjct: 202 TQAM-AFDGII-FQGQSLKIRRPHDY 225
Score = 39 (18.8 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFS 242
R R ++ +P TE + +FF+
Sbjct: 139 RQARRLYVGNIPFGITEESMMDFFN 163
>FB|FBgn0034834 [details] [associations]
symbol:LS2 "Large Subunit 2" species:7227 "Drosophila
melanogaster" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0060968 "regulation of gene silencing"
evidence=IMP] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0033119 GO:GO:0060968
HSSP:P26368 eggNOG:NOG298004 TIGRFAMs:TIGR01642 EMBL:AY075220
ProteinModelPortal:Q8T8Y4 SMR:Q8T8Y4 STRING:Q8T8Y4 PaxDb:Q8T8Y4
PRIDE:Q8T8Y4 FlyBase:FBgn0034834 InParanoid:Q8T8Y4
OrthoDB:EOG40K6F6 ArrayExpress:Q8T8Y4 Bgee:Q8T8Y4 Uniprot:Q8T8Y4
Length = 449
Score = 150 (57.9 bits), Expect = 2.2e-13, Sum P(4) = 2.2e-13
Identities = 36/101 (35%), Positives = 59/101 (58%)
Query: 551 GSPSECLLLKNMFDPA-METDPDFDLEIQGDVEEECSKYGRVKHIYVD-------KRSAG 602
GSP+E L L NM P + D +F+ +I+ D+++EC+K+G V+ I + KR G
Sbjct: 346 GSPTETLCLLNMVRPEELLDDEEFE-DIRTDIKQECAKFGEVRSIKIPRPIGQFPKRGCG 404
Query: 603 FVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEA 643
V+++FES E + A +A+ R F+ R++ + PE Y A
Sbjct: 405 KVFVQFESVEDSQKALKALSGRKFSGRIVMTSYYDPEKYLA 445
Score = 91 (37.1 bits), Expect = 2.2e-13, Sum P(4) = 2.2e-13
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
K+YVG L + + Q+++L + FG ++ + L +D T KGF F ++ A +
Sbjct: 243 KIYVGGLPTCLNQDQVKELLQSFGELKGLNLVMDTNTNLNKGFAFFEYCDPSVTDHAIAG 302
Query: 439 LNGKL 443
L+G L
Sbjct: 303 LHGML 307
Score = 67 (28.6 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 24/91 (26%), Positives = 43/91 (47%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEP------FGPVELVQLP----LDIETGQCKGFGFVQFA 427
R+LYVGN+ F +T+ ++ + F F + L +T K F F++F
Sbjct: 111 RRLYVGNIPFGVTDEEMMQFFNHQIMALGFEAKSSHYMDGNAVLTCQTNLEKNFAFLEFR 170
Query: 428 QLEHAKAAQSALNGKLEIVGRTLKVSSVTDH 458
++ A A + +G + G+TLK+ D+
Sbjct: 171 SIDEASQALN-FDGMV-FRGQTLKIRRPHDY 199
Score = 54 (24.1 bits), Expect = 8.7e-09, Sum P(2) = 8.7e-09
Identities = 10/41 (24%), Positives = 21/41 (51%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKG 263
++ +P + V E G+++ + L+MD N+ +KG
Sbjct: 244 IYVGGLPTCLNQDQVKELLQSFGELKGLNLVMDTNTNLNKG 284
Score = 40 (19.1 bits), Expect = 2.2e-13, Sum P(4) = 2.2e-13
Identities = 6/32 (18%), Positives = 16/32 (50%)
Query: 319 SYRYIEFYDVMSVPMAIALSGQLLLGQPVMVK 350
++ ++EF + A+ G + GQ + ++
Sbjct: 163 NFAFLEFRSIDEASQALNFDGMVFRGQTLKIR 194
Score = 39 (18.8 bits), Expect = 2.2e-13, Sum P(4) = 2.2e-13
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFS 242
R R ++ +P T+ ++ +FF+
Sbjct: 108 RQARRLYVGNIPFGVTDEEMMQFFN 132
>WB|WBGene00004389 [details] [associations]
symbol:rnp-6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0007411 "axon guidance"
evidence=IMP] [GO:0007413 "axonal fasciculation" evidence=IMP]
[GO:0018991 "oviposition" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0002009 GO:GO:0006898
GO:GO:0018991 GO:GO:0040010 GO:GO:0007411 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0042127
GO:GO:0040035 GO:GO:0007281 GO:GO:0007413 GO:GO:0040020
GO:GO:0040022 HSSP:Q9V535 EMBL:FO081580
GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
InterPro:IPR006532 TIGRFAMs:TIGR01645 KO:K12838 GeneID:171922
KEGG:cel:CELE_Y47G6A.20 UCSC:Y47G6A.20b CTD:171922 NextBio:873257
RefSeq:NP_491176.1 ProteinModelPortal:Q9N3S4 SMR:Q9N3S4
STRING:Q9N3S4 PRIDE:Q9N3S4 EnsemblMetazoa:Y47G6A.20b
WormBase:Y47G6A.20b InParanoid:Q9N3S4 OMA:RFFGGNT
ArrayExpress:Q9N3S4 Uniprot:Q9N3S4
Length = 749
Score = 161 (61.7 bits), Expect = 3.8e-13, Sum P(2) = 3.8e-13
Identities = 32/81 (39%), Positives = 53/81 (65%)
Query: 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKA 434
+I ++YVG++ F + E LR+ F+PFGP++ + + D TG K F FV++ E A
Sbjct: 99 SIMSRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALL 158
Query: 435 AQSALNGKLEIVGRTLKVSSV 455
AQ ++NG++ + GR LKV+S+
Sbjct: 159 AQESMNGQM-LGGRNLKVNSM 178
Score = 111 (44.1 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 51/210 (24%), Positives = 93/210 (44%)
Query: 312 DPATVL-VSYRYIEFYDVMSVPMAI--ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGT 368
DPAT ++ ++E Y+V + +++GQ+L G+ + V ++ + N
Sbjct: 136 DPATGHHKTFAFVE-YEVPEAALLAQESMNGQMLGGRNLKVNSMMFQEMRLPQNMPQAQP 194
Query: 369 ATGPYGAIDRK---LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQC-KGFGFV 424
+K +YV ++H +++ET L+ +FE FG + QL TG+ +GFG++
Sbjct: 195 IIDMVQKDAKKYFRVYVSSVHPDLSETDLKSVFEAFGEIVKCQLAR-APTGRGHRGFGYL 253
Query: 425 QFAQLEHAKAAQSALNGKLEIVGRTLKVSS-VT--DHVGTQDTAAKSAXXXXXXXXXLAL 481
+F L A + +N ++ G+ L+V VT D + A+ SA A+
Sbjct: 254 EFNNLTSQSEAIAGMN-MFDLGGQYLRVGKCVTPPDALTYLQPASVSAIPASVSVACAAI 312
Query: 482 NAQSRALLMQKLDRTGIATSIAGSLGVAPA 511
A+ A + GS +PA
Sbjct: 313 TAKVMAAEAAAGSSPKTPSESGGSRAASPA 342
Score = 91 (37.1 bits), Expect = 3.8e-13, Sum P(2) = 3.8e-13
Identities = 23/83 (27%), Positives = 42/83 (50%)
Query: 554 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDK-RSAGFV--YLRFES 610
S ++L+NM P D D ++G++ EEC KYG V + + S+G V ++++
Sbjct: 657 SNVIVLRNMVTPQ-----DIDEFLEGEIREECGKYGNVIDVVIANFASSGLVKIFVKYSD 711
Query: 611 TEAAASAQRAMHMRWFARRLISA 633
+ A+ A+ R+F + A
Sbjct: 712 SMQVDRAKAALDGRFFGGNTVKA 734
Score = 37 (18.1 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 602 GFVYLRFESTEAAASAQRAMHM 623
GF YL F + + + A M+M
Sbjct: 249 GFGYLEFNNLTSQSEAIAGMNM 270
>ZFIN|ZDB-GENE-040426-1881 [details] [associations]
symbol:u2af2b "U2 small nuclear RNA auxiliary
factor 2b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0046660 "female sex differentiation" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006529 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1881 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00690000102089
eggNOG:NOG298004 HOGENOM:HOG000180745 KO:K12837 TIGRFAMs:TIGR01642
HOVERGEN:HBG062169 OrthoDB:EOG4PRSQX EMBL:BX950195 EMBL:BC065869
IPI:IPI00502836 RefSeq:NP_991252.1 UniGene:Dr.77328 SMR:Q6P022
STRING:Q6P022 Ensembl:ENSDART00000023571 GeneID:402989
KEGG:dre:402989 CTD:402989 InParanoid:Q6P022 OMA:HERDKEN
NextBio:20816796 Uniprot:Q6P022
Length = 475
Score = 128 (50.1 bits), Expect = 4.6e-13, Sum P(3) = 4.6e-13
Identities = 34/101 (33%), Positives = 50/101 (49%)
Query: 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYV-------DKRSAGF 603
G P+E L L NM P D + EI DV+EECSKYG+VK I + D G
Sbjct: 372 GIPTEVLCLMNMVAPEELIDDEEYEEIVEDVKEECSKYGQVKSIEIPRPVDGLDIPGTGK 431
Query: 604 VYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEAK 644
+++ F S + A + + R FA R++ + P+ Y +
Sbjct: 432 IFVEFTSVYDSQKAMQGLTGRKFANRVVVTKYCDPDAYHRR 472
Score = 120 (47.3 bits), Expect = 4.6e-13, Sum P(3) = 4.6e-13
Identities = 38/155 (24%), Positives = 72/155 (46%)
Query: 319 SYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNL--VQSNTSA---GGTATGPY 373
++ ++EF V A+A G + Q + ++ + L + N S G +T
Sbjct: 199 NFAFLEFRSVDETTQAMAFDGIIFQAQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVP 258
Query: 374 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAK 433
+I KL++G L + + Q+++L FGP++ L D TG KG+ F ++ +
Sbjct: 259 DSI-HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDVNVND 317
Query: 434 AAQSALNGKLEIVGRTLKVSSVTDHVGTQDTAAKS 468
A + LNG +++ + L V + VG ++ S
Sbjct: 318 QAIAGLNG-MQLADKKLLVQRAS--VGAKNATMTS 349
Score = 81 (33.6 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 25/86 (29%), Positives = 42/86 (48%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVE-LVQLP----LDIETGQCKGFGFVQFAQLEHA 432
R+LYVGN+ F +TE + F + L Q P L ++ Q K F F++F ++
Sbjct: 152 RRLYVGNIPFGITEESMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDET 211
Query: 433 KAAQSALNGKLEIVGRTLKVSSVTDH 458
A A +G + ++LK+ D+
Sbjct: 212 TQAM-AFDGII-FQAQSLKIRRPHDY 235
Score = 39 (18.8 bits), Expect = 4.6e-13, Sum P(3) = 4.6e-13
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFS 242
R R ++ +P TE + +FF+
Sbjct: 149 RQARRLYVGNIPFGITEESMMDFFN 173
>UNIPROTKB|K7ENG2 [details] [associations]
symbol:U2AF2 "Splicing factor U2AF 65 kDa subunit"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006529 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 Gene3D:3.30.70.330
EMBL:AC008735 TIGRFAMs:TIGR01642 HGNC:HGNC:23156
Ensembl:ENST00000590551 Uniprot:K7ENG2
Length = 307
Score = 122 (48.0 bits), Expect = 7.7e-13, Sum P(2) = 7.7e-13
Identities = 39/151 (25%), Positives = 72/151 (47%)
Query: 319 SYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNL--VQSNTSA---GGTATG-P 372
++ ++EF V A+A G + GQ + ++ + L + N S G +T P
Sbjct: 32 NFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVP 91
Query: 373 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 432
A KL++G L + + Q+++L FGP++ L D TG KG+ F ++ +
Sbjct: 92 DSA--HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVT 149
Query: 433 KAAQSALNGKLEIVGRTLKVSSVTDHVGTQD 463
A + LNG +++ + L V + VG ++
Sbjct: 150 DQAIAGLNG-MQLGDKKLLVQRAS--VGAKN 177
Score = 118 (46.6 bits), Expect = 7.7e-13, Sum P(2) = 7.7e-13
Identities = 32/101 (31%), Positives = 47/101 (46%)
Query: 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-------SAGF 603
G P+E L L NM P D + EI DV +ECSKYG VK I + + G
Sbjct: 204 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGK 263
Query: 604 VYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEAK 644
+++ F S A + + R FA R++ + P+ Y +
Sbjct: 264 IFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRR 304
Score = 50 (22.7 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 411 LDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDH 458
L ++ Q K F F++F ++ A A +G + G++LK+ D+
Sbjct: 23 LAVQINQDKNFAFLEFRSVDETTQAM-AFDGII-FQGQSLKIRRPHDY 68
>DICTYBASE|DDB_G0285403 [details] [associations]
symbol:DDB_G0285403 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0285403 GO:GO:0000166
EMBL:AAFI02000079 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
KO:K14407 RefSeq:XP_638262.1 ProteinModelPortal:Q54NB8
EnsemblProtists:DDB0233345 GeneID:8625070 KEGG:ddi:DDB_G0285403
InParanoid:Q54NB8 OMA:YIGSINW Uniprot:Q54NB8
Length = 1035
Score = 150 (57.9 bits), Expect = 1.2e-12, Sum P(3) = 1.2e-12
Identities = 31/78 (39%), Positives = 51/78 (65%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
++Y+G++++N+TE Q+R +F FG V L + +TG+ KGFGFV F + A A +
Sbjct: 770 RIYIGSINWNVTEDQVRSIFSQFGRVISCFLMQNADTGKHKGFGFVDFELKKSADDAIAT 829
Query: 439 LNGKLEIVGRTLKVSSVT 456
+NG E++GR++KV T
Sbjct: 830 MNG-FELLGRSIKVGRPT 846
Score = 127 (49.8 bits), Expect = 8.9e-10, Sum P(2) = 8.9e-10
Identities = 29/76 (38%), Positives = 47/76 (61%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA-KAAQS 437
++YVG+LHF++TE +R F FG ++ + L D +G+ KG+ F+++ E A KA QS
Sbjct: 589 RIYVGSLHFSLTEDVIRATFSVFGNIKSLALGKDA-SGKSKGYAFIEYDNQESAAKALQS 647
Query: 438 ALNGKLEIVGRTLKVS 453
N + GR +KV+
Sbjct: 648 MTN--YVMCGRAIKVA 661
Score = 98 (39.6 bits), Expect = 1.2e-12, Sum P(3) = 1.2e-12
Identities = 22/84 (26%), Positives = 41/84 (48%)
Query: 553 PSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGF-VYLRFEST 611
PS CL+LKN P D D + D+ C+++G ++ + + S VY+ F+
Sbjct: 945 PSRCLVLKNAGSP-----DDIDSSFEDDIRSGCNEFGEIEKLVIKSDSQSVKVYILFKDL 999
Query: 612 EAAASAQRAMHMRWFARRLISAIF 635
+ + Q ++ ++F+ I A F
Sbjct: 1000 YSGMACQSKLNGKYFSYHCIKAEF 1023
Score = 46 (21.3 bits), Expect = 1.2e-12, Sum P(3) = 1.2e-12
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKG 263
+DQ ++ + TE + FS G ++ + L D S +SKG
Sbjct: 585 QDQSRIYVGSLHFSLTEDVIRATFSVFGNIKSLALGKDA-SGKSKG 629
>UNIPROTKB|P26368 [details] [associations]
symbol:U2AF2 "Splicing factor U2AF 65 kDa subunit"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0070742
"C2H2 zinc finger domain binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0019899 "enzyme binding"
evidence=IPI] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR006529
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0006406 GO:GO:0000398
EMBL:CH471135 Reactome:REACT_1788 GO:GO:0048025 GO:GO:0006369
GO:GO:0031124 Reactome:REACT_78 PDB:4FXW PDBsum:4FXW
eggNOG:NOG298004 HOGENOM:HOG000180745 KO:K12837 TIGRFAMs:TIGR01642
OMA:TQMGGLP PDB:1JMT PDBsum:1JMT EMBL:X64044 EMBL:BC008740
EMBL:BC030574 IPI:IPI00031556 IPI:IPI00830039 PIR:S20250
RefSeq:NP_001012496.1 RefSeq:NP_009210.1 UniGene:Hs.528007 PDB:1O0P
PDB:1OPI PDB:1U2F PDB:2G4B PDB:2HZC PDB:2U2F PDB:2YH0 PDB:2YH1
PDBsum:1O0P PDBsum:1OPI PDBsum:1U2F PDBsum:2G4B PDBsum:2HZC
PDBsum:2U2F PDBsum:2YH0 PDBsum:2YH1 ProteinModelPortal:P26368
SMR:P26368 DIP:DIP-2154N IntAct:P26368 MINT:MINT-1192370
STRING:P26368 PhosphoSite:P26368 DMDM:267188 PaxDb:P26368
PRIDE:P26368 DNASU:11338 Ensembl:ENST00000308924
Ensembl:ENST00000450554 GeneID:11338 KEGG:hsa:11338 UCSC:uc002qlt.3
UCSC:uc002qlu.3 CTD:11338 GeneCards:GC19P056165 HGNC:HGNC:23156
HPA:CAB010910 MIM:191318 neXtProt:NX_P26368 PharmGKB:PA134908683
HOVERGEN:HBG062169 InParanoid:P26368 OrthoDB:EOG4PRSQX
PhylomeDB:P26368 ChiTaRS:U2AF2 EvolutionaryTrace:P26368
GenomeRNAi:11338 NextBio:43079 PMAP-CutDB:P26368 Bgee:P26368
CleanEx:HS_U2AF2 Genevestigator:P26368 GermOnline:ENSG00000063244
Uniprot:P26368
Length = 475
Score = 123 (48.4 bits), Expect = 4.4e-12, Sum P(3) = 4.4e-12
Identities = 40/156 (25%), Positives = 73/156 (46%)
Query: 319 SYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNL--VQSNTSA---GGTATG-P 372
++ ++EF V A+A G + GQ + ++ + L + N S G +T P
Sbjct: 196 NFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVP 255
Query: 373 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 432
A KL++G L + + Q+++L FGP++ L D TG KG+ F ++ +
Sbjct: 256 DSA--HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVT 313
Query: 433 KAAQSALNGKLEIVGRTLKVSSVTDHVGTQDTAAKS 468
A + LNG +++ + L V + VG ++ S
Sbjct: 314 DQAIAGLNG-MQLGDKKLLVQRAS--VGAKNATLVS 346
Score = 118 (46.6 bits), Expect = 4.4e-12, Sum P(3) = 4.4e-12
Identities = 32/101 (31%), Positives = 47/101 (46%)
Query: 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-------SAGF 603
G P+E L L NM P D + EI DV +ECSKYG VK I + + G
Sbjct: 372 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGK 431
Query: 604 VYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEAK 644
+++ F S A + + R FA R++ + P+ Y +
Sbjct: 432 IFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRR 472
Score = 86 (35.3 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 26/86 (30%), Positives = 43/86 (50%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVE-LVQLP----LDIETGQCKGFGFVQFAQLEHA 432
R+LYVGN+ F +TE + F + L Q P L ++ Q K F F++F ++
Sbjct: 149 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDET 208
Query: 433 KAAQSALNGKLEIVGRTLKVSSVTDH 458
A A +G + G++LK+ D+
Sbjct: 209 TQAM-AFDGII-FQGQSLKIRRPHDY 232
Score = 37 (18.1 bits), Expect = 4.4e-12, Sum P(3) = 4.4e-12
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFS 242
R R ++ +P TE + +FF+
Sbjct: 146 RQARRLYVGNIPFGITEEAMMDFFN 170
>MGI|MGI:98886 [details] [associations]
symbol:U2af2 "U2 small nuclear ribonucleoprotein auxiliary
factor (U2AF) 2" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IDA] [GO:0016607 "nuclear speck" evidence=TAS]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISO]
[GO:0070742 "C2H2 zinc finger domain binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR006529 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:98886
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0048025
GeneTree:ENSGT00690000102089 eggNOG:NOG298004 HOGENOM:HOG000180745
KO:K12837 TIGRFAMs:TIGR01642 OMA:TQMGGLP CTD:11338
HOVERGEN:HBG062169 OrthoDB:EOG4PRSQX EMBL:X64587 EMBL:AK078496
IPI:IPI00113746 PIR:S22646 RefSeq:NP_001192160.1 UniGene:Mm.360389
PDB:3V4M PDBsum:3V4M ProteinModelPortal:P26369 SMR:P26369
STRING:P26369 PhosphoSite:P26369 PaxDb:P26369 PRIDE:P26369
Ensembl:ENSMUST00000005041 GeneID:22185 KEGG:mmu:22185
UCSC:uc009ezu.2 InParanoid:P26369 NextBio:302149 PMAP-CutDB:P26369
Bgee:P26369 Genevestigator:P26369 GermOnline:ENSMUSG00000030435
Uniprot:P26369
Length = 475
Score = 123 (48.4 bits), Expect = 4.4e-12, Sum P(3) = 4.4e-12
Identities = 40/156 (25%), Positives = 73/156 (46%)
Query: 319 SYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNL--VQSNTSA---GGTATG-P 372
++ ++EF V A+A G + GQ + ++ + L + N S G +T P
Sbjct: 196 NFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVP 255
Query: 373 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 432
A KL++G L + + Q+++L FGP++ L D TG KG+ F ++ +
Sbjct: 256 DSA--HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVT 313
Query: 433 KAAQSALNGKLEIVGRTLKVSSVTDHVGTQDTAAKS 468
A + LNG +++ + L V + VG ++ S
Sbjct: 314 DQAIAGLNG-MQLGDKKLLVQRAS--VGAKNATLVS 346
Score = 118 (46.6 bits), Expect = 4.4e-12, Sum P(3) = 4.4e-12
Identities = 32/101 (31%), Positives = 47/101 (46%)
Query: 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-------SAGF 603
G P+E L L NM P D + EI DV +ECSKYG VK I + + G
Sbjct: 372 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGK 431
Query: 604 VYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEAK 644
+++ F S A + + R FA R++ + P+ Y +
Sbjct: 432 IFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRR 472
Score = 86 (35.3 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 26/86 (30%), Positives = 43/86 (50%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVE-LVQLP----LDIETGQCKGFGFVQFAQLEHA 432
R+LYVGN+ F +TE + F + L Q P L ++ Q K F F++F ++
Sbjct: 149 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDET 208
Query: 433 KAAQSALNGKLEIVGRTLKVSSVTDH 458
A A +G + G++LK+ D+
Sbjct: 209 TQAM-AFDGII-FQGQSLKIRRPHDY 232
Score = 37 (18.1 bits), Expect = 4.4e-12, Sum P(3) = 4.4e-12
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFS 242
R R ++ +P TE + +FF+
Sbjct: 146 RQARRLYVGNIPFGITEEAMMDFFN 170
>RGD|1597319 [details] [associations]
symbol:LOC690372 "similar to U2 (RNU2) small nuclear RNA
auxiliary factor 2 isoform b" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0070742 "C2H2 zinc
finger domain binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1597319 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00690000102089
KO:K12837 TIGRFAMs:TIGR01642 CTD:11338 IPI:IPI00366387
RefSeq:XP_003748811.1 UniGene:Rn.15383 ProteinModelPortal:F2Z3T9
SMR:F2Z3T9 PRIDE:F2Z3T9 Ensembl:ENSRNOT00000021391 GeneID:308335
KEGG:rno:308335 NextBio:740780 Uniprot:F2Z3T9
Length = 475
Score = 123 (48.4 bits), Expect = 4.4e-12, Sum P(3) = 4.4e-12
Identities = 40/156 (25%), Positives = 73/156 (46%)
Query: 319 SYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNL--VQSNTSA---GGTATG-P 372
++ ++EF V A+A G + GQ + ++ + L + N S G +T P
Sbjct: 196 NFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVP 255
Query: 373 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 432
A KL++G L + + Q+++L FGP++ L D TG KG+ F ++ +
Sbjct: 256 DSA--HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVT 313
Query: 433 KAAQSALNGKLEIVGRTLKVSSVTDHVGTQDTAAKS 468
A + LNG +++ + L V + VG ++ S
Sbjct: 314 DQAIAGLNG-MQLGDKKLLVQRAS--VGAKNATLVS 346
Score = 118 (46.6 bits), Expect = 4.4e-12, Sum P(3) = 4.4e-12
Identities = 32/101 (31%), Positives = 47/101 (46%)
Query: 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-------SAGF 603
G P+E L L NM P D + EI DV +ECSKYG VK I + + G
Sbjct: 372 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGK 431
Query: 604 VYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEAK 644
+++ F S A + + R FA R++ + P+ Y +
Sbjct: 432 IFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRR 472
Score = 86 (35.3 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 26/86 (30%), Positives = 43/86 (50%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVE-LVQLP----LDIETGQCKGFGFVQFAQLEHA 432
R+LYVGN+ F +TE + F + L Q P L ++ Q K F F++F ++
Sbjct: 149 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDET 208
Query: 433 KAAQSALNGKLEIVGRTLKVSSVTDH 458
A A +G + G++LK+ D+
Sbjct: 209 TQAM-AFDGII-FQGQSLKIRRPHDY 232
Score = 37 (18.1 bits), Expect = 4.4e-12, Sum P(3) = 4.4e-12
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFS 242
R R ++ +P TE + +FF+
Sbjct: 146 RQARRLYVGNIPFGITEEAMMDFFN 170
>UNIPROTKB|E2R0G3 [details] [associations]
symbol:U2AF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006529 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00690000102089 KO:K12837 TIGRFAMs:TIGR01642
OMA:TQMGGLP CTD:11338 EMBL:AAEX03000723 RefSeq:XP_003638845.1
ProteinModelPortal:E2R0G3 Ensembl:ENSCAFT00000004031
GeneID:100687048 KEGG:cfa:100687048 Uniprot:E2R0G3
Length = 471
Score = 122 (48.0 bits), Expect = 5.4e-12, Sum P(3) = 5.4e-12
Identities = 39/151 (25%), Positives = 72/151 (47%)
Query: 319 SYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNL--VQSNTSA---GGTATG-P 372
++ ++EF V A+A G + GQ + ++ + L + N S G +T P
Sbjct: 196 NFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVP 255
Query: 373 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 432
A KL++G L + + Q+++L FGP++ L D TG KG+ F ++ +
Sbjct: 256 DSA--HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVT 313
Query: 433 KAAQSALNGKLEIVGRTLKVSSVTDHVGTQD 463
A + LNG +++ + L V + VG ++
Sbjct: 314 DQAIAGLNG-MQLGDKKLLVQRAS--VGAKN 341
Score = 118 (46.6 bits), Expect = 5.4e-12, Sum P(3) = 5.4e-12
Identities = 32/101 (31%), Positives = 47/101 (46%)
Query: 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-------SAGF 603
G P+E L L NM P D + EI DV +ECSKYG VK I + + G
Sbjct: 368 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGK 427
Query: 604 VYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEAK 644
+++ F S A + + R FA R++ + P+ Y +
Sbjct: 428 IFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRR 468
Score = 86 (35.3 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 26/86 (30%), Positives = 43/86 (50%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVE-LVQLP----LDIETGQCKGFGFVQFAQLEHA 432
R+LYVGN+ F +TE + F + L Q P L ++ Q K F F++F ++
Sbjct: 149 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDET 208
Query: 433 KAAQSALNGKLEIVGRTLKVSSVTDH 458
A A +G + G++LK+ D+
Sbjct: 209 TQAM-AFDGII-FQGQSLKIRRPHDY 232
Score = 37 (18.1 bits), Expect = 5.4e-12, Sum P(3) = 5.4e-12
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFS 242
R R ++ +P TE + +FF+
Sbjct: 146 RQARRLYVGNIPFGITEEAMMDFFN 170
>UNIPROTKB|F1P1V2 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0019907 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AADN02016569 EMBL:AADN02016570
EMBL:AADN02016571 EMBL:AADN02016572 EMBL:AADN02016573
EMBL:AADN02016574 IPI:IPI00820905 Ensembl:ENSGALT00000022812
ArrayExpress:F1P1V2 Uniprot:F1P1V2
Length = 522
Score = 131 (51.2 bits), Expect = 8.2e-12, Sum P(2) = 8.2e-12
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKA 434
AI ++YVG++++ + E +R+ F PFGP++ + + D T + KGF FV++ E A+
Sbjct: 89 AIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQL 148
Query: 435 AQSALNGKLEIVGRTLKV 452
A +N + + GR +KV
Sbjct: 149 ALEQMNSVM-LGGRNIKV 165
Score = 120 (47.3 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 23/79 (29%), Positives = 52/79 (65%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
++YV ++H ++++ ++ +FE FG ++ L D TG+ KG+GF+++ + + ++ A S+
Sbjct: 190 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 249
Query: 439 LNGKLEIVGRTLKVS-SVT 456
+N ++ G+ L+V +VT
Sbjct: 250 MN-LFDLGGQYLRVGKAVT 267
Score = 106 (42.4 bits), Expect = 8.2e-12, Sum P(2) = 8.2e-12
Identities = 25/92 (27%), Positives = 48/92 (52%)
Query: 554 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGF---------V 604
S ++L+NM DP D D +++G+V EEC K+G V + + + G +
Sbjct: 424 STVMVLRNMVDPK-----DIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKI 478
Query: 605 YLRFESTEAAASAQRAMHMRWFA-RRLISAIF 635
++ F A +A++ RWFA R++++ ++
Sbjct: 479 FVEFSMASETHKAIQALNGRWFAGRKVVAEVY 510
>TAIR|locus:2206001 [details] [associations]
symbol:AT1G60900 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC018908 HSSP:P26368 eggNOG:NOG298004
HOGENOM:HOG000180745 KO:K12837 TIGRFAMs:TIGR01642 EMBL:AY140014
IPI:IPI00528167 PIR:E96634 RefSeq:NP_176287.3 UniGene:At.17780
UniGene:At.52293 ProteinModelPortal:Q8L716 SMR:Q8L716 PaxDb:Q8L716
PRIDE:Q8L716 EnsemblPlants:AT1G60900.1 GeneID:842382
KEGG:ath:AT1G60900 GeneFarm:4545 TAIR:At1g60900 InParanoid:Q8L716
OMA:TQMGGLP PhylomeDB:Q8L716 ProtClustDB:CLSN2918395
Genevestigator:Q8L716 Uniprot:Q8L716
Length = 589
Score = 160 (61.4 bits), Expect = 1.0e-11, Sum P(3) = 1.0e-11
Identities = 46/146 (31%), Positives = 74/146 (50%)
Query: 320 YRYIEFYDVMSVPMAIALSGQLLLGQPVMVK-PSEAEKNLVQS----------NTSAGGT 368
+ ++E V A+AL G +L G PV V+ P++ +L + N A G
Sbjct: 304 FAFVEMRSVEEASNAMALDGIILEGVPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGL 363
Query: 369 ATGPYGAIDR--KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQF 426
++G G ++ +++VG L + TE Q+R+L E FGP+ L D ETG KG+ F +
Sbjct: 364 SSGSTGGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVY 423
Query: 427 AQLEHAKAAQSALNGKLEIVGRTLKV 452
A +ALNG +++ +TL V
Sbjct: 424 QDPSVTDIACAALNG-IKMGDKTLTV 448
Score = 72 (30.4 bits), Expect = 1.0e-11, Sum P(3) = 1.0e-11
Identities = 22/102 (21%), Positives = 48/102 (47%)
Query: 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRS--------AG 602
G+P++ + L + D + EI D+ +E K+G + ++ + + + G
Sbjct: 484 GTPTKIVCLTQVVTADDLRDDEEYAEIMEDMRQEGGKFGNLVNVVIPRPNPDHDPTPGVG 543
Query: 603 FVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEAK 644
V+L + + ++ A+ M+ R F + A++ PED A+
Sbjct: 544 KVFLEYADVDGSSKARSGMNGRKFGGNQVVAVYY-PEDKYAQ 584
Score = 42 (19.8 bits), Expect = 1.0e-11, Sum P(3) = 1.0e-11
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFSK 243
R R V+ +P A E+ V FFS+
Sbjct: 252 RHARRVYVGGLPPTANEQSVSTFFSQ 277
>UNIPROTKB|F1N238 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0019907 "cyclin-dependent protein
kinase activating kinase holoenzyme complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 IPI:IPI00697616
UniGene:Bt.56130 OMA:CLQQVNG EMBL:DAAA02037460
Ensembl:ENSBTAT00000002882 Uniprot:F1N238
Length = 530
Score = 131 (51.2 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKA 434
AI ++YVG++++ + E +R+ F PFGP++ + + D T + KGF FV++ E A+
Sbjct: 97 AIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQL 156
Query: 435 AQSALNGKLEIVGRTLKV 452
A +N + + GR +KV
Sbjct: 157 ALEQMNSVM-LGGRNIKV 173
Score = 120 (47.3 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 23/79 (29%), Positives = 52/79 (65%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
++YV ++H ++++ ++ +FE FG ++ L D TG+ KG+GF+++ + + ++ A S+
Sbjct: 198 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 257
Query: 439 LNGKLEIVGRTLKVS-SVT 456
+N ++ G+ L+V +VT
Sbjct: 258 MN-LFDLGGQYLRVGKAVT 275
Score = 105 (42.0 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 25/92 (27%), Positives = 48/92 (52%)
Query: 554 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGF---------V 604
S ++L+NM DP D D +++G+V EEC K+G V + + + G +
Sbjct: 432 STVMVLRNMVDPK-----DIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKI 486
Query: 605 YLRFESTEAAASAQRAMHMRWFA-RRLISAIF 635
++ F A +A++ RWFA R++++ ++
Sbjct: 487 FVEFSVASETHKAIQALNGRWFAGRKVVAEVY 518
>UNIPROTKB|Q24JZ8 [details] [associations]
symbol:U2AF2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070742 "C2H2 zinc finger domain binding" evidence=IEA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA] [GO:0019899 "enzyme binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006529
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0048025
GeneTree:ENSGT00690000102089 eggNOG:NOG298004 HOGENOM:HOG000180745
KO:K12837 TIGRFAMs:TIGR01642 OMA:TQMGGLP CTD:11338
HOVERGEN:HBG062169 OrthoDB:EOG4PRSQX EMBL:DAAA02047732
EMBL:BC114160 IPI:IPI00705989 RefSeq:NP_001068804.1
UniGene:Bt.41502 SMR:Q24JZ8 STRING:Q24JZ8
Ensembl:ENSBTAT00000003664 GeneID:507895 KEGG:bta:507895
InParanoid:Q24JZ8 NextBio:20868263 Uniprot:Q24JZ8
Length = 475
Score = 123 (48.4 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 40/156 (25%), Positives = 73/156 (46%)
Query: 319 SYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNL--VQSNTSA---GGTATG-P 372
++ ++EF V A+A G + GQ + ++ + L + N S G +T P
Sbjct: 196 NFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVP 255
Query: 373 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 432
A KL++G L + + Q+++L FGP++ L D TG KG+ F ++ +
Sbjct: 256 DSA--HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVT 313
Query: 433 KAAQSALNGKLEIVGRTLKVSSVTDHVGTQDTAAKS 468
A + LNG +++ + L V + VG ++ S
Sbjct: 314 DQAIAGLNG-MQLGDKKLLVQRAS--VGAKNATLVS 346
Score = 114 (45.2 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 31/101 (30%), Positives = 46/101 (45%)
Query: 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-------SAGF 603
G P+E L L NM P D + EI DV +EC KYG VK I + + G
Sbjct: 372 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECGKYGLVKSIEIPRPVDGVEVPGCGK 431
Query: 604 VYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEAK 644
+++ F S A + + R FA R++ + P+ Y +
Sbjct: 432 IFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRR 472
Score = 86 (35.3 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 26/86 (30%), Positives = 43/86 (50%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVE-LVQLP----LDIETGQCKGFGFVQFAQLEHA 432
R+LYVGN+ F +TE + F + L Q P L ++ Q K F F++F ++
Sbjct: 149 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDET 208
Query: 433 KAAQSALNGKLEIVGRTLKVSSVTDH 458
A A +G + G++LK+ D+
Sbjct: 209 TQAM-AFDGII-FQGQSLKIRRPHDY 232
Score = 37 (18.1 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFS 242
R R ++ +P TE + +FF+
Sbjct: 146 RQARRLYVGNIPFGITEEAMMDFFN 170
>UNIPROTKB|E2RA48 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 CTD:22827 KO:K12838 EMBL:AAEX03008941
RefSeq:XP_857040.1 Ensembl:ENSCAFT00000002168 GeneID:607245
KEGG:cfa:607245 NextBio:20892984 Uniprot:E2RA48
Length = 543
Score = 131 (51.2 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKA 434
AI ++YVG++++ + E +R+ F PFGP++ + + D T + KGF FV++ E A+
Sbjct: 110 AIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQL 169
Query: 435 AQSALNGKLEIVGRTLKV 452
A +N + + GR +KV
Sbjct: 170 ALEQMNSVM-LGGRNIKV 186
Score = 120 (47.3 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 23/79 (29%), Positives = 52/79 (65%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
++YV ++H ++++ ++ +FE FG ++ L D TG+ KG+GF+++ + + ++ A S+
Sbjct: 211 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 270
Query: 439 LNGKLEIVGRTLKVS-SVT 456
+N ++ G+ L+V +VT
Sbjct: 271 MN-LFDLGGQYLRVGKAVT 288
Score = 105 (42.0 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 25/92 (27%), Positives = 48/92 (52%)
Query: 554 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGF---------V 604
S ++L+NM DP D D +++G+V EEC K+G V + + + G +
Sbjct: 445 STVMVLRNMVDPK-----DIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKI 499
Query: 605 YLRFESTEAAASAQRAMHMRWFA-RRLISAIF 635
++ F A +A++ RWFA R++++ ++
Sbjct: 500 FVEFSIASETHKAIQALNGRWFAGRKVVAEVY 531
>UNIPROTKB|Q9UHX1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
EMBL:CH471162 eggNOG:COG0724 PDB:2KXH PDBsum:2KXH
HOVERGEN:HBG055622 InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827
KO:K12838 EMBL:AF217197 EMBL:AF114818 EMBL:AK292373 EMBL:CR457143
EMBL:BC008875 EMBL:BC009734 EMBL:BC011265 EMBL:BC011979 EMBL:U51586
EMBL:AF190744 IPI:IPI00069750 IPI:IPI00100716 IPI:IPI00788826
IPI:IPI00797595 IPI:IPI00855912 IPI:IPI00856076
RefSeq:NP_001129505.1 RefSeq:NP_001258025.1 RefSeq:NP_001258026.1
RefSeq:NP_001258027.1 RefSeq:NP_001258028.1 RefSeq:NP_001258029.1
RefSeq:NP_055096.2 RefSeq:NP_510965.1 UniGene:Hs.521924 PDB:2DNY
PDB:2KXF PDB:2QFJ PDB:3DXB PDB:3UE2 PDB:3US5 PDB:3UWT PDBsum:2DNY
PDBsum:2KXF PDBsum:2QFJ PDBsum:3DXB PDBsum:3UE2 PDBsum:3US5
PDBsum:3UWT ProteinModelPortal:Q9UHX1 SMR:Q9UHX1 DIP:DIP-34636N
IntAct:Q9UHX1 MINT:MINT-1374433 STRING:Q9UHX1 PhosphoSite:Q9UHX1
DMDM:74761960 PaxDb:Q9UHX1 PRIDE:Q9UHX1 Ensembl:ENST00000313352
Ensembl:ENST00000349157 Ensembl:ENST00000453551
Ensembl:ENST00000456095 Ensembl:ENST00000526683
Ensembl:ENST00000527197 Ensembl:ENST00000563311
Ensembl:ENST00000563654 Ensembl:ENST00000566765
Ensembl:ENST00000567937 Ensembl:ENST00000568960
Ensembl:ENST00000569567 GeneID:22827 KEGG:hsa:22827 UCSC:uc003yzq.3
UCSC:uc003yzr.3 UCSC:uc003yzt.3 GeneCards:GC08M144898
HGNC:HGNC:17042 HPA:HPA045733 MIM:604819 neXtProt:NX_Q9UHX1
PharmGKB:PA162400364 InParanoid:Q9UHX1 OMA:CLQQVNG
EvolutionaryTrace:Q9UHX1 GenomeRNAi:22827 NextBio:43236
ArrayExpress:Q9UHX1 Bgee:Q9UHX1 CleanEx:HS_PUF60
Genevestigator:Q9UHX1 Uniprot:Q9UHX1
Length = 559
Score = 131 (51.2 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKA 434
AI ++YVG++++ + E +R+ F PFGP++ + + D T + KGF FV++ E A+
Sbjct: 126 AIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQL 185
Query: 435 AQSALNGKLEIVGRTLKV 452
A +N + + GR +KV
Sbjct: 186 ALEQMNSVM-LGGRNIKV 202
Score = 120 (47.3 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 23/79 (29%), Positives = 52/79 (65%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
++YV ++H ++++ ++ +FE FG ++ L D TG+ KG+GF+++ + + ++ A S+
Sbjct: 227 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 286
Query: 439 LNGKLEIVGRTLKVS-SVT 456
+N ++ G+ L+V +VT
Sbjct: 287 MN-LFDLGGQYLRVGKAVT 304
Score = 105 (42.0 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 25/92 (27%), Positives = 48/92 (52%)
Query: 554 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGF---------V 604
S ++L+NM DP D D +++G+V EEC K+G V + + + G +
Sbjct: 461 STVMVLRNMVDPK-----DIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKI 515
Query: 605 YLRFESTEAAASAQRAMHMRWFA-RRLISAIF 635
++ F A +A++ RWFA R++++ ++
Sbjct: 516 FVEFSIASETHKAIQALNGRWFAGRKVVAEVY 547
>ZFIN|ZDB-GENE-040625-116 [details] [associations]
symbol:puf60b "poly-U binding splicing factor b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040625-116 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 EMBL:AL772146 EMBL:BC071467 IPI:IPI00495062
IPI:IPI00512039 IPI:IPI00866101 RefSeq:NP_001002121.1
UniGene:Dr.90714 HSSP:P26368 ProteinModelPortal:Q6IQE0 SMR:Q6IQE0
STRING:Q6IQE0 PRIDE:Q6IQE0 Ensembl:ENSDART00000038487
Ensembl:ENSDART00000052274 Ensembl:ENSDART00000143285 GeneID:415211
KEGG:dre:415211 CTD:415211 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 InParanoid:Q7ZZ33
OMA:YLTELEI OrthoDB:EOG4SQWWP NextBio:20818880 Bgee:Q6IQE0
InterPro:IPR006532 TIGRFAMs:TIGR01645 Uniprot:Q6IQE0
Length = 516
Score = 131 (51.2 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKA 434
AI ++YVG++++ + E +R+ F PFGP++ + + D T + KGF FV++ E A+
Sbjct: 83 AIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQL 142
Query: 435 AQSALNGKLEIVGRTLKV 452
A +N + + GR +KV
Sbjct: 143 ALEQMNSVM-LGGRNIKV 159
Score = 115 (45.5 bits), Expect = 7.6e-10, Sum P(2) = 7.6e-10
Identities = 23/79 (29%), Positives = 51/79 (64%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
++YV ++H ++++ ++ +FE FG ++ L + TG+ KGFGF+++ + + + A S+
Sbjct: 184 RIYVASIHPDLSDDDIKSVFEAFGKIKSCMLAREPTTGKHKGFGFIEYEKPQSSLDAVSS 243
Query: 439 LNGKLEIVGRTLKVS-SVT 456
+N ++ G+ L+V +VT
Sbjct: 244 MN-LFDLGGQYLRVGKAVT 261
Score = 104 (41.7 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 27/96 (28%), Positives = 49/96 (51%)
Query: 550 IGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGF------ 603
I S S ++L+NM P D D +++G+V EEC KYG V + + + G
Sbjct: 414 IQSKSTVMVLRNMVGPE-----DIDDDLEGEVMEECGKYGAVNRVIIYQERQGEEDDAEI 468
Query: 604 ---VYLRFESTEAAASAQRAMHMRWFA-RRLISAIF 635
+++ F A +A++ RWFA R++++ ++
Sbjct: 469 IVKIFVEFSDAGEMNKAIQALNNRWFAGRKVVAELY 504
Score = 39 (18.8 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 8/49 (16%), Positives = 25/49 (51%)
Query: 580 DVEEECSKYGRVKHIYVDK-----RSAGFVYLRFESTEAAASAQRAMHM 623
D++ +G++K + + + GF ++ +E +++ A +M++
Sbjct: 198 DIKSVFEAFGKIKSCMLAREPTTGKHKGFGFIEYEKPQSSLDAVSSMNL 246
>UNIPROTKB|J9P4I7 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AAEX03008941
Ensembl:ENSCAFT00000045695 Uniprot:J9P4I7
Length = 560
Score = 131 (51.2 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKA 434
AI ++YVG++++ + E +R+ F PFGP++ + + D T + KGF FV++ E A+
Sbjct: 127 AIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQL 186
Query: 435 AQSALNGKLEIVGRTLKV 452
A +N + + GR +KV
Sbjct: 187 ALEQMNSVM-LGGRNIKV 203
Score = 120 (47.3 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 23/79 (29%), Positives = 52/79 (65%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
++YV ++H ++++ ++ +FE FG ++ L D TG+ KG+GF+++ + + ++ A S+
Sbjct: 228 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 287
Query: 439 LNGKLEIVGRTLKVS-SVT 456
+N ++ G+ L+V +VT
Sbjct: 288 MN-LFDLGGQYLRVGKAVT 305
Score = 105 (42.0 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 25/92 (27%), Positives = 48/92 (52%)
Query: 554 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGF---------V 604
S ++L+NM DP D D +++G+V EEC K+G V + + + G +
Sbjct: 462 STVMVLRNMVDPK-----DIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKI 516
Query: 605 YLRFESTEAAASAQRAMHMRWFA-RRLISAIF 635
++ F A +A++ RWFA R++++ ++
Sbjct: 517 FVEFSIASETHKAIQALNGRWFAGRKVVAEVY 548
>FB|FBgn0005411 [details] [associations]
symbol:U2af50 "U2 small nuclear riboprotein auxiliary factor
50" species:7227 "Drosophila melanogaster" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS;NAS;IMP] [GO:0005686 "U2
snRNP" evidence=TAS] [GO:0008187 "poly-pyrimidine tract binding"
evidence=NAS;IDA] [GO:0005681 "spliceosomal complex"
evidence=ISS;NAS] [GO:0000245 "spliceosomal complex assembly"
evidence=NAS] [GO:0046982 "protein heterodimerization activity"
evidence=NAS] [GO:0005634 "nucleus" evidence=IC;NAS] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0051168 "nuclear export" evidence=IMP]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007052 "mitotic spindle
organization" evidence=IMP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR006529 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007052
GO:GO:0022008 GO:GO:0000166 EMBL:AE014298 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0051168
GO:GO:0005686 GO:GO:0000381 GO:GO:0008187
GeneTree:ENSGT00690000102089 eggNOG:NOG298004 KO:K12837
TIGRFAMs:TIGR01642 EMBL:L23404 EMBL:AY069320 PIR:A48249
RefSeq:NP_001245710.1 RefSeq:NP_476891.1 UniGene:Dm.5430
ProteinModelPortal:Q24562 SMR:Q24562 DIP:DIP-23323N IntAct:Q24562
MINT:MINT-790159 STRING:Q24562 PaxDb:Q24562 PRIDE:Q24562
EnsemblMetazoa:FBtr0074234 EnsemblMetazoa:FBtr0307178 GeneID:32602
KEGG:dme:Dmel_CG9998 CTD:32602 FlyBase:FBgn0005411
InParanoid:Q24562 OrthoDB:EOG40CFZH PhylomeDB:Q24562
GenomeRNAi:32602 NextBio:779380 Bgee:Q24562 GermOnline:CG9998
Uniprot:Q24562
Length = 416
Score = 118 (46.6 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 30/101 (29%), Positives = 50/101 (49%)
Query: 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-------SAGF 603
G P+E L L NM P D + +I D++EEC+KYG V+ + + + G
Sbjct: 314 GPPTEVLCLLNMVTPDELRDEEEYEDILEDIKEECTKYGVVRSVEIPRPIEGVEVPGCGK 373
Query: 604 VYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEAK 644
V++ F S AQ+A+ R F+ R++ + P+ Y +
Sbjct: 374 VFVEFNSVLDCQKAQQALTGRKFSDRVVVTSYFDPDKYHRR 414
Score = 107 (42.7 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 32/131 (24%), Positives = 59/131 (45%)
Query: 319 SYRYIEFYDVMSVPMAIALSGQLLLGQPVMVK-PSEAEKNLVQSNTSAGGTATGPYGAID 377
++ ++EF + A+A G L GQ + ++ P + + ++T A A G I
Sbjct: 140 NFAFLEFRSIDETTQAMAFDGINLKGQSLKIRRPHDYQPMPGITDTPAIKPAVVSSGVIS 199
Query: 378 -------RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLE 430
K+++G L + + Q+++L FG + L D TG KG+ F ++ L
Sbjct: 200 TVVPDSPHKIFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEYVDLS 259
Query: 431 HAKAAQSALNG 441
+ + LNG
Sbjct: 260 ITDQSIAGLNG 270
Score = 90 (36.7 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 30/97 (30%), Positives = 49/97 (50%)
Query: 378 RKLYVGNLHFNMTETQLRKLF-EPFGPVELVQL---P-LDIETGQCKGFGFVQFAQLEHA 432
R+LYVGN+ F +TE ++ + F + V L Q P L + K F F++F ++
Sbjct: 93 RRLYVGNIPFGVTEEEMMEFFNQQMHLVGLAQAAGSPVLACQINLDKNFAFLEFRSIDET 152
Query: 433 KAAQSALNGKLEIVGRTLKVSSVTDHV---GTQDTAA 466
A A +G + + G++LK+ D+ G DT A
Sbjct: 153 TQAM-AFDG-INLKGQSLKIRRPHDYQPMPGITDTPA 187
Score = 46 (21.3 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFSK 243
R R ++ +P TE ++ EFF++
Sbjct: 90 RQARRLYVGNIPFGVTEEEMMEFFNQ 115
Score = 44 (20.5 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKG 263
+F +P + V E GK+R L+ D + SKG
Sbjct: 209 IFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKG 249
>MGI|MGI:1915209 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1915209 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 GO:GO:0019907 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP
InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827 KO:K12838
OMA:CLQQVNG EMBL:AK149632 EMBL:AK151526 EMBL:AK168789 EMBL:BC010601
IPI:IPI00127174 IPI:IPI00652919 IPI:IPI00857642
RefSeq:NP_001158072.1 RefSeq:NP_082640.2 RefSeq:NP_598452.2
UniGene:Mm.29965 HSSP:Q9UNP9 ProteinModelPortal:Q3UEB3 SMR:Q3UEB3
STRING:Q3UEB3 PhosphoSite:Q3UEB3 PaxDb:Q3UEB3 PRIDE:Q3UEB3
Ensembl:ENSMUST00000002599 Ensembl:ENSMUST00000100527 GeneID:67959
KEGG:mmu:67959 UCSC:uc007wij.2 UCSC:uc007wik.2 UCSC:uc011zup.1
InParanoid:Q3UEB3 NextBio:326074 Bgee:Q3UEB3 CleanEx:MM_PUF60
Genevestigator:Q3UEB3 Uniprot:Q3UEB3
Length = 564
Score = 131 (51.2 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKA 434
AI ++YVG++++ + E +R+ F PFGP++ + + D T + KGF FV++ E A+
Sbjct: 131 AIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQL 190
Query: 435 AQSALNGKLEIVGRTLKV 452
A +N + + GR +KV
Sbjct: 191 ALEQMNSVM-LGGRNIKV 207
Score = 120 (47.3 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 23/79 (29%), Positives = 52/79 (65%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
++YV ++H ++++ ++ +FE FG ++ L D TG+ KG+GF+++ + + ++ A S+
Sbjct: 232 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 291
Query: 439 LNGKLEIVGRTLKVS-SVT 456
+N ++ G+ L+V +VT
Sbjct: 292 MN-LFDLGGQYLRVGKAVT 309
Score = 102 (41.0 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 24/92 (26%), Positives = 47/92 (51%)
Query: 554 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGF---------V 604
S ++L+NM DP D D +++G+V EEC K+G V + + + G +
Sbjct: 466 STVMVLRNMVDPK-----DIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKI 520
Query: 605 YLRFESTEAAASAQRAMHMRWFA-RRLISAIF 635
++ F A +A++ RWF R++++ ++
Sbjct: 521 FVEFSMASETHKAIQALNGRWFGGRKVVAEVY 552
>RGD|621674 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0019907 "cyclin-dependent protein kinase activating kinase
holoenzyme complex" evidence=IEA;ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:621674 GO:GO:0006915
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0030529 eggNOG:COG0724 GO:GO:0019907
GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG HSSP:Q9UNP9 EMBL:AF165892
EMBL:AABR03055594 IPI:IPI00204315 IPI:IPI00780677 UniGene:Rn.96174
ProteinModelPortal:Q9WV25 SMR:Q9WV25 STRING:Q9WV25 PRIDE:Q9WV25
Ensembl:ENSRNOT00000013353 Ensembl:ENSRNOT00000056481
UCSC:RGD:621674 InParanoid:Q9WV25 NextBio:616833
Genevestigator:Q9WV25 Uniprot:Q9WV25
Length = 564
Score = 131 (51.2 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKA 434
AI ++YVG++++ + E +R+ F PFGP++ + + D T + KGF FV++ E A+
Sbjct: 131 AIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQL 190
Query: 435 AQSALNGKLEIVGRTLKV 452
A +N + + GR +KV
Sbjct: 191 ALEQMNSVM-LGGRNIKV 207
Score = 120 (47.3 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 23/79 (29%), Positives = 52/79 (65%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
++YV ++H ++++ ++ +FE FG ++ L D TG+ KG+GF+++ + + ++ A S+
Sbjct: 232 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 291
Query: 439 LNGKLEIVGRTLKVS-SVT 456
+N ++ G+ L+V +VT
Sbjct: 292 MN-LFDLGGQYLRVGKAVT 309
Score = 102 (41.0 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 24/92 (26%), Positives = 47/92 (51%)
Query: 554 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGF---------V 604
S ++L+NM DP D D +++G+V EEC K+G V + + + G +
Sbjct: 466 STVMVLRNMVDPK-----DIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKI 520
Query: 605 YLRFESTEAAASAQRAMHMRWFA-RRLISAIF 635
++ F A +A++ RWF R++++ ++
Sbjct: 521 FVEFSMASETHKAIQALNGRWFGGRKVVAEVY 552
>UNIPROTKB|Q2HJG2 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000267001 HOVERGEN:HBG055622
OrthoDB:EOG4SQWWP InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:BC105447 IPI:IPI00697616 RefSeq:NP_001039598.1
UniGene:Bt.56130 ProteinModelPortal:Q2HJG2 SMR:Q2HJG2 STRING:Q2HJG2
PRIDE:Q2HJG2 GeneID:512824 KEGG:bta:512824 CTD:22827
InParanoid:Q2HJG2 KO:K12838 NextBio:20870569 Uniprot:Q2HJG2
Length = 530
Score = 131 (51.2 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKA 434
AI ++YVG++++ + E +R+ F PFGP++ + + D T + KGF FV++ E A+
Sbjct: 97 AIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQL 156
Query: 435 AQSALNGKLEIVGRTLKV 452
A +N + + GR +KV
Sbjct: 157 ALEQMNSVM-LGGRNIKV 173
Score = 120 (47.3 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 23/79 (29%), Positives = 52/79 (65%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
++YV ++H ++++ ++ +FE FG ++ L D TG+ KG+GF+++ + + ++ A S+
Sbjct: 198 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 257
Query: 439 LNGKLEIVGRTLKVS-SVT 456
+N ++ G+ L+V +VT
Sbjct: 258 MN-LFDLGGQYLRVGKAVT 275
Score = 101 (40.6 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 28/92 (30%), Positives = 49/92 (53%)
Query: 554 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKH--IYVDKRS----AGFVYLR 607
S ++L+NM DP D D +++G+V EEC K+G V IY +K+ A +
Sbjct: 432 STVMVLRNMVDPK-----DIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKI 486
Query: 608 FESTEAAASAQRA---MHMRWFA-RRLISAIF 635
F A+ +A ++ RWFA R++++ ++
Sbjct: 487 FVEFSVASETHKAIQDLNGRWFAGRKVVAEVY 518
>ZFIN|ZDB-GENE-030131-2891 [details] [associations]
symbol:puf60a "poly-U binding splicing factor a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003954 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00361
ZFIN:ZDB-GENE-030131-2891 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 EMBL:BX323559 IPI:IPI00919560
Ensembl:ENSDART00000056645 ArrayExpress:F1QZ57 Bgee:F1QZ57
Uniprot:F1QZ57
Length = 538
Score = 130 (50.8 bits), Expect = 7.7e-11, Sum P(2) = 7.7e-11
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKA 434
AI ++YVG++++ + E +R+ F PFGP++ + + D T + KGF FV++ E A+
Sbjct: 90 AIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTLKHKGFAFVEYEVPEAAQL 149
Query: 435 AQSALNGKLEIVGRTLKV 452
A +N + + GR +KV
Sbjct: 150 ALEQMNSVM-LGGRNIKV 166
Score = 124 (48.7 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 41/157 (26%), Positives = 78/157 (49%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
++YV ++H ++++ ++ +FE FG ++ L D TG+ KG+GF+++ + + A+ A S+
Sbjct: 191 RIYVASVHPDLSDDDIKSVFEAFGRIKSCSLARDPTTGKHKGYGFIEYDKAQSAQDAVSS 250
Query: 439 LNGKLEIVGRTLKVS-SVTDHVGTQDTAAKS----AXXXXXXXXXLALNAQSRALLMQKL 493
+N ++ G+ L+V +VT + A A + AQ L Q
Sbjct: 251 MN-LFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAVAAAAATAKITAQMAWNLSQPE 309
Query: 494 DRT----GIATSIAGS--LGVAPAVNGSAVNQ--QAI 522
+RT ++AG+ LG A G ++ Q QA+
Sbjct: 310 NRTEDFLNCLEAVAGASILGAMTAGTGLSMPQLPQAV 346
Score = 98 (39.6 bits), Expect = 7.7e-11, Sum P(2) = 7.7e-11
Identities = 24/92 (26%), Positives = 47/92 (51%)
Query: 554 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGF---------V 604
S ++L+NM P D D +++G+V EEC K+G V + + + G +
Sbjct: 440 STVMVLRNMVGPE-----DIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEVIVKI 494
Query: 605 YLRFESTEAAASAQRAMHMRWFA-RRLISAIF 635
++ F + A +A++ RWF R++I+ ++
Sbjct: 495 FVEFSAASEMNKAIQALNNRWFGGRKVIAEVY 526
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 157 (60.3 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 35/82 (42%), Positives = 47/82 (57%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
KL+VG L+FN E L F FGP+ V + D ET + +GFGF+ F EHA A A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66
Query: 439 LNGKLEIVGRTLKVSSVTDHVG 460
+NG+ + GR ++V DH G
Sbjct: 67 MNGE-SLDGRQIRV----DHAG 83
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 166 (63.5 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 42/145 (28%), Positives = 71/145 (48%)
Query: 320 YRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDR 378
Y Y++F + A+ + G+ + G+P+ + S + + +SN
Sbjct: 211 YGYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSD 270
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
L++GNL FN L +F +G V ++P +T Q KGFG+VQF+ ++ AKAA A
Sbjct: 271 TLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEA 330
Query: 439 LNGKLEIVGRTLKVSSVTDHVGTQD 463
+NG+ I GR ++ T T +
Sbjct: 331 MNGEY-IEGRPCRLDFSTPRDNTNN 354
Score = 107 (42.7 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
L+VG L +N+ + L++ FE G V ++ ++ TG+ +G+G+V F A+ A +
Sbjct: 170 LFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEM 229
Query: 440 NGKLEIVGRTLKVSSVT 456
GK EI GR + + T
Sbjct: 230 QGK-EIDGRPINLDMST 245
Score = 54 (24.1 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 602 GFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPED 640
GF Y++F S + A +A AM+ + R F P D
Sbjct: 312 GFGYVQFSSVDEAKAALEAMNGEYIEGRPCRLDFSTPRD 350
Score = 52 (23.4 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 211 EPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
+P A E + T+F ++ + + F G V R+IM+R + +S+G G
Sbjct: 159 KPAASTE-EPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYG 212
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 166 (63.5 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 42/145 (28%), Positives = 71/145 (48%)
Query: 320 YRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDR 378
Y Y++F + A+ + G+ + G+P+ + S + + +SN
Sbjct: 211 YGYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSD 270
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
L++GNL FN L +F +G V ++P +T Q KGFG+VQF+ ++ AKAA A
Sbjct: 271 TLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEA 330
Query: 439 LNGKLEIVGRTLKVSSVTDHVGTQD 463
+NG+ I GR ++ T T +
Sbjct: 331 MNGEY-IEGRPCRLDFSTPRDNTNN 354
Score = 107 (42.7 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
L+VG L +N+ + L++ FE G V ++ ++ TG+ +G+G+V F A+ A +
Sbjct: 170 LFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEM 229
Query: 440 NGKLEIVGRTLKVSSVT 456
GK EI GR + + T
Sbjct: 230 QGK-EIDGRPINLDMST 245
Score = 54 (24.1 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 602 GFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPED 640
GF Y++F S + A +A AM+ + R F P D
Sbjct: 312 GFGYVQFSSVDEAKAALEAMNGEYIEGRPCRLDFSTPRD 350
Score = 52 (23.4 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 211 EPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
+P A E + T+F ++ + + F G V R+IM+R + +S+G G
Sbjct: 159 KPAASTE-EPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYG 212
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 155 (59.6 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 35/82 (42%), Positives = 47/82 (57%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
KL+VG L+FN E L F FGP+ V + D ET + +GFGF+ F EHA A A
Sbjct: 7 KLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66
Query: 439 LNGKLEIVGRTLKVSSVTDHVG 460
+NG+ + GR ++V DH G
Sbjct: 67 MNGE-SLDGRQIRV----DHAG 83
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 155 (59.6 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 35/82 (42%), Positives = 47/82 (57%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
KL+VG L+FN E L F FGP+ V + D ET + +GFGF+ F EHA A A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRA 66
Query: 439 LNGKLEIVGRTLKVSSVTDHVG 460
+NG+ + GR ++V DH G
Sbjct: 67 MNGE-SLDGRQIRV----DHAG 83
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 155 (59.6 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 35/82 (42%), Positives = 47/82 (57%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
KL+VG L+FN E L F FGP+ V + D ET + +GFGF+ F EHA A A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66
Query: 439 LNGKLEIVGRTLKVSSVTDHVG 460
+NG+ + GR ++V DH G
Sbjct: 67 MNGE-SLDGRQIRV----DHAG 83
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 155 (59.6 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 32/75 (42%), Positives = 49/75 (65%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
KLYVGNL++ + + L + F +G V+ Q+ +D TG+ +GFGFV+ + A+AA +
Sbjct: 4 KLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAG 63
Query: 439 LNGKLEIVGRTLKVS 453
LNGK E+ GR L V+
Sbjct: 64 LNGK-EMDGRNLMVN 77
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 155 (59.6 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 35/82 (42%), Positives = 47/82 (57%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
KL+VG L+FN E L F FGP+ V + D ET + +GFGF+ F EHA A A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 439 LNGKLEIVGRTLKVSSVTDHVG 460
+NG+ + GR ++V DH G
Sbjct: 67 MNGE-SLDGRQIRV----DHAG 83
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 155 (59.6 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 35/82 (42%), Positives = 47/82 (57%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
KL+VG L+FN E L F FGP+ V + D ET + +GFGF+ F EHA A A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 439 LNGKLEIVGRTLKVSSVTDHVG 460
+NG+ + GR ++V DH G
Sbjct: 67 MNGE-SLDGRQIRV----DHAG 83
>TAIR|locus:2122990 [details] [associations]
symbol:AT4G19610 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14787
OMA:VFREKNV IPI:IPI00517416 RefSeq:NP_193696.3 UniGene:At.50354
ProteinModelPortal:F4JT92 SMR:F4JT92 PRIDE:F4JT92
EnsemblPlants:AT4G19610.1 GeneID:827703 KEGG:ath:AT4G19610
Uniprot:F4JT92
Length = 816
Score = 126 (49.4 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 42/152 (27%), Positives = 72/152 (47%)
Query: 320 YRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKN-LVQSNTSAGGTATGPYGAID 377
Y ++EF V + L G +L G ++++ E +++ V +++ T
Sbjct: 650 YGFVEFDSVETATSVYRDLQGTVLDGHALILRFCENKRSDKVGKDSNKDKPCT------- 702
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 437
KL+V N+ F T+ +LR+LF PFG ++ ++LP GQ G+ FV+F + A A+
Sbjct: 703 -KLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKK-NIGQYAGYAFVEFVTKQEALNAKK 760
Query: 438 ALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSA 469
AL GR L + D + +SA
Sbjct: 761 AL-ASTHFYGRHLVLEWANDDNSMEAIRKRSA 791
Score = 102 (41.0 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 18/51 (35%), Positives = 32/51 (62%)
Query: 214 ADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 264
+D D +F +P ATE ++ E FS GK+ +V L++D+ ++RS+G+
Sbjct: 287 SDDVLDTGRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGI 337
Score = 59 (25.8 bits), Expect = 7.0e-05, Sum P(3) = 7.0e-05
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLP 410
L V NL F TE +L ++F FG ++ + LP
Sbjct: 490 LLVKNLPFASTEKELAQMFGKFGSLDKIILP 520
Score = 56 (24.8 bits), Expect = 7.0e-05, Sum P(3) = 7.0e-05
Identities = 12/51 (23%), Positives = 31/51 (60%)
Query: 586 SKYGRVKHIYVDKRS----AGFVYLRFESTEAAASAQRAM-HMRWFARRLI 631
S +G++K + + K++ AG+ ++ F + + A +A++A+ ++ R L+
Sbjct: 723 SPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKALASTHFYGRHLV 773
Score = 53 (23.7 bits), Expect = 0.00027, Sum P(3) = 0.00027
Identities = 20/67 (29%), Positives = 30/67 (44%)
Query: 380 LYVGNLHFNMTETQLRKLFEPF---GPVELVQLPLDIETGQ--CKGFGFVQFAQLEHAKA 434
L V NL F T+ L+K F G + V + + + G+GFV+F +E A +
Sbjct: 604 LNVKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGFVEFDSVETATS 663
Query: 435 AQSALNG 441
L G
Sbjct: 664 VYRDLQG 670
Score = 48 (22.0 bits), Expect = 0.00043, Sum P(3) = 0.00043
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 591 VKHIYVDKR-SAGFVYLRFESTEAAASAQR 619
+KH +K S+G+ ++ F+S E A S R
Sbjct: 637 IKHKKNEKYLSSGYGFVEFDSVETATSVYR 666
Score = 46 (21.3 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 8/38 (21%), Positives = 19/38 (50%)
Query: 215 DPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRL 252
+ R + + +P +TE+++ + F K G + + L
Sbjct: 482 EKNRSKHILLVKNLPFASTEKELAQMFGKFGSLDKIIL 519
>TAIR|locus:2115280 [details] [associations]
symbol:ATU2AF65A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0042742 "defense
response to bacterium" evidence=IEP] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0000166 GO:GO:0042742 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL161589 GO:GO:0000398 EMBL:Z99708 HSSP:P26368 EMBL:AF462805
EMBL:AY080711 EMBL:AY143980 EMBL:BT000965 EMBL:BX827587
IPI:IPI00524736 IPI:IPI00525889 IPI:IPI00534734 PIR:C85433
RefSeq:NP_195387.1 RefSeq:NP_849509.1 RefSeq:NP_974695.1
UniGene:At.21204 ProteinModelPortal:O23212 SMR:O23212 IntAct:O23212
STRING:O23212 PaxDb:O23212 PRIDE:O23212 EnsemblPlants:AT4G36690.1
GeneID:829822 KEGG:ath:AT4G36690 TAIR:At4g36690 eggNOG:NOG298004
HOGENOM:HOG000180745 InParanoid:O23212 KO:K12837 OMA:EDIRMEA
PhylomeDB:O23212 ProtClustDB:CLSN2915914 Genevestigator:O23212
TIGRFAMs:TIGR01642 Uniprot:O23212
Length = 573
Score = 154 (59.3 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 45/146 (30%), Positives = 74/146 (50%)
Query: 320 YRYIEFYDVMSVPMAIALSGQLLLGQPVMVK-PSEAEKNLVQS----------NTSAGGT 368
+ ++E V A++L G + G PV V+ PS+ +L + N +A G
Sbjct: 288 FAFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGL 347
Query: 369 ATGPYGAIDR--KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQF 426
G G ++ +++VG L + TE+Q+R+L E FG ++ L D ETG KG+ F +
Sbjct: 348 TPGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVY 407
Query: 427 AQLEHAKAAQSALNGKLEIVGRTLKV 452
L A +ALNG +++ +TL V
Sbjct: 408 QDLSVTDIACAALNG-IKMGDKTLTV 432
Score = 67 (28.6 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 20/82 (24%), Positives = 42/82 (51%)
Query: 567 METDPDFDLEIQGDVEEECSKYGRVKHIYVDKRS------AGF--VYLRFESTEAAASAQ 618
+ D ++ +I D+ +E K+G + ++ + + S AG V+L++ T+ + A+
Sbjct: 485 LRDDEEYG-DIMEDMRQEGGKFGALTNVVIPRPSPNGEPVAGLGKVFLKYADTDGSTRAR 543
Query: 619 RAMHMRWFARRLISAIFMKPED 640
M+ R F + A++ PED
Sbjct: 544 FGMNGRKFGGNEVVAVYY-PED 564
>UNIPROTKB|Q5QP22 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AL357374
UniGene:Hs.282901 HGNC:HGNC:15923 HOGENOM:HOG000236253
ChiTaRS:RBM39 IPI:IPI00644764 SMR:Q5QP22 STRING:Q5QP22
Ensembl:ENST00000434927 Uniprot:Q5QP22
Length = 193
Score = 152 (58.6 bits), Expect = 3.9e-10, P = 3.9e-10
Identities = 35/61 (57%), Positives = 40/61 (65%)
Query: 204 KEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR 260
K+K V EP PE RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRR
Sbjct: 133 KDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 192
Query: 261 S 261
S
Sbjct: 193 S 193
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 129 (50.5 bits), Expect = 4.4e-10, Sum P(3) = 4.4e-10
Identities = 31/83 (37%), Positives = 48/83 (57%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
+Y+ NL +M + +L+ LF FGP V++ D E+G+ KGFGFV F + E A+ A +
Sbjct: 193 VYIKNLGEDMDDERLQDLFSRFGPALSVKVMTD-ESGKSKGFGFVSFERHEDARKAVDEM 251
Query: 440 NGKLEIVGRTLKVSSVTDHVGTQ 462
NGK ++ G+ + V V Q
Sbjct: 252 NGK-DLNGKQIYVGRAQKKVERQ 273
Score = 118 (46.6 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
LYV NL + + +LRK F PFG + ++ + E G+ KGFGFV F+ E A A + +
Sbjct: 306 LYVKNLDDGIDDERLRKEFSPFGTITSAKVTM--EGGRSKGFGFVCFSSPEEATKAVTEM 363
Query: 440 NGKL 443
NG++
Sbjct: 364 NGRI 367
Score = 114 (45.2 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
LYVG+LH ++TE L + F P GP+ +++ D T + G+ V F QLE A+ A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDTM 72
Query: 440 NGKLEIVGRTLKV 452
N + I G+ +++
Sbjct: 73 NFDV-IKGKPVRI 84
Score = 79 (32.9 bits), Expect = 4.4e-10, Sum P(3) = 4.4e-10
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 214 ADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKG 263
+DP +++ + TE +YE FS AG + +R+ DR +RRS G
Sbjct: 4 SDPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLG 53
Score = 78 (32.5 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 30/125 (24%), Positives = 54/125 (43%)
Query: 318 VSYRYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAI 376
+ Y + F + A+ ++ ++ G+PV + S+ + +L +S
Sbjct: 52 LGYASVNFQQLEDAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG------------ 99
Query: 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 436
++V NL ++ L F FG + ++ D E G KG+GFV F E A+ A
Sbjct: 100 --NIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEEAERAI 155
Query: 437 SALNG 441
+NG
Sbjct: 156 EKMNG 160
Score = 55 (24.4 bits), Expect = 4.4e-10, Sum P(3) = 4.4e-10
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 581 VEEECSKYGRVKHIYVDK---RSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 636
+ +E S +G + V RS GF ++ F S E A A M+ R A + L A+
Sbjct: 320 LRKEFSPFGTITSAKVTMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 379
Query: 637 KPEDYEA 643
+ E+ +A
Sbjct: 380 RKEERQA 386
Score = 52 (23.4 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
+F + + +Y+ FS G + +++ D N SKG G
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENG--SKGYG 141
>UNIPROTKB|Q48A10 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0724 RefSeq:YP_267104.1 ProteinModelPortal:Q48A10
STRING:Q48A10 GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 151 (58.2 bits), Expect = 5.0e-10, P = 5.0e-10
Identities = 51/147 (34%), Positives = 69/147 (46%)
Query: 311 LDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQ----PVMV-KPSEAEKNLVQSNTSA 365
L + V++ I + +VP + L L+ P++ PS + SNT A
Sbjct: 6 LQTVIIAVAFAIIAYIVTFAVPASSILIASLVFVSAFLAPLLTGSPSTNTASSTSSNTIA 65
Query: 366 GGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQ 425
R LYVGNL + ET +R+LF G V V+L D TG+ +GFGFV+
Sbjct: 66 SDEDV-------RTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVE 118
Query: 426 FAQLEHAKAAQSALNGKLEIVGRTLKV 452
A + KA SALN E RTLKV
Sbjct: 119 MASDDLDKAI-SALNDT-EFQQRTLKV 143
Score = 105 (42.0 bits), Expect = 0.00081, P = 0.00081
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDD 273
+ D RT++ +P +A E V E FS+ G V VRL+ D+++ + +G G M DD
Sbjct: 67 DEDVRTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVEMASDD 123
>TIGR_CMR|CPS_0338 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0724
RefSeq:YP_267104.1 ProteinModelPortal:Q48A10 STRING:Q48A10
GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 151 (58.2 bits), Expect = 5.0e-10, P = 5.0e-10
Identities = 51/147 (34%), Positives = 69/147 (46%)
Query: 311 LDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQ----PVMV-KPSEAEKNLVQSNTSA 365
L + V++ I + +VP + L L+ P++ PS + SNT A
Sbjct: 6 LQTVIIAVAFAIIAYIVTFAVPASSILIASLVFVSAFLAPLLTGSPSTNTASSTSSNTIA 65
Query: 366 GGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQ 425
R LYVGNL + ET +R+LF G V V+L D TG+ +GFGFV+
Sbjct: 66 SDEDV-------RTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVE 118
Query: 426 FAQLEHAKAAQSALNGKLEIVGRTLKV 452
A + KA SALN E RTLKV
Sbjct: 119 MASDDLDKAI-SALNDT-EFQQRTLKV 143
Score = 105 (42.0 bits), Expect = 0.00081, P = 0.00081
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDD 273
+ D RT++ +P +A E V E FS+ G V VRL+ D+++ + +G G M DD
Sbjct: 67 DEDVRTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVEMASDD 123
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 151 (58.2 bits), Expect = 5.0e-10, P = 5.0e-10
Identities = 34/82 (41%), Positives = 46/82 (56%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
KL+VG L+FN E L F FGP+ V + D ET + +GFGF+ F EHA A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRA 66
Query: 439 LNGKLEIVGRTLKVSSVTDHVG 460
+NG+ + GR ++V DH G
Sbjct: 67 MNGE-SLDGRQIRV----DHAG 83
>WB|WBGene00006697 [details] [associations]
symbol:uaf-1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0009790 "embryo
development" evidence=IMP] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0030628 "pre-mRNA 3'-splice site binding"
evidence=IDA] [GO:0048589 "developmental growth" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0048589 GO:GO:0010172 GO:GO:0000398
GO:GO:0040020 GO:GO:0040022 EMBL:FO080242
GeneTree:ENSGT00690000102089 GO:GO:0030628 eggNOG:NOG298004
HOGENOM:HOG000180745 KO:K12837 TIGRFAMs:TIGR01642 EMBL:U79157
RefSeq:NP_001022967.1 RefSeq:NP_001022969.1 RefSeq:NP_497326.2
UniGene:Cel.18058 ProteinModelPortal:P90978 SMR:P90978
IntAct:P90978 MINT:MINT-1062639 STRING:P90978 PaxDb:P90978
PRIDE:P90978 EnsemblMetazoa:Y92C3B.2a GeneID:175270
KEGG:cel:CELE_Y92C3B.2 UCSC:Y92C3B.2b.1 CTD:175270
WormBase:Y92C3B.2a WormBase:Y92C3B.2b WormBase:Y92C3B.2c
InParanoid:P90978 OMA:TDGSTRA NextBio:887470 ArrayExpress:P90978
Uniprot:P90978
Length = 496
Score = 111 (44.1 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 33/99 (33%), Positives = 49/99 (49%)
Query: 551 GSPSECLLLKNMF-DPAMETDPDFDLEIQGDVEEECSKYGRVKHI-----YVDKR--SAG 602
G +E L L NM + ++ D +++ EI DV +ECSKYG V+ + Y D G
Sbjct: 394 GRATEILCLMNMVTEDELKADDEYE-EILEDVRDECSKYGIVRSLEIPRPYEDHPVPGVG 452
Query: 603 FVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDY 641
V++ F ST AQ A+ R FA R + + + Y
Sbjct: 453 KVFVEFASTSDCQRAQAALTGRKFANRTVVTSYYDVDKY 491
Score = 109 (43.4 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 32/126 (25%), Positives = 60/126 (47%)
Query: 319 SYRYIEFYDVMSVPMAIALSGQLLLGQPVMVK-PSEAE--KNLVQSNTSAGGTATGPYGA 375
++ +IEF + +A G +GQ + V+ P + + +N N+ + A
Sbjct: 231 NFAFIEFRSIDETTAGMAFDGINFMGQQLKVRRPRDYQPSQNTFDMNSRMPVSTIVVDSA 290
Query: 376 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAA 435
K+++G L +TE Q+++L FGP++ L +D + G KG+ F ++ A
Sbjct: 291 --NKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQ-GNSKGYAFAEYLDPTLTDQA 347
Query: 436 QSALNG 441
+ LNG
Sbjct: 348 IAGLNG 353
Score = 94 (38.1 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 34/131 (25%), Positives = 56/131 (42%)
Query: 346 PVMVKPSEAEKNLVQSNTSAGGTATGPYGAID-RKLYVGNLHFNMTETQLRKLFE----- 399
P+ K +A + + + + GP R+LYVGN+ F E + F
Sbjct: 151 PMEYKNMQAAGQVPRGSVQSAVPVVGPSVTCQSRRLYVGNIPFGCNEEAMLDFFNQQMHL 210
Query: 400 ------PFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 453
P P+ L Q+ LD K F F++F ++ A A +G + +G+ LKV
Sbjct: 211 CGLAQAPGNPILLCQINLD------KNFAFIEFRSIDETTAGM-AFDG-INFMGQQLKVR 262
Query: 454 SVTDHVGTQDT 464
D+ +Q+T
Sbjct: 263 RPRDYQPSQNT 273
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 147 (56.8 bits), Expect = 9.9e-10, Sum P(2) = 9.9e-10
Identities = 42/147 (28%), Positives = 71/147 (48%)
Query: 320 YRYIEFYDVMSVPMAIALSGQLLL-GQPVMV-----KPSEAEKNLVQSNTSAGGTATGPY 373
Y Y++F + A+A +G + G+ V + +P+ + Q + G + P
Sbjct: 306 YGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPS 365
Query: 374 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAK 433
+ +VGNL FN TE L F G ++ ++LP D ++G+ KGFG+V F+ ++ AK
Sbjct: 366 DTV----FVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAK 421
Query: 434 AAQSALNGKLEIVGRTLKVSSVTDHVG 460
+NG I GR ++ T G
Sbjct: 422 KCVE-MNGHF-IAGRPCRLDFSTPRTG 446
Score = 119 (46.9 bits), Expect = 0.00049, P = 0.00049
Identities = 27/73 (36%), Positives = 46/73 (63%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
++VG L +N+ + L + FE +G + ++ +D ++G+ KG+G+V F E AKAA +A
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAA- 323
Query: 440 NGKLEIVGRTLKV 452
NG EI GR + +
Sbjct: 324 NGTKEIDGRMVNL 336
Score = 68 (29.0 bits), Expect = 9.9e-10, Sum P(2) = 9.9e-10
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 208 EVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
++ +P D + TVF ++ ++ + + F + G + R+IMD S RSKG G
Sbjct: 251 KITKPSQD-SNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYG 307
>ASPGD|ASPL0000073559 [details] [associations]
symbol:AN10574 species:162425 "Emericella nidulans"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 EMBL:BN001303 ProteinModelPortal:C8VB25
EnsemblFungi:CADANIAT00005779 OMA:ERATRHC Uniprot:C8VB25
Length = 1290
Score = 175 (66.7 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 78/279 (27%), Positives = 129/279 (46%)
Query: 213 EADP-----ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSR-------- 259
EA+P +R+ TV +P TE V +FF G + V+++ + +
Sbjct: 816 EAEPVALRRDRENSTVVVKNLPQGTTEHKVRQFFRDCGAINGVKMMPGEDGKSEVAMIEF 875
Query: 260 RSKGVGNAIMMRD----DGNTL--HSCLINSCCVIKFFLVAEVGMV--FFLLGDETYTVL 311
++ A RD DGNT+ H + V F A+ + F E +
Sbjct: 876 NTRDDAAAAQTRDQKTFDGNTIQVHFGSETTLFVTNFPPTADENYIRDLFSKYGEIIDIR 935
Query: 312 DPATVLVSYR---YIEFYDVMSVPMAIALSGQLL-LGQPVMVKPSEAEKNLVQSNTSAGG 367
P+ ++R Y++F ++ A+AL G + G ++VK S+ + Q
Sbjct: 936 FPSLKYNTHRRFCYLQFKTSVAAHSALALDGSAVGNGLHLVVKISDPSRK--QDRN---- 989
Query: 368 TATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFA 427
GP R+++V N++++ +E L++LF FG VELV+LP ++ G KGFG+V F+
Sbjct: 990 ---GPIYE-GREIHVSNVNWSASEDDLKELFSRFGTVELVRLPRKVDGGS-KGFGYVVFS 1044
Query: 428 QLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQDTAA 466
E A AA A++ + E GR L V V+ G + AA
Sbjct: 1045 SKEEATAAL-AMHEQ-EFRGRPLHVK-VSAPQGAKRIAA 1080
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 147 (56.8 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 28/82 (34%), Positives = 52/82 (63%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
K+YVG+L +++T +L+ F +G +E +L +D ETG+ KGF F+ + + A+ A S
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 439 LNGKLEIVGRTLKVSSVTDHVG 460
NG +++ GR ++V+ ++ G
Sbjct: 79 ANG-IDLQGRKIRVNIARENTG 99
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 147 (56.8 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 28/82 (34%), Positives = 52/82 (63%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
K+YVG+L +++T +L+ F +G +E +L +D ETG+ KGF F+ + + A+ A S
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 439 LNGKLEIVGRTLKVSSVTDHVG 460
NG +++ GR ++V+ ++ G
Sbjct: 79 ANG-IDLQGRKIRVNIARENTG 99
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 162 (62.1 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 35/78 (44%), Positives = 50/78 (64%)
Query: 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 436
D KL+VGNL FN+ QL +LFE G VE+V++ D TG+ +GFGFV + + +AA
Sbjct: 90 DLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAA 149
Query: 437 SALNGKLEIVGRTLKVSS 454
NG E+ GR L+V++
Sbjct: 150 QQFNG-YELDGRPLRVNA 166
Score = 121 (47.7 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 39/146 (26%), Positives = 69/146 (47%)
Query: 320 YRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVK----PSEAEKNLVQSNTSAGGTATGPYG 374
+ ++ V V A +G L G+P+ V P + E + S+ G++ YG
Sbjct: 134 FGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYG 193
Query: 375 A-------IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFA 427
++YVGNL + + + L LF G V ++ D ++G+ KGFGFV +
Sbjct: 194 GGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYD 253
Query: 428 QLEHAKAAQSALNGKLEIVGRTLKVS 453
+ + A +L+G ++ GR ++VS
Sbjct: 254 SSQEVQNAIKSLDGA-DLDGRQIRVS 278
Score = 66 (28.3 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 16/62 (25%), Positives = 26/62 (41%)
Query: 208 EVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNA 267
+V P+ +F +P + + F AG V V +I D+ + RS+G G
Sbjct: 78 DVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFV 137
Query: 268 IM 269
M
Sbjct: 138 TM 139
Score = 38 (18.4 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 11/46 (23%), Positives = 26/46 (56%)
Query: 581 VEEECSKYGRV--KHIYVDK---RSAGFVYLRFESTEAAASAQRAM 621
+E S+ G+V + D+ RS GF ++ ++S++ +A +++
Sbjct: 220 LESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 157 (60.3 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 40/113 (35%), Positives = 63/113 (55%)
Query: 344 GQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGP 403
G+P K K Q+ + G T P D L+VGNL F+ E + ++F P G
Sbjct: 354 GRPAN-KDQGGFKERAQNRARSFGDQTSPES--DT-LFVGNLPFSANEDSVHEVFGPQGN 409
Query: 404 VELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456
V ++LP D+E+G+ KGFG+VQ++ ++ A+ A + L G EI GR +++ T
Sbjct: 410 VLGIRLPTDMESGRPKGFGYVQYSSVDEARKAYNELQGA-EIDGRPIRLDFST 461
Score = 142 (55.0 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 33/114 (28%), Positives = 58/114 (50%)
Query: 350 KPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQL 409
KP++++K + +A + L+VGNL +N+TE L + FE FG + ++
Sbjct: 249 KPADSKKRKAEEEPAAASKKSKTEEGASANLFVGNLSWNVTEEWLHQEFEQFGELS-ARI 307
Query: 410 PLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQD 463
+ +TG+ +GFG+V+F A A A+ + EI GR + + T +D
Sbjct: 308 MTERDTGRSRGFGYVEFTNAADAAKAYEAMK-EHEIDGRKINLDYATGRPANKD 360
Score = 55 (24.4 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 16/68 (23%), Positives = 35/68 (51%)
Query: 204 KEKKEVVEPEADPERDQR------TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRN 257
K++K EP A ++ + +F + TE +++ F + G++ R++ +R+
Sbjct: 254 KKRKAEEEPAAASKKSKTEEGASANLFVGNLSWNVTEEWLHQEFEQFGEL-SARIMTERD 312
Query: 258 SRRSKGVG 265
+ RS+G G
Sbjct: 313 TGRSRGFG 320
Score = 37 (18.1 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 11/40 (27%), Positives = 16/40 (40%)
Query: 599 RSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKP 638
R GF Y+++ S + A A + R I F P
Sbjct: 423 RPKGFGYVQYSSVDEARKAYNELQGAEIDGRPIRLDFSTP 462
>UNIPROTKB|F5GXV8 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI00556348 ProteinModelPortal:F5GXV8 SMR:F5GXV8
Ensembl:ENST00000541475 ArrayExpress:F5GXV8 Bgee:F5GXV8
Uniprot:F5GXV8
Length = 149
Score = 128 (50.1 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 35/91 (38%), Positives = 50/91 (54%)
Query: 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 436
DR L+VGNL +TE L +LF GPV V++P D + G+ K F FV F A
Sbjct: 9 DRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKD-KDGKPKQFAFVNFKHEVSVPYAM 67
Query: 437 SALNGKLEIVGRTLKVS--SVTDHVGTQDTA 465
+ LNG +++ GR +K+ S + H QD +
Sbjct: 68 NLLNG-IKLYGRPIKIQFRSGSSHA-PQDVS 96
Score = 38 (18.4 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 610 STEAAASAQRAMHMRWFARRLISAIFMKPEDYE 642
ST ++ +R M + ++I F PE+++
Sbjct: 111 STSPSSRYERTMDNMTSSAQIIQRSFSSPENFQ 143
>UNIPROTKB|I3L521 [details] [associations]
symbol:I3L521 "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP002373
Ensembl:ENST00000544347 Uniprot:I3L521
Length = 148
Score = 128 (50.1 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 35/91 (38%), Positives = 50/91 (54%)
Query: 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 436
DR L+VGNL +TE L +LF GPV V++P D + G+ K F FV F A
Sbjct: 6 DRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKD-KDGKPKQFAFVNFKHEVSVPYAM 64
Query: 437 SALNGKLEIVGRTLKVS--SVTDHVGTQDTA 465
+ LNG +++ GR +K+ S + H QD +
Sbjct: 65 NLLNG-IKLYGRPIKIQFRSGSSHA-PQDVS 93
Score = 38 (18.4 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 610 STEAAASAQRAMHMRWFARRLISAIFMKPEDYE 642
ST ++ +R M + ++I F PE+++
Sbjct: 108 STSPSSRYERTMDNMTSSAQIIQRSFSSPENFQ 140
>UNIPROTKB|F1NHX3 [details] [associations]
symbol:LEMD3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005639
"integral to nuclear inner membrane" evidence=IEA]
InterPro:IPR012677 InterPro:IPR018996 Pfam:PF09402 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005639 GeneTree:ENSGT00530000063791
EMBL:AADN02009903 EMBL:AADN02009904 IPI:IPI00590059
Ensembl:ENSGALT00000016052 ArrayExpress:F1NHX3 Uniprot:F1NHX3
Length = 406
Score = 166 (63.5 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 36/95 (37%), Positives = 55/95 (57%)
Query: 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFES 610
S + CL ++NMFDP ME + L IQ + E+CS + HI VDK S G VY++ S
Sbjct: 276 SLTPCLKIRNMFDPVMEIGDHWHLAIQEAILEKCSDNDGIVHIAVDKNSREGCVYVKCLS 335
Query: 611 TEAAASAQRAMHMRWFARRLISAIFMKPEDYEAKF 645
E A A +A+H WF +L++ +++ + Y +F
Sbjct: 336 PEYAGKAFKALHGSWFDGKLVTVKYLRLDRYHHRF 370
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 120 (47.3 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 29/90 (32%), Positives = 48/90 (53%)
Query: 350 KPSEAEKNLVQSNTSAGGTATGPYGAI----D--RKLYVGNLHFNMTETQLRKLFEPFGP 403
+P EK L Q G P A+ D +K++VG L+ TE ++R+ F FG
Sbjct: 50 EPGSVEKVLEQKEHRLDGRLIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGE 109
Query: 404 VELVQLPLDIETGQCKGFGFVQFAQLEHAK 433
+E ++LP+D +T + +GF F+ F + + K
Sbjct: 110 IEAIELPMDPKTNKRRGFVFITFKEEDPVK 139
Score = 78 (32.5 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 15/43 (34%), Positives = 30/43 (69%)
Query: 233 TERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGN 275
+++D+ ++F+K G+V D + MD N+ RS+G G I+ ++ G+
Sbjct: 12 SKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFG-FILFKEPGS 53
>UNIPROTKB|Q9KVI6 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 145 (56.1 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 37/88 (42%), Positives = 51/88 (57%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 437
+ LYVGNL + E+ +++LF FG V V+L D TG+ +GFGFV A + A+ A
Sbjct: 64 KTLYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRGFGFVVIAASQ-AQTAID 122
Query: 438 ALNGKLEIVGRTLKVSSVTDHVGTQDTA 465
ALN K E + RTLKV D ++ A
Sbjct: 123 ALNEK-EYMQRTLKVRIANDPKSDEEMA 149
>TIGR_CMR|VC_0159 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 145 (56.1 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 37/88 (42%), Positives = 51/88 (57%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 437
+ LYVGNL + E+ +++LF FG V V+L D TG+ +GFGFV A + A+ A
Sbjct: 64 KTLYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRGFGFVVIAASQ-AQTAID 122
Query: 438 ALNGKLEIVGRTLKVSSVTDHVGTQDTA 465
ALN K E + RTLKV D ++ A
Sbjct: 123 ALNEK-EYMQRTLKVRIANDPKSDEEMA 149
>UNIPROTKB|F1P1R2 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00822335
Ensembl:ENSGALT00000013489 Uniprot:F1P1R2
Length = 621
Score = 135 (52.6 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 49/158 (31%), Positives = 77/158 (48%)
Query: 312 DPATVLVS--YRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSE-AEKNLVQSNTSAGG 367
D A L+S + ++E+ S A+ L G ++ G + VK SE A + V+S+
Sbjct: 429 DKAGTLLSMGFGFVEYKKPESAQKALRRLQGCIVDGHKLEVKISERAVRPAVKSSRKKQT 488
Query: 368 TATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIE-TGQCKGFGFVQF 426
K+ V N+ F T ++R+LF FG ++ V+LP + TG +GFGFV F
Sbjct: 489 VKKQKTS----KILVRNIPFQATVREIRELFSTFGELKTVRLPKKMAGTGSHRGFGFVDF 544
Query: 427 AQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQDT 464
+ AK A +AL + GR L V + T++T
Sbjct: 545 LTKQDAKKAFNALCHSTHLYGRRL----VLEWADTEET 578
Score = 126 (49.4 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
+L+V NL F TE L K+F +GP+ + P+D T + KGF F+ + EHA A +
Sbjct: 79 RLFVRNLPFTSTEEDLEKIFSKYGPLSEIHFPIDRLTKKPKGFAFITYMIPEHAVKAYAE 138
Query: 439 LNGKLEIVGRTL 450
++G++ GR +
Sbjct: 139 MDGQV-FQGRMM 149
Score = 80 (33.2 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 203 YKEKKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSK 262
++ K E E D R +F +P +TE D+ + FSK G + ++ +DR +++ K
Sbjct: 61 WQRMKRDDEEEEDLSESGR-LFVRNLPFTSTEEDLEKIFSKYGPLSEIHFPIDRLTKKPK 119
Query: 263 G 263
G
Sbjct: 120 G 120
Score = 52 (23.4 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 578 QGDVEEECSKYGRVKHIYVDKR--------SAGFVYLRFESTEAAASAQRAM 621
+G ++E SK G VK + K+ S GF ++ ++ E+A A R +
Sbjct: 406 EGTLKETFSKVGAVKSCTISKKKDKAGTLLSMGFGFVEYKKPESAQKALRRL 457
Score = 50 (22.7 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 205 EKKEVVEPEADPERDQR------TVFAYQMPLKATERDVYEFFSKAGKVR 248
E+ + E D E D+ T+F + TE + E FSK G V+
Sbjct: 371 EETSAQDEEEDEEEDEEESIPGCTLFIKNLNFTTTEGTLKETFSKVGAVK 420
>UNIPROTKB|F1NZN4 [details] [associations]
symbol:LEMD3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005639
"integral to nuclear inner membrane" evidence=IEA] [GO:0030512
"negative regulation of transforming growth factor beta receptor
signaling pathway" evidence=IEA] [GO:0030514 "negative regulation
of BMP signaling pathway" evidence=IEA] [GO:0032926 "negative
regulation of activin receptor signaling pathway" evidence=IEA]
[GO:0035914 "skeletal muscle cell differentiation" evidence=IEA]
[GO:0051726 "regulation of cell cycle" evidence=IEA]
InterPro:IPR012677 InterPro:IPR018996 Pfam:PF09402 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0051726 GO:GO:0032926 GO:GO:0030512
GO:GO:0030514 GO:GO:0005639 GeneTree:ENSGT00530000063791
EMBL:AADN02009903 EMBL:AADN02009904 IPI:IPI00822008
Ensembl:ENSGALT00000038639 OMA:VAGKHEC ArrayExpress:F1NZN4
Uniprot:F1NZN4
Length = 436
Score = 166 (63.5 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 36/95 (37%), Positives = 55/95 (57%)
Query: 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFES 610
S + CL ++NMFDP ME + L IQ + E+CS + HI VDK S G VY++ S
Sbjct: 306 SLTPCLKIRNMFDPVMEIGDHWHLAIQEAILEKCSDNDGIVHIAVDKNSREGCVYVKCLS 365
Query: 611 TEAAASAQRAMHMRWFARRLISAIFMKPEDYEAKF 645
E A A +A+H WF +L++ +++ + Y +F
Sbjct: 366 PEYAGKAFKALHGSWFDGKLVTVKYLRLDRYHHRF 400
>FB|FBgn0028577 [details] [associations]
symbol:pUf68 "poly U binding factor 68kD" species:7227
"Drosophila melanogaster" [GO:0008266 "poly(U) RNA binding"
evidence=ISS;NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS;IMP;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0006376 "mRNA splice site selection" evidence=NAS;IMP]
[GO:0007282 "cystoblast division" evidence=IMP] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC;IDA] [GO:0051726 "regulation of
cell cycle" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043234 "protein complex" evidence=IPI]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0001558
"regulation of cell growth" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0043234
EMBL:AE014296 GO:GO:0008266 GO:GO:0022008 GO:GO:0000166
GO:GO:0001558 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0048477
GO:GO:0071011 GO:GO:0071013 GO:GO:0007282 eggNOG:COG0724
GO:GO:0000380 GO:GO:0006376 GO:GO:0000381
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
KO:K12838 OMA:CLQQVNG EMBL:AF190745 EMBL:AF479079 EMBL:AY061006
EMBL:BT003317 RefSeq:NP_001163315.1 RefSeq:NP_001163316.1
RefSeq:NP_001163317.1 RefSeq:NP_001163318.1 RefSeq:NP_001163319.1
RefSeq:NP_001163320.1 RefSeq:NP_525123.2 RefSeq:NP_728610.1
RefSeq:NP_728611.1 RefSeq:NP_728612.1 UniGene:Dm.7331
ProteinModelPortal:Q8T6B9 SMR:Q8T6B9 IntAct:Q8T6B9 MINT:MINT-742668
STRING:Q8T6B9 PaxDb:Q8T6B9 EnsemblMetazoa:FBtr0072709 GeneID:38173
KEGG:dme:Dmel_CG12085 CTD:38173 FlyBase:FBgn0028577
InParanoid:Q8T6B9 OrthoDB:EOG40RXXN PhylomeDB:Q8T6B9 ChiTaRS:pUf68
GenomeRNAi:38173 NextBio:807323 Bgee:Q8T6B9 GermOnline:CG12085
Uniprot:Q8T6B9
Length = 637
Score = 133 (51.9 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
++YVG++ F + E +R F PFGP++ + + D T + KGF FV++ E A+ A
Sbjct: 131 RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 190
Query: 439 LNGKLEIVGRTLKV 452
+NG L + GR +KV
Sbjct: 191 MNGAL-MGGRNIKV 203
Score = 116 (45.9 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 47/216 (21%), Positives = 96/216 (44%)
Query: 312 DPATVL-VSYRYIEFYDVMSVPMAIA-LSGQLLLGQPVMV-KPSEAEKNLVQSNTSAGGT 368
DP T + ++E+ +A+ ++G L+ G+ + V +PS N+ Q+
Sbjct: 164 DPITQKHKGFAFVEYEIPEGAQLALEQMNGALMGGRNIKVGRPS----NMPQAQQVIDEV 219
Query: 369 ATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQ 428
++YV ++H +++E ++ +FE FGP+ +L KG+GF+++A
Sbjct: 220 QEEAKSF--NRIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYAN 277
Query: 429 ---LEHAKAAQSA--LNGKLEIVGRTLKVSSVTDHVGTQDT--AAKSAXXXXXXXXXLAL 481
++ A A+ + L G+L VGR++ + T T A + AL
Sbjct: 278 KQAMDEAIASMNLFDLGGQLLRVGRSITPPNALACPTTNSTMPTAAAVAAAAATAKIQAL 337
Query: 482 NAQSRALLMQKLDRTGI--ATSIAGSLGVAPAVNGS 515
+A + ++ T + A ++ +G P V+ +
Sbjct: 338 DAVASNAVLGLSQNTPVMAAGAVVTKVGAMPVVSAA 373
Score = 82 (33.9 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 27/95 (28%), Positives = 45/95 (47%)
Query: 554 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYV---------DKRSAGFV 604
S ++L+NM P D D +Q +++EECSK+G V + + D A +
Sbjct: 536 SRVIILRNMVGPE-----DVDETLQEEIQEECSKFGTVSRVIIFNEKQTENEDDDEAEII 590
Query: 605 YLRFESTEAAASAQR---AMHMRWFA-RRLISAIF 635
F A A A R A+ R+F RR+++ ++
Sbjct: 591 VKIFVEFSAGAEAMRGKEALDGRFFGGRRVVAELY 625
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 144 (55.7 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 41/99 (41%), Positives = 54/99 (54%)
Query: 359 VQSNTS-AGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQ 417
+ S TS AG TGP GA ++V NL E+ L +LF PFG V V++ D T +
Sbjct: 257 IDSMTSLAGVNLTGPTGA-GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNK 315
Query: 418 CKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456
CKGFGFV + A A ++LNG + R L+VS T
Sbjct: 316 CKGFGFVTMTNYDEAAMAIASLNG-YRLGDRVLQVSFKT 353
Score = 122 (48.0 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 37/110 (33%), Positives = 53/110 (48%)
Query: 348 MVKPSEAEKNLVQSNTSA-GGTATGPYGAID---RKLYVGNLHFNMTETQLRKLFEPFGP 403
++ E + + S TS G GA D L V L NMT+ + + LF G
Sbjct: 4 IISTMETQVSNGPSGTSLPNGPVISTNGATDDSKTNLIVNYLPQNMTQEEFKSLFGSIGE 63
Query: 404 VELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 453
+E +L D TGQ G+GFV + A A + LNG L++ +T+KVS
Sbjct: 64 IESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNG-LKLQTKTIKVS 112
Score = 62 (26.9 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 15/61 (24%), Positives = 33/61 (54%)
Query: 206 KKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDR-NSRRSKGV 264
K P + RD ++ +P +++D+ + FS+ G++ R+++D+ + S+GV
Sbjct: 110 KVSYARPSSASIRDAN-LYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGISRGV 168
Query: 265 G 265
G
Sbjct: 169 G 169
Score = 57 (25.1 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 578 QGDVEEECSKYGRV--KHIYVDKRSAGFV----YLRFESTEAAASAQRAMH 622
Q D+E+ S+YGR+ I VD+ +AG ++RF+ A A + ++
Sbjct: 137 QKDMEQLFSQYGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLN 187
Score = 54 (24.1 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 219 DQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
D +T + +P T+ + F G++ +L+ D+ + +S G G
Sbjct: 35 DSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYG 82
>UNIPROTKB|I3LQ36 [details] [associations]
symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU210877
Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
Length = 161
Score = 144 (55.7 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 35/82 (42%), Positives = 45/82 (54%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
KL+VG L+FN E L F FGP+ V + D ET + +GFGF+ F EHA A A
Sbjct: 7 KLFVGGLNFNTYEQALEDHFSSFGPIFEVVVVKDWETRRSQGFGFITFTNPEHASNAMRA 66
Query: 439 LNGKLEIVGRTLKVSSVTDHVG 460
NG+ + GR + V DH G
Sbjct: 67 TNGE-SLDGRQIHV----DHAG 83
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 128 (50.1 bits), Expect = 3.4e-09, Sum P(3) = 3.4e-09
Identities = 43/144 (29%), Positives = 68/144 (47%)
Query: 320 YRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDR 378
Y ++ F + AI ++G LL + V V ++ K + G A
Sbjct: 140 YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK---EREAELGARAKE-----FT 191
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
+Y+ N +M + +L+ LF FGP V++ D E+G+ KGFGFV F + E A+ A
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 439 LNGKLEIVGRTLKVSSVTDHVGTQ 462
+NGK E+ G+ + V V Q
Sbjct: 251 MNGK-ELNGKQIYVGRAQKKVERQ 273
Score = 117 (46.2 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
LYV NL + + +LRK F PFG + ++ + E G+ KGFGFV F+ E A A + +
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 440 NGKL 443
NG++
Sbjct: 354 NGRI 357
Score = 85 (35.0 bits), Expect = 0.00016, Sum P(3) = 0.00016
Identities = 31/127 (24%), Positives = 55/127 (43%)
Query: 318 VSYRYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAI 376
+ Y Y+ F A+ ++ ++ G+PV + S+ + +L +S
Sbjct: 52 LGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG------------ 99
Query: 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 436
+++ NL ++ L F FG + ++ D E G KG+GFV F E A+ A
Sbjct: 100 --NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 437 SALNGKL 443
+NG L
Sbjct: 156 EKMNGML 162
Score = 71 (30.1 bits), Expect = 3.4e-09, Sum P(3) = 3.4e-09
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 210 VEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKG 263
+ P A P +++ + ATE +YE FS AG + +R+ D +RRS G
Sbjct: 1 MNPSA-PSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLG 53
Score = 55 (24.4 bits), Expect = 3.4e-09, Sum P(3) = 3.4e-09
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 581 VEEECSKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 636
+ +E S +G + K + RS GF ++ F S E A A M+ R A + L A+
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 637 KPEDYEA 643
+ E+ +A
Sbjct: 370 RKEERQA 376
Score = 50 (22.7 bits), Expect = 4.3e-07, Sum P(3) = 4.3e-07
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
+F + + +Y+ FS G + +++ D N SKG G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYG 141
>UNIPROTKB|J9NVV1 [details] [associations]
symbol:LEMD3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005639 "integral to nuclear inner membrane"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 InterPro:IPR018996 Pfam:PF09402 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005639 GeneTree:ENSGT00530000063791
EMBL:AAEX03007007 Ensembl:ENSCAFT00000048719 Uniprot:J9NVV1
Length = 615
Score = 167 (63.8 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 36/95 (37%), Positives = 55/95 (57%)
Query: 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFES 610
S + CL ++NMFDP ME + L IQ + E+CS + HI VDK S G VY++ S
Sbjct: 485 SLTPCLKIRNMFDPVMEIGDQWHLAIQEAILEKCSDNDGIVHIAVDKNSREGCVYVKCLS 544
Query: 611 TEAAASAQRAMHMRWFARRLISAIFMKPEDYEAKF 645
E A A +A+H WF +L++ +++ + Y +F
Sbjct: 545 PEYAGKAFKALHGSWFDGKLVTVKYLRLDRYHHRF 579
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 143 (55.4 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
KL+VG L F+ E L ++F +G + V + D ET + +GFGFV F ++ AK A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 439 LNGKLEIVGRTLKV 452
+NGK + GR ++V
Sbjct: 67 MNGK-SVDGRQIRV 79
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 143 (55.4 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
KL+VG L F+ E L ++F +G + V + D ET + +GFGFV F ++ AK A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 439 LNGKLEIVGRTLKV 452
+NGK + GR ++V
Sbjct: 67 MNGK-SVDGRQIRV 79
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 143 (55.4 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
KL+VG L F+ E L ++F +G + V + D ET + +GFGFV F ++ AK A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 439 LNGKLEIVGRTLKV 452
+NGK + GR ++V
Sbjct: 67 MNGK-SVDGRQIRV 79
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 143 (55.4 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
KL+VG L F+ E L ++F +G + V + D ET + +GFGFV F ++ AK A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 439 LNGKLEIVGRTLKV 452
+NGK + GR ++V
Sbjct: 67 MNGK-SVDGRQIRV 79
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 143 (55.4 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
KL+VG L F+ E L ++F +G + V + D ET + +GFGFV F ++ AK A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 439 LNGKLEIVGRTLKV 452
+NGK + GR ++V
Sbjct: 67 MNGK-SVDGRQIRV 79
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 143 (55.4 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
KL+VG L F+ E L ++F +G + V + D ET + +GFGFV F ++ AK A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 439 LNGKLEIVGRTLKV 452
+NGK + GR ++V
Sbjct: 67 MNGK-SVDGRQIRV 79
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 143 (55.4 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
KL+VG L F+ E L ++F +G + V + D ET + +GFGFV F ++ AK A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 439 LNGKLEIVGRTLKV 452
+NGK + GR ++V
Sbjct: 67 MNGK-SVDGRQIRV 79
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 143 (55.4 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
KL+VG L F+ E L ++F +G + V + D ET + +GFGFV F ++ AK A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 439 LNGKLEIVGRTLKV 452
+NGK + GR ++V
Sbjct: 67 MNGK-SVDGRQIRV 79
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 143 (55.4 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
KL+VG L F+ E L ++F +G + V + D ET + +GFGFV F ++ AK A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 439 LNGKLEIVGRTLKV 452
+NGK + GR ++V
Sbjct: 67 MNGK-SVDGRQIRV 79
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 143 (55.4 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 32/74 (43%), Positives = 45/74 (60%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
KL+VG L+F TE L ++F +G V V + D E+ + +GFGFV F E AK A A
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 439 LNGKLEIVGRTLKV 452
+NGK + GR ++V
Sbjct: 67 MNGK-SVDGRQIRV 79
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 143 (55.4 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
KL+VG L F+ E L ++F +G + V + D ET + +GFGFV F ++ AK A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 439 LNGKLEIVGRTLKV 452
+NGK + GR ++V
Sbjct: 67 MNGK-SVDGRQIRV 79
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 143 (55.4 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 30/81 (37%), Positives = 51/81 (62%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
KL++G L +++ E L+ F FG V V++ D +G+ +GFGFV FA+ A +A+ A
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDA 101
Query: 439 LNGKLEIVGRTLKVSSVTDHV 459
++GK ++GR L++S + V
Sbjct: 102 MDGK-GLLGRPLRISFALERV 121
>ZFIN|ZDB-GENE-030131-490 [details] [associations]
symbol:lemd3 "LEM domain containing 3" species:7955
"Danio rerio" [GO:0005639 "integral to nuclear inner membrane"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 InterPro:IPR018996 Pfam:PF09402
INTERPRO:IPR003887 ZFIN:ZDB-GENE-030131-490 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.720.40 InterPro:IPR011015
Pfam:PF03020 SUPFAM:SSF63451 PROSITE:PS50954 SMART:SM00540
GO:GO:0005639 GeneTree:ENSGT00530000063791 CTD:23592
HOGENOM:HOG000063699 HOVERGEN:HBG006319 OrthoDB:EOG4HQDHV
EMBL:BX119963 EMBL:BC168502 IPI:IPI00498035 RefSeq:NP_001038329.1
UniGene:Dr.106184 SMR:Q5TZH9 STRING:Q5TZH9
Ensembl:ENSDART00000013604 GeneID:558474 KEGG:dre:558474
InParanoid:Q5TZH9 OMA:TRYSSGE NextBio:20882487 Uniprot:Q5TZH9
Length = 841
Score = 168 (64.2 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 35/95 (36%), Positives = 56/95 (58%)
Query: 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFES 610
S + CL ++NMFDP ME ++ L IQ + E+CS + HI VDK S G VY++ S
Sbjct: 710 SLTPCLKIRNMFDPVMEVGENWHLAIQEAILEKCSDNDGIVHIAVDKNSREGCVYVKCLS 769
Query: 611 TEAAASAQRAMHMRWFARRLISAIFMKPEDYEAKF 645
E + A +A+H WF +L++ +++ + Y +F
Sbjct: 770 AEHSGKAFKALHGSWFDGKLVTVKYLRLDRYHQRF 804
>UNIPROTKB|F1PZA4 [details] [associations]
symbol:LEMD3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005639 "integral to nuclear inner membrane"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 InterPro:IPR018996 Pfam:PF09402 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005639 GeneTree:ENSGT00530000063791
EMBL:AAEX03007007 Ensembl:ENSCAFT00000036610 OMA:YGKPKLS
Uniprot:F1PZA4
Length = 708
Score = 167 (63.8 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 36/95 (37%), Positives = 55/95 (57%)
Query: 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFES 610
S + CL ++NMFDP ME + L IQ + E+CS + HI VDK S G VY++ S
Sbjct: 578 SLTPCLKIRNMFDPVMEIGDQWHLAIQEAILEKCSDNDGIVHIAVDKNSREGCVYVKCLS 637
Query: 611 TEAAASAQRAMHMRWFARRLISAIFMKPEDYEAKF 645
E A A +A+H WF +L++ +++ + Y +F
Sbjct: 638 PEYAGKAFKALHGSWFDGKLVTVKYLRLDRYHHRF 672
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 142 (55.0 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 32/79 (40%), Positives = 47/79 (59%)
Query: 375 AIDR-KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAK 433
A+D KL VG L F+ E L ++F +G + V + D ET + +GFGFV F ++ AK
Sbjct: 2 ALDEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 434 AAQSALNGKLEIVGRTLKV 452
A A+NGK + GR ++V
Sbjct: 62 DAMMAMNGK-SVDGRQIRV 79
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 142 (55.0 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 32/79 (40%), Positives = 47/79 (59%)
Query: 375 AIDR-KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAK 433
A+D KL VG L F+ E L ++F +G + V + D ET + +GFGFV F ++ AK
Sbjct: 2 ALDEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 434 AAQSALNGKLEIVGRTLKV 452
A A+NGK + GR ++V
Sbjct: 62 DAMMAMNGK-SVDGRQIRV 79
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 142 (55.0 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 32/79 (40%), Positives = 47/79 (59%)
Query: 375 AIDR-KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAK 433
A+D KL VG L F+ E L ++F +G + V + D ET + +GFGFV F ++ AK
Sbjct: 2 ALDEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 434 AAQSALNGKLEIVGRTLKV 452
A A+NGK + GR ++V
Sbjct: 62 DAMMAMNGK-SVDGRQIRV 79
>UNIPROTKB|K7ELT6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
Uniprot:K7ELT6
Length = 135
Score = 142 (55.0 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 32/78 (41%), Positives = 46/78 (58%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
KL+VG L F+ E L ++F +G + V + D ET + +GFGFV F ++ AK A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 439 LNGKLEIVGRTLKVSSVT 456
+NGK+ I R L S V+
Sbjct: 67 MNGKVRI--RVLSRSPVS 82
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 142 (55.0 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
KL+VG L F+ E L ++F +G + V + D ET + +GFGFV F ++ AK A A
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 439 LNGKLEIVGRTLKV 452
+NGK + GR ++V
Sbjct: 67 MNGK-SVDGRQIRV 79
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 142 (55.0 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
KL+VG L F+ E L ++F +G + V + D ET + +GFGFV F ++ AK A A
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 439 LNGKLEIVGRTLKV 452
+NGK + GR ++V
Sbjct: 67 MNGK-SVDGRQIRV 79
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 142 (55.0 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
KL+VG L F+ E L ++F +G + V + D ET + +GFGFV F ++ AK A A
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 439 LNGKLEIVGRTLKV 452
+NGK + GR ++V
Sbjct: 67 MNGK-SVDGRQIRV 79
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 130 (50.8 bits), Expect = 5.2e-09, Sum P(3) = 5.2e-09
Identities = 43/144 (29%), Positives = 69/144 (47%)
Query: 320 YRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDR 378
Y ++ F + AI ++G LL + V V ++ K + G A
Sbjct: 140 YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK---EREAELGARAKE-----FT 191
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
+Y+ N +M + +L++LF FGP V++ D E+G+ KGFGFV F + E A+ A
Sbjct: 192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 439 LNGKLEIVGRTLKVSSVTDHVGTQ 462
+NGK E+ G+ + V V Q
Sbjct: 251 MNGK-ELNGKQIYVGRAQKKVERQ 273
Score = 117 (46.2 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
LYV NL + + +LRK F PFG + ++ + E G+ KGFGFV F+ E A A + +
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 440 NGKL 443
NG++
Sbjct: 354 NGRI 357
Score = 108 (43.1 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
LYVG+LH ++TE L + F P GP+ +++ D+ T + G+ +V F Q A+ A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 440 NGKLEIVGRTLKV 452
N + I G+ +++
Sbjct: 73 NFDV-IKGKPVRI 84
Score = 85 (35.0 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 31/127 (24%), Positives = 55/127 (43%)
Query: 318 VSYRYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAI 376
+ Y Y+ F A+ ++ ++ G+PV + S+ + +L +S
Sbjct: 52 LGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG------------ 99
Query: 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 436
+++ NL ++ L F FG + ++ D E G KG+GFV F E A+ A
Sbjct: 100 --NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 437 SALNGKL 443
+NG L
Sbjct: 156 EKMNGML 162
Score = 67 (28.6 bits), Expect = 5.2e-09, Sum P(3) = 5.2e-09
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 210 VEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKG 263
+ P A P +++ + TE +YE FS AG + +R+ D +RRS G
Sbjct: 1 MNPSA-PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLG 53
Score = 55 (24.4 bits), Expect = 5.2e-09, Sum P(3) = 5.2e-09
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 581 VEEECSKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 636
+ +E S +G + K + RS GF ++ F S E A A M+ R A + L A+
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 637 KPEDYEA 643
+ E+ +A
Sbjct: 370 RKEERQA 376
Score = 50 (22.7 bits), Expect = 2.6e-07, Sum P(3) = 2.6e-07
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
+F + + +Y+ FS G + +++ D N SKG G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYG 141
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 130 (50.8 bits), Expect = 5.2e-09, Sum P(3) = 5.2e-09
Identities = 43/144 (29%), Positives = 69/144 (47%)
Query: 320 YRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDR 378
Y ++ F + AI ++G LL + V V ++ K + G A
Sbjct: 140 YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK---EREAELGARAKE-----FT 191
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
+Y+ N +M + +L++LF FGP V++ D E+G+ KGFGFV F + E A+ A
Sbjct: 192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 439 LNGKLEIVGRTLKVSSVTDHVGTQ 462
+NGK E+ G+ + V V Q
Sbjct: 251 MNGK-ELNGKQIYVGRAQKKVERQ 273
Score = 117 (46.2 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
LYV NL + + +LRK F PFG + ++ + E G+ KGFGFV F+ E A A + +
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 440 NGKL 443
NG++
Sbjct: 354 NGRI 357
Score = 108 (43.1 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
LYVG+LH ++TE L + F P GP+ +++ D+ T + G+ +V F Q A+ A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 440 NGKLEIVGRTLKV 452
N + I G+ +++
Sbjct: 73 NFDV-IKGKPVRI 84
Score = 85 (35.0 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 31/127 (24%), Positives = 55/127 (43%)
Query: 318 VSYRYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAI 376
+ Y Y+ F A+ ++ ++ G+PV + S+ + +L +S
Sbjct: 52 LGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG------------ 99
Query: 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 436
+++ NL ++ L F FG + ++ D E G KG+GFV F E A+ A
Sbjct: 100 --NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 437 SALNGKL 443
+NG L
Sbjct: 156 EKMNGML 162
Score = 67 (28.6 bits), Expect = 5.2e-09, Sum P(3) = 5.2e-09
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 210 VEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKG 263
+ P A P +++ + TE +YE FS AG + +R+ D +RRS G
Sbjct: 1 MNPSA-PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLG 53
Score = 55 (24.4 bits), Expect = 5.2e-09, Sum P(3) = 5.2e-09
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 581 VEEECSKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 636
+ +E S +G + K + RS GF ++ F S E A A M+ R A + L A+
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 637 KPEDYEA 643
+ E+ +A
Sbjct: 370 RKEERQA 376
Score = 50 (22.7 bits), Expect = 2.6e-07, Sum P(3) = 2.6e-07
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
+F + + +Y+ FS G + +++ D N SKG G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYG 141
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 141 (54.7 bits), Expect = 6.0e-09, P = 6.0e-09
Identities = 37/105 (35%), Positives = 57/105 (54%)
Query: 358 LVQSNTSAGGTA--TGPYGAI---DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLD 412
L++ N S+ G T G++ KL++G L + + LR F FG V ++ +D
Sbjct: 10 LLRQNISSNGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVD 69
Query: 413 IETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 457
ETG+ +GFGFV F A AA S ++GK E+ GR ++V+ D
Sbjct: 70 RETGRSRGFGFVNFNDEGAATAAISEMDGK-ELNGRHIRVNPAND 113
>UNIPROTKB|Q9Y2U8 [details] [associations]
symbol:LEMD3 "Inner nuclear membrane protein Man1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005639 "integral to nuclear inner membrane"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0035914
"skeletal muscle cell differentiation" evidence=IEA] [GO:0051726
"regulation of cell cycle" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0030512 "negative regulation of
transforming growth factor beta receptor signaling pathway"
evidence=IDA] [GO:0032926 "negative regulation of activin receptor
signaling pathway" evidence=IDA] [GO:0030514 "negative regulation
of BMP signaling pathway" evidence=IDA] [GO:0005637 "nuclear inner
membrane" evidence=IDA] [GO:0016020 "membrane" evidence=TAS]
[GO:0016021 "integral to membrane" evidence=IDA] InterPro:IPR012677
InterPro:IPR018996 Pfam:PF09402 INTERPRO:IPR003887 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0051726 GO:GO:0032926
Gene3D:1.10.720.40 InterPro:IPR011015 Pfam:PF03020 SUPFAM:SSF63451
PROSITE:PS50954 GO:GO:0035914 GO:GO:0030512 GO:GO:0030514
SMART:SM00540 GO:GO:0005639 Orphanet:94063 EMBL:AF112299
EMBL:AF263918 EMBL:AF180135 EMBL:AF180136 EMBL:AF180137
EMBL:AF180138 EMBL:AF180139 EMBL:AF180140 EMBL:AF180141
EMBL:AF180142 EMBL:AL137533 IPI:IPI00032491 PIR:T46377
RefSeq:NP_001161086.1 RefSeq:NP_055134.2 UniGene:Hs.741370 PDB:2CH0
PDBsum:2CH0 ProteinModelPortal:Q9Y2U8 SMR:Q9Y2U8 IntAct:Q9Y2U8
MINT:MINT-1199446 STRING:Q9Y2U8 PhosphoSite:Q9Y2U8 DMDM:13629600
PaxDb:Q9Y2U8 PeptideAtlas:Q9Y2U8 PRIDE:Q9Y2U8 DNASU:23592
Ensembl:ENST00000308330 GeneID:23592 KEGG:hsa:23592 UCSC:uc001ssl.2
CTD:23592 GeneCards:GC12P065563 HGNC:HGNC:28887 HPA:HPA025078
MIM:155950 MIM:166700 MIM:607844 neXtProt:NX_Q9Y2U8 Orphanet:1306
Orphanet:166119 Orphanet:1879 PharmGKB:PA134907442 eggNOG:NOG70255
HOGENOM:HOG000063699 HOVERGEN:HBG006319 InParanoid:Q9Y2U8
OMA:SPIPRYR OrthoDB:EOG4HQDHV PhylomeDB:Q9Y2U8
EvolutionaryTrace:Q9Y2U8 GenomeRNAi:23592 NextBio:46240
ArrayExpress:Q9Y2U8 Bgee:Q9Y2U8 CleanEx:HS_LEMD3
Genevestigator:Q9Y2U8 GermOnline:ENSG00000174106 Uniprot:Q9Y2U8
Length = 911
Score = 167 (63.8 bits), Expect = 6.2e-09, P = 6.2e-09
Identities = 36/95 (37%), Positives = 55/95 (57%)
Query: 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFES 610
S + CL ++NMFDP ME + L IQ + E+CS + HI VDK S G VY++ S
Sbjct: 781 SLTPCLKIRNMFDPVMEIGDQWHLAIQEAILEKCSDNDGIVHIAVDKNSREGCVYVKCLS 840
Query: 611 TEAAASAQRAMHMRWFARRLISAIFMKPEDYEAKF 645
E A A +A+H WF +L++ +++ + Y +F
Sbjct: 841 PEYAGKAFKALHGSWFDGKLVTVKYLRLDRYHHRF 875
>UNIPROTKB|E1BIJ4 [details] [associations]
symbol:LEMD3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051726 "regulation of cell cycle" evidence=IEA]
[GO:0035914 "skeletal muscle cell differentiation" evidence=IEA]
[GO:0032926 "negative regulation of activin receptor signaling
pathway" evidence=IEA] [GO:0030514 "negative regulation of BMP
signaling pathway" evidence=IEA] [GO:0030512 "negative regulation
of transforming growth factor beta receptor signaling pathway"
evidence=IEA] [GO:0005639 "integral to nuclear inner membrane"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 InterPro:IPR018996 Pfam:PF09402
INTERPRO:IPR003887 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0051726
GO:GO:0032926 Gene3D:1.10.720.40 InterPro:IPR011015 Pfam:PF03020
SUPFAM:SSF63451 PROSITE:PS50954 GO:GO:0035914 GO:GO:0030512
GO:GO:0030514 SMART:SM00540 GO:GO:0005639
GeneTree:ENSGT00530000063791 OMA:SPIPRYR EMBL:DAAA02013330
EMBL:DAAA02013331 IPI:IPI00702391 Ensembl:ENSBTAT00000053178
Uniprot:E1BIJ4
Length = 913
Score = 167 (63.8 bits), Expect = 6.2e-09, P = 6.2e-09
Identities = 36/95 (37%), Positives = 55/95 (57%)
Query: 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFES 610
S + CL ++NMFDP ME + L IQ + E+CS + HI VDK S G VY++ S
Sbjct: 783 SLTPCLKIRNMFDPVMEIGDQWHLAIQEAILEKCSDNDGIVHIAVDKNSREGCVYVKCLS 842
Query: 611 TEAAASAQRAMHMRWFARRLISAIFMKPEDYEAKF 645
E A A +A+H WF +L++ +++ + Y +F
Sbjct: 843 PEYAGKAFKALHGSWFDGKLVTVKYLRLDRYHHRF 877
>UNIPROTKB|F1NEC5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00586587
Ensembl:ENSGALT00000037991 Uniprot:F1NEC5
Length = 945
Score = 135 (52.6 bits), Expect = 6.9e-09, Sum P(2) = 6.9e-09
Identities = 49/158 (31%), Positives = 77/158 (48%)
Query: 312 DPATVLVS--YRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSE-AEKNLVQSNTSAGG 367
D A L+S + ++E+ S A+ L G ++ G + VK SE A + V+S+
Sbjct: 753 DKAGTLLSMGFGFVEYKKPESAQKALRRLQGCIVDGHKLEVKISERAVRPAVKSSRKKQT 812
Query: 368 TATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIE-TGQCKGFGFVQF 426
K+ V N+ F T ++R+LF FG ++ V+LP + TG +GFGFV F
Sbjct: 813 VKKQKTS----KILVRNIPFQATVREIRELFSTFGELKTVRLPKKMAGTGSHRGFGFVDF 868
Query: 427 AQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQDT 464
+ AK A +AL + GR L V + T++T
Sbjct: 869 LTKQDAKKAFNALCHSTHLYGRRL----VLEWADTEET 902
Score = 126 (49.4 bits), Expect = 1.9e-06, Sum P(3) = 1.9e-06
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
+L+V NL F TE L K+F +GP+ + P+D T + KGF F+ + EHA A +
Sbjct: 403 RLFVRNLPFTSTEEDLEKIFSKYGPLSEIHFPIDRLTKKPKGFAFITYMIPEHAVKAYAE 462
Query: 439 LNGKLEIVGRTL 450
++G++ GR +
Sbjct: 463 MDGQV-FQGRMM 473
Score = 80 (33.2 bits), Expect = 6.9e-09, Sum P(2) = 6.9e-09
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 203 YKEKKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSK 262
++ K E E D R +F +P +TE D+ + FSK G + ++ +DR +++ K
Sbjct: 385 WQRMKRDDEEEEDLSESGR-LFVRNLPFTSTEEDLEKIFSKYGPLSEIHFPIDRLTKKPK 443
Query: 263 G 263
G
Sbjct: 444 G 444
Score = 55 (24.4 bits), Expect = 1.9e-06, Sum P(3) = 1.9e-06
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 204 KEKKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSR-RSK 262
K+K +V EA TV PL TE+ + EFFS ++ + + M +N++ +S
Sbjct: 281 KQKNQVSSAEASTPH---TVKLRGAPLNVTEQKIREFFSP---LKPLAIRMGKNTQGKST 334
Query: 263 G 263
G
Sbjct: 335 G 335
Score = 52 (23.4 bits), Expect = 1.9e-06, Sum P(3) = 1.9e-06
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 578 QGDVEEECSKYGRVKHIYVDKR--------SAGFVYLRFESTEAAASAQRAM 621
+G ++E SK G VK + K+ S GF ++ ++ E+A A R +
Sbjct: 730 EGTLKETFSKVGAVKSCTISKKKDKAGTLLSMGFGFVEYKKPESAQKALRRL 781
Score = 50 (22.7 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 205 EKKEVVEPEADPERDQR------TVFAYQMPLKATERDVYEFFSKAGKVR 248
E+ + E D E D+ T+F + TE + E FSK G V+
Sbjct: 695 EETSAQDEEEDEEEDEEESIPGCTLFIKNLNFTTTEGTLKETFSKVGAVK 744
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 128 (50.1 bits), Expect = 7.0e-09, Sum P(3) = 7.0e-09
Identities = 43/144 (29%), Positives = 68/144 (47%)
Query: 320 YRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDR 378
Y ++ F + AI ++G LL + V V ++ K + G A
Sbjct: 108 YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK---EREAELGARAKE-----FT 159
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
+Y+ N +M + +L+ LF FGP V++ D E+G+ KGFGFV F + E A+ A
Sbjct: 160 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDE 218
Query: 439 LNGKLEIVGRTLKVSSVTDHVGTQ 462
+NGK E+ G+ + V V Q
Sbjct: 219 MNGK-ELNGKQIYVGRAQKKVERQ 241
Score = 117 (46.2 bits), Expect = 4.6e-07, Sum P(3) = 4.6e-07
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
LYV NL + + +LRK F PFG + ++ + E G+ KGFGFV F+ E A A + +
Sbjct: 264 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 321
Query: 440 NGKL 443
NG++
Sbjct: 322 NGRI 325
Score = 108 (43.1 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
LYVG+LH ++TE L + F P GP+ +++ D+ T + G+ +V F Q A+ A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 440 NGKLEIVGRTLKV 452
N + I G+ +++
Sbjct: 73 NFDV-IKGKPVRI 84
Score = 67 (28.6 bits), Expect = 7.0e-09, Sum P(3) = 7.0e-09
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 210 VEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKG 263
+ P A P +++ + TE +YE FS AG + +R+ D +RRS G
Sbjct: 1 MNPSA-PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLG 53
Score = 55 (24.4 bits), Expect = 7.0e-09, Sum P(3) = 7.0e-09
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 581 VEEECSKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 636
+ +E S +G + K + RS GF ++ F S E A A M+ R A + L A+
Sbjct: 278 LRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 337
Query: 637 KPEDYEA 643
+ E+ +A
Sbjct: 338 RKEERQA 344
Score = 49 (22.3 bits), Expect = 4.6e-07, Sum P(3) = 4.6e-07
Identities = 12/60 (20%), Positives = 27/60 (45%)
Query: 318 VSYRYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAI 376
+ Y Y+ F A+ ++ ++ G+PV + S+ + +L +S + YG +
Sbjct: 52 LGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVVCDENGSKGYGFV 111
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 139 (54.0 bits), Expect = 7.1e-09, Sum P(2) = 7.1e-09
Identities = 42/129 (32%), Positives = 65/129 (50%)
Query: 339 GQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYG-AIDRK---LYVGNLHFNMTETQL 394
G + G+ + V S + SN +AG A YG + + L+VGNL F+ E +
Sbjct: 302 GAFIDGREIKVDFSTGKAT--NSNDAAGARAK-KYGDTVSPESDTLFVGNLPFDADEDSV 358
Query: 395 RKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 454
F V+ ++LP + E+G+ KGFG+V F +E AK+A LNG+ I GR ++
Sbjct: 359 GAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSAFEQLNGQ-SINGRNCRLDY 417
Query: 455 VTDHVGTQD 463
T +D
Sbjct: 418 STPRPPRED 426
Score = 125 (49.1 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 32/87 (36%), Positives = 46/87 (52%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
L+VGNL +N+ + L + F+ G V ++ D E+G+ KGFG+V FA E A+ A
Sbjct: 241 LFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEKAHGEK 300
Query: 440 NGKLEIVGRTLKVSSVTDHVGTQDTAA 466
G I GR +KV T + AA
Sbjct: 301 QGAF-IDGREIKVDFSTGKATNSNDAA 326
Score = 68 (29.0 bits), Expect = 7.1e-09, Sum P(2) = 7.1e-09
Identities = 19/64 (29%), Positives = 29/64 (45%)
Query: 204 KEKKEVVEPEADPERDQR--TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRS 261
+E++E + E + T+F + + + E F G V R+I DR S RS
Sbjct: 220 EEEEEAPAKKTKTEESDKPSTLFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRS 279
Query: 262 KGVG 265
KG G
Sbjct: 280 KGFG 283
Score = 43 (20.2 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 599 RSAGFVYLRFESTEAAASA 617
R GF Y+ F S E A SA
Sbjct: 381 RRKGFGYVTFNSVEDAKSA 399
>ZFIN|ZDB-GENE-030131-185 [details] [associations]
symbol:hnrnpab "heterogeneous nuclear
ribonucleoprotein A/B" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-185
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU658205 IPI:IPI01023938 Ensembl:ENSDART00000148447
ArrayExpress:F8W4E3 Uniprot:F8W4E3
Length = 366
Score = 119 (46.9 bits), Expect = 8.5e-09, Sum P(2) = 8.5e-09
Identities = 28/90 (31%), Positives = 48/90 (53%)
Query: 350 KPSEAEKNLVQSNTSAGGTATGPYGAID------RKLYVGNLHFNMTETQLRKLFEPFGP 403
+PS +K L Q G P A+ +K++VG L+ TE ++R+ F FG
Sbjct: 145 EPSGVDKVLAQKEHRLDGRQIDPKKAMAMKKEPVKKIFVGGLNPETTEERIREYFGAFGE 204
Query: 404 VELVQLPLDIETGQCKGFGFVQFAQLEHAK 433
+E ++LP+D ++ + +GF F+ F + E K
Sbjct: 205 IETIELPMDPKSNKRRGFVFITFKEEEAVK 234
Score = 85 (35.0 bits), Expect = 8.5e-09, Sum P(2) = 8.5e-09
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDG 274
E D +F + +++D+ ++FSK G+V D + MD N+ RS+G G + G
Sbjct: 91 EEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSG 148
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 128 (50.1 bits), Expect = 8.6e-09, Sum P(3) = 8.6e-09
Identities = 43/144 (29%), Positives = 68/144 (47%)
Query: 320 YRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDR 378
Y ++ F + AI ++G LL + V V ++ K + G A
Sbjct: 140 YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK---EREAELGARAKE-----FT 191
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
+Y+ N +M + +L+ LF FGP V++ D E+G+ KGFGFV F + E A+ A
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 439 LNGKLEIVGRTLKVSSVTDHVGTQ 462
+NGK E+ G+ + V V Q
Sbjct: 251 MNGK-ELNGKQIYVGRAQKKVERQ 273
Score = 117 (46.2 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
LYV NL + + +LRK F PFG + ++ + E G+ KGFGFV F+ E A A + +
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 440 NGKL 443
NG++
Sbjct: 354 NGRI 357
Score = 108 (43.1 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
LYVG+LH ++TE L + F P GP+ +++ D+ T + G+ +V F Q A+ A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 440 NGKLEIVGRTLKV 452
N + I G+ +++
Sbjct: 73 NFDV-IKGKPVRI 84
Score = 85 (35.0 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 31/127 (24%), Positives = 55/127 (43%)
Query: 318 VSYRYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAI 376
+ Y Y+ F A+ ++ ++ G+PV + S+ + +L +S
Sbjct: 52 LGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG------------ 99
Query: 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 436
+++ NL ++ L F FG + ++ D E G KG+GFV F E A+ A
Sbjct: 100 --NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 437 SALNGKL 443
+NG L
Sbjct: 156 EKMNGML 162
Score = 67 (28.6 bits), Expect = 8.6e-09, Sum P(3) = 8.6e-09
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 210 VEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKG 263
+ P A P +++ + TE +YE FS AG + +R+ D +RRS G
Sbjct: 1 MNPSA-PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLG 53
Score = 55 (24.4 bits), Expect = 8.6e-09, Sum P(3) = 8.6e-09
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 581 VEEECSKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 636
+ +E S +G + K + RS GF ++ F S E A A M+ R A + L A+
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 637 KPEDYEA 643
+ E+ +A
Sbjct: 370 RKEERQA 376
Score = 50 (22.7 bits), Expect = 4.3e-07, Sum P(3) = 4.3e-07
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
+F + + +Y+ FS G + +++ D N SKG G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYG 141
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 128 (50.1 bits), Expect = 8.6e-09, Sum P(3) = 8.6e-09
Identities = 43/144 (29%), Positives = 68/144 (47%)
Query: 320 YRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDR 378
Y ++ F + AI ++G LL + V V ++ K + G A
Sbjct: 140 YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK---EREAELGARAKE-----FT 191
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
+Y+ N +M + +L+ LF FGP V++ D E+G+ KGFGFV F + E A+ A
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 439 LNGKLEIVGRTLKVSSVTDHVGTQ 462
+NGK E+ G+ + V V Q
Sbjct: 251 MNGK-ELNGKQIYVGRAQKKVERQ 273
Score = 117 (46.2 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
LYV NL + + +LRK F PFG + ++ + E G+ KGFGFV F+ E A A + +
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 440 NGKL 443
NG++
Sbjct: 354 NGRI 357
Score = 108 (43.1 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
LYVG+LH ++TE L + F P GP+ +++ D+ T + G+ +V F Q A+ A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 440 NGKLEIVGRTLKV 452
N + I G+ +++
Sbjct: 73 NFDV-IKGKPVRI 84
Score = 85 (35.0 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 31/127 (24%), Positives = 55/127 (43%)
Query: 318 VSYRYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAI 376
+ Y Y+ F A+ ++ ++ G+PV + S+ + +L +S
Sbjct: 52 LGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG------------ 99
Query: 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 436
+++ NL ++ L F FG + ++ D E G KG+GFV F E A+ A
Sbjct: 100 --NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 437 SALNGKL 443
+NG L
Sbjct: 156 EKMNGML 162
Score = 67 (28.6 bits), Expect = 8.6e-09, Sum P(3) = 8.6e-09
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 210 VEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKG 263
+ P A P +++ + TE +YE FS AG + +R+ D +RRS G
Sbjct: 1 MNPSA-PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLG 53
Score = 55 (24.4 bits), Expect = 8.6e-09, Sum P(3) = 8.6e-09
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 581 VEEECSKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 636
+ +E S +G + K + RS GF ++ F S E A A M+ R A + L A+
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 637 KPEDYEA 643
+ E+ +A
Sbjct: 370 RKEERQA 376
Score = 50 (22.7 bits), Expect = 4.3e-07, Sum P(3) = 4.3e-07
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
+F + + +Y+ FS G + +++ D N SKG G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYG 141
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 128 (50.1 bits), Expect = 8.6e-09, Sum P(3) = 8.6e-09
Identities = 43/144 (29%), Positives = 68/144 (47%)
Query: 320 YRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDR 378
Y ++ F + AI ++G LL + V V ++ K + G A
Sbjct: 140 YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK---EREAELGARAKE-----FT 191
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
+Y+ N +M + +L+ LF FGP V++ D E+G+ KGFGFV F + E A+ A
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 439 LNGKLEIVGRTLKVSSVTDHVGTQ 462
+NGK E+ G+ + V V Q
Sbjct: 251 MNGK-ELNGKQIYVGRAQKKVERQ 273
Score = 117 (46.2 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
LYV NL + + +LRK F PFG + ++ + E G+ KGFGFV F+ E A A + +
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 440 NGKL 443
NG++
Sbjct: 354 NGRI 357
Score = 108 (43.1 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
LYVG+LH ++TE L + F P GP+ +++ D+ T + G+ +V F Q A+ A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 440 NGKLEIVGRTLKV 452
N + I G+ +++
Sbjct: 73 NFDV-IKGKPVRI 84
Score = 85 (35.0 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 31/127 (24%), Positives = 55/127 (43%)
Query: 318 VSYRYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAI 376
+ Y Y+ F A+ ++ ++ G+PV + S+ + +L +S
Sbjct: 52 LGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG------------ 99
Query: 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 436
+++ NL ++ L F FG + ++ D E G KG+GFV F E A+ A
Sbjct: 100 --NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 437 SALNGKL 443
+NG L
Sbjct: 156 EKMNGML 162
Score = 67 (28.6 bits), Expect = 8.6e-09, Sum P(3) = 8.6e-09
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 210 VEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKG 263
+ P A P +++ + TE +YE FS AG + +R+ D +RRS G
Sbjct: 1 MNPSA-PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLG 53
Score = 55 (24.4 bits), Expect = 8.6e-09, Sum P(3) = 8.6e-09
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 581 VEEECSKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 636
+ +E S +G + K + RS GF ++ F S E A A M+ R A + L A+
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 637 KPEDYEA 643
+ E+ +A
Sbjct: 370 RKEERQA 376
Score = 50 (22.7 bits), Expect = 4.3e-07, Sum P(3) = 4.3e-07
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
+F + + +Y+ FS G + +++ D N SKG G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYG 141
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 128 (50.1 bits), Expect = 8.6e-09, Sum P(3) = 8.6e-09
Identities = 43/144 (29%), Positives = 68/144 (47%)
Query: 320 YRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDR 378
Y ++ F + AI ++G LL + V V ++ K + G A
Sbjct: 140 YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK---EREAELGARAKE-----FT 191
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
+Y+ N +M + +L+ LF FGP V++ D E+G+ KGFGFV F + E A+ A
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 439 LNGKLEIVGRTLKVSSVTDHVGTQ 462
+NGK E+ G+ + V V Q
Sbjct: 251 MNGK-ELNGKQIYVGRAQKKVERQ 273
Score = 117 (46.2 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
LYV NL + + +LRK F PFG + ++ + E G+ KGFGFV F+ E A A + +
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 440 NGKL 443
NG++
Sbjct: 354 NGRI 357
Score = 108 (43.1 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
LYVG+LH ++TE L + F P GP+ +++ D+ T + G+ +V F Q A+ A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 440 NGKLEIVGRTLKV 452
N + I G+ +++
Sbjct: 73 NFDV-IKGKPVRI 84
Score = 85 (35.0 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 31/127 (24%), Positives = 55/127 (43%)
Query: 318 VSYRYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAI 376
+ Y Y+ F A+ ++ ++ G+PV + S+ + +L +S
Sbjct: 52 LGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG------------ 99
Query: 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 436
+++ NL ++ L F FG + ++ D E G KG+GFV F E A+ A
Sbjct: 100 --NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 437 SALNGKL 443
+NG L
Sbjct: 156 EKMNGML 162
Score = 67 (28.6 bits), Expect = 8.6e-09, Sum P(3) = 8.6e-09
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 210 VEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKG 263
+ P A P +++ + TE +YE FS AG + +R+ D +RRS G
Sbjct: 1 MNPSA-PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLG 53
Score = 55 (24.4 bits), Expect = 8.6e-09, Sum P(3) = 8.6e-09
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 581 VEEECSKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 636
+ +E S +G + K + RS GF ++ F S E A A M+ R A + L A+
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 637 KPEDYEA 643
+ E+ +A
Sbjct: 370 RKEERQA 376
Score = 50 (22.7 bits), Expect = 4.3e-07, Sum P(3) = 4.3e-07
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
+F + + +Y+ FS G + +++ D N SKG G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYG 141
>UNIPROTKB|F1NIB2 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 OMA:FILFKDP EMBL:AADN02028501
EMBL:AADN02028502 EMBL:AADN02028503 IPI:IPI00574172
Ensembl:ENSGALT00000023234 ArrayExpress:F1NIB2 Uniprot:F1NIB2
Length = 263
Score = 120 (47.3 bits), Expect = 8.8e-09, Sum P(2) = 8.8e-09
Identities = 29/90 (32%), Positives = 48/90 (53%)
Query: 350 KPSEAEKNLVQSNTSAGGTATGPYGAI----D--RKLYVGNLHFNMTETQLRKLFEPFGP 403
+P EK L Q G P A+ D +K++VG L+ TE ++R+ F FG
Sbjct: 50 EPGSVEKVLEQKEHRLDGRLIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGE 109
Query: 404 VELVQLPLDIETGQCKGFGFVQFAQLEHAK 433
+E ++LP+D +T + +GF F+ F + + K
Sbjct: 110 IEAIELPMDPKTNKRRGFVFITFKEEDPVK 139
Score = 78 (32.5 bits), Expect = 8.8e-09, Sum P(2) = 8.8e-09
Identities = 15/43 (34%), Positives = 30/43 (69%)
Query: 233 TERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGN 275
+++D+ ++F+K G+V D + MD N+ RS+G G I+ ++ G+
Sbjct: 12 SKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFG-FILFKEPGS 53
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 128 (50.1 bits), Expect = 9.2e-09, Sum P(3) = 9.2e-09
Identities = 43/144 (29%), Positives = 68/144 (47%)
Query: 320 YRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDR 378
Y ++ F + AI ++G LL + V V ++ K + G A
Sbjct: 140 YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK---EREAELGARAKE-----FT 191
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
+Y+ N +M + +L+ LF FGP V++ D E+G+ KGFGFV F + E A+ A
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 439 LNGKLEIVGRTLKVSSVTDHVGTQ 462
+NGK E+ G+ + V V Q
Sbjct: 251 MNGK-ELNGKQIYVGRAQKKVERQ 273
Score = 117 (46.2 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
LYV NL + + +LRK F PFG + ++ + E G+ KGFGFV F+ E A A + +
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 440 NGKL 443
NG++
Sbjct: 354 NGRI 357
Score = 108 (43.1 bits), Expect = 0.00084, Sum P(2) = 0.00084
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
LYVG+LH ++TE L + F P GP+ +++ D+ T + G+ +V F Q A+ A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 440 NGKLEIVGRTLKV 452
N + I G+ +++
Sbjct: 73 NFDV-IKGKPVRI 84
Score = 85 (35.0 bits), Expect = 0.00043, Sum P(3) = 0.00043
Identities = 31/127 (24%), Positives = 55/127 (43%)
Query: 318 VSYRYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAI 376
+ Y Y+ F A+ ++ ++ G+PV + S+ + +L +S
Sbjct: 52 LGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG------------ 99
Query: 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 436
+++ NL ++ L F FG + ++ D E G KG+GFV F E A+ A
Sbjct: 100 --NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 437 SALNGKL 443
+NG L
Sbjct: 156 EKMNGML 162
Score = 67 (28.6 bits), Expect = 9.2e-09, Sum P(3) = 9.2e-09
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 210 VEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKG 263
+ P A P +++ + TE +YE FS AG + +R+ D +RRS G
Sbjct: 1 MNPSA-PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLG 53
Score = 55 (24.4 bits), Expect = 9.2e-09, Sum P(3) = 9.2e-09
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 581 VEEECSKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 636
+ +E S +G + K + RS GF ++ F S E A A M+ R A + L A+
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 637 KPEDYEA 643
+ E+ +A
Sbjct: 370 RKEERQA 376
Score = 50 (22.7 bits), Expect = 4.6e-07, Sum P(3) = 4.6e-07
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
+F + + +Y+ FS G + +++ D N SKG G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYG 141
>ASPGD|ASPL0000038712 [details] [associations]
symbol:AN3427 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0030684 "preribosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306 GO:GO:0003676
eggNOG:COG0724 HOGENOM:HOG000193653 OMA:KNPPSRI OrthoDB:EOG47DDRF
EMBL:AACD01000056 RefSeq:XP_661031.1 ProteinModelPortal:Q5B7Q3
STRING:Q5B7Q3 EnsemblFungi:CADANIAT00009611 GeneID:2874554
KEGG:ani:AN3427.2 Uniprot:Q5B7Q3
Length = 357
Score = 159 (61.0 bits), Expect = 9.5e-09, P = 9.5e-09
Identities = 37/118 (31%), Positives = 65/118 (55%)
Query: 320 YRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAI-DR 378
+ Y++F ++ A+ LS QL+ G+ V++K ++ K + + G A G +
Sbjct: 121 FAYVDFSTPKALEEALGLSEQLVSGRRVLIKDAKNYKGRPEKSQDDGNNAPTSSGRPPSK 180
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 436
+L+VGNL F+ T+ L + F G V V + ++G+CKG+ +V+F LE AK A+
Sbjct: 181 RLFVGNLSFDTTKEFLEEHFSQCGTVTNVHVATFQDSGKCKGYAWVEFEDLEAAKTAE 238
>UNIPROTKB|K7GQZ8 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
Length = 88
Score = 139 (54.0 bits), Expect = 9.9e-09, P = 9.9e-09
Identities = 30/81 (37%), Positives = 45/81 (55%)
Query: 383 GNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK 442
GN+ + TE QL+ +F GPV +L D ETG+ KG+GF ++ E A +A LNG+
Sbjct: 2 GNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR 61
Query: 443 LEIVGRTLKVSSVTDHVGTQD 463
E GR L+V + ++
Sbjct: 62 -EFSGRALRVDNAASEKNKEE 81
>UNIPROTKB|E9PID8 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 Pfam:PF14327 EMBL:Z83819 EMBL:Z95327
HGNC:HGNC:2484 IPI:IPI01012987 ProteinModelPortal:E9PID8 SMR:E9PID8
Ensembl:ENST00000475126 ArrayExpress:E9PID8 Bgee:E9PID8
Uniprot:E9PID8
Length = 438
Score = 160 (61.4 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 39/102 (38%), Positives = 56/102 (54%)
Query: 365 AGGTATGPYGAIDRKL---YVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGF 421
AG T P A+DR L +VGN+ + TE QL+ +F GPV +L D ETG+ KG+
Sbjct: 2 AGLTVRDP--AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGY 59
Query: 422 GFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQD 463
GF ++ E A +A LNG+ E GR L+V + ++
Sbjct: 60 GFCEYQDQETALSAMRNLNGR-EFSGRALRVDNAASEKNKEE 100
>UNIPROTKB|G3V2B4 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780 EMBL:AL135998
HGNC:HGNC:20155 ChiTaRS:RBM23 ProteinModelPortal:G3V2B4 SMR:G3V2B4
Ensembl:ENST00000555722 ArrayExpress:G3V2B4 Bgee:G3V2B4
Uniprot:G3V2B4
Length = 51
Score = 120 (47.3 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 23/38 (60%), Positives = 29/38 (76%)
Query: 227 QMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 264
Q+ + RD+ +FFS GKVRDVR+I DRNSRRSKG+
Sbjct: 2 QLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGI 39
Score = 39 (18.8 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 322 YIEFYDVMSVP 332
Y+EF ++ SVP
Sbjct: 41 YVEFCEIQSVP 51
>UNIPROTKB|E2R228 [details] [associations]
symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
Length = 149
Score = 138 (53.6 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 32/81 (39%), Positives = 44/81 (54%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
L++G L+FN E L F FGP+ V + D ET + +GF F+ F EHA A +
Sbjct: 8 LFLGGLNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHASDAMRPM 67
Query: 440 NGKLEIVGRTLKVSSVTDHVG 460
NGK + GR ++V DH G
Sbjct: 68 NGK-SLDGRQIRV----DHAG 83
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 138 (53.6 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 29/74 (39%), Positives = 45/74 (60%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
KL++G L+F+ E L ++F +G + V + D ET + +GFGFV F + AK A A
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65
Query: 439 LNGKLEIVGRTLKV 452
+NGK + GR ++V
Sbjct: 66 MNGKA-VDGRQIRV 78
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 150 (57.9 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 42/124 (33%), Positives = 63/124 (50%)
Query: 320 YRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDR 378
Y Y++F + AI + G+ + G+P+ S ++ +N A P D
Sbjct: 211 YGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKP--AGNNDRAKKFGDTPSEPSDT 268
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
L++GNL FN + +LF G V V++P ET Q KGFG+VQF+ +E AK A A
Sbjct: 269 -LFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDA 327
Query: 439 LNGK 442
L G+
Sbjct: 328 LQGE 331
Score = 51 (23.0 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 206 KKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
KK+ E +P T+F ++ + + + F G V R+I +R + RS+G G
Sbjct: 157 KKQKNEETEEPA----TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYG 212
>ZFIN|ZDB-GENE-000501-2 [details] [associations]
symbol:celf3a "cugbp, Elav-like family member 3a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000501-2 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
EMBL:AB032725 EMBL:BX248499 EMBL:BC060923 IPI:IPI00504951
RefSeq:NP_571569.2 UniGene:Dr.8323 ProteinModelPortal:Q9IBD1
SMR:Q9IBD1 Ensembl:ENSDART00000039629 GeneID:57922 KEGG:dre:57922
CTD:57922 OMA:MQHYTAT OrthoDB:EOG4RJG30 NextBio:20891938
Bgee:Q9IBD1 Uniprot:Q9IBD1
Length = 452
Score = 131 (51.2 bits), Expect = 1.4e-08, Sum P(4) = 1.4e-08
Identities = 46/157 (29%), Positives = 74/157 (47%)
Query: 374 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAK 433
G DRKL+VG L +++ +RK+FEPFG +E + L G KG FV++ A+
Sbjct: 90 GRGDRKLFVGMLGKQLSDADVRKMFEPFGSIEECTV-LRGPDGASKGCAFVKYQSNAEAQ 148
Query: 434 AAQSALNGKLEIVGRT----LKVSSVTDHVGT---QDTAAKSAXXXXXXXXXLALNAQSR 486
AA SAL+G + G + +K + G Q A++ A NA ++
Sbjct: 149 AAISALHGSRTLPGASSSLVVKFADTEKERGIRRMQQVASQLGVISPMSLHLGAYNAYTQ 208
Query: 487 ALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAIS 523
AL+ Q+ +A S ++P +AV Q ++
Sbjct: 209 ALVQQQ-------ALVAQSAYLSPVATVAAVQMQQLA 238
Score = 124 (48.7 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 43/142 (30%), Positives = 68/142 (47%)
Query: 311 LDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTAT 370
LDP + +Y ++ Y + P A L GQ QP +V + +Q
Sbjct: 313 LDP--LQQAYTGMQHYTA-TYPAAYGLVGQPFPHQPTLVAQQPQQPQQLQQRE------- 362
Query: 371 GPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLE 430
GP G +++ +L T++++ ++F PFG V ++ +D T Q K FGFV F
Sbjct: 363 GPEGC---NIFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPA 419
Query: 431 HAKAAQSALNGKLEIVGRTLKV 452
A+AA A+NG +I + LKV
Sbjct: 420 SAQAAIQAMNG-FQIGMKRLKV 440
Score = 65 (27.9 bits), Expect = 1.4e-08, Sum P(4) = 1.4e-08
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKG 263
E D +F Q+P E+D+ F + GK+ ++ +I D+ + KG
Sbjct: 3 EADAIKLFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKG 49
Score = 41 (19.5 bits), Expect = 1.4e-08, Sum P(4) = 1.4e-08
Identities = 11/50 (22%), Positives = 27/50 (54%)
Query: 594 IYVDK---RSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPED 640
++VD+ +S F ++ F++ +A +A +AM+ + + +P+D
Sbjct: 398 VFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 447
Score = 38 (18.4 bits), Expect = 1.4e-08, Sum P(4) = 1.4e-08
Identities = 5/13 (38%), Positives = 11/13 (84%)
Query: 343 LGQPVMVKPSEAE 355
+ +P+ VKP+++E
Sbjct: 77 MNRPIQVKPADSE 89
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 137 (53.3 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 33/97 (34%), Positives = 54/97 (55%)
Query: 364 SAGGTATGPYGAI---DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKG 420
S+ G T G++ KL+VG L + ++ L++ F FG V + D ETG+ +G
Sbjct: 18 SSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRG 77
Query: 421 FGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 457
FGFV F+ + A A ++GK E+ GR ++V+ T+
Sbjct: 78 FGFVSFSCEDSANNAIKEMDGK-ELNGRQIRVNLATE 113
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 137 (53.3 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 29/74 (39%), Positives = 43/74 (58%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
KL++G L F+ TE L F +G + V + + ET + +GFGFV F + AK A
Sbjct: 6 KLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEG 65
Query: 439 LNGKLEIVGRTLKV 452
+NGK + GRT++V
Sbjct: 66 MNGK-SVDGRTIRV 78
>MGI|MGI:3580376 [details] [associations]
symbol:Lemd3 "LEM domain containing 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IDA]
[GO:0005637 "nuclear inner membrane" evidence=ISO] [GO:0005639
"integral to nuclear inner membrane" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=ISA] [GO:0030512 "negative regulation of transforming
growth factor beta receptor signaling pathway" evidence=ISO]
[GO:0030514 "negative regulation of BMP signaling pathway"
evidence=ISO] [GO:0032926 "negative regulation of activin receptor
signaling pathway" evidence=ISO] [GO:0035914 "skeletal muscle cell
differentiation" evidence=IMP] [GO:0051726 "regulation of cell
cycle" evidence=IMP] InterPro:IPR012677 InterPro:IPR018996
Pfam:PF09402 MGI:MGI:3580376 INTERPRO:IPR003887 GO:GO:0016021
GO:GO:0005635 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0051726 Gene3D:1.10.720.40 InterPro:IPR011015 Pfam:PF03020
SUPFAM:SSF63451 PROSITE:PS50954 GO:GO:0035914 SMART:SM00540
GO:GO:0005639 CTD:23592 eggNOG:NOG70255 HOGENOM:HOG000063699
HOVERGEN:HBG006319 OrthoDB:EOG4HQDHV EMBL:AC140381 EMBL:AF112300
EMBL:BC082610 EMBL:AK140538 IPI:IPI00123867 IPI:IPI00853982
RefSeq:NP_001074662.2 UniGene:Mm.339371 ProteinModelPortal:Q9WU40
SMR:Q9WU40 STRING:Q9WU40 PhosphoSite:Q9WU40 PaxDb:Q9WU40
PRIDE:Q9WU40 GeneID:380664 KEGG:mmu:380664 NextBio:401076
CleanEx:MM_LEMD3 Genevestigator:Q9WU40
GermOnline:ENSMUSG00000048661 Uniprot:Q9WU40
Length = 921
Score = 163 (62.4 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 35/95 (36%), Positives = 55/95 (57%)
Query: 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFES 610
S + CL ++NMFDP ME + L IQ + E+CS + HI VD+ S G VY++ S
Sbjct: 791 SLTPCLKIRNMFDPVMEIGDHWHLAIQEAILEKCSDNDGIVHIAVDRNSREGCVYVKCLS 850
Query: 611 TEAAASAQRAMHMRWFARRLISAIFMKPEDYEAKF 645
E A A +A+H WF +L++ +++ + Y +F
Sbjct: 851 PEYAGKAFKALHGSWFDGKLVTVKYLRLDRYHHRF 885
>UNIPROTKB|F1S1L9 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CU861981 Ensembl:ENSSSCT00000013653 KEGG:ssc:100515986
Uniprot:F1S1L9
Length = 551
Score = 160 (61.4 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 39/102 (38%), Positives = 56/102 (54%)
Query: 365 AGGTATGPYGAIDRKL---YVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGF 421
AG T P A+DR L +VGN+ + TE QL+ +F GPV +L D ETG+ KG+
Sbjct: 2 AGLTVRDP--AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGY 59
Query: 422 GFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQD 463
GF ++ E A +A LNG+ E GR L+V + ++
Sbjct: 60 GFCEYQDQETALSAMRNLNGR-EFSGRALRVDNAASEKNKEE 100
>DICTYBASE|DDB_G0274523 [details] [associations]
symbol:DDB_G0274523 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
Length = 904
Score = 129 (50.5 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 36/104 (34%), Positives = 56/104 (53%)
Query: 349 VKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQ 408
+ P A + + SN S GG T D L+V +L + ++ L +LF FG ++ V+
Sbjct: 746 LNPLSASSSSITSN-SGGGKHTN-----DTNLFVFHLPPFVDDSYLFQLFSQFGKLQSVR 799
Query: 409 LPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 452
+ D +TG+ KG+GFV+F Q + A Q +NG I + LKV
Sbjct: 800 VITDKDTGENKGYGFVKFYQTDEALKCQKEMNG-FRIGSKFLKV 842
Score = 117 (46.2 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 27/62 (43%), Positives = 39/62 (62%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
L++ L +++T+ QLRKLFEPFG + ++ LD GQ K GFV+F+ A A A+
Sbjct: 199 LFIKPLPYDVTDDQLRKLFEPFGKIIECKVMLD-HNGQSKFAGFVRFSSELDASKAIDAM 257
Query: 440 NG 441
NG
Sbjct: 258 NG 259
Score = 82 (33.9 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 213 EADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
E + ERDQ VF +P + + D+ FSK GKV ++++D S G G
Sbjct: 101 ELELERDQTNVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGN-SYGYG 152
Score = 52 (23.4 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
+F +P T+ + + F GK+ + ++++D N + SK G
Sbjct: 199 LFIKPLPYDVTDDQLRKLFEPFGKIIECKVMLDHNGQ-SKFAG 240
>UNIPROTKB|K7GQE7 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 Ensembl:ENSSSCT00000033718 Uniprot:K7GQE7
Length = 555
Score = 160 (61.4 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 39/102 (38%), Positives = 56/102 (54%)
Query: 365 AGGTATGPYGAIDRKL---YVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGF 421
AG T P A+DR L +VGN+ + TE QL+ +F GPV +L D ETG+ KG+
Sbjct: 2 AGLTVRDP--AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGY 59
Query: 422 GFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQD 463
GF ++ E A +A LNG+ E GR L+V + ++
Sbjct: 60 GFCEYQDQETALSAMRNLNGR-EFSGRALRVDNAASEKNKEE 100
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 140 (54.3 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 43/117 (36%), Positives = 57/117 (48%)
Query: 338 SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDR-KLYVGNLHFNMTETQLRK 396
S Q+ GQ + P KN + SN A G I R L V L NMT+ +LR
Sbjct: 7 SAQVSTGQRAWLLPCRFLKNTM-SNGYEDHMAEDCRGDIGRTNLIVNYLPQNMTQDELRS 65
Query: 397 LFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 453
LF G VE +L D G G+GFV + + A+ A + LNG L + +T+KVS
Sbjct: 66 LFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNG-LRLQSKTIKVS 121
Score = 118 (46.6 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 29/78 (37%), Positives = 44/78 (56%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
+++ NL + E L ++F PFG V V++ D T +CKGFGFV E A A ++L
Sbjct: 273 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 332
Query: 440 NGKLEIVGRTLKVSSVTD 457
NG + + L+VS T+
Sbjct: 333 NG-YRLGDKILQVSFKTN 349
Score = 74 (31.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 15/59 (25%), Positives = 34/59 (57%)
Query: 206 KKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 264
K P ++ +D ++ +P T++DV + FS+ G++ + R+++D+ + S+GV
Sbjct: 119 KVSYARPSSEVIKDAN-LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGV 176
Score = 58 (25.5 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 578 QGDVEEECSKYGRV--KHIYVDKR---SAGFVYLRFESTEAAASA 617
Q DVE+ S++GR+ + VD+ S G ++RF+ A A
Sbjct: 146 QKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEA 190
>UNIPROTKB|K7GS58 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 GeneID:100515986 RefSeq:XP_003135279.1
Ensembl:ENSSSCT00000034722 Uniprot:K7GS58
Length = 572
Score = 160 (61.4 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 39/102 (38%), Positives = 56/102 (54%)
Query: 365 AGGTATGPYGAIDRKL---YVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGF 421
AG T P A+DR L +VGN+ + TE QL+ +F GPV +L D ETG+ KG+
Sbjct: 2 AGLTVRDP--AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGY 59
Query: 422 GFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQD 463
GF ++ E A +A LNG+ E GR L+V + ++
Sbjct: 60 GFCEYQDQETALSAMRNLNGR-EFSGRALRVDNAASEKNKEE 100
>UNIPROTKB|I3LE23 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0071920 "cleavage body" evidence=IEA] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005847
KO:K14407 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:CU861981 KEGG:ssc:100515986 RefSeq:XP_003360436.1
Ensembl:ENSSSCT00000027214 GeneID:100515986 Uniprot:I3LE23
Length = 592
Score = 160 (61.4 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 39/102 (38%), Positives = 56/102 (54%)
Query: 365 AGGTATGPYGAIDRKL---YVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGF 421
AG T P A+DR L +VGN+ + TE QL+ +F GPV +L D ETG+ KG+
Sbjct: 2 AGLTVRDP--AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGY 59
Query: 422 GFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQD 463
GF ++ E A +A LNG+ E GR L+V + ++
Sbjct: 60 GFCEYQDQETALSAMRNLNGR-EFSGRALRVDNAASEKNKEE 100
>UNIPROTKB|Q8EK89 [details] [associations]
symbol:SO_0208 "RNA-binding protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR HSSP:P19339
HOGENOM:HOG000269562 RefSeq:NP_715849.1 ProteinModelPortal:Q8EK89
GeneID:1168093 KEGG:son:SO_0208 PATRIC:23520091 OMA:YTGPTMT
ProtClustDB:CLSK905649 Uniprot:Q8EK89
Length = 154
Score = 136 (52.9 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 37/87 (42%), Positives = 50/87 (57%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
LYVGNL + + E +++ LF FGPV V+L D +TG+ KGFGFV+ ++ A+ A L
Sbjct: 66 LYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRKTGRRKGFGFVEMSEAG-AQKAMVKL 124
Query: 440 NGKLEIVGRTLKVSSVTDHVGTQDTAA 466
N RTLKV TQD+ A
Sbjct: 125 ND-FNFQERTLKVREAK----TQDSEA 146
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 136 (52.9 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 30/74 (40%), Positives = 44/74 (59%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
KL+VG L F+ E L +F +G ++ V + D ET + +GFGFV F E AK A +
Sbjct: 7 KLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAG 66
Query: 439 LNGKLEIVGRTLKV 452
+NGK + GR ++V
Sbjct: 67 MNGKT-VDGRQIRV 79
>TIGR_CMR|SO_0208 [details] [associations]
symbol:SO_0208 "RNA-binding protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR HSSP:P19339
HOGENOM:HOG000269562 RefSeq:NP_715849.1 ProteinModelPortal:Q8EK89
GeneID:1168093 KEGG:son:SO_0208 PATRIC:23520091 OMA:YTGPTMT
ProtClustDB:CLSK905649 Uniprot:Q8EK89
Length = 154
Score = 136 (52.9 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 37/87 (42%), Positives = 50/87 (57%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
LYVGNL + + E +++ LF FGPV V+L D +TG+ KGFGFV+ ++ A+ A L
Sbjct: 66 LYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRKTGRRKGFGFVEMSEAG-AQKAMVKL 124
Query: 440 NGKLEIVGRTLKVSSVTDHVGTQDTAA 466
N RTLKV TQD+ A
Sbjct: 125 ND-FNFQERTLKVREAK----TQDSEA 146
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 136 (52.9 bits), Expect = 2.2e-08, Sum P(3) = 2.2e-08
Identities = 36/139 (25%), Positives = 70/139 (50%)
Query: 320 YRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDR 378
Y ++EFY+ A+A ++G+ ++G+ V V + + Q ++ T + D
Sbjct: 48 YCFVEFYEHRHAAAALAAMNGRKIMGKEVKVNWATTPSS--QKKDTSSSTVVSTQRSQDH 105
Query: 379 -KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 437
++VG+L +T ++ F PFG + ++ D+ TG+ KG+GFV F A+ A
Sbjct: 106 FHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQ 165
Query: 438 ALNGKLEIVGRTLKVSSVT 456
+ G+ + GR ++ + T
Sbjct: 166 QMGGQW-LGGRQIRTNWAT 183
Score = 124 (48.7 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 31/92 (33%), Positives = 56/92 (60%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 437
+ LYVGNL ++TE + +LF GP + ++ +D T + FV+F + HA AA +
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALA 64
Query: 438 ALNGKLEIVGRTLKVS-SVTDHVGTQDTAAKS 468
A+NG+ +I+G+ +KV+ + T +DT++ +
Sbjct: 65 AMNGR-KIMGKEVKVNWATTPSSQKKDTSSST 95
Score = 99 (39.9 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 38/140 (27%), Positives = 62/140 (44%)
Query: 320 YRYIEFYDVMSVPMAIA-LSGQLLLGQPVMV-----KPSEAEKNLVQSNTS--AGGTATG 371
Y ++ F++ AI + GQ L G+ + KP A K+ +SNT +
Sbjct: 149 YGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP-APKSTYESNTKQLSYDEVVN 207
Query: 372 PYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEH 431
+ +Y G + +TE +R+ F PFG + ++I KG+ FV+F E
Sbjct: 208 QSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQI------MEIRVFPDKGYSFVRFNSHES 261
Query: 432 AKAAQSALNGKLEIVGRTLK 451
A A ++NG I G +K
Sbjct: 262 AAHAIVSVNGTT-IEGHVVK 280
Score = 67 (28.6 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
+D VF + + T D+ F+ G++ D R++ D + +SKG G
Sbjct: 103 QDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYG 150
Score = 50 (22.7 bits), Expect = 2.2e-08, Sum P(3) = 2.2e-08
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMD 255
+T++ + TE + + FS+ G ++ ++IMD
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD 41
Score = 49 (22.3 bits), Expect = 2.2e-08, Sum P(3) = 2.2e-08
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 586 SKYGRVKHIYV--DKRSAGFVYLRFESTEAAASA 617
S +G++ I V DK G+ ++RF S E+AA A
Sbjct: 235 SPFGQIMEIRVFPDK---GYSFVRFNSHESAAHA 265
Score = 42 (19.8 bits), Expect = 7.1e-05, Sum P(2) = 7.1e-05
Identities = 14/57 (24%), Positives = 27/57 (47%)
Query: 580 DVEEECSKYGRVKHIYVDK-----RSAGFVYLRFESTEAAASAQRAMHMRWFARRLI 631
D++ + +GR+ V K +S G+ ++ F + A +A + M +W R I
Sbjct: 121 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 137 (53.3 bits), Expect = 2.3e-08, Sum P(3) = 2.3e-08
Identities = 33/84 (39%), Positives = 49/84 (58%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
+YV NLH ++ E L+ LF FG + V++ D ++G +GFGFV F + E A+ A + +
Sbjct: 193 IYVKNLHVDVDERCLQDLFSQFGKILSVKVMRD-DSGHSRGFGFVNFEKHEDAQKAVTDM 251
Query: 440 NGKLEIVGRTLKVSSVTDHVGTQD 463
NGK E+ GR L V V Q+
Sbjct: 252 NGK-EVSGRLLYVGRAQKRVERQN 274
Score = 118 (46.6 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 27/84 (32%), Positives = 49/84 (58%)
Query: 369 ATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQ 428
A+GP G LYVG+LH ++TE L + F P GP+ +++ D+ T + G+ ++ F Q
Sbjct: 3 ASGP-GYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQ 61
Query: 429 LEHAKAAQSALNGKLEIVGRTLKV 452
A+ A +N ++ I G+ +++
Sbjct: 62 PADAERALDTMNFEV-IKGQPIRI 84
Score = 110 (43.8 bits), Expect = 8.5e-05, Sum P(2) = 8.5e-05
Identities = 28/68 (41%), Positives = 40/68 (58%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
LYV NL ++ + +LRK F P+G + ++ E G KGFGFV F+ E A A + +
Sbjct: 296 LYVKNLDDSIDDEKLRKEFAPYGMITSAKVMT--EGGHSKGFGFVCFSSPEEATKAVTEM 353
Query: 440 NGKLEIVG 447
NG+ IVG
Sbjct: 354 NGR--IVG 359
Score = 62 (26.9 bits), Expect = 2.3e-08, Sum P(3) = 2.3e-08
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 233 TERDVYEFFSKAGKVRDVRLIMDRNSRRSKG 263
TE +YE FS AG + +R+ D +RRS G
Sbjct: 23 TEAMLYEKFSPAGPILSIRVCRDVATRRSLG 53
Score = 59 (25.8 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 586 SKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMH-MRWFARRLISAIFMKPEDY 641
S +G + K + D S GF ++ FE+ EAA +A R M+ M R++ F +
Sbjct: 120 STFGNILSCKVVCDDHGSRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSRRER 179
Query: 642 EAK 644
EA+
Sbjct: 180 EAE 182
Score = 55 (24.4 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 580 DVEEEC-----SKYGRVKHIYVDK----RSAGFVYLRFESTEAAASAQRAMHMRWFARRL 630
DV+E C S++G++ + V + S GF ++ FE E A A M+ + + RL
Sbjct: 201 DVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRL 260
Query: 631 I 631
+
Sbjct: 261 L 261
Score = 45 (20.9 bits), Expect = 2.3e-08, Sum P(3) = 2.3e-08
Identities = 18/67 (26%), Positives = 30/67 (44%)
Query: 581 VEEECSKYGRVKHIYV---DKRSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 636
+ +E + YG + V S GF ++ F S E A A M+ R + L A+
Sbjct: 310 LRKEFAPYGMITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 637 KPEDYEA 643
+ E+ +A
Sbjct: 370 RKEERKA 376
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 140 (54.3 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 31/75 (41%), Positives = 45/75 (60%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
+LYVGNL + +T ++L ++F G V VQ+ D T + +GFGFV +E AK A
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 439 LNGKLEIVGRTLKVS 453
N +I GRT+KV+
Sbjct: 177 FNSS-QIGGRTVKVN 190
Score = 119 (46.9 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
K+Y GNL +N+T L+ F V ++ + TG+ +GFGF+ F E+ ++A +
Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 279
Query: 439 LNGKLEIVGRTLKVSSVTD 457
+NG +E+ GR L+++ ++
Sbjct: 280 MNG-VEVEGRALRLNLASE 297
Score = 79 (32.9 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 19/68 (27%), Positives = 36/68 (52%)
Query: 205 EKKEVVEPEADPER---DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRS 261
E +E VE E + ++ ++ +P T ++ + F +AG V DV+++ D+ + RS
Sbjct: 97 EGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRS 156
Query: 262 KGVGNAIM 269
+G G M
Sbjct: 157 RGFGFVTM 164
Score = 49 (22.3 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 599 RSAGFVYLRFESTEAAASAQRAMH 622
RS GF ++ FES E SA M+
Sbjct: 258 RSRGFGFISFESAENVQSALATMN 281
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 136 (52.9 bits), Expect = 2.5e-08, Sum P(3) = 2.5e-08
Identities = 36/139 (25%), Positives = 70/139 (50%)
Query: 320 YRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDR 378
Y ++EFY+ A+A ++G+ ++G+ V V + + Q ++ T + D
Sbjct: 48 YCFVEFYEHRHAAAALAAMNGRKIMGKEVKVNWATTPSS--QKKDTSSSTVVSTQRSQDH 105
Query: 379 -KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 437
++VG+L +T ++ F PFG + ++ D+ TG+ KG+GFV F A+ A
Sbjct: 106 FHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQ 165
Query: 438 ALNGKLEIVGRTLKVSSVT 456
+ G+ + GR ++ + T
Sbjct: 166 QMGGQW-LGGRQIRTNWAT 183
Score = 124 (48.7 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 31/92 (33%), Positives = 56/92 (60%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 437
+ LYVGNL ++TE + +LF GP + ++ +D T + FV+F + HA AA +
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALA 64
Query: 438 ALNGKLEIVGRTLKVS-SVTDHVGTQDTAAKS 468
A+NG+ +I+G+ +KV+ + T +DT++ +
Sbjct: 65 AMNGR-KIMGKEVKVNWATTPSSQKKDTSSST 95
Score = 99 (39.9 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 38/140 (27%), Positives = 62/140 (44%)
Query: 320 YRYIEFYDVMSVPMAIA-LSGQLLLGQPVMV-----KPSEAEKNLVQSNTS--AGGTATG 371
Y ++ F++ AI + GQ L G+ + KP A K+ +SNT +
Sbjct: 149 YGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP-APKSTYESNTKQLSYDEVVN 207
Query: 372 PYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEH 431
+ +Y G + +TE +R+ F PFG + ++I KG+ FV+F E
Sbjct: 208 QSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQI------MEIRVFPDKGYSFVRFNSHES 261
Query: 432 AKAAQSALNGKLEIVGRTLK 451
A A ++NG I G +K
Sbjct: 262 AAHAIVSVNGTT-IEGHVVK 280
Score = 67 (28.6 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
+D VF + + T D+ F+ G++ D R++ D + +SKG G
Sbjct: 103 QDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYG 150
Score = 50 (22.7 bits), Expect = 2.5e-08, Sum P(3) = 2.5e-08
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMD 255
+T++ + TE + + FS+ G ++ ++IMD
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD 41
Score = 49 (22.3 bits), Expect = 2.5e-08, Sum P(3) = 2.5e-08
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 586 SKYGRVKHIYV--DKRSAGFVYLRFESTEAAASA 617
S +G++ I V DK G+ ++RF S E+AA A
Sbjct: 235 SPFGQIMEIRVFPDK---GYSFVRFNSHESAAHA 265
Score = 42 (19.8 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 14/57 (24%), Positives = 27/57 (47%)
Query: 580 DVEEECSKYGRVKHIYVDK-----RSAGFVYLRFESTEAAASAQRAMHMRWFARRLI 631
D++ + +GR+ V K +S G+ ++ F + A +A + M +W R I
Sbjct: 121 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177
>TAIR|locus:2062379 [details] [associations]
symbol:AT2G35410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0015979 "photosynthesis"
evidence=RCA] [GO:0015995 "chlorophyll biosynthetic process"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0034660
"ncRNA metabolic process" evidence=RCA] [GO:0042793 "transcription
from plastid promoter" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009579 EMBL:AC005314
UniGene:At.48551 eggNOG:COG0724 HSSP:P11940 EMBL:AY042799
EMBL:BT000365 IPI:IPI00522747 PIR:C84768 RefSeq:NP_181084.1
ProteinModelPortal:O82299 SMR:O82299 STRING:O82299 PaxDb:O82299
PRIDE:O82299 EnsemblPlants:AT2G35410.1 GeneID:818107
KEGG:ath:AT2G35410 TAIR:At2g35410 HOGENOM:HOG000240991
InParanoid:O82299 OMA:VSNLAWK PhylomeDB:O82299
ProtClustDB:CLSN2720628 ArrayExpress:O82299 Genevestigator:O82299
Uniprot:O82299
Length = 308
Score = 132 (51.5 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 39/84 (46%), Positives = 47/84 (55%)
Query: 374 GAIDRKLYVGNLHFNMTETQLRKLFEP--FGPVELVQLPLDIETGQCKGFGFVQFAQLEH 431
G KLYV NL + T LR+LF F PV + D E G+ G+GFV FA E
Sbjct: 190 GDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPE-GRSSGYGFVSFATREE 248
Query: 432 AKAAQSALNGKLEIVGR--TLKVS 453
A+ A + LNGK EI+GR TLK S
Sbjct: 249 AENAITKLNGK-EIMGRPITLKFS 271
Score = 63 (27.2 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 220 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSR 259
+R +F + +P + D+ E F + G V +V +I ++ +
Sbjct: 94 KRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGK 133
>DICTYBASE|DDB_G0284663 [details] [associations]
symbol:mrd1 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0030515 "snoRNA binding" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0284663 GO:GO:0005730
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0030515
Gene3D:3.30.70.330 GO:GO:0006364 eggNOG:COG0724 EMBL:AAFI02000070
KO:K14787 RefSeq:XP_638463.1 HSSP:Q8R3C6 ProteinModelPortal:Q54PB2
SMR:Q54PB2 STRING:Q54PB2 EnsemblProtists:DDB0233347 GeneID:8624714
KEGG:ddi:DDB_G0284663 OMA:YLEWAPR Uniprot:Q54PB2
Length = 895
Score = 135 (52.6 bits), Expect = 2.7e-08, Sum P(3) = 2.7e-08
Identities = 38/101 (37%), Positives = 50/101 (49%)
Query: 350 KPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQL 409
K E +N QS S GG P K+ + NL F T ++RKLF +G ++ V++
Sbjct: 771 KRRELPENSKQSIKSNGGQPNKP----SSKIIIKNLPFESTIKEIRKLFTAYGEIQSVRI 826
Query: 410 PLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTL 450
P G +GFGFV+F E AK A AL G GR L
Sbjct: 827 PKKPNGGH-RGFGFVEFLTEEEAKNAMEAL-GNSHFYGRHL 865
Score = 111 (44.1 bits), Expect = 8.1e-05, Sum P(3) = 8.1e-05
Identities = 22/74 (29%), Positives = 43/74 (58%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
+++V NL ++ E L K+F FG + + +P+D ++ + KG F+ + E+A A +
Sbjct: 362 RIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALND 421
Query: 439 LNGKLEIVGRTLKV 452
++GK+ GR + V
Sbjct: 422 MDGKV-FQGRLIHV 434
Score = 78 (32.5 bits), Expect = 2.7e-08, Sum P(3) = 2.7e-08
Identities = 13/42 (30%), Positives = 26/42 (61%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 264
+F + E D+ + FSK GK+ ++ + +D +S++SKG+
Sbjct: 363 IFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGI 404
Score = 54 (24.1 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRL 252
+R + +P K E +++E FSK G++ V L
Sbjct: 549 KRSNTVLLVKNIPFKTQEHELHELFSKFGELSRVVL 584
Score = 54 (24.1 bits), Expect = 8.1e-05, Sum P(3) = 8.1e-05
Identities = 19/84 (22%), Positives = 43/84 (51%)
Query: 553 PSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRS----AGFVYLRF 608
PS +++KN+ P F+ I+ ++ + + YG ++ + + K+ GF ++ F
Sbjct: 793 PSSKIIIKNL--------P-FESTIK-EIRKLFTAYGEIQSVRIPKKPNGGHRGFGFVEF 842
Query: 609 ESTEAAASAQRAM-HMRWFARRLI 631
+ E A +A A+ + ++ R L+
Sbjct: 843 LTEEEAKNAMEALGNSHFYGRHLV 866
Score = 52 (23.4 bits), Expect = 8.1e-05, Sum P(3) = 8.1e-05
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 227 QMPLKATERDVYEFFSKAGKVRDVRLIM-DRNSR 259
Q+P T++ E F K G V D ++I D SR
Sbjct: 10 QLPKHLTDKRFKEHFEKFGTVTDAKIIKKDGKSR 43
Score = 37 (18.1 bits), Expect = 2.7e-08, Sum P(3) = 2.7e-08
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 295 EVGMVFFLLGDETYTVLDPATVLVSYRYI 323
E+ +F G+ + VL PA + YI
Sbjct: 568 ELHELFSKFGELSRVVLSPARTIALIEYI 596
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 135 (52.6 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 29/74 (39%), Positives = 44/74 (59%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
KL++G L+F E L + F +G + V + D ET + +GFGFV F ++ AK A A
Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65
Query: 439 LNGKLEIVGRTLKV 452
+NGK + GR ++V
Sbjct: 66 MNGK-SVDGRQIRV 78
>GENEDB_PFALCIPARUM|PF14_0656 [details] [associations]
symbol:PF14_0656 "U2 snRNP auxiliary factor,
putative" species:5833 "Plasmodium falciparum" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AE014187 GO:GO:0000398 HSSP:P26368 KO:K12837
TIGRFAMs:TIGR01642 RefSeq:XP_001348830.1 ProteinModelPortal:Q8IKE9
IntAct:Q8IKE9 MINT:MINT-1638107 EnsemblProtists:PF14_0656:mRNA
GeneID:812238 KEGG:pfa:PF14_0656 EuPathDB:PlasmoDB:PF3D7_1468800
HOGENOM:HOG000212579 OMA:EYDERYQ ProtClustDB:CLSZ2515245
Uniprot:Q8IKE9
Length = 833
Score = 108 (43.1 bits), Expect = 2.8e-08, Sum P(3) = 2.8e-08
Identities = 21/65 (32%), Positives = 37/65 (56%)
Query: 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 436
+ +LY+ NL ++ + Q++ L E FG ++ + D+ TG KG+GF ++ + A
Sbjct: 588 ENRLYIQNLPHDLKDEQIKDLLEQFGDLKAFNIIKDLNTGLNKGYGFFEYEDSSCTQLAI 647
Query: 437 SALNG 441
ALNG
Sbjct: 648 HALNG 652
Score = 90 (36.7 bits), Expect = 2.8e-08, Sum P(3) = 2.8e-08
Identities = 29/106 (27%), Positives = 50/106 (47%)
Query: 546 AAEFIGSPSECLL-LKN-MFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDK----- 598
A+ IG S ++ L N +F + D ++ EI +V+EE KYG +++I + K
Sbjct: 721 ASRKIGEKSSKVVQLTNAVFQEDLIVDSQYE-EILKEVKEEAEKYGTLQNIVIPKPNKDL 779
Query: 599 ---RSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDY 641
G ++L + A AQ + R F +R++ A F E +
Sbjct: 780 SYTEGVGKIFLHYADEATARKAQYMFNGRLFEKRVVCAAFYSEEHF 825
Score = 53 (23.7 bits), Expect = 2.8e-08, Sum P(3) = 2.8e-08
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 213 EADPERDQRTVFAYQMPLKATERDVYEFFSKA 244
E D ++ QR ++ +P + + DV +FF+ +
Sbjct: 448 EQDTDKKQRKLYIGNIPPNSKQEDVVDFFNNS 479
>UNIPROTKB|Q8IKE9 [details] [associations]
symbol:PF14_0656 "U2 snRNP auxiliary factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AE014187 GO:GO:0000398 HSSP:P26368 KO:K12837
TIGRFAMs:TIGR01642 RefSeq:XP_001348830.1 ProteinModelPortal:Q8IKE9
IntAct:Q8IKE9 MINT:MINT-1638107 EnsemblProtists:PF14_0656:mRNA
GeneID:812238 KEGG:pfa:PF14_0656 EuPathDB:PlasmoDB:PF3D7_1468800
HOGENOM:HOG000212579 OMA:EYDERYQ ProtClustDB:CLSZ2515245
Uniprot:Q8IKE9
Length = 833
Score = 108 (43.1 bits), Expect = 2.8e-08, Sum P(3) = 2.8e-08
Identities = 21/65 (32%), Positives = 37/65 (56%)
Query: 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 436
+ +LY+ NL ++ + Q++ L E FG ++ + D+ TG KG+GF ++ + A
Sbjct: 588 ENRLYIQNLPHDLKDEQIKDLLEQFGDLKAFNIIKDLNTGLNKGYGFFEYEDSSCTQLAI 647
Query: 437 SALNG 441
ALNG
Sbjct: 648 HALNG 652
Score = 90 (36.7 bits), Expect = 2.8e-08, Sum P(3) = 2.8e-08
Identities = 29/106 (27%), Positives = 50/106 (47%)
Query: 546 AAEFIGSPSECLL-LKN-MFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDK----- 598
A+ IG S ++ L N +F + D ++ EI +V+EE KYG +++I + K
Sbjct: 721 ASRKIGEKSSKVVQLTNAVFQEDLIVDSQYE-EILKEVKEEAEKYGTLQNIVIPKPNKDL 779
Query: 599 ---RSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDY 641
G ++L + A AQ + R F +R++ A F E +
Sbjct: 780 SYTEGVGKIFLHYADEATARKAQYMFNGRLFEKRVVCAAFYSEEHF 825
Score = 53 (23.7 bits), Expect = 2.8e-08, Sum P(3) = 2.8e-08
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 213 EADPERDQRTVFAYQMPLKATERDVYEFFSKA 244
E D ++ QR ++ +P + + DV +FF+ +
Sbjct: 448 EQDTDKKQRKLYIGNIPPNSKQEDVVDFFNNS 479
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 143 (55.4 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
KL+VG L F+ E L ++F +G + V + D ET + +GFGFV F ++ AK A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 439 LNGKLEIVGRTLKV 452
+NGK + GR ++V
Sbjct: 67 MNGK-SVDGRQIRV 79
>UNIPROTKB|Q8HXM1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=ISS]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GO:GO:0005847 EMBL:AY130297 IPI:IPI00694260 RefSeq:NP_777110.1
UniGene:Bt.3723 UniGene:Bt.78724 ProteinModelPortal:Q8HXM1
SMR:Q8HXM1 STRING:Q8HXM1 PRIDE:Q8HXM1 GeneID:282588 KEGG:bta:282588
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
NextBio:20806300 ArrayExpress:Q8HXM1 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
Uniprot:Q8HXM1
Length = 572
Score = 160 (61.4 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 39/102 (38%), Positives = 56/102 (54%)
Query: 365 AGGTATGPYGAIDRKL---YVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGF 421
AG T P A+DR L +VGN+ + TE QL+ +F GPV +L D ETG+ KG+
Sbjct: 2 AGLTVRDP--AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGY 59
Query: 422 GFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQD 463
GF ++ E A +A LNG+ E GR L+V + ++
Sbjct: 60 GFCEYQDQETALSAMRNLNGR-EFSGRALRVDNAASEKNKEE 100
Score = 41 (19.5 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 15/49 (30%), Positives = 20/49 (40%)
Query: 596 VDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEAK 644
+D R+ L EA A RAM R R + A M+ EA+
Sbjct: 410 IDARAMEARGLDARGLEARAMEARAMEARAMEARAMEARAMEVRGMEAR 458
>UNIPROTKB|K7ELV6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
Length = 70
Score = 134 (52.2 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
KL+VG L F+ E L ++F +G + V + D ET + +GFGFV F ++ AK A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 439 LNGK 442
+NGK
Sbjct: 67 MNGK 70
>UNIPROTKB|J9NX69 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
Pfam:PF14327 GeneTree:ENSGT00550000074641 EMBL:AAEX03026714
Ensembl:ENSCAFT00000049845 Uniprot:J9NX69
Length = 509
Score = 160 (61.4 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 39/102 (38%), Positives = 56/102 (54%)
Query: 365 AGGTATGPYGAIDRKL---YVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGF 421
AG T P A+DR L +VGN+ + TE QL+ +F GPV +L D ETG+ KG+
Sbjct: 2 AGLTVRDP--AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGY 59
Query: 422 GFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQD 463
GF ++ E A +A LNG+ E GR L+V + ++
Sbjct: 60 GFCEYQDQETALSAMRNLNGR-EFSGRALRVDNAASEKNKEE 100
Score = 39 (18.8 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 612 EAAASAQRAMHMRWFARRLISAIFMKPEDYEAK 644
EA A RAM R R + A M+ EA+
Sbjct: 431 EARAMEARAMEARAMEARAMEARAMEVRGIEAR 463
>UNIPROTKB|F1MVI1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:DAAA02070747 EMBL:DAAA02070748
IPI:IPI00829562 Ensembl:ENSBTAT00000045511 ArrayExpress:F1MVI1
Uniprot:F1MVI1
Length = 592
Score = 160 (61.4 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 39/102 (38%), Positives = 56/102 (54%)
Query: 365 AGGTATGPYGAIDRKL---YVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGF 421
AG T P A+DR L +VGN+ + TE QL+ +F GPV +L D ETG+ KG+
Sbjct: 2 AGLTVRDP--AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGY 59
Query: 422 GFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQD 463
GF ++ E A +A LNG+ E GR L+V + ++
Sbjct: 60 GFCEYQDQETALSAMRNLNGR-EFSGRALRVDNAASEKNKEE 100
Score = 41 (19.5 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 15/49 (30%), Positives = 20/49 (40%)
Query: 596 VDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEAK 644
+D R+ L EA A RAM R R + A M+ EA+
Sbjct: 430 IDARAMEARGLDARGLEARAMEARAMEARAMEARAMEARAMEVRGMEAR 478
>UNIPROTKB|Q5ZLS0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
CTD:1478 HOVERGEN:HBG051145 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HOGENOM:HOG000214372 EMBL:AADN02013338
EMBL:AJ719664 IPI:IPI00603977 RefSeq:NP_001006433.1
UniGene:Gga.7714 SMR:Q5ZLS0 STRING:Q5ZLS0
Ensembl:ENSGALT00000010924 GeneID:422258 KEGG:gga:422258
NextBio:20824917 Uniprot:Q5ZLS0
Length = 475
Score = 156 (60.0 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 38/102 (37%), Positives = 56/102 (54%)
Query: 365 AGGTATGPYGAIDRKL---YVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGF 421
AG + P A+DR L +VGN+ + TE QL+ +F GPV +L D ETG+ KG+
Sbjct: 2 AGLSVRDP--AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGY 59
Query: 422 GFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQD 463
GF ++ E A +A LNG+ E GR L+V + ++
Sbjct: 60 GFCEYQDQETALSAMRNLNGR-EFSGRALRVDNAASEKNKEE 100
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 130 (50.8 bits), Expect = 4.0e-08, Sum P(3) = 4.0e-08
Identities = 29/83 (34%), Positives = 48/83 (57%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
+Y+ N +M + +LR++F FG V++ +D +TG+ +GFGFV + E A+ A S +
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 440 NGKLEIVGRTLKVSSVTDHVGTQ 462
NGK E+ GR + V + Q
Sbjct: 252 NGK-EVNGRMIYVGRAQKRIERQ 273
Score = 120 (47.3 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 29/84 (34%), Positives = 48/84 (57%)
Query: 369 ATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQ 428
ATG G LYVG+LH ++TE L + F P GP+ +++ DI T + G+ ++ F Q
Sbjct: 3 ATGA-GYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQ 61
Query: 429 LEHAKAAQSALNGKLEIVGRTLKV 452
A+ A +N ++ I GR +++
Sbjct: 62 PADAERALDTMNFEV-IKGRPIRI 84
Score = 110 (43.8 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
LYV NL + + +LRK F P+G + ++ E G KGFGFV F+ E A A + +
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSAKVMT--EGGHSKGFGFVCFSSPEEATKAVTEM 353
Query: 440 NGKL 443
NG++
Sbjct: 354 NGRI 357
Score = 63 (27.2 bits), Expect = 4.0e-08, Sum P(3) = 4.0e-08
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 233 TERDVYEFFSKAGKVRDVRLIMDRNSRRSKG 263
TE +YE FS AG + +R+ D +RRS G
Sbjct: 23 TEAMLYEKFSPAGPIMSIRVCRDIATRRSLG 53
Score = 50 (22.7 bits), Expect = 4.0e-08, Sum P(3) = 4.0e-08
Identities = 22/77 (28%), Positives = 35/77 (45%)
Query: 572 DFDLEIQGD-VEEECSKYGRVKHIYV---DKRSAGFVYLRFESTEAAASAQRAMHMRWFA 627
+ D I D + +E S YG + V S GF ++ F S E A A M+ R +
Sbjct: 300 NLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVS 359
Query: 628 RR-LISAIFMKPEDYEA 643
+ L A+ + E+ +A
Sbjct: 360 TKPLYVALAQRKEERKA 376
Score = 44 (20.5 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 16/64 (25%), Positives = 31/64 (48%)
Query: 586 SKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMH-MRWFARRLISAIFMKPEDY 641
S +G + K + + S G+ ++ FE+ EAA A + M+ M R++ F +
Sbjct: 120 SAFGNILSCKVVCDEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRER 179
Query: 642 EAKF 645
E ++
Sbjct: 180 ELEY 183
>FB|FBgn0027841 [details] [associations]
symbol:CstF-64 "Cleavage stimulation factor 64 kilodalton
subunit" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS;NAS] [GO:0005848 "mRNA cleavage stimulating
factor complex" evidence=ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006379
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
HSSP:P33240 GO:GO:0005848 EMBL:BT004860 ProteinModelPortal:Q86NL1
SMR:Q86NL1 STRING:Q86NL1 PRIDE:Q86NL1 FlyBase:FBgn0027841
InParanoid:Q86NL1 OrthoDB:EOG4FBG8R ChiTaRS:CstF-64
ArrayExpress:Q86NL1 Bgee:Q86NL1 Uniprot:Q86NL1
Length = 437
Score = 155 (59.6 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 33/77 (42%), Positives = 50/77 (64%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 437
R ++VGN+ + TE +L+++F GPV ++L D E+G+ KGFGF ++ E A +A
Sbjct: 16 RSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMR 75
Query: 438 ALNGKLEIVGRTLKVSS 454
LNG EI GRTL+V +
Sbjct: 76 NLNG-YEIGGRTLRVDN 91
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 129 (50.5 bits), Expect = 4.2e-08, Sum P(3) = 4.2e-08
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
+Y+ N +M + +LR++F FG V++ +D TG+ KGFGFV F + E A+ A + +
Sbjct: 193 VYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMD-HTGRSKGFGFVNFEKHEEAQKAVADM 251
Query: 440 NGKLEIVGRTLKV 452
NGK EI GR + V
Sbjct: 252 NGK-EINGRMVYV 263
Score = 117 (46.2 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 27/84 (32%), Positives = 49/84 (58%)
Query: 369 ATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQ 428
A+GP G LYVG+LH ++TE L + F P GP+ +++ D+ + + G+ ++ F Q
Sbjct: 3 ASGP-GYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQ 61
Query: 429 LEHAKAAQSALNGKLEIVGRTLKV 452
A+ A +N ++ I GR +++
Sbjct: 62 PADAERALDTMNFEV-IKGRPVRI 84
Score = 113 (44.8 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 36/129 (27%), Positives = 61/129 (47%)
Query: 320 YRYIEFYDVMSVPMAIA-LSGQLLLGQPVMV----KPSEAEKNLVQSNTSAGGTATGPYG 374
+ ++ F A+A ++G+ + G+ V V K E + L + Y
Sbjct: 233 FGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQ 292
Query: 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKA 434
++ LYV NL + + +LRK F P+G + ++ E G KGFGFV F+ E A
Sbjct: 293 GVN--LYVKNLDDGIDDERLRKEFSPYGTITSAKVMT--EGGHSKGFGFVCFSSPEEATK 348
Query: 435 AQSALNGKL 443
A + +NG++
Sbjct: 349 AVTEMNGRI 357
Score = 65 (27.9 bits), Expect = 4.2e-08, Sum P(3) = 4.2e-08
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 233 TERDVYEFFSKAGKVRDVRLIMDRNSRRSKG 263
TE +YE FS AG + +R+ D SRRS G
Sbjct: 23 TEAMLYEKFSPAGPILSIRVCRDVASRRSLG 53
Score = 52 (23.4 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 586 SKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMH-MRWFARRLISAIFMKPEDY 641
S +G + K + + S G ++ FE+ EAA A + M+ M R++ F ++
Sbjct: 120 SAFGNILSCKVVCDENGSRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFKSRKER 179
Query: 642 EAKF 645
EA+F
Sbjct: 180 EAEF 183
Score = 49 (22.3 bits), Expect = 4.2e-08, Sum P(3) = 4.2e-08
Identities = 19/67 (28%), Positives = 31/67 (46%)
Query: 581 VEEECSKYGRVKHIYV---DKRSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 636
+ +E S YG + V S GF ++ F S E A A M+ R + + L A+
Sbjct: 310 LRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 637 KPEDYEA 643
+ E+ +A
Sbjct: 370 RKEERKA 376
Score = 49 (22.3 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKG 263
VF + + +Y+ FS G + +++ D N R G
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENGSRGHG 141
Score = 47 (21.6 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 581 VEEECSKYGRVKHIYV--DK--RSAGFVYLRFESTEAAASAQRAMHMRWFARRLI 631
+ E S++G+ + V D RS GF ++ FE E A A M+ + R++
Sbjct: 207 LREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMV 261
Score = 39 (18.8 bits), Expect = 0.00032, Sum P(3) = 0.00032
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 447 GRTLKVSSVTDHVG 460
G+TL V + DH G
Sbjct: 215 GKTLSVKVMMDHTG 228
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 134 (52.2 bits), Expect = 4.2e-08, Sum P(3) = 4.2e-08
Identities = 32/84 (38%), Positives = 49/84 (58%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
+YV NLH ++ E +L+ LF FG + V++ D ++G +GFGFV F + E A+ A +
Sbjct: 193 IYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRD-DSGHSRGFGFVNFEKHEEAQKAVVNM 251
Query: 440 NGKLEIVGRTLKVSSVTDHVGTQD 463
NG+ E+ GR L V V Q+
Sbjct: 252 NGR-EVSGRLLYVGRAQKRVERQN 274
Score = 118 (46.6 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 27/84 (32%), Positives = 49/84 (58%)
Query: 369 ATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQ 428
A+GP G LYVG+LH ++TE L + F P GP+ +++ D+ T + G+ ++ F Q
Sbjct: 3 ASGP-GYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQ 61
Query: 429 LEHAKAAQSALNGKLEIVGRTLKV 452
A+ A +N ++ I G+ +++
Sbjct: 62 PADAERALDTMNFEV-IKGQPIRI 84
Score = 111 (44.1 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 28/68 (41%), Positives = 40/68 (58%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
LYV NL ++ + +LRK F P+G + ++ E G KGFGFV F+ E A A + +
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEATKAVTEM 353
Query: 440 NGKLEIVG 447
NG+ IVG
Sbjct: 354 NGR--IVG 359
Score = 62 (26.9 bits), Expect = 4.2e-08, Sum P(3) = 4.2e-08
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 233 TERDVYEFFSKAGKVRDVRLIMDRNSRRSKG 263
TE +YE FS AG + +R+ D +RRS G
Sbjct: 23 TEAMLYEKFSPAGPILSIRVCRDVATRRSLG 53
Score = 50 (22.7 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 21/72 (29%), Positives = 34/72 (47%)
Query: 561 NMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDK-RSAGFVYLRFESTEAAASAQR 619
N++ + D D + +Q D+ + K VK + D S GF ++ FE E A A
Sbjct: 192 NIYVKNLHVDVD-EQRLQ-DLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVV 249
Query: 620 AMHMRWFARRLI 631
M+ R + RL+
Sbjct: 250 NMNGREVSGRLL 261
Score = 46 (21.3 bits), Expect = 4.2e-08, Sum P(3) = 4.2e-08
Identities = 19/67 (28%), Positives = 30/67 (44%)
Query: 581 VEEECSKYGRVKHIYV---DKRSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 636
+ +E S YG + V S GF ++ F S E A A M+ R + L A+
Sbjct: 310 LRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 637 KPEDYEA 643
+ E+ +A
Sbjct: 370 RKEERKA 376
Score = 46 (21.3 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 586 SKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMH 622
S +G + K + + S GF ++ FE+ EAA +A M+
Sbjct: 120 STFGNILSCKVVCDEHGSRGFGFVHFETHEAAQNAISTMN 159
>FB|FBgn0086675 [details] [associations]
symbol:fne "found in neurons" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0051252 "regulation of
RNA metabolic process" evidence=IMP] [GO:0008266 "poly(U) RNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008049 "male courtship behavior" evidence=IMP]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 KO:K13208
OMA:SNSRNCP HSSP:Q60900 GO:GO:0051252 EMBL:AF239667 EMBL:BT120384
RefSeq:NP_001096965.1 RefSeq:NP_001245646.1 RefSeq:NP_001245648.1
RefSeq:NP_001245649.1 RefSeq:NP_572842.1 UniGene:Dm.3314 SMR:Q9VYI0
IntAct:Q9VYI0 MINT:MINT-1646975 STRING:Q9VYI0
EnsemblMetazoa:FBtr0073712 EnsemblMetazoa:FBtr0113493
EnsemblMetazoa:FBtr0306738 EnsemblMetazoa:FBtr0308694
EnsemblMetazoa:FBtr0308695 EnsemblMetazoa:FBtr0333319
EnsemblMetazoa:FBtr0333320 GeneID:32245 KEGG:dme:Dmel_CG4396
UCSC:CG4396-RA CTD:32245 FlyBase:FBgn0086675 InParanoid:Q9VYI0
OrthoDB:EOG44B8HT GenomeRNAi:32245 NextBio:777561 Uniprot:Q9VYI0
Length = 356
Score = 136 (52.9 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 43/132 (32%), Positives = 64/132 (48%)
Query: 332 PMAIALSGQLLLGQPVM--VKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNM 389
P A A + +L P ++ S +L+ ++ G TG I +V NL
Sbjct: 229 PQAAAATRRLAGALPSAGRIRYSPLAGDLLANSILPGNAMTGSGWCI----FVYNLAPET 284
Query: 390 TETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRT 449
E L +LF PFG V+ V++ D++T +CKGFGFV + A A +LNG + R
Sbjct: 285 EENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAVVAIQSLNG-YTLGNRV 343
Query: 450 LKVSSVTDHVGT 461
L+VS T+ T
Sbjct: 344 LQVSFKTNKTKT 355
Score = 59 (25.8 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 228 MPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
+P ++ D+ F+ GK+ R++ D S SKGVG
Sbjct: 137 LPKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVG 174
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 133 (51.9 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 29/74 (39%), Positives = 43/74 (58%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
+YVGN F TE +L F G + V++ D ETG+ +GF F++FA+ A+ A +
Sbjct: 7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQM 66
Query: 440 NGKLEIVGRTLKVS 453
NG E GR L+V+
Sbjct: 67 NGA-EFNGRPLRVN 79
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 146 (56.5 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 30/74 (40%), Positives = 46/74 (62%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
KL++G L ++ TE L + F +G + V + D ET + +GFGFV F E AK A +A
Sbjct: 24 KLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAA 83
Query: 439 LNGKLEIVGRTLKV 452
+NGK ++ GR ++V
Sbjct: 84 MNGK-QVDGRMIRV 96
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 121 (47.7 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 33/80 (41%), Positives = 43/80 (53%)
Query: 376 IDRK--LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAK 433
ID K L V L NM++ +LR LF G VE +L D G G+GFV + A+
Sbjct: 30 IDSKTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAE 89
Query: 434 AAQSALNGKLEIVGRTLKVS 453
A S LNG L + +T+KVS
Sbjct: 90 RAISTLNG-LRLQSKTIKVS 108
Score = 117 (46.2 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 29/77 (37%), Positives = 43/77 (55%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
+++ NL + E L ++F PFG V V++ D T +CKGFGFV E A A ++L
Sbjct: 260 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASL 319
Query: 440 NGKLEIVGRTLKVSSVT 456
NG + + L+VS T
Sbjct: 320 NG-YRLGDKILQVSFKT 335
Score = 79 (32.9 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 17/59 (28%), Positives = 33/59 (55%)
Query: 206 KKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 264
K P +D +D ++ +P T++DV E F + G++ + R+++D+ S S+GV
Sbjct: 106 KVSYARPSSDSIKDAN-LYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGV 163
Score = 61 (26.5 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 578 QGDVEEECSKYGRV--KHIYVDKRSA---GFVYLRFESTEAAASA 617
Q DVEE +YGR+ + VD+ S G ++RF+ A A
Sbjct: 133 QKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDA 177
Score = 59 (25.8 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 214 ADPERDQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
AD D +T + +P ++ ++ FS G+V +LI D+ + S G G
Sbjct: 26 ADELIDSKTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYG 78
>UNIPROTKB|G1K177 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=IEA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005847 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:DAAA02070747 EMBL:DAAA02070748 Ensembl:ENSBTAT00000004619
Uniprot:G1K177
Length = 644
Score = 160 (61.4 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 39/102 (38%), Positives = 56/102 (54%)
Query: 365 AGGTATGPYGAIDRKL---YVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGF 421
AG T P A+DR L +VGN+ + TE QL+ +F GPV +L D ETG+ KG+
Sbjct: 2 AGLTVRDP--AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGY 59
Query: 422 GFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQD 463
GF ++ E A +A LNG+ E GR L+V + ++
Sbjct: 60 GFCEYQDQETALSAMRNLNGR-EFSGRALRVDNAASEKNKEE 100
Score = 41 (19.5 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 15/49 (30%), Positives = 20/49 (40%)
Query: 596 VDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEAK 644
+D R+ L EA A RAM R R + A M+ EA+
Sbjct: 412 IDARAMEARGLDARGLEARAMEARAMEARAMEARAMEARAMEVRGMEAR 460
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 133 (51.9 bits), Expect = 5.1e-08, Sum P(3) = 5.1e-08
Identities = 33/83 (39%), Positives = 47/83 (56%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
+YV NLH ++ E L+ LF FG + V++ D ++G +GFGFV F + E A+ A +
Sbjct: 193 IYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRD-DSGHSRGFGFVNFQKHEEAQKAVMDM 251
Query: 440 NGKLEIVGRTLKVSSVTDHVGTQ 462
NGK E+ GR L V V Q
Sbjct: 252 NGK-EVSGRLLYVGRAQKRVERQ 273
Score = 118 (46.6 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 27/84 (32%), Positives = 49/84 (58%)
Query: 369 ATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQ 428
A+GP G LYVG+LH ++TE L + F P GP+ +++ D+ T + G+ ++ F Q
Sbjct: 3 ASGP-GFPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQ 61
Query: 429 LEHAKAAQSALNGKLEIVGRTLKV 452
A+ A +N ++ I G+ +++
Sbjct: 62 PADAERALDTMNFEV-IKGQPIRI 84
Score = 110 (43.8 bits), Expect = 9.8e-05, Sum P(2) = 9.8e-05
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
LYV NL ++ + +LRK F P+G + ++ E G KGFGFV F+ E A A + +
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEATKAVTEM 353
Query: 440 NGKL 443
NG++
Sbjct: 354 NGRI 357
Score = 62 (26.9 bits), Expect = 5.1e-08, Sum P(3) = 5.1e-08
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 233 TERDVYEFFSKAGKVRDVRLIMDRNSRRSKG 263
TE +YE FS AG + +R+ D +RRS G
Sbjct: 23 TEAMLYEKFSPAGPILSIRVCRDVATRRSLG 53
Score = 51 (23.0 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 16/62 (25%), Positives = 34/62 (54%)
Query: 574 DLEIQGDVEEECSKYGRVKHIYVDK----RSAGFVYLRFESTEAAASAQRAMHMRWFARR 629
D++ QG +++ S++G++ + V + S GF ++ F+ E A A M+ + + R
Sbjct: 201 DVDEQG-LQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGR 259
Query: 630 LI 631
L+
Sbjct: 260 LL 261
Score = 49 (22.3 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 586 SKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMH 622
S +G + K + D S GF ++ FE+ EAA A M+
Sbjct: 120 STFGNILSCKVVCDDHGSRGFGFVHFETHEAAQQAITTMN 159
Score = 47 (21.6 bits), Expect = 5.1e-08, Sum P(3) = 5.1e-08
Identities = 19/67 (28%), Positives = 30/67 (44%)
Query: 581 VEEECSKYGRVKHIYV---DKRSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 636
+ +E S YG + V S GF ++ F S E A A M+ R + L A+
Sbjct: 310 LRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRILGTKPLYVALAQ 369
Query: 637 KPEDYEA 643
+ E+ +A
Sbjct: 370 RKEERKA 376
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 127 (49.8 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
++V NL + E+ L +LF PFG V V++ D T +CKGFGFV + A A ++L
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329
Query: 440 NGKLEIVGRTLKVSSVTD 457
NG + R L+VS T+
Sbjct: 330 NG-YRLGDRVLQVSFKTN 346
Score = 120 (47.3 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 30/74 (40%), Positives = 42/74 (56%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
L V L NMT+ + R LF G +E +L D TGQ G+GFV + + A+ A + L
Sbjct: 46 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 105
Query: 440 NGKLEIVGRTLKVS 453
NG L + +T+KVS
Sbjct: 106 NG-LRLQTKTIKVS 118
Score = 110 (43.8 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 35/115 (30%), Positives = 57/115 (49%)
Query: 337 LSGQLL-LGQPVMVKPSEAEKNL-------VQSNTSAGGTATGPYGAI-DRKLYVGNLHF 387
++GQ L G + P +AEK + +Q+ T A +I D LYV L
Sbjct: 80 ITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPK 139
Query: 388 NMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK 442
MT+ +L +LF +G + ++ +D TG +G GF++F + A+ A LNG+
Sbjct: 140 TMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 194
Score = 68 (29.0 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 15/60 (25%), Positives = 33/60 (55%)
Query: 206 KKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
K P + RD ++ +P T++++ + FS+ G++ R+++D+ + S+GVG
Sbjct: 116 KVSYARPSSASIRDAN-LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVG 174
Score = 54 (24.1 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 219 DQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
D +T + +P T+ + F G++ +L+ D+ + +S G G
Sbjct: 41 DSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYG 88
Score = 48 (22.0 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 578 QGDVEEECSKYGRV--KHIYVDKR---SAGFVYLRFESTEAAASAQRAMH 622
Q ++E+ S+YGR+ I VD+ S G ++RF+ A A + ++
Sbjct: 143 QKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 192
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 108 (43.1 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQ 428
+K++VG L+ TE ++R+ F FG +E ++LP D +T + +GF F+ F +
Sbjct: 129 KKIFVGGLNPETTEEKIREYFGSFGEIETIELPTDPKTSKRRGFVFITFKE 179
Score = 87 (35.7 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDD 273
E D +F + +++D+ ++FSK G+V D + MD N+ RS+G G + D
Sbjct: 41 EEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKESD 97
>UNIPROTKB|K7EQ97 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:14015 EMBL:AC015961 EMBL:AC090386
EMBL:AC093332 EMBL:AC129908 Ensembl:ENST00000587819 Uniprot:K7EQ97
Length = 154
Score = 115 (45.5 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 28/71 (39%), Positives = 42/71 (59%)
Query: 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 436
DRKL+VG L+ +E +R+LFE FG +E + L G KG FV+++ A+AA
Sbjct: 17 DRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTI-LRGPDGNSKGCAFVKYSSHAEAQAAI 75
Query: 437 SALNGKLEIVG 447
+AL+G + G
Sbjct: 76 NALHGSQTMPG 86
Score = 38 (18.4 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 5/13 (38%), Positives = 11/13 (84%)
Query: 343 LGQPVMVKPSEAE 355
+ +P+ VKP+++E
Sbjct: 1 MNRPIQVKPADSE 13
>TAIR|locus:2159401 [details] [associations]
symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
"copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
Length = 309
Score = 151 (58.2 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 32/79 (40%), Positives = 50/79 (63%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
KL++G + ++M E LR+ F +G V ++ LD ETG+ +GFGFV F E A +A A
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 439 LNGKLEIVGRTLKVSSVTD 457
L+G+ ++ GR +KV+ D
Sbjct: 101 LDGR-DLHGRVVKVNYAND 118
>UNIPROTKB|E2RP40 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:1478 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AAEX03026714
RefSeq:XP_861405.1 Ensembl:ENSCAFT00000027826 GeneID:492015
KEGG:cfa:492015 Uniprot:E2RP40
Length = 577
Score = 160 (61.4 bits), Expect = 5.4e-08, Sum P(2) = 5.4e-08
Identities = 39/102 (38%), Positives = 56/102 (54%)
Query: 365 AGGTATGPYGAIDRKL---YVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGF 421
AG T P A+DR L +VGN+ + TE QL+ +F GPV +L D ETG+ KG+
Sbjct: 2 AGLTVRDP--AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGY 59
Query: 422 GFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQD 463
GF ++ E A +A LNG+ E GR L+V + ++
Sbjct: 60 GFCEYQDQETALSAMRNLNGR-EFSGRALRVDNAASEKNKEE 100
Score = 39 (18.8 bits), Expect = 5.4e-08, Sum P(2) = 5.4e-08
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 612 EAAASAQRAMHMRWFARRLISAIFMKPEDYEAK 644
EA A RAM R R + A M+ EA+
Sbjct: 431 EARAMEARAMEARAMEARAMEARAMEVRGIEAR 463
>UNIPROTKB|P33240 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IDA]
[GO:0071920 "cleavage body" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006379 "mRNA cleavage"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0003723 GO:GO:0000398 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0005847 GO:GO:0006379 GO:GO:0006369 Reactome:REACT_78
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327
Pfam:PF14304 EMBL:M85085 EMBL:BT009778 EMBL:Z83819 EMBL:Z95327
EMBL:BC017712 EMBL:BC033135 IPI:IPI00013256 IPI:IPI00607841
PIR:A40220 RefSeq:NP_001316.1 UniGene:Hs.132370 PDB:1P1T PDB:2J8P
PDBsum:1P1T PDBsum:2J8P ProteinModelPortal:P33240 SMR:P33240
DIP:DIP-36129N IntAct:P33240 MINT:MINT-1375144 STRING:P33240
PhosphoSite:P33240 DMDM:461847 PaxDb:P33240 PRIDE:P33240 DNASU:1478
Ensembl:ENST00000372972 Ensembl:ENST00000413437 GeneID:1478
KEGG:hsa:1478 UCSC:uc004egh.3 UCSC:uc004egi.3 GeneCards:GC0XP100075
HGNC:HGNC:2484 HPA:CAB004680 HPA:HPA000427 MIM:600368
neXtProt:NX_P33240 PharmGKB:PA26986 InParanoid:P33240
OrthoDB:EOG4640BW PhylomeDB:P33240 EvolutionaryTrace:P33240
GenomeRNAi:1478 NextBio:6073 ArrayExpress:P33240 Bgee:P33240
CleanEx:HS_CSTF2 Genevestigator:P33240 GermOnline:ENSG00000101811
Uniprot:P33240
Length = 577
Score = 160 (61.4 bits), Expect = 5.4e-08, Sum P(2) = 5.4e-08
Identities = 39/102 (38%), Positives = 56/102 (54%)
Query: 365 AGGTATGPYGAIDRKL---YVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGF 421
AG T P A+DR L +VGN+ + TE QL+ +F GPV +L D ETG+ KG+
Sbjct: 2 AGLTVRDP--AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGY 59
Query: 422 GFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQD 463
GF ++ E A +A LNG+ E GR L+V + ++
Sbjct: 60 GFCEYQDQETALSAMRNLNGR-EFSGRALRVDNAASEKNKEE 100
Score = 39 (18.8 bits), Expect = 5.4e-08, Sum P(2) = 5.4e-08
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 612 EAAASAQRAMHMRWFARRLISAIFMKPEDYEAK 644
EA A RAM R R + A M+ EA+
Sbjct: 431 EARAMEARAMEARAMEARAMEARAMEVRGMEAR 463
>UNIPROTKB|Q5RDA3 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9601 "Pongo abelii" [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0071920 "cleavage body" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0005847 CTD:1478 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CR858012 RefSeq:NP_001125111.1 UniGene:Pab.17359
ProteinModelPortal:Q5RDA3 SMR:Q5RDA3 GeneID:100171993
KEGG:pon:100171993 InParanoid:Q5RDA3 Uniprot:Q5RDA3
Length = 577
Score = 160 (61.4 bits), Expect = 5.4e-08, Sum P(2) = 5.4e-08
Identities = 39/102 (38%), Positives = 56/102 (54%)
Query: 365 AGGTATGPYGAIDRKL---YVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGF 421
AG T P A+DR L +VGN+ + TE QL+ +F GPV +L D ETG+ KG+
Sbjct: 2 AGLTVRDP--AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGY 59
Query: 422 GFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQD 463
GF ++ E A +A LNG+ E GR L+V + ++
Sbjct: 60 GFCEYQDQETALSAMRNLNGR-EFSGRALRVDNAASEKNKEE 100
Score = 39 (18.8 bits), Expect = 5.4e-08, Sum P(2) = 5.4e-08
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 612 EAAASAQRAMHMRWFARRLISAIFMKPEDYEAK 644
EA A RAM R R + A M+ EA+
Sbjct: 431 EARAMEARAMEARAMEARAMEARAMEVRGMEAR 463
>UNIPROTKB|E1BVJ6 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AADN02013338 IPI:IPI00821790
Ensembl:ENSGALT00000039789 ArrayExpress:E1BVJ6 Uniprot:E1BVJ6
Length = 592
Score = 156 (60.0 bits), Expect = 5.4e-08, P = 5.4e-08
Identities = 38/102 (37%), Positives = 56/102 (54%)
Query: 365 AGGTATGPYGAIDRKL---YVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGF 421
AG + P A+DR L +VGN+ + TE QL+ +F GPV +L D ETG+ KG+
Sbjct: 2 AGLSVRDP--AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGY 59
Query: 422 GFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQD 463
GF ++ E A +A LNG+ E GR L+V + ++
Sbjct: 60 GFCEYQDQETALSAMRNLNGR-EFSGRALRVDNAASEKNKEE 100
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 112 (44.5 bits), Expect = 5.4e-08, Sum P(2) = 5.4e-08
Identities = 20/56 (35%), Positives = 37/56 (66%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAK 433
+K++VG L+ TE ++R+ F FG +E ++LP+D ++ + +GF F+ F + E K
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVK 209
Score = 81 (33.6 bits), Expect = 5.4e-08, Sum P(2) = 5.4e-08
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRD 272
E D +F + +++D+ ++F+K G+V D + MD N+ RS+G G I+ +D
Sbjct: 66 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFG-FILFKD 120
>UNIPROTKB|E1C8T0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AADN02013338
IPI:IPI00682692 Ensembl:ENSGALT00000010922 ArrayExpress:E1C8T0
Uniprot:E1C8T0
Length = 608
Score = 156 (60.0 bits), Expect = 5.6e-08, P = 5.6e-08
Identities = 38/102 (37%), Positives = 56/102 (54%)
Query: 365 AGGTATGPYGAIDRKL---YVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGF 421
AG + P A+DR L +VGN+ + TE QL+ +F GPV +L D ETG+ KG+
Sbjct: 2 AGLSVRDP--AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGY 59
Query: 422 GFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQD 463
GF ++ E A +A LNG+ E GR L+V + ++
Sbjct: 60 GFCEYQDQETALSAMRNLNGR-EFSGRALRVDNAASEKNKEE 100
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 127 (49.8 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
++V NL + E+ L +LF PFG V V++ D T +CKGFGFV + A A ++L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 440 NGKLEIVGRTLKVSSVTD 457
NG + R L+VS T+
Sbjct: 345 NG-YRLGDRVLQVSFKTN 361
Score = 120 (47.3 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 30/74 (40%), Positives = 42/74 (56%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
L V L NMT+ + R LF G +E +L D TGQ G+GFV + + A+ A + L
Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107
Query: 440 NGKLEIVGRTLKVS 453
NG L + +T+KVS
Sbjct: 108 NG-LRLQTKTIKVS 120
Score = 110 (43.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 35/115 (30%), Positives = 57/115 (49%)
Query: 337 LSGQLL-LGQPVMVKPSEAEKNL-------VQSNTSAGGTATGPYGAI-DRKLYVGNLHF 387
++GQ L G + P +AEK + +Q+ T A +I D LYV L
Sbjct: 82 ITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPK 141
Query: 388 NMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK 442
MT+ +L +LF +G + ++ +D TG +G GF++F + A+ A LNG+
Sbjct: 142 TMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196
Score = 68 (29.0 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 15/60 (25%), Positives = 33/60 (55%)
Query: 206 KKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
K P + RD ++ +P T++++ + FS+ G++ R+++D+ + S+GVG
Sbjct: 118 KVSYARPSSASIRDAN-LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVG 176
Score = 54 (24.1 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 219 DQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
D +T + +P T+ + F G++ +L+ D+ + +S G G
Sbjct: 43 DSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYG 90
Score = 48 (22.0 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 578 QGDVEEECSKYGRV--KHIYVDKR---SAGFVYLRFESTEAAASAQRAMH 622
Q ++E+ S+YGR+ I VD+ S G ++RF+ A A + ++
Sbjct: 145 QKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 194
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 127 (49.8 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
++V NL + E+ L +LF PFG V V++ D T +CKGFGFV + A A ++L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 440 NGKLEIVGRTLKVSSVTD 457
NG + R L+VS T+
Sbjct: 345 NG-YRLGDRVLQVSFKTN 361
Score = 120 (47.3 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 30/74 (40%), Positives = 42/74 (56%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
L V L NMT+ + R LF G +E +L D TGQ G+GFV + + A+ A + L
Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107
Query: 440 NGKLEIVGRTLKVS 453
NG L + +T+KVS
Sbjct: 108 NG-LRLQTKTIKVS 120
Score = 110 (43.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 35/115 (30%), Positives = 57/115 (49%)
Query: 337 LSGQLL-LGQPVMVKPSEAEKNL-------VQSNTSAGGTATGPYGAI-DRKLYVGNLHF 387
++GQ L G + P +AEK + +Q+ T A +I D LYV L
Sbjct: 82 ITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPK 141
Query: 388 NMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK 442
MT+ +L +LF +G + ++ +D TG +G GF++F + A+ A LNG+
Sbjct: 142 TMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196
Score = 68 (29.0 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 15/60 (25%), Positives = 33/60 (55%)
Query: 206 KKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
K P + RD ++ +P T++++ + FS+ G++ R+++D+ + S+GVG
Sbjct: 118 KVSYARPSSASIRDAN-LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVG 176
Score = 54 (24.1 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 219 DQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
D +T + +P T+ + F G++ +L+ D+ + +S G G
Sbjct: 43 DSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYG 90
Score = 48 (22.0 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 578 QGDVEEECSKYGRV--KHIYVDKR---SAGFVYLRFESTEAAASAQRAMH 622
Q ++E+ S+YGR+ I VD+ S G ++RF+ A A + ++
Sbjct: 145 QKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 194
>UNIPROTKB|E7EWR4 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 EMBL:Z83819
EMBL:Z95327 HGNC:HGNC:2484 IPI:IPI00902991
ProteinModelPortal:E7EWR4 SMR:E7EWR4 Ensembl:ENST00000415585
UCSC:uc010nnd.3 OMA:GMEARSM ArrayExpress:E7EWR4 Bgee:E7EWR4
Uniprot:E7EWR4
Length = 597
Score = 160 (61.4 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 39/102 (38%), Positives = 56/102 (54%)
Query: 365 AGGTATGPYGAIDRKL---YVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGF 421
AG T P A+DR L +VGN+ + TE QL+ +F GPV +L D ETG+ KG+
Sbjct: 2 AGLTVRDP--AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGY 59
Query: 422 GFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQD 463
GF ++ E A +A LNG+ E GR L+V + ++
Sbjct: 60 GFCEYQDQETALSAMRNLNGR-EFSGRALRVDNAASEKNKEE 100
Score = 39 (18.8 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 612 EAAASAQRAMHMRWFARRLISAIFMKPEDYEAK 644
EA A RAM R R + A M+ EA+
Sbjct: 451 EARAMEARAMEARAMEARAMEARAMEVRGMEAR 483
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 131 (51.2 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 35/139 (25%), Positives = 70/139 (50%)
Query: 320 YRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDR 378
Y ++EF++ A+A ++G+ ++G+ V V + + Q ++ T + D
Sbjct: 48 YCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSS--QKKDTSSSTVVSTQRSQDH 105
Query: 379 -KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 437
++VG+L +T ++ F PFG + ++ D+ TG+ KG+GFV F A+ A
Sbjct: 106 FHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQ 165
Query: 438 ALNGKLEIVGRTLKVSSVT 456
+ G+ + GR ++ + T
Sbjct: 166 QMGGQW-LGGRQIRTNWAT 183
Score = 124 (48.7 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 31/92 (33%), Positives = 56/92 (60%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 437
+ LYVGNL ++TE + +LF GP + ++ +D T + FV+F + HA AA +
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 64
Query: 438 ALNGKLEIVGRTLKVS-SVTDHVGTQDTAAKS 468
A+NG+ +I+G+ +KV+ + T +DT++ +
Sbjct: 65 AMNGR-KIMGKEVKVNWATTPSSQKKDTSSST 95
Score = 50 (22.7 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMD 255
+T++ + TE + + FS+ G ++ ++IMD
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD 41
Score = 42 (19.8 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 14/57 (24%), Positives = 27/57 (47%)
Query: 580 DVEEECSKYGRVKHIYVDK-----RSAGFVYLRFESTEAAASAQRAMHMRWFARRLI 631
D++ + +GR+ V K +S G+ ++ F + A +A + M +W R I
Sbjct: 121 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 127 (49.8 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
++V NL + E+ L +LF PFG V V++ D T +CKGFGFV + A A ++L
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 440 NGKLEIVGRTLKVSSVTD 457
NG + R L+VS T+
Sbjct: 350 NG-YRLGDRVLQVSFKTN 366
Score = 120 (47.3 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 30/74 (40%), Positives = 42/74 (56%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
L V L NMT+ + R LF G +E +L D TGQ G+GFV + + A+ A + L
Sbjct: 53 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 112
Query: 440 NGKLEIVGRTLKVS 453
NG L + +T+KVS
Sbjct: 113 NG-LRLQTKTIKVS 125
Score = 110 (43.8 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 35/115 (30%), Positives = 57/115 (49%)
Query: 337 LSGQLL-LGQPVMVKPSEAEKNL-------VQSNTSAGGTATGPYGAI-DRKLYVGNLHF 387
++GQ L G + P +AEK + +Q+ T A +I D LYV L
Sbjct: 87 ITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPK 146
Query: 388 NMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK 442
MT+ +L +LF +G + ++ +D TG +G GF++F + A+ A LNG+
Sbjct: 147 TMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 201
Score = 68 (29.0 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 15/60 (25%), Positives = 33/60 (55%)
Query: 206 KKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
K P + RD ++ +P T++++ + FS+ G++ R+++D+ + S+GVG
Sbjct: 123 KVSYARPSSASIRDAN-LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVG 181
Score = 54 (24.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 219 DQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
D +T + +P T+ + F G++ +L+ D+ + +S G G
Sbjct: 48 DSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYG 95
Score = 48 (22.0 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 578 QGDVEEECSKYGRV--KHIYVDKR---SAGFVYLRFESTEAAASAQRAMH 622
Q ++E+ S+YGR+ I VD+ S G ++RF+ A A + ++
Sbjct: 150 QKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 199
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 127 (49.8 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
++V NL + E+ L +LF PFG V V++ D T +CKGFGFV + A A ++L
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 440 NGKLEIVGRTLKVSSVTD 457
NG + R L+VS T+
Sbjct: 350 NG-YRLGDRVLQVSFKTN 366
Score = 120 (47.3 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 30/74 (40%), Positives = 42/74 (56%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
L V L NMT+ + R LF G +E +L D TGQ G+GFV + + A+ A + L
Sbjct: 53 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 112
Query: 440 NGKLEIVGRTLKVS 453
NG L + +T+KVS
Sbjct: 113 NG-LRLQTKTIKVS 125
Score = 110 (43.8 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 35/115 (30%), Positives = 57/115 (49%)
Query: 337 LSGQLL-LGQPVMVKPSEAEKNL-------VQSNTSAGGTATGPYGAI-DRKLYVGNLHF 387
++GQ L G + P +AEK + +Q+ T A +I D LYV L
Sbjct: 87 ITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPK 146
Query: 388 NMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK 442
MT+ +L +LF +G + ++ +D TG +G GF++F + A+ A LNG+
Sbjct: 147 TMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 201
Score = 68 (29.0 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 15/60 (25%), Positives = 33/60 (55%)
Query: 206 KKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
K P + RD ++ +P T++++ + FS+ G++ R+++D+ + S+GVG
Sbjct: 123 KVSYARPSSASIRDAN-LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVG 181
Score = 54 (24.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 219 DQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
D +T + +P T+ + F G++ +L+ D+ + +S G G
Sbjct: 48 DSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYG 95
Score = 48 (22.0 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 578 QGDVEEECSKYGRV--KHIYVDKR---SAGFVYLRFESTEAAASAQRAMH 622
Q ++E+ S+YGR+ I VD+ S G ++RF+ A A + ++
Sbjct: 150 QKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 199
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 127 (49.8 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
++V NL + E+ L +LF PFG V V++ D T +CKGFGFV + A A ++L
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 440 NGKLEIVGRTLKVSSVTD 457
NG + R L+VS T+
Sbjct: 352 NG-YRLGDRVLQVSFKTN 368
Score = 120 (47.3 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 30/74 (40%), Positives = 42/74 (56%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
L V L NMT+ + R LF G +E +L D TGQ G+GFV + + A+ A + L
Sbjct: 41 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 440 NGKLEIVGRTLKVS 453
NG L + +T+KVS
Sbjct: 101 NG-LRLQTKTIKVS 113
Score = 110 (43.8 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 35/115 (30%), Positives = 57/115 (49%)
Query: 337 LSGQLL-LGQPVMVKPSEAEKNL-------VQSNTSAGGTATGPYGAI-DRKLYVGNLHF 387
++GQ L G + P +AEK + +Q+ T A +I D LYV L
Sbjct: 75 ITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPK 134
Query: 388 NMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK 442
MT+ +L +LF +G + ++ +D TG +G GF++F + A+ A LNG+
Sbjct: 135 TMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 68 (29.0 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
Identities = 15/60 (25%), Positives = 33/60 (55%)
Query: 206 KKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
K P + RD ++ +P T++++ + FS+ G++ R+++D+ + S+GVG
Sbjct: 111 KVSYARPSSASIRDAN-LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVG 169
Score = 54 (24.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 219 DQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
D +T + +P T+ + F G++ +L+ D+ + +S G G
Sbjct: 36 DSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYG 83
Score = 48 (22.0 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 578 QGDVEEECSKYGRV--KHIYVDKR---SAGFVYLRFESTEAAASAQRAMH 622
Q ++E+ S+YGR+ I VD+ S G ++RF+ A A + ++
Sbjct: 138 QKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 187
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 127 (49.8 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
++V NL + E+ L +LF PFG V V++ D T +CKGFGFV + A A ++L
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 440 NGKLEIVGRTLKVSSVTD 457
NG + R L+VS T+
Sbjct: 352 NG-YRLGDRVLQVSFKTN 368
Score = 120 (47.3 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 30/74 (40%), Positives = 42/74 (56%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
L V L NMT+ + R LF G +E +L D TGQ G+GFV + + A+ A + L
Sbjct: 41 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 440 NGKLEIVGRTLKVS 453
NG L + +T+KVS
Sbjct: 101 NG-LRLQTKTIKVS 113
Score = 110 (43.8 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 35/115 (30%), Positives = 57/115 (49%)
Query: 337 LSGQLL-LGQPVMVKPSEAEKNL-------VQSNTSAGGTATGPYGAI-DRKLYVGNLHF 387
++GQ L G + P +AEK + +Q+ T A +I D LYV L
Sbjct: 75 ITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPK 134
Query: 388 NMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK 442
MT+ +L +LF +G + ++ +D TG +G GF++F + A+ A LNG+
Sbjct: 135 TMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 68 (29.0 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
Identities = 15/60 (25%), Positives = 33/60 (55%)
Query: 206 KKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
K P + RD ++ +P T++++ + FS+ G++ R+++D+ + S+GVG
Sbjct: 111 KVSYARPSSASIRDAN-LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVG 169
Score = 54 (24.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 219 DQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
D +T + +P T+ + F G++ +L+ D+ + +S G G
Sbjct: 36 DSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYG 83
Score = 48 (22.0 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 578 QGDVEEECSKYGRV--KHIYVDKR---SAGFVYLRFESTEAAASAQRAMH 622
Q ++E+ S+YGR+ I VD+ S G ++RF+ A A + ++
Sbjct: 138 QKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 187
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 131 (51.2 bits), Expect = 6.5e-08, Sum P(3) = 6.5e-08
Identities = 35/139 (25%), Positives = 70/139 (50%)
Query: 320 YRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDR 378
Y ++EF++ A+A ++G+ ++G+ V V + + Q ++ T + D
Sbjct: 44 YCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSS--QKKDTSSSTVVSTQRSQDH 101
Query: 379 -KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 437
++VG+L +T ++ F PFG + ++ D+ TG+ KG+GFV F A+ A
Sbjct: 102 FHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQ 161
Query: 438 ALNGKLEIVGRTLKVSSVT 456
+ G+ + GR ++ + T
Sbjct: 162 QMGGQW-LGGRQIRTNWAT 179
Score = 124 (48.7 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 31/92 (33%), Positives = 56/92 (60%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 437
+ LYVGNL ++TE + +LF GP + ++ +D T + FV+F + HA AA +
Sbjct: 3 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 60
Query: 438 ALNGKLEIVGRTLKVS-SVTDHVGTQDTAAKS 468
A+NG+ +I+G+ +KV+ + T +DT++ +
Sbjct: 61 AMNGR-KIMGKEVKVNWATTPSSQKKDTSSST 91
Score = 99 (39.9 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 37/140 (26%), Positives = 63/140 (45%)
Query: 320 YRYIEFYDVMSVPMAIA-LSGQLLLGQPVMV-----KPSEAEKNLVQSNTS--AGGTATG 371
Y ++ F++ AI + GQ L G+ + KP A K+ +SNT +
Sbjct: 145 YGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP-APKSTYESNTKQLSYDEVVS 203
Query: 372 PYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEH 431
+ +Y G + +TE +R+ F PFG + ++I KG+ F++F+ E
Sbjct: 204 QSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQI------MEIRVFPDKGYSFIRFSSHES 257
Query: 432 AKAAQSALNGKLEIVGRTLK 451
A A ++NG I G +K
Sbjct: 258 AAHAIVSVNGTT-IEGHVVK 276
Score = 67 (28.6 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
+D VF + + T D+ F+ G++ D R++ D + +SKG G
Sbjct: 99 QDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYG 146
Score = 50 (22.7 bits), Expect = 6.5e-08, Sum P(3) = 6.5e-08
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 586 SKYGRVKHIYV--DKRSAGFVYLRFESTEAAASA 617
S +G++ I V DK G+ ++RF S E+AA A
Sbjct: 231 SPFGQIMEIRVFPDK---GYSFIRFSSHESAAHA 261
Score = 50 (22.7 bits), Expect = 6.5e-08, Sum P(3) = 6.5e-08
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMD 255
+T++ + TE + + FS+ G ++ ++IMD
Sbjct: 3 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD 37
Score = 42 (19.8 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 14/57 (24%), Positives = 27/57 (47%)
Query: 580 DVEEECSKYGRVKHIYVDK-----RSAGFVYLRFESTEAAASAQRAMHMRWFARRLI 631
D++ + +GR+ V K +S G+ ++ F + A +A + M +W R I
Sbjct: 117 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 173
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 127 (49.8 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
++V NL + E+ L +LF PFG V V++ D T +CKGFGFV + A A ++L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 440 NGKLEIVGRTLKVSSVTD 457
NG + R L+VS T+
Sbjct: 359 NG-YRLGDRVLQVSFKTN 375
Score = 120 (47.3 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 30/74 (40%), Positives = 42/74 (56%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
L V L NMT+ + R LF G +E +L D TGQ G+GFV + + A+ A + L
Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107
Query: 440 NGKLEIVGRTLKVS 453
NG L + +T+KVS
Sbjct: 108 NG-LRLQTKTIKVS 120
Score = 110 (43.8 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 35/115 (30%), Positives = 57/115 (49%)
Query: 337 LSGQLL-LGQPVMVKPSEAEKNL-------VQSNTSAGGTATGPYGAI-DRKLYVGNLHF 387
++GQ L G + P +AEK + +Q+ T A +I D LYV L
Sbjct: 82 ITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPK 141
Query: 388 NMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK 442
MT+ +L +LF +G + ++ +D TG +G GF++F + A+ A LNG+
Sbjct: 142 TMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196
Score = 68 (29.0 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 15/60 (25%), Positives = 33/60 (55%)
Query: 206 KKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
K P + RD ++ +P T++++ + FS+ G++ R+++D+ + S+GVG
Sbjct: 118 KVSYARPSSASIRDAN-LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVG 176
Score = 54 (24.1 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 219 DQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
D +T + +P T+ + F G++ +L+ D+ + +S G G
Sbjct: 43 DSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYG 90
Score = 48 (22.0 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 578 QGDVEEECSKYGRV--KHIYVDKR---SAGFVYLRFESTEAAASAQRAMH 622
Q ++E+ S+YGR+ I VD+ S G ++RF+ A A + ++
Sbjct: 145 QKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 194
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 127 (49.8 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
++V NL + E+ L +LF PFG V V++ D T +CKGFGFV + A A ++L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 440 NGKLEIVGRTLKVSSVTD 457
NG + R L+VS T+
Sbjct: 359 NG-YRLGDRVLQVSFKTN 375
Score = 120 (47.3 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 30/74 (40%), Positives = 42/74 (56%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
L V L NMT+ + R LF G +E +L D TGQ G+GFV + + A+ A + L
Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107
Query: 440 NGKLEIVGRTLKVS 453
NG L + +T+KVS
Sbjct: 108 NG-LRLQTKTIKVS 120
Score = 110 (43.8 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 35/115 (30%), Positives = 57/115 (49%)
Query: 337 LSGQLL-LGQPVMVKPSEAEKNL-------VQSNTSAGGTATGPYGAI-DRKLYVGNLHF 387
++GQ L G + P +AEK + +Q+ T A +I D LYV L
Sbjct: 82 ITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPK 141
Query: 388 NMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK 442
MT+ +L +LF +G + ++ +D TG +G GF++F + A+ A LNG+
Sbjct: 142 TMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196
Score = 68 (29.0 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 15/60 (25%), Positives = 33/60 (55%)
Query: 206 KKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
K P + RD ++ +P T++++ + FS+ G++ R+++D+ + S+GVG
Sbjct: 118 KVSYARPSSASIRDAN-LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVG 176
Score = 54 (24.1 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 219 DQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
D +T + +P T+ + F G++ +L+ D+ + +S G G
Sbjct: 43 DSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYG 90
Score = 48 (22.0 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 578 QGDVEEECSKYGRV--KHIYVDKR---SAGFVYLRFESTEAAASAQRAMH 622
Q ++E+ S+YGR+ I VD+ S G ++RF+ A A + ++
Sbjct: 145 QKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 194
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 127 (49.8 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
++V NL + E+ L +LF PFG V V++ D T +CKGFGFV + A A ++L
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 386
Query: 440 NGKLEIVGRTLKVSSVTD 457
NG + R L+VS T+
Sbjct: 387 NG-YRLGDRVLQVSFKTN 403
Score = 125 (49.1 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 37/106 (34%), Positives = 54/106 (50%)
Query: 351 PSEAEKNLVQSNTSAGGTATGPYGAID---RKLYVGNLHFNMTETQLRKLFEPFGPVELV 407
P+ A N SN+ + + G+ D L V L NMT+ + R LF G +E
Sbjct: 58 PNSATANGPSSNSRSCPSPMQTGGSNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESC 117
Query: 408 QLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 453
+L D TGQ G+GFV + + A+ A + LNG L + +T+KVS
Sbjct: 118 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG-LRLQTKTIKVS 162
Score = 110 (43.8 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 35/115 (30%), Positives = 57/115 (49%)
Query: 337 LSGQLL-LGQPVMVKPSEAEKNL-------VQSNTSAGGTATGPYGAI-DRKLYVGNLHF 387
++GQ L G + P +AEK + +Q+ T A +I D LYV L
Sbjct: 124 ITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPK 183
Query: 388 NMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK 442
MT+ +L +LF +G + ++ +D TG +G GF++F + A+ A LNG+
Sbjct: 184 TMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNGQ 238
Score = 69 (29.3 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 15/60 (25%), Positives = 33/60 (55%)
Query: 206 KKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
K P + RD ++ +P T++++ + FS+ G++ R+++D+ + S+GVG
Sbjct: 160 KVSYARPSSASIRDAN-LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVG 218
Score = 54 (24.1 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 219 DQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
D +T + +P T+ + F G++ +L+ D+ + +S G G
Sbjct: 85 DSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYG 132
Score = 49 (22.3 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 578 QGDVEEECSKYGRV--KHIYVDK---RSAGFVYLRFESTEAAASAQRAMH 622
Q ++E+ S+YGR+ I VD+ S G ++RF+ A A + ++
Sbjct: 187 QKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLN 236
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 116 (45.9 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 21/56 (37%), Positives = 37/56 (66%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAK 433
+K++VG L+ TE ++R+ F FG +E ++LP+D +T + +GF F+ F + E K
Sbjct: 148 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVK 203
Score = 75 (31.5 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 18/56 (32%), Positives = 32/56 (57%)
Query: 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRD 272
E D +F + +++D+ ++F+K G+V D + M N+ RSKG G I+ +D
Sbjct: 60 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKGFG-FILFKD 114
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 127 (49.8 bits), Expect = 7.0e-08, Sum P(2) = 7.0e-08
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
++V NL + E+ L +LF PFG V V++ D T +CKGFGFV + A A ++L
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 360
Query: 440 NGKLEIVGRTLKVSSVTD 457
NG + R L+VS T+
Sbjct: 361 NG-YRLGDRVLQVSFKTN 377
Score = 120 (47.3 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 30/74 (40%), Positives = 42/74 (56%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
L V L NMT+ + R LF G +E +L D TGQ G+GFV + + A+ A + L
Sbjct: 64 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 123
Query: 440 NGKLEIVGRTLKVS 453
NG L + +T+KVS
Sbjct: 124 NG-LRLQTKTIKVS 136
Score = 110 (43.8 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 35/115 (30%), Positives = 57/115 (49%)
Query: 337 LSGQLL-LGQPVMVKPSEAEKNL-------VQSNTSAGGTATGPYGAI-DRKLYVGNLHF 387
++GQ L G + P +AEK + +Q+ T A +I D LYV L
Sbjct: 98 ITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPK 157
Query: 388 NMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK 442
MT+ +L +LF +G + ++ +D TG +G GF++F + A+ A LNG+
Sbjct: 158 TMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 212
Score = 68 (29.0 bits), Expect = 7.0e-08, Sum P(2) = 7.0e-08
Identities = 15/60 (25%), Positives = 33/60 (55%)
Query: 206 KKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
K P + RD ++ +P T++++ + FS+ G++ R+++D+ + S+GVG
Sbjct: 134 KVSYARPSSASIRDAN-LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVG 192
Score = 54 (24.1 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 219 DQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
D +T + +P T+ + F G++ +L+ D+ + +S G G
Sbjct: 59 DSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYG 106
Score = 48 (22.0 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 578 QGDVEEECSKYGRV--KHIYVDKR---SAGFVYLRFESTEAAASAQRAMH 622
Q ++E+ S+YGR+ I VD+ S G ++RF+ A A + ++
Sbjct: 161 QKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 210
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 143 (55.4 bits), Expect = 7.0e-08, P = 7.0e-08
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
KL+VG L F+ E L ++F +G + V + D ET + +GFGFV F ++ AK A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 439 LNGKLEIVGRTLKV 452
+NGK + GR ++V
Sbjct: 67 MNGK-SVDGRQIRV 79
>UNIPROTKB|E9PK21 [details] [associations]
symbol:PPIE "Peptidyl-prolyl cis-trans isomerase E"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AL035404 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL033527 EMBL:AL049824 HGNC:HGNC:9258
ChiTaRS:PPIE IPI:IPI00985437 ProteinModelPortal:E9PK21 SMR:E9PK21
Ensembl:ENST00000470213 ArrayExpress:E9PK21 Bgee:E9PK21
Uniprot:E9PK21
Length = 208
Score = 142 (55.0 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 32/76 (42%), Positives = 46/76 (60%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 437
R LYVG L + + L F PFG + +Q+PLD ET + +GF FV+F E A AA
Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65
Query: 438 ALNGKLEIVGRTLKVS 453
+N + E+ GRT++V+
Sbjct: 66 NMN-ESELFGRTIRVN 80
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 127 (49.8 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
++V NL + E+ L +LF PFG V V++ D T +CKGFGFV + A A ++L
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 362
Query: 440 NGKLEIVGRTLKVSSVTD 457
NG + R L+VS T+
Sbjct: 363 NG-YRLGDRVLQVSFKTN 379
Score = 122 (48.0 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 43/122 (35%), Positives = 61/122 (50%)
Query: 344 GQPVMVKPSEAE-KNLVQSNTSAGGTATG-----PY--GAI--DRK--LYVGNLHFNMTE 391
G +++ E + N SNTS G ++ P GA D K L V L NMT+
Sbjct: 4 GLKIIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQ 63
Query: 392 TQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLK 451
+ R LF G +E +L D TGQ G+GFV + + A+ A + LNG L + +T+K
Sbjct: 64 EEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG-LRLQTKTIK 122
Query: 452 VS 453
VS
Sbjct: 123 VS 124
Score = 110 (43.8 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 35/115 (30%), Positives = 57/115 (49%)
Query: 337 LSGQLL-LGQPVMVKPSEAEKNL-------VQSNTSAGGTATGPYGAI-DRKLYVGNLHF 387
++GQ L G + P +AEK + +Q+ T A +I D LYV L
Sbjct: 86 ITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPK 145
Query: 388 NMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK 442
MT+ +L +LF +G + ++ +D TG +G GF++F + A+ A LNG+
Sbjct: 146 TMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 200
Score = 68 (29.0 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 15/60 (25%), Positives = 33/60 (55%)
Query: 206 KKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
K P + RD ++ +P T++++ + FS+ G++ R+++D+ + S+GVG
Sbjct: 122 KVSYARPSSASIRDAN-LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVG 180
Score = 54 (24.1 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 219 DQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
D +T + +P T+ + F G++ +L+ D+ + +S G G
Sbjct: 47 DSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYG 94
Score = 48 (22.0 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 578 QGDVEEECSKYGRV--KHIYVDKR---SAGFVYLRFESTEAAASAQRAMH 622
Q ++E+ S+YGR+ I VD+ S G ++RF+ A A + ++
Sbjct: 149 QKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 198
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 127 (49.8 bits), Expect = 7.2e-08, Sum P(2) = 7.2e-08
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
++V NL + E+ L +LF PFG V V++ D T +CKGFGFV + A A ++L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 440 NGKLEIVGRTLKVSSVTD 457
NG + R L+VS T+
Sbjct: 364 NG-YRLGDRVLQVSFKTN 380
Score = 120 (47.3 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 30/74 (40%), Positives = 42/74 (56%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
L V L NMT+ + R LF G +E +L D TGQ G+GFV + + A+ A + L
Sbjct: 53 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 112
Query: 440 NGKLEIVGRTLKVS 453
NG L + +T+KVS
Sbjct: 113 NG-LRLQTKTIKVS 125
Score = 110 (43.8 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 35/115 (30%), Positives = 57/115 (49%)
Query: 337 LSGQLL-LGQPVMVKPSEAEKNL-------VQSNTSAGGTATGPYGAI-DRKLYVGNLHF 387
++GQ L G + P +AEK + +Q+ T A +I D LYV L
Sbjct: 87 ITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPK 146
Query: 388 NMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK 442
MT+ +L +LF +G + ++ +D TG +G GF++F + A+ A LNG+
Sbjct: 147 TMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 201
Score = 68 (29.0 bits), Expect = 7.2e-08, Sum P(2) = 7.2e-08
Identities = 15/60 (25%), Positives = 33/60 (55%)
Query: 206 KKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
K P + RD ++ +P T++++ + FS+ G++ R+++D+ + S+GVG
Sbjct: 123 KVSYARPSSASIRDAN-LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVG 181
Score = 54 (24.1 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 219 DQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
D +T + +P T+ + F G++ +L+ D+ + +S G G
Sbjct: 48 DSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYG 95
Score = 48 (22.0 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 578 QGDVEEECSKYGRV--KHIYVDKR---SAGFVYLRFESTEAAASAQRAMH 622
Q ++E+ S+YGR+ I VD+ S G ++RF+ A A + ++
Sbjct: 150 QKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 199
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 127 (49.8 bits), Expect = 7.2e-08, Sum P(2) = 7.2e-08
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
++V NL + E+ L +LF PFG V V++ D T +CKGFGFV + A A ++L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 440 NGKLEIVGRTLKVSSVTD 457
NG + R L+VS T+
Sbjct: 364 NG-YRLGDRVLQVSFKTN 380
Score = 120 (47.3 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 30/74 (40%), Positives = 42/74 (56%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
L V L NMT+ + R LF G +E +L D TGQ G+GFV + + A+ A + L
Sbjct: 53 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 112
Query: 440 NGKLEIVGRTLKVS 453
NG L + +T+KVS
Sbjct: 113 NG-LRLQTKTIKVS 125
Score = 110 (43.8 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 35/115 (30%), Positives = 57/115 (49%)
Query: 337 LSGQLL-LGQPVMVKPSEAEKNL-------VQSNTSAGGTATGPYGAI-DRKLYVGNLHF 387
++GQ L G + P +AEK + +Q+ T A +I D LYV L
Sbjct: 87 ITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPK 146
Query: 388 NMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK 442
MT+ +L +LF +G + ++ +D TG +G GF++F + A+ A LNG+
Sbjct: 147 TMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 201
Score = 68 (29.0 bits), Expect = 7.2e-08, Sum P(2) = 7.2e-08
Identities = 15/60 (25%), Positives = 33/60 (55%)
Query: 206 KKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
K P + RD ++ +P T++++ + FS+ G++ R+++D+ + S+GVG
Sbjct: 123 KVSYARPSSASIRDAN-LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVG 181
Score = 54 (24.1 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 219 DQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
D +T + +P T+ + F G++ +L+ D+ + +S G G
Sbjct: 48 DSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYG 95
Score = 48 (22.0 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 578 QGDVEEECSKYGRV--KHIYVDKR---SAGFVYLRFESTEAAASAQRAMH 622
Q ++E+ S+YGR+ I VD+ S G ++RF+ A A + ++
Sbjct: 150 QKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 199
>MGI|MGI:1330294 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
replication origin binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
GermOnline:ENSMUSG00000020358 Uniprot:Q99020
Length = 285
Score = 110 (43.8 bits), Expect = 7.2e-08, Sum P(2) = 7.2e-08
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 352 SEAEKNLVQSNTSAGGTATGPYGAI----D--RKLYVGNLHFNMTETQLRKLFEPFGPVE 405
S EK L Q G P A+ D +K++VG L+ TE ++R+ F FG +E
Sbjct: 127 SSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGEIE 186
Query: 406 LVQLPLDIETGQCKGFGFVQFAQLEHAK 433
++LP+D + + +GF F+ F + + K
Sbjct: 187 AIELPIDPKLNKRRGFVFITFKEEDPVK 214
Score = 82 (33.9 bits), Expect = 7.2e-08, Sum P(2) = 7.2e-08
Identities = 18/59 (30%), Positives = 34/59 (57%)
Query: 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGN 275
E D +F + +++D+ ++F+K G+V D + MD N+ RS+G G I+ +D +
Sbjct: 71 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFG-FILFKDSSS 128
>UNIPROTKB|Q9QX80 [details] [associations]
symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
Genevestigator:Q9QX80 Uniprot:Q9QX80
Length = 285
Score = 110 (43.8 bits), Expect = 7.2e-08, Sum P(2) = 7.2e-08
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 352 SEAEKNLVQSNTSAGGTATGPYGAI----D--RKLYVGNLHFNMTETQLRKLFEPFGPVE 405
S EK L Q G P A+ D +K++VG L+ TE ++R+ F FG +E
Sbjct: 127 SSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGEIE 186
Query: 406 LVQLPLDIETGQCKGFGFVQFAQLEHAK 433
++LP+D + + +GF F+ F + + K
Sbjct: 187 AIELPIDPKLNKRRGFVFITFKEEDPVK 214
Score = 82 (33.9 bits), Expect = 7.2e-08, Sum P(2) = 7.2e-08
Identities = 18/59 (30%), Positives = 34/59 (57%)
Query: 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGN 275
E D +F + +++D+ ++F+K G+V D + MD N+ RS+G G I+ +D +
Sbjct: 71 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFG-FILFKDSSS 128
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 131 (51.2 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 28/79 (35%), Positives = 47/79 (59%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
KL++G L ++ T+ LR+ F +G +E + D +T + +GFGFV+FA A AA A
Sbjct: 3 KLFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGA 62
Query: 439 LNGKLEIVGRTLKVSSVTD 457
+N + E GR ++V ++
Sbjct: 63 MNNQ-EFDGRIIRVDKASE 80
>UNIPROTKB|I3LH22 [details] [associations]
symbol:LOC100514264 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU915617
Ensembl:ENSSSCT00000023009 OMA:QALEDHI Uniprot:I3LH22
Length = 161
Score = 131 (51.2 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 31/82 (37%), Positives = 43/82 (52%)
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
KL+VG L+FN + L F P+ V + D ET + +GFGF+ F EHA A
Sbjct: 7 KLFVGGLNFNSDKQALEDHISSFRPISEVVIVKDRETQRSRGFGFITFTNPEHASNVMRA 66
Query: 439 LNGKLEIVGRTLKVSSVTDHVG 460
+NG+ + GR + V DH G
Sbjct: 67 MNGE-SLDGRQIHV----DHAG 83
>UNIPROTKB|Q74DJ2 [details] [associations]
symbol:GSU1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 131 (51.2 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 437
++LYVG++ + TE LR+LF G V V + D ETG+ KG G+V+ E AK A
Sbjct: 3 KELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIE 62
Query: 438 ALNGKLEIVGRTLKVS 453
L+G L + R + VS
Sbjct: 63 TLDGAL-LRNRVITVS 77
>TIGR_CMR|GSU_1324 [details] [associations]
symbol:GSU_1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 131 (51.2 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 437
++LYVG++ + TE LR+LF G V V + D ETG+ KG G+V+ E AK A
Sbjct: 3 KELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIE 62
Query: 438 ALNGKLEIVGRTLKVS 453
L+G L + R + VS
Sbjct: 63 TLDGAL-LRNRVITVS 77
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 131 (51.2 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 30/77 (38%), Positives = 46/77 (59%)
Query: 376 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAA 435
I +L+V L T+ LR+LF PFG ++ +L D ET + KGFGF+ F + A+ A
Sbjct: 5 ISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKA 64
Query: 436 QSALNGKLEIVGRTLKV 452
+L+GK+ + GR + V
Sbjct: 65 LKSLDGKI-VDGRLIFV 80
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 117 (46.2 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 21/56 (37%), Positives = 37/56 (66%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAK 433
+K++VG L+ E Q+R+ FE FG +E ++LP+D +T + +GF F+ F + + K
Sbjct: 148 KKIFVGGLNPEAGEDQIREYFETFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVK 203
Score = 76 (31.8 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 15/40 (37%), Positives = 28/40 (70%)
Query: 233 TERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRD 272
+++D+ ++F+K G+V D + MD N+ RS+G G I+ +D
Sbjct: 76 SKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFG-FILFKD 114
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 122 (48.0 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 30/74 (40%), Positives = 41/74 (55%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
L V L NMT+ +LR LF G VE +L D G G+GFV + + A+ A + L
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 440 NGKLEIVGRTLKVS 453
NG L + +T+KVS
Sbjct: 82 NG-LRLQSKTIKVS 94
Score = 118 (46.6 bits), Expect = 7.9e-08, Sum P(2) = 7.9e-08
Identities = 29/78 (37%), Positives = 44/78 (56%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
+++ NL + E L ++F PFG V V++ D T +CKGFGFV E A A ++L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 440 NGKLEIVGRTLKVSSVTD 457
NG + + L+VS T+
Sbjct: 306 NG-YRLGDKILQVSFKTN 322
Score = 95 (38.5 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 436
D LY+ L NMT+ + +F FG + ++ +D TG +G F++F + A+ A
Sbjct: 105 DANLYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164
Query: 437 SALNG 441
++ NG
Sbjct: 165 TSFNG 169
Score = 75 (31.5 bits), Expect = 7.9e-08, Sum P(2) = 7.9e-08
Identities = 15/59 (25%), Positives = 34/59 (57%)
Query: 206 KKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 264
K P ++ +D ++ +P T++DV + FS+ G++ + R+++D+ + S+GV
Sbjct: 92 KVSYARPSSEVIKDAN-LYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGV 149
Score = 62 (26.9 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 228 MPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG--NAIMMRDDG---NTLHSCLI 282
+P T+ ++ FS G+V +LI D+ + S G G N + +D NTL+ +
Sbjct: 27 LPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL 86
Query: 283 NS 284
S
Sbjct: 87 QS 88
Score = 58 (25.5 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 578 QGDVEEECSKYGRV--KHIYVDKR---SAGFVYLRFESTEAAASA 617
Q DVE+ S++GR+ + VD+ S G ++RF+ A A
Sbjct: 119 QKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEA 163
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 122 (48.0 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 30/74 (40%), Positives = 41/74 (55%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
L V L NMT+ +LR LF G VE +L D G G+GFV + + A+ A + L
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 440 NGKLEIVGRTLKVS 453
NG L + +T+KVS
Sbjct: 82 NG-LRLQSKTIKVS 94
Score = 118 (46.6 bits), Expect = 7.9e-08, Sum P(2) = 7.9e-08
Identities = 29/78 (37%), Positives = 44/78 (56%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
+++ NL + E L ++F PFG V V++ D T +CKGFGFV E A A ++L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 440 NGKLEIVGRTLKVSSVTD 457
NG + + L+VS T+
Sbjct: 306 NG-YRLGDKILQVSFKTN 322
Score = 75 (31.5 bits), Expect = 7.9e-08, Sum P(2) = 7.9e-08
Identities = 15/59 (25%), Positives = 34/59 (57%)
Query: 206 KKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 264
K P ++ +D ++ +P T++DV + FS+ G++ + R+++D+ + S+GV
Sbjct: 92 KVSYARPSSEVIKDAN-LYISGLPRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGV 149
Score = 62 (26.9 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 228 MPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG--NAIMMRDDG---NTLHSCLI 282
+P T+ ++ FS G+V +LI D+ + S G G N + +D NTL+ +
Sbjct: 27 LPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL 86
Query: 283 NS 284
S
Sbjct: 87 QS 88
Score = 58 (25.5 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 578 QGDVEEECSKYGRV--KHIYVDKR---SAGFVYLRFESTEAAASA 617
Q DVE+ S++GR+ + VD+ S G ++RF+ A A
Sbjct: 119 QKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEA 163
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 110 (43.8 bits), Expect = 8.4e-08, Sum P(2) = 8.4e-08
Identities = 20/56 (35%), Positives = 36/56 (64%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAK 433
+K++VG L+ TE ++R+ F FG +E ++LP+D + + +GF F+ F + E K
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVK 209
Score = 81 (33.6 bits), Expect = 8.4e-08, Sum P(2) = 8.4e-08
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRD 272
E D +F + +++D+ ++F+K G+V D + MD N+ RS+G G I+ +D
Sbjct: 66 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFG-FILFKD 120
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 131 (51.2 bits), Expect = 8.6e-08, Sum P(3) = 8.6e-08
Identities = 35/139 (25%), Positives = 70/139 (50%)
Query: 320 YRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDR 378
Y ++EF++ A+A ++G+ ++G+ V V + + Q ++ T + D
Sbjct: 48 YCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSS--QKKDTSSSTVVSTQRSQDH 105
Query: 379 -KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 437
++VG+L +T ++ F PFG + ++ D+ TG+ KG+GFV F A+ A
Sbjct: 106 FHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQ 165
Query: 438 ALNGKLEIVGRTLKVSSVT 456
+ G+ + GR ++ + T
Sbjct: 166 QMGGQW-LGGRQIRTNWAT 183
Score = 124 (48.7 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 31/92 (33%), Positives = 56/92 (60%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 437
+ LYVGNL ++TE + +LF GP + ++ +D T + FV+F + HA AA +
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 64
Query: 438 ALNGKLEIVGRTLKVS-SVTDHVGTQDTAAKS 468
A+NG+ +I+G+ +KV+ + T +DT++ +
Sbjct: 65 AMNGR-KIMGKEVKVNWATTPSSQKKDTSSST 95
Score = 99 (39.9 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 38/140 (27%), Positives = 62/140 (44%)
Query: 320 YRYIEFYDVMSVPMAIA-LSGQLLLGQPVMV-----KPSEAEKNLVQSNTS--AGGTATG 371
Y ++ F++ AI + GQ L G+ + KP A K+ +SNT +
Sbjct: 149 YGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP-APKSTYESNTKQLSYDEVVN 207
Query: 372 PYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEH 431
+ +Y G + +TE +R+ F PFG + ++I KG+ FV+F E
Sbjct: 208 QSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQI------MEIRVFPDKGYSFVRFNSHES 261
Query: 432 AKAAQSALNGKLEIVGRTLK 451
A A ++NG I G +K
Sbjct: 262 AAHAIVSVNGTT-IEGHVVK 280
Score = 67 (28.6 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
+D VF + + T D+ F+ G++ D R++ D + +SKG G
Sbjct: 103 QDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYG 150
Score = 50 (22.7 bits), Expect = 8.6e-08, Sum P(3) = 8.6e-08
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMD 255
+T++ + TE + + FS+ G ++ ++IMD
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD 41
Score = 49 (22.3 bits), Expect = 8.6e-08, Sum P(3) = 8.6e-08
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 586 SKYGRVKHIYV--DKRSAGFVYLRFESTEAAASA 617
S +G++ I V DK G+ ++RF S E+AA A
Sbjct: 235 SPFGQIMEIRVFPDK---GYSFVRFNSHESAAHA 265
Score = 42 (19.8 bits), Expect = 7.1e-05, Sum P(2) = 7.1e-05
Identities = 14/57 (24%), Positives = 27/57 (47%)
Query: 580 DVEEECSKYGRVKHIYVDK-----RSAGFVYLRFESTEAAASAQRAMHMRWFARRLI 631
D++ + +GR+ V K +S G+ ++ F + A +A + M +W R I
Sbjct: 121 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177
>RGD|69255 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
Uniprot:Q9Z0U8
Length = 298
Score = 110 (43.8 bits), Expect = 8.6e-08, Sum P(2) = 8.6e-08
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 352 SEAEKNLVQSNTSAGGTATGPYGAI----D--RKLYVGNLHFNMTETQLRKLFEPFGPVE 405
S EK L Q G P A+ D +K++VG L+ TE ++R+ F FG +E
Sbjct: 140 SSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGEIE 199
Query: 406 LVQLPLDIETGQCKGFGFVQFAQLEHAK 433
++LP+D + + +GF F+ F + + K
Sbjct: 200 AIELPIDPKLNKRRGFVFITFKEEDPVK 227
Score = 82 (33.9 bits), Expect = 8.6e-08, Sum P(2) = 8.6e-08
Identities = 18/59 (30%), Positives = 34/59 (57%)
Query: 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGN 275
E D +F + +++D+ ++F+K G+V D + MD N+ RS+G G I+ +D +
Sbjct: 84 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFG-FILFKDSSS 141
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 131 (51.2 bits), Expect = 8.7e-08, Sum P(3) = 8.7e-08
Identities = 35/139 (25%), Positives = 70/139 (50%)
Query: 320 YRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDR 378
Y ++EF++ A+A ++G+ ++G+ V V + + Q ++ T + D
Sbjct: 48 YCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSS--QKKDTSSSTVVSTQRSQDH 105
Query: 379 -KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 437
++VG+L +T ++ F PFG + ++ D+ TG+ KG+GFV F A+ A
Sbjct: 106 FHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQ 165
Query: 438 ALNGKLEIVGRTLKVSSVT 456
+ G+ + GR ++ + T
Sbjct: 166 QMGGQW-LGGRQIRTNWAT 183
Score = 124 (48.7 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 31/92 (33%), Positives = 56/92 (60%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 437
+ LYVGNL ++TE + +LF GP + ++ +D T + FV+F + HA AA +
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 64
Query: 438 ALNGKLEIVGRTLKVS-SVTDHVGTQDTAAKS 468
A+NG+ +I+G+ +KV+ + T +DT++ +
Sbjct: 65 AMNGR-KIMGKEVKVNWATTPSSQKKDTSSST 95
Score = 101 (40.6 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 38/140 (27%), Positives = 63/140 (45%)
Query: 320 YRYIEFYDVMSVPMAIA-LSGQLLLGQPVMV-----KPSEAEKNLVQSNTS--AGGTATG 371
Y ++ F++ AI + GQ L G+ + KP A K+ +SNT +
Sbjct: 149 YGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP-APKSTYESNTKQLSYDEVVS 207
Query: 372 PYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEH 431
+ +Y G + +TE +R+ F PFG + ++I KG+ FV+F+ E
Sbjct: 208 QSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQI------MEIRVFPDKGYSFVRFSSHES 261
Query: 432 AKAAQSALNGKLEIVGRTLK 451
A A ++NG I G +K
Sbjct: 262 AAHAIVSVNGTT-IEGHVVK 280
Score = 67 (28.6 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
+D VF + + T D+ F+ G++ D R++ D + +SKG G
Sbjct: 103 QDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYG 150
Score = 50 (22.7 bits), Expect = 8.7e-08, Sum P(3) = 8.7e-08
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMD 255
+T++ + TE + + FS+ G ++ ++IMD
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD 41
Score = 49 (22.3 bits), Expect = 8.7e-08, Sum P(3) = 8.7e-08
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 586 SKYGRVKHIYV--DKRSAGFVYLRFESTEAAASA 617
S +G++ I V DK G+ ++RF S E+AA A
Sbjct: 235 SPFGQIMEIRVFPDK---GYSFVRFSSHESAAHA 265
Score = 42 (19.8 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
Identities = 14/57 (24%), Positives = 27/57 (47%)
Query: 580 DVEEECSKYGRVKHIYVDK-----RSAGFVYLRFESTEAAASAQRAMHMRWFARRLI 631
D++ + +GR+ V K +S G+ ++ F + A +A + M +W R I
Sbjct: 121 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 131 (51.2 bits), Expect = 8.7e-08, Sum P(3) = 8.7e-08
Identities = 35/139 (25%), Positives = 70/139 (50%)
Query: 320 YRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDR 378
Y ++EF++ A+A ++G+ ++G+ V V + + Q ++ T + D
Sbjct: 48 YCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSS--QKKDTSSSTVVSTQRSQDH 105
Query: 379 -KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 437
++VG+L +T ++ F PFG + ++ D+ TG+ KG+GFV F A+ A
Sbjct: 106 FHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQ 165
Query: 438 ALNGKLEIVGRTLKVSSVT 456
+ G+ + GR ++ + T
Sbjct: 166 QMGGQW-LGGRQIRTNWAT 183
Score = 124 (48.7 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 31/92 (33%), Positives = 56/92 (60%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 437
+ LYVGNL ++TE + +LF GP + ++ +D T + FV+F + HA AA +
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 64
Query: 438 ALNGKLEIVGRTLKVS-SVTDHVGTQDTAAKS 468
A+NG+ +I+G+ +KV+ + T +DT++ +
Sbjct: 65 AMNGR-KIMGKEVKVNWATTPSSQKKDTSSST 95
Score = 99 (39.9 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 38/140 (27%), Positives = 62/140 (44%)
Query: 320 YRYIEFYDVMSVPMAIA-LSGQLLLGQPVMV-----KPSEAEKNLVQSNTS--AGGTATG 371
Y ++ F++ AI + GQ L G+ + KP A K+ +SNT +
Sbjct: 149 YGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP-APKSTYESNTKQLSYDEVVN 207
Query: 372 PYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEH 431
+ +Y G + +TE +R+ F PFG + ++I KG+ FV+F E
Sbjct: 208 QSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQI------MEIRVFPDKGYSFVRFNSHES 261
Query: 432 AKAAQSALNGKLEIVGRTLK 451
A A ++NG I G +K
Sbjct: 262 AAHAIVSVNGTT-IEGHVVK 280
Score = 67 (28.6 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
+D VF + + T D+ F+ G++ D R++ D + +SKG G
Sbjct: 103 QDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYG 150
Score = 50 (22.7 bits), Expect = 8.7e-08, Sum P(3) = 8.7e-08
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMD 255
+T++ + TE + + FS+ G ++ ++IMD
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD 41
Score = 49 (22.3 bits), Expect = 8.7e-08, Sum P(3) = 8.7e-08
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 586 SKYGRVKHIYV--DKRSAGFVYLRFESTEAAASA 617
S +G++ I V DK G+ ++RF S E+AA A
Sbjct: 235 SPFGQIMEIRVFPDK---GYSFVRFNSHESAAHA 265
Score = 42 (19.8 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
Identities = 14/57 (24%), Positives = 27/57 (47%)
Query: 580 DVEEECSKYGRVKHIYVDK-----RSAGFVYLRFESTEAAASAQRAMHMRWFARRLI 631
D++ + +GR+ V K +S G+ ++ F + A +A + M +W R I
Sbjct: 121 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177
>DICTYBASE|DDB_G0286395 [details] [associations]
symbol:u2af2 "U2 snRNP auxiliary factor large
subunit" species:44689 "Dictyostelium discoideum" [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008187 "poly-pyrimidine tract binding"
evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0286395 GenomeReviews:CM000153_GR
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AAFI02000085 GO:GO:0000398
GO:GO:0005686 GO:GO:0008187 eggNOG:NOG298004 KO:K12837
TIGRFAMs:TIGR01642 RefSeq:XP_637725.1 ProteinModelPortal:Q54LV5
SMR:Q54LV5 EnsemblProtists:DDB0233353 GeneID:8625590
KEGG:ddi:DDB_G0286395 InParanoid:Q54LV5 OMA:DELMDND Uniprot:Q54LV5
Length = 671
Score = 158 (60.7 bits), Expect = 8.7e-08, Sum P(2) = 8.7e-08
Identities = 75/288 (26%), Positives = 121/288 (42%)
Query: 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 436
+ K+YVG L N++E Q++ L +G ++ L D TG KGF F ++ E A
Sbjct: 377 ENKIYVGGLPSNLSEEQVKSLLSAYGKLKAFNLVKDTNTGVSKGFAFCEYQDSEVTDVAC 436
Query: 437 SALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSAXXXXXXXXXL----ALNAQSRALLMQK 492
S LNG + + +TL V + A+K + + S ++++
Sbjct: 437 SKLNG-IPLADKTLVVQRASIGSKPPGDASKGGDVTQQQHQQQQQQQSTSNGSGSMVLPH 495
Query: 493 LDRTGIATSI-----AG--SL--GVAPAVNGSA-VN---QQAISLXXXXXXXXXXXXXXX 539
L TG +S+ G SL GV P + G +N Q +S+
Sbjct: 496 L--TGANSSLMEDQGGGGDSLPNGVDPTIAGLLNLNIPVAQTLSIIRTNLLNSSVSGGGG 553
Query: 540 XXXXNMAAEFIGSPSECLLLKNMFDPA-METDPDFDLEIQGDVEEECSKYGRVKHIYVDK 598
+ + PS + + N+ D + D ++D I DV+EEC ++G V+ I++
Sbjct: 554 TTNGTITPDNNTKPSCVIQILNLVDREDIFDDKEYD-NILIDVKEECEQFGEVQSIWLPL 612
Query: 599 RSAG-----FVYLRFESTEAAASAQRAMHMRWF-ARRLISAIFMKPED 640
S VY+ F E A A A+ R + R L SA + PED
Sbjct: 613 PSKNPLEVTRVYVEFSQVEFAQKACLALGGRKYNGRVLFSAYY--PED 658
Score = 123 (48.4 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 39/140 (27%), Positives = 63/140 (45%)
Query: 320 YRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTAT-----GPYG 374
+ +IEF A+ G L + ++ K+ ++ + GG A+ P
Sbjct: 316 FAFIEFRSPEEATNAMRFDGISLKNFTLKIR---RPKDYQSTSDNTGGNASLLPSIVPTN 372
Query: 375 AID--RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 432
D K+YVG L N++E Q++ L +G ++ L D TG KGF F ++ E
Sbjct: 373 VPDSENKIYVGGLPSNLSEEQVKSLLSAYGKLKAFNLVKDTNTGVSKGFAFCEYQDSEVT 432
Query: 433 KAAQSALNGKLEIVGRTLKV 452
A S LNG + + +TL V
Sbjct: 433 DVACSKLNG-IPLADKTLVV 451
Score = 41 (19.5 bits), Expect = 8.7e-08, Sum P(2) = 8.7e-08
Identities = 7/41 (17%), Positives = 22/41 (53%)
Query: 204 KEKKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKA 244
+++++ E ++ R ++ +P ++ ++ EFF+ A
Sbjct: 251 QQQQQQNNQETPQKKQSRRIYVGNIPPGISDSELMEFFNAA 291
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 110 (43.8 bits), Expect = 8.8e-08, Sum P(2) = 8.8e-08
Identities = 20/56 (35%), Positives = 36/56 (64%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAK 433
+K++VG L+ TE ++R+ F FG +E ++LP+D + + +GF F+ F + E K
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVK 209
Score = 81 (33.6 bits), Expect = 8.8e-08, Sum P(2) = 8.8e-08
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRD 272
E D +F + +++D+ ++F+K G+V D + MD N+ RS+G G I+ +D
Sbjct: 66 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFG-FILFKD 120
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 129 (50.5 bits), Expect = 8.9e-08, Sum P(3) = 8.9e-08
Identities = 30/73 (41%), Positives = 43/73 (58%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
+YV NL +M E L+ LF FG + V++ D GQ +GFGF+ F + E A+ A +
Sbjct: 193 IYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRD-SNGQSRGFGFINFEKHEEAQKAVDHM 251
Query: 440 NGKLEIVGRTLKV 452
NGK E+ G+ L V
Sbjct: 252 NGK-EVSGQLLYV 263
Score = 114 (45.2 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 24/83 (28%), Positives = 47/83 (56%)
Query: 370 TGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQL 429
T +G LYVG+LH ++TE L ++F P G + +++ D+ T + G+ ++ F Q
Sbjct: 3 TRGHGCSLSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 430 EHAKAAQSALNGKLEIVGRTLKV 452
A+ A +N ++ I G+ +++
Sbjct: 63 ADAERALDTMNFEM-IKGQPIRI 84
Score = 103 (41.3 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 34/112 (30%), Positives = 58/112 (51%)
Query: 337 LSGQLL-LGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLR 395
+SGQLL +G+ K +E + L + Y ++ LYV NL ++ + +L+
Sbjct: 256 VSGQLLYVGRAQ--KRAERQNELKRRFEQMKQERQNRYQGVN--LYVKNLDDSINDDRLK 311
Query: 396 KLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG 447
++F +G + ++ E+ KGFGFV F+ E A A + +NG+ IVG
Sbjct: 312 EVFSTYGVITSAKVMT--ESSHSKGFGFVCFSSPEEATKAVTEMNGR--IVG 359
Score = 60 (26.2 bits), Expect = 8.9e-08, Sum P(3) = 8.9e-08
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 233 TERDVYEFFSKAGKVRDVRLIMDRNSRRSKG 263
TE +YE FS G + +R+ D +RRS G
Sbjct: 23 TEAMLYEMFSPIGTILSIRVCRDVATRRSLG 53
Score = 56 (24.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 19/63 (30%), Positives = 31/63 (49%)
Query: 586 SKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMH-MRWFARRLISAIFMKPEDY 641
S +G + K +Y + S GF ++ FE+ EAA A M+ M R++ F +
Sbjct: 120 STFGSILSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKR 179
Query: 642 EAK 644
EA+
Sbjct: 180 EAE 182
Score = 53 (23.7 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 17/55 (30%), Positives = 33/55 (60%)
Query: 574 DLEIQGDVEEECSKYGRVKHIYVDK----RSAGFVYLRFESTEAAASAQRAM-HM 623
D++ QG +++ S++G+ + + V + +S GF ++ FE E AQ+A+ HM
Sbjct: 201 DMDEQG-LQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHE---EAQKAVDHM 251
Score = 50 (22.7 bits), Expect = 8.9e-08, Sum P(3) = 8.9e-08
Identities = 22/77 (28%), Positives = 34/77 (44%)
Query: 572 DFDLEIQGD-VEEECSKYGRVKHIYV---DKRSAGFVYLRFESTEAAASAQRAMHMRWFA 627
+ D I D ++E S YG + V S GF ++ F S E A A M+ R
Sbjct: 300 NLDDSINDDRLKEVFSTYGVITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Query: 628 RR-LISAIFMKPEDYEA 643
+ L A+ + E+ +A
Sbjct: 360 TKPLYVALAQRKEERKA 376
>UNIPROTKB|F1LWZ8 [details] [associations]
symbol:Lemd3 "Protein Lemd3" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005639 "integral to nuclear inner membrane" evidence=IEA]
[GO:0030512 "negative regulation of transforming growth factor beta
receptor signaling pathway" evidence=IEA] [GO:0030514 "negative
regulation of BMP signaling pathway" evidence=IEA] [GO:0032926
"negative regulation of activin receptor signaling pathway"
evidence=IEA] [GO:0035914 "skeletal muscle cell differentiation"
evidence=IEA] [GO:0051726 "regulation of cell cycle" evidence=IEA]
InterPro:IPR012677 InterPro:IPR018996 Pfam:PF09402 RGD:1596822
INTERPRO:IPR003887 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.720.40 InterPro:IPR011015 Pfam:PF03020 SUPFAM:SSF63451
PROSITE:PS50954 SMART:SM00540 GO:GO:0005639
GeneTree:ENSGT00530000063791 IPI:IPI00388697 PRIDE:F1LWZ8
Ensembl:ENSRNOT00000039532 Uniprot:F1LWZ8
Length = 902
Score = 156 (60.0 bits), Expect = 9.8e-08, P = 9.8e-08
Identities = 34/95 (35%), Positives = 54/95 (56%)
Query: 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFES 610
S + CL ++NMFDP ME + L IQ + E+CS + HI VD+ S G VY++ S
Sbjct: 772 SLTPCLKIRNMFDPVMEIGDHWHLAIQEAILEKCSDNDGIVHIAVDRNSREGCVYVKCLS 831
Query: 611 TEAAASAQRAMHMRWFARRLISAIFMKPEDYEAKF 645
A A +A+H WF +L++ +++ + Y +F
Sbjct: 832 PGHAGKAFKALHGSWFDGKLVTVKYLRLDRYHHRF 866
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 125 (49.1 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
Identities = 33/81 (40%), Positives = 44/81 (54%)
Query: 374 GAIDR-KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 432
G I R L V L NMT+ +LR LF G VE +L D G G+GFV + + A
Sbjct: 15 GDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDA 74
Query: 433 KAAQSALNGKLEIVGRTLKVS 453
+ A + LNG L + +T+KVS
Sbjct: 75 ERAINTLNG-LRLQSKTIKVS 94
Score = 118 (46.6 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 29/78 (37%), Positives = 44/78 (56%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
+++ NL + E L ++F PFG V V++ D T +CKGFGFV E A A ++L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 440 NGKLEIVGRTLKVSSVTD 457
NG + + L+VS T+
Sbjct: 306 NG-YRLGDKILQVSFKTN 322
Score = 74 (31.1 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 15/59 (25%), Positives = 34/59 (57%)
Query: 206 KKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 264
K P ++ +D ++ +P T++DV + FS+ G++ + R+++D+ + S+GV
Sbjct: 92 KVSYARPSSEVIKDAN-LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGV 149
Score = 62 (26.9 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 228 MPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG--NAIMMRDDG---NTLHSCLI 282
+P T+ ++ FS G+V +LI D+ + S G G N + +D NTL+ +
Sbjct: 27 LPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL 86
Query: 283 NS 284
S
Sbjct: 87 QS 88
Score = 58 (25.5 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 578 QGDVEEECSKYGRV--KHIYVDKR---SAGFVYLRFESTEAAASA 617
Q DVE+ S++GR+ + VD+ S G ++RF+ A A
Sbjct: 119 QKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEA 163
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 125 (49.1 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
Identities = 31/74 (41%), Positives = 41/74 (55%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
L V L NMT+ +LR LF G VE +L D G G+GFV + + A+ A S L
Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTL 81
Query: 440 NGKLEIVGRTLKVS 453
NG L + +T+KVS
Sbjct: 82 NG-LRLQSKTIKVS 94
Score = 118 (46.6 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 29/78 (37%), Positives = 44/78 (56%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
+++ NL + E L ++F PFG V V++ D T +CKGFGFV E A A ++L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 440 NGKLEIVGRTLKVSSVTD 457
NG + + L+VS T+
Sbjct: 306 NG-YRLGDKILQVSFKTN 322
Score = 74 (31.1 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 15/59 (25%), Positives = 34/59 (57%)
Query: 206 KKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 264
K P ++ +D ++ +P T++DV + FS+ G++ + R+++D+ + S+GV
Sbjct: 92 KVSYARPSSEVIKDAN-LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGV 149
Score = 62 (26.9 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 228 MPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG--NAIMMRD 272
+P T+ ++ FS G+V +LI D+ + S G G N + +D
Sbjct: 27 LPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKD 73
Score = 58 (25.5 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 578 QGDVEEECSKYGRV--KHIYVDKR---SAGFVYLRFESTEAAASA 617
Q DVE+ S++GR+ + VD+ S G ++RF+ A A
Sbjct: 119 QKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEA 163
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 125 (49.1 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
Identities = 31/74 (41%), Positives = 41/74 (55%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
L V L NMT+ +LR LF G VE +L D G G+GFV + + A+ A S L
Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTL 81
Query: 440 NGKLEIVGRTLKVS 453
NG L + +T+KVS
Sbjct: 82 NG-LRLQSKTIKVS 94
Score = 118 (46.6 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 29/78 (37%), Positives = 44/78 (56%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
+++ NL + E L ++F PFG V V++ D T +CKGFGFV E A A ++L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 440 NGKLEIVGRTLKVSSVTD 457
NG + + L+VS T+
Sbjct: 306 NG-YRLGDKILQVSFKTN 322
Score = 74 (31.1 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 15/59 (25%), Positives = 34/59 (57%)
Query: 206 KKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 264
K P ++ +D ++ +P T++DV + FS+ G++ + R+++D+ + S+GV
Sbjct: 92 KVSYARPSSEVIKDAN-LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGV 149
Score = 62 (26.9 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 228 MPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG--NAIMMRD 272
+P T+ ++ FS G+V +LI D+ + S G G N + +D
Sbjct: 27 LPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKD 73
Score = 58 (25.5 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 578 QGDVEEECSKYGRV--KHIYVDKR---SAGFVYLRFESTEAAASA 617
Q DVE+ S++GR+ + VD+ S G ++RF+ A A
Sbjct: 119 QKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEA 163
>RGD|1596822 [details] [associations]
symbol:Lemd3 "LEM domain containing 3" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005635 "nuclear envelope" evidence=ISO] [GO:0005637 "nuclear
inner membrane" evidence=ISO] [GO:0005639 "integral to nuclear
inner membrane" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=ISO] [GO:0030512 "negative regulation of transforming
growth factor beta receptor signaling pathway" evidence=ISO]
[GO:0030514 "negative regulation of BMP signaling pathway"
evidence=ISO] [GO:0032926 "negative regulation of activin receptor
signaling pathway" evidence=ISO] [GO:0035914 "skeletal muscle cell
differentiation" evidence=ISO] [GO:0051726 "regulation of cell
cycle" evidence=ISO] InterPro:IPR012677 InterPro:IPR018996
Pfam:PF09402 RGD:1596822 INTERPRO:IPR003887 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0051726 GO:GO:0032926 Gene3D:1.10.720.40
InterPro:IPR011015 Pfam:PF03020 SUPFAM:SSF63451 PROSITE:PS50954
GO:GO:0035914 GO:GO:0030512 GO:GO:0030514 SMART:SM00540
GO:GO:0005639 IPI:IPI00781464 Ensembl:ENSRNOT00000058176
Uniprot:F1M029
Length = 923
Score = 156 (60.0 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 34/95 (35%), Positives = 54/95 (56%)
Query: 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFES 610
S + CL ++NMFDP ME + L IQ + E+CS + HI VD+ S G VY++ S
Sbjct: 793 SLTPCLKIRNMFDPVMEIGDHWHLAIQEAILEKCSDNDGIVHIAVDRNSREGCVYVKCLS 852
Query: 611 TEAAASAQRAMHMRWFARRLISAIFMKPEDYEAKF 645
A A +A+H WF +L++ +++ + Y +F
Sbjct: 853 PGHAGKAFKALHGSWFDGKLVTVKYLRLDRYHHRF 887
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 146 (56.5 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 38/112 (33%), Positives = 59/112 (52%)
Query: 342 LLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPF 401
+L + + VK E EK+ SA P A++ KLY GNL +N+ L ++ + F
Sbjct: 55 VLSETITVKLEEEEKD---DGASA---VLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDF 108
Query: 402 GPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 453
ELV++ + +TGQ +GF FV + +E L+G E +GR LKV+
Sbjct: 109 ANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGT-EYLGRALKVN 159
Score = 118 (46.6 bits), Expect = 0.00018, P = 0.00018
Identities = 26/81 (32%), Positives = 45/81 (55%)
Query: 373 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 432
Y + KL+VGNL + +T L F G V ++ D +TG+ +G+GFV ++
Sbjct: 172 YPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEM 231
Query: 433 KAAQSALNGKLEIVGRTLKVS 453
+ A +L+G E+ GR ++V+
Sbjct: 232 ETALESLDG-FELEGRAIRVN 251
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 122 (48.0 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 30/74 (40%), Positives = 41/74 (55%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
L V L NMT+ +LR LF G VE +L D G G+GFV + + A+ A + L
Sbjct: 30 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 89
Query: 440 NGKLEIVGRTLKVS 453
NG L + +T+KVS
Sbjct: 90 NG-LRLQSKTIKVS 102
Score = 118 (46.6 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 29/78 (37%), Positives = 44/78 (56%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
+++ NL + E L ++F PFG V V++ D T +CKGFGFV E A A ++L
Sbjct: 254 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 313
Query: 440 NGKLEIVGRTLKVSSVTD 457
NG + + L+VS T+
Sbjct: 314 NG-YRLGDKILQVSFKTN 330
Score = 74 (31.1 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 15/59 (25%), Positives = 34/59 (57%)
Query: 206 KKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 264
K P ++ +D ++ +P T++DV + FS+ G++ + R+++D+ + S+GV
Sbjct: 100 KVSYARPSSEVIKDAN-LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGV 157
Score = 62 (26.9 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 228 MPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG--NAIMMRDDG---NTLHSCLI 282
+P T+ ++ FS G+V +LI D+ + S G G N + +D NTL+ +
Sbjct: 35 LPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL 94
Query: 283 NS 284
S
Sbjct: 95 QS 96
Score = 58 (25.5 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 578 QGDVEEECSKYGRV--KHIYVDKR---SAGFVYLRFESTEAAASA 617
Q DVE+ S++GR+ + VD+ S G ++RF+ A A
Sbjct: 127 QKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEA 171
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 118 (46.6 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
LYV NL + + +LRK F PFG + ++ + E G+ KGFGFV F+ E A A + +
Sbjct: 296 LYVKNLDDGLDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 440 NGKL 443
NG++
Sbjct: 354 NGRI 357
Score = 115 (45.5 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 28/88 (31%), Positives = 50/88 (56%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
+Y+ N +M + +L+++F +GP +++ D ++G+ KGFGFV F + E A+ A +
Sbjct: 193 VYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTD-DSGKSKGFGFVSFERHEDAQRAVDEM 251
Query: 440 NGKLEIVGRTLKVSSVTDHVGTQDTAAK 467
NGK E+ G+ + V G + T K
Sbjct: 252 NGK-EMNGKQVYVGRAQKK-GERQTELK 277
Score = 112 (44.5 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 25/73 (34%), Positives = 43/73 (58%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
LYVG+LH ++TE L + F P GP+ +++ D+ T + G+ +V F Q A+ A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDTM 72
Query: 440 NGKLEIVGRTLKV 452
N + I GR +++
Sbjct: 73 NFDV-IKGRPVRI 84
Score = 84 (34.6 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 31/127 (24%), Positives = 55/127 (43%)
Query: 318 VSYRYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAI 376
+ Y Y+ F A+ ++ ++ G+PV + S+ + +L +S
Sbjct: 52 LGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVG------------ 99
Query: 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 436
+++ NL ++ L F FG + ++ D E G KG+GFV F E A+ A
Sbjct: 100 --NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETHEAAERAI 155
Query: 437 SALNGKL 443
+NG L
Sbjct: 156 EKMNGML 162
Score = 68 (29.0 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 210 VEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKG 263
+ P A P +++ + TE +YE FS AG + +R+ D +RRS G
Sbjct: 1 MNPSA-PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLG 53
Score = 57 (25.1 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 21/71 (29%), Positives = 34/71 (47%)
Query: 581 VEEECSKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 636
+ +E S +G + K + RS GF ++ F S E A A M+ R A + L A+
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 637 KPEDYEAKFKS 647
+ E+ +A S
Sbjct: 370 RKEERQAHLTS 380
Score = 50 (22.7 bits), Expect = 7.2e-06, Sum P(3) = 7.2e-06
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
+F + + +Y+ FS G + +++ D N SKG G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYG 141
>UNIPROTKB|E9PTS0 [details] [associations]
symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
Length = 331
Score = 110 (43.8 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 352 SEAEKNLVQSNTSAGGTATGPYGAI----D--RKLYVGNLHFNMTETQLRKLFEPFGPVE 405
S EK L Q G P A+ D +K++VG L+ TE ++R+ F FG +E
Sbjct: 126 SSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGEIE 185
Query: 406 LVQLPLDIETGQCKGFGFVQFAQLEHAK 433
++LP+D + + +GF F+ F + + K
Sbjct: 186 AIELPIDPKLNKRRGFVFITFKEEDPVK 213
Score = 82 (33.9 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 18/59 (30%), Positives = 34/59 (57%)
Query: 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGN 275
E D +F + +++D+ ++F+K G+V D + MD N+ RS+G G I+ +D +
Sbjct: 70 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFG-FILFKDSSS 127
>UNIPROTKB|Q9QX81 [details] [associations]
symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
Uniprot:Q9QX81
Length = 332
Score = 110 (43.8 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 352 SEAEKNLVQSNTSAGGTATGPYGAI----D--RKLYVGNLHFNMTETQLRKLFEPFGPVE 405
S EK L Q G P A+ D +K++VG L+ TE ++R+ F FG +E
Sbjct: 127 SSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGEIE 186
Query: 406 LVQLPLDIETGQCKGFGFVQFAQLEHAK 433
++LP+D + + +GF F+ F + + K
Sbjct: 187 AIELPIDPKLNKRRGFVFITFKEEDPVK 214
Score = 82 (33.9 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 18/59 (30%), Positives = 34/59 (57%)
Query: 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGN 275
E D +F + +++D+ ++F+K G+V D + MD N+ RS+G G I+ +D +
Sbjct: 71 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFG-FILFKDSSS 128
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 123 (48.4 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 33/99 (33%), Positives = 50/99 (50%)
Query: 359 VQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQC 418
+ TS G + ++V NL + E+ L ++F PFG V V++ D T +C
Sbjct: 286 IDGMTSLAGINIPGHAGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKC 345
Query: 419 KGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 457
KGFGFV + A A ++LNG + R L+VS T+
Sbjct: 346 KGFGFVTMTNYDEAAMAIASLNG-YRLGDRVLQVSFKTN 383
Score = 122 (48.0 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 41/140 (29%), Positives = 68/140 (48%)
Query: 323 IEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTA----TGPYGA--- 375
+ DV S+ + + + + GQ + ++ +NT+ G A + P +
Sbjct: 3 VRLCDVASLLRSGSWAAEPWTGQVIAAMETQLSNGPTCNNTAHGSNAINNCSSPIDSGNT 62
Query: 376 IDRK--LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAK 433
D K L V L +MT+ +L+ LF G +E +L D TGQ G+GFV + + A+
Sbjct: 63 EDSKTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAE 122
Query: 434 AAQSALNGKLEIVGRTLKVS 453
A + LNG L + +T+KVS
Sbjct: 123 KAINTLNG-LRLQTKTIKVS 141
Score = 113 (44.8 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 36/115 (31%), Positives = 57/115 (49%)
Query: 337 LSGQLL-LGQPVMVKPSEAEKNL-------VQSNTSAGGTATGPYGAI-DRKLYVGNLHF 387
++GQ L G V P +AEK + +Q+ T A +I D LYV L
Sbjct: 103 ITGQSLGYGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPK 162
Query: 388 NMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK 442
MT+ +L +LF +G + ++ +D TG +G GF++F + A+ A LNG+
Sbjct: 163 TMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNGQ 217
Score = 70 (29.7 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 15/60 (25%), Positives = 33/60 (55%)
Query: 206 KKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
K P + RD ++ +P T++++ + FS+ G++ R+++D+ + S+GVG
Sbjct: 139 KVSYARPSSASIRDAN-LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVG 197
Score = 56 (24.8 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 219 DQRT-VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
D +T + +P T+ ++ F G++ +L+ D+ + +S G G
Sbjct: 64 DSKTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYG 111
Score = 50 (22.7 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 578 QGDVEEECSKYGRV--KHIYVDK---RSAGFVYLRFESTEAAASAQRAMH 622
Q ++E+ S+YGR+ I VD+ S G ++RF+ A A + ++
Sbjct: 166 QKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLN 215
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 119 (46.9 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 39/144 (27%), Positives = 69/144 (47%)
Query: 320 YRYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDR 378
Y ++ F + AI ++G LL + V V ++ K + G A
Sbjct: 140 YGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRK---EREAELGARAKE-----FT 191
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
+Y+ N +M + +L+++F +GP V++ D + G+ KGFGFV F + E A+ A
Sbjct: 192 NVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDE 250
Query: 439 LNGKLEIVGRTLKVSSVTDHVGTQ 462
+NGK ++ G+++ V V Q
Sbjct: 251 MNGK-DMNGKSMFVGRAQKKVERQ 273
Score = 114 (45.2 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
LYV NL + + +LRK F PFG + ++ + E G+ KGFGFV F+ E A A + +
Sbjct: 296 LYVKNLDDGIDDERLRKEFLPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 440 NGKL 443
NG++
Sbjct: 354 NGRI 357
Score = 112 (44.5 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 25/73 (34%), Positives = 43/73 (58%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
LYVG+LH ++TE L + F P GP+ +++ D+ T + G+ +V F Q A+ A +
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 440 NGKLEIVGRTLKV 452
N + I GR +++
Sbjct: 73 NFDV-IKGRPVRI 84
Score = 85 (35.0 bits), Expect = 0.00062, Sum P(3) = 0.00062
Identities = 31/127 (24%), Positives = 55/127 (43%)
Query: 318 VSYRYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAI 376
+ Y Y+ F A+ ++ ++ G+PV + S+ + +L +S
Sbjct: 52 LGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVG------------ 99
Query: 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 436
+++ NL ++ L F FG + ++ D E G KG+GFV F E A+ A
Sbjct: 100 --NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 437 SALNGKL 443
+NG L
Sbjct: 156 DKMNGML 162
Score = 68 (29.0 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 210 VEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKG 263
+ P A P +++ + TE +YE FS AG + +R+ D +RRS G
Sbjct: 1 MNPSA-PSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLG 53
Score = 52 (23.4 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 599 RSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFMKPEDYEA 643
RS GF ++ F S E A A M+ R A + L A+ + E+ +A
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Score = 50 (22.7 bits), Expect = 8.1e-06, Sum P(3) = 8.1e-06
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
+F + + +Y+ FS G + +++ D N SKG G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYG 141
>UNIPROTKB|E1BUM0 [details] [associations]
symbol:PPIE "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003755 "peptidyl-prolyl cis-trans
isomerase activity" evidence=IEA] [GO:0006457 "protein folding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 CTD:10450 KO:K09564 OMA:AFIEFEL
EMBL:AADN02043740 EMBL:AADN02043741 EMBL:AADN02043742
EMBL:AADN02043743 IPI:IPI00575389 RefSeq:XP_423739.2
UniGene:Gga.4709 ProteinModelPortal:E1BUM0
Ensembl:ENSGALT00000021831 GeneID:426061 KEGG:gga:426061
NextBio:20827786 ArrayExpress:E1BUM0 Uniprot:E1BUM0
Length = 301
Score = 147 (56.8 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 34/79 (43%), Positives = 47/79 (59%)
Query: 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKA 434
A R LYVG L + E L F PFG + +Q+PLD ET + +GF FV+F E A A
Sbjct: 3 ATKRVLYVGGLAEEVDEKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAA 62
Query: 435 AQSALNGKLEIVGRTLKVS 453
A +N + E+ GRT++V+
Sbjct: 63 AIDNMN-ESELFGRTIRVN 80
>WB|WBGene00000774 [details] [associations]
symbol:cpf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
NextBio:893824 Uniprot:O45577
Length = 336
Score = 148 (57.2 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 30/91 (32%), Positives = 55/91 (60%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 437
R ++VGN+ ++++E +R +F G V +++ D ETG+ KG+GF++F ++ A+ A
Sbjct: 18 RSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIR 77
Query: 438 ALNGKLEIVGRTLKVSSVTDHVGTQDTAAKS 468
LNG E+ GR L+V S + ++ + S
Sbjct: 78 NLNG-YELSGRILRVDSAAGGMNMEEFGSSS 107
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 121 (47.7 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 30/74 (40%), Positives = 42/74 (56%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
++V NL + E L ++F PFG V V++ D T +CKGFGFV E A A S+L
Sbjct: 288 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSKCKGFGFVTMTNYEEAAMAISSL 347
Query: 440 NGKLEIVGRTLKVS 453
NG + + L+VS
Sbjct: 348 NG-YRLGDKVLQVS 360
Score = 71 (30.1 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 15/59 (25%), Positives = 34/59 (57%)
Query: 206 KKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 264
K P +D +D ++ +P T+++V + F++ G++ + R+++D+ S S+GV
Sbjct: 136 KVSYARPSSDGIKDAN-LYISGLPKTMTQKNVEDMFTQYGRIINSRILVDQASGLSRGV 193
Score = 57 (25.1 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 211 EPEADPERDQRT--VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDR 256
+P D D +T + Y +P ++ ++ FS G+V +LI D+
Sbjct: 45 DPMGDEPSDAKTNLIINY-LPQNMSQEELRSLFSSIGEVESAKLIRDK 91
>UNIPROTKB|Q9BZC1 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0006376 "mRNA splice
site selection" evidence=IEA] [GO:0090394 "negative regulation of
excitatory postsynaptic membrane potential" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0042835 "BRE binding"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0007281 "germ cell development"
evidence=NAS] [GO:0009790 "embryo development" evidence=NAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=NAS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IDA] [GO:0000380 "alternative mRNA
splicing, via spliceosome" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0009790 GO:GO:0007281
GO:GO:0000900 GO:GO:0000380 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 GO:GO:0042835 GO:GO:0006376
GO:GO:0000381 OrthoDB:EOG4RJG30 CTD:56853 EMBL:AF329265
EMBL:AK074596 EMBL:AB209774 EMBL:BC001946 EMBL:BC004167
EMBL:BC045711 EMBL:AF248650 EMBL:AF248651 IPI:IPI00024603
IPI:IPI00384535 IPI:IPI00853216 IPI:IPI00853277 IPI:IPI00853444
RefSeq:NP_001020258.1 RefSeq:NP_001020259.1 RefSeq:NP_001020260.1
RefSeq:NP_064565.1 UniGene:Hs.435976 UniGene:Hs.600908 PDB:2DGP
PDB:2DNK PDBsum:2DGP PDBsum:2DNK ProteinModelPortal:Q9BZC1
SMR:Q9BZC1 STRING:Q9BZC1 PhosphoSite:Q9BZC1 DMDM:74761348
PRIDE:Q9BZC1 Ensembl:ENST00000334919 Ensembl:ENST00000361795
Ensembl:ENST00000412753 Ensembl:ENST00000420428 GeneID:56853
KEGG:hsa:56853 UCSC:uc002lae.2 UCSC:uc002laf.2 UCSC:uc002lag.2
UCSC:uc021uix.1 UCSC:uc021uiy.1 GeneCards:GC18M034823
HGNC:HGNC:14015 HPA:HPA037986 MIM:612679 neXtProt:NX_Q9BZC1
PharmGKB:PA25428 InParanoid:Q9BZC1 OMA:EDSEKNG PhylomeDB:Q9BZC1
ChiTaRS:CELF4 EvolutionaryTrace:Q9BZC1 GenomeRNAi:56853
NextBio:62266 ArrayExpress:Q9BZC1 Bgee:Q9BZC1 CleanEx:HS_BRUNOL4
Genevestigator:Q9BZC1 Uniprot:Q9BZC1
Length = 486
Score = 129 (50.5 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 53/188 (28%), Positives = 85/188 (45%)
Query: 343 LGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFG 402
+ +P+ VKP+++E G + + DRKL+VG L+ +E +R+LFE FG
Sbjct: 124 MNRPIQVKPADSESR-------GGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFG 176
Query: 403 PVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRT--LKVSSV-TDHV 459
+E + L G KG FV+++ A+AA +AL+G + G + L V TD
Sbjct: 177 NIEECTI-LRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKE 235
Query: 460 GT----QDTAAKSAXXXXXXXXXLALNAQSRALLMQKLDRTGIATSIA--GSLGVAPAVN 513
T Q A + A A ++AL+ Q+ + S+A G L A
Sbjct: 236 RTMRRMQQMAGQMGMFNPMAIPFGAYGAYAQALMQQQ---AALMASVAQGGYLNPMAAFA 292
Query: 514 GSAVNQQA 521
+ + Q A
Sbjct: 293 AAQMQQMA 300
Score = 66 (28.3 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 212 PEADPERDQRTV--FAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKG 263
P P +D + F Q+P E+D+ F + GK+ ++ ++ DR + KG
Sbjct: 43 PSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKG 96
>UNIPROTKB|Q5NVC8 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9601
"Pongo abelii" [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 CTD:56853 EMBL:CR859631
EMBL:CR860590 EMBL:CR926110 RefSeq:NP_001127577.1
RefSeq:NP_001128833.1 UniGene:Pab.18713 ProteinModelPortal:Q5NVC8
SMR:Q5NVC8 PRIDE:Q5NVC8 GeneID:100174655 KEGG:pon:100174655
InParanoid:Q5NVC8 Uniprot:Q5NVC8
Length = 486
Score = 129 (50.5 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 53/188 (28%), Positives = 85/188 (45%)
Query: 343 LGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFG 402
+ +P+ VKP+++E G + + DRKL+VG L+ +E +R+LFE FG
Sbjct: 124 MNRPIQVKPADSESR-------GGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFG 176
Query: 403 PVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRT--LKVSSV-TDHV 459
+E + L G KG FV+++ A+AA +AL+G + G + L V TD
Sbjct: 177 NIEECTI-LRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKE 235
Query: 460 GT----QDTAAKSAXXXXXXXXXLALNAQSRALLMQKLDRTGIATSIA--GSLGVAPAVN 513
T Q A + A A ++AL+ Q+ + S+A G L A
Sbjct: 236 RTMRRMQQMAGQMGMFNPMAIPFGAYGAYAQALMQQQ---AALMASVAQGGYLNPMAAFA 292
Query: 514 GSAVNQQA 521
+ + Q A
Sbjct: 293 AAQMQQMA 300
Score = 66 (28.3 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 212 PEADPERDQRTV--FAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKG 263
P P +D + F Q+P E+D+ F + GK+ ++ ++ DR + KG
Sbjct: 43 PSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKG 96
>MGI|MGI:1932407 [details] [associations]
symbol:Celf4 "CUGBP, Elav-like family member 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376 "mRNA splice site
selection" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=ISO] [GO:0090394 "negative regulation of excitatory
postsynaptic membrane potential" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1932407 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724 GO:GO:0000380
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
GO:GO:0000381 OrthoDB:EOG4RJG30 CTD:56853 ChiTaRS:CELF4
EMBL:AF515450 EMBL:AK044072 EMBL:AK048427 EMBL:AK051458
EMBL:AC121094 EMBL:AC144938 EMBL:AC153142 EMBL:BC048405
EMBL:BC052744 EMBL:AF314173 IPI:IPI00222845 IPI:IPI00330819
IPI:IPI00470036 IPI:IPI00757837 IPI:IPI00853687 IPI:IPI00853900
IPI:IPI00853926 RefSeq:NP_001139764.1 RefSeq:NP_001139765.1
RefSeq:NP_001139766.1 RefSeq:NP_001139767.1 RefSeq:NP_001167545.1
RefSeq:NP_573458.2 UniGene:Mm.266435 ProteinModelPortal:Q7TSY6
SMR:Q7TSY6 STRING:Q7TSY6 PhosphoSite:Q7TSY6 PaxDb:Q7TSY6
PRIDE:Q7TSY6 Ensembl:ENSMUST00000025117 Ensembl:ENSMUST00000115816
GeneID:108013 KEGG:mmu:108013 UCSC:uc008ehk.2 UCSC:uc008ehl.2
UCSC:uc012ban.1 UCSC:uc012bao.1 UCSC:uc012bap.1 UCSC:uc012baq.1
OMA:SAMESIN NextBio:359881 Bgee:Q7TSY6 CleanEx:MM_BRUNOL4
Genevestigator:Q7TSY6 GO:GO:0090394 Uniprot:Q7TSY6
Length = 486
Score = 129 (50.5 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 53/188 (28%), Positives = 85/188 (45%)
Query: 343 LGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFG 402
+ +P+ VKP+++E G + + DRKL+VG L+ +E +R+LFE FG
Sbjct: 124 MNRPIQVKPADSESR-------GGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFG 176
Query: 403 PVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRT--LKVSSV-TDHV 459
+E + L G KG FV+++ A+AA +AL+G + G + L V TD
Sbjct: 177 NIEECTI-LRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKE 235
Query: 460 GT----QDTAAKSAXXXXXXXXXLALNAQSRALLMQKLDRTGIATSIA--GSLGVAPAVN 513
T Q A + A A ++AL+ Q+ + S+A G L A
Sbjct: 236 RTMRRMQQMAGQMGMFNPMAIPFGAYGAYAQALMQQQ---AALMASVAQGGYLNPMAAFA 292
Query: 514 GSAVNQQA 521
+ + Q A
Sbjct: 293 AAQMQQMA 300
Score = 66 (28.3 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 212 PEADPERDQRTV--FAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKG 263
P P +D + F Q+P E+D+ F + GK+ ++ ++ DR + KG
Sbjct: 43 PSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKG 96
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 110 (43.8 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 20/56 (35%), Positives = 36/56 (64%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAK 433
+K++VG L+ TE ++R+ F FG +E ++LP+D + + +GF F+ F + E K
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVK 209
Score = 81 (33.6 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRD 272
E D +F + +++D+ ++F+K G+V D + MD N+ RS+G G I+ +D
Sbjct: 66 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFG-FILFKD 120
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 121 (47.7 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
L V L NMT+ +LR LF G +E +L D G G+GFV + + A+ A + L
Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 440 NGKLEIVGRTLKVS 453
NG L + +T+KVS
Sbjct: 82 NG-LRLQSKTIKVS 94
Score = 119 (46.9 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 29/78 (37%), Positives = 44/78 (56%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
+++ NL + E L ++F PFG V V++ D T +CKGFGFV E A A ++L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIASL 305
Query: 440 NGKLEIVGRTLKVSSVTD 457
NG + + L+VS T+
Sbjct: 306 NG-YRLGDKILQVSFKTN 322
Score = 98 (39.6 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 436
D LY+ L MT+ + +F PFG + ++ +D TG +G F++F + A+ A
Sbjct: 105 DANLYISGLPRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164
Query: 437 SALNG 441
++ NG
Sbjct: 165 TSFNG 169
Score = 71 (30.1 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 15/59 (25%), Positives = 33/59 (55%)
Query: 206 KKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 264
K P ++ +D ++ +P T++DV + FS G++ + R+++D+ + S+GV
Sbjct: 92 KVSYARPSSEVIKDAN-LYISGLPRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGV 149
Score = 63 (27.2 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 228 MPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG--NAIMMRDDG---NTLHSCLI 282
+P T+ ++ FS G++ +LI D+ + S G G N + +D NTL+ +
Sbjct: 27 LPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL 86
Query: 283 NS 284
S
Sbjct: 87 QS 88
Score = 55 (24.4 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 578 QGDVEEECSKYGRV--KHIYVDKR---SAGFVYLRFESTEAAASA 617
Q DVE+ S +GR+ + VD+ S G ++RF+ A A
Sbjct: 119 QKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEA 163
>CGD|CAL0003946 [details] [associations]
symbol:orf19.1389 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0016071 "mRNA metabolic process"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0003946 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000101 KO:K14396
RefSeq:XP_714561.1 ProteinModelPortal:Q59YD7 GeneID:3643794
KEGG:cal:CaO19.1389 Uniprot:Q59YD7
Length = 163
Score = 128 (50.1 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 30/80 (37%), Positives = 46/80 (57%)
Query: 376 ID-RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKA 434
ID R +YVGN+ + T QL + F G +E V + D +G KG+ +++F Q E +
Sbjct: 25 IDGRSVYVGNVDYQSTPEQLEEFFHGVGVIERVTILFDRFSGLPKGYAYIEFEQTESVQK 84
Query: 435 AQSALNGKLEIVGRTLKVSS 454
A L+GK E GR L+V++
Sbjct: 85 AIDELHGK-EFRGRELRVTA 103
>UNIPROTKB|E5RG67 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00974428
ProteinModelPortal:E5RG67 SMR:E5RG67 Ensembl:ENST00000477044
ArrayExpress:E5RG67 Bgee:E5RG67 Uniprot:E5RG67
Length = 161
Score = 128 (50.1 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 34/112 (30%), Positives = 61/112 (54%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 437
+ LYVGNL ++TE + +LF GP + ++ +D T + FV+F + HA AA +
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 64
Query: 438 ALNGKLEIVGRTLKVS-SVTDHVGTQDTAAKSAXXXXXXXXXLALNAQSRAL 488
A+NG+ +I+G+ +KV+ + T +DT++ + + L+ S L
Sbjct: 65 AMNGR-KIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQVLVHLHMDSHKL 115
>UNIPROTKB|K7EJK3 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:14015 EMBL:AC015961 EMBL:AC090386
EMBL:AC093332 EMBL:AC129908 Ensembl:ENST00000589229 Uniprot:K7EJK3
Length = 162
Score = 128 (50.1 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 34/105 (32%), Positives = 56/105 (53%)
Query: 343 LGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFG 402
+ +P+ VKP+++E G + + DRKL+VG L+ +E +R+LFE FG
Sbjct: 1 MNRPIQVKPADSESR-------GGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFG 53
Query: 403 PVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG 447
+E + L G KG FV+++ A+AA +AL+G + G
Sbjct: 54 NIEECTI-LRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPG 97
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 128 (50.1 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 35/97 (36%), Positives = 52/97 (53%)
Query: 356 KNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIET 415
K++ N+SA T G + KL++G L F TE L + F G V Q+ +D +
Sbjct: 13 KSVCLINSSASCFFTQRRG-VASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVS 71
Query: 416 GQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 452
+ KGFGFV FA + A+ A NG+ ++ GRT+ V
Sbjct: 72 DRSKGFGFVTFASADEAQKALMEFNGQ-QLNGRTIFV 107
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 134 (52.2 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 44/141 (31%), Positives = 69/141 (48%)
Query: 323 IEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEK--NLVQSN--TSAGGTATGPY----G 374
+ DV S+ + + + + GQ + ++ + SN S T T P G
Sbjct: 3 VRLCDVASLLRSGSWAAEPWTGQVIAAMETQLSNGPSCTSSNGPNSVSNTCTSPVEMPNG 62
Query: 375 AIDRK--LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 432
+ D K L V L NMT+ +L+ LF G +E +L D TGQ G+GFV + + + A
Sbjct: 63 SEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDA 122
Query: 433 KAAQSALNGKLEIVGRTLKVS 453
+ A + LNG L + +T+KVS
Sbjct: 123 EKAINTLNG-LRLQTKTIKVS 142
Score = 124 (48.7 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 33/95 (34%), Positives = 48/95 (50%)
Query: 363 TSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFG 422
TS G + ++V NL + E L ++F PFG V V++ D T +CKGFG
Sbjct: 290 TSLAGINLPAHAGTGWCIFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFG 349
Query: 423 FVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 457
FV + A A ++LNG + R L+VS T+
Sbjct: 350 FVTMTNYDEAAVAIASLNG-YRLGDRVLQVSFKTN 383
Score = 114 (45.2 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 36/115 (31%), Positives = 58/115 (50%)
Query: 337 LSGQLL-LGQPVMVKPSEAEKNL-------VQSNTSAGGTATGPYGAI-DRKLYVGNLHF 387
++GQ L G ++P +AEK + +Q+ T A +I D LYV L
Sbjct: 104 ITGQSLGYGFVNYMEPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPK 163
Query: 388 NMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK 442
MT+ +L +LF FG + ++ +D TG +G GF++F + A+ A LNG+
Sbjct: 164 TMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQ 218
Score = 68 (29.0 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 15/60 (25%), Positives = 33/60 (55%)
Query: 206 KKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
K P + RD ++ +P T++++ + FS+ G++ R+++D+ + S+GVG
Sbjct: 140 KVSYARPSSASIRDAN-LYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVG 198
Score = 57 (25.1 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 12/56 (21%), Positives = 25/56 (44%)
Query: 210 VEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
VE E + + +P T+ ++ F G++ +L+ D+ + +S G G
Sbjct: 57 VEMPNGSEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYG 112
>TAIR|locus:2083810 [details] [associations]
symbol:PSRP2 "plastid-specific ribosomal protein 2"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
Genevestigator:Q8VYM4 Uniprot:Q8VYM4
Length = 253
Score = 138 (53.6 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
Identities = 34/97 (35%), Positives = 50/97 (51%)
Query: 361 SNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKG 420
+ T A P R++Y+GN+ +T QL KL E G VE VQ+ D +G+ +
Sbjct: 59 TETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRR 118
Query: 421 FGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 457
FGF +E A A LNG + GR +KV+ +T+
Sbjct: 119 FGFATMKSVEDANAVVEKLNGNT-VEGREIKVN-ITE 153
Score = 118 (46.6 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 41/123 (33%), Positives = 62/123 (50%)
Query: 337 LSGQLLLGQPVMV----KP--SEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMT 390
L+G + G+ + V KP S + +++QS SA PY K+YVGNL +T
Sbjct: 137 LNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSA--FVDSPY-----KVYVGNLAKTVT 189
Query: 391 ETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTL 450
+ L LF G V ++ T + GFGFV F+ E +AA ALN L + G+ +
Sbjct: 190 KEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSL-LEGQKI 248
Query: 451 KVS 453
+V+
Sbjct: 249 RVN 251
Score = 67 (28.6 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 19/75 (25%), Positives = 36/75 (48%)
Query: 204 KEKKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKG 263
+EK ++P ++ R V+ +P T + + + G V V+++ D+ S RS+
Sbjct: 62 EEKPAALDPSSEAAR---RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRR 118
Query: 264 VGNAIMMR-DDGNTL 277
G A M +D N +
Sbjct: 119 FGFATMKSVEDANAV 133
Score = 37 (18.1 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 590 RVKHIYVDKRSAGFVYLRFESTEAAASAQRAMH 622
+V + +S GF ++ F S E +A A++
Sbjct: 207 KVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALN 239
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 130 (50.8 bits), Expect = 1.7e-07, Sum P(3) = 1.7e-07
Identities = 43/144 (29%), Positives = 69/144 (47%)
Query: 320 YRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDR 378
Y ++ F + AI ++G LL + V V ++ K + G A
Sbjct: 76 YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK---EREAELGARAKE-----FT 127
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
+Y+ N +M + +L++LF FGP V++ D E+G+ KGFGFV F + E A+ A
Sbjct: 128 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDE 186
Query: 439 LNGKLEIVGRTLKVSSVTDHVGTQ 462
+NGK E+ G+ + V V Q
Sbjct: 187 MNGK-ELNGKQIYVGRAQKKVERQ 209
Score = 117 (46.2 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439
LYV NL + + +LRK F PFG + ++ + E G+ KGFGFV F+ E A A + +
Sbjct: 232 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 289
Query: 440 NGKL 443
NG++
Sbjct: 290 NGRI 293
Score = 55 (24.4 bits), Expect = 1.7e-07, Sum P(3) = 1.7e-07
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 581 VEEECSKYGRV---KHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFM 636
+ +E S +G + K + RS GF ++ F S E A A M+ R A + L A+
Sbjct: 246 LRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 305
Query: 637 KPEDYEA 643
+ E+ +A
Sbjct: 306 RKEERQA 312
Score = 50 (22.7 bits), Expect = 1.7e-07, Sum P(3) = 1.7e-07
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 265
+F + + +Y+ FS G + +++ D N SKG G
Sbjct: 37 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYG 77
>WB|WBGene00000889 [details] [associations]
symbol:cyn-13 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0006457 "protein folding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0006915 "apoptotic
process" evidence=IGI;IMP] [GO:0006309 "apoptotic DNA
fragmentation" evidence=IGI;IMP] [GO:0004518 "nuclease activity"
evidence=IDA] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006309 GO:GO:0004518 eggNOG:COG0724
HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 HSSP:P52011 KO:K09564 OMA:AFIEFEL
EMBL:AL117204 GeneID:178487 KEGG:cel:CELE_Y116A8C.34 CTD:178487
PIR:T31517 RefSeq:NP_001255925.1 ProteinModelPortal:Q9U2S6
SMR:Q9U2S6 IntAct:Q9U2S6 STRING:Q9U2S6 PaxDb:Q9U2S6 PRIDE:Q9U2S6
EnsemblMetazoa:Y116A8C.34a.1 EnsemblMetazoa:Y116A8C.34a.2
EnsemblMetazoa:Y116A8C.34a.3 UCSC:Y116A8C.34.1 WormBase:Y116A8C.34a
InParanoid:Q9U2S6 NextBio:901332 Uniprot:Q9U2S6
Length = 331
Score = 147 (56.8 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 31/76 (40%), Positives = 47/76 (61%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 437
R LYVG ++TE L F PFG V + +P+D E+G+ +GFGFV+F E A A
Sbjct: 11 RTLYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAID 70
Query: 438 ALNGKLEIVGRTLKVS 453
+N + E+ G+T++V+
Sbjct: 71 NMN-ESELFGKTIRVN 85
>UNIPROTKB|Q9U2S6 [details] [associations]
symbol:cyn-13 "Protein CYN-13, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006309 GO:GO:0004518 eggNOG:COG0724
HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 HSSP:P52011 KO:K09564 OMA:AFIEFEL
EMBL:AL117204 GeneID:178487 KEGG:cel:CELE_Y116A8C.34 CTD:178487
PIR:T31517 RefSeq:NP_001255925.1 ProteinModelPortal:Q9U2S6
SMR:Q9U2S6 IntAct:Q9U2S6 STRING:Q9U2S6 PaxDb:Q9U2S6 PRIDE:Q9U2S6
EnsemblMetazoa:Y116A8C.34a.1 EnsemblMetazoa:Y116A8C.34a.2
EnsemblMetazoa:Y116A8C.34a.3 UCSC:Y116A8C.34.1 WormBase:Y116A8C.34a
InParanoid:Q9U2S6 NextBio:901332 Uniprot:Q9U2S6
Length = 331
Score = 147 (56.8 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 31/76 (40%), Positives = 47/76 (61%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 437
R LYVG ++TE L F PFG V + +P+D E+G+ +GFGFV+F E A A
Sbjct: 11 RTLYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAID 70
Query: 438 ALNGKLEIVGRTLKVS 453
+N + E+ G+T++V+
Sbjct: 71 NMN-ESELFGKTIRVN 85
WARNING: HSPs involving 775 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.134 0.379 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 647 430 0.00086 118 3 11 22 0.38 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1025
No. of states in DFA: 604 (64 KB)
Total size of DFA: 231 KB (2127 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 30.39u 0.12s 30.51t Elapsed: 00:00:01
Total cpu time: 30.43u 0.12s 30.55t Elapsed: 00:00:01
Start: Mon May 20 17:36:07 2013 End: Mon May 20 17:36:08 2013
WARNINGS ISSUED: 2