BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006380
(647 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 225 bits (574), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 165/451 (36%), Positives = 227/451 (50%), Gaps = 83/451 (18%)
Query: 204 KEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR 260
K+K V EP PE RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRR
Sbjct: 133 KDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 192
Query: 261 SKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVGMVFFLLGDETYTVLDPATVLVSY 320
SKG+ ++F V+ V
Sbjct: 193 SKGI---------------------AYVEFVDVSSV------------------------ 207
Query: 321 RYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKN--LVQSNTSAGGTATGPYGAIDR 378
P+AI L+GQ +LG P++V+ S+AEKN +N G+A GP
Sbjct: 208 -----------PLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSA-GPM----- 250
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
+LYVG+LHFN+TE LR +FEPFG +E +QL +D ETG+ KG+GF+ F+ E AK A
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 439 LNGKLEIVGRTLKVSSVTDHVGTQDTAAKSADFDDDDG--GGLALNAQSRALLMQKL-DR 495
LNG E+ GR +KV VT+ D ++ S+ D D+ G+ L R LM +L +
Sbjct: 311 LNG-FELAGRPMKVGHVTERT---DASSASSFLDSDELERTGIDLGTTGRLQLMARLAEG 366
Query: 496 TGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPAVTAPVIPNMAAEFIGSPSE 555
TG L + PA + +++ V + T AA ++
Sbjct: 367 TG--------LQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLATQ 418
Query: 556 CLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVYLRFESTEAA 614
C L NMF+P E + +D EI+ DV EEC+K+G V HIYVDK SA G VY++ S AA
Sbjct: 419 CFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAA 478
Query: 615 ASAQRAMHMRWFARRLISAIFMKPEDYEAKF 645
+A A+H RWFA ++I+A ++ Y F
Sbjct: 479 IAAVNALHGRWFAGKMITAAYVPLPTYHNLF 509
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 224 bits (570), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 169/460 (36%), Positives = 231/460 (50%), Gaps = 95/460 (20%)
Query: 204 KEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR 260
K+K V EP PE RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRR
Sbjct: 133 KDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 192
Query: 261 SKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVGMVFFLLGDETYTVLDPATVLVSY 320
SKG+ ++F V+ V
Sbjct: 193 SKGI---------------------AYVEFVDVSSV------------------------ 207
Query: 321 RYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKN--LVQSNTSAGGTATGPYGAIDR 378
P+AI L+GQ +LG P++V+ S+AEKN +N G+A GP
Sbjct: 208 -----------PLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSA-GPM----- 250
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
+LYVG+LHFN+TE LR +FEPFG +E +QL +D ETG+ KG+GF+ F+ E AK A
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 439 LNGKLEIVGRTLKVSSVTDHVGTQDTAAKSADFDDDDG--GGLALNAQSRALLMQKL-DR 495
LNG E+ GR +KV VT+ D ++ S+ D D+ G+ L R LM +L +
Sbjct: 311 LNG-FELAGRPMKVGHVTERT---DASSASSFLDSDELERTGIDLGTTGRLQLMARLAEG 366
Query: 496 TGI--------ATSIAGSLGVAPAVNGSAVNQQAISLPV-VGQPAVPVPAVTAPVIPNMA 546
TG+ A ++GSL S V I L + Q A + +A
Sbjct: 367 TGLQIPPAAQQALQMSGSLAFGAVAEFSFV----IDLQTRLSQQTEASALAAAASVQPLA 422
Query: 547 AEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVY 605
++C L NMF+P E + +D EI+ DV EEC+K+G V HIYVDK SA G VY
Sbjct: 423 -------TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVY 475
Query: 606 LRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEAKF 645
++ S AA +A A+H RWFA ++I+A ++ Y F
Sbjct: 476 VKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLF 515
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 224 bits (570), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 169/460 (36%), Positives = 231/460 (50%), Gaps = 95/460 (20%)
Query: 204 KEKKEVVEP--EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR 260
K+K V EP PE RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRR
Sbjct: 133 KDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 192
Query: 261 SKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVGMVFFLLGDETYTVLDPATVLVSY 320
SKG+ ++F V+ V
Sbjct: 193 SKGI---------------------AYVEFVDVSSV------------------------ 207
Query: 321 RYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKN--LVQSNTSAGGTATGPYGAIDR 378
P+AI L+GQ +LG P++V+ S+AEKN +N G+A GP
Sbjct: 208 -----------PLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSA-GPM----- 250
Query: 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438
+LYVG+LHFN+TE LR +FEPFG +E +QL +D ETG+ KG+GF+ F+ E AK A
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 439 LNGKLEIVGRTLKVSSVTDHVGTQDTAAKSADFDDDDG--GGLALNAQSRALLMQKL-DR 495
LNG E+ GR +KV VT+ D ++ S+ D D+ G+ L R LM +L +
Sbjct: 311 LNG-FELAGRPMKVGHVTERT---DASSASSFLDSDELERTGIDLGTTGRLQLMARLAEG 366
Query: 496 TGI--------ATSIAGSLGVAPAVNGSAVNQQAISLPV-VGQPAVPVPAVTAPVIPNMA 546
TG+ A ++GSL S V I L + Q A + +A
Sbjct: 367 TGLQIPPAAQQALQMSGSLAFGAVAEFSFV----IDLQTRLSQQTEASALAAAASVQPLA 422
Query: 547 AEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSA-GFVY 605
++C L NMF+P E + +D EI+ DV EEC+K+G V HIYVDK SA G VY
Sbjct: 423 -------TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVY 475
Query: 606 LRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEAKF 645
++ S AA +A A+H RWFA ++I+A ++ Y F
Sbjct: 476 VKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLF 515
>sp|O13845|RSD1_SCHPO RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rsd1 PE=1 SV=2
Length = 603
Score = 157 bits (397), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 113/330 (34%), Positives = 168/330 (50%), Gaps = 23/330 (6%)
Query: 322 YIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLY 381
Y+EF SV AIALSG+ LLG PV+V+ +EAEKN + A R L
Sbjct: 285 YVEFCHEDSVQAAIALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHR-LC 343
Query: 382 VGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG 441
V N+HFN+T+ ++ +FEPFG +E V L D + + KGFG++Q+ A+ A +NG
Sbjct: 344 VSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRNPISARNALEKMNG 402
Query: 442 KLEIVGRTLKVSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATS 501
++ GR ++V D T+ T++ FD+ L Q R+ Q R G +S
Sbjct: 403 -FDLAGRNMRVCLGNDKFTTETTSSMLKRFDE------TLARQERS---QPSQRNG-GSS 451
Query: 502 IAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPAVTAPVIPNMAAEFIGSP-----SEC 556
S A S ++ S P+ + A + + N ++ + P S C
Sbjct: 452 TYESQDYREAAPLSPTEEE--SRPITRDELMKKLARSEDISDN--SKLVSEPEPPIRSRC 507
Query: 557 LLLKNMFDPAMETDPDFDLEIQGDVEEECS-KYGRVKHIYVDKRSAGFVYLRFESTEAAA 615
LL+NMF+PA ET P++ E++ DV+EEC KYG+V HI V G ++++FE+ + A
Sbjct: 508 ALLENMFNPAEETSPNWVQELEQDVKEECDEKYGKVVHIAVVPNELGQIFVKFENADFAE 567
Query: 616 SAQRAMHMRWFARRLISAIFMKPEDYEAKF 645
A +H RWF R I A + DY KF
Sbjct: 568 KAITGLHQRWFGGRTIKASILPETDYYFKF 597
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%)
Query: 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDG 274
ERD+RTVF Q+ + T R++Y+FF +AG VRD +++ D+ S RSKGV +D
Sbjct: 236 ERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDS 293
Score = 39.3 bits (90), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 437
R ++V L +T +L FE GPV Q+ D +G+ KG +V+F + +AA
Sbjct: 240 RTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAA-I 298
Query: 438 ALNGK 442
AL+GK
Sbjct: 299 ALSGK 303
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1
Length = 439
Score = 147 bits (370), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 134/420 (31%), Positives = 186/420 (44%), Gaps = 94/420 (22%)
Query: 161 RSRRERERESERERELELERERERERELRERERDLEMRESRRY--------KEKKEVVEP 212
R R R R +R E R R+ RE R R + RY +EK V EP
Sbjct: 96 RQCRHRSRSWDRRHGSE-SRSRDHRREDRVHYRSPPLATGYRYGHSKSPHFREKSPVREP 154
Query: 213 --EADPE-RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIM 269
PE RD RTVF Q+ + RD+ +FFS GKVRDVR+I DRNSRRSKG
Sbjct: 155 VDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKG------ 208
Query: 270 MRDDGNTLHSCLINSCCVIKFFLVAEVGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVM 329
I + E+ V +G
Sbjct: 209 ------------------IAYVEFCEIQSVPLAIG------------------------- 225
Query: 330 SVPMAIALSGQLLLGQPVMVKPSEAEKN--LVQSNTSAGGTATGPYGAIDRKLYVGNLHF 387
L+GQ LLG P++V+ S+AEKN +N G GP +LYVG+LHF
Sbjct: 226 -------LTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNG-GPM-----RLYVGSLHF 272
Query: 388 NMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG 447
N+TE LR +FEPFG ++ + L D +TG+ KG+GF+ F+ E A+ A LNG E+ G
Sbjct: 273 NITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNG-FELAG 331
Query: 448 RTLKVSSVTDHV-GTQDTAAKSADFDDDDGGGLALNAQSRALLMQKL-DRTGIATSIAGS 505
R ++V VT+ + G D D + D G +A R LM KL + GI
Sbjct: 332 RPMRVGHVTERLDGGTDITFPDGDQELDLG-----SAGGRFQLMAKLAEGAGIQL----- 381
Query: 506 LGVAPAVNGSAVNQQAISLPVVGQPAVPVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDP 565
P+ +A A + + AVP+ A+ + ++ + S+C L ++F P
Sbjct: 382 ----PSTAAAAAAAAAQAAALQLNGAVPLGALNPAALTALSPA-LNLASQCFQLSSLFTP 436
>sp|Q2QKB3|U2A2A_WHEAT Splicing factor U2af large subunit A OS=Triticum aestivum
GN=U2AF65A PE=2 SV=1
Length = 591
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 85/190 (44%), Gaps = 24/190 (12%)
Query: 281 LINSCCVIKFF--LVAEVGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALS 338
+ N V FF ++A +G F LG V + ++E V A+AL
Sbjct: 282 IANEQTVAVFFNQVMAAIGGNTFALGHAVVNVY--INHDKKFAFVEMRSVEEASNAMALD 339
Query: 339 GQLLLGQPVMVK--------------PSEAEKNLVQSNTSAGGTATGPYGAIDR--KLYV 382
G + G PV V+ PS+ NL N +A G G G ++ +++V
Sbjct: 340 GIMFEGAPVKVRRPTDYNPSQAAALGPSQPNPNL---NLAAVGLTPGAGGGLEGPDRIFV 396
Query: 383 GNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK 442
G L + TE Q+R+L E FGP+ + D ETG KG+ F + A +ALNG
Sbjct: 397 GGLPYYFTEAQVRELLETFGPLRGFDIVKDKETGNSKGYAFCLYKDGTVTDIACAALNG- 455
Query: 443 LEIVGRTLKV 452
+++ RTL V
Sbjct: 456 IQLGDRTLTV 465
Score = 37.0 bits (84), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 55 KSRSGKRSRRDEDEENGSRRDRDRDRDRDKERHRRDRDRDRDRGRERERETERDRERSRE 114
K R G +D + S RDR R+RD DK DR+R R G +RER RDRE RE
Sbjct: 19 KKRGGDARSPQQDAQPLSSRDRVRERDEDK-----DRERHRRHGEDRER--YRDRESVRE 71
Query: 115 RRE 117
R E
Sbjct: 72 RGE 74
>sp|Q2QKB4|U2A2B_WHEAT Splicing factor U2af large subunit B OS=Triticum aestivum
GN=U2AF65B PE=2 SV=1
Length = 543
Score = 69.3 bits (168), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 320 YRYIEFYDVMSVPMAIALSGQLLLGQPVMVK--------------PSEAEKNLVQSNTSA 365
+ ++E V A+AL G L G PV V+ PS+ NL N +A
Sbjct: 256 FAFVEMRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSSNL---NLAA 312
Query: 366 GGTATGPYGAIDR--KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGF 423
G G G ++ +++VG L + TE Q+R+L E FGP+ L D ETG KG+ F
Sbjct: 313 VGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAF 372
Query: 424 VQFAQLEHAKAAQSALNGKLEIVGRTLKV 452
+ L A +ALNG +++ +TL V
Sbjct: 373 CVYQDLNVTDIACAALNG-IKMGDKTLTV 400
Score = 34.3 bits (77), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 13/81 (16%)
Query: 576 EIQGDVEEECSKYGRVKHIYVDK--------RSAGFVYLRFESTEAAASAQRAMHMRWFA 627
+I D+ E KYG + + + + G V+L + + + A+ AMH R F
Sbjct: 461 DIMEDMRLEAGKYGNLVKVVIPRPHPSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFG 520
Query: 628 RRLISAIF-----MKPEDYEA 643
+ A+F EDY+A
Sbjct: 521 GNPVVAVFYPENKFADEDYDA 541
>sp|F1QBY1|NIPLB_DANRE Nipped-B-like protein B OS=Danio rerio GN=nipblb PE=2 SV=1
Length = 2876
Score = 67.0 bits (162), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 119/205 (58%), Gaps = 32/205 (15%)
Query: 9 LEKTVEEQRQQKQDDDSSSKKKAKREEKSERSYRKREDSEEEEEEEKSRSGKRSRRDEDE 68
L + +E+R +++D DSS K +R + S+ S + +E+E+E+ G R+++
Sbjct: 646 LSRDCKEERHREKDSDSS---KGRRSDTSKSSRVEHNRDKEQEQEKVGDKGLEKGREKEL 702
Query: 69 ENGSRRDRDRDRDRDKERHRRDRDRDRDRGRERERETERDRERSRER-REKEKERERRER 127
E G ++R +D+++D+E+ RD++ ++GR +ER +R +E+ + R +E+ K R+++
Sbjct: 703 EKGRDKERVKDQEKDQEK---GRDKEVEKGRYKERVKDRVKEQEKVRDKEQVKGRDKKRS 759
Query: 128 RDREKERERERDGERRSSSRSRRSSSQSRRSSSRSRRERERESERERELELERERERERE 187
+D EK RE+++D E E++RE +++ELE RE+++++E
Sbjct: 760 KDLEKCREKDQDKEL----------------------EKDREKNQDKELEKGREKDQDKE 797
Query: 188 L---RERERDLEMRESRRYKEKKEV 209
L RE++RD EM ++R + KE+
Sbjct: 798 LEKGREKDRDKEMEKAREKDQDKEL 822
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 92/150 (61%), Gaps = 9/150 (6%)
Query: 1 MEFDEYEYLEKTVEEQRQQKQDDDSSSKKKAKREEKSERSYRKREDSEEEEEEEKSRSG- 59
+E D + +K +E+ R++ QD + ++ R+++ E++ K +D E E+ EK +
Sbjct: 774 LEKDREKNQDKELEKGREKDQDKELEKGREKDRDKEMEKAREKDQDKELEKGREKDQDKE 833
Query: 60 --KRSRRDEDEENGSRRDRDRDRDRDKERHR-----RDRDRDRDRGRERERETERDRERS 112
K +D D+ RD+ RD+DRDK R + R++DRD+ R ++RE+ ERDR++
Sbjct: 834 LEKGQEKDRDKVREKDRDKVRDKDRDKVREKDRDKVREKDRDKLREKDREKIRERDRDKG 893
Query: 113 RERREKEKERERRERRDREKERERERDGER 142
RE ++++KE+ + +D+EKER ++RD ER
Sbjct: 894 RE-KDRDKEQVKTREKDQEKERLKDRDKER 922
Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 125/211 (59%), Gaps = 24/211 (11%)
Query: 9 LEKTVEEQRQQKQDDDSSSKKKAKREEKSERSYRKREDSEEEE-----EEEKSRSGKRSR 63
LEK +++R + Q+ D K + K EK R ++ +E+E E+ K R KRS+
Sbjct: 702 LEKGRDKERVKDQEKDQE-KGRDKEVEKGRYKERVKDRVKEQEKVRDKEQVKGRDKKRSK 760
Query: 64 -----RDEDEENGSRRDRDRDRDRDKERHR-RDRDRDRDRGRERERETERDRERSRER-- 115
R++D++ +DR++++D++ E+ R +D+D++ ++GRE++R+ E ++ R +++
Sbjct: 761 DLEKCREKDQDKELEKDREKNQDKELEKGREKDQDKELEKGREKDRDKEMEKAREKDQDK 820
Query: 116 -------REKEKERERRERRDREKERERERDGER-RSSSRSRRSSSQSRRSSSRSR-RER 166
++++KE E+ + +DR+K RE++RD R + + R R R + RE+
Sbjct: 821 ELEKGREKDQDKELEKGQEKDRDKVREKDRDKVRDKDRDKVREKDRDKVREKDRDKLREK 880
Query: 167 ERESERERELELERERERERE-LRERERDLE 196
+RE RER+ + RE++R++E ++ RE+D E
Sbjct: 881 DREKIRERDRDKGREKDRDKEQVKTREKDQE 911
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 120/214 (56%), Gaps = 20/214 (9%)
Query: 11 KTVEEQRQQKQDDDSSSKKKAKREEKSERSYRKREDSEEEEEEEKSRSGKRSR-RDEDEE 69
K +E+ R++ QD + ++ ++++ E+ K +D E E+ EK R + + R++D++
Sbjct: 760 KDLEKCREKDQDKELEKDREKNQDKELEKGREKDQDKELEKGREKDRDKEMEKAREKDQD 819
Query: 70 NGSRRDRDRDRDRDKER-HRRDRDRDRDRGRERERETERDRERSRER-REKEKERERRER 127
+ R++D+D++ E+ +DRD+ R++ R++ R+ +RD+ R ++R + +EK+R++
Sbjct: 820 KELEKGREKDQDKELEKGQEKDRDKVREKDRDKVRDKDRDKVREKDRDKVREKDRDKLRE 879
Query: 128 RDREKERERERDGERRSSSRSRRSSSQSRRSSSRSRRERERESERERELELERERERERE 187
+DREK RER+RD R + R RE+++E ER + +R++ERE+
Sbjct: 880 KDREKIRERDRDKGRE----------KDRDKEQVKTREKDQEKERLK----DRDKEREKV 925
Query: 188 LRERERDLEMRESRRYKEKKEVVEPEADPERDQR 221
+ +E +R KE+ E + PE+ R
Sbjct: 926 RDKGRDRDRDQEKKR---NKELTEDKQAPEQRSR 956
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 129/222 (58%), Gaps = 19/222 (8%)
Query: 10 EKTVEEQRQQKQDDDSSSKKKAKREEKSERSYRKREDSEEEEEEEKSR-----SGKRSRR 64
EK +E+ R +++ D ++ R+++ E+ K + +E+EK R G+ +R
Sbjct: 699 EKELEKGRDKERVKDQEKDQEKGRDKEVEKGRYKERVKDRVKEQEKVRDKEQVKGRDKKR 758
Query: 65 DEDEENGSRRDRDRDRDRDKERHRRDRDRDRDRGRERERETERDRERSRERREKEKERER 124
+D E +D+D++ ++D+E+ ++D++ ++GRE++++ E ++ R ++R +KE E+ R
Sbjct: 759 SKDLEKCREKDQDKELEKDREK---NQDKELEKGREKDQDKELEKGREKDR-DKEMEKAR 814
Query: 125 RERRDREKERERERD-------GERRSSSRSRRSSSQSRRSSSRSR-RERERESEREREL 176
+ +D+E E+ RE+D G+ + + R R R + RE++R+ RE++
Sbjct: 815 EKDQDKELEKGREKDQDKELEKGQEKDRDKVREKDRDKVRDKDRDKVREKDRDKVREKDR 874
Query: 177 ELERERERERELRERERDLEMRESRRYKEKKEVVEPEADPER 218
+ RE++RE+ +RER+RD + RE R KE+ + E + + ER
Sbjct: 875 DKLREKDREK-IRERDRD-KGREKDRDKEQVKTREKDQEKER 914
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 100/173 (57%), Gaps = 11/173 (6%)
Query: 10 EKTVEEQRQQKQDDDSSSKKKAKREEKSERSYRKREDSEEEEEEEKSRSGKRSR-RDEDE 68
+K +E+ R++ QD + ++ ++++ E+ K D E++ +K R R + R++D
Sbjct: 807 DKEMEKAREKDQDKELEKGREKDQDKELEKGQEKDRDKVREKDRDKVRDKDRDKVREKDR 866
Query: 69 ENGSRRDRDRDRDRDKERHR---------RDRDRDRDRGRERERETERDRERSRERREKE 119
+ +DRD+ R++D+E+ R +DRD+++ + RE+++E ER ++R +E REK
Sbjct: 867 DKVREKDRDKLREKDREKIRERDRDKGREKDRDKEQVKTREKDQEKERLKDRDKE-REKV 925
Query: 120 KERERRERRDREKERERERDGERRSSSRSRRSSSQSRRSSSRSRRERERESER 172
+++ R RD+EK+R +E ++++ + R +S + R+ E + + ER
Sbjct: 926 RDKGRDRDRDQEKKRNKELTEDKQAPEQRSRPNSPRVKQEPRNGEESKIKPER 978
>sp|O23212|U2A2A_ARATH Splicing factor U2af large subunit A OS=Arabidopsis thaliana
GN=U2AF65A PE=2 SV=2
Length = 573
Score = 66.2 bits (160), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 87/189 (46%), Gaps = 18/189 (9%)
Query: 279 SCLINSCCVIKFF--LVAEVGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA 336
S N V FF ++A VG GD V + ++E V A++
Sbjct: 247 SPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVY--INHEKKFAFVEMRSVEEASNAMS 304
Query: 337 LSGQLLLGQPVMVK-PSEAEKNLVQS----------NTSAGGTATGPYGAIDR--KLYVG 383
L G + G PV V+ PS+ +L + N +A G G G ++ +++VG
Sbjct: 305 LDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLTPGASGGLEGPDRIFVG 364
Query: 384 NLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL 443
L + TE+Q+R+L E FG ++ L D ETG KG+ F + L A +ALNG +
Sbjct: 365 GLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNG-I 423
Query: 444 EIVGRTLKV 452
++ +TL V
Sbjct: 424 KMGDKTLTV 432
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 7/88 (7%)
Query: 67 DEENGSRRDRDRDR-DRDKERHRRDRDRDRDRGRERERETERDRERSRERREKEKERERR 125
DEENG R D+ D +R RD +R+ R ++RERE RD++ RE++ E RR
Sbjct: 19 DEENGGRDGEIEDQLDSKPKRESRDHERETSRSKDREREKGRDKD-----RERDSEVSRR 73
Query: 126 ER-RDREKERERERDGERRSSSRSRRSS 152
R RD EK +ER RD +R R RSS
Sbjct: 74 SRDRDGEKSKERSRDKDRDHRERHHRSS 101
Score = 37.7 bits (86), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 8/74 (10%)
Query: 43 KREDSEEEEEEEKSRSGKRSR-RDEDEENGS---RRDRDRDRDRDKERHRRDRDRDRDRG 98
KRE + E E +S+ +R + RD+D E S RR RDRD ++ KER RD+DRD
Sbjct: 38 KRESRDHERETSRSKDREREKGRDKDRERDSEVSRRSRDRDGEKSKER---SRDKDRDH- 93
Query: 99 RERERETERDRERS 112
RER + R R+ S
Sbjct: 94 RERHHRSSRHRDHS 107
>sp|Q8L716|U2A2B_ARATH Splicing factor U2af large subunit B OS=Arabidopsis thaliana
GN=U2AF65B PE=2 SV=2
Length = 589
Score = 66.2 bits (160), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 73/149 (48%), Gaps = 20/149 (13%)
Query: 320 YRYIEFYDVMSVPMAIALSGQLLLGQPVMVK--------------PSEAEKNLVQSNTSA 365
+ ++E V A+AL G +L G PV V+ PS+ NL N A
Sbjct: 304 FAFVEMRSVEEASNAMALDGIILEGVPVKVRRPTDYNPSLAATLGPSQPNPNL---NLGA 360
Query: 366 GGTATGPYGAIDR--KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGF 423
G ++G G ++ +++VG L + TE Q+R+L E FGP+ L D ETG KG+ F
Sbjct: 361 VGLSSGSTGGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAF 420
Query: 424 VQFAQLEHAKAAQSALNGKLEIVGRTLKV 452
+ A +ALNG +++ +TL V
Sbjct: 421 CVYQDPSVTDIACAALNG-IKMGDKTLTV 448
>sp|Q2QZL4|U2A2B_ORYSJ Splicing factor U2af large subunit B OS=Oryza sativa subsp.
japonica GN=U2AF65B PE=2 SV=2
Length = 548
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 320 YRYIEFYDVMSVPMAIALSGQLLLGQPVMVK--------------PSEAEKNLVQSNTSA 365
+ ++E V A+AL G L G PV V+ PS+ NL N +A
Sbjct: 263 FAFVEMRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSPNL---NLAA 319
Query: 366 GGTATGPYGAIDR--KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGF 423
G G G ++ +++VG L + TE Q+R+L E FGP+ L D ETG KG+ F
Sbjct: 320 VGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAF 379
Query: 424 VQFAQLEHAKAAQSALNGKLEIVGRTLKV 452
+ L A +ALNG +++ +TL V
Sbjct: 380 CVYQDLNVTDIACAALNG-IKMGDKTLTV 407
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 12/80 (15%)
Query: 576 EIQGDVEEECSKYGRVKHIYVDK--------RSAGFVYLRFESTEAAASAQRAMHMRWFA 627
+I D+ E KYG + + + + G V+L + + A A+ AMH R F
Sbjct: 468 DIMEDMRLEAGKYGNLIKVVIPRPDPSGLPVAGVGKVFLEYADVDGATKAKTAMHGRKFG 527
Query: 628 RRLISAIFMKPEDYEAKFKS 647
+ A+F E KF S
Sbjct: 528 GNPVVAVFYP----ENKFSS 543
>sp|Q2R0Q1|U2A2A_ORYSJ Splicing factor U2af large subunit A OS=Oryza sativa subsp.
japonica GN=U2AF65A PE=2 SV=2
Length = 574
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 320 YRYIEFYDVMSVPMAIALSGQLLLGQPVMVK--------------PSEAEKNLVQSNTSA 365
+ ++E V A+AL G + G PV V+ PS+ NL N +A
Sbjct: 287 FAFVEMRSVEEASNAMALDGIMFEGAPVKVRRPTDYNPSLAAALGPSQPNPNL---NLAA 343
Query: 366 GGTATGPYGAIDR--KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGF 423
G G G ++ +++VG L + TE Q+R+L E FGP+ L D ETG KG+ F
Sbjct: 344 VGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAF 403
Query: 424 VQFAQLEHAKAAQSALNGKLEIVGRTLKV 452
+ L A +ALNG +++ +TL V
Sbjct: 404 CVYQDLNVTDIACAALNG-IKMGDKTLTV 431
Score = 38.5 bits (88), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 11/97 (11%)
Query: 553 PSECLLLKNMFDP-AMETDPDFDLEIQGDVEEECSKYGRVKHIYVDK--------RSAGF 603
P++ + L + P + D +++ +Q D+ EE +YG + + + + G
Sbjct: 471 PTKVVCLTQVVSPDELRDDEEYEDIVQ-DMREEGCRYGNLVKVVIPRPDPSGAPVAGVGR 529
Query: 604 VYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPED 640
V+L F E++ A+ MH R FA + A+F PED
Sbjct: 530 VFLEFADVESSTKAKNGMHGRKFANNQVVAVFY-PED 565
>sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia
GN=U2AF65B PE=2 SV=1
Length = 573
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 320 YRYIEFYDVMSVPMAIALSGQLLLGQPVMVK--------------PSEAEKNLVQSNTSA 365
+ ++E V A+AL G + G P V+ PS+ NL N +A
Sbjct: 288 FAFVEMRSVEEASNAMALDGIIFEGAPCKVRRPSDYNPSLAATLGPSQPNPNL---NLAA 344
Query: 366 GGTATGPYGAIDR--KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGF 423
G + G G ++ +++VG L + TE Q+R+L E FGP+ L D ETG KG+ F
Sbjct: 345 VGLSPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAF 404
Query: 424 VQFAQLEHAKAAQSALNGKLEIVGRTLKV 452
+ + A +ALNG +++ +TL V
Sbjct: 405 CVYQDVSVTDIACAALNG-IKMGDKTLTV 432
Score = 33.1 bits (74), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 11/76 (14%)
Query: 580 DVEEECSKYGRVKHIYVDKRS--------AGFVYLRFESTEAAASAQRAMHMRWFARRLI 631
D+ EC K+G + ++ + + S G V+L + ++++ A+++++ R F +
Sbjct: 497 DMRTECGKFGSLVNVVIPRPSPNGEPTPGVGKVFLEYADVDSSSKARQSLNGRKFGGNQV 556
Query: 632 SAIFMKPED--YEAKF 645
A+F PE+ YE +
Sbjct: 557 VAVFY-PENKFYEGDY 571
>sp|Q9ZR39|U2A2A_NICPL Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia
GN=U2AF65A PE=2 SV=1
Length = 555
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 20/149 (13%)
Query: 320 YRYIEFYDVMSVPMAIALSGQLLLGQPVMVK--------------PSEAEKNLVQSNTSA 365
+ ++E V A+AL G + G PV V+ PS+ NL N +A
Sbjct: 270 FAFVEMRSVEEASNAMALDGVIFEGGPVKVRRPSDYNPSLAATLGPSQPSPNL---NLAA 326
Query: 366 GGTATGPYGAIDR--KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGF 423
G+ G G ++ +++VG L + TE+Q+R+L E FG + L D ETG KG+ F
Sbjct: 327 VGSTPGSSGGLEGPDRIFVGGLPYYFTESQIRELLESFGQLRGFDLVKDRETGNSKGYAF 386
Query: 424 VQFAQLEHAKAAQSALNGKLEIVGRTLKV 452
+ + A +ALNG +++ +TL V
Sbjct: 387 CVYQDVSVTDIACAALNG-IKMGDKTLTV 414
>sp|Q8IDX6|RBP2A_PLAF7 Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum
(isolate 3D7) GN=PF13_0198 PE=3 SV=1
Length = 3130
Score = 57.4 bits (137), Expect = 3e-07, Method: Composition-based stats.
Identities = 48/218 (22%), Positives = 119/218 (54%), Gaps = 26/218 (11%)
Query: 5 EYEYLEKTVEEQRQQKQDDDSSSKKKAKREEKSERSYRKREDSEEEEEEEKSRSGKRSRR 64
E E LE+ +EQ +++++ +++ ++++K E R+ ++ ++EEE K + +R R
Sbjct: 2704 EKERLEREKQEQLKKEEELRKKEQERQEQQQKEEALKRQEQERLQKEEELKRQEQERLER 2763
Query: 65 DEDEENGSRRDRDRDRDRDKERHRRDRDRDRDRGRERERETERDRERSRERREKEKERER 124
++ E+ +++E R++++R ++ E + +E+ R ++E+E +R+
Sbjct: 2764 EKQEQ----------LQKEEELKRQEQER------LQKEEALKRQEQERLQKEEELKRQE 2807
Query: 125 RERRDREK--ERERERDGERRSSSRSRRSSSQSRRSSSRSRRERERESERERELELERER 182
+ER +REK + ++E + +R+ R ++ + R+ R ++E E + + + LE
Sbjct: 2808 QERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQKEEELKRQEQERLE----- 2862
Query: 183 ERERELRERERDLEMRESRRYKEKKEVVEPEADPERDQ 220
++ EL ERE+ + +S+ + ++++ E E+D+
Sbjct: 2863 RKKIELAEREQHI---KSKLESDMVKIIKDELTKEKDE 2897
Score = 48.5 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 39/179 (21%), Positives = 105/179 (58%), Gaps = 10/179 (5%)
Query: 47 SEEEEEEEKSRSGKRSRRDEDEENGSRRDRDRDRDRDKERHRRDRDRDRDRGRERERETE 106
+++EEE ++ ++ +++++ R +R++ KE R ++++R +++E +
Sbjct: 2686 AKQEEERKERERIEKEKQEKE-----RLEREKQEQLKKEEELRKKEQERQEQQQKEEALK 2740
Query: 107 RDRERSRERREKEKERERRERRDREKERERERDGERRSSSRSRRSSSQSRRSSSRSRRER 166
R +E+ R ++E+E +R+ +ER +REK+ + +++ E + + R ++ + + R ++
Sbjct: 2741 R-QEQERLQKEEELKRQEQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQK 2799
Query: 167 ERESERERELELERER----ERERELRERERDLEMRESRRYKEKKEVVEPEADPERDQR 221
E E +R+ + LERE+ ++E EL+ +E++ +E ++++E ++ E + +R ++
Sbjct: 2800 EEELKRQEQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQKEEELKRQEQ 2858
Score = 42.7 bits (99), Expect = 0.010, Method: Composition-based stats.
Identities = 35/148 (23%), Positives = 76/148 (51%), Gaps = 27/148 (18%)
Query: 1 MEFDEYEYLEKTVEEQRQQKQDDDSSSKKKAKREEKSERSYRKREDSEEEEEEEKSRSGK 60
+E ++ E L+K E +RQ+++ R +K E R+ ++ ++EEE K + +
Sbjct: 2761 LEREKQEQLQKEEELKRQEQE-----------RLQKEEALKRQEQERLQKEEELKRQEQE 2809
Query: 61 RSRRDEDEENGSRRDRDRDRDRDKERHRRDRDRDRDRGRERERETERDRERSRERREKEK 120
R R++ E+ +++E R++++ R ++ E + +E+ R ++E+E
Sbjct: 2810 RLEREKQEQ----------LQKEEELKRQEQE------RLQKEEALKRQEQERLQKEEEL 2853
Query: 121 ERERRERRDREKERERERDGERRSSSRS 148
+R+ +ER +R+K ER+ +S S
Sbjct: 2854 KRQEQERLERKKIELAEREQHIKSKLES 2881
Score = 39.3 bits (90), Expect = 0.10, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 81/143 (56%), Gaps = 13/143 (9%)
Query: 107 RDRER-SRERREKEKERERRERRDREKERERERDGERRSSSRSRRSSSQSRRSSSRSRRE 165
+++ER RE++E+ K+ E ++++E++ +++++ + + R + + + R E
Sbjct: 2703 QEKERLEREKQEQLKKEEELRKKEQERQEQQQKEEALKRQEQERLQKEEELKRQEQERLE 2762
Query: 166 RERESERERELELER-ERER----------ERELRERERDLEMRESRRY-KEKKEVVEPE 213
RE++ + ++E EL+R E+ER E+E ++E +L+ +E R +EK+E ++ E
Sbjct: 2763 REKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQKEEELKRQEQERLEREKQEQLQKE 2822
Query: 214 ADPERDQRTVFAYQMPLKATERD 236
+ +R ++ + LK E++
Sbjct: 2823 EELKRQEQERLQKEEALKRQEQE 2845
>sp|Q42404|RU17_ARATH U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana
GN=RNU1 PE=1 SV=1
Length = 427
Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 57/100 (57%), Gaps = 6/100 (6%)
Query: 354 AEKNLVQSNTSAGGTATG-PYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLD 412
A ++L + + + ATG PY + L+V L++ +E+++++ FE +GP++ V L D
Sbjct: 117 AAEDLKKYDPNNDPNATGDPY----KTLFVSRLNYESSESKIKREFESYGPIKRVHLVTD 172
Query: 413 IETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 452
T + KG+ F+++ KAA +G+ +I GR + V
Sbjct: 173 QLTNKPKGYAFIEYMHTRDMKAAYKQADGQ-KIDGRRVLV 211
>sp|Q6PGZ3|MIPT3_DANRE TRAF3-interacting protein 1 OS=Danio rerio GN=traf3ip1 PE=2 SV=1
Length = 629
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 47/67 (70%), Gaps = 10/67 (14%)
Query: 69 ENGSRRDRDRDRDRDKERHRRDRDRDRDRGRERERETERDRERSRERREKEKERERRERR 128
+ G R+R +DRDRDK++ RDR++D+ RE+ERE E+DR R EKERER + R
Sbjct: 201 DKGRERERTKDRDRDKDKS---RDREKDKTREKEREREKDRNR-------EKERERDKDR 250
Query: 129 DREKERE 135
D++KERE
Sbjct: 251 DKKKERE 257
Score = 42.7 bits (99), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 67/103 (65%), Gaps = 14/103 (13%)
Query: 52 EEEKSRSGKRSRRDEDE------ENGSRRDRDRDRDRDKERHRRDRDRDR-----DRGRE 100
+++++R G+ RD +E +GSR +D D+ +D+E R D+DR R D+GRE
Sbjct: 146 QDKENREGREHHRDREERKGIKESSGSREQKDPDQPKDQESKRDDKDRRRDAERSDKGRE 205
Query: 101 RERETERDRERSRER-REKEKERERRERRDREKERERERDGER 142
RER +RDR++ + R REK+K RE+ R+REK+R RE++ ER
Sbjct: 206 RERTKDRDRDKDKSRDREKDKTREKE--REREKDRNREKERER 246
>sp|P17133|RU17_DROME U1 small nuclear ribonucleoprotein 70 kDa OS=Drosophila
melanogaster GN=snRNP-U1-70K PE=1 SV=2
Length = 448
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 41/65 (63%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 437
R L++ ++++ +E++LR+ FE +GP++ + L D E+G+ KG+ F+++ AA
Sbjct: 102 RTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYK 161
Query: 438 ALNGK 442
+GK
Sbjct: 162 HADGK 166
>sp|Q66II8|RU17_XENTR U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis
GN=snrnp70 PE=2 SV=1
Length = 471
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 437
+ L+V ++++ TE++LR+ FE +GP++ + + + +G+ +G+ F+++ +A
Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYK 162
Query: 438 ALNGKLEIVGRTLKV 452
+GK +I GR + V
Sbjct: 163 HADGK-KIDGRRVLV 176
>sp|Q62376|RU17_MOUSE U1 small nuclear ribonucleoprotein 70 kDa OS=Mus musculus
GN=Snrnp70 PE=1 SV=2
Length = 448
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 437
+ L+V ++++ TE++LR+ FE +GP++ + + +G+ +G+ F+++ +A
Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYK 162
Query: 438 ALNGKLEIVGRTLKV 452
+GK +I GR + V
Sbjct: 163 HADGK-KIDGRRVLV 176
>sp|Q9VJ87|CWC22_DROME Pre-mRNA-splicing factor CWC22 homolog OS=Drosophila melanogaster
GN=ncm PE=1 SV=3
Length = 1330
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 67/137 (48%), Gaps = 23/137 (16%)
Query: 74 RDRDRDRDRDKERHRR-----DRDRDRDRGRERERETERDRERSRERREKEKERERRERR 128
R+R+R+ DKER R DR R RDR R ER T R+ RE+R + E+ RR
Sbjct: 1174 RERNRESSYDKERKNRNAVAHDRQRKRDRSRSYERPTIRENSAPREKRMESSRSEKDSRR 1233
Query: 129 -DREKERERERDGERRS----------------SSRSRRSSSQSRRSSSRSR-RERERES 170
DR ER GER S R RS R + R R +ERE
Sbjct: 1234 GDRSSRNERSDRGERSDRGERSDRGERSDRGERSDRGERSDRGERSDREKERSRAKERER 1293
Query: 171 ERERELELERERERERE 187
+R+R+L+ +RER+RER+
Sbjct: 1294 DRDRDLKGQRERKRERD 1310
Score = 34.3 bits (77), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 67/135 (49%), Gaps = 21/135 (15%)
Query: 13 VEEQRQQKQDDDSSSKKKAKREEKSERSYRKREDSEEEEEEEKSRSGK------RSRRDE 66
V RQ+K+D S ++ RE + R R E SRS K RS R+E
Sbjct: 1192 VAHDRQRKRDRSRSYERPTIRENSAPREKRM----------ESSRSEKDSRRGDRSSRNE 1241
Query: 67 DEENGSRRDRDRDRDRDKERHRRDRDRDRDRGRERERETERDRERSRER-REKEKERERR 125
+ G R DR DR + R DR DRG +R DRE+ R R +E+E++R+R
Sbjct: 1242 RSDRGERSDRGERSDRGE---RSDRGERSDRGERSDRGERSDREKERSRAKERERDRDRD 1298
Query: 126 ERRDREKERERERDG 140
+ RE++RER+ DG
Sbjct: 1299 LKGQRERKRERD-DG 1312
>sp|P08621|RU17_HUMAN U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens
GN=SNRNP70 PE=1 SV=2
Length = 437
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 437
+ L+V ++++ TE++LR+ FE +GP++ + + +G+ +G+ F+++ +A
Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYK 162
Query: 438 ALNGKLEIVGRTLKV 452
+GK +I GR + V
Sbjct: 163 HADGK-KIDGRRVLV 176
>sp|Q1RMR2|RU17_BOVIN U1 small nuclear ribonucleoprotein 70 kDa OS=Bos taurus GN=SNRNP70
PE=2 SV=1
Length = 439
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 437
+ L+V ++++ TE++LR+ FE +GP++ + + +G+ +G+ F+++ +A
Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYK 162
Query: 438 ALNGKLEIVGRTLKV 452
+GK +I GR + V
Sbjct: 163 HADGK-KIDGRRVLV 176
>sp|P09406|RU17_XENLA U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus laevis
GN=snrnp70 PE=2 SV=1
Length = 471
Score = 40.0 bits (92), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDI---ETGQCKGFGFVQFAQLEHAKA 434
+ L+V ++++ TE++LR+ FE +GP++ + + + +G+ +G+ F+++ +
Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHIVYNKGSEGSGKPRGYAFIEYEHERDMHS 162
Query: 435 AQSALNGKLEIVGRTLKV 452
A +GK +I GR + V
Sbjct: 163 AYKHADGK-KIDGRRVLV 179
>sp|Q5XIN3|MIPT3_RAT TRAF3-interacting protein 1 OS=Rattus norvegicus GN=Traf3ip1 PE=2
SV=1
Length = 653
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 18/168 (10%)
Query: 14 EEQRQQKQDDDSSSKKKAKREEKSERSYRKREDSEEEEEEEKSRSGKRSRRDEDEENGSR 73
EE R QK++ SS K+ + ++ +EDS+ E+E K + RD E
Sbjct: 157 EESRTQKEEKRSSEVKERSSSAEHKQKEELKEDSKPREKERDKEKAKEADRDRHREPDRD 216
Query: 74 RDRDRDRDRDKERHRRDRDRDRDR-----------------GRERERETERDRERSRER- 115
R+RD +R++ + R ++DRDR+ G+E+ER+ +RDR++ ++R
Sbjct: 217 RNRDGEREKARARAKQDRDRNNKDRDRETERDRDRDRRSDGGKEKERQKDRDRDKGKDRE 276
Query: 116 REKEKERERRERRDREKERERERDGERRSSSRSRRSSSQSRRSSSRSR 163
R K K E DREK R+ ++ ++ S SS + S RS+
Sbjct: 277 RRKSKNGEHTRDPDREKSRDADKSEKKADISVGASKSSTLKASKRRSK 324
Score = 35.4 bits (80), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 70/130 (53%), Gaps = 34/130 (26%)
Query: 36 KSERSYRKREDSEEEEEEEKSRSGKRSRRDEDEENGSRRDRDRDRDRDKERHRRDRDRDR 95
K E S ++E+ E +E+S S + +++E +E+ R+++RD+++ KE DR
Sbjct: 155 KEEESRTQKEEKRSSEVKERSSSAEHKQKEELKEDSKPREKERDKEKAKEA-------DR 207
Query: 96 DRGRE----RERETERDRERSRERREKE-----------------------KERERRERR 128
DR RE R R+ ER++ R+R +++++ KE+ER++ R
Sbjct: 208 DRHREPDRDRNRDGEREKARARAKQDRDRNNKDRDRETERDRDRDRRSDGGKEKERQKDR 267
Query: 129 DREKERERER 138
DR+K ++RER
Sbjct: 268 DRDKGKDRER 277
>sp|Q9BTC0|DIDO1_HUMAN Death-inducer obliterator 1 OS=Homo sapiens GN=DIDO1 PE=1 SV=5
Length = 2240
Score = 37.7 bits (86), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 47/109 (43%), Gaps = 41/109 (37%)
Query: 74 RDRDRDRDRDKERHRRDRDRDRDRGRERERETERDRERSRER------------------ 115
R+RD DR R+ +RHR D+D RD R RER RDRER +R
Sbjct: 2125 RERDWDRPREWDRHR-DKDSSRDWDRNRERSANRDREREADRGKEWDRSRERSRNRERER 2183
Query: 116 -------------------REKEKERERRERRDREKERERERDGERRSS 145
R++E+ R+R+DR K +E RD + +S
Sbjct: 2184 DRRRDRDRSRSRERDRDKARDRERG---RDRKDRSKSKESARDPKPEAS 2229
>sp|Q8SX83|SPEN_DROME Protein split ends OS=Drosophila melanogaster GN=spen PE=1 SV=2
Length = 5560
Score = 37.0 bits (84), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQL 429
R L++GNL ++T +LR FE FG E+++ +DI+ + F Q++ +
Sbjct: 656 RTLFIGNLEKDITAGELRSHFEAFG--EIIE--IDIKKQGLNAYAFCQYSDI 703
Score = 37.0 bits (84), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 38/119 (31%)
Query: 110 ERSRERREKE-KERERRERRDREKERERERDGERRSSSRSRRSSSQSRRSSSRSRRERER 168
++ +E REK+ +E+E+RER +REKE R++D RE+E
Sbjct: 2000 QKEKEIREKDLREKEQRERDNREKEL-RDKD-----------------------LREKEM 2035
Query: 169 ESERERELELERER-ERERELRERER-----DLE-------MRESRRYKEKKEVVEPEA 214
+ +RE EL RE+ +RERE RE+E+ D+E MRE Y++ K + EA
Sbjct: 2036 REKEQREKELHREKDQREREHREKEQSRRAMDVEQEGRGGRMRELSSYQKSKMDIAGEA 2094
Score = 33.9 bits (76), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 15/101 (14%)
Query: 92 DRDRDRGRERERETERDRERSRERREKE------KERERRERRDREKERERERDGERRSS 145
D+++ RE++ +R R+ REKE +E+E RE+ REKE RE+D +R
Sbjct: 1997 DKEQKEKEIREKDLREKEQRERDNREKELRDKDLREKEMREKEQREKELHREKD-QRE-- 2053
Query: 146 SRSRRSSSQSRRS-----SSRSRRERERESERERELELERE 181
R R QSRR+ R R RE S ++ ++++ E
Sbjct: 2054 -REHREKEQSRRAMDVEQEGRGGRMRELSSYQKSKMDIAGE 2093
>sp|Q8TDR0|MIPT3_HUMAN TRAF3-interacting protein 1 OS=Homo sapiens GN=TRAF3IP1 PE=1 SV=1
Length = 691
Score = 37.0 bits (84), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 55/98 (56%), Gaps = 18/98 (18%)
Query: 33 REEKSERSYRKREDSEEEEEEEKSRSGKRSRRDEDEE----------------NGSRRDR 76
REE+S R ++ ED + E +E+S S R +++E +E NG R R
Sbjct: 155 REEES-RVHKNTEDRGDAEIKERSTSRDRKQKEELKEDRKPREKDKDKEKAKENGGNRHR 213
Query: 77 DRDRDRDKERHRRDRDRDRDRG-RERERETERDRERSR 113
+ +R+R K R R D +R +DRG RER+R++ER +E R
Sbjct: 214 EGERERAKARARPDNERQKDRGNRERDRDSERKKETER 251
>sp|Q8C761|WDR60_MOUSE WD repeat-containing protein 60 OS=Mus musculus GN=Wdr60 PE=2 SV=1
Length = 999
Score = 34.7 bits (78), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 54/105 (51%), Gaps = 11/105 (10%)
Query: 73 RRDRDRDRDRDKERHRRDRDRDRDRGRERERETERDRERSRERREKEKERER---RER-R 128
R + RD DR+ + +RD E R ERDRER +ERR+ K+RE+ +ER R
Sbjct: 52 REHKSRDPDREARHKEKTAERDLYTSTEHPR-GERDRERHKERRKDAKDREKDKLKERHR 110
Query: 129 DREKER------ERERDGERRSSSRSRRSSSQSRRSSSRSRRERE 167
D+E E+ +RER+ +RR+ R S SR R R+
Sbjct: 111 DQEAEKAHSRGKDREREKDRRARKEEIRQSMAYHDLLSRDMRGRQ 155
Score = 33.1 bits (74), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 54/99 (54%), Gaps = 7/99 (7%)
Query: 24 DSSSKKKAKREEKS---ERSYRKREDSEEEEEEEKSRSGKRSRRDEDEENGSRRD-RDRD 79
DS S RE KS +R R +E + E + S R RD + R+D +DR+
Sbjct: 43 DSESAAPEYREHKSRDPDREARHKEKTAERDLY-TSTEHPRGERDRERHKERRKDAKDRE 101
Query: 80 RDRDKERHR-RDRDRDRDRGRERERETERDRERSRERRE 117
+D+ KERHR ++ ++ RG++RERE +R R R E R+
Sbjct: 102 KDKLKERHRDQEAEKAHSRGKDREREKDR-RARKEEIRQ 139
>sp|Q6P7Y3|PR38B_DANRE Pre-mRNA-splicing factor 38B OS=Danio rerio GN=prpf38b PE=2 SV=1
Length = 501
Score = 33.9 bits (76), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 7/54 (12%)
Query: 76 RDRDRDRDKERHRRDRDRDRDRGRERERETERDRERSRERREKEKERERRERRD 129
+DRD+DR+ E +R+R R+++RE +DRERS+++R K + ERR + D
Sbjct: 351 KDRDKDREAE-------SERERSRKKDREHHKDRERSKDKRSKGEGEERRHKDD 397
>sp|Q5RC67|DDX23_PONAB Probable ATP-dependent RNA helicase DDX23 OS=Pongo abelii GN=DDX23
PE=2 SV=1
Length = 820
Score = 32.7 bits (73), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 6/47 (12%)
Query: 74 RDRDR-DRDRDKERHRRDRDRDRD-----RGRERERETERDRERSRE 114
RDR++ DRDRDK+ HRRD+DR R RG++ + +RD ++ E
Sbjct: 83 RDRNKKDRDRDKDGHRRDKDRKRSSLSPGRGKDFKSRKDRDSKKDEE 129
>sp|Q9BUQ8|DDX23_HUMAN Probable ATP-dependent RNA helicase DDX23 OS=Homo sapiens GN=DDX23
PE=1 SV=3
Length = 820
Score = 32.7 bits (73), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 6/47 (12%)
Query: 74 RDRDR-DRDRDKERHRRDRDRDRD-----RGRERERETERDRERSRE 114
RDR++ DRDRDK+ HRRD+DR R RG++ + +RD ++ E
Sbjct: 83 RDRNKKDRDRDKDGHRRDKDRKRSSLSPGRGKDFKSRKDRDSKKDEE 129
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 232,917,124
Number of Sequences: 539616
Number of extensions: 10850985
Number of successful extensions: 345510
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 4538
Number of HSP's successfully gapped in prelim test: 3797
Number of HSP's that attempted gapping in prelim test: 93882
Number of HSP's gapped (non-prelim): 90225
length of query: 647
length of database: 191,569,459
effective HSP length: 124
effective length of query: 523
effective length of database: 124,657,075
effective search space: 65195650225
effective search space used: 65195650225
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 65 (29.6 bits)