Query 006380
Match_columns 647
No_of_seqs 395 out of 3263
Neff 9.5
Searched_HMMs 46136
Date Thu Mar 28 22:26:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006380.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006380hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01622 SF-CC1 splicing fact 100.0 3.4E-52 7.4E-57 450.8 38.5 368 215-647 84-456 (457)
2 KOG0147 Transcriptional coacti 100.0 1.6E-52 3.5E-57 419.6 25.0 372 206-647 165-536 (549)
3 TIGR01642 U2AF_lg U2 snRNP aux 100.0 7.2E-48 1.6E-52 423.0 25.8 308 217-643 172-506 (509)
4 TIGR01645 half-pint poly-U bin 100.0 4.1E-39 8.9E-44 342.1 32.9 179 219-459 106-285 (612)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.1E-39 4.6E-44 339.2 29.2 330 220-641 3-351 (352)
6 TIGR01628 PABP-1234 polyadenyl 100.0 1.2E-38 2.6E-43 352.7 27.5 324 222-640 2-365 (562)
7 KOG0117 Heterogeneous nuclear 100.0 3.1E-36 6.8E-41 293.8 21.1 251 218-644 81-336 (506)
8 TIGR01648 hnRNP-R-Q heterogene 100.0 8.5E-35 1.8E-39 309.2 27.8 244 219-639 57-307 (578)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 9.1E-34 2E-38 305.4 32.7 336 219-639 1-351 (481)
10 KOG0145 RNA-binding protein EL 100.0 1.9E-34 4.1E-39 261.6 21.1 305 220-639 41-358 (360)
11 KOG0124 Polypyrimidine tract-b 100.0 2.1E-33 4.6E-38 266.2 21.4 353 220-643 113-539 (544)
12 KOG0120 Splicing factor U2AF, 100.0 1.9E-33 4.1E-38 287.7 15.8 313 217-646 172-499 (500)
13 KOG0144 RNA-binding protein CU 100.0 4.1E-32 8.9E-37 263.7 22.6 177 212-460 26-208 (510)
14 KOG0127 Nucleolar protein fibr 100.0 2.4E-31 5.1E-36 265.3 25.5 337 221-640 6-379 (678)
15 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 5.4E-31 1.2E-35 283.9 28.7 289 221-638 97-479 (481)
16 KOG0148 Apoptosis-promoting RN 100.0 3.1E-31 6.7E-36 242.8 20.3 235 218-639 4-238 (321)
17 KOG0123 Polyadenylate-binding 100.0 6.9E-29 1.5E-33 253.1 17.3 320 222-641 3-351 (369)
18 TIGR01622 SF-CC1 splicing fact 99.9 3.2E-26 7E-31 247.9 24.0 171 378-638 90-265 (457)
19 TIGR01659 sex-lethal sex-letha 99.9 2.8E-26 6E-31 233.1 18.2 169 217-458 104-275 (346)
20 TIGR01659 sex-lethal sex-letha 99.9 9.2E-26 2E-30 229.3 21.0 167 373-640 103-276 (346)
21 TIGR01642 U2AF_lg U2 snRNP aux 99.9 7.7E-26 1.7E-30 248.6 21.6 184 376-638 174-374 (509)
22 TIGR01628 PABP-1234 polyadenyl 99.9 1.6E-25 3.5E-30 248.0 21.2 214 315-639 39-261 (562)
23 TIGR01645 half-pint poly-U bin 99.9 2.1E-24 4.5E-29 230.2 20.4 172 377-638 107-283 (612)
24 KOG0148 Apoptosis-promoting RN 99.9 1.9E-24 4.2E-29 198.3 14.3 180 218-460 60-240 (321)
25 KOG0110 RNA-binding protein (R 99.9 1.6E-23 3.6E-28 216.8 20.5 271 217-641 382-695 (725)
26 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 1.5E-23 3.2E-28 219.5 19.0 184 219-459 88-350 (352)
27 KOG0127 Nucleolar protein fibr 99.9 2.1E-24 4.6E-29 215.9 11.3 183 220-459 117-379 (678)
28 KOG4212 RNA-binding protein hn 99.9 1.7E-21 3.7E-26 189.8 24.3 185 211-454 35-290 (608)
29 KOG0144 RNA-binding protein CU 99.9 9E-23 1.9E-27 199.0 12.6 167 375-640 32-207 (510)
30 KOG0131 Splicing factor 3b, su 99.9 1.5E-22 3.2E-27 175.5 9.5 169 219-459 8-178 (203)
31 KOG0147 Transcriptional coacti 99.9 1.9E-22 4.2E-27 203.6 9.9 175 220-456 278-526 (549)
32 KOG0123 Polyadenylate-binding 99.9 2.4E-21 5.2E-26 197.9 15.7 205 317-638 36-245 (369)
33 KOG1190 Polypyrimidine tract-b 99.9 1.5E-20 3.3E-25 182.2 19.0 339 218-637 26-371 (492)
34 KOG0145 RNA-binding protein EL 99.9 9.1E-21 2E-25 172.9 15.2 162 375-637 39-207 (360)
35 TIGR01648 hnRNP-R-Q heterogene 99.9 2.4E-20 5.1E-25 199.2 20.2 195 327-640 18-223 (578)
36 KOG0131 Splicing factor 3b, su 99.8 9.7E-21 2.1E-25 164.3 11.5 161 378-638 10-176 (203)
37 KOG1548 Transcription elongati 99.8 2.8E-19 6E-24 170.4 20.5 209 376-638 133-351 (382)
38 KOG1456 Heterogeneous nuclear 99.8 2.2E-18 4.7E-23 165.2 26.2 321 217-638 28-362 (494)
39 KOG0117 Heterogeneous nuclear 99.8 2.5E-19 5.5E-24 176.0 17.2 159 375-640 81-249 (506)
40 KOG0146 RNA-binding protein ET 99.8 8.9E-20 1.9E-24 167.1 12.1 250 377-640 19-366 (371)
41 KOG1190 Polypyrimidine tract-b 99.8 8.1E-18 1.8E-22 163.4 21.9 321 221-636 151-488 (492)
42 KOG0124 Polypyrimidine tract-b 99.8 5.7E-19 1.2E-23 168.5 13.0 167 378-634 114-285 (544)
43 KOG0109 RNA-binding protein LA 99.8 2.9E-19 6.4E-24 166.1 10.6 146 378-637 3-148 (346)
44 KOG4206 Spliceosomal protein s 99.8 7.7E-18 1.7E-22 152.9 17.9 206 378-637 10-220 (221)
45 KOG0109 RNA-binding protein LA 99.8 1.5E-18 3.3E-23 161.4 8.8 147 221-458 3-150 (346)
46 KOG0110 RNA-binding protein (R 99.8 1.6E-18 3.6E-23 180.0 10.0 175 223-461 518-696 (725)
47 KOG4205 RNA-binding protein mu 99.7 1.2E-17 2.6E-22 164.2 11.2 179 219-465 5-183 (311)
48 KOG4211 Splicing factor hnRNP- 99.7 8.9E-16 1.9E-20 153.6 19.9 172 219-457 9-181 (510)
49 KOG1365 RNA-binding protein Fu 99.6 5.1E-15 1.1E-19 142.8 17.0 301 215-643 55-366 (508)
50 KOG0146 RNA-binding protein ET 99.6 3E-15 6.5E-20 137.6 10.0 83 375-458 283-365 (371)
51 KOG4206 Spliceosomal protein s 99.6 2.5E-14 5.4E-19 130.3 15.8 174 218-456 7-220 (221)
52 PLN03134 glycine-rich RNA-bind 99.6 1.8E-14 3.9E-19 128.1 12.5 82 376-458 33-114 (144)
53 KOG0120 Splicing factor U2AF, 99.6 4.3E-15 9.3E-20 153.3 9.3 182 219-457 288-491 (500)
54 KOG1457 RNA binding protein (c 99.6 7.6E-14 1.7E-18 125.3 15.7 232 378-627 35-274 (284)
55 KOG0105 Alternative splicing f 99.6 1.9E-13 4.1E-18 119.1 16.7 181 377-637 6-188 (241)
56 KOG1456 Heterogeneous nuclear 99.5 2.6E-12 5.7E-17 123.9 23.3 342 217-640 117-492 (494)
57 KOG4205 RNA-binding protein mu 99.5 2.9E-14 6.3E-19 140.5 10.1 170 377-643 6-180 (311)
58 KOG0105 Alternative splicing f 99.5 9.5E-13 2.1E-17 114.8 14.9 171 218-454 4-186 (241)
59 KOG0106 Alternative splicing f 99.5 1.5E-13 3.2E-18 126.8 8.8 168 378-637 2-169 (216)
60 KOG1548 Transcription elongati 99.4 2.8E-12 6E-17 123.0 15.3 188 218-459 132-353 (382)
61 PLN03134 glycine-rich RNA-bind 99.4 1.6E-12 3.6E-17 115.6 10.3 79 552-640 32-115 (144)
62 KOG4212 RNA-binding protein hn 99.4 1.4E-11 3E-16 121.3 17.5 239 377-635 44-290 (608)
63 PF00076 RRM_1: RNA recognitio 99.4 2.1E-12 4.5E-17 100.6 9.7 70 380-451 1-70 (70)
64 KOG0121 Nuclear cap-binding pr 99.4 1.4E-12 3.1E-17 106.8 6.9 78 378-456 37-114 (153)
65 KOG4211 Splicing factor hnRNP- 99.4 2.7E-11 5.8E-16 121.9 17.0 169 378-641 11-184 (510)
66 KOG0122 Translation initiation 99.3 3.3E-12 7.2E-17 116.8 8.8 81 377-458 189-269 (270)
67 PF14259 RRM_6: RNA recognitio 99.3 1E-11 2.2E-16 96.7 10.4 70 380-451 1-70 (70)
68 KOG0106 Alternative splicing f 99.3 1.8E-12 3.9E-17 119.7 6.9 161 221-454 2-167 (216)
69 KOG0126 Predicted RNA-binding 99.3 2.8E-13 6.1E-18 117.9 0.7 81 378-459 36-116 (219)
70 KOG0113 U1 small nuclear ribon 99.3 6.5E-12 1.4E-16 118.1 9.7 87 370-457 94-180 (335)
71 KOG4307 RNA binding protein RB 99.3 9.8E-11 2.1E-15 121.6 18.4 181 219-458 310-514 (944)
72 PF00076 RRM_1: RNA recognitio 99.3 8.1E-12 1.8E-16 97.2 7.8 66 557-632 1-70 (70)
73 KOG4207 Predicted splicing fac 99.3 4.9E-12 1.1E-16 112.5 7.1 81 378-459 14-94 (256)
74 PF13893 RRM_5: RNA recognitio 99.3 1.4E-11 2.9E-16 91.1 8.4 56 581-636 1-56 (56)
75 KOG0125 Ataxin 2-binding prote 99.3 1.2E-11 2.7E-16 117.7 9.9 81 554-644 96-179 (376)
76 KOG0114 Predicted RNA-binding 99.3 1.9E-11 4E-16 96.4 8.7 82 552-643 16-99 (124)
77 KOG0114 Predicted RNA-binding 99.3 3E-11 6.5E-16 95.2 9.6 77 377-457 18-94 (124)
78 KOG0107 Alternative splicing f 99.3 1E-11 2.2E-16 107.9 7.4 76 377-458 10-85 (195)
79 KOG0125 Ataxin 2-binding prote 99.2 2.5E-11 5.4E-16 115.7 9.3 78 378-458 97-174 (376)
80 PLN03120 nucleic acid binding 99.2 4.6E-11 1E-15 113.5 10.4 77 378-459 5-81 (260)
81 KOG0107 Alternative splicing f 99.2 2.6E-11 5.6E-16 105.4 7.8 75 554-638 10-84 (195)
82 KOG0149 Predicted RNA-binding 99.2 1.5E-11 3.3E-16 112.3 6.0 78 377-456 12-89 (247)
83 KOG0130 RNA-binding protein RB 99.2 3.6E-11 7.8E-16 99.4 7.1 81 377-458 72-152 (170)
84 KOG1457 RNA binding protein (c 99.2 1.2E-10 2.7E-15 104.9 10.9 62 377-442 210-271 (284)
85 PLN03120 nucleic acid binding 99.2 9.6E-11 2.1E-15 111.3 9.9 73 554-637 4-78 (260)
86 PF14259 RRM_6: RNA recognitio 99.2 1.1E-10 2.3E-15 90.9 7.9 66 557-632 1-70 (70)
87 KOG0149 Predicted RNA-binding 99.2 9.3E-11 2E-15 107.2 8.4 81 218-354 10-90 (247)
88 KOG0126 Predicted RNA-binding 99.1 5.3E-12 1.2E-16 110.0 -0.3 79 218-352 33-112 (219)
89 PLN03121 nucleic acid binding 99.1 2.4E-10 5.3E-15 106.6 10.5 78 378-460 6-83 (243)
90 COG0724 RNA-binding proteins ( 99.1 2.4E-10 5.2E-15 115.8 11.1 161 220-436 115-284 (306)
91 PLN03213 repressor of silencin 99.1 1.6E-10 3.4E-15 115.5 9.1 77 377-458 10-88 (759)
92 KOG0121 Nuclear cap-binding pr 99.1 9.8E-11 2.1E-15 96.1 6.3 79 218-352 34-113 (153)
93 KOG0122 Translation initiation 99.1 1.8E-10 3.9E-15 105.6 8.4 77 553-639 188-269 (270)
94 smart00362 RRM_2 RNA recogniti 99.1 4.5E-10 9.7E-15 87.5 9.1 71 379-452 1-71 (72)
95 COG0724 RNA-binding proteins ( 99.1 1E-09 2.2E-14 111.1 13.5 80 377-457 115-194 (306)
96 KOG4207 Predicted splicing fac 99.1 1.3E-10 2.8E-15 103.6 5.8 73 555-637 14-91 (256)
97 KOG0111 Cyclophilin-type pepti 99.1 7E-11 1.5E-15 106.0 4.1 82 378-460 11-92 (298)
98 KOG0108 mRNA cleavage and poly 99.1 3.7E-10 8E-15 116.7 8.6 81 378-459 19-99 (435)
99 smart00360 RRM RNA recognition 99.1 5.8E-10 1.3E-14 86.5 7.9 71 382-453 1-71 (71)
100 smart00362 RRM_2 RNA recogniti 99.1 9.5E-10 2.1E-14 85.6 9.0 69 556-634 1-72 (72)
101 PLN03213 repressor of silencin 99.0 1E-09 2.2E-14 109.9 9.8 81 551-641 7-90 (759)
102 cd00590 RRM RRM (RNA recogniti 99.0 2.4E-09 5.2E-14 83.8 9.7 74 379-454 1-74 (74)
103 KOG1365 RNA-binding protein Fu 99.0 3.9E-09 8.4E-14 102.7 12.2 179 219-456 160-360 (508)
104 PF13893 RRM_5: RNA recognitio 99.0 2.3E-09 4.9E-14 79.1 8.3 56 394-455 1-56 (56)
105 PLN03121 nucleic acid binding 99.0 7.6E-10 1.6E-14 103.4 6.7 76 219-353 4-79 (243)
106 smart00361 RRM_1 RNA recogniti 99.0 1.4E-09 3E-14 84.2 6.9 57 578-634 6-70 (70)
107 KOG0130 RNA-binding protein RB 99.0 1E-09 2.2E-14 90.9 6.2 72 555-636 73-149 (170)
108 KOG4307 RNA binding protein RB 99.0 1.5E-08 3.2E-13 105.8 15.7 201 377-641 311-516 (944)
109 smart00361 RRM_1 RNA recogniti 99.0 2.7E-09 5.9E-14 82.6 7.7 61 391-452 2-69 (70)
110 cd00590 RRM RRM (RNA recogniti 99.0 4.5E-09 9.7E-14 82.2 9.2 70 556-635 1-74 (74)
111 KOG1996 mRNA splicing factor [ 98.9 9.4E-10 2E-14 103.1 5.8 92 548-644 275-372 (378)
112 KOG0132 RNA polymerase II C-te 98.9 1.8E-09 3.8E-14 114.2 8.2 75 217-353 418-493 (894)
113 smart00360 RRM RNA recognition 98.9 4.5E-09 9.7E-14 81.4 7.9 66 559-634 1-71 (71)
114 KOG0113 U1 small nuclear ribon 98.9 2.5E-09 5.4E-14 101.0 7.1 82 215-352 96-178 (335)
115 KOG4660 Protein Mei2, essentia 98.9 3.6E-08 7.7E-13 101.4 15.7 175 213-457 68-249 (549)
116 KOG0111 Cyclophilin-type pepti 98.9 6E-10 1.3E-14 100.1 2.1 83 218-356 8-91 (298)
117 KOG0128 RNA-binding protein SA 98.9 2.4E-10 5.3E-15 122.2 -1.5 239 220-638 571-814 (881)
118 KOG4676 Splicing factor, argin 98.8 3.8E-09 8.1E-14 103.1 5.5 215 378-640 8-227 (479)
119 KOG0415 Predicted peptidyl pro 98.8 7.6E-09 1.6E-13 99.6 7.0 85 372-457 234-318 (479)
120 KOG0108 mRNA cleavage and poly 98.8 5.8E-09 1.3E-13 108.0 6.1 79 221-355 19-98 (435)
121 KOG0132 RNA polymerase II C-te 98.8 1.8E-08 3.8E-13 106.8 8.4 77 378-461 422-498 (894)
122 KOG4210 Nuclear localization s 98.8 1.3E-08 2.9E-13 100.7 6.8 180 218-460 86-266 (285)
123 KOG4208 Nucleolar RNA-binding 98.7 3.2E-08 6.9E-13 89.1 8.2 84 374-458 46-130 (214)
124 KOG4208 Nucleolar RNA-binding 98.7 3.9E-08 8.4E-13 88.6 7.9 78 552-639 47-130 (214)
125 KOG0128 RNA-binding protein SA 98.7 3E-09 6.6E-14 114.0 -0.1 150 218-457 665-814 (881)
126 KOG4454 RNA binding protein (R 98.6 1.6E-08 3.5E-13 91.2 2.4 144 218-450 7-155 (267)
127 KOG0112 Large RNA-binding prot 98.6 2.6E-08 5.7E-13 107.3 4.3 156 377-637 372-529 (975)
128 KOG0129 Predicted RNA-binding 98.6 3E-07 6.4E-12 93.9 10.8 169 217-438 256-432 (520)
129 KOG2193 IGF-II mRNA-binding pr 98.5 8.5E-09 1.8E-13 101.5 -1.5 157 378-643 2-161 (584)
130 KOG0112 Large RNA-binding prot 98.5 1.1E-07 2.5E-12 102.6 5.9 161 217-459 369-532 (975)
131 KOG0153 Predicted RNA-binding 98.5 5.5E-07 1.2E-11 87.3 9.8 80 372-457 223-302 (377)
132 KOG0129 Predicted RNA-binding 98.5 2.5E-06 5.4E-11 87.4 14.8 161 377-620 259-432 (520)
133 KOG0415 Predicted peptidyl pro 98.5 2E-07 4.3E-12 90.0 5.7 77 550-636 235-316 (479)
134 KOG4660 Protein Mei2, essentia 98.5 1.2E-07 2.6E-12 97.7 4.4 72 374-451 72-143 (549)
135 KOG0151 Predicted splicing reg 98.4 1.5E-06 3.2E-11 91.6 9.6 89 368-457 165-256 (877)
136 KOG0533 RRM motif-containing p 98.3 1.6E-06 3.4E-11 82.7 8.0 81 378-460 84-164 (243)
137 PF11608 Limkain-b1: Limkain b 98.3 3E-06 6.4E-11 65.0 7.9 72 556-638 4-76 (90)
138 KOG4676 Splicing factor, argin 98.3 1.3E-07 2.8E-12 92.6 0.6 198 220-442 7-211 (479)
139 KOG0153 Predicted RNA-binding 98.3 3E-06 6.6E-11 82.3 8.1 75 553-638 227-302 (377)
140 KOG4210 Nuclear localization s 98.2 1.1E-06 2.4E-11 87.1 5.3 172 377-639 88-264 (285)
141 KOG4661 Hsp27-ERE-TATA-binding 98.2 2.2E-06 4.7E-11 87.9 7.3 82 377-459 405-486 (940)
142 PF04059 RRM_2: RNA recognitio 98.2 7.2E-06 1.6E-10 66.6 8.9 78 378-456 2-85 (97)
143 KOG4454 RNA binding protein (R 98.2 6.2E-07 1.3E-11 81.2 2.4 78 376-456 8-85 (267)
144 KOG0226 RNA-binding proteins [ 98.1 3.2E-06 6.8E-11 78.6 4.7 140 306-456 128-268 (290)
145 KOG0533 RRM motif-containing p 98.1 1.4E-05 3E-10 76.3 8.1 78 554-641 83-164 (243)
146 KOG2202 U2 snRNP splicing fact 98.0 2.8E-06 6.1E-11 79.5 3.0 68 576-643 80-152 (260)
147 KOG4661 Hsp27-ERE-TATA-binding 98.0 5.6E-06 1.2E-10 84.9 4.9 80 217-352 402-482 (940)
148 KOG4209 Splicing factor RNPS1, 98.0 9.5E-06 2.1E-10 77.7 6.0 78 378-457 102-179 (231)
149 KOG4209 Splicing factor RNPS1, 97.9 7.5E-06 1.6E-10 78.4 4.0 82 215-352 96-177 (231)
150 KOG0116 RasGAP SH3 binding pro 97.9 1.4E-05 3.1E-10 82.6 5.9 78 378-457 289-366 (419)
151 PF08777 RRM_3: RNA binding mo 97.9 4.6E-05 1E-09 63.6 6.9 75 555-640 2-81 (105)
152 PF08952 DUF1866: Domain of un 97.8 0.00016 3.6E-09 62.6 9.3 85 551-640 24-108 (146)
153 KOG0226 RNA-binding proteins [ 97.8 2.8E-05 6E-10 72.5 4.7 69 556-634 192-265 (290)
154 KOG0151 Predicted splicing reg 97.7 4.8E-05 1.1E-09 80.5 5.7 81 217-353 171-255 (877)
155 PF11608 Limkain-b1: Limkain b 97.6 0.00015 3.3E-09 55.8 6.0 68 378-456 3-75 (90)
156 PF04059 RRM_2: RNA recognitio 97.6 0.00034 7.4E-09 56.9 8.2 76 555-640 2-88 (97)
157 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00026 5.6E-09 58.0 7.5 72 554-637 6-90 (100)
158 KOG0116 RasGAP SH3 binding pro 97.6 0.00013 2.9E-09 75.5 6.5 79 216-350 284-362 (419)
159 KOG2314 Translation initiation 97.5 0.00031 6.7E-09 72.8 8.3 83 554-640 58-145 (698)
160 KOG2416 Acinus (induces apopto 97.5 0.0001 2.2E-09 76.6 4.5 84 550-644 440-527 (718)
161 KOG4849 mRNA cleavage factor I 97.5 0.00053 1.2E-08 66.7 8.7 80 377-457 80-161 (498)
162 KOG2193 IGF-II mRNA-binding pr 97.4 2.1E-05 4.6E-10 78.1 -1.7 120 319-460 38-159 (584)
163 COG5175 MOT2 Transcriptional r 97.4 0.0013 2.9E-08 63.7 9.9 80 378-458 115-203 (480)
164 KOG1995 Conserved Zn-finger pr 97.3 0.00025 5.3E-09 70.0 5.0 83 377-460 66-156 (351)
165 PF08777 RRM_3: RNA binding mo 97.3 0.0007 1.5E-08 56.5 6.6 71 378-454 2-76 (105)
166 COG5175 MOT2 Transcriptional r 97.3 0.0008 1.7E-08 65.2 7.2 82 554-639 114-203 (480)
167 PF14605 Nup35_RRM_2: Nup53/35 97.2 0.00093 2E-08 48.0 5.7 52 555-618 2-53 (53)
168 KOG1855 Predicted RNA-binding 96.9 0.0011 2.4E-08 66.6 4.9 63 552-624 229-309 (484)
169 KOG1996 mRNA splicing factor [ 96.8 0.0026 5.7E-08 60.7 6.1 78 378-456 282-365 (378)
170 KOG2314 Translation initiation 96.8 0.005 1.1E-07 64.1 8.5 79 377-457 58-143 (698)
171 KOG2202 U2 snRNP splicing fact 96.8 0.00057 1.2E-08 64.4 1.6 64 392-457 83-147 (260)
172 KOG1995 Conserved Zn-finger pr 96.7 0.0018 3.8E-08 64.1 4.4 83 217-355 63-154 (351)
173 KOG3152 TBP-binding protein, a 96.4 0.0017 3.8E-08 60.9 2.3 68 553-630 73-157 (278)
174 KOG2416 Acinus (induces apopto 96.3 0.0041 9E-08 65.1 4.4 78 373-457 440-521 (718)
175 PF14605 Nup35_RRM_2: Nup53/35 96.3 0.0091 2E-07 42.9 4.8 52 378-436 2-53 (53)
176 KOG3152 TBP-binding protein, a 96.1 0.0046 9.9E-08 58.2 3.4 71 378-449 75-157 (278)
177 PF08952 DUF1866: Domain of un 96.1 0.028 6.2E-07 49.0 8.0 77 372-458 22-107 (146)
178 PF05172 Nup35_RRM: Nup53/35/4 96.0 0.022 4.9E-07 46.7 6.4 76 378-456 7-90 (100)
179 KOG0115 RNA-binding protein p5 95.9 0.0079 1.7E-07 56.7 3.6 102 331-456 7-112 (275)
180 PF15519 RBM39linker: linker b 95.8 0.0048 1E-07 47.4 1.7 26 472-497 4-29 (73)
181 KOG1855 Predicted RNA-binding 95.4 0.018 3.8E-07 58.3 4.5 66 376-441 230-308 (484)
182 PF15023 DUF4523: Protein of u 95.3 0.082 1.8E-06 45.3 7.3 54 579-635 105-158 (166)
183 PF08675 RNA_bind: RNA binding 94.9 0.14 3E-06 39.8 7.0 56 553-622 8-63 (87)
184 PF08675 RNA_bind: RNA binding 94.6 0.18 3.8E-06 39.3 6.8 55 378-441 10-64 (87)
185 KOG4849 mRNA cleavage factor I 94.2 0.041 8.8E-07 54.0 3.2 50 219-268 79-130 (498)
186 KOG0796 Spliceosome subunit [R 94.0 0.045 9.7E-07 53.8 3.2 16 5-20 216-231 (319)
187 KOG4285 Mitotic phosphoprotein 94.0 0.15 3.3E-06 49.3 6.6 66 554-632 197-262 (350)
188 PF15023 DUF4523: Protein of u 93.9 0.22 4.7E-06 42.8 6.7 74 374-456 83-160 (166)
189 PF07576 BRAP2: BRCA1-associat 93.8 1.1 2.5E-05 37.5 10.8 76 378-456 14-93 (110)
190 PF04847 Calcipressin: Calcipr 93.6 0.19 4.1E-06 46.5 6.5 61 578-639 9-71 (184)
191 PF03467 Smg4_UPF3: Smg-4/UPF3 93.5 0.24 5.1E-06 45.7 6.9 79 378-456 8-96 (176)
192 KOG2135 Proteins containing th 93.3 0.17 3.7E-06 52.1 6.1 73 555-638 373-445 (526)
193 PF10309 DUF2414: Protein of u 93.2 0.37 7.9E-06 35.6 6.0 54 378-439 6-62 (62)
194 PF07576 BRAP2: BRCA1-associat 93.1 1.1 2.4E-05 37.6 9.7 75 554-638 13-94 (110)
195 KOG0115 RNA-binding protein p5 92.4 0.33 7.1E-06 46.1 6.2 57 556-622 33-93 (275)
196 PF10309 DUF2414: Protein of u 92.4 0.63 1.4E-05 34.4 6.3 54 555-621 6-62 (62)
197 KOG0670 U4/U6-associated splic 92.0 0.13 2.7E-06 54.2 3.2 8 395-402 521-528 (752)
198 KOG2068 MOT2 transcription fac 91.6 0.083 1.8E-06 52.3 1.4 81 378-459 78-164 (327)
199 KOG4574 RNA-binding protein (c 91.5 0.28 6E-06 54.2 5.3 63 578-641 312-376 (1007)
200 KOG2253 U1 snRNP complex, subu 90.0 0.45 9.8E-06 51.3 5.1 69 552-634 38-106 (668)
201 KOG2068 MOT2 transcription fac 90.0 0.12 2.5E-06 51.3 0.7 77 556-639 79-163 (327)
202 KOG4285 Mitotic phosphoprotein 89.3 1.3 2.9E-05 43.1 7.1 75 378-461 198-273 (350)
203 PF11767 SET_assoc: Histone ly 89.1 1.8 3.8E-05 32.6 6.2 55 388-452 11-65 (66)
204 KOG4246 Predicted DNA-binding 88.6 0.22 4.9E-06 54.6 1.7 6 557-562 904-909 (1194)
205 KOG2318 Uncharacterized conser 87.6 2.2 4.8E-05 45.4 8.1 81 550-639 170-308 (650)
206 KOG0804 Cytoplasmic Zn-finger 86.8 2.7 5.9E-05 43.4 8.0 77 377-456 74-154 (493)
207 KOG4574 RNA-binding protein (c 86.7 0.48 1E-05 52.4 2.8 77 378-460 299-376 (1007)
208 KOG2253 U1 snRNP complex, subu 86.6 0.74 1.6E-05 49.8 4.1 70 375-454 38-107 (668)
209 KOG2591 c-Mpl binding protein, 86.0 1.1 2.3E-05 47.4 4.7 77 553-641 174-260 (684)
210 KOG2591 c-Mpl binding protein, 84.3 2.3 4.9E-05 45.0 6.2 68 378-452 176-246 (684)
211 PF03467 Smg4_UPF3: Smg-4/UPF3 84.2 2.4 5.3E-05 39.1 5.8 77 555-641 8-100 (176)
212 PF04847 Calcipressin: Calcipr 83.2 2.3 5E-05 39.4 5.3 60 390-456 8-69 (184)
213 KOG0835 Cyclin L [General func 82.2 0.57 1.2E-05 46.2 0.9 12 6-17 236-247 (367)
214 PF03880 DbpA: DbpA RNA bindin 80.1 5.6 0.00012 30.7 5.7 55 578-636 15-74 (74)
215 KOG0804 Cytoplasmic Zn-finger 80.0 5.4 0.00012 41.3 6.9 74 554-637 74-154 (493)
216 KOG2135 Proteins containing th 75.9 1.3 2.8E-05 46.0 1.2 76 217-354 369-445 (526)
217 KOG2318 Uncharacterized conser 74.4 14 0.00029 39.8 8.1 86 374-460 171-310 (650)
218 PF07292 NID: Nmi/IFP 35 domai 73.4 14 0.00029 29.6 6.1 33 422-454 1-33 (88)
219 KOG4019 Calcineurin-mediated s 70.5 5 0.00011 36.3 3.4 60 579-639 30-90 (193)
220 PF03880 DbpA: DbpA RNA bindin 70.3 11 0.00025 29.0 5.1 59 387-455 11-74 (74)
221 PF11767 SET_assoc: Histone ly 67.8 7.2 0.00016 29.3 3.3 52 578-633 14-65 (66)
222 PF07292 NID: Nmi/IFP 35 domai 67.6 2 4.4E-05 34.3 0.4 72 321-399 1-74 (88)
223 KOG4410 5-formyltetrahydrofola 64.4 21 0.00046 34.7 6.4 55 369-429 322-377 (396)
224 KOG2891 Surface glycoprotein [ 62.8 4 8.8E-05 39.1 1.4 39 216-254 145-195 (445)
225 PF03468 XS: XS domain; Inter 56.3 19 0.00042 30.6 4.3 86 556-643 10-112 (116)
226 COG5638 Uncharacterized conser 55.6 47 0.001 34.1 7.4 37 603-639 260-298 (622)
227 PF10567 Nab6_mRNP_bdg: RNA-re 48.6 45 0.00097 32.9 5.9 76 553-638 14-107 (309)
228 KOG4483 Uncharacterized conser 46.7 33 0.00071 35.1 4.8 55 377-438 391-446 (528)
229 PF03439 Spt5-NGN: Early trans 44.7 43 0.00094 26.5 4.5 49 590-642 33-81 (84)
230 KOG2891 Surface glycoprotein [ 44.4 9 0.0002 36.8 0.6 71 554-626 149-247 (445)
231 PF15513 DUF4651: Domain of un 42.0 63 0.0014 23.9 4.4 22 576-597 6-27 (62)
232 PF10567 Nab6_mRNP_bdg: RNA-re 40.8 66 0.0014 31.8 5.8 82 375-456 13-106 (309)
233 PF11671 Apis_Csd: Complementa 39.5 4.1 8.9E-05 34.3 -2.2 12 220-231 85-96 (146)
234 PF08734 GYD: GYD domain; Int 38.6 1.3E+02 0.0029 24.2 6.5 66 577-644 21-89 (91)
235 PF07530 PRE_C2HC: Associated 36.3 57 0.0012 24.7 3.7 61 392-456 2-63 (68)
236 KOG4410 5-formyltetrahydrofola 32.8 2.9E+02 0.0062 27.2 8.5 46 556-611 332-377 (396)
237 PF03468 XS: XS domain; Inter 32.1 67 0.0014 27.3 3.9 51 221-274 9-68 (116)
238 PRK08559 nusG transcription an 31.2 1.4E+02 0.003 26.8 6.0 48 578-625 22-70 (153)
239 KOG4483 Uncharacterized conser 31.1 79 0.0017 32.5 4.7 54 555-620 392-446 (528)
240 PF14111 DUF4283: Domain of un 30.8 30 0.00066 30.8 1.8 82 320-411 57-139 (153)
241 PRK10629 EnvZ/OmpR regulon mod 30.7 3.6E+02 0.0077 23.4 8.5 57 578-637 52-109 (127)
242 PF14111 DUF4283: Domain of un 30.2 39 0.00085 30.0 2.4 58 389-456 29-90 (153)
243 KOG1882 Transcriptional regula 29.2 45 0.00099 31.8 2.5 14 417-430 214-227 (293)
244 PF11823 DUF3343: Protein of u 28.3 85 0.0018 24.0 3.6 25 602-626 2-26 (73)
245 PF03439 Spt5-NGN: Early trans 25.4 96 0.0021 24.5 3.5 34 403-441 33-66 (84)
246 TIGR02542 B_forsyth_147 Bacter 24.5 92 0.002 26.0 3.2 47 385-431 82-131 (145)
247 KOG4019 Calcineurin-mediated s 22.4 90 0.002 28.6 3.0 74 378-458 11-90 (193)
248 KOG2295 C2H2 Zn-finger protein 22.3 14 0.00031 39.4 -2.2 65 377-441 231-295 (648)
249 cd04908 ACT_Bt0572_1 N-termina 22.0 3.3E+02 0.0071 19.9 7.4 43 578-620 15-59 (66)
250 KOG2217 U4/U6.U5 snRNP associa 20.6 40 0.00087 37.1 0.6 9 237-245 165-173 (705)
No 1
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=3.4e-52 Score=450.76 Aligned_cols=368 Identities=46% Similarity=0.695 Sum_probs=271.3
Q ss_pred CCCCCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeee
Q 006380 215 DPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVA 294 (647)
Q Consensus 215 ~~~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (647)
..++..++|||+|||..+|+.+|.++|++||.|..|.|+.++.+|.++|||
T Consensus 84 ~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~a----------------------------- 134 (457)
T TIGR01622 84 EAERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVA----------------------------- 134 (457)
T ss_pred ccccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEE-----------------------------
Confidence 445678999999999999999999999999999999999999999999999
Q ss_pred cccceEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCChhhhhhhcccccCCCCCCCCCC
Q 006380 295 EVGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYG 374 (647)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (647)
||+|.+.++|.+||.|+|..+.|.+|.|.++............... ...
T Consensus 135 ---------------------------fVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~----~~~ 183 (457)
T TIGR01622 135 ---------------------------YVEFYDVESVIKALALTGQMLLGRPIIVQSSQAEKNRAAKAATHQP----GDI 183 (457)
T ss_pred ---------------------------EEEECCHHHHHHHHHhCCCEECCeeeEEeecchhhhhhhhcccccC----CCC
Confidence 9999999999999999999999999999876554333222111111 112
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEe
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 454 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~ 454 (647)
+...+|||+|||..+++++|+++|+.||.|..|.|+.+..+|.++|||||+|.+.++|.+||..|+| +.|.|+.|.|.|
T Consensus 184 p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g-~~i~g~~i~v~~ 262 (457)
T TIGR01622 184 PNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNG-FELAGRPIKVGY 262 (457)
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCC-cEECCEEEEEEE
Confidence 2368999999999999999999999999999999999988889999999999999999999999999 589999999999
Q ss_pred ecCCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccc--cCccCCCCC
Q 006380 455 VTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAIS--LPVVGQPAV 532 (647)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 532 (647)
+.+....................+..........++..+...+..... ...+.......+..... +.....+..
T Consensus 263 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (457)
T TIGR01622 263 AQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGL----LIPGTGSKIALMQKLQRDGIIDPNIPSR 338 (457)
T ss_pred ccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccc----cCCCccchhhhhcccccccccccccccc
Confidence 986544433322222222233333334444444444443333311000 00000000000000000 000000000
Q ss_pred CCCC-CCCCCccc-ccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEe-cCCCceEEEEeC
Q 006380 533 PVPA-VTAPVIPN-MAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVD-KRSAGFVYLRFE 609 (647)
Q Consensus 533 ~~~~-~~~~~~~~-~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~-~~~~g~afV~F~ 609 (647)
.... ......+. ........++.+|+|.||+++....++.|+++|.+||.++|++||.|+.|.|. +.+.|+|||+|.
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~ 418 (457)
T TIGR01622 339 YATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFS 418 (457)
T ss_pred ccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEEC
Confidence 0000 00000011 11111346788999999999999999999999999999999999999999886 567899999999
Q ss_pred CHHHHHHHHHHhcCcccCCeEEEEEEcChhhhhhccCC
Q 006380 610 STEAAASAQRAMHMRWFARRLISAIFMKPEDYEAKFKS 647 (647)
Q Consensus 610 ~~~~A~~A~~~l~g~~~~Gr~l~v~~~~~~~~~~~~~~ 647 (647)
++++|.+|++.|||++|+|+.|.|.|++++.|.++|++
T Consensus 419 ~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~~~~~~~~~ 456 (457)
T TIGR01622 419 SVDAALAAFQALNGRYFGGKMITAAFVVNDVYDMSCLP 456 (457)
T ss_pred CHHHHHHHHHHhcCcccCCeEEEEEEEcHHHHHhhcCC
Confidence 99999999999999999999999999999999999974
No 2
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=100.00 E-value=1.6e-52 Score=419.56 Aligned_cols=372 Identities=50% Similarity=0.755 Sum_probs=299.8
Q ss_pred hhccCCCCCCCCCCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCc
Q 006380 206 KKEVVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSC 285 (647)
Q Consensus 206 ~~~~~~~~~~~~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~ 285 (647)
..........+++..++||+-.|+..+++-+|.++|+.+|.|..|.++.|+.+++++|.+
T Consensus 165 ~r~~~~~l~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~-------------------- 224 (549)
T KOG0147|consen 165 PREASRILSPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIA-------------------- 224 (549)
T ss_pred cccccccCCchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhccee--------------------
Confidence 345556777888999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeeeecccceEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCChhhhhhhcccccC
Q 006380 286 CVIKFFLVAEVGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSA 365 (647)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~ 365 (647)
||+|.+.++..+|+.|.|+.+.|.+|.|+++...++.....+..
T Consensus 225 ------------------------------------Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sEaeknr~a~~s~a 268 (549)
T KOG0147|consen 225 ------------------------------------YVEFCDEQSVPLAIALSGQRLLGVPVIVQLSEAEKNRAANASPA 268 (549)
T ss_pred ------------------------------------EEEEecccchhhHhhhcCCcccCceeEecccHHHHHHHHhcccc
Confidence 99999999999999999999999999999999888874433332
Q ss_pred CCCCCCCCCCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeee
Q 006380 366 GGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEI 445 (647)
Q Consensus 366 ~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~ 445 (647)
... ....++. ..|||+||-+.+++++|+.+|++||.|..|.++.+..||.++||+||+|.+.++|.+|+..||| |.|
T Consensus 269 ~~~-k~~~~p~-~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lng-fel 345 (549)
T KOG0147|consen 269 LQG-KGFTGPM-RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNG-FEL 345 (549)
T ss_pred ccc-cccccch-hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhcc-cee
Confidence 221 2222332 3399999999999999999999999999999999988999999999999999999999999999 899
Q ss_pred CCeEEEEEeecCCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccC
Q 006380 446 VGRTLKVSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLP 525 (647)
Q Consensus 446 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (647)
.|+.|+|...++............+++..+..++.+......+++.+++...... +... +............++.+
T Consensus 346 AGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~-~~s~--~~~~l~~~~~~~~~~~~- 421 (549)
T KOG0147|consen 346 AGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRS-LPST--AISALLLLAKLASAAQF- 421 (549)
T ss_pred cCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCcc-ccch--hhhHHHhccccchHHhh-
Confidence 9999999999988777666666677777777777777666666666655433211 1110 00000000000000000
Q ss_pred ccCCCCCCCCCCCCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEE
Q 006380 526 VVGQPAVPVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVY 605 (647)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~af 605 (647)
+......++ .|.-+.|...+++.|++|.|||+|.+.|.+.|..+|.+||.+.|.+||.|.+|.|++++.|++|
T Consensus 422 ---~~~~~~~~~----~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VY 494 (549)
T KOG0147|consen 422 ---NGVVRVRSV----DPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVY 494 (549)
T ss_pred ---cCCcCcccc----CccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCceEE
Confidence 000001111 1221123334889999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCHHHHHHHHHHhcCcccCCeEEEEEEcChhhhhhccCC
Q 006380 606 LRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEAKFKS 647 (647)
Q Consensus 606 V~F~~~~~A~~A~~~l~g~~~~Gr~l~v~~~~~~~~~~~~~~ 647 (647)
|.|.+++.|..|+.+|||+||.|+.|++.|++.+.|+.+||+
T Consensus 495 vrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~~~Y~~~FP~ 536 (549)
T KOG0147|consen 495 VRCPSAEAAGTAVKALHGRWFAGRMITAKYLPLERYHSKFPD 536 (549)
T ss_pred EecCcHHHHHHHHHHHhhhhhccceeEEEEeehhhhhhhCCC
Confidence 999999999999999999999999999999999999999996
No 3
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=7.2e-48 Score=423.01 Aligned_cols=308 Identities=24% Similarity=0.360 Sum_probs=228.9
Q ss_pred CCCCceEEeccCCccCCHHHHHHHHHhcCCcee------EEEeecCCCCCccceeeeeeeccCccccccccccCceeeee
Q 006380 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRD------VRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKF 290 (647)
Q Consensus 217 ~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~------v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~ 290 (647)
++..++|||||||+.+|+++|.++|.+++.+.. +.++.+...+..+|||
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~a------------------------- 226 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFA------------------------- 226 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEE-------------------------
Confidence 567899999999999999999999998632111 1111111223345666
Q ss_pred eeeecccceEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCChhhhhhhccc-------c
Q 006380 291 FLVAEVGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSN-------T 363 (647)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~~~~~~~~~~-------~ 363 (647)
||+|.+.++|..||+|+|..+.|..|.|..+.......... .
T Consensus 227 -------------------------------fVeF~~~e~A~~Al~l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~ 275 (509)
T TIGR01642 227 -------------------------------FLEFRTVEEATFAMALDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNP 275 (509)
T ss_pred -------------------------------EEEeCCHHHHhhhhcCCCeEeeCceeEecCccccCCccccCCCCCCCCC
Confidence 99999999999999999999999999997543221100000 0
Q ss_pred c--CCC----CCCCCCCCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHH
Q 006380 364 S--AGG----TATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 437 (647)
Q Consensus 364 ~--~~~----~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~ 437 (647)
. ... ...........+|||+|||+.+++++|+++|+.||.|..+.|+.+..+|.++|||||+|.+.++|..||.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~ 355 (509)
T TIGR01642 276 DDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIA 355 (509)
T ss_pred cccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHH
Confidence 0 000 0011112235899999999999999999999999999999999998899999999999999999999999
Q ss_pred HHcCCeeeCCeEEEEEeecCCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccc
Q 006380 438 ALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAV 517 (647)
Q Consensus 438 ~l~g~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (647)
.|+|. .|+|+.|.|.++............. +. ....
T Consensus 356 ~l~g~-~~~~~~l~v~~a~~~~~~~~~~~~~-------~~-~~~~----------------------------------- 391 (509)
T TIGR01642 356 ALNGK-DTGDNKLHVQRACVGANQATIDTSN-------GM-APVT----------------------------------- 391 (509)
T ss_pred HcCCC-EECCeEEEEEECccCCCCCCccccc-------cc-cccc-----------------------------------
Confidence 99995 7999999999986321110000000 00 0000
Q ss_pred cccccccCccCCCCCCCCCCCCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEe
Q 006380 518 NQQAISLPVVGQPAVPVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVD 597 (647)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~ 597 (647)
... . .+..........++.+|+|.||+.+..+.++.+|++|.++|+++|++||.|+.|.|+
T Consensus 392 -~~~---~---------------~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~ 452 (509)
T TIGR01642 392 -LLA---K---------------ALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIP 452 (509)
T ss_pred -ccc---c---------------cchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEee
Confidence 000 0 000000001245678999999998888888899999999999999999999999997
Q ss_pred cC--------CCceEEEEeCCHHHHHHHHHHhcCcccCCeEEEEEEcChhhhhh
Q 006380 598 KR--------SAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEA 643 (647)
Q Consensus 598 ~~--------~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l~v~~~~~~~~~~ 643 (647)
.+ +.|+|||+|.++++|.+|+..|||+.|+|++|.|.|++++.|.+
T Consensus 453 ~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~~~~~ 506 (509)
T TIGR01642 453 RPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGEDCYKA 506 (509)
T ss_pred ccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCHHHhhc
Confidence 53 36899999999999999999999999999999999999999986
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=4.1e-39 Score=342.08 Aligned_cols=179 Identities=20% Similarity=0.361 Sum_probs=154.1
Q ss_pred CCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecccc
Q 006380 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVGM 298 (647)
Q Consensus 219 ~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (647)
..++|||+|||+.+|+++|.++|.+||.|.+|.|+.|+.||+++|||
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfA--------------------------------- 152 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFA--------------------------------- 152 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeE---------------------------------
Confidence 46899999999999999999999999999999999999999999999
Q ss_pred eEeecCCccccccCCcccccceeeEEecCCcCHHHHH-HhcCccccCccccCCCChhhhhhhcccccCCCCCCCCCCCCC
Q 006380 299 VFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAID 377 (647)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al-~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (647)
||+|.+.++|..|+ .|||..+.|+.|.|..+......... ...........
T Consensus 153 -----------------------FVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~~~-----~~~~~~~~~~~ 204 (612)
T TIGR01645 153 -----------------------FVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPI-----IDMVQEEAKKF 204 (612)
T ss_pred -----------------------EEEeCcHHHHHHHHHhcCCeEEecceeeecccccccccccc-----ccccccccccc
Confidence 99999999999999 59999999999999754321110000 00000111224
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecC
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 457 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~ 457 (647)
.+|||+|||..+++++|+++|+.||.|..|.|+++..++.++|||||+|.+.++|.+||..||+ +.|+|+.|.|.++..
T Consensus 205 ~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg-~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 205 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNL-FDLGGQYLRVGKCVT 283 (612)
T ss_pred ceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCC-CeeCCeEEEEEecCC
Confidence 7999999999999999999999999999999999988899999999999999999999999999 589999999999885
Q ss_pred CC
Q 006380 458 HV 459 (647)
Q Consensus 458 ~~ 459 (647)
..
T Consensus 284 pP 285 (612)
T TIGR01645 284 PP 285 (612)
T ss_pred Cc
Confidence 43
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=2.1e-39 Score=339.20 Aligned_cols=330 Identities=18% Similarity=0.321 Sum_probs=226.3
Q ss_pred CceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecccce
Q 006380 220 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVGMV 299 (647)
Q Consensus 220 ~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (647)
..+|||+|||+.+|+++|.++|.+||+|..|+|+.++.+|.++|||
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~a---------------------------------- 48 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYG---------------------------------- 48 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEE----------------------------------
Confidence 4689999999999999999999999999999999999999999999
Q ss_pred EeecCCccccccCCcccccceeeEEecCCcCHHHHH-HhcCccccCccccCCCChhhhhhhcccccCCCCCCCCCCCCCc
Q 006380 300 FFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDR 378 (647)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al-~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (647)
||+|.+.++|..|+ .|+|..+.|..|.|.++.+... .....
T Consensus 49 ----------------------fV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~----------------~~~~~ 90 (352)
T TIGR01661 49 ----------------------FVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSSD----------------SIKGA 90 (352)
T ss_pred ----------------------EEEECcHHHHHHHHhhcccEEECCeeEEEEeeccccc----------------ccccc
Confidence 99999999999999 5999999999999987643211 11236
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCC--eEEEEEeec
Q 006380 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG--RTLKVSSVT 456 (647)
Q Consensus 379 ~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g--~~l~v~~~~ 456 (647)
+|||+|||..+++++|..+|+.||.|..+.++.+..++.++|||||+|.+.++|..|++.|+|. .+.| ..|.|.++.
T Consensus 91 ~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~-~~~g~~~~i~v~~a~ 169 (352)
T TIGR01661 91 NLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGT-TPSGCTEPITVKFAN 169 (352)
T ss_pred eEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC-ccCCCceeEEEEECC
Confidence 8999999999999999999999999999999988878899999999999999999999999996 5766 678888886
Q ss_pred CCCCCCCccccC--CCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcC-CCCCCC----CCccccccccccCccCC
Q 006380 457 DHVGTQDTAAKS--ADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSL-GVAPAV----NGSAVNQQAISLPVVGQ 529 (647)
Q Consensus 457 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~ 529 (647)
............ ............+.... .... ..+..... ...+.. ............+....
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (352)
T TIGR01661 170 NPSSSNSKGLLSQLEAVQNPQTTRVPLSTIL--------TAAG-IGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHA 240 (352)
T ss_pred CCCcCCchhcCchhhcccCcccCCCCccccc--------cccC-CCCccCcccccccCcchhhhhhhhhhhhcccccccc
Confidence 543211110000 00000000000000000 0000 00000000 000000 00000000000000000
Q ss_pred CCCCCCCC-CCC--Cc-ccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----C
Q 006380 530 PAVPVPAV-TAP--VI-PNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----S 600 (647)
Q Consensus 530 ~~~~~~~~-~~~--~~-~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~ 600 (647)
+....+.. ..+ .+ .....+.......+|||.|| |..++ +++|.++|++||.|++|.|..+ +
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL--~~~~~--------e~~L~~~F~~fG~v~~v~i~~d~~t~~s 310 (352)
T TIGR01661 241 AQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNL--SPDTD--------ETVLWQLFGPFGAVQNVKIIRDLTTNQC 310 (352)
T ss_pred cccCCCccccccccccccCCCCCCCCCCCcEEEEeCC--CCCCC--------HHHHHHHHHhCCCeEEEEEeEcCCCCCc
Confidence 00000000 000 00 00000011233457999999 88887 7999999999999999998654 5
Q ss_pred CceEEEEeCCHHHHHHHHHHhcCcccCCeEEEEEEcChhhh
Q 006380 601 AGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDY 641 (647)
Q Consensus 601 ~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l~v~~~~~~~~ 641 (647)
+|+|||+|.+.++|.+|+..|||..|+|+.|+|.|++...+
T Consensus 311 kG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 311 KGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred cceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 99999999999999999999999999999999999987654
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.2e-38 Score=352.73 Aligned_cols=324 Identities=25% Similarity=0.324 Sum_probs=254.5
Q ss_pred eEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCc----eeeeeeee----
Q 006380 222 TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSC----CVIKFFLV---- 293 (647)
Q Consensus 222 ~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~----~~~~~~~~---- 293 (647)
+|||+|||.++|+++|.++|++||.|.+|+|+.|..|++++|||||.|.+..+|..+...+++. ..+.+.|+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 6999999999999999999999999999999999999999999999999999987666554443 12344444
Q ss_pred ----ecccceEeecCCcccc-------------------ccCCcccccceeeEEecCCcCHHHHH-HhcCccccCccccC
Q 006380 294 ----AEVGMVFFLLGDETYT-------------------VLDPATVLVSYRYIEFYDVMSVPMAI-ALSGQLLLGQPVMV 349 (647)
Q Consensus 294 ----~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~afv~f~~~~~a~~al-~l~g~~~~g~~l~v 349 (647)
+...++|+.|.+...+ +.+..+...+||||+|.+.++|..|+ .++|..+.|..|.|
T Consensus 82 ~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v 161 (562)
T TIGR01628 82 SLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYV 161 (562)
T ss_pred cccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEE
Confidence 3445678887774321 12333446689999999999999999 59999999999998
Q ss_pred CCChhhhhhhcccccCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCH
Q 006380 350 KPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQL 429 (647)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~ 429 (647)
.......... .......++|||+|||..+++++|+++|+.||.|..+.++.+. ++.++|||||+|.+.
T Consensus 162 ~~~~~~~~~~-----------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~ 229 (562)
T TIGR01628 162 GRFIKKHERE-----------AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKH 229 (562)
T ss_pred eccccccccc-----------cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCH
Confidence 6543322211 0111223789999999999999999999999999999999886 789999999999999
Q ss_pred HHHHHHHHHHcCCeeeC----CeEEEEEeecCCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCc
Q 006380 430 EHAKAAQSALNGKLEIV----GRTLKVSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGS 505 (647)
Q Consensus 430 ~~A~~Al~~l~g~~~~~----g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (647)
++|.+|++.|+|. .|. |..|.|.++........ .+.........
T Consensus 230 e~A~~Av~~l~g~-~i~~~~~g~~l~v~~a~~k~er~~------------------------~~~~~~~~~~~------- 277 (562)
T TIGR01628 230 EDAAKAVEEMNGK-KIGLAKEGKKLYVGRAQKRAEREA------------------------ELRRKFEELQQ------- 277 (562)
T ss_pred HHHHHHHHHhCCc-EecccccceeeEeecccChhhhHH------------------------HHHhhHHhhhh-------
Confidence 9999999999996 788 99999988764221110 00000000000
Q ss_pred CCCCCCCCCccccccccccCccCCCCCCCCCCCCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHh
Q 006380 506 LGVAPAVNGSAVNQQAISLPVVGQPAVPVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEEC 585 (647)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f 585 (647)
.........+|||+|| +..++ +++|+++|
T Consensus 278 -----------------------------------------~~~~~~~~~~l~V~nl--~~~~~--------~~~L~~~F 306 (562)
T TIGR01628 278 -----------------------------------------ERKMKAQGVNLYVKNL--DDTVT--------DEKLRELF 306 (562)
T ss_pred -----------------------------------------hhhcccCCCEEEEeCC--CCccC--------HHHHHHHH
Confidence 0000123457999999 88777 79999999
Q ss_pred hccCCeEEEEEecC----CCceEEEEeCCHHHHHHHHHHhcCcccCCeEEEEEEcChhh
Q 006380 586 SKYGRVKHIYVDKR----SAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPED 640 (647)
Q Consensus 586 ~~~G~v~~v~l~~~----~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l~v~~~~~~~ 640 (647)
+.||.|+.|.|..+ ++|+|||+|.+.++|.+|+..|||..|+|+.|.|.++...+
T Consensus 307 ~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~ 365 (562)
T TIGR01628 307 SECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKE 365 (562)
T ss_pred HhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcH
Confidence 99999999988644 58999999999999999999999999999999999988654
No 7
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3.1e-36 Score=293.84 Aligned_cols=251 Identities=21% Similarity=0.339 Sum_probs=216.8
Q ss_pred CCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeeccc
Q 006380 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVG 297 (647)
Q Consensus 218 ~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (647)
...+.||||.||.++.|++|..+|...|.|-+++||+|+-+|.++|||
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYA-------------------------------- 128 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYA-------------------------------- 128 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceE--------------------------------
Confidence 456899999999999999999999999999999999999999999999
Q ss_pred ceEeecCCccccccCCcccccceeeEEecCCcCHHHHH-HhcCccc-cCccccCCCChhhhhhhcccccCCCCCCCCCCC
Q 006380 298 MVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAI-ALSGQLL-LGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGA 375 (647)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al-~l~g~~~-~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (647)
||.|.+.+.|+.|+ .||+..| .|+.|.|..+..
T Consensus 129 ------------------------FVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sva--------------------- 163 (506)
T KOG0117|consen 129 ------------------------FVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVA--------------------- 163 (506)
T ss_pred ------------------------EEEeecHHHHHHHHHHhhCccccCCCEeEEEEeee---------------------
Confidence 99999999999999 5999877 688888866543
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccCCC-eeEEEeccCC-CCCCeeeEEEEEeCCHHHHHHHHHHH-cCCeeeCCeEEEE
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEPFGP-VELVQLPLDI-ETGQCKGFGFVQFAQLEHAKAAQSAL-NGKLEIVGRTLKV 452 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~~g~-i~~v~i~~~~-~~~~~~g~afV~f~~~~~A~~Al~~l-~g~~~~~g~~l~v 452 (647)
+++|||+|||...++++|++.|++.++ |..|.|...+ ...+.+|||||+|.++..|..|-..| +++|++.|..+.|
T Consensus 164 -n~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tV 242 (506)
T KOG0117|consen 164 -NCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITV 242 (506)
T ss_pred -cceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCccee
Confidence 289999999999999999999999864 5666665544 35678999999999999999987655 6779999999999
Q ss_pred EeecCCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCCC
Q 006380 453 SSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAV 532 (647)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (647)
.||.+......-
T Consensus 243 dWAep~~e~ded-------------------------------------------------------------------- 254 (506)
T KOG0117|consen 243 DWAEPEEEPDED-------------------------------------------------------------------- 254 (506)
T ss_pred eccCcccCCChh--------------------------------------------------------------------
Confidence 999864432210
Q ss_pred CCCCCCCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHH
Q 006380 533 PVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTE 612 (647)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~ 612 (647)
.....++|||+|| +..+| ++.|+++|+.||.|+.|+.+ +.+|||+|++.+
T Consensus 255 -----------------~ms~VKvLYVRNL--~~~tT--------eE~lk~~F~~~G~veRVkk~---rDYaFVHf~eR~ 304 (506)
T KOG0117|consen 255 -----------------TMSKVKVLYVRNL--MESTT--------EETLKKLFNEFGKVERVKKP---RDYAFVHFAERE 304 (506)
T ss_pred -----------------hhhheeeeeeecc--chhhh--------HHHHHHHHHhccceEEeecc---cceeEEeecchH
Confidence 0123368999999 88888 89999999999999999888 459999999999
Q ss_pred HHHHHHHHhcCcccCCeEEEEEEcChhhhhhc
Q 006380 613 AAASAQRAMHMRWFARRLISAIFMKPEDYEAK 644 (647)
Q Consensus 613 ~A~~A~~~l~g~~~~Gr~l~v~~~~~~~~~~~ 644 (647)
+|.+|++.|||+.|+|..|.|+|+.|.+=+++
T Consensus 305 davkAm~~~ngkeldG~~iEvtLAKP~~k~k~ 336 (506)
T KOG0117|consen 305 DAVKAMKETNGKELDGSPIEVTLAKPVDKKKK 336 (506)
T ss_pred HHHHHHHHhcCceecCceEEEEecCChhhhcc
Confidence 99999999999999999999999998774443
No 8
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=8.5e-35 Score=309.22 Aligned_cols=244 Identities=21% Similarity=0.342 Sum_probs=205.5
Q ss_pred CCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecccc
Q 006380 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVGM 298 (647)
Q Consensus 219 ~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (647)
...+|||+|||.++|+++|.++|++||.|.+++|++| .+|.++|||
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfa--------------------------------- 102 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYA--------------------------------- 102 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceE---------------------------------
Confidence 4589999999999999999999999999999999999 889999999
Q ss_pred eEeecCCccccccCCcccccceeeEEecCCcCHHHHHH-hcCcccc-CccccCCCChhhhhhhcccccCCCCCCCCCCCC
Q 006380 299 VFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA-LSGQLLL-GQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAI 376 (647)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~-l~g~~~~-g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (647)
||+|.+.++|..||. ||+..+. |+.|.|..+. .
T Consensus 103 -----------------------FV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~----------------------~ 137 (578)
T TIGR01648 103 -----------------------FVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV----------------------D 137 (578)
T ss_pred -----------------------EEEeCCHHHHHHHHHHcCCCeecCCccccccccc----------------------c
Confidence 999999999999995 8988875 7777665432 1
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCC-eeEEEe-ccCCCCCCeeeEEEEEeCCHHHHHHHHHHHc-CCeeeCCeEEEEE
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGP-VELVQL-PLDIETGQCKGFGFVQFAQLEHAKAAQSALN-GKLEIVGRTLKVS 453 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~-i~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~-g~~~~~g~~l~v~ 453 (647)
.++|||+|||..+++++|.+.|.+++. +..+.+ ......++++|||||+|.+.++|..|+..|+ +.+.+.|+.|.|.
T Consensus 138 ~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~Vd 217 (578)
T TIGR01648 138 NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVD 217 (578)
T ss_pred CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEE
Confidence 279999999999999999999999863 444333 3333456789999999999999999998875 3467899999999
Q ss_pred eecCCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCCCC
Q 006380 454 SVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVP 533 (647)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (647)
|+.+......
T Consensus 218 wA~p~~~~d~---------------------------------------------------------------------- 227 (578)
T TIGR01648 218 WAEPEEEVDE---------------------------------------------------------------------- 227 (578)
T ss_pred eecccccccc----------------------------------------------------------------------
Confidence 9863221100
Q ss_pred CCCCCCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhcc--CCeEEEEEecCCCceEEEEeCCH
Q 006380 534 VPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKY--GRVKHIYVDKRSAGFVYLRFEST 611 (647)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~--G~v~~v~l~~~~~g~afV~F~~~ 611 (647)
......++|||.|| +..++ +++|+++|+.| |.|+.|.+. +++|||+|.+.
T Consensus 228 ---------------~~~~~~k~LfVgNL--~~~~t--------ee~L~~~F~~f~~G~I~rV~~~---rgfAFVeF~s~ 279 (578)
T TIGR01648 228 ---------------DVMAKVKILYVRNL--MTTTT--------EEIIEKSFSEFKPGKVERVKKI---RDYAFVHFEDR 279 (578)
T ss_pred ---------------cccccccEEEEeCC--CCCCC--------HHHHHHHHHhcCCCceEEEEee---cCeEEEEeCCH
Confidence 00123468999999 88877 79999999999 999999887 57999999999
Q ss_pred HHHHHHHHHhcCcccCCeEEEEEEcChh
Q 006380 612 EAAASAQRAMHMRWFARRLISAIFMKPE 639 (647)
Q Consensus 612 ~~A~~A~~~l~g~~~~Gr~l~v~~~~~~ 639 (647)
++|.+|++.|||..|.|+.|+|+|+.+.
T Consensus 280 e~A~kAi~~lnG~~i~Gr~I~V~~Akp~ 307 (578)
T TIGR01648 280 EDAVKAMDELNGKELEGSEIEVTLAKPV 307 (578)
T ss_pred HHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence 9999999999999999999999999874
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=9.1e-34 Score=305.40 Aligned_cols=336 Identities=17% Similarity=0.132 Sum_probs=215.2
Q ss_pred CCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecccc
Q 006380 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVGM 298 (647)
Q Consensus 219 ~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (647)
++++|||+|||+.+|+++|.++|++||.|.+|.|+.+ +|||
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~a--------------------------------- 41 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQA--------------------------------- 41 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEE---------------------------------
Confidence 4689999999999999999999999999999999863 4677
Q ss_pred eEeecCCccccccCCcccccceeeEEecCCcCHHHHHH---hcCccccCccccCCCChhhhhhhcccccCCCCCCCCCCC
Q 006380 299 VFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA---LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGA 375 (647)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~---l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (647)
||+|.+.++|..|++ +++..+.|+.|.|+++........... ... .....
T Consensus 42 -----------------------fVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~~~~~~---~~~-~~~~~ 94 (481)
T TIGR01649 42 -----------------------LVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIKRDGNS---DFD-SAGPN 94 (481)
T ss_pred -----------------------EEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccccCCCC---ccc-CCCCC
Confidence 999999999999995 578899999999998754321111100 000 00111
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCC--eEEEEE
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG--RTLKVS 453 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g--~~l~v~ 453 (647)
....|+|.||++.+++++|+++|+.||.|..|.|+++. ..|+|||+|.+.++|.+|++.|||. .|.| ++|.|.
T Consensus 95 ~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~----~~~~afVef~~~~~A~~A~~~Lng~-~i~~~~~~l~v~ 169 (481)
T TIGR01649 95 KVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN----NVFQALVEFESVNSAQHAKAALNGA-DIYNGCCTLKIE 169 (481)
T ss_pred ceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC----CceEEEEEECCHHHHHHHHHHhcCC-cccCCceEEEEE
Confidence 12579999999999999999999999999999997764 2478999999999999999999997 5654 589999
Q ss_pred eecCCCCCCCccccCCCCCCCCCC-----CcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCcc-
Q 006380 454 SVTDHVGTQDTAAKSADFDDDDGG-----GLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVV- 527 (647)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 527 (647)
|+....-.-..+. ...++..... ...+....... ...........+.....+... ....+......+...
T Consensus 170 ~sk~~~l~v~~~~-~~s~dyt~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~ 245 (481)
T TIGR01649 170 YAKPTRLNVKYND-DDSRDYTNPDLPGRRDPGLDQTHRQR-QPALLGQHPSSYGHDGYSSHG--GPLAPLAGGDRMGPPH 245 (481)
T ss_pred EecCCCceeEecc-cCCCCCcCCCCCCCCCCCcCcccccc-ccccccCCCccCCCcccccCC--CCCCcccccccCCCcc
Confidence 9875331110000 0000100000 00000000000 000000000000000000000 000000000000000
Q ss_pred CCCCCCCCC---CCCCCcccccccccCCCCceEEecCcCCCC-CCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCce
Q 006380 528 GQPAVPVPA---VTAPVIPNMAAEFIGSPSECLLLKNMFDPA-METDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGF 603 (647)
Q Consensus 528 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~-~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~ 603 (647)
..+....+. ...++.+....+...+++.+|+|+|| |. .++ +++|.++|+.||.|..|+|+.+.+|+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL--~~~~vt--------~~~L~~lF~~yG~V~~vki~~~~~g~ 315 (481)
T TIGR01649 246 GPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGL--HQEKVN--------CDRLFNLFCVYGNVERVKFMKNKKET 315 (481)
T ss_pred cCCCCCcccccccccCccccccCCCCCCCCCEEEEeCC--CCCCCC--------HHHHHHHHHhcCCeEEEEEEeCCCCE
Confidence 000000000 00000001011112467789999999 75 466 79999999999999999998888999
Q ss_pred EEEEeCCHHHHHHHHHHhcCcccCCeEEEEEEcChh
Q 006380 604 VYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPE 639 (647)
Q Consensus 604 afV~F~~~~~A~~A~~~l~g~~~~Gr~l~v~~~~~~ 639 (647)
|||+|.++++|..|+..|||..|.|+.|.|.+...+
T Consensus 316 afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 316 ALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred EEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 999999999999999999999999999999997543
No 10
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.9e-34 Score=261.60 Aligned_cols=305 Identities=20% Similarity=0.344 Sum_probs=222.3
Q ss_pred CceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecccce
Q 006380 220 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVGMV 299 (647)
Q Consensus 220 ~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (647)
-..|.|.-||.++|+++|+.+|...|.|+++++++|+.||.|.|||
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYG---------------------------------- 86 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYG---------------------------------- 86 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccc----------------------------------
Confidence 3568888899999999999999999999999999999999999999
Q ss_pred EeecCCccccccCCcccccceeeEEecCCcCHHHHH-HhcCccccCccccCCCChhhhhhhcccccCCCCCCCCCCCCCc
Q 006380 300 FFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDR 378 (647)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al-~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (647)
||.|-++++|.+|+ .|||..+..+.|+|.++.+.... ....
T Consensus 87 ----------------------FVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~~----------------Ik~a 128 (360)
T KOG0145|consen 87 ----------------------FVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSDS----------------IKDA 128 (360)
T ss_pred ----------------------eeeecChHHHHHHHhhhcceeeccceEEEEeccCChhh----------------hccc
Confidence 99999999999999 49999999999999887543221 1126
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCC--eEEEEEeec
Q 006380 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG--RTLKVSSVT 456 (647)
Q Consensus 379 ~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g--~~l~v~~~~ 456 (647)
.|||.+||...+..+|..+|++||.|..-+|+.|..+|.++|.+||.|....+|..|+..|||+ .-.| .+|.|.|+.
T Consensus 129 NLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~-~P~g~tepItVKFan 207 (360)
T KOG0145|consen 129 NLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGCTEPITVKFAN 207 (360)
T ss_pred ceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCC-CCCCCCCCeEEEecC
Confidence 7999999999999999999999999998899999999999999999999999999999999997 4555 479999987
Q ss_pred CCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCC----CCCCCccccccccccC-ccCCCC
Q 006380 457 DHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVA----PAVNGSAVNQQAISLP-VVGQPA 531 (647)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~ 531 (647)
......... .+.+-+.... ...+++++-. ...+-+.+.......+ +....-
T Consensus 208 nPsq~t~~a----------------------~ls~ly~sp~--rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m 263 (360)
T KOG0145|consen 208 NPSQKTNQA----------------------LLSQLYQSPA--RRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGM 263 (360)
T ss_pred Ccccccchh----------------------hhHHhhcCcc--ccCCCcccchhhhhccccccchhhhhccCCCcccccc
Confidence 432211111 0000000000 0000111000 0000000000000000 000000
Q ss_pred CCCCCCCCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEE
Q 006380 532 VPVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYL 606 (647)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV 606 (647)
....++++|.-+ ...=||||.|| ..++. +.-|.++|.+||.|..|+|.++ .+||+||
T Consensus 264 ~~l~~~~lp~~~--------~~g~ciFvYNL--spd~d--------e~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFV 325 (360)
T KOG0145|consen 264 SGLAGVNLPGGP--------GGGWCIFVYNL--SPDAD--------ESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFV 325 (360)
T ss_pred ceeeeeccCCCC--------CCeeEEEEEec--CCCch--------HhHHHHHhCcccceeeEEEEecCCcccccceeEE
Confidence 011222222111 12348999999 44443 5779999999999999999765 4899999
Q ss_pred EeCCHHHHHHHHHHhcCcccCCeEEEEEEcChh
Q 006380 607 RFESTEAAASAQRAMHMRWFARRLISAIFMKPE 639 (647)
Q Consensus 607 ~F~~~~~A~~A~~~l~g~~~~Gr~l~v~~~~~~ 639 (647)
.|.+-++|..||..|||+.+++++|.|+|-+-.
T Consensus 326 tMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 326 TMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred EecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 999999999999999999999999999996643
No 11
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.1e-33 Score=266.25 Aligned_cols=353 Identities=21% Similarity=0.367 Sum_probs=236.0
Q ss_pred CceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecccce
Q 006380 220 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVGMV 299 (647)
Q Consensus 220 ~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (647)
-++||||.|.+.+.|+.|+..|.+||+|.+|.|.+|..|++++||+
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFA---------------------------------- 158 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFA---------------------------------- 158 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceE----------------------------------
Confidence 3789999999999999999999999999999999999999999999
Q ss_pred EeecCCccccccCCcccccceeeEEecCCcCHHHHHH-hcCccccCccccCCCChhhhhhhcc-cccCCCCCCCCCCCCC
Q 006380 300 FFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQS-NTSAGGTATGPYGAID 377 (647)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~-l~g~~~~g~~l~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 377 (647)
||+|.-++.|+.|++ |||..+.|++|+|..+....-..+. ... .......
T Consensus 159 ----------------------FVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpiID~v------qeeAk~f 210 (544)
T KOG0124|consen 159 ----------------------FVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMV------QEEAKKF 210 (544)
T ss_pred ----------------------EEEEeCcHHHHHHHHHhccccccCccccccCCCCCcccchHHHHH------HHHHHhh
Confidence 999999999999995 9999999999999754221100000 000 0000113
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecC
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 457 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~ 457 (647)
.+|||..+.++++++||+.+|+.||+|..|.+-+.+.++..+||+||+|.+......|+..||- |-++|..|+|..+..
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNl-FDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNL-FDLGGQYLRVGKCVT 289 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcch-hhcccceEecccccC
Confidence 7999999999999999999999999999999999998888999999999999999999999988 789999999988875
Q ss_pred CCCCCCccccCCCCCCCCCCCcccchhhHHHHHH-hhhhcCCccccCCcCC-CCCCCCCccccccccccC-ccCCCCCCC
Q 006380 458 HVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQ-KLDRTGIATSIAGSLG-VAPAVNGSAVNQQAISLP-VVGQPAVPV 534 (647)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 534 (647)
....-.........+. ....+ .+......+. .........+..+..+ ..+......+......++ ....++++.
T Consensus 290 PP~aLl~Pat~s~~P~--aaaVA-aAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~ 366 (544)
T KOG0124|consen 290 PPDALLQPATVSAIPA--AAAVA-AAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVIT 366 (544)
T ss_pred CCchhcCCCCcccCch--HHHHH-HHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCceec
Confidence 4332211111111000 00000 0111111111 1111111111111111 111000000100000000 011111100
Q ss_pred -CCCCCCCcccccccc-----------------------------------------------------------cCCCC
Q 006380 535 -PAVTAPVIPNMAAEF-----------------------------------------------------------IGSPS 554 (647)
Q Consensus 535 -~~~~~~~~~~~~~~~-----------------------------------------------------------~~~~~ 554 (647)
.....|++|....+. -...+
T Consensus 367 ~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S 446 (544)
T KOG0124|consen 367 GVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQES 446 (544)
T ss_pred cCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccC
Confidence 000001111000000 22357
Q ss_pred ceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCc---------eEEEEeCCHHHHHHHHHHhcCcc
Q 006380 555 ECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAG---------FVYLRFESTEAAASAQRAMHMRW 625 (647)
Q Consensus 555 ~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g---------~afV~F~~~~~A~~A~~~l~g~~ 625 (647)
++|+|+||++|..+ .++++++|.++|.+||.|..|.|.....| -.||+|....++.+|+.+|+|++
T Consensus 447 ~VivLRNMV~P~Di-----De~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRf 521 (544)
T KOG0124|consen 447 TVIVLRNMVDPKDI-----DEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRF 521 (544)
T ss_pred cEEEEeccCChhhh-----hhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccce
Confidence 78999999999865 35568899999999999999999654332 46999999999999999999999
Q ss_pred cCCeEEEEEEcChhhhhh
Q 006380 626 FARRLISAIFMKPEDYEA 643 (647)
Q Consensus 626 ~~Gr~l~v~~~~~~~~~~ 643 (647)
|+|++|+.+.++..-|++
T Consensus 522 FgGr~VvAE~YDQ~~FD~ 539 (544)
T KOG0124|consen 522 FGGRKVVAEVYDQERFDN 539 (544)
T ss_pred ecCceeehhhhhhhcccc
Confidence 999999999999888764
No 12
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.9e-33 Score=287.68 Aligned_cols=313 Identities=25% Similarity=0.430 Sum_probs=234.9
Q ss_pred CCCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecc
Q 006380 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEV 296 (647)
Q Consensus 217 ~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (647)
....+.++++++|+.++++....+|+.-=.+... .+ .+.|-.|+.+
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl------~~-~~~g~~~~s~--------------------------- 217 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGL------NQ-APDGPSFVSV--------------------------- 217 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhccc------cc-CCCCCceeee---------------------------
Confidence 5678999999999999999999999753110000 00 0002222211
Q ss_pred cceEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCChhhhhhhccccc-------CCCCC
Q 006380 297 GMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTS-------AGGTA 369 (647)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~~~~~~~~~~~~-------~~~~~ 369 (647)
.....+++||++|.+.+.|..|+.+++..+.|.++.+............... .....
T Consensus 218 ----------------~~n~~~nfa~ie~~s~~~at~~~~~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~ 281 (500)
T KOG0120|consen 218 ----------------QLNLEKNFAFIEFRSISEATEAMALDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPA 281 (500)
T ss_pred ----------------eecccccceeEEecCCCchhhhhcccchhhCCCCceecccccccCCccchhhhccccccCCccc
Confidence 1122345779999999999999999999999999988543222221111111 01111
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeE
Q 006380 370 TGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRT 449 (647)
Q Consensus 370 ~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~ 449 (647)
..........++|++||..+++..+++++..||++....++.+..+|.++||||.+|.+......|+..||| +.+++.+
T Consensus 282 ~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnG-m~lgd~~ 360 (500)
T KOG0120|consen 282 STDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNG-MQLGDKK 360 (500)
T ss_pred ccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccch-hhhcCce
Confidence 111112248999999999999999999999999999999999999999999999999999999999999999 5899999
Q ss_pred EEEEeecCCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCC
Q 006380 450 LKVSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQ 529 (647)
Q Consensus 450 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (647)
|.|+.+...........+.
T Consensus 361 lvvq~A~~g~~~~~~~~~~------------------------------------------------------------- 379 (500)
T KOG0120|consen 361 LVVQRAIVGASNANVNFNI------------------------------------------------------------- 379 (500)
T ss_pred eEeehhhccchhccccCCc-------------------------------------------------------------
Confidence 9998876322111111000
Q ss_pred CCCCCCCCCCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC--------CC
Q 006380 530 PAVPVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR--------SA 601 (647)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~--------~~ 601 (647)
...+++.++.....+.++++.+|++.||++|.++.++.+|++|.++|+..|.+||.|..|.|+.+ +.
T Consensus 380 -----~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~ 454 (500)
T KOG0120|consen 380 -----SQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGT 454 (500)
T ss_pred -----cccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCc
Confidence 00011112222223347889999999999999999999999999999999999999999999765 57
Q ss_pred ceEEEEeCCHHHHHHHHHHhcCcccCCeEEEEEEcChhhhhhccC
Q 006380 602 GFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEAKFK 646 (647)
Q Consensus 602 g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l~v~~~~~~~~~~~~~ 646 (647)
|.+||+|++++++++|+++|+|++|+|++|.++|++++.|++...
T Consensus 455 GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDkY~~r~~ 499 (500)
T KOG0120|consen 455 GKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDKYHAREF 499 (500)
T ss_pred ccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHHhhcccc
Confidence 899999999999999999999999999999999999999998753
No 13
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=4.1e-32 Score=263.71 Aligned_cols=177 Identities=34% Similarity=0.540 Sum_probs=155.9
Q ss_pred CCCCCCCCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeee
Q 006380 212 PEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFF 291 (647)
Q Consensus 212 ~~~~~~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~ 291 (647)
..+.++.+.-.+|||.||..++|.+|+++|++||.|.+|.|++|+.|+.++||+
T Consensus 26 ~~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcC-------------------------- 79 (510)
T KOG0144|consen 26 HTDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCC-------------------------- 79 (510)
T ss_pred CCCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceE--------------------------
Confidence 344556677899999999999999999999999999999999999999999999
Q ss_pred eeecccceEeecCCccccccCCcccccceeeEEecCCcCHHHHH-HhcCc-cccC--ccccCCCChhhhhhhcccccCCC
Q 006380 292 LVAEVGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAI-ALSGQ-LLLG--QPVMVKPSEAEKNLVQSNTSAGG 367 (647)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al-~l~g~-~~~g--~~l~v~~~~~~~~~~~~~~~~~~ 367 (647)
||.|.+.++|.+|+ +|+++ .+.| .+|.|++++......
T Consensus 80 ------------------------------Fv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er~-------- 121 (510)
T KOG0144|consen 80 ------------------------------FVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERERI-------- 121 (510)
T ss_pred ------------------------------EEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhhhcc--------
Confidence 99999999999999 57665 5544 577778887665443
Q ss_pred CCCCCCCCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCC
Q 006380 368 TATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG 447 (647)
Q Consensus 368 ~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g 447 (647)
...++|||+-|+..++|.+|+++|++||.|++|.|+++. .+.++|+|||.|.+.+.|..|++.|||...+.|
T Consensus 122 -------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeG 193 (510)
T KOG0144|consen 122 -------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEG 193 (510)
T ss_pred -------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeecc
Confidence 113789999999999999999999999999999999997 899999999999999999999999999977877
Q ss_pred e--EEEEEeecCCCC
Q 006380 448 R--TLKVSSVTDHVG 460 (647)
Q Consensus 448 ~--~l~v~~~~~~~~ 460 (647)
+ +|.|.|+.+...
T Consensus 194 cs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 194 CSQPLVVKFADTQKD 208 (510)
T ss_pred CCCceEEEecccCCC
Confidence 5 799999988754
No 14
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.4e-31 Score=265.33 Aligned_cols=337 Identities=20% Similarity=0.310 Sum_probs=227.1
Q ss_pred ceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecccceE
Q 006380 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVGMVF 300 (647)
Q Consensus 221 ~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (647)
.||||++||+.+|.++|.++|+.+|+|..+.+++++.++.++|||
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfg----------------------------------- 50 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFG----------------------------------- 50 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCcc-----------------------------------
Confidence 799999999999999999999999999999999999999999999
Q ss_pred eecCCccccccCCcccccceeeEEecCCcCHHHHHH-hcCccccCccccCCCChhhhhhhcccccCCCCCC---------
Q 006380 301 FLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTAT--------- 370 (647)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~-l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~--------- 370 (647)
||.|.=.++++.|++ ..+..+.|+.|.|.++.................-
T Consensus 51 ---------------------fVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~ 109 (678)
T KOG0127|consen 51 ---------------------FVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPT 109 (678)
T ss_pred ---------------------ceeeehHhHHHHHHHHhhcCcccceecccccccccccchhcccccchhhhcccccCCcc
Confidence 999999999999995 8888999999999887654333311111100000
Q ss_pred -CCCCCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeE
Q 006380 371 -GPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRT 449 (647)
Q Consensus 371 -~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~ 449 (647)
.-...+...|+|+|||+.+.+.+|+.+|+.||.|..|.|++.. .|...|||||.|....+|..||+.+|+. .|+|++
T Consensus 110 k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~-~i~gR~ 187 (678)
T KOG0127|consen 110 KAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGN-KIDGRP 187 (678)
T ss_pred hhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCc-eecCce
Confidence 0012225799999999999999999999999999999999887 5555699999999999999999999996 899999
Q ss_pred EEEEeecCCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhh-hcCCccccCCcCCCCCCCCCc---------cccc
Q 006380 450 LKVSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLD-RTGIATSIAGSLGVAPAVNGS---------AVNQ 519 (647)
Q Consensus 450 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------~~~~ 519 (647)
|.|.||.++..-...+... +..+..... ...... ............+........ ....
T Consensus 188 VAVDWAV~Kd~ye~ta~~~---------~~s~Kk~~~--eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~ 256 (678)
T KOG0127|consen 188 VAVDWAVDKDTYEDTAHEE---------KQSLKKAVK--EEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGE 256 (678)
T ss_pred eEEeeecccccccccchhh---------hhhhhhccc--hhhhcccccccccccchhcccccccccccccccchhhhccc
Confidence 9999999765332221000 000000000 000000 000000000000000000000 0000
Q ss_pred cccc--cCccCCCCCCCCCCCCCCcccccc---cccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEE
Q 006380 520 QAIS--LPVVGQPAVPVPAVTAPVIPNMAA---EFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHI 594 (647)
Q Consensus 520 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v 594 (647)
.... -.+-.. .....-++...... .....-..+|||.|| |+.++ ++.|.+.|++||.|.++
T Consensus 257 ~~Eee~~~vDd~----e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL--~fD~t--------EEel~~~fskFG~v~ya 322 (678)
T KOG0127|consen 257 ESEEEEDDVDDE----ESSGKKESDKKAQNKTTRENITEGKTVFVRNL--PFDTT--------EEELKEHFSKFGEVKYA 322 (678)
T ss_pred cccccccccccc----cccccCcccchhccccccccccccceEEEecC--Ccccc--------HHHHHHHHHhhccceeE
Confidence 0000 000000 00000001111000 001123378999999 99888 89999999999999998
Q ss_pred EEecC-----CCceEEEEeCCHHHHHHHHHHh-----cC-cccCCeEEEEEEcChhh
Q 006380 595 YVDKR-----SAGFVYLRFESTEAAASAQRAM-----HM-RWFARRLISAIFMKPED 640 (647)
Q Consensus 595 ~l~~~-----~~g~afV~F~~~~~A~~A~~~l-----~g-~~~~Gr~l~v~~~~~~~ 640 (647)
.|... +.|+|||.|.+..+|..||... .| ..|.|+.|+|+++-..+
T Consensus 323 ~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 323 IIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRK 379 (678)
T ss_pred EEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchH
Confidence 77433 6999999999999999999987 34 78999999999976543
No 15
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=5.4e-31 Score=283.87 Aligned_cols=289 Identities=22% Similarity=0.264 Sum_probs=203.1
Q ss_pred ceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecccceE
Q 006380 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVGMVF 300 (647)
Q Consensus 221 ~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (647)
..|||+||++.+|+++|.++|+.||.|..|.|+.+.. .|+|
T Consensus 97 ~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~a----------------------------------- 137 (481)
T TIGR01649 97 LRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQA----------------------------------- 137 (481)
T ss_pred EEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEE-----------------------------------
Confidence 4799999999999999999999999999999987643 3567
Q ss_pred eecCCccccccCCcccccceeeEEecCCcCHHHHH-HhcCccccCc--cccCCCChhhhhh---------------h---
Q 006380 301 FLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAI-ALSGQLLLGQ--PVMVKPSEAEKNL---------------V--- 359 (647)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al-~l~g~~~~g~--~l~v~~~~~~~~~---------------~--- 359 (647)
||+|.+.++|.+|+ .|||..+.|. .|.|.++....-. .
T Consensus 138 ---------------------fVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~ 196 (481)
T TIGR01649 138 ---------------------LVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGR 196 (481)
T ss_pred ---------------------EEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCC
Confidence 88999999998888 4888888653 4444332210000 0
Q ss_pred -----------cccc------------c--------C--------------C----------C------CCCCCCCCCCc
Q 006380 360 -----------QSNT------------S--------A--------------G----------G------TATGPYGAIDR 378 (647)
Q Consensus 360 -----------~~~~------------~--------~--------------~----------~------~~~~~~~~~~~ 378 (647)
.... + . . . .......+++.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (481)
T TIGR01649 197 RDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGS 276 (481)
T ss_pred CCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCC
Confidence 0000 0 0 0 0 00000123568
Q ss_pred eEEEcCCCC-CCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecC
Q 006380 379 KLYVGNLHF-NMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 457 (647)
Q Consensus 379 ~l~v~nLp~-~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~ 457 (647)
+|||+|||+ .+++++|.++|+.||.|..|.|+.++ +|+|||+|.+.++|..||..|||. .|.|+.|.|.++..
T Consensus 277 ~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~-~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 277 VLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGV-KLFGKPLRVCPSKQ 350 (481)
T ss_pred EEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCC-EECCceEEEEEccc
Confidence 999999998 69999999999999999999998874 799999999999999999999995 79999999999864
Q ss_pred CCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCCCCCCCC
Q 006380 458 HVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPAV 537 (647)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (647)
........ ..... + ... ...... .. . . . .. .+..
T Consensus 351 ~~~~~~~~---~~~~~--~--~~~--------~~d~~~-------------~~------~--~--r---~~-----~~~~ 384 (481)
T TIGR01649 351 QNVQPPRE---GQLDD--G--LTS--------YKDYSS-------------SR------N--H--R---FK-----KPGS 384 (481)
T ss_pred ccccCCCC---CcCcC--C--Ccc--------cccccC-------------Cc------c--c--c---CC-----Cccc
Confidence 32111000 00000 0 000 000000 00 0 0 0 00 0000
Q ss_pred CCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCC--eEEEEEecC---CCceEEEEeCCHH
Q 006380 538 TAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGR--VKHIYVDKR---SAGFVYLRFESTE 612 (647)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~--v~~v~l~~~---~~g~afV~F~~~~ 612 (647)
.. .. ...+++.+|+|.|| |..++ +++|+++|+.||. |..|++... .+|+|||+|.+.+
T Consensus 385 -----~~-~~-~~~~ps~~L~v~NL--p~~~t--------ee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e 447 (481)
T TIGR01649 385 -----AN-KN-NIQPPSATLHLSNI--PLSVS--------EEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVE 447 (481)
T ss_pred -----cc-cc-ccCCCCcEEEEecC--CCCCC--------HHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHH
Confidence 00 00 01367789999999 88887 7999999999998 888888543 3689999999999
Q ss_pred HHHHHHHHhcCcccCCeE------EEEEEcCh
Q 006380 613 AAASAQRAMHMRWFARRL------ISAIFMKP 638 (647)
Q Consensus 613 ~A~~A~~~l~g~~~~Gr~------l~v~~~~~ 638 (647)
+|.+|+..|||..|.|+. |+|+|..+
T Consensus 448 ~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~ 479 (481)
T TIGR01649 448 DAVEALIALNHHQLNEPNGSAPYHLKVSFSTS 479 (481)
T ss_pred HHHHHHHHhcCCccCCCCCCccceEEEEeccC
Confidence 999999999999999984 99999875
No 16
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=3.1e-31 Score=242.77 Aligned_cols=235 Identities=25% Similarity=0.406 Sum_probs=187.2
Q ss_pred CCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeeccc
Q 006380 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVG 297 (647)
Q Consensus 218 ~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (647)
.+.++||||||...+||+-|..+|++.|+|.+++|+.+..
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~---------------------------------------- 43 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDEL---------------------------------------- 43 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehhhh----------------------------------------
Confidence 3679999999999999999999999999999999998732
Q ss_pred ceEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCChhhhhhhcccccCCCCCCCCCCCCC
Q 006380 298 MVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAID 377 (647)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (647)
.|.++... +..+.+.....
T Consensus 44 --------------------------------------------------~v~wa~~p-----------~nQsk~t~~~h 62 (321)
T KOG0148|consen 44 --------------------------------------------------KVNWATAP-----------GNQSKPTSNQH 62 (321)
T ss_pred --------------------------------------------------ccccccCc-----------ccCCCCccccc
Confidence 11111100 00011111113
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecC
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 457 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~ 457 (647)
-.|+|+.|...++-++|++.|.+||.|.+++|++|..|++++||+||-|.+.++|..||..|+|+ +|+++.|+-.|++-
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGq-WlG~R~IRTNWATR 141 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQ-WLGRRTIRTNWATR 141 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCe-eeccceeecccccc
Confidence 67999999999999999999999999999999999999999999999999999999999999998 69999999999985
Q ss_pred CCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCCCCCCCC
Q 006380 458 HVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPAV 537 (647)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (647)
+....... .+.+.. .+
T Consensus 142 Kp~e~n~~------------~ltfde--------V~-------------------------------------------- 157 (321)
T KOG0148|consen 142 KPSEMNGK------------PLTFDE--------VY-------------------------------------------- 157 (321)
T ss_pred CccccCCC------------CccHHH--------Hh--------------------------------------------
Confidence 43111000 000000 00
Q ss_pred CCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHH
Q 006380 538 TAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASA 617 (647)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A 617 (647)
+ ...+.+++|||.|| +..++ +++|++.|++||.|..|.|.+ .+|++||.|.+.|.|.+|
T Consensus 158 ---------N-Qssp~NtsVY~G~I--~~~lt--------e~~mr~~Fs~fG~I~EVRvFk-~qGYaFVrF~tkEaAahA 216 (321)
T KOG0148|consen 158 ---------N-QSSPDNTSVYVGNI--ASGLT--------EDLMRQTFSPFGPIQEVRVFK-DQGYAFVRFETKEAAAHA 216 (321)
T ss_pred ---------c-cCCCCCceEEeCCc--Ccccc--------HHHHHHhcccCCcceEEEEec-ccceEEEEecchhhHHHH
Confidence 0 01345678999999 66666 799999999999999999986 489999999999999999
Q ss_pred HHHhcCcccCCeEEEEEEcChh
Q 006380 618 QRAMHMRWFARRLISAIFMKPE 639 (647)
Q Consensus 618 ~~~l~g~~~~Gr~l~v~~~~~~ 639 (647)
|..+||..+.|+.|+|.+=.+.
T Consensus 217 Iv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 217 IVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred HHHhcCceeCceEEEEeccccC
Confidence 9999999999999999985543
No 17
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=6.9e-29 Score=253.12 Aligned_cols=320 Identities=25% Similarity=0.334 Sum_probs=246.7
Q ss_pred eEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCcccccccccc-----Cceeeeeeee-ec
Q 006380 222 TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLIN-----SCCVIKFFLV-AE 295 (647)
Q Consensus 222 ~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~ 295 (647)
.|||| +.+|+..|.++|+++|+|.+|++|.|. | |.|||||+|.+..+|.-+...++ |.+ +.++|+ ..
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~-~rim~s~rd 75 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKP-IRIMWSQRD 75 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcE-EEeehhccC
Confidence 58999 899999999999999999999999999 7 99999999999999865555444 444 456666 45
Q ss_pred ccceEeecCCccccc------cCCccc------------ccceeeEEecCCcCHHHHH-HhcCccccCccccCCCChhhh
Q 006380 296 VGMVFFLLGDETYTV------LDPATV------------LVSYRYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEK 356 (647)
Q Consensus 296 ~~~~~~~~~~~~~~~------~~~~~~------------~~~~afv~f~~~~~a~~al-~l~g~~~~g~~l~v~~~~~~~ 356 (647)
+..+|+.|++.-.+. +..+|. .++| ||+|.+++.|.+|+ .+||..+.|..|.|.+.....
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~ 154 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKE 154 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchh
Confidence 566888888833321 222222 5558 99999999999999 599999999999998776655
Q ss_pred hhhcccccCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHH
Q 006380 357 NLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 436 (647)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al 436 (647)
........ .......++|.|++..++++.|...|..+|.|.++.++.+. .+.++||+||.|.++++|..|+
T Consensus 155 er~~~~~~--------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av 225 (369)
T KOG0123|consen 155 EREAPLGE--------YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAV 225 (369)
T ss_pred hhcccccc--------hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecC-CCCCCCccceeecChhHHHHHH
Confidence 44332221 11112678999999999999999999999999999999986 7779999999999999999999
Q ss_pred HHHcCCeeeCCeEEEEEeecCCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCcc
Q 006380 437 SALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSA 516 (647)
Q Consensus 437 ~~l~g~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (647)
..|++. .+.+..+.|..+....... ..+..+....
T Consensus 226 ~~l~~~-~~~~~~~~V~~aqkk~e~~------------------------~~l~~~~~~~-------------------- 260 (369)
T KOG0123|consen 226 ETLNGK-IFGDKELYVGRAQKKSERE------------------------AELKRKFEQE-------------------- 260 (369)
T ss_pred HhccCC-cCCccceeecccccchhhH------------------------HHHhhhhHhh--------------------
Confidence 999997 5888888888776311100 0000000000
Q ss_pred ccccccccCccCCCCCCCCCCCCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEE
Q 006380 517 VNQQAISLPVVGQPAVPVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYV 596 (647)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l 596 (647)
...+........|+|.|+ ...++ .+.|+.+|+.||.|.++.|
T Consensus 261 ----------------------------~~~~~~~~~~~nl~vknl--d~~~~--------~e~L~~~f~~~GeI~s~kv 302 (369)
T KOG0123|consen 261 ----------------------------FAKRSVSLQGANLYVKNL--DETLS--------DEKLRKIFSSFGEITSAKV 302 (369)
T ss_pred ----------------------------hhhccccccccccccccC--ccccc--------hhHHHHHHhcccceeeEEE
Confidence 000001233457999998 65555 5899999999999999988
Q ss_pred ecC----CCceEEEEeCCHHHHHHHHHHhcCcccCCeEEEEEEcChhhh
Q 006380 597 DKR----SAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDY 641 (647)
Q Consensus 597 ~~~----~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l~v~~~~~~~~ 641 (647)
+.+ ++|++||+|.+.++|.+|+..+||..+.|+.|.|.++...++
T Consensus 303 ~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~ 351 (369)
T KOG0123|consen 303 MVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKED 351 (369)
T ss_pred EeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhcc
Confidence 643 689999999999999999999999999999999988765443
No 18
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=3.2e-26 Score=247.94 Aligned_cols=171 Identities=23% Similarity=0.337 Sum_probs=143.3
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecC
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 457 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~ 457 (647)
++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|| .|+|. .|.|++|.|.++..
T Consensus 90 ~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~-~~~g~~i~v~~~~~ 167 (457)
T TIGR01622 90 RTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQ-MLLGRPIIVQSSQA 167 (457)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCC-EECCeeeEEeecch
Confidence 79999999999999999999999999999999999989999999999999999999999 69996 79999999987642
Q ss_pred CCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCCCCCCCC
Q 006380 458 HVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPAV 537 (647)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (647)
...... ... .. .++
T Consensus 168 ~~~~~~-------------------------------~~~------------~~----------------------~~~- 181 (457)
T TIGR01622 168 EKNRAA-------------------------------KAA------------TH----------------------QPG- 181 (457)
T ss_pred hhhhhh-------------------------------hcc------------cc----------------------cCC-
Confidence 110000 000 00 000
Q ss_pred CCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCHH
Q 006380 538 TAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTE 612 (647)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~~ 612 (647)
..+.+.+|||.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+.+
T Consensus 182 ------------~~p~~~~l~v~nl--~~~~t--------e~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e 239 (457)
T TIGR01622 182 ------------DIPNFLKLYVGNL--HFNIT--------EQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAE 239 (457)
T ss_pred ------------CCCCCCEEEEcCC--CCCCC--------HHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHH
Confidence 0122568999999 88887 8999999999999999988643 4799999999999
Q ss_pred HHHHHHHHhcCcccCCeEEEEEEcCh
Q 006380 613 AAASAQRAMHMRWFARRLISAIFMKP 638 (647)
Q Consensus 613 ~A~~A~~~l~g~~~~Gr~l~v~~~~~ 638 (647)
+|.+|+..|||..|.|+.|+|.|+..
T Consensus 240 ~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 240 EAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHHHHHhcCCcEECCEEEEEEEccC
Confidence 99999999999999999999999763
No 19
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.94 E-value=2.8e-26 Score=233.10 Aligned_cols=169 Identities=27% Similarity=0.416 Sum_probs=152.4
Q ss_pred CCCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecc
Q 006380 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEV 296 (647)
Q Consensus 217 ~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (647)
.....+|||+|||+++|+++|.++|..||.|+.|+|+.|..|++++|||
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGya------------------------------- 152 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYA------------------------------- 152 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEE-------------------------------
Confidence 3467899999999999999999999999999999999999999999999
Q ss_pred cceEeecCCccccccCCcccccceeeEEecCCcCHHHHH-HhcCccccCccccCCCChhhhhhhcccccCCCCCCCCCCC
Q 006380 297 GMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGA 375 (647)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al-~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (647)
||+|.+.++|..|+ .|+|..+.++.|.|.++.+... ..
T Consensus 153 -------------------------FVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~----------------~~ 191 (346)
T TIGR01659 153 -------------------------FVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGGE----------------SI 191 (346)
T ss_pred -------------------------EEEEccHHHHHHHHHHcCCCccCCceeeeeccccccc----------------cc
Confidence 99999999999999 5999999999999987643211 01
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCC--eEEEEE
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG--RTLKVS 453 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g--~~l~v~ 453 (647)
...+|||.|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||+.|++. .+.+ +.|.|.
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~-~~~g~~~~l~V~ 270 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNV-IPEGGSQPLTVR 270 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCC-ccCCCceeEEEE
Confidence 1368999999999999999999999999999999999889999999999999999999999999996 4655 789999
Q ss_pred eecCC
Q 006380 454 SVTDH 458 (647)
Q Consensus 454 ~~~~~ 458 (647)
++...
T Consensus 271 ~a~~~ 275 (346)
T TIGR01659 271 LAEEH 275 (346)
T ss_pred ECCcc
Confidence 98854
No 20
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.94 E-value=9.2e-26 Score=229.32 Aligned_cols=167 Identities=23% Similarity=0.357 Sum_probs=146.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEE
Q 006380 373 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 452 (647)
Q Consensus 373 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v 452 (647)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|..||+.|++. .|.+++|.|
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~-~l~gr~i~V 181 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGI-TVRNKRLKV 181 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCC-ccCCceeee
Confidence 3344689999999999999999999999999999999999889999999999999999999999999995 799999999
Q ss_pred EeecCCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCCC
Q 006380 453 SSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAV 532 (647)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (647)
.|+.+...
T Consensus 182 ~~a~p~~~------------------------------------------------------------------------ 189 (346)
T TIGR01659 182 SYARPGGE------------------------------------------------------------------------ 189 (346)
T ss_pred eccccccc------------------------------------------------------------------------
Confidence 98752100
Q ss_pred CCCCCCCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEE
Q 006380 533 PVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLR 607 (647)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~ 607 (647)
.....+|||.|| |..++ +++|+++|++||.|+.|.|..+ ++|+|||+
T Consensus 190 ------------------~~~~~~lfV~nL--p~~vt--------ee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~ 241 (346)
T TIGR01659 190 ------------------SIKDTNLYVTNL--PRTIT--------DDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVR 241 (346)
T ss_pred ------------------ccccceeEEeCC--CCccc--------HHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEE
Confidence 011246999999 98887 7999999999999999988654 46899999
Q ss_pred eCCHHHHHHHHHHhcCcccCC--eEEEEEEcChhh
Q 006380 608 FESTEAAASAQRAMHMRWFAR--RLISAIFMKPED 640 (647)
Q Consensus 608 F~~~~~A~~A~~~l~g~~~~G--r~l~v~~~~~~~ 640 (647)
|.+.++|.+||+.||+..|.| +.|+|.++.+..
T Consensus 242 F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 242 FNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred ECCHHHHHHHHHHhCCCccCCCceeEEEEECCccc
Confidence 999999999999999999876 799999987653
No 21
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.94 E-value=7.7e-26 Score=248.57 Aligned_cols=184 Identities=17% Similarity=0.252 Sum_probs=133.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccC------------CCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCe
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEPF------------GPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL 443 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~~------------g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~ 443 (647)
..++|||+|||+.+++++|.++|..+ +.|..+.+. ..+|||||+|.+.++|..|| .|+| +
T Consensus 174 ~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~------~~kg~afVeF~~~e~A~~Al-~l~g-~ 245 (509)
T TIGR01642 174 QARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN------KEKNFAFLEFRTVEEATFAM-ALDS-I 245 (509)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC------CCCCEEEEEeCCHHHHhhhh-cCCC-e
Confidence 35899999999999999999999864 344445443 34799999999999999999 6999 5
Q ss_pred eeCCeEEEEEeecCCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccc
Q 006380 444 EIVGRTLKVSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAIS 523 (647)
Q Consensus 444 ~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (647)
.|.|..|.|....+............. . .....
T Consensus 246 ~~~g~~l~v~r~~~~~~~~~~~~~~~~-------------------------------------~----------~~~~~ 278 (509)
T TIGR01642 246 IYSNVFLKIRRPHDYIPVPQITPEVSQ-------------------------------------K----------NPDDN 278 (509)
T ss_pred EeeCceeEecCccccCCccccCCCCCC-------------------------------------C----------CCccc
Confidence 799999999765532211000000000 0 00000
Q ss_pred cCccCCCCCCCCCCCCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC----
Q 006380 524 LPVVGQPAVPVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR---- 599 (647)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~---- 599 (647)
....+. +.... ........|||.|| |..++ +++|.++|+.||.|..|.|..+
T Consensus 279 ~~~~~~-------------~~~~~-~~~~~~~~l~v~nl--p~~~~--------~~~l~~~f~~~G~i~~~~~~~~~~~g 334 (509)
T TIGR01642 279 AKNVEK-------------LVNST-TVLDSKDRIYIGNL--PLYLG--------EDQIKELLESFGDLKAFNLIKDIATG 334 (509)
T ss_pred cccccc-------------ccccc-cCCCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCeeEEEEEecCCCC
Confidence 000000 00000 01234468999999 98888 7999999999999999988543
Q ss_pred -CCceEEEEeCCHHHHHHHHHHhcCcccCCeEEEEEEcCh
Q 006380 600 -SAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKP 638 (647)
Q Consensus 600 -~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l~v~~~~~ 638 (647)
++|+|||+|.+.++|..|+..|||..|.|+.|.|.++..
T Consensus 335 ~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 335 LSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred CcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 589999999999999999999999999999999999753
No 22
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.94 E-value=1.6e-25 Score=248.04 Aligned_cols=214 Identities=23% Similarity=0.339 Sum_probs=177.4
Q ss_pred ccccceeeEEecCCcCHHHHH-HhcCccccCccccCCCChhhhhhhcccccCCCCCCCCCCCCCceEEEcCCCCCCCHHH
Q 006380 315 TVLVSYRYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQ 393 (647)
Q Consensus 315 ~~~~~~afv~f~~~~~a~~al-~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~ 393 (647)
+...+||||+|.+.++|..|+ .+++..+.|+.|.|.++........ ....+|||+|||..+++++
T Consensus 39 ~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~~~~--------------~~~~~vfV~nLp~~~~~~~ 104 (562)
T TIGR01628 39 RRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDPSLRR--------------SGVGNIFVKNLDKSVDNKA 104 (562)
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccccccc--------------cCCCceEEcCCCccCCHHH
Confidence 345679999999999999999 5999999999999988643221110 0125799999999999999
Q ss_pred HHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecCCCCCCCccccCCCCCC
Q 006380 394 LRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSADFDD 473 (647)
Q Consensus 394 l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~ 473 (647)
|+++|+.||.|..|.|+.+. +|.++|||||+|.+.++|..|+..|+|. .+.|+.|.|..........
T Consensus 105 L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~-~~~~~~i~v~~~~~~~~~~----------- 171 (562)
T TIGR01628 105 LFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGM-LLNDKEVYVGRFIKKHERE----------- 171 (562)
T ss_pred HHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhccc-EecCceEEEeccccccccc-----------
Confidence 99999999999999999886 8889999999999999999999999995 7999999996654211100
Q ss_pred CCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCCCCCCCCCCCCcccccccccCCC
Q 006380 474 DDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPAVTAPVIPNMAAEFIGSP 553 (647)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (647)
. . ....
T Consensus 172 -----------------------~---------------------------------------~------------~~~~ 177 (562)
T TIGR01628 172 -----------------------A---------------------------------------A------------PLKK 177 (562)
T ss_pred -----------------------c---------------------------------------c------------cccC
Confidence 0 0 0122
Q ss_pred CceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC----CCceEEEEeCCHHHHHHHHHHhcCcccC--
Q 006380 554 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR----SAGFVYLRFESTEAAASAQRAMHMRWFA-- 627 (647)
Q Consensus 554 ~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~----~~g~afV~F~~~~~A~~A~~~l~g~~~~-- 627 (647)
.++|+|+|| |..++ +++|.++|+.||.|..|.+..+ ++|+|||+|.+.++|.+|++.|+|..|.
T Consensus 178 ~~~l~V~nl--~~~~t--------ee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~ 247 (562)
T TIGR01628 178 FTNLYVKNL--DPSVN--------EDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLA 247 (562)
T ss_pred CCeEEEeCC--CCcCC--------HHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEeccc
Confidence 347999999 88887 7999999999999999988654 4789999999999999999999999999
Q ss_pred --CeEEEEEEcChh
Q 006380 628 --RRLISAIFMKPE 639 (647)
Q Consensus 628 --Gr~l~v~~~~~~ 639 (647)
|+.|.|..+...
T Consensus 248 ~~g~~l~v~~a~~k 261 (562)
T TIGR01628 248 KEGKKLYVGRAQKR 261 (562)
T ss_pred ccceeeEeecccCh
Confidence 999999887544
No 23
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.92 E-value=2.1e-24 Score=230.15 Aligned_cols=172 Identities=20% Similarity=0.412 Sum_probs=144.4
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
.++|||+|||+.+++++|+++|..||.|..|.|+.++.++.++|||||+|.+.++|..|+..|||. .|.|+.|.|.+..
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~-~i~GR~IkV~rp~ 185 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQ-MLGGRNIKVGRPS 185 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCe-EEecceeeecccc
Confidence 479999999999999999999999999999999999999999999999999999999999999995 7999999997543
Q ss_pred CCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCCCCCCC
Q 006380 457 DHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPA 536 (647)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (647)
....... . .
T Consensus 186 ~~p~a~~-----------------------------------------------~------------~------------ 194 (612)
T TIGR01645 186 NMPQAQP-----------------------------------------------I------------I------------ 194 (612)
T ss_pred ccccccc-----------------------------------------------c------------c------------
Confidence 1100000 0 0
Q ss_pred CCCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCH
Q 006380 537 VTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFEST 611 (647)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~ 611 (647)
..... ......+|||.|| |..++ +++|+++|+.||.|+.|.|..+ ++|||||+|.+.
T Consensus 195 ------~~~~~--~~~~~~rLfVgnL--p~~vt--------eedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~ 256 (612)
T TIGR01645 195 ------DMVQE--EAKKFNRIYVASV--HPDLS--------ETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNL 256 (612)
T ss_pred ------ccccc--cccccceEEeecC--CCCCC--------HHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCH
Confidence 00000 0122357999999 88887 7999999999999999999654 589999999999
Q ss_pred HHHHHHHHHhcCcccCCeEEEEEEcCh
Q 006380 612 EAAASAQRAMHMRWFARRLISAIFMKP 638 (647)
Q Consensus 612 ~~A~~A~~~l~g~~~~Gr~l~v~~~~~ 638 (647)
++|.+|+..|||..|+|+.|+|.++..
T Consensus 257 e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 257 QSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred HHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 999999999999999999999998664
No 24
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.9e-24 Score=198.30 Aligned_cols=180 Identities=26% Similarity=0.398 Sum_probs=155.2
Q ss_pred CCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeeccc
Q 006380 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVG 297 (647)
Q Consensus 218 ~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (647)
..+--|||+.|...++.++|++.|.+||.|.+++|++|..|++|+|||
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYg-------------------------------- 107 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYG-------------------------------- 107 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCccccee--------------------------------
Confidence 346789999999999999999999999999999999999999999999
Q ss_pred ceEeecCCccccccCCcccccceeeEEecCCcCHHHHH-HhcCccccCccccCCCChhhhhhhcccccCCCCCCCCCCCC
Q 006380 298 MVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAI 376 (647)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al-~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (647)
||-|-+.++|..|+ .|||+=|.++.|+.+++..+..........-...-....+.
T Consensus 108 ------------------------FVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~ 163 (321)
T KOG0148|consen 108 ------------------------FVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPD 163 (321)
T ss_pred ------------------------EEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCCCCccHHHHhccCCCC
Confidence 99999999999999 59999999999999998665421111111111122334556
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
+++|||+||+..+++++|++.|+.||+|.+|+|.++ +|||||.|.+.|.|..||-.+|+. .|.|+.|++.|.+
T Consensus 164 NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNnt-ei~G~~VkCsWGK 236 (321)
T KOG0148|consen 164 NTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNT-EIGGQLVRCSWGK 236 (321)
T ss_pred CceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCc-eeCceEEEEeccc
Confidence 799999999999999999999999999999999998 799999999999999999999997 8999999999988
Q ss_pred CCCC
Q 006380 457 DHVG 460 (647)
Q Consensus 457 ~~~~ 460 (647)
....
T Consensus 237 e~~~ 240 (321)
T KOG0148|consen 237 EGDD 240 (321)
T ss_pred cCCC
Confidence 5443
No 25
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.91 E-value=1.6e-23 Score=216.84 Aligned_cols=271 Identities=22% Similarity=0.333 Sum_probs=204.7
Q ss_pred CCCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecc
Q 006380 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEV 296 (647)
Q Consensus 217 ~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (647)
.+....++|+|||..+..+.|..+|..||.|..|.|+.. |.
T Consensus 382 ~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~-------G~-------------------------------- 422 (725)
T KOG0110|consen 382 ERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG-------GT-------------------------------- 422 (725)
T ss_pred hhhcceeeeccCccccccHHHHHHhhcccccceeecCcc-------cc--------------------------------
Confidence 566788999999999999999999999999999955421 22
Q ss_pred cceEeecCCccccccCCcccccceeeEEecCCcCHHHHHH-hcCccccCccccCCCChhhhhhhcc-------c------
Q 006380 297 GMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQS-------N------ 362 (647)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~-l~g~~~~g~~l~v~~~~~~~~~~~~-------~------ 362 (647)
.|+|+|.++.+|..|+. |....+...++.+.+++.......+ .
T Consensus 423 -----------------------~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~e 479 (725)
T KOG0110|consen 423 -----------------------GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKME 479 (725)
T ss_pred -----------------------eeeeeecCccchHHHHHHhchhhhccCccccccChhhhccCCccccccccccccccc
Confidence 13999999999999994 8888887777777654322221000 0
Q ss_pred --ccC--------CCCCCC-------C---CCCC-CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCC---CCe
Q 006380 363 --TSA--------GGTATG-------P---YGAI-DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIET---GQC 418 (647)
Q Consensus 363 --~~~--------~~~~~~-------~---~~~~-~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~---~~~ 418 (647)
+.. ...... . .... .+.|||.||++.++.++|...|.++|.|.+|.|...+.. -.+
T Consensus 480 e~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lS 559 (725)
T KOG0110|consen 480 ENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLS 559 (725)
T ss_pred cCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccc
Confidence 000 000000 0 0011 233999999999999999999999999999988765421 124
Q ss_pred eeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecCCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCC
Q 006380 419 KGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGI 498 (647)
Q Consensus 419 ~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (647)
.|||||+|.+.++|+.|+..|+|+ .|+|+.|.|.++.. .......
T Consensus 560 mGfgFVEF~~~e~A~~a~k~lqgt-vldGH~l~lk~S~~--k~~~~~g-------------------------------- 604 (725)
T KOG0110|consen 560 MGFGFVEFAKPESAQAALKALQGT-VLDGHKLELKISEN--KPASTVG-------------------------------- 604 (725)
T ss_pred cceeEEEecCHHHHHHHHHHhcCc-eecCceEEEEeccC--ccccccc--------------------------------
Confidence 599999999999999999999997 59999999999751 0000000
Q ss_pred ccccCCcCCCCCCCCCccccccccccCccCCCCCCCCCCCCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhH
Q 006380 499 ATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQ 578 (647)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~ 578 (647)
.. .+ .......|+|+|| |...+ .
T Consensus 605 --------------------------------------K~---~~------~kk~~tKIlVRNi--pFeAt--------~ 627 (725)
T KOG0110|consen 605 --------------------------------------KK---KS------KKKKGTKILVRNI--PFEAT--------K 627 (725)
T ss_pred --------------------------------------cc---cc------cccccceeeeecc--chHHH--------H
Confidence 00 00 0112347999999 88776 7
Q ss_pred HHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCHHHHHHHHHHhcCcccCCeEEEEEEcChhhh
Q 006380 579 GDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDY 641 (647)
Q Consensus 579 edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l~v~~~~~~~~ 641 (647)
.+|+++|..||.|..|.|+.. ++|+|||+|-++.+|.+|+.+|.+..|-|+.|+++|+..+..
T Consensus 628 rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 628 REVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred HHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccchH
Confidence 899999999999999999754 489999999999999999999999999999999999987764
No 26
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.91 E-value=1.5e-23 Score=219.49 Aligned_cols=184 Identities=30% Similarity=0.465 Sum_probs=143.9
Q ss_pred CCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecccc
Q 006380 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVGM 298 (647)
Q Consensus 219 ~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (647)
...+|||+|||..+++++|..+|.+||.|..+.++.+..++.++|||
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~--------------------------------- 134 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVG--------------------------------- 134 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEE---------------------------------
Confidence 45689999999999999999999999999999999999889999999
Q ss_pred eEeecCCccccccCCcccccceeeEEecCCcCHHHHH-HhcCccccCc--cccCCCChhhhhh------h----------
Q 006380 299 VFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAI-ALSGQLLLGQ--PVMVKPSEAEKNL------V---------- 359 (647)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al-~l~g~~~~g~--~l~v~~~~~~~~~------~---------- 359 (647)
||+|.+.++|..|+ .|+|..+.|. .|.|.++...... .
T Consensus 135 -----------------------fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 191 (352)
T TIGR01661 135 -----------------------FIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQT 191 (352)
T ss_pred -----------------------EEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCccc
Confidence 88888888888888 4777777653 3333322110000 0
Q ss_pred cc---------------------------------------------------cccC---------CCCCCCCCCCCCce
Q 006380 360 QS---------------------------------------------------NTSA---------GGTATGPYGAIDRK 379 (647)
Q Consensus 360 ~~---------------------------------------------------~~~~---------~~~~~~~~~~~~~~ 379 (647)
.. .... .+.........+.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (352)
T TIGR01661 192 TRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYC 271 (352)
T ss_pred CCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcE
Confidence 00 0000 00000000122347
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecCCC
Q 006380 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHV 459 (647)
Q Consensus 380 l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~~~ 459 (647)
|||+|||+.+++++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||..|||. .|+|+.|.|.|+..+.
T Consensus 272 lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~-~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 272 IFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGY-TLGNRVLQVSFKTNKA 350 (352)
T ss_pred EEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCC-EECCeEEEEEEccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999995 8999999999988543
No 27
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=2.1e-24 Score=215.92 Aligned_cols=183 Identities=25% Similarity=0.419 Sum_probs=148.9
Q ss_pred CceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecccce
Q 006380 220 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVGMV 299 (647)
Q Consensus 220 ~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (647)
-..|+|+|||+.+...+|..+|+.||.|..|.|++...++.+ |||
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFa---------------------------------- 161 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GFA---------------------------------- 161 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCcc-ceE----------------------------------
Confidence 579999999999999999999999999999999987776665 888
Q ss_pred EeecCCccccccCCcccccceeeEEecCCcCHHHHHH-hcCccccCccccCCCChhhhhhhccc----------------
Q 006380 300 FFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSN---------------- 362 (647)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~-l~g~~~~g~~l~v~~~~~~~~~~~~~---------------- 362 (647)
||+|....+|..||. +||..|.|++|.|.|+.+........
T Consensus 162 ----------------------FV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed 219 (678)
T KOG0127|consen 162 ----------------------FVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEED 219 (678)
T ss_pred ----------------------EEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhh
Confidence 999999999999995 99999999999998765432211100
Q ss_pred ---------------------------c----------cC-----CCCC--CC-------C-------CCCCCceEEEcC
Q 006380 363 ---------------------------T----------SA-----GGTA--TG-------P-------YGAIDRKLYVGN 384 (647)
Q Consensus 363 ---------------------------~----------~~-----~~~~--~~-------~-------~~~~~~~l~v~n 384 (647)
. .. .... +. . ......+|||+|
T Consensus 220 ~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRN 299 (678)
T KOG0127|consen 220 KEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRN 299 (678)
T ss_pred cccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEec
Confidence 0 00 0000 00 0 001147999999
Q ss_pred CCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHH-----cCCeeeCCeEEEEEeecCCC
Q 006380 385 LHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL-----NGKLEIVGRTLKVSSVTDHV 459 (647)
Q Consensus 385 Lp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l-----~g~~~~~g~~l~v~~~~~~~ 459 (647)
||+.+++++|.+.|++||.|..+.|+.++.|+.++|.|||.|.+...|+.||.+. .|.+.|.|+.|.|..+....
T Consensus 300 L~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 300 LPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRK 379 (678)
T ss_pred CCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchH
Confidence 9999999999999999999999999999999999999999999999999999776 23367999999999987643
No 28
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.89 E-value=1.7e-21 Score=189.85 Aligned_cols=185 Identities=24% Similarity=0.407 Sum_probs=142.6
Q ss_pred CCCCCCCCCCceEEeccCCccCCHHHHHHHHH-hcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeee
Q 006380 211 EPEADPERDQRTVFAYQMPLKATERDVYEFFS-KAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIK 289 (647)
Q Consensus 211 ~~~~~~~~~~~~v~i~nlp~~~te~~l~~~f~-~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~ 289 (647)
+.-..+....+.+||.|||++..+.+|+++|. +.|.|+-|.++.|.. |+++|||
T Consensus 35 s~~gn~~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~-GK~rGca------------------------ 89 (608)
T KOG4212|consen 35 SQGGNVAARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES-GKARGCA------------------------ 89 (608)
T ss_pred CCCCCcccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC-CCcCCce------------------------
Confidence 33444556678899999999999999999995 678999999999965 8999999
Q ss_pred eeeeecccceEeecCCccccccCCcccccceeeEEecCCcCHHHHHH-hcCccccCccccCCCChhhhhhhc--------
Q 006380 290 FFLVAEVGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQ-------- 360 (647)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~-l~g~~~~g~~l~v~~~~~~~~~~~-------- 360 (647)
.|+|++++.+++|++ ||...+.|++|.|+-....+....
T Consensus 90 --------------------------------vVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d~q~~~~~~~~r~g~ 137 (608)
T KOG4212|consen 90 --------------------------------VVEFKDPENVQKALEKLNKYEVNGRELVVKEDHDEQRDQYGRIVRDGG 137 (608)
T ss_pred --------------------------------EEEeeCHHHHHHHHHHhhhccccCceEEEeccCchhhhhhhheeeccC
Confidence 999999999999995 999999999998863221100000
Q ss_pred ---------------------------------------c--cccC--------------C------CCCCCCCCCCCce
Q 006380 361 ---------------------------------------S--NTSA--------------G------GTATGPYGAIDRK 379 (647)
Q Consensus 361 ---------------------------------------~--~~~~--------------~------~~~~~~~~~~~~~ 379 (647)
. +... . -.......|...+
T Consensus 138 ~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~Flr~~h~f~pPl~~k 217 (608)
T KOG4212|consen 138 GGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASFLRSLHIFSPPLHNK 217 (608)
T ss_pred cccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhhhhhccCCCCCccce
Confidence 0 0000 0 0000112344678
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEe
Q 006380 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 454 (647)
Q Consensus 380 l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~ 454 (647)
+||.||.+.+....|++.|.-.|.|+.|-+--++ .|.++|+|.++|.++-.|..||..|++. .+..+...+..
T Consensus 218 ~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idK-eG~s~G~~vi~y~hpveavqaIsml~~~-g~~~~~~~~Rl 290 (608)
T KOG4212|consen 218 VFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEAVQAISMLDRQ-GLFDRRMTVRL 290 (608)
T ss_pred eeeeccccccchHHHHHHhccceeeeeeceeecc-ccccCCeeEEEecchHHHHHHHHhhccC-CCccccceeec
Confidence 9999999999999999999999999999888887 6789999999999999999999999875 35555555443
No 29
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=9e-23 Score=198.97 Aligned_cols=167 Identities=25% Similarity=0.397 Sum_probs=143.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCC--eEEEE
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG--RTLKV 452 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g--~~l~v 452 (647)
...-+|||+.||..++|.||+++|++||.|.+|.|++|+.++.++|+|||.|++.++|.+|+.+||+.+.|-| .+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 3347899999999999999999999999999999999999999999999999999999999999999866766 57888
Q ss_pred EeecCCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCCC
Q 006380 453 SSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAV 532 (647)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (647)
.|+......
T Consensus 112 k~Ad~E~er----------------------------------------------------------------------- 120 (510)
T KOG0144|consen 112 KYADGERER----------------------------------------------------------------------- 120 (510)
T ss_pred cccchhhhc-----------------------------------------------------------------------
Confidence 887621100
Q ss_pred CCCCCCCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC----CCceEEEEe
Q 006380 533 PVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR----SAGFVYLRF 608 (647)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~----~~g~afV~F 608 (647)
-...+.|||+-| +...+ +.+|+++|++||.|+.|.|.++ ++|||||+|
T Consensus 121 ------------------~~~e~KLFvg~l--sK~~t--------e~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~f 172 (510)
T KOG0144|consen 121 ------------------IVEERKLFVGML--SKQCT--------ENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKF 172 (510)
T ss_pred ------------------cccchhhhhhhc--ccccc--------HHHHHHHHHhhCccchhhheecccccccceeEEEE
Confidence 012357999998 77666 7999999999999999988554 799999999
Q ss_pred CCHHHHHHHHHHhcCcc-cCC--eEEEEEEcChhh
Q 006380 609 ESTEAAASAQRAMHMRW-FAR--RLISAIFMKPED 640 (647)
Q Consensus 609 ~~~~~A~~A~~~l~g~~-~~G--r~l~v~~~~~~~ 640 (647)
.+.+.|..||+.|||.. +.| .+|.|-|++++.
T Consensus 173 stke~A~~Aika~ng~~tmeGcs~PLVVkFADtqk 207 (510)
T KOG0144|consen 173 STKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQK 207 (510)
T ss_pred ehHHHHHHHHHhhccceeeccCCCceEEEecccCC
Confidence 99999999999999976 554 789999998875
No 30
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.88 E-value=1.5e-22 Score=175.51 Aligned_cols=169 Identities=30% Similarity=0.492 Sum_probs=150.5
Q ss_pred CCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecccc
Q 006380 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVGM 298 (647)
Q Consensus 219 ~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (647)
...+||||||+..+++..|.++|.++|+|+++.|+.|+.|..++|||
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGyg--------------------------------- 54 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYG--------------------------------- 54 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhccccccee---------------------------------
Confidence 45799999999999999999999999999999999999999999999
Q ss_pred eEeecCCccccccCCcccccceeeEEecCCcCHHHHHH-hcCccccCccccCCCChhhhhhhcccccCCCCCCCCCCCCC
Q 006380 299 VFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAID 377 (647)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~-l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (647)
|++|.+.++|.-|++ ||...+.|++|+|..+...+... ..+
T Consensus 55 -----------------------F~Ef~~eedadYAikiln~VkLYgrpIrv~kas~~~~nl---------------~vg 96 (203)
T KOG0131|consen 55 -----------------------FAEFRTEEDADYAIKILNMVKLYGRPIRVNKASAHQKNL---------------DVG 96 (203)
T ss_pred -----------------------EEEEechhhhHHHHHHHHHHHhcCceeEEEecccccccc---------------ccc
Confidence 999999999999997 88889999999998764211111 112
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeE-EEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVEL-VQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~-v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
..|||+||.+.+++..|.+.|+.||.|.. ..|+++..||.++|++||-|.+.+.+.+|+..++|+ .+..++|.|.|+.
T Consensus 97 anlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq-~l~nr~itv~ya~ 175 (203)
T KOG0131|consen 97 ANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQ-YLCNRPITVSYAF 175 (203)
T ss_pred ccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccc-hhcCCceEEEEEE
Confidence 68999999999999999999999999855 578889889999999999999999999999999997 5999999999998
Q ss_pred CCC
Q 006380 457 DHV 459 (647)
Q Consensus 457 ~~~ 459 (647)
.+.
T Consensus 176 k~~ 178 (203)
T KOG0131|consen 176 KKD 178 (203)
T ss_pred ecC
Confidence 544
No 31
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.87 E-value=1.9e-22 Score=203.59 Aligned_cols=175 Identities=24% Similarity=0.331 Sum_probs=128.8
Q ss_pred CceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecccce
Q 006380 220 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVGMV 299 (647)
Q Consensus 220 ~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (647)
-..||||||-+++|+++|..+|++||.|..|.++.|..||.++|||
T Consensus 278 ~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfG---------------------------------- 323 (549)
T KOG0147|consen 278 MRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFG---------------------------------- 323 (549)
T ss_pred hhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcc----------------------------------
Confidence 3449999999999999999999999999999999999999999999
Q ss_pred EeecCCccccccCCcccccceeeEEecCCcCHHHHH-HhcCccccCccccCCCChhh-----------------------
Q 006380 300 FFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAE----------------------- 355 (647)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al-~l~g~~~~g~~l~v~~~~~~----------------------- 355 (647)
||+|.+.++|..|+ .|||..|.|+.|+|......
T Consensus 324 ----------------------fi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~ 381 (549)
T KOG0147|consen 324 ----------------------FITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSL 381 (549)
T ss_pred ----------------------eEEEecHHHHHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhcccccc
Confidence 66666666666665 46666666665555210000
Q ss_pred ---------hhhh-------------------------ccc------ccCCCCCCCCCCCCCceEEEcCCCCCCCH----
Q 006380 356 ---------KNLV-------------------------QSN------TSAGGTATGPYGAIDRKLYVGNLHFNMTE---- 391 (647)
Q Consensus 356 ---------~~~~-------------------------~~~------~~~~~~~~~~~~~~~~~l~v~nLp~~~~e---- 391 (647)
.... ..+ ...+..+.....+++.|+.|.||-...++
T Consensus 382 ~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n 461 (549)
T KOG0147|consen 382 GSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPN 461 (549)
T ss_pred ccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcc
Confidence 0000 000 00001111122256789999999444333
Q ss_pred ------HHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 392 ------TQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 392 ------~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
+||.+.|.+||.|.+|.|-++ +-|++||.|.+.+.|..|+.+|||. ||.|+.|.+.|..
T Consensus 462 ~d~eI~edV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~alhgr-WF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 462 WDQEIREDVIEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKALHGR-WFAGRMITAKYLP 526 (549)
T ss_pred hhhHHHHHHHHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHHHhhh-hhccceeEEEEee
Confidence 788999999999999999554 3599999999999999999999997 7999999999975
No 32
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=2.4e-21 Score=197.91 Aligned_cols=205 Identities=23% Similarity=0.378 Sum_probs=172.7
Q ss_pred ccceeeEEecCCcCHHHHH-HhcCccccCccccCCCChhhhhhhcccccCCCCCCCCCCCCCceEEEcCCCCCCCHHHHH
Q 006380 317 LVSYRYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLR 395 (647)
Q Consensus 317 ~~~~afv~f~~~~~a~~al-~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~ 395 (647)
..+||||+|.++++|..|| ++|...+.|.++.|.|+.... ..|||.||+..++..+|.
T Consensus 36 slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~---------------------~~~~i~nl~~~~~~~~~~ 94 (369)
T KOG0123|consen 36 SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP---------------------SLVFIKNLDESIDNKSLY 94 (369)
T ss_pred ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC---------------------ceeeecCCCcccCcHHHH
Confidence 7889999999999999999 599999999999999885432 229999999999999999
Q ss_pred HhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecCCCCCCCccccCCCCCCCC
Q 006380 396 KLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSADFDDDD 475 (647)
Q Consensus 396 ~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~ 475 (647)
++|+.||.|.+|++..+. .| ++|| ||+|.+.+.|.+|+..+||. .+.|.+|.|...............
T Consensus 95 d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~-ll~~kki~vg~~~~~~er~~~~~~-------- 162 (369)
T KOG0123|consen 95 DTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGM-LLNGKKIYVGLFERKEEREAPLGE-------- 162 (369)
T ss_pred HHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCc-ccCCCeeEEeeccchhhhcccccc--------
Confidence 999999999999999986 55 8999 99999999999999999996 599999999887643332211100
Q ss_pred CCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCCCCCCCCCCCCcccccccccCCCCc
Q 006380 476 GGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPAVTAPVIPNMAAEFIGSPSE 555 (647)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (647)
....-.
T Consensus 163 --------------------------------------------------------------------------~~~~~t 168 (369)
T KOG0123|consen 163 --------------------------------------------------------------------------YKKRFT 168 (369)
T ss_pred --------------------------------------------------------------------------hhhhhh
Confidence 001123
Q ss_pred eEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC----CCceEEEEeCCHHHHHHHHHHhcCcccCCeEE
Q 006380 556 CLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR----SAGFVYLRFESTEAAASAQRAMHMRWFARRLI 631 (647)
Q Consensus 556 ~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~----~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l 631 (647)
.+++.|. +..++ .+.|..+|..||.|.++.++.+ ++|++||.|.++++|..|+..|+|..+.|..+
T Consensus 169 ~v~vk~~--~~~~~--------~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~ 238 (369)
T KOG0123|consen 169 NVYVKNL--EEDST--------DEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKEL 238 (369)
T ss_pred hhheecc--ccccc--------hHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccce
Confidence 5788888 65555 6899999999999999998754 48899999999999999999999999999998
Q ss_pred EEEEcCh
Q 006380 632 SAIFMKP 638 (647)
Q Consensus 632 ~v~~~~~ 638 (647)
-|.-+..
T Consensus 239 ~V~~aqk 245 (369)
T KOG0123|consen 239 YVGRAQK 245 (369)
T ss_pred eeccccc
Confidence 8876544
No 33
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.86 E-value=1.5e-20 Score=182.18 Aligned_cols=339 Identities=17% Similarity=0.174 Sum_probs=186.9
Q ss_pred CCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCcccc-ccccccCceeeeeeeeecc
Q 006380 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTL-HSCLINSCCVIKFFLVAEV 296 (647)
Q Consensus 218 ~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 296 (647)
.+++.|.++|||.++||.+|..++.+||.|+.+.++..++ .||+.|+....|.- ...+-...+.+....
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~---- 95 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQP---- 95 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcc----
Confidence 4689999999999999999999999999999999988653 56555544444321 000000000000000
Q ss_pred cceEeecCCccccccCCcccccceeeEEecCCcCHHHHHH--hcCccccCccccCCCChhhhhhhcccccCCCCCCC-CC
Q 006380 297 GMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA--LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATG-PY 373 (647)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~--l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~-~~ 373 (647)
-||+|.+.. -++ -.-.++.|+.+.+..+...........+ ....+. ..
T Consensus 96 ------------------------~yiq~sn~~----~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~-~~~~G~~~~ 146 (492)
T KOG1190|consen 96 ------------------------IYIQYSNHS----ELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSAS-AVVVGNEDG 146 (492)
T ss_pred ------------------------eeehhhhHH----HHhccCchhhhhhhhHHhhhhcccccccccccc-cccccccCC
Confidence 044441110 000 0011122333322221111110000000 000011 11
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCC-eEEEE
Q 006380 374 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG-RTLKV 452 (647)
Q Consensus 374 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g-~~l~v 452 (647)
..+--.++|.|+-+.++-+-|..+|++||.|..|.-.... ..-.|+|+|.+.+.|+.|-.+|+|+=.++| ++|+|
T Consensus 147 ~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Kn----n~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrI 222 (492)
T KOG1190|consen 147 PNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKN----NGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRI 222 (492)
T ss_pred CceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecc----cchhhhhhccchhhHHHHHHhccCCcccCceeEEEe
Confidence 1123567889999999999999999999999877543321 233689999999999999999999822344 67888
Q ss_pred EeecCCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCCC
Q 006380 453 SSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAV 532 (647)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (647)
.|++-..-. ....+-...+.....++..... +.+. ..+.+..+..+. +.|.+..
T Consensus 223 d~Sklt~Ln--vKynndkSRDyTnp~LP~gd~~-p~l~---------~~~~aa~~~~~~--------------~~g~p~a 276 (492)
T KOG1190|consen 223 DFSKLTDLN--VKYNNDKSRDYTNPDLPVGDGQ-PSLD---------QLMAAAFGSVPA--------------VHGAPLA 276 (492)
T ss_pred ehhhcccce--eeccccccccccCCCCCCCccc-cccc---------hhhhcccccccc--------------ccCCccc
Confidence 887631100 0000000000000001000000 0000 000000000000 0011111
Q ss_pred CCCCCCCCCcccccccccCCC--CceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCC
Q 006380 533 PVPAVTAPVIPNMAAEFIGSP--SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFES 610 (647)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~--~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~ 610 (647)
..++... ..........+ +.+|.|.|| .+..+| .+-|..+|.-||.|.+|+|..+.+.-|+|+|++
T Consensus 277 ip~~~~~---a~~a~~~~~~~~~n~vllvsnl-n~~~VT--------~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd 344 (492)
T KOG1190|consen 277 IPSGAAG---ANAADGKIESPSANVVLLVSNL-NEEAVT--------PDVLFTLFGVYGDVQRVKILYNKKDNALIQMSD 344 (492)
T ss_pred CCccchh---hcccccccccCCCceEEEEecC-chhccc--------hhHHHHHHhhhcceEEEEeeecCCcceeeeecc
Confidence 1111100 00000111122 578999998 445555 688999999999999999988888999999999
Q ss_pred HHHHHHHHHHhcCcccCCeEEEEEEcC
Q 006380 611 TEAAASAQRAMHMRWFARRLISAIFMK 637 (647)
Q Consensus 611 ~~~A~~A~~~l~g~~~~Gr~l~v~~~~ 637 (647)
...|.-|+.+|+|..+-|+.|+|.|-.
T Consensus 345 ~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 345 GQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred hhHHHHHHHHhhcceecCceEEEeecc
Confidence 999999999999999999999999843
No 34
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=9.1e-21 Score=172.86 Aligned_cols=162 Identities=29% Similarity=0.416 Sum_probs=141.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEe
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 454 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~ 454 (647)
.....|.|..||...|+++|+.+|...|+|++|++++|+.+|.+-||+||-|..+++|.+|+..||| +.+..++|+|+|
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNG-LrLQ~KTIKVSy 117 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNG-LRLQNKTIKVSY 117 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcc-eeeccceEEEEe
Confidence 3347899999999999999999999999999999999999999999999999999999999999999 799999999999
Q ss_pred ecCCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCCCCC
Q 006380 455 VTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPV 534 (647)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (647)
+.+...
T Consensus 118 ARPSs~-------------------------------------------------------------------------- 123 (360)
T KOG0145|consen 118 ARPSSD-------------------------------------------------------------------------- 123 (360)
T ss_pred ccCChh--------------------------------------------------------------------------
Confidence 873110
Q ss_pred CCCCCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEe-----cCCCceEEEEeC
Q 006380 535 PAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVD-----KRSAGFVYLRFE 609 (647)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~-----~~~~g~afV~F~ 609 (647)
.+....|||.+| |...+ ..+|.++|++||.|+--.|. .-++|.+||.|.
T Consensus 124 ----------------~Ik~aNLYvSGl--PktMt--------qkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFD 177 (360)
T KOG0145|consen 124 ----------------SIKDANLYVSGL--PKTMT--------QKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFD 177 (360)
T ss_pred ----------------hhcccceEEecC--Cccch--------HHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEec
Confidence 123346999999 98887 78999999999998755442 337999999999
Q ss_pred CHHHHHHHHHHhcCcccCC--eEEEEEEcC
Q 006380 610 STEAAASAQRAMHMRWFAR--RLISAIFMK 637 (647)
Q Consensus 610 ~~~~A~~A~~~l~g~~~~G--r~l~v~~~~ 637 (647)
...+|..||+.|||..-.| -+|.|-|+.
T Consensus 178 Kr~EAe~AIk~lNG~~P~g~tepItVKFan 207 (360)
T KOG0145|consen 178 KRIEAEEAIKGLNGQKPSGCTEPITVKFAN 207 (360)
T ss_pred chhHHHHHHHhccCCCCCCCCCCeEEEecC
Confidence 9999999999999998776 578888864
No 35
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.85 E-value=2.4e-20 Score=199.17 Aligned_cols=195 Identities=28% Similarity=0.378 Sum_probs=147.9
Q ss_pred CCcCHHHHH-HhcCccccCccccCCCChhhhhhhcccccCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHhhccCCCee
Q 006380 327 DVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVE 405 (647)
Q Consensus 327 ~~~~a~~al-~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~ 405 (647)
..+.|.+|| +++|-.+...+....+..+.... ........++|||+|||..+++++|.++|++||.|.
T Consensus 18 ~~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~-----------~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~ 86 (578)
T TIGR01648 18 PDEAALKALLERTGYTLVQENGQRKYGGPPPGW-----------SGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIY 86 (578)
T ss_pred ccHHHHHHHHHhhCccccccCCcccCCCCCCcc-----------cCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEE
Confidence 345677777 57877665554444332111110 001111238999999999999999999999999999
Q ss_pred EEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeee-CCeEEEEEeecCCCCCCCccccCCCCCCCCCCCcccchh
Q 006380 406 LVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEI-VGRTLKVSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQ 484 (647)
Q Consensus 406 ~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~-~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (647)
.|+|+.+ .++.++|||||+|.+.++|.+||+.|++. .| .|+.|.|..+.
T Consensus 87 ~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~-~i~~Gr~l~V~~S~---------------------------- 136 (578)
T TIGR01648 87 ELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNY-EIRPGRLLGVCISV---------------------------- 136 (578)
T ss_pred EEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCC-eecCCccccccccc----------------------------
Confidence 9999999 59999999999999999999999999995 45 36665553321
Q ss_pred hHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCCCCCCCCCCCCcccccccccCCCCceEEecCcCC
Q 006380 485 SRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPAVTAPVIPNMAAEFIGSPSECLLLKNMFD 564 (647)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~Nl~~ 564 (647)
..+.|||.||
T Consensus 137 --------------------------------------------------------------------~~~rLFVgNL-- 146 (578)
T TIGR01648 137 --------------------------------------------------------------------DNCRLFVGGI-- 146 (578)
T ss_pred --------------------------------------------------------------------cCceeEeecC--
Confidence 1247999999
Q ss_pred CCCCCCchhhhhhHHHHHHHhhccC-CeEEEEEe-c-----CCCceEEEEeCCHHHHHHHHHHhcC--cccCCeEEEEEE
Q 006380 565 PAMETDPDFDLEIQGDVEEECSKYG-RVKHIYVD-K-----RSAGFVYLRFESTEAAASAQRAMHM--RWFARRLISAIF 635 (647)
Q Consensus 565 p~~~~d~~~~~~i~edl~~~f~~~G-~v~~v~l~-~-----~~~g~afV~F~~~~~A~~A~~~l~g--~~~~Gr~l~v~~ 635 (647)
|..++ +++|.++|.+++ .|+.+.+. . .++|+|||+|.+.++|.+|+..|+. ..+.|+.|.|.+
T Consensus 147 P~~~T--------eeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~Vdw 218 (578)
T TIGR01648 147 PKNKK--------REEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDW 218 (578)
T ss_pred Ccchh--------hHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEe
Confidence 88887 789999999986 35555442 1 2489999999999999999998864 357899999999
Q ss_pred cChhh
Q 006380 636 MKPED 640 (647)
Q Consensus 636 ~~~~~ 640 (647)
+.++.
T Consensus 219 A~p~~ 223 (578)
T TIGR01648 219 AEPEE 223 (578)
T ss_pred ecccc
Confidence 88754
No 36
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.84 E-value=9.7e-21 Score=164.31 Aligned_cols=161 Identities=27% Similarity=0.427 Sum_probs=138.0
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecC
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 457 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~ 457 (647)
.+|||+||+..++++-|.++|-+.|+|..+.|+++..++...|||||+|.+.++|.-|++.|+. +.+.|++|+|..+..
T Consensus 10 ~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~-VkLYgrpIrv~kas~ 88 (203)
T KOG0131|consen 10 ATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNM-VKLYGRPIRVNKASA 88 (203)
T ss_pred ceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHH-HHhcCceeEEEeccc
Confidence 7999999999999999999999999999999999999999999999999999999999999996 899999999988751
Q ss_pred CCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCCCCCCCC
Q 006380 458 HVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPAV 537 (647)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (647)
....
T Consensus 89 ~~~n---------------------------------------------------------------------------- 92 (203)
T KOG0131|consen 89 HQKN---------------------------------------------------------------------------- 92 (203)
T ss_pred cccc----------------------------------------------------------------------------
Confidence 0000
Q ss_pred CCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEE-EEe-----cCCCceEEEEeCCH
Q 006380 538 TAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHI-YVD-----KRSAGFVYLRFEST 611 (647)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v-~l~-----~~~~g~afV~F~~~ 611 (647)
...+..|+|+|| +| ++. +..|.+.|+.||.+... .|+ ++++|+|||.|++.
T Consensus 93 -------------l~vganlfvgNL-d~-~vD--------e~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sf 149 (203)
T KOG0131|consen 93 -------------LDVGANLFVGNL-DP-EVD--------EKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASF 149 (203)
T ss_pred -------------cccccccccccc-Cc-chh--------HHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhH
Confidence 011236999999 33 443 67899999999988763 332 34689999999999
Q ss_pred HHHHHHHHHhcCcccCCeEEEEEEcCh
Q 006380 612 EAAASAQRAMHMRWFARRLISAIFMKP 638 (647)
Q Consensus 612 ~~A~~A~~~l~g~~~~Gr~l~v~~~~~ 638 (647)
+.+.+|+..|||..+.+++|+|+|+--
T Consensus 150 easd~ai~s~ngq~l~nr~itv~ya~k 176 (203)
T KOG0131|consen 150 EASDAAIGSMNGQYLCNRPITVSYAFK 176 (203)
T ss_pred HHHHHHHHHhccchhcCCceEEEEEEe
Confidence 999999999999999999999999643
No 37
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.84 E-value=2.8e-19 Score=170.40 Aligned_cols=209 Identities=25% Similarity=0.402 Sum_probs=155.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccCCCeeE--------EEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCC
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEPFGPVEL--------VQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG 447 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g 447 (647)
.+..|||.|||..+|.+++.++|+++|.|.. |.|.++. .|..+|-|+|.|...+++..|++.|++. .|.|
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~-~~rg 210 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDED-ELRG 210 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcc-cccC
Confidence 3578999999999999999999999998854 7787776 6999999999999999999999999996 7999
Q ss_pred eEEEEEeecCCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCcc
Q 006380 448 RTLKVSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVV 527 (647)
Q Consensus 448 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (647)
++|+|..|+-............ .+......-...+.+++ .+ +.+-
T Consensus 211 ~~~rVerAkfq~Kge~~~~~k~-------k~k~~~~kk~~k~q~k~--~d----------w~pd---------------- 255 (382)
T KOG1548|consen 211 KKLRVERAKFQMKGEYDASKKE-------KGKCKDKKKLKKQQQKL--LD----------WRPD---------------- 255 (382)
T ss_pred cEEEEehhhhhhccCcCccccc-------ccccccHHHHHHHHHhh--cc----------cCCC----------------
Confidence 9999999874332221111110 00011111111111111 00 0000
Q ss_pred CCCCCCCCCCCCCCcccccccccCCCCceEEecCcCCCCCCCCc-hhhhhhHHHHHHHhhccCCeEEEEE-ecCCCceEE
Q 006380 528 GQPAVPVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDP-DFDLEIQGDVEEECSKYGRVKHIYV-DKRSAGFVY 605 (647)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~-~~~~~i~edl~~~f~~~G~v~~v~l-~~~~~g~af 605 (647)
-..+.-....++|+|+|||+|....+. .+..+|.+||.+.|++||.|.+|.| .+.+.|.+-
T Consensus 256 -----------------~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvt 318 (382)
T KOG1548|consen 256 -----------------RDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVT 318 (382)
T ss_pred -----------------ccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeE
Confidence 000111244578999999999866554 7888999999999999999999988 456789999
Q ss_pred EEeCCHHHHHHHHHHhcCcccCCeEEEEEEcCh
Q 006380 606 LRFESTEAAASAQRAMHMRWFARRLISAIFMKP 638 (647)
Q Consensus 606 V~F~~~~~A~~A~~~l~g~~~~Gr~l~v~~~~~ 638 (647)
|.|.+.++|..||+.|+|++|+|+.|..+....
T Consensus 319 V~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 319 VSFRNNEEADQCIQTMDGRWFDGRQLTASIWDG 351 (382)
T ss_pred EEeCChHHHHHHHHHhcCeeecceEEEEEEeCC
Confidence 999999999999999999999999999987543
No 38
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.83 E-value=2.2e-18 Score=165.25 Aligned_cols=321 Identities=16% Similarity=0.115 Sum_probs=206.4
Q ss_pred CCCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecc
Q 006380 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEV 296 (647)
Q Consensus 217 ~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (647)
...+-.|.|++|-..++|.+|.+.++.||+|.-|.++..+.
T Consensus 28 ~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r--------------------------------------- 68 (494)
T KOG1456|consen 28 PNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR--------------------------------------- 68 (494)
T ss_pred CCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccc---------------------------------------
Confidence 34677899999999999999999999999988887766432
Q ss_pred cceEeecCCccccccCCcccccceeeEEecCCcCHHHHHH---hcCccccCccccCCCChhhhhhhcccccCCCCCCCCC
Q 006380 297 GMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA---LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPY 373 (647)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~---l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 373 (647)
.|.|+|.+.+.|..|+. -+..++.|+...++++....-.... ...
T Consensus 69 -----------------------~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyStsq~i~R~g---------~es 116 (494)
T KOG1456|consen 69 -----------------------QALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTSQCIERPG---------DES 116 (494)
T ss_pred -----------------------eeeeeeccccchhhheehhccCcccccCchhhcccchhhhhccCC---------CCC
Confidence 23999999999999984 5667888988888877543322111 111
Q ss_pred CCCCceEEE--cCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCC-eeeCCeEE
Q 006380 374 GAIDRKLYV--GNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK-LEIVGRTL 450 (647)
Q Consensus 374 ~~~~~~l~v--~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~-~~~~g~~l 450 (647)
..++..|.+ -|--+.+|.+.|..++...|.|..|.|++. + .-.|.|||.+.+.|++|..+|||. ++-+-++|
T Consensus 117 ~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--n---gVQAmVEFdsv~~AqrAk~alNGADIYsGCCTL 191 (494)
T KOG1456|consen 117 ATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--N---GVQAMVEFDSVEVAQRAKAALNGADIYSGCCTL 191 (494)
T ss_pred CCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--c---ceeeEEeechhHHHHHHHhhcccccccccceeE
Confidence 112244444 455677899999999999999999999775 3 347999999999999999999998 43344789
Q ss_pred EEEeecCCCCCCCccccCCCCCCCCCCCcc--------cchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCcccccccc
Q 006380 451 KVSSVTDHVGTQDTAAKSADFDDDDGGGLA--------LNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAI 522 (647)
Q Consensus 451 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (647)
+|.||++..-.-....+.. |+........ +..+..+. ..+...+ ...|.-....+........
T Consensus 192 KIeyAkP~rlnV~knd~Dt-wDyTlp~~~~~~~~g~~~~~r~~~p~------~~~~~ps--s~~G~h~~y~sg~~~~p~~ 262 (494)
T KOG1456|consen 192 KIEYAKPTRLNVQKNDKDT-WDYTLPDLRGPYDPGRNHYDRQRQPA------PLGYHPS--SRGGGHSGYYSGDRHGPPH 262 (494)
T ss_pred EEEecCcceeeeeecCCcc-ccccCCCCCCCCCCCCCCCccccCCC------ccCCChh--hcCCCCCCCcccccCCCCC
Confidence 9999997542211111111 2221111100 00000000 0000000 0000000000000000111
Q ss_pred ccCccCCCCCCCCCCCCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCc
Q 006380 523 SLPVVGQPAVPVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAG 602 (647)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g 602 (647)
..|..- ..+..-+ ...+++....+..++.|.+| -....+ .+.|..+|+.||+|..|++++...|
T Consensus 263 ~~P~r~-----~~~~~~~--~g~a~p~g~~~g~VmMVyGL--dh~k~N-------~drlFNl~ClYGNV~rvkFmkTk~g 326 (494)
T KOG1456|consen 263 PPPSRY-----RDGYRDG--RGYASPGGGAPGCVMMVYGL--DHGKMN-------CDRLFNLFCLYGNVERVKFMKTKPG 326 (494)
T ss_pred CCCCCC-----ccccccC--CCCCCCCCCCCCcEEEEEec--cccccc-------hhhhhhhhhhcCceeeEEEeecccc
Confidence 111000 0000000 01112234577889999999 332222 6899999999999999999999999
Q ss_pred eEEEEeCCHHHHHHHHHHhcCcccCCeEEEEEEcCh
Q 006380 603 FVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKP 638 (647)
Q Consensus 603 ~afV~F~~~~~A~~A~~~l~g~~~~Gr~l~v~~~~~ 638 (647)
.|.|++.+..+..+|+..||+..+.|.+|.|.+..+
T Consensus 327 tamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 327 TAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred eeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 999999999999999999999999999999987543
No 39
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=2.5e-19 Score=175.96 Aligned_cols=159 Identities=28% Similarity=0.430 Sum_probs=138.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeee-CCeEEEEE
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEI-VGRTLKVS 453 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~-~g~~l~v~ 453 (647)
+..+.|||+.||.++.|++|.-+|++.|.|..++|+.|+.+|.++|||||.|.+.+.|+.|+..||+. .| .|+.|.|.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~-Eir~GK~igvc 159 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNY-EIRPGKLLGVC 159 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCc-cccCCCEeEEE
Confidence 44589999999999999999999999999999999999999999999999999999999999999996 55 68888886
Q ss_pred eecCCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCCCC
Q 006380 454 SVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVP 533 (647)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (647)
.+.
T Consensus 160 ~Sv----------------------------------------------------------------------------- 162 (506)
T KOG0117|consen 160 VSV----------------------------------------------------------------------------- 162 (506)
T ss_pred Eee-----------------------------------------------------------------------------
Confidence 653
Q ss_pred CCCCCCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccC-CeEEEEEecC------CCceEEE
Q 006380 534 VPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYG-RVKHIYVDKR------SAGFVYL 606 (647)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G-~v~~v~l~~~------~~g~afV 606 (647)
.++.|||.|| |.+++ +++|.+++++.+ .|..|.|... .+|||||
T Consensus 163 -------------------an~RLFiG~I--PK~k~--------keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFv 213 (506)
T KOG0117|consen 163 -------------------ANCRLFIGNI--PKTKK--------KEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFV 213 (506)
T ss_pred -------------------ecceeEeccC--Ccccc--------HHHHHHHHHhhCCCeeEEEEecCccccccccceEEE
Confidence 2357999999 99988 899999999997 4667777433 3899999
Q ss_pred EeCCHHHHHHHHHHhcC--cccCCeEEEEEEcChhh
Q 006380 607 RFESTEAAASAQRAMHM--RWFARRLISAIFMKPED 640 (647)
Q Consensus 607 ~F~~~~~A~~A~~~l~g--~~~~Gr~l~v~~~~~~~ 640 (647)
+|.+...|..|...|-. ..+-|+.|.|.|+.|++
T Consensus 214 eYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~ 249 (506)
T KOG0117|consen 214 EYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEE 249 (506)
T ss_pred EeecchhHHHHHhhccCCceeecCCcceeeccCccc
Confidence 99999999999887743 44779999999998865
No 40
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=8.9e-20 Score=167.06 Aligned_cols=250 Identities=27% Similarity=0.393 Sum_probs=156.9
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCC--eEEEEEe
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG--RTLKVSS 454 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g--~~l~v~~ 454 (647)
.++|||+-|...-.|+|++.+|..||.|.+|.+.+.. .|.++|+|||.|.+..+|..||..|||.-.+-| ..|.|.|
T Consensus 19 drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 19 DRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred chhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 4899999999999999999999999999999999987 899999999999999999999999999744555 5789999
Q ss_pred ecCCCCCCCc-----cccCCCCCCCCCCCcccc---hhhHHHHHHhhhhcCCc--ccc------------------CCcC
Q 006380 455 VTDHVGTQDT-----AAKSADFDDDDGGGLALN---AQSRALLMQKLDRTGIA--TSI------------------AGSL 506 (647)
Q Consensus 455 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~------------------~~~~ 506 (647)
+......... ....+-+.. ..+.+. +.....+++........ ..+ .+.+
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~P---l~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl 174 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNP---LALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGL 174 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCc---cccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccc
Confidence 9876543211 111111111 112221 11111222111111000 000 0000
Q ss_pred CCCCCCCCccccc---------cccccC------------ccCCCCCC-------------CCCC---------------
Q 006380 507 GVAPAVNGSAVNQ---------QAISLP------------VVGQPAVP-------------VPAV--------------- 537 (647)
Q Consensus 507 ~~~~~~~~~~~~~---------~~~~~~------------~~~~~~~~-------------~~~~--------------- 537 (647)
...+......... ..+..+ ..|.++.. .+.+
T Consensus 175 ~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~ 254 (371)
T KOG0146|consen 175 AAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYA 254 (371)
T ss_pred ccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHh
Confidence 0011000000000 000000 00111000 0000
Q ss_pred ------------CCCCccccc--ccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEe-----c
Q 006380 538 ------------TAPVIPNMA--AEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVD-----K 598 (647)
Q Consensus 538 ------------~~~~~~~~~--~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~-----~ 598 (647)
..|..|... ....++..+.|||.+| |.+..| .+|.++|-+||.|++.++. .
T Consensus 255 Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHL--PQEFgD--------aEliQmF~PFGhivSaKVFvDRATN 324 (371)
T KOG0146|consen 255 AAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHL--PQEFGD--------AELIQMFLPFGHIVSAKVFVDRATN 324 (371)
T ss_pred hhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeC--chhhcc--------HHHHHHhccccceeeeeeeehhccc
Confidence 000000000 0115567788999999 998884 7799999999999987763 2
Q ss_pred CCCceEEEEeCCHHHHHHHHHHhcCcccCCeEEEEEEcChhh
Q 006380 599 RSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPED 640 (647)
Q Consensus 599 ~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l~v~~~~~~~ 640 (647)
.++.|+||.|.|+.+|..||..|||+.|+-+.|+|++-.|.+
T Consensus 325 QSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkd 366 (371)
T KOG0146|consen 325 QSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 366 (371)
T ss_pred cccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCccc
Confidence 378999999999999999999999999999999999987765
No 41
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.80 E-value=8.1e-18 Score=163.43 Aligned_cols=321 Identities=18% Similarity=0.215 Sum_probs=204.3
Q ss_pred ceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCcccccccccc------Cceeeeeeeee
Q 006380 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLIN------SCCVIKFFLVA 294 (647)
Q Consensus 221 ~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 294 (647)
-.++|+|+-+.+|.+-|-++|+.||.|..|....... ...|+|+|.....|..++..|+ |||.+++.++.
T Consensus 151 Lr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn----~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sk 226 (492)
T KOG1190|consen 151 LRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNN----GFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSK 226 (492)
T ss_pred EEEEeccceeeeEHHHHHHHHhhcceeEEEEEEeccc----chhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhh
Confidence 4678999999999999999999999999887776432 3457899988888776666554 69999999996
Q ss_pred cccc-eEeecCCccccccCCcccccceeeEEecCCcCH-HHHH--HhcC-ccccCccccCCCChhhhhhhcccccCCCCC
Q 006380 295 EVGM-VFFLLGDETYTVLDPATVLVSYRYIEFYDVMSV-PMAI--ALSG-QLLLGQPVMVKPSEAEKNLVQSNTSAGGTA 369 (647)
Q Consensus 295 ~~~~-~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a-~~al--~l~g-~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~ 369 (647)
-+.. +.+.|....-...- ++.+.+.+.. ...| +..+ -...|-+..+-..... ..... +..
T Consensus 227 lt~LnvKynndkSRDyTnp---------~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~-----a~~a~-~~~ 291 (492)
T KOG1190|consen 227 LTDLNVKYNNDKSRDYTNP---------DLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAG-----ANAAD-GKI 291 (492)
T ss_pred cccceeeccccccccccCC---------CCCCCccccccchhhhccccccccccCCcccCCccchh-----hcccc-ccc
Confidence 4433 33333332211100 0111111110 0000 0000 0111211111111000 00000 000
Q ss_pred CCCCCCCCceEEEcCC-CCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCe
Q 006380 370 TGPYGAIDRKLYVGNL-HFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGR 448 (647)
Q Consensus 370 ~~~~~~~~~~l~v~nL-p~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~ 448 (647)
..+. .+..|.|.|| +..+|.+.|..+|+.||.|..|.|+.++ +-.|+|+|.+...|+.|++.|+|. .++|+
T Consensus 292 ~~~~--~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~-~l~gk 363 (492)
T KOG1190|consen 292 ESPS--ANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGH-KLYGK 363 (492)
T ss_pred ccCC--CceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcc-eecCc
Confidence 0001 1478888888 5667999999999999999999999886 468999999999999999999995 89999
Q ss_pred EEEEEeecCCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccC
Q 006380 449 TLKVSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVG 528 (647)
Q Consensus 449 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (647)
+|+|.+++-.. .+... +.....++..+..
T Consensus 364 ~lrvt~SKH~~-vqlp~------egq~d~glT~dy~-------------------------------------------- 392 (492)
T KOG1190|consen 364 KLRVTLSKHTN-VQLPR------EGQEDQGLTKDYG-------------------------------------------- 392 (492)
T ss_pred eEEEeeccCcc-ccCCC------CCCccccccccCC--------------------------------------------
Confidence 99999987311 11000 0000000000000
Q ss_pred CCCCCCCCCCCCCc--ccccccc-cCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeE-EEEEecCCCceE
Q 006380 529 QPAVPVPAVTAPVI--PNMAAEF-IGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVK-HIYVDKRSAGFV 604 (647)
Q Consensus 529 ~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~-~v~l~~~~~g~a 604 (647)
...++.+ |...+.. ..+|+.+|++.|+ |...+ +++|+++|..-|.+. -.+.....+.+|
T Consensus 393 -------~spLhrfkkpgsKN~~ni~PpsatlHlsni--p~svs--------ee~lk~~f~~~g~~vkafkff~kd~kma 455 (492)
T KOG1190|consen 393 -------NSPLHRFKKPGSKNYQNIFPPSATLHLSNI--PPSVS--------EEDLKNLFQEPGGQVKAFKFFQKDRKMA 455 (492)
T ss_pred -------CCchhhccCcccccccccCCchhheeeccC--Ccccc--------hhHHHHhhhcCCceEEeeeecCCCccee
Confidence 0000000 0000111 2477889999999 88887 899999999888664 455555567799
Q ss_pred EEEeCCHHHHHHHHHHhcCcccCCe-EEEEEEc
Q 006380 605 YLRFESTEAAASAQRAMHMRWFARR-LISAIFM 636 (647)
Q Consensus 605 fV~F~~~~~A~~A~~~l~g~~~~Gr-~l~v~~~ 636 (647)
++++.++++|..|+..|++..+++. .|+|+|.
T Consensus 456 l~q~~sveeA~~ali~~hnh~lgen~hlRvSFS 488 (492)
T KOG1190|consen 456 LPQLESVEEAIQALIDLHNHYLGENHHLRVSFS 488 (492)
T ss_pred ecccCChhHhhhhccccccccCCCCceEEEEee
Confidence 9999999999999999999999855 9999985
No 42
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=5.7e-19 Score=168.49 Aligned_cols=167 Identities=20% Similarity=0.451 Sum_probs=138.6
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecC
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 457 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~ 457 (647)
++|||+.|.+.+.|+.|+..|.+||+|.+|.+..|+.|++.+|||||+|.-++.|+.|++.|||. +++|+.|+|.....
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~-mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQ-MLGGRNIKVGRPSN 192 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccc-cccCccccccCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999996 69999999975431
Q ss_pred CCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCCCCCCCC
Q 006380 458 HVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPAV 537 (647)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (647)
....+ ..--.++..
T Consensus 193 mpQAQ---------------------piID~vqee--------------------------------------------- 206 (544)
T KOG0124|consen 193 MPQAQ---------------------PIIDMVQEE--------------------------------------------- 206 (544)
T ss_pred Ccccc---------------------hHHHHHHHH---------------------------------------------
Confidence 10000 000000000
Q ss_pred CCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCHH
Q 006380 538 TAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTE 612 (647)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~~ 612 (647)
-..-..|||..+ -..+. ++||+.+|+-||.|.+|.|.+. .+||+||+|.+..
T Consensus 207 -------------Ak~fnRiYVaSv--HpDLS--------e~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~q 263 (544)
T KOG0124|consen 207 -------------AKKFNRIYVASV--HPDLS--------ETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQ 263 (544)
T ss_pred -------------HHhhheEEeeec--CCCcc--------HHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEecccc
Confidence 012246999998 44444 6999999999999999999654 4899999999999
Q ss_pred HHHHHHHHhcCcccCCeEEEEE
Q 006380 613 AAASAQRAMHMRWFARRLISAI 634 (647)
Q Consensus 613 ~A~~A~~~l~g~~~~Gr~l~v~ 634 (647)
.-..|+..||-+.++|.-|+|.
T Consensus 264 s~~eAiasMNlFDLGGQyLRVG 285 (544)
T KOG0124|consen 264 SQSEAIASMNLFDLGGQYLRVG 285 (544)
T ss_pred chHHHhhhcchhhcccceEecc
Confidence 9999999999999999999985
No 43
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.79 E-value=2.9e-19 Score=166.08 Aligned_cols=146 Identities=25% Similarity=0.421 Sum_probs=131.0
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecC
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 457 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~ 457 (647)
-.|||+|||..+++.+|+.+|++||.|.+|.|+++ |+||...+...|..|+..||| +.|+|..|.|.-++.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhg-YtLhg~nInVeaSks 73 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHG-YTLHGVNINVEASKS 73 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhccc-ceecceEEEEEeccc
Confidence 57999999999999999999999999999999876 999999999999999999999 599999999988762
Q ss_pred CCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCCCCCCCC
Q 006380 458 HVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPAV 537 (647)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (647)
+
T Consensus 74 K------------------------------------------------------------------------------- 74 (346)
T KOG0109|consen 74 K------------------------------------------------------------------------------- 74 (346)
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred CCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHH
Q 006380 538 TAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASA 617 (647)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A 617 (647)
...+.+|+|.|| ....+ -++|+..|++||.|+.|.|. ++++||+|.-.++|..|
T Consensus 75 -------------sk~stkl~vgNi--s~tct--------n~ElRa~fe~ygpviecdiv---kdy~fvh~d~~eda~~a 128 (346)
T KOG0109|consen 75 -------------SKASTKLHVGNI--SPTCT--------NQELRAKFEKYGPVIECDIV---KDYAFVHFDRAEDAVEA 128 (346)
T ss_pred -------------CCCccccccCCC--Ccccc--------CHHHhhhhcccCCceeeeee---cceeEEEEeeccchHHH
Confidence 123457999999 33333 37899999999999999999 67999999999999999
Q ss_pred HHHhcCcccCCeEEEEEEcC
Q 006380 618 QRAMHMRWFARRLISAIFMK 637 (647)
Q Consensus 618 ~~~l~g~~~~Gr~l~v~~~~ 637 (647)
+..|+|+.|.|+.|+|++.+
T Consensus 129 ir~l~~~~~~gk~m~vq~st 148 (346)
T KOG0109|consen 129 IRGLDNTEFQGKRMHVQLST 148 (346)
T ss_pred Hhcccccccccceeeeeeec
Confidence 99999999999999999865
No 44
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.78 E-value=7.7e-18 Score=152.94 Aligned_cols=206 Identities=22% Similarity=0.332 Sum_probs=147.6
Q ss_pred ceEEEcCCCCCCCHHHHHH----hhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEE
Q 006380 378 RKLYVGNLHFNMTETQLRK----LFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 453 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~----~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~ 453 (647)
.+|||.||+..+..++|+. +|++||.|..|...+ +.+.+|.|||.|.+.+.|..|+.+|+| +.+.|+.+.|.
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~g-fpFygK~mriq 85 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQG-FPFYGKPMRIQ 85 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcC-CcccCchhhee
Confidence 5999999999999999987 999999999988765 678899999999999999999999999 68999999999
Q ss_pred eecCCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCCCC
Q 006380 454 SVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVP 533 (647)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (647)
||..+...-..........+.......+.... .. ...++......
T Consensus 86 yA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~---------~~-------------~~~ng~~~~~~------------- 130 (221)
T KOG4206|consen 86 YAKSDSDIIAQAPGTFVEKEKKINGEILARIK---------QP-------------LDTNGHFYNMN------------- 130 (221)
T ss_pred cccCccchhhccCceeccccCccccccccccC---------Cc-------------ccccccccccc-------------
Confidence 99876543222111000000000000000000 00 00000000000
Q ss_pred CCCCCCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHH
Q 006380 534 VPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEA 613 (647)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~ 613 (647)
..++. ++. . ....+|+.+|++.|| |.+++ .+.|..+|++|+....|.+...-.+.|||+|.+...
T Consensus 131 ~~~~p-~p~---~-~~~~ppn~ilf~~ni--P~es~--------~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~ 195 (221)
T KOG4206|consen 131 RMNLP-PPF---L-AQMAPPNNILFLTNI--PSESE--------SEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQ 195 (221)
T ss_pred cccCC-CCc---c-ccCCCCceEEEEecC--Ccchh--------HHHHHHHHhhCcccceeEeccCCCceeEEecchhhh
Confidence 00000 011 1 112477889999999 99887 788999999999999998887778999999999999
Q ss_pred HHHHHHHhcCcccC-CeEEEEEEcC
Q 006380 614 AASAQRAMHMRWFA-RRLISAIFMK 637 (647)
Q Consensus 614 A~~A~~~l~g~~~~-Gr~l~v~~~~ 637 (647)
|..|...|+|..+. ..+|.|.|+.
T Consensus 196 a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 196 ASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred hHHHhhhhccceeccCceEEecccC
Confidence 99999999999998 9999998864
No 45
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.76 E-value=1.5e-18 Score=161.38 Aligned_cols=147 Identities=30% Similarity=0.487 Sum_probs=132.0
Q ss_pred ceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecccceE
Q 006380 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVGMVF 300 (647)
Q Consensus 221 ~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (647)
-.|||||||..+++.+|+.+|++||.|+++.|+++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------------------------------------------- 37 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------------------------------------------- 37 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc---------------------------------------------
Confidence 36899999999999999999999999999999864
Q ss_pred eecCCccccccCCcccccceeeEEecCCcCHHHHH-HhcCccccCccccCCCChhhhhhhcccccCCCCCCCCCCCCCce
Q 006380 301 FLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRK 379 (647)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al-~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (647)
||||...+...|.-|+ .|+|-.|.|..|.|.-+..+. ..+.+
T Consensus 38 -------------------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs------------------k~stk 80 (346)
T KOG0109|consen 38 -------------------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS------------------KASTK 80 (346)
T ss_pred -------------------cceEEeecccccHHHHhhcccceecceEEEEEeccccC------------------CCccc
Confidence 4499999999999999 599999999999997765431 12379
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecCC
Q 006380 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDH 458 (647)
Q Consensus 380 l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~~ 458 (647)
|+|+||.+.++..+|+..|++||+|..+.|+++ |+||.|.-.++|..|+..|+|+ .|.|+.++|+.++..
T Consensus 81 l~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~-~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 81 LHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNT-EFQGKRMHVQLSTSR 150 (346)
T ss_pred cccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhccccc-ccccceeeeeeeccc
Confidence 999999999999999999999999999999755 9999999999999999999998 799999999988764
No 46
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.76 E-value=1.6e-18 Score=180.04 Aligned_cols=175 Identities=31% Similarity=0.478 Sum_probs=146.9
Q ss_pred EEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCC---CCccceeeeeeeccCccccccccccCceeeeeeeeecccce
Q 006380 223 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNS---RRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVGMV 299 (647)
Q Consensus 223 v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t---~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (647)
|||.||++.+|..+|...|...|.|.++.|...+.. -.|.|||
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfg---------------------------------- 563 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFG---------------------------------- 563 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEecccccccccccccee----------------------------------
Confidence 999999999999999999999999999988775432 2355777
Q ss_pred EeecCCccccccCCcccccceeeEEecCCcCHHHHH-HhcCccccCccccCCCChhhhhhhcccccCCCCCCCCCCCCCc
Q 006380 300 FFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDR 378 (647)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al-~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (647)
||+|.++++|..|+ .|+|..|.|+.|.|..+..... .. .....+......
T Consensus 564 ----------------------FVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~----~~---~gK~~~~kk~~t 614 (725)
T KOG0110|consen 564 ----------------------FVEFAKPESAQAALKALQGTVLDGHKLELKISENKPA----ST---VGKKKSKKKKGT 614 (725)
T ss_pred ----------------------EEEecCHHHHHHHHHHhcCceecCceEEEEeccCccc----cc---cccccccccccc
Confidence 99999999999999 5899999999999988761110 00 011122222357
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecCC
Q 006380 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDH 458 (647)
Q Consensus 379 ~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~~ 458 (647)
.|+|.|||+.++..+|+.+|..||.|.+|.|+.-...+.++|||||+|.++.+|..|+.+|.++ -++|+.|.+.|+...
T Consensus 615 KIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~ST-HlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 615 KILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGST-HLYGRRLVLEWAKSD 693 (725)
T ss_pred eeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhccc-ceechhhheehhccc
Confidence 9999999999999999999999999999999988667888999999999999999999999986 699999999999865
Q ss_pred CCC
Q 006380 459 VGT 461 (647)
Q Consensus 459 ~~~ 461 (647)
..+
T Consensus 694 ~~~ 696 (725)
T KOG0110|consen 694 NTM 696 (725)
T ss_pred hHH
Confidence 543
No 47
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.73 E-value=1.2e-17 Score=164.25 Aligned_cols=179 Identities=25% Similarity=0.395 Sum_probs=157.3
Q ss_pred CCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecccc
Q 006380 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVGM 298 (647)
Q Consensus 219 ~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (647)
+...||||+|++.+|++.|.+.|.+||.|.++.++.|+.+++++||+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFg--------------------------------- 51 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFG--------------------------------- 51 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCccccc---------------------------------
Confidence 67899999999999999999999999999999999999999999999
Q ss_pred eEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCChhhhhhhcccccCCCCCCCCCCCCCc
Q 006380 299 VFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDR 378 (647)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (647)
||+|.+++....+|...-+.|.|+.|.+..+.+.......... ....
T Consensus 52 -----------------------fv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r~~~~~~~~~----------~~tk 98 (311)
T KOG4205|consen 52 -----------------------FVTFATPEGVDAVLNARTHKLDGRSVEPKRAVSREDQTKVGRH----------LRTK 98 (311)
T ss_pred -----------------------ceecCCCcchheeecccccccCCccccceeccCcccccccccc----------ccee
Confidence 9999999999999988889999999998877655433322211 1347
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecCC
Q 006380 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDH 458 (647)
Q Consensus 379 ~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~~ 458 (647)
.|||++||..++++++++.|.+||.|..+.++.|..+...+||+||.|.+.+.+.+++ ...- ..|.|++|.|..|.++
T Consensus 99 kiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f-~~~~gk~vevkrA~pk 176 (311)
T KOG4205|consen 99 KIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKF-HDFNGKKVEVKRAIPK 176 (311)
T ss_pred EEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec-ccce-eeecCceeeEeeccch
Confidence 9999999999999999999999999999999999999999999999999999999998 4444 3699999999999988
Q ss_pred CCCCCcc
Q 006380 459 VGTQDTA 465 (647)
Q Consensus 459 ~~~~~~~ 465 (647)
..+....
T Consensus 177 ~~~~~~~ 183 (311)
T KOG4205|consen 177 EVMQSTK 183 (311)
T ss_pred hhccccc
Confidence 7665443
No 48
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.70 E-value=8.9e-16 Score=153.63 Aligned_cols=172 Identities=24% Similarity=0.324 Sum_probs=131.3
Q ss_pred CCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecccc
Q 006380 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVGM 298 (647)
Q Consensus 219 ~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (647)
..-.|-+.+||+++|+++|.++|+.|+ |.++.+ .+.+|+..|=|
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~--~r~~Gr~sGeA--------------------------------- 52 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEI--PRRNGRPSGEA--------------------------------- 52 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEE--eccCCCcCcce---------------------------------
Confidence 456788999999999999999999995 556444 44568888888
Q ss_pred eEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCChhhhhhhcccccCCCCCCCCCCCCCc
Q 006380 299 VFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDR 378 (647)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (647)
||+|.+.+++.+||+++...+..+-|.|-.+................ .....
T Consensus 53 -----------------------~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d~~~~~~g~~s-----~~~d~ 104 (510)
T KOG4211|consen 53 -----------------------YVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAEADWVMRPGGPNS-----SANDG 104 (510)
T ss_pred -----------------------EEEeechHHHHHHHHhhHHHhCCceEEEEccCCccccccccCCCCCC-----CCCCc
Confidence 99999999999999999988888888886553322211111110000 02336
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCCeeE-EEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecC
Q 006380 379 KLYVGNLHFNMTETQLRKLFEPFGPVEL-VQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 457 (647)
Q Consensus 379 ~l~v~nLp~~~~e~~l~~~f~~~g~i~~-v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~ 457 (647)
.|.|++||+.++++||.++|+..-.|.. |.++.+. .+.+.|-|||+|.+.+.|++||..... .|.-+-|.|-.+.-
T Consensus 105 vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rhre--~iGhRYIEvF~Ss~ 181 (510)
T KOG4211|consen 105 VVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGRHRE--NIGHRYIEVFRSSR 181 (510)
T ss_pred eEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHHHHH--hhccceEEeehhHH
Confidence 8999999999999999999998876665 5566665 677999999999999999999955443 57888888877654
No 49
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.65 E-value=5.1e-15 Score=142.77 Aligned_cols=301 Identities=20% Similarity=0.259 Sum_probs=202.9
Q ss_pred CCCCCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeee
Q 006380 215 DPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVA 294 (647)
Q Consensus 215 ~~~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (647)
.....+--|..++||+..+..+|..+|...........+.....|+-+|++
T Consensus 55 ~~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~----------------------------- 105 (508)
T KOG1365|consen 55 HSADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEA----------------------------- 105 (508)
T ss_pred cccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccce-----------------------------
Confidence 334455667789999999999999999876554444444444446667777
Q ss_pred cccceEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCChhhhhhhcccccCCCCCCCCCC
Q 006380 295 EVGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYG 374 (647)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (647)
.|.|.+.+.-.+|++-+.+.+.++.+.|-.+..................-...
T Consensus 106 ---------------------------lvrf~d~e~RdlalkRhkhh~g~ryievYka~ge~f~~iagg~s~e~~~flsk 158 (508)
T KOG1365|consen 106 ---------------------------LVRFVDPEGRDLALKRHKHHMGTRYIEVYKATGEEFLKIAGGTSNEAAPFLSK 158 (508)
T ss_pred ---------------------------EEEecCchhhhhhhHhhhhhccCCceeeeccCchhheEecCCccccCCCCCCc
Confidence 99999999999999999999999988886555444433322222222222222
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccC----CCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEE
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPF----GPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTL 450 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~----g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l 450 (647)
...-.|.+++||+++++.+|.++|..- |....|.++..+ +|+.+|-|||.|...++|+.||..-.+ .|+.+-|
T Consensus 159 ~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khrq--~iGqRYI 235 (508)
T KOG1365|consen 159 ENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHRQ--NIGQRYI 235 (508)
T ss_pred ccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHHH--HHhHHHH
Confidence 223577889999999999999999743 234456665554 789999999999999999999955444 3666666
Q ss_pred EEEeecCCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCC
Q 006380 451 KVSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQP 530 (647)
Q Consensus 451 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (647)
.+-.++ ....++.+++.... ++.+.++. +
T Consensus 236 ElFRST-----------------------------aaEvqqvlnr~~s~-pLi~~~~s----------------p----- 264 (508)
T KOG1365|consen 236 ELFRST-----------------------------AAEVQQVLNREVSE-PLIPGLTS----------------P----- 264 (508)
T ss_pred HHHHHh-----------------------------HHHHHHHHHhhccc-cccCCCCC----------------C-----
Confidence 554433 12333333333211 11110000 0
Q ss_pred CCCCCCCCCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCC-eEE--EEEe----cCCCce
Q 006380 531 AVPVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGR-VKH--IYVD----KRSAGF 603 (647)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~-v~~--v~l~----~~~~g~ 603 (647)
. .++......|. ..+..||.|++| |.+.+ .+||..+|..|.. |.. |++. ..+.|.
T Consensus 265 ~--~p~~p~~~~p~------~~~kdcvRLRGL--Py~At--------vEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGe 326 (508)
T KOG1365|consen 265 L--LPGGPARLVPP------TRSKDCVRLRGL--PYEAT--------VEDILDFLGDFATDIRFQGVHMVLNGQGRPSGE 326 (508)
T ss_pred C--CCCCccccCCC------CCCCCeeEecCC--Chhhh--------HHHHHHHHHHHhhhcccceeEEEEcCCCCcChh
Confidence 0 00000000000 133679999999 98877 7999999998864 322 4443 335789
Q ss_pred EEEEeCCHHHHHHHHHHhcCcccCCeEEEEEEcChhhhhh
Q 006380 604 VYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEA 643 (647)
Q Consensus 604 afV~F~~~~~A~~A~~~l~g~~~~Gr~l~v~~~~~~~~~~ 643 (647)
|||+|.+.+.|..|+..-+....+++-|.|--++-+++++
T Consensus 327 AFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eeln~ 366 (508)
T KOG1365|consen 327 AFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEELNE 366 (508)
T ss_pred hhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHHHH
Confidence 9999999999999999999999999999998888888764
No 50
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=3e-15 Score=137.58 Aligned_cols=83 Identities=31% Similarity=0.459 Sum_probs=76.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEe
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 454 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~ 454 (647)
+..+.|||..||....+.+|...|-.||.|.+.++..|..|+.++.|+||.|.++.+|+.||.+||| |.|+=+.|+|..
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNG-FQIGMKRLKVQL 361 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNG-FQIGMKRLKVQL 361 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcc-hhhhhhhhhhhh
Confidence 4479999999999999999999999999999999999999999999999999999999999999999 789888888877
Q ss_pred ecCC
Q 006380 455 VTDH 458 (647)
Q Consensus 455 ~~~~ 458 (647)
-.++
T Consensus 362 KRPk 365 (371)
T KOG0146|consen 362 KRPK 365 (371)
T ss_pred cCcc
Confidence 5543
No 51
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.60 E-value=2.5e-14 Score=130.26 Aligned_cols=174 Identities=21% Similarity=0.395 Sum_probs=140.9
Q ss_pred CCCceEEeccCCccCCHHHHHH----HHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeee
Q 006380 218 RDQRTVFAYQMPLKATERDVYE----FFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLV 293 (647)
Q Consensus 218 ~~~~~v~i~nlp~~~te~~l~~----~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (647)
.++.||||.||+..+..++|+. +|++||.|..|.++. |.+.+|.|
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA---------------------------- 55 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQA---------------------------- 55 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCce----------------------------
Confidence 3456999999999999999877 999999999999875 45678998
Q ss_pred ecccceEeecCCccccccCCcccccceeeEEecCCcCHHHHH-HhcCccccCccccCCCChhhhhhhcccc---------
Q 006380 294 AEVGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNT--------- 363 (647)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al-~l~g~~~~g~~l~v~~~~~~~~~~~~~~--------- 363 (647)
||.|.+.+.|..|+ +|+|..+.|.+++|+++...........
T Consensus 56 ----------------------------~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~~~~~~v~~~~k 107 (221)
T KOG4206|consen 56 ----------------------------FVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQAPGTFVEKEKK 107 (221)
T ss_pred ----------------------------EEEecChhHHHHHHHHhcCCcccCchhheecccCccchhhccCceeccccCc
Confidence 99999999999999 6999999999999988654322211100
Q ss_pred ----------cCC---C--------CCC----CCCCCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCe
Q 006380 364 ----------SAG---G--------TAT----GPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQC 418 (647)
Q Consensus 364 ----------~~~---~--------~~~----~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~ 418 (647)
... + ..+ ....+++..|++.|||..++.+.+..+|.+|.....|+++...
T Consensus 108 ~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~----- 182 (221)
T KOG4206|consen 108 INGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR----- 182 (221)
T ss_pred cccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----
Confidence 000 0 000 2235668899999999999999999999999999999997764
Q ss_pred eeEEEEEeCCHHHHHHHHHHHcCCeeeC-CeEEEEEeec
Q 006380 419 KGFGFVQFAQLEHAKAAQSALNGKLEIV-GRTLKVSSVT 456 (647)
Q Consensus 419 ~g~afV~f~~~~~A~~Al~~l~g~~~~~-g~~l~v~~~~ 456 (647)
.++|||+|.+...|..|...|.+ +.|- ..+|.|.++.
T Consensus 183 ~~iAfve~~~d~~a~~a~~~lq~-~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 183 SGIAFVEFLSDRQASAAQQALQG-FKITKKNTMQITFAK 220 (221)
T ss_pred CceeEEecchhhhhHHHhhhhcc-ceeccCceEEecccC
Confidence 78999999999999999999998 4665 7888888764
No 52
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.58 E-value=1.8e-14 Score=128.12 Aligned_cols=82 Identities=38% Similarity=0.692 Sum_probs=77.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEee
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 455 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~ 455 (647)
..++|||+|||+.+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|+.||+.|++. .|.|+.|+|.++
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~-~i~Gr~l~V~~a 111 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGK-ELNGRHIRVNPA 111 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCC-EECCEEEEEEeC
Confidence 3589999999999999999999999999999999999999999999999999999999999999996 799999999998
Q ss_pred cCC
Q 006380 456 TDH 458 (647)
Q Consensus 456 ~~~ 458 (647)
.+.
T Consensus 112 ~~~ 114 (144)
T PLN03134 112 NDR 114 (144)
T ss_pred CcC
Confidence 754
No 53
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=4.3e-15 Score=153.29 Aligned_cols=182 Identities=25% Similarity=0.338 Sum_probs=143.5
Q ss_pred CCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecccc
Q 006380 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVGM 298 (647)
Q Consensus 219 ~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (647)
....++|++||...++.++.+++..||.+....++.+..+|.++||+
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~a--------------------------------- 334 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFA--------------------------------- 334 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeeccccccccccee---------------------------------
Confidence 34688999999999999999999999999999999999999999998
Q ss_pred eEeecCCccccccCCcccccceeeEEecCCcCHHHHHH-hcCccccCccccCCCChhhhhhhccccc--------CCCCC
Q 006380 299 VFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTS--------AGGTA 369 (647)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~-l~g~~~~g~~l~v~~~~~~~~~~~~~~~--------~~~~~ 369 (647)
|.+|.++.-+..|++ |||+.+.+..|.|+.+.........+.. .....
T Consensus 335 -----------------------f~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~ 391 (500)
T KOG0120|consen 335 -----------------------FCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLM 391 (500)
T ss_pred -----------------------eeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhh
Confidence 999999999999995 9999999999988765443322222111 11111
Q ss_pred CCCCCCCCceEEEcCCC--CCC-CH-------HHHHHhhccCCCeeEEEeccCC---CCCCeeeEEEEEeCCHHHHHHHH
Q 006380 370 TGPYGAIDRKLYVGNLH--FNM-TE-------TQLRKLFEPFGPVELVQLPLDI---ETGQCKGFGFVQFAQLEHAKAAQ 436 (647)
Q Consensus 370 ~~~~~~~~~~l~v~nLp--~~~-~e-------~~l~~~f~~~g~i~~v~i~~~~---~~~~~~g~afV~f~~~~~A~~Al 436 (647)
....+.++..|++.|+= ..+ ++ ++|+..|.+||.|..|.|+++. ......|-.||+|.+.++++.|+
T Consensus 392 ~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~ 471 (500)
T KOG0120|consen 392 TQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAM 471 (500)
T ss_pred cccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHH
Confidence 24455667888888872 111 11 5666788899999999998872 22335778999999999999999
Q ss_pred HHHcCCeeeCCeEEEEEeecC
Q 006380 437 SALNGKLEIVGRTLKVSSVTD 457 (647)
Q Consensus 437 ~~l~g~~~~~g~~l~v~~~~~ 457 (647)
++|+|. .|.|++|...|...
T Consensus 472 ~~L~Gr-KF~nRtVvtsYyde 491 (500)
T KOG0120|consen 472 EELTGR-KFANRTVVASYYDE 491 (500)
T ss_pred HHccCc-eeCCcEEEEEecCH
Confidence 999997 79999999999763
No 54
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.57 E-value=7.6e-14 Score=125.25 Aligned_cols=232 Identities=19% Similarity=0.249 Sum_probs=130.3
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEec-cCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeC---CeEEEEE
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLP-LDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIV---GRTLKVS 453 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~-~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~---g~~l~v~ 453 (647)
++|||.+||.++...+|+.+|..|---+...|- .++.....+-+|||.|.+..+|..|+.+||| +.|+ +.+|+|.
T Consensus 35 RTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNG-vrFDpE~~stLhiE 113 (284)
T KOG1457|consen 35 RTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNG-VRFDPETGSTLHIE 113 (284)
T ss_pred ceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcC-eeeccccCceeEee
Confidence 899999999999999999999988655555442 3333344567999999999999999999999 6775 5789999
Q ss_pred eecCCCCCCCccccCCCCCCCCCCCcccchhhHHHHHH--hhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCC
Q 006380 454 SVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQ--KLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPA 531 (647)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (647)
+++.......... ....+....+........+. ...........+..+........+..+..-.+.. ...+.
T Consensus 114 lAKSNtK~kr~k~-----sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~-l~a~~ 187 (284)
T KOG1457|consen 114 LAKSNTKRKRRKG-----SGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEA-LSAPD 187 (284)
T ss_pred ehhcCcccccCCC-----CCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhh-hhhhh
Confidence 9986543321110 00111111111111111111 1111110000000000000000000000000000 00000
Q ss_pred CCCCCCCCCCccccccc-ccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEe-cCCCceEEEEeC
Q 006380 532 VPVPAVTAPVIPNMAAE-FIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVD-KRSAGFVYLRFE 609 (647)
Q Consensus 532 ~~~~~~~~~~~~~~~~~-~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~-~~~~g~afV~F~ 609 (647)
...|..+. .+-....- .......+|||-|| ..+.+ ++.|+.+|+.|.....++|. +.+...|||+|+
T Consensus 188 ~~~P~a~a-~l~ks~q~~~~~~acstlfianl--~~~~~--------ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~ 256 (284)
T KOG1457|consen 188 SKAPSANA-HLEKSSQGGSGARACSTLFIANL--GPNCT--------EDELKQLLSRYPGFHILKIRARGGMPVAFADFE 256 (284)
T ss_pred hcCCcccc-hhhhhhcccccchhhhhHhhhcc--CCCCC--------HHHHHHHHHhCCCceEEEEecCCCcceEeecHH
Confidence 00000000 00000000 01122346999999 55555 79999999999888888874 456778999999
Q ss_pred CHHHHHHHHHHhcCcccC
Q 006380 610 STEAAASAQRAMHMRWFA 627 (647)
Q Consensus 610 ~~~~A~~A~~~l~g~~~~ 627 (647)
+++.|..|+..|+|..|.
T Consensus 257 ~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 257 EIEQATDAMNHLQGNLLS 274 (284)
T ss_pred HHHHHHHHHHHhhcceec
Confidence 999999999999998874
No 55
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=1.9e-13 Score=119.11 Aligned_cols=181 Identities=19% Similarity=0.263 Sum_probs=131.2
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
.+.|||+|||..+-+.+|.++|-+||.|..|.|...+ ....||||+|.++-+|..||..-+| +.++|+.|.|.++-
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdG-Ydydg~rLRVEfpr 81 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDG-YDYDGCRLRVEFPR 81 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccc-cccCcceEEEEecc
Confidence 4899999999999999999999999999999884432 2356999999999999999988899 58999999999976
Q ss_pred CCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCCCCCCC
Q 006380 457 DHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPA 536 (647)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (647)
.......... .. +..+..+.... +
T Consensus 82 ggr~s~~~~G---~y-----------------------------~gggrgGgg~g------------------------g 105 (241)
T KOG0105|consen 82 GGRSSSDRRG---SY-----------------------------SGGGRGGGGGG------------------------G 105 (241)
T ss_pred CCCccccccc---cc-----------------------------CCCCCCCCCCC------------------------c
Confidence 3221100000 00 00000000000 0
Q ss_pred CCCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHH
Q 006380 537 VTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAAS 616 (647)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~ 616 (647)
... .| .....-.|+|.+| |.... |+||++....-|.|....+.+++ .+.|+|...++..-
T Consensus 106 ~rg--pp------srrSe~RVvVsGL--p~SgS--------WQDLKDHmReaGdvCfadv~rDg--~GvV~~~r~eDMkY 165 (241)
T KOG0105|consen 106 RRG--PP------SRRSEYRVVVSGL--PPSGS--------WQDLKDHMREAGDVCFADVQRDG--VGVVEYLRKEDMKY 165 (241)
T ss_pred ccC--Cc------ccccceeEEEecC--CCCCc--------hHHHHHHHHhhCCeeeeeeeccc--ceeeeeeehhhHHH
Confidence 000 00 1223346999999 88766 89999999999999999998765 78999999999999
Q ss_pred HHHHhcCcccC--CeEEEEEEcC
Q 006380 617 AQRAMHMRWFA--RRLISAIFMK 637 (647)
Q Consensus 617 A~~~l~g~~~~--Gr~l~v~~~~ 637 (647)
|+..|....|. |-+..+....
T Consensus 166 Avr~ld~~~~~seGe~~yirv~~ 188 (241)
T KOG0105|consen 166 AVRKLDDQKFRSEGETAYIRVRG 188 (241)
T ss_pred HHHhhccccccCcCcEeeEEecc
Confidence 99999987774 6555555433
No 56
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.53 E-value=2.6e-12 Score=123.86 Aligned_cols=342 Identities=18% Similarity=0.168 Sum_probs=210.8
Q ss_pred CCCCceEE--eccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCcccccccccc------Cceee
Q 006380 217 ERDQRTVF--AYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLIN------SCCVI 288 (647)
Q Consensus 217 ~~~~~~v~--i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~------~~~~~ 288 (647)
...+..|. |-|--+.||.+.|..++.+.|.|..|.|+... --.|.|.|-+.+.|.-++..|+ |||++
T Consensus 117 ~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkn-----gVQAmVEFdsv~~AqrAk~alNGADIYsGCCTL 191 (494)
T KOG1456|consen 117 ATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKN-----GVQAMVEFDSVEVAQRAKAALNGADIYSGCCTL 191 (494)
T ss_pred CCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEecc-----ceeeEEeechhHHHHHHHhhcccccccccceeE
Confidence 33444443 56777899999999999999999999998752 2468888888877765555554 69999
Q ss_pred eeeeeecccceEeecCCccccccCCc--cccc-cee-eEEecCCcCHHHHHHhcCcccc-----------CccccCCCCh
Q 006380 289 KFFLVAEVGMVFFLLGDETYTVLDPA--TVLV-SYR-YIEFYDVMSVPMAIALSGQLLL-----------GQPVMVKPSE 353 (647)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~a-fv~f~~~~~a~~al~l~g~~~~-----------g~~l~v~~~~ 353 (647)
++.+........+.|...+-.-..+. +... +-+ |--+. +.+.+..+-.... +.+..+-|+.
T Consensus 192 KIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~----~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r 267 (494)
T KOG1456|consen 192 KIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQR----QPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSR 267 (494)
T ss_pred EEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCcccc----CCCccCCChhhcCCCCCCCcccccCCCCCCCCCC
Confidence 99999877777777766442211111 1000 000 11110 0011100000111 1111111111
Q ss_pred hhhhhhcccccCCCCCCCCCCCCCceEEEcCCCCC-CCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHH
Q 006380 354 AEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFN-MTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHA 432 (647)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~-~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A 432 (647)
....... . .+.++...+.+...++|.+|... +..+.|..+|..||.|..|.+++.+ .|.|.|++.+....
T Consensus 268 ~~~~~~~--~--~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~av 338 (494)
T KOG1456|consen 268 YRDGYRD--G--RGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAV 338 (494)
T ss_pred Ccccccc--C--CCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHH
Confidence 1000000 0 11222344556789999999765 4778899999999999999999876 78899999999999
Q ss_pred HHHHHHHcCCeeeCCeEEEEEeecCCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCC
Q 006380 433 KAAQSALNGKLEIVGRTLKVSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAV 512 (647)
Q Consensus 433 ~~Al~~l~g~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (647)
+.|+..|++. .+.|.+|.|..++...-... ..+.-.++. ..+.. +
T Consensus 339 er~v~hLnn~-~lfG~kl~v~~SkQ~~v~~~-----~pflLpDgS-pSfKd---------y------------------- 383 (494)
T KOG1456|consen 339 ERAVTHLNNI-PLFGGKLNVCVSKQNFVSPV-----QPFLLPDGS-PSFKD---------Y------------------- 383 (494)
T ss_pred HHHHHHhccC-ccccceEEEeeccccccccC-----CceecCCCC-cchhh---------c-------------------
Confidence 9999999995 68999999988763221111 000000000 00000 0
Q ss_pred CCccccccccccCccCCCCCCCCCCCCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCC-e
Q 006380 513 NGSAVNQQAISLPVVGQPAVPVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGR-V 591 (647)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~-v 591 (647)
.+...+ .+..+ ...+.....+|+++|+..|. |..++ ++.|..+|...+. .
T Consensus 384 s~SkNn------------RFssp-------~qAsKNrIq~Ps~vLHffNa--P~~vt--------Ee~l~~i~nek~v~~ 434 (494)
T KOG1456|consen 384 SGSKNN------------RFSSP-------EQASKNRIQPPSNVLHFFNA--PLGVT--------EEQLIGICNEKDVPP 434 (494)
T ss_pred cccccc------------ccCCh-------hHhhcccccCCcceeEEecC--CCccC--------HHHHHHHhhhcCCCc
Confidence 000000 00000 00111123578899999999 99888 8999999987664 3
Q ss_pred EEEEEecC---CCceEEEEeCCHHHHHHHHHHhcCcccCC------eEEEEEEcChhh
Q 006380 592 KHIYVDKR---SAGFVYLRFESTEAAASAQRAMHMRWFAR------RLISAIFMKPED 640 (647)
Q Consensus 592 ~~v~l~~~---~~g~afV~F~~~~~A~~A~~~l~g~~~~G------r~l~v~~~~~~~ 640 (647)
++|+|... -.-.+++||++.++|..||..||-..+.| .+|++.|.+..-
T Consensus 435 ~svkvFp~kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~~ 492 (494)
T KOG1456|consen 435 TSVKVFPLKSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSKH 492 (494)
T ss_pred ceEEeecccccccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeeccccc
Confidence 45655321 13467999999999999999999998864 688999888754
No 57
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.53 E-value=2.9e-14 Score=140.51 Aligned_cols=170 Identities=22% Similarity=0.402 Sum_probs=143.3
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
.++|+|++|++.++++.|++.|.+||.|..+.+++++.++.++||+||.|.+.+....+|..-.. .|+|+.|.+..+.
T Consensus 6 ~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h--~~dgr~ve~k~av 83 (311)
T KOG4205|consen 6 SGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTH--KLDGRSVEPKRAV 83 (311)
T ss_pred CcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeeccccc--ccCCccccceecc
Confidence 38999999999999999999999999999999999999999999999999999999999855444 5999999998877
Q ss_pred CCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCCCCCCC
Q 006380 457 DHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPA 536 (647)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (647)
+....+...
T Consensus 84 ~r~~~~~~~----------------------------------------------------------------------- 92 (311)
T KOG4205|consen 84 SREDQTKVG----------------------------------------------------------------------- 92 (311)
T ss_pred Ccccccccc-----------------------------------------------------------------------
Confidence 422111000
Q ss_pred CCCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCH
Q 006380 537 VTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFEST 611 (647)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~ 611 (647)
....+..|+|..| |..++ ++++++.|.+||.|..+.++.+ ++|++||.|.+.
T Consensus 93 -------------~~~~tkkiFvGG~--~~~~~--------e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e 149 (311)
T KOG4205|consen 93 -------------RHLRTKKIFVGGL--PPDTT--------EEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSE 149 (311)
T ss_pred -------------cccceeEEEecCc--CCCCc--------hHHHhhhhhccceeEeeEEeecccccccccceeeEeccc
Confidence 0124568999999 88887 7999999999998888877533 689999999999
Q ss_pred HHHHHHHHHhcCcccCCeEEEEEEcChhhhhh
Q 006380 612 EAAASAQRAMHMRWFARRLISAIFMKPEDYEA 643 (647)
Q Consensus 612 ~~A~~A~~~l~g~~~~Gr~l~v~~~~~~~~~~ 643 (647)
+...+++. ..-..|.|+.|.|--|.|.+...
T Consensus 150 ~sVdkv~~-~~f~~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 150 DSVDKVTL-QKFHDFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred cccceecc-cceeeecCceeeEeeccchhhcc
Confidence 99998866 68889999999999998887543
No 58
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=9.5e-13 Score=114.77 Aligned_cols=171 Identities=21% Similarity=0.311 Sum_probs=129.0
Q ss_pred CCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeeccc
Q 006380 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVG 297 (647)
Q Consensus 218 ~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (647)
+..++|||||||.++-+.+|.++|-+||.|..|.|..-. ...+
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~pp---------------------------------- 46 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPP---------------------------------- 46 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCC----------------------------------
Confidence 457899999999999999999999999999999884322 1233
Q ss_pred ceEeecCCccccccCCcccccceeeEEecCCcCHHHHHH-hcCccccCccccCCCChhhhhhhcccccC-----C-----
Q 006380 298 MVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSA-----G----- 366 (647)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~-l~g~~~~g~~l~v~~~~~~~~~~~~~~~~-----~----- 366 (647)
||||+|.++-+|.-|+. -+|-.+.|..|.|..+............. .
T Consensus 47 ----------------------fafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr~s~~~~G~y~gggrgGgg~g 104 (241)
T KOG0105|consen 47 ----------------------FAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGRSSSDRRGSYSGGGRGGGGGG 104 (241)
T ss_pred ----------------------eeEEEecCccchhhhhhcccccccCcceEEEEeccCCCcccccccccCCCCCCCCCCC
Confidence 44999999999999994 89999999999998765433211111100 0
Q ss_pred CCCCCCCCCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCC-eee
Q 006380 367 GTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK-LEI 445 (647)
Q Consensus 367 ~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~-~~~ 445 (647)
+.-..+.--....|+|.+||.+.+-+||++.+.+.|.|....+.+| |++.|+|...++.+-|+..|..+ +.-
T Consensus 105 g~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 105 GRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred cccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccccC
Confidence 0011111222468999999999999999999999999988888765 48899999999999999999876 333
Q ss_pred CCeEEEEEe
Q 006380 446 VGRTLKVSS 454 (647)
Q Consensus 446 ~g~~l~v~~ 454 (647)
.|.+..|..
T Consensus 178 eGe~~yirv 186 (241)
T KOG0105|consen 178 EGETAYIRV 186 (241)
T ss_pred cCcEeeEEe
Confidence 455554443
No 59
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=1.5e-13 Score=126.84 Aligned_cols=168 Identities=21% Similarity=0.364 Sum_probs=127.0
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecC
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 457 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~ 457 (647)
..+||++||+.+.+.+|..+|..||.|..|.|. .||+||+|.+..+|..|+..|++. .|.|-.+.|.|+..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~-~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGK-ELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCc-eecceeeeeecccc
Confidence 479999999999999999999999999988773 568899999999999999999997 68888899988763
Q ss_pred CCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCCCCCCCC
Q 006380 458 HVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPAV 537 (647)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (647)
....+ +.+.++ .... +.....
T Consensus 73 ~~~~~------------------------------------g~~~~g---~r~~------~~~~~~-------------- 93 (216)
T KOG0106|consen 73 KRRGR------------------------------------GRPRGG---DRRS------DSRRYR-------------- 93 (216)
T ss_pred ccccc------------------------------------CCCCCC---Cccc------hhhccC--------------
Confidence 22111 000000 0000 000000
Q ss_pred CCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHH
Q 006380 538 TAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASA 617 (647)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A 617 (647)
. .......|+|.|+ +..+. +.+|.+.|+++|.+....+ ..+++||+|++.++|.+|
T Consensus 94 ----~-------p~~s~~r~~~~~~--~~r~~--------~qdl~d~~~~~g~~~~~~~---~~~~~~v~Fs~~~da~ra 149 (216)
T KOG0106|consen 94 ----P-------PSRTHFRLIVRNL--SLRVS--------WQDLKDHFRPAGEVTYVDA---RRNFAFVEFSEQEDAKRA 149 (216)
T ss_pred ----C-------cccccceeeeccc--hhhhh--------HHHHhhhhcccCCCchhhh---hccccceeehhhhhhhhc
Confidence 0 0123346888888 55544 7999999999999966665 477999999999999999
Q ss_pred HHHhcCcccCCeEEEEEEcC
Q 006380 618 QRAMHMRWFARRLISAIFMK 637 (647)
Q Consensus 618 ~~~l~g~~~~Gr~l~v~~~~ 637 (647)
+..|+|..+.|+.|++.+..
T Consensus 150 ~~~l~~~~~~~~~l~~~~~~ 169 (216)
T KOG0106|consen 150 LEKLDGKKLNGRRISVEKNS 169 (216)
T ss_pred chhccchhhcCceeeecccC
Confidence 99999999999999995543
No 60
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.44 E-value=2.8e-12 Score=123.05 Aligned_cols=188 Identities=21% Similarity=0.203 Sum_probs=130.5
Q ss_pred CCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeeccc
Q 006380 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVG 297 (647)
Q Consensus 218 ~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (647)
.-+..|||.|||.++|.+++.++|+.||.| +.+..||.++-=
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI-----~~d~~t~epk~K--------------------------------- 173 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGII-----MRDPQTGEPKVK--------------------------------- 173 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceE-----eccCCCCCeeEE---------------------------------
Confidence 456679999999999999999999999964 334333322110
Q ss_pred ceEeecCCccccccCCcccccceeeEEecCCcCHHHHHH-hcCccccCccccCCCChhhhhhhc----------------
Q 006380 298 MVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQ---------------- 360 (647)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~-l~g~~~~g~~l~v~~~~~~~~~~~---------------- 360 (647)
--.+..|..++-|.+.|...++...|+. |++..+.|..|.|..+........
T Consensus 174 -----------lYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~ 242 (382)
T KOG1548|consen 174 -----------LYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKL 242 (382)
T ss_pred -----------EEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEEEEehhhhhhccCcCcccccccccccHHHH
Confidence 0012233444455999999999999996 899999999999965432211100
Q ss_pred -----ccccCCCC-CCCCCCCCCceEEEcCCCCC----CC-------HHHHHHhhccCCCeeEEEeccCCCCCCeeeEEE
Q 006380 361 -----SNTSAGGT-ATGPYGAIDRKLYVGNLHFN----MT-------ETQLRKLFEPFGPVELVQLPLDIETGQCKGFGF 423 (647)
Q Consensus 361 -----~~~~~~~~-~~~~~~~~~~~l~v~nLp~~----~~-------e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~af 423 (647)
........ ....-....++|.|.||-.. .+ .++|.+.+++||.|..|.|.-. .+.|.+-
T Consensus 243 ~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~----hPdGvvt 318 (382)
T KOG1548|consen 243 KKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR----HPDGVVT 318 (382)
T ss_pred HHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc----CCCceeE
Confidence 00000111 11111223589999998432 22 2677788999999999988532 3589999
Q ss_pred EEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecCCC
Q 006380 424 VQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHV 459 (647)
Q Consensus 424 V~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~~~ 459 (647)
|.|.+.++|..|++.|+|+ +|+|++|.........
T Consensus 319 V~f~n~eeA~~ciq~m~GR-~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 319 VSFRNNEEADQCIQTMDGR-WFDGRQLTASIWDGKT 353 (382)
T ss_pred EEeCChHHHHHHHHHhcCe-eecceEEEEEEeCCcc
Confidence 9999999999999999998 6999999988766443
No 61
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.40 E-value=1.6e-12 Score=115.57 Aligned_cols=79 Identities=19% Similarity=0.203 Sum_probs=71.1
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCHHHHHHHHHHhcCccc
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAMHMRWF 626 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~~~A~~A~~~l~g~~~ 626 (647)
..++.|||.|| |..++ +++|+++|.+||.|..|.|..+ ++|+|||+|.+.++|..|++.|||..|
T Consensus 32 ~~~~~lfVgnL--~~~~t--------e~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i 101 (144)
T PLN03134 32 LMSTKLFIGGL--SWGTD--------DASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKEL 101 (144)
T ss_pred CCCCEEEEeCC--CCCCC--------HHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 34568999999 88887 8999999999999999988644 589999999999999999999999999
Q ss_pred CCeEEEEEEcChhh
Q 006380 627 ARRLISAIFMKPED 640 (647)
Q Consensus 627 ~Gr~l~v~~~~~~~ 640 (647)
.|+.|+|.++.+..
T Consensus 102 ~Gr~l~V~~a~~~~ 115 (144)
T PLN03134 102 NGRHIRVNPANDRP 115 (144)
T ss_pred CCEEEEEEeCCcCC
Confidence 99999999987643
No 62
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.39 E-value=1.4e-11 Score=121.29 Aligned_cols=239 Identities=20% Similarity=0.251 Sum_probs=138.9
Q ss_pred CceEEEcCCCCCCCHHHHHHhhc-cCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEee
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFE-PFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 455 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~-~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~ 455 (647)
.+.+||.|||+.+...+|+++|. +.|.|+.|.|+.|. .|+++|+|.|+|++++.+++|++.|+. +.+.|++|.|.--
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk-~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNK-YEVNGRELVVKED 121 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhh-ccccCceEEEecc
Confidence 36799999999999999999997 78999999999996 999999999999999999999999999 5899999999654
Q ss_pred cCCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCC-CCccc-ccc-ccccCccCCCCC
Q 006380 456 TDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAV-NGSAV-NQQ-AISLPVVGQPAV 532 (647)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~-~~~~~~~~~~~~ 532 (647)
-+..-.+.. ...-.......-.+..+. -...+.......... .-+...-. ....- +.. .....+......
T Consensus 122 ~d~q~~~~~---~~~r~g~~~f~~~~~~q~---G~~~l~~~g~ggG~~-~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~ 194 (608)
T KOG4212|consen 122 HDEQRDQYG---RIVRDGGGGFGGGGGVQG---GNGGLNGGGGGGGDR-DRGFSRRDDDRLSRRNNTNTMSNDYNNSSNY 194 (608)
T ss_pred Cchhhhhhh---heeeccCcccccCcceec---ccccccccCCCCccc-cCCCCcccccccccccCccccccccccchhh
Confidence 332111110 000000000000000000 000000000000000 00000000 00000 000 000000000000
Q ss_pred CCCCCCCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEE--e--cCCCceEEEEe
Q 006380 533 PVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYV--D--KRSAGFVYLRF 608 (647)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l--~--~~~~g~afV~F 608 (647)
..-+.++..+-..- ...++-...++|.|| -..+. ...|.+.|.--|.|+.|.+ . ..++|+|.++|
T Consensus 195 ~lfgl~~~Flr~~h-~f~pPl~~k~fvanl--~~~vg--------~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y 263 (608)
T KOG4212|consen 195 NLFGLSASFLRSLH-IFSPPLHNKVFVANL--DYKVG--------NKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEY 263 (608)
T ss_pred hcccchhhhhhhcc-CCCCCccceeeeecc--ccccc--------hHHHHHHhccceeeeeeceeeccccccCCeeEEEe
Confidence 01111110000000 012233456899999 55544 4789999999999999865 2 34689999999
Q ss_pred CCHHHHHHHHHHhcCcccCCeEEEEEE
Q 006380 609 ESTEAAASAQRAMHMRWFARRLISAIF 635 (647)
Q Consensus 609 ~~~~~A~~A~~~l~g~~~~Gr~l~v~~ 635 (647)
..+-+|-.||..|++.-+..+++++.+
T Consensus 264 ~hpveavqaIsml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 264 DHPVEAVQAISMLDRQGLFDRRMTVRL 290 (608)
T ss_pred cchHHHHHHHHhhccCCCccccceeec
Confidence 999999999999998777778877766
No 63
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.39 E-value=2.1e-12 Score=100.60 Aligned_cols=70 Identities=43% Similarity=0.778 Sum_probs=66.2
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEE
Q 006380 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLK 451 (647)
Q Consensus 380 l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~ 451 (647)
|||+|||..+++++|+++|+.||.|..+.+..+ .++..+|+|||+|.+.++|..|++.|+|. .|.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~-~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGK-KINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTE-EETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCC-EECccCcC
Confidence 799999999999999999999999999999887 48899999999999999999999999994 89999885
No 64
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=1.4e-12 Score=106.76 Aligned_cols=78 Identities=28% Similarity=0.447 Sum_probs=74.2
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
++|||+||.+.++|+.|.++|+++|+|..|.|-.|+.+-...|||||+|.+.++|..||..++|. .++.++|.|.|--
T Consensus 37 ~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryisgt-rLddr~ir~D~D~ 114 (153)
T KOG0121|consen 37 CTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGT-RLDDRPIRIDWDA 114 (153)
T ss_pred ceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccC-cccccceeeeccc
Confidence 89999999999999999999999999999999888888899999999999999999999999996 7999999998843
No 65
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.35 E-value=2.7e-11 Score=121.89 Aligned_cols=169 Identities=21% Similarity=0.281 Sum_probs=124.5
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecC
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 457 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~ 457 (647)
..|.+.+|||.+|+++|+++|+.++ |+.+.+.+. +|+..|-|||+|.+.+++.+|| +++. ..+..+-|.|-.+..
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Al-kkdR-~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKAL-KKDR-ESMGHRYIEVFTAGG 85 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHH-HhhH-HHhCCceEEEEccCC
Confidence 6788999999999999999999986 777777665 7999999999999999999999 5555 368888899977653
Q ss_pred CCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCCCCCCCC
Q 006380 458 HVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPAV 537 (647)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (647)
........ . .+
T Consensus 86 ~e~d~~~~---------------------------------------~-----------------------------~g- 96 (510)
T KOG4211|consen 86 AEADWVMR---------------------------------------P-----------------------------GG- 96 (510)
T ss_pred cccccccc---------------------------------------C-----------------------------CC-
Confidence 22110000 0 00
Q ss_pred CCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEE-EEEec----CCCceEEEEeCCHH
Q 006380 538 TAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKH-IYVDK----RSAGFVYLRFESTE 612 (647)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~-v~l~~----~~~g~afV~F~~~~ 612 (647)
+. ...+..+|.|.+| |...+ ++||.+||+..-.|.. |.++. .+.|-|||+|++.+
T Consensus 97 -----~~-----s~~~d~vVRLRGL--Pfsct--------e~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe 156 (510)
T KOG4211|consen 97 -----PN-----SSANDGVVRLRGL--PFSCT--------EEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQE 156 (510)
T ss_pred -----CC-----CCCCCceEEecCC--CccCc--------HHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHH
Confidence 00 0123458999999 99988 8999999998766655 33332 25789999999999
Q ss_pred HHHHHHHHhcCcccCCeEEEEEEcChhhh
Q 006380 613 AAASAQRAMHMRWFARRLISAIFMKPEDY 641 (647)
Q Consensus 613 ~A~~A~~~l~g~~~~Gr~l~v~~~~~~~~ 641 (647)
.|.+|+.. |...|+-+=|.|=-++-.++
T Consensus 157 ~ae~Al~r-hre~iGhRYIEvF~Ss~~e~ 184 (510)
T KOG4211|consen 157 SAEIALGR-HRENIGHRYIEVFRSSRAEV 184 (510)
T ss_pred HHHHHHHH-HHHhhccceEEeehhHHHHH
Confidence 99999874 66667666666644444443
No 66
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=3.3e-12 Score=116.84 Aligned_cols=81 Identities=38% Similarity=0.554 Sum_probs=77.2
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
..+|.|.||+..+++.+|.++|.+||.|..|.|.+|+.||.++|||||.|.+.++|.+||..|+| +-++.-.|.|.|++
T Consensus 189 ~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG-~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 189 EATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNG-YGYDNLILRVEWSK 267 (270)
T ss_pred cceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccC-cccceEEEEEEecC
Confidence 47899999999999999999999999999999999999999999999999999999999999999 57899999999998
Q ss_pred CC
Q 006380 457 DH 458 (647)
Q Consensus 457 ~~ 458 (647)
+.
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 64
No 67
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.34 E-value=1e-11 Score=96.72 Aligned_cols=70 Identities=49% Similarity=0.770 Sum_probs=63.7
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEE
Q 006380 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLK 451 (647)
Q Consensus 380 l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~ 451 (647)
|||+|||+.+++++|.++|+.||.|..|.+..++. +..+|+|||+|.+.++|..|+..+++ ..|.|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~-~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNG-KEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTT-EEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCC-cEECCEEcC
Confidence 79999999999999999999999999999999875 89999999999999999999999887 479999874
No 68
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=1.8e-12 Score=119.73 Aligned_cols=161 Identities=30% Similarity=0.498 Sum_probs=127.9
Q ss_pred ceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecccceE
Q 006380 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVGMVF 300 (647)
Q Consensus 221 ~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (647)
..||||+||+.+.+.+|..+|..||.|..|.|. .||+
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~----------------------------------- 38 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFG----------------------------------- 38 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccc-----------------------------------
Confidence 368999999999999999999999999888874 3666
Q ss_pred eecCCccccccCCcccccceeeEEecCCcCHHHHH-HhcCccccCccccCCCChhhhhhhcccccC----CCCCCCCCCC
Q 006380 301 FLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSA----GGTATGPYGA 375 (647)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al-~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~----~~~~~~~~~~ 375 (647)
||+|.++.+|.-|+ .+++..+.|..+.|.++............. ....-.+...
T Consensus 39 ---------------------fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~~~~g~r~~~~~~~~~p~~ 97 (216)
T KOG0106|consen 39 ---------------------FVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGRPRGGDRRSDSRRYRPPSR 97 (216)
T ss_pred ---------------------eeccCchhhhhcccchhcCceecceeeeeecccccccccCCCCCCCccchhhccCCccc
Confidence 99999999999999 699999999888887776443332111110 0111122233
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEe
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 454 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~ 454 (647)
..+.|+|.+++..+...+|.+.|.++|.+....+ ..+++||+|...++|..||..|++. .+.|+.|.+.+
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~-~~~~~~l~~~~ 167 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGK-KLNGRRISVEK 167 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccch-hhcCceeeecc
Confidence 4578999999999999999999999999854444 2678999999999999999999996 89999999943
No 69
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=2.8e-13 Score=117.86 Aligned_cols=81 Identities=31% Similarity=0.598 Sum_probs=76.9
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecC
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 457 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~ 457 (647)
.-|||+|||+.+||.||..+|++||.|..|.|++|..||+++||||+.|.+.-+...|+..||| +.|.|++|+|..+..
T Consensus 36 A~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NG-iki~gRtirVDHv~~ 114 (219)
T KOG0126|consen 36 AYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNG-IKILGRTIRVDHVSN 114 (219)
T ss_pred eEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCC-ceecceeEEeeeccc
Confidence 6899999999999999999999999999999999999999999999999999999999999999 799999999988764
Q ss_pred CC
Q 006380 458 HV 459 (647)
Q Consensus 458 ~~ 459 (647)
..
T Consensus 115 Yk 116 (219)
T KOG0126|consen 115 YK 116 (219)
T ss_pred cc
Confidence 43
No 70
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=6.5e-12 Score=118.12 Aligned_cols=87 Identities=30% Similarity=0.596 Sum_probs=79.8
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeE
Q 006380 370 TGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRT 449 (647)
Q Consensus 370 ~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~ 449 (647)
+...+-+-++|||+-|++.++|..|+..|+.||+|..|.|+.+..||+++|||||+|.+.-+...|.+..+| ++|+|+.
T Consensus 94 p~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG-~~Idgrr 172 (335)
T KOG0113|consen 94 PNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADG-IKIDGRR 172 (335)
T ss_pred CcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccC-ceecCcE
Confidence 334445569999999999999999999999999999999999999999999999999999999999999999 5899999
Q ss_pred EEEEeecC
Q 006380 450 LKVSSVTD 457 (647)
Q Consensus 450 l~v~~~~~ 457 (647)
|.|.+---
T Consensus 173 i~VDvERg 180 (335)
T KOG0113|consen 173 ILVDVERG 180 (335)
T ss_pred EEEEeccc
Confidence 99988653
No 71
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.31 E-value=9.8e-11 Score=121.62 Aligned_cols=181 Identities=18% Similarity=0.099 Sum_probs=129.2
Q ss_pred CCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecccc
Q 006380 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVGM 298 (647)
Q Consensus 219 ~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (647)
+..-+-+.++++++.+.+++++|... .|..+.|..+...+.-.|.+
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~--------------------------------- 355 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRK--------------------------------- 355 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCce---------------------------------
Confidence 34556678999999999999999543 24445555444444335666
Q ss_pred eEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCChhhhhhhcc-----------------
Q 006380 299 VFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQS----------------- 361 (647)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~~~~~~~~~----------------- 361 (647)
||+|..+.+++.|+.-|...+-.+.+.+.++.........
T Consensus 356 -----------------------~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~ 412 (944)
T KOG4307|consen 356 -----------------------TVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGR 412 (944)
T ss_pred -----------------------EEEecCcchHHHHHhcCchhhhhcceeecCCCccccccCccccccCCCCcccccCCC
Confidence 9999999999999998888887777777654322111100
Q ss_pred -ccc-----CCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHhhccCCCeeE-EEeccCCCCCCeeeEEEEEeCCHHHHHH
Q 006380 362 -NTS-----AGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVEL-VQLPLDIETGQCKGFGFVQFAQLEHAKA 434 (647)
Q Consensus 362 -~~~-----~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~-v~i~~~~~~~~~~g~afV~f~~~~~A~~ 434 (647)
... ..+.......+.+.+|||..||..+++.++.++|...-.|++ |.|...+ ++..++.|||.|.+.+.+..
T Consensus 413 p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~ 491 (944)
T KOG4307|consen 413 PIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLT 491 (944)
T ss_pred CCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccch
Confidence 000 011111122334689999999999999999999998877777 7776665 88889999999999999999
Q ss_pred HHHHHcCCeeeCCeEEEEEeecCC
Q 006380 435 AQSALNGKLEIVGRTLKVSSVTDH 458 (647)
Q Consensus 435 Al~~l~g~~~~~g~~l~v~~~~~~ 458 (647)
|+..-+. ++++-+.|.|....++
T Consensus 492 a~~~~~k-~y~G~r~irv~si~~~ 514 (944)
T KOG4307|consen 492 ASSVKTK-FYPGHRIIRVDSIADY 514 (944)
T ss_pred hhhcccc-cccCceEEEeechhhH
Confidence 9855555 5678889999877664
No 72
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.30 E-value=8.1e-12 Score=97.23 Aligned_cols=66 Identities=27% Similarity=0.478 Sum_probs=61.4
Q ss_pred EEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC----CCceEEEEeCCHHHHHHHHHHhcCcccCCeEEE
Q 006380 557 LLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR----SAGFVYLRFESTEAAASAQRAMHMRWFARRLIS 632 (647)
Q Consensus 557 l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~----~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l~ 632 (647)
|+|.|| |..++ +++|.++|++||.|..+.+..+ .+|+|||+|.+.++|.+|++.|+|..|+|++|+
T Consensus 1 l~v~nl--p~~~t--------~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNL--PPDVT--------EEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESE--TTTSS--------HHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCC--CCcCC--------HHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999 99888 8999999999999999988653 588999999999999999999999999999985
No 73
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.30 E-value=4.9e-12 Score=112.50 Aligned_cols=81 Identities=35% Similarity=0.537 Sum_probs=77.3
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecC
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 457 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~ 457 (647)
..|.|.||-+-++.++|..+|++||.|-+|.|+.|..|+.++|||||.|....+|+.||.+|+|. .++|+.|.|++|.-
T Consensus 14 ~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~-~ldgRelrVq~ary 92 (256)
T KOG4207|consen 14 TSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGA-VLDGRELRVQMARY 92 (256)
T ss_pred eeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcce-eeccceeeehhhhc
Confidence 78999999999999999999999999999999999999999999999999999999999999996 69999999999875
Q ss_pred CC
Q 006380 458 HV 459 (647)
Q Consensus 458 ~~ 459 (647)
..
T Consensus 93 gr 94 (256)
T KOG4207|consen 93 GR 94 (256)
T ss_pred CC
Confidence 43
No 74
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.30 E-value=1.4e-11 Score=91.07 Aligned_cols=56 Identities=30% Similarity=0.477 Sum_probs=51.7
Q ss_pred HHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCCeEEEEEEc
Q 006380 581 VEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFM 636 (647)
Q Consensus 581 l~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l~v~~~ 636 (647)
|.++|++||.|..|.+.....++|||+|.+.++|..|+..|||..|.|++|+|+|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999998766799999999999999999999999999999999985
No 75
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.29 E-value=1.2e-11 Score=117.70 Aligned_cols=81 Identities=21% Similarity=0.268 Sum_probs=73.1
Q ss_pred CceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEe---cCCCceEEEEeCCHHHHHHHHHHhcCcccCCeE
Q 006380 554 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVD---KRSAGFVYLRFESTEAAASAQRAMHMRWFARRL 630 (647)
Q Consensus 554 ~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~---~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~ 630 (647)
.+.|+|.|| |+... +-||+.+|.+||.|..|.|. +.++||+||+|++.++|.+|..+|||..+.||+
T Consensus 96 pkRLhVSNI--PFrFR--------dpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRk 165 (376)
T KOG0125|consen 96 PKRLHVSNI--PFRFR--------DPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRK 165 (376)
T ss_pred CceeEeecC--Ccccc--------CccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceE
Confidence 357999999 99887 48999999999999999885 347999999999999999999999999999999
Q ss_pred EEEEEcChhhhhhc
Q 006380 631 ISAIFMKPEDYEAK 644 (647)
Q Consensus 631 l~v~~~~~~~~~~~ 644 (647)
|.|..++..-..+|
T Consensus 166 IEVn~ATarV~n~K 179 (376)
T KOG0125|consen 166 IEVNNATARVHNKK 179 (376)
T ss_pred EEEeccchhhccCC
Confidence 99999998765544
No 76
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=1.9e-11 Score=96.39 Aligned_cols=82 Identities=21% Similarity=0.355 Sum_probs=73.8
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEe--cCCCceEEEEeCCHHHHHHHHHHhcCcccCCe
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVD--KRSAGFVYLRFESTEAAASAQRAMHMRWFARR 629 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~--~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr 629 (647)
..++.|||.|| |..++ .+++-++|.+||.|..|.|- +.-+|.|||-|+++.+|.+|+.+|+|.-+.++
T Consensus 16 evnriLyirNL--p~~IT--------seemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~r 85 (124)
T KOG0114|consen 16 EVNRILYIRNL--PFKIT--------SEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNR 85 (124)
T ss_pred hhheeEEEecC--Ccccc--------HHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCc
Confidence 44678999999 99988 79999999999999999984 44689999999999999999999999999999
Q ss_pred EEEEEEcChhhhhh
Q 006380 630 LISAIFMKPEDYEA 643 (647)
Q Consensus 630 ~l~v~~~~~~~~~~ 643 (647)
-|.|-|..+.+-..
T Consensus 86 yl~vlyyq~~~~~~ 99 (124)
T KOG0114|consen 86 YLVVLYYQPEDAFK 99 (124)
T ss_pred eEEEEecCHHHHHH
Confidence 99999998877443
No 77
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=3e-11 Score=95.23 Aligned_cols=77 Identities=27% Similarity=0.473 Sum_probs=70.9
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
++.|||.|||+.+|.+++.++|.+||.|..|+|-..+ ..+|.|||.|.+..+|.+|+..|+| +.+.++.+.|.|.+
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg-~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSG-YNVDNRYLVVLYYQ 93 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcc-cccCCceEEEEecC
Confidence 5899999999999999999999999999999996644 4589999999999999999999999 58999999999976
Q ss_pred C
Q 006380 457 D 457 (647)
Q Consensus 457 ~ 457 (647)
+
T Consensus 94 ~ 94 (124)
T KOG0114|consen 94 P 94 (124)
T ss_pred H
Confidence 4
No 78
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=1e-11 Score=107.92 Aligned_cols=76 Identities=34% Similarity=0.602 Sum_probs=71.0
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
.++|||+||+..+++.+|..+|..||+|..|+|-..+ .|||||+|.++-+|..|+..|+|+ .|.|..|.|..+.
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~-~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGK-DICGSRIRVELST 83 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCc-cccCceEEEEeec
Confidence 4899999999999999999999999999999998775 899999999999999999999998 7999999999887
Q ss_pred CC
Q 006380 457 DH 458 (647)
Q Consensus 457 ~~ 458 (647)
-.
T Consensus 84 G~ 85 (195)
T KOG0107|consen 84 GR 85 (195)
T ss_pred CC
Confidence 43
No 79
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=2.5e-11 Score=115.68 Aligned_cols=78 Identities=33% Similarity=0.613 Sum_probs=74.0
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecC
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 457 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~ 457 (647)
++|+|.|||+..-+-||+.+|++||.|.+|.|+.+ ..-+|||+||.|.+.++|.+|-++|||. .|.|++|.|..++.
T Consensus 97 kRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt-~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 97 KRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGT-VVEGRKIEVNNATA 173 (376)
T ss_pred ceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcc-eeeceEEEEeccch
Confidence 89999999999999999999999999999999987 5668999999999999999999999998 59999999999986
Q ss_pred C
Q 006380 458 H 458 (647)
Q Consensus 458 ~ 458 (647)
.
T Consensus 174 r 174 (376)
T KOG0125|consen 174 R 174 (376)
T ss_pred h
Confidence 5
No 80
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.23 E-value=4.6e-11 Score=113.49 Aligned_cols=77 Identities=25% Similarity=0.431 Sum_probs=70.8
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecC
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 457 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~ 457 (647)
++|||+|||+.+++++|+++|+.||.|..|.|+.+.. .+|||||+|.+.++|..|| .|+|. .|.|+.|.|.++.+
T Consensus 5 rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~-~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 5 RTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGA-TIVDQSVTITPAED 79 (260)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCC-eeCCceEEEEeccC
Confidence 7999999999999999999999999999999988752 4799999999999999999 69997 79999999999875
Q ss_pred CC
Q 006380 458 HV 459 (647)
Q Consensus 458 ~~ 459 (647)
..
T Consensus 80 ~~ 81 (260)
T PLN03120 80 YQ 81 (260)
T ss_pred CC
Confidence 54
No 81
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=2.6e-11 Score=105.42 Aligned_cols=75 Identities=21% Similarity=0.388 Sum_probs=69.8
Q ss_pred CceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCCeEEEE
Q 006380 554 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISA 633 (647)
Q Consensus 554 ~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l~v 633 (647)
.+.|||.|| +..++ +.+|..+|..||.|..|-|..++.|||||+|+++-+|..|+..|+|..|.|..|.|
T Consensus 10 ~~kVYVGnL--~~~a~--------k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rV 79 (195)
T KOG0107|consen 10 NTKVYVGNL--GSRAT--------KRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRV 79 (195)
T ss_pred CceEEeccC--CCCcc--------hHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEE
Confidence 457999999 77776 78999999999999999999899999999999999999999999999999999999
Q ss_pred EEcCh
Q 006380 634 IFMKP 638 (647)
Q Consensus 634 ~~~~~ 638 (647)
++.+-
T Consensus 80 E~S~G 84 (195)
T KOG0107|consen 80 ELSTG 84 (195)
T ss_pred EeecC
Confidence 98654
No 82
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.21 E-value=1.5e-11 Score=112.27 Aligned_cols=78 Identities=33% Similarity=0.541 Sum_probs=72.3
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
.++|||++|+|.+..+.|++.|++||+|.+..|+.|+.+|+++||+||.|.+.+.|.+|++..+- + |+|++.-+..|.
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~p-i-IdGR~aNcnlA~ 89 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNP-I-IDGRKANCNLAS 89 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCC-c-ccccccccchhh
Confidence 47999999999999999999999999999999999999999999999999999999999977766 4 999998777665
No 83
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.20 E-value=3.6e-11 Score=99.44 Aligned_cols=81 Identities=31% Similarity=0.543 Sum_probs=77.1
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
...|||.++...+++++|.+.|..||+|..|.|-.|..||..+|||+|+|.+..+|+.|+..|||. .+.|+.|.|.||-
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~-~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGA-ELLGQNVSVDWCF 150 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccch-hhhCCceeEEEEE
Confidence 479999999999999999999999999999999999999999999999999999999999999995 8999999999997
Q ss_pred CC
Q 006380 457 DH 458 (647)
Q Consensus 457 ~~ 458 (647)
..
T Consensus 151 v~ 152 (170)
T KOG0130|consen 151 VK 152 (170)
T ss_pred ec
Confidence 43
No 84
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.20 E-value=1.2e-10 Score=104.88 Aligned_cols=62 Identities=26% Similarity=0.476 Sum_probs=52.2
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCC
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK 442 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~ 442 (647)
..+|||.||...++|++|+.+|+.|.....++|-.. .| -.+|||+|...+.|..|+..|.|.
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~am~~lqg~ 271 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFEEIEQATDAMNHLQGN 271 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHHHHHHHHHHHHHhhcc
Confidence 468999999999999999999999987766666322 22 348999999999999999999885
No 85
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.18 E-value=9.6e-11 Score=111.35 Aligned_cols=73 Identities=14% Similarity=0.196 Sum_probs=67.0
Q ss_pred CceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC--CCceEEEEeCCHHHHHHHHHHhcCcccCCeEE
Q 006380 554 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR--SAGFVYLRFESTEAAASAQRAMHMRWFARRLI 631 (647)
Q Consensus 554 ~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~--~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l 631 (647)
.++|||.|| |..++ +++|+++|+.||.|+.|.|..+ .+|+|||+|.+.++|..|+. |||..|.|+.|
T Consensus 4 ~rtVfVgNL--s~~tT--------E~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V 72 (260)
T PLN03120 4 VRTVKVSNV--SLKAT--------ERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSV 72 (260)
T ss_pred CCEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceE
Confidence 468999999 88887 8999999999999999999765 47999999999999999995 99999999999
Q ss_pred EEEEcC
Q 006380 632 SAIFMK 637 (647)
Q Consensus 632 ~v~~~~ 637 (647)
.|.++.
T Consensus 73 ~Vt~a~ 78 (260)
T PLN03120 73 TITPAE 78 (260)
T ss_pred EEEecc
Confidence 999975
No 86
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.17 E-value=1.1e-10 Score=90.90 Aligned_cols=66 Identities=26% Similarity=0.449 Sum_probs=59.4
Q ss_pred EEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC----CCceEEEEeCCHHHHHHHHHHhcCcccCCeEEE
Q 006380 557 LLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR----SAGFVYLRFESTEAAASAQRAMHMRWFARRLIS 632 (647)
Q Consensus 557 l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~----~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l~ 632 (647)
|+|.|| |..++ .++|.++|+.||.|..|.+... ++|+|||+|.++++|.+|+..++|..|+|+.|.
T Consensus 1 v~i~nl--p~~~~--------~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNL--PPSTT--------EEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESS--TTT----------HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCC--CCCCC--------HHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999 98887 7999999999999999998765 379999999999999999999999999999985
No 87
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.16 E-value=9.3e-11 Score=107.21 Aligned_cols=81 Identities=19% Similarity=0.361 Sum_probs=74.7
Q ss_pred CCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeeccc
Q 006380 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVG 297 (647)
Q Consensus 218 ~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (647)
..-..||||+|++.++.+.|+.+|++||.|+++.|++|+.||+|+|||
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyG-------------------------------- 57 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYG-------------------------------- 57 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCcccccee--------------------------------
Confidence 345789999999999999999999999999999999999999999999
Q ss_pred ceEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCChh
Q 006380 298 MVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEA 354 (647)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~~ 354 (647)
||.|.+.++|..|++-..-.|.|+...++.+.-
T Consensus 58 ------------------------fVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 58 ------------------------FVTFRDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred ------------------------eEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence 999999999999998888889999888876543
No 88
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=5.3e-12 Score=110.01 Aligned_cols=79 Identities=29% Similarity=0.532 Sum_probs=74.4
Q ss_pred CCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeeccc
Q 006380 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVG 297 (647)
Q Consensus 218 ~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (647)
.++-.|||||||+..||.+|.-+|++||.|++|.+++|+.||.|+|||
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFa-------------------------------- 80 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFA-------------------------------- 80 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceE--------------------------------
Confidence 467899999999999999999999999999999999999999999999
Q ss_pred ceEeecCCccccccCCcccccceeeEEecCCcCHHHHH-HhcCccccCccccCCCC
Q 006380 298 MVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPS 352 (647)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al-~l~g~~~~g~~l~v~~~ 352 (647)
|+-|.+.-++..|+ .|||..|.|+.|+|...
T Consensus 81 ------------------------FLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 81 ------------------------FLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ------------------------EEEecCccceEEEEeccCCceecceeEEeeec
Confidence 99999999999999 69999999999999654
No 89
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.14 E-value=2.4e-10 Score=106.64 Aligned_cols=78 Identities=21% Similarity=0.221 Sum_probs=71.1
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecC
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 457 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~ 457 (647)
.+|+|+||++.+++++|+++|+.||.|.+|.|+.+. ...|+|||+|.+.++|..|| .|+|. .|.++.|.|..+.+
T Consensus 6 ~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa-~l~d~~I~It~~~~ 80 (243)
T PLN03121 6 YTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGA-TIVDQRVCITRWGQ 80 (243)
T ss_pred eEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCC-eeCCceEEEEeCcc
Confidence 799999999999999999999999999999999874 44689999999999999999 99997 79999999999876
Q ss_pred CCC
Q 006380 458 HVG 460 (647)
Q Consensus 458 ~~~ 460 (647)
...
T Consensus 81 y~~ 83 (243)
T PLN03121 81 YED 83 (243)
T ss_pred ccc
Confidence 443
No 90
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.13 E-value=2.4e-10 Score=115.76 Aligned_cols=161 Identities=29% Similarity=0.439 Sum_probs=120.0
Q ss_pred CceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecccce
Q 006380 220 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVGMV 299 (647)
Q Consensus 220 ~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (647)
..+|||+|||+.+|+++|.++|.+||.|..|.+..++.++.++|||
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~---------------------------------- 160 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFA---------------------------------- 160 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceE----------------------------------
Confidence 6999999999999999999999999999999999999999999999
Q ss_pred EeecCCccccccCCcccccceeeEEecCCcCHHHHHH-hcCccccCccccCCCChh----hhhhhcc--c--ccCCCCCC
Q 006380 300 FFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEA----EKNLVQS--N--TSAGGTAT 370 (647)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~-l~g~~~~g~~l~v~~~~~----~~~~~~~--~--~~~~~~~~ 370 (647)
||.|.+.++|..|+. ++|..+.|..|.|.+... ....... . ........
T Consensus 161 ----------------------~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (306)
T COG0724 161 ----------------------FVEFESEESAEKAIEELNGKELEGRPLRVQKAQPASQPRSELSNNLDASFAKKLSRGK 218 (306)
T ss_pred ----------------------EEEecCHHHHHHHHHHcCCCeECCceeEeeccccccccccccccccchhhhccccccc
Confidence 999999999999995 888999999999988542 1111100 0 00011111
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHH
Q 006380 371 GPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 436 (647)
Q Consensus 371 ~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al 436 (647)
.........+++.+++..++...+...|..+|.+..+.+.............++.+.....+..++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (306)
T COG0724 219 ALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESN 284 (306)
T ss_pred cccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhh
Confidence 222334689999999999999999999999999977777655433333334444444444444443
No 91
>PLN03213 repressor of silencing 3; Provisional
Probab=99.13 E-value=1.6e-10 Score=115.54 Aligned_cols=77 Identities=26% Similarity=0.473 Sum_probs=71.1
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCH--HHHHHHHHHHcCCeeeCCeEEEEEe
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQL--EHAKAAQSALNGKLEIVGRTLKVSS 454 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~--~~A~~Al~~l~g~~~~~g~~l~v~~ 454 (647)
..+|||+||++.+++++|...|..||.|..|.|++. +| +|||||+|.+. .++.+||..|+|. .+.|+.|+|..
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGA-EWKGR~LKVNK 84 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGC-VWKGGRLRLEK 84 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCC-eecCceeEEee
Confidence 379999999999999999999999999999999955 66 99999999987 7899999999997 79999999999
Q ss_pred ecCC
Q 006380 455 VTDH 458 (647)
Q Consensus 455 ~~~~ 458 (647)
|++.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 9864
No 92
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=9.8e-11 Score=96.13 Aligned_cols=79 Identities=28% Similarity=0.508 Sum_probs=73.7
Q ss_pred CCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeeccc
Q 006380 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVG 297 (647)
Q Consensus 218 ~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (647)
+.+.+||||||++-+||++|.++|+.+|.|..|.|=.|+.+..+.||+
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFC-------------------------------- 81 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFC-------------------------------- 81 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceE--------------------------------
Confidence 357899999999999999999999999999999999999999998988
Q ss_pred ceEeecCCccccccCCcccccceeeEEecCCcCHHHHHH-hcCccccCccccCCCC
Q 006380 298 MVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPS 352 (647)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~-l~g~~~~g~~l~v~~~ 352 (647)
||+|.+.++|..||. ++|..+..++|.+.+-
T Consensus 82 ------------------------FVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 82 ------------------------FVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred ------------------------EEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 999999999999995 9999999999998764
No 93
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=1.8e-10 Score=105.65 Aligned_cols=77 Identities=22% Similarity=0.424 Sum_probs=71.1
Q ss_pred CCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCHHHHHHHHHHhcCcccC
Q 006380 553 PSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAMHMRWFA 627 (647)
Q Consensus 553 ~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~~~A~~A~~~l~g~~~~ 627 (647)
.+.+|.|.|| ++.++ +++|.++|.+||.|..|.|..+ ++|||||.|.+.++|.+||..|||+=++
T Consensus 188 D~~tvRvtNL--sed~~--------E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd 257 (270)
T KOG0122|consen 188 DEATVRVTNL--SEDMR--------EDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYD 257 (270)
T ss_pred ccceeEEecC--ccccC--------hhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccc
Confidence 4567999999 88887 7999999999999999999655 6999999999999999999999999999
Q ss_pred CeEEEEEEcChh
Q 006380 628 RRLISAIFMKPE 639 (647)
Q Consensus 628 Gr~l~v~~~~~~ 639 (647)
.-.|.|+|..|.
T Consensus 258 ~LILrvEwskP~ 269 (270)
T KOG0122|consen 258 NLILRVEWSKPS 269 (270)
T ss_pred eEEEEEEecCCC
Confidence 999999999875
No 94
>smart00362 RRM_2 RNA recognition motif.
Probab=99.11 E-value=4.5e-10 Score=87.45 Aligned_cols=71 Identities=49% Similarity=0.861 Sum_probs=65.7
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEE
Q 006380 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 452 (647)
Q Consensus 379 ~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v 452 (647)
+|+|.|||..++.++|.++|..||.|..+.+..+. +.+.|+|||+|.+.++|..|+..+++. .+.|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~-~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGT-KLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCc-EECCEEEee
Confidence 48999999999999999999999999999998775 678899999999999999999999985 799999887
No 95
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.09 E-value=1e-09 Score=111.14 Aligned_cols=80 Identities=48% Similarity=0.811 Sum_probs=76.0
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
..+|||+|||+.+++++|.++|..||.|..|.|..+..++.++|||||+|.+.++|..|+..+++. .|.|+.|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~-~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGK-ELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCC-eECCceeEeeccc
Confidence 489999999999999999999999999999999999889999999999999999999999999985 7999999999976
Q ss_pred C
Q 006380 457 D 457 (647)
Q Consensus 457 ~ 457 (647)
.
T Consensus 194 ~ 194 (306)
T COG0724 194 P 194 (306)
T ss_pred c
Confidence 4
No 96
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.09 E-value=1.3e-10 Score=103.55 Aligned_cols=73 Identities=26% Similarity=0.456 Sum_probs=66.8
Q ss_pred ceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCHHHHHHHHHHhcCcccCCe
Q 006380 555 ECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAMHMRWFARR 629 (647)
Q Consensus 555 ~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr 629 (647)
..|.|-|| ..-|+ -++|..+|++||.|-.|.|+.+ ++|||||.|....+|..|+++|+|..|+|+
T Consensus 14 ~SLkVdNL--TyRTs--------pd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgR 83 (256)
T KOG4207|consen 14 TSLKVDNL--TYRTS--------PDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGR 83 (256)
T ss_pred eeEEecce--eccCC--------HHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccc
Confidence 36999999 66666 6999999999999999999754 699999999999999999999999999999
Q ss_pred EEEEEEcC
Q 006380 630 LISAIFMK 637 (647)
Q Consensus 630 ~l~v~~~~ 637 (647)
.|.|+++-
T Consensus 84 elrVq~ar 91 (256)
T KOG4207|consen 84 ELRVQMAR 91 (256)
T ss_pred eeeehhhh
Confidence 99999974
No 97
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=7e-11 Score=106.02 Aligned_cols=82 Identities=41% Similarity=0.686 Sum_probs=78.7
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecC
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 457 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~ 457 (647)
++|||++|...+++.-|...|-+||.|..|.++.|-.+++.+||+||+|.-.++|..||..||+. .+.|++|+|.++.+
T Consensus 11 rtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnes-EL~GrtirVN~AkP 89 (298)
T KOG0111|consen 11 RTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNES-ELFGRTIRVNLAKP 89 (298)
T ss_pred eeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchh-hhcceeEEEeecCC
Confidence 89999999999999999999999999999999999999999999999999999999999999997 89999999999998
Q ss_pred CCC
Q 006380 458 HVG 460 (647)
Q Consensus 458 ~~~ 460 (647)
...
T Consensus 90 ~ki 92 (298)
T KOG0111|consen 90 EKI 92 (298)
T ss_pred ccc
Confidence 643
No 98
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.06 E-value=3.7e-10 Score=116.74 Aligned_cols=81 Identities=40% Similarity=0.644 Sum_probs=77.6
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecC
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 457 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~ 457 (647)
..|||+|||+.+++++|..+|+..|.|.+++++.|+.+|..+||||++|.+.++|..|+..|||. .+.|++|+|.|+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~-~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGA-EFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCc-ccCCceEEeecccc
Confidence 78999999999999999999999999999999999999999999999999999999999999995 99999999999875
Q ss_pred CC
Q 006380 458 HV 459 (647)
Q Consensus 458 ~~ 459 (647)
..
T Consensus 98 ~~ 99 (435)
T KOG0108|consen 98 RK 99 (435)
T ss_pred cc
Confidence 43
No 99
>smart00360 RRM RNA recognition motif.
Probab=99.06 E-value=5.8e-10 Score=86.45 Aligned_cols=71 Identities=54% Similarity=0.803 Sum_probs=65.4
Q ss_pred EcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEE
Q 006380 382 VGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 453 (647)
Q Consensus 382 v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~ 453 (647)
|.|||..+++++|+++|+.||.|..+.+..+..++.++|+|||+|.+.++|..|+..+++. .+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~-~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGK-ELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCC-eeCCcEEEeC
Confidence 5789999999999999999999999999988777889999999999999999999999985 7999998873
No 100
>smart00362 RRM_2 RNA recognition motif.
Probab=99.06 E-value=9.5e-10 Score=85.58 Aligned_cols=69 Identities=29% Similarity=0.475 Sum_probs=62.5
Q ss_pred eEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCC---CceEEEEeCCHHHHHHHHHHhcCcccCCeEEE
Q 006380 556 CLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRS---AGFVYLRFESTEAAASAQRAMHMRWFARRLIS 632 (647)
Q Consensus 556 ~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~---~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l~ 632 (647)
+|+|.|| |..++ .++|.++|.+||.|..+.+.... .|+|||+|.+.++|..|+..|+|..|.|+.|.
T Consensus 1 ~v~i~~l--~~~~~--------~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~ 70 (72)
T smart00362 1 TLFVGNL--PPDVT--------EEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLR 70 (72)
T ss_pred CEEEcCC--CCcCC--------HHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEe
Confidence 4899999 88777 79999999999999999887553 79999999999999999999999999999998
Q ss_pred EE
Q 006380 633 AI 634 (647)
Q Consensus 633 v~ 634 (647)
|.
T Consensus 71 v~ 72 (72)
T smart00362 71 VE 72 (72)
T ss_pred eC
Confidence 73
No 101
>PLN03213 repressor of silencing 3; Provisional
Probab=99.03 E-value=1e-09 Score=109.87 Aligned_cols=81 Identities=12% Similarity=0.114 Sum_probs=71.7
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-CCceEEEEeCCH--HHHHHHHHHhcCcccC
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-SAGFVYLRFEST--EAAASAQRAMHMRWFA 627 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-~~g~afV~F~~~--~~A~~A~~~l~g~~~~ 627 (647)
+.....|||+|| +..++ ++||..+|..||.|..|.|++. ++|||||+|.+. .++.+||..|||..+.
T Consensus 7 ~~~gMRIYVGNL--SydVT--------EDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWK 76 (759)
T PLN03213 7 GGGGVRLHVGGL--GESVG--------RDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWK 76 (759)
T ss_pred CCcceEEEEeCC--CCCCC--------HHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeec
Confidence 344568999999 88887 7999999999999999988643 699999999987 7899999999999999
Q ss_pred CeEEEEEEcChhhh
Q 006380 628 RRLISAIFMKPEDY 641 (647)
Q Consensus 628 Gr~l~v~~~~~~~~ 641 (647)
|+.|+|.-+.|.-.
T Consensus 77 GR~LKVNKAKP~YL 90 (759)
T PLN03213 77 GGRLRLEKAKEHYL 90 (759)
T ss_pred CceeEEeeccHHHH
Confidence 99999999887643
No 102
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.01 E-value=2.4e-09 Score=83.78 Aligned_cols=74 Identities=50% Similarity=0.761 Sum_probs=67.4
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEe
Q 006380 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 454 (647)
Q Consensus 379 ~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~ 454 (647)
+|+|.|||..+++++|.++|..+|.|..+.+..+..+ ...|+|||+|.+.++|..|+..+++. .+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~-~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGK-ELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCC-eECCeEEEEeC
Confidence 4899999999999999999999999999999887633 67899999999999999999999996 69999999864
No 103
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.00 E-value=3.9e-09 Score=102.66 Aligned_cols=179 Identities=21% Similarity=0.237 Sum_probs=124.1
Q ss_pred CCceEEeccCCccCCHHHHHHHHHhcC----CceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeee
Q 006380 219 DQRTVFAYQMPLKATERDVYEFFSKAG----KVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVA 294 (647)
Q Consensus 219 ~~~~v~i~nlp~~~te~~l~~~f~~~G----~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (647)
..-.|.+++||+++|+.+|.++|.+-- -+..|..+.- -.|+..|-|
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdA----------------------------- 209 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDA----------------------------- 209 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccce-----------------------------
Confidence 356778899999999999999996322 2233333332 224555555
Q ss_pred cccceEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCChhhhhhhccc-----c-----c
Q 006380 295 EVGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSN-----T-----S 364 (647)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~~~~~~~~~~-----~-----~ 364 (647)
||.|..+++|+.||..|...+.-+.|.+-.+......+..+ + .
T Consensus 210 ---------------------------Fvlfa~ee~aq~aL~khrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~ 262 (508)
T KOG1365|consen 210 ---------------------------FVLFACEEDAQFALRKHRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLT 262 (508)
T ss_pred ---------------------------EEEecCHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCC
Confidence 99999999999999888777776666654332221111100 0 0
Q ss_pred CCCC-----CCCCCCCCCceEEEcCCCCCCCHHHHHHhhccCCC-eeE--EEeccCCCCCCeeeEEEEEeCCHHHHHHHH
Q 006380 365 AGGT-----ATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGP-VEL--VQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 436 (647)
Q Consensus 365 ~~~~-----~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~-i~~--v~i~~~~~~~~~~g~afV~f~~~~~A~~Al 436 (647)
.+.. .-.+......||.+++||+.++.++|..+|..|.. |.. |.|+.+. .|...|-|||+|.+.+.|..|.
T Consensus 263 sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaa 341 (508)
T KOG1365|consen 263 SPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAA 341 (508)
T ss_pred CCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHH
Confidence 0000 01111223679999999999999999999998853 322 6776665 7889999999999999999999
Q ss_pred HHHcCCeeeCCeEEEEEeec
Q 006380 437 SALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 437 ~~l~g~~~~~g~~l~v~~~~ 456 (647)
...++++ ...+.|.|-.+.
T Consensus 342 qk~hk~~-mk~RYiEvfp~S 360 (508)
T KOG1365|consen 342 QKCHKKL-MKSRYIEVFPCS 360 (508)
T ss_pred HHHHHhh-cccceEEEeecc
Confidence 9999864 568888887765
No 104
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.99 E-value=2.3e-09 Score=79.10 Aligned_cols=56 Identities=45% Similarity=0.713 Sum_probs=50.4
Q ss_pred HHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEee
Q 006380 394 LRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 455 (647)
Q Consensus 394 l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~ 455 (647)
|+++|++||.|..|.+.... +++|||+|.+.++|..|+..|||. .+.|++|.|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~-~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGR-QFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTS-EETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCC-EECCcEEEEEEC
Confidence 67899999999999997763 689999999999999999999996 799999999986
No 105
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.99 E-value=7.6e-10 Score=103.40 Aligned_cols=76 Identities=30% Similarity=0.468 Sum_probs=69.1
Q ss_pred CCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecccc
Q 006380 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVGM 298 (647)
Q Consensus 219 ~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (647)
...+|||+||++.+|+.+|.++|+.||.|..|.|+.+..+ .|||
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et---~gfA--------------------------------- 47 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEY---ACTA--------------------------------- 47 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCc---ceEE---------------------------------
Confidence 4579999999999999999999999999999999998543 4677
Q ss_pred eEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCCh
Q 006380 299 VFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSE 353 (647)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~ 353 (647)
||+|.+++++..|+.|+|..|.+..|.|.+..
T Consensus 48 -----------------------fVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 48 -----------------------YVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred -----------------------EEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 99999999999999999999999999987653
No 106
>smart00361 RRM_1 RNA recognition motif.
Probab=98.98 E-value=1.4e-09 Score=84.23 Aligned_cols=57 Identities=33% Similarity=0.521 Sum_probs=46.9
Q ss_pred HHHHHHHhhccCCeEEEE-E--e-----cCCCceEEEEeCCHHHHHHHHHHhcCcccCCeEEEEE
Q 006380 578 QGDVEEECSKYGRVKHIY-V--D-----KRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAI 634 (647)
Q Consensus 578 ~edl~~~f~~~G~v~~v~-l--~-----~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l~v~ 634 (647)
.+.+.++|.+||.|..|. | + +.++|+|||+|.+.++|.+|++.|||+.|.|+.|+++
T Consensus 6 ~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 6 EREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred HHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 344455555999999884 3 3 2358999999999999999999999999999999874
No 107
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.97 E-value=1e-09 Score=90.92 Aligned_cols=72 Identities=17% Similarity=0.319 Sum_probs=64.2
Q ss_pred ceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEe-----cCCCceEEEEeCCHHHHHHHHHHhcCcccCCe
Q 006380 555 ECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVD-----KRSAGFVYLRFESTEAAASAQRAMHMRWFARR 629 (647)
Q Consensus 555 ~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~-----~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr 629 (647)
=+|+|.++ -++++ +++|.+.|..||.|+.|.|- .-.+|+|+|+|++.++|.+|+..|||..|.|.
T Consensus 73 wIi~Vtgv--HeEat--------Eedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q 142 (170)
T KOG0130|consen 73 WIIFVTGV--HEEAT--------EEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQ 142 (170)
T ss_pred EEEEEecc--Ccchh--------HHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCC
Confidence 36999999 66666 89999999999999999873 22489999999999999999999999999999
Q ss_pred EEEEEEc
Q 006380 630 LISAIFM 636 (647)
Q Consensus 630 ~l~v~~~ 636 (647)
.|.|.|+
T Consensus 143 ~v~VDw~ 149 (170)
T KOG0130|consen 143 NVSVDWC 149 (170)
T ss_pred ceeEEEE
Confidence 9999885
No 108
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.96 E-value=1.5e-08 Score=105.76 Aligned_cols=201 Identities=14% Similarity=0.100 Sum_probs=131.2
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
.+.+-+.++++.+++.|++++|... .|..+.|..+...+...|.++|+|....++++|+ .-+. ..+-++.+.|..+.
T Consensus 311 ~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~-~rn~-~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 311 KYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAF-TRNP-SDDVNRPFQTGPPG 387 (944)
T ss_pred hheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHH-hcCc-hhhhhcceeecCCC
Confidence 4666778999999999999999864 2445556556556666899999999999999998 3344 34677888887766
Q ss_pred CCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCCCCCCC
Q 006380 457 DHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPA 536 (647)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (647)
+.....+..-.... ..+.....+ ......+ .+...++
T Consensus 388 ~~~~~~a~~~~~~~------------------------~~~~~~~~h---------------g~p~~~p----r~~~~~g 424 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGV------------------------PPPVIQNNH---------------GRPIAPP----RAMVRPG 424 (944)
T ss_pred ccccccCccccccC------------------------CCCcccccC---------------CCCCCCc----ccccCCC
Confidence 42211100000000 000000000 0000000 0000011
Q ss_pred CCCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEE-EEEecCC----CceEEEEeCCH
Q 006380 537 VTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKH-IYVDKRS----AGFVYLRFEST 611 (647)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~-v~l~~~~----~g~afV~F~~~ 611 (647)
.. .+.......||||..| |.+++ +.++.++|..--.|+. |.|...+ .+.|||.|..+
T Consensus 425 q~--------vp~P~~ag~~lyv~~l--P~~t~--------~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~ 486 (944)
T KOG4307|consen 425 QN--------VPFPGGAGGALYVFQL--PVMTP--------IVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHP 486 (944)
T ss_pred CC--------CCCCCCccceEEeccC--Ccccc--------ccchhhhhhhhhhhhheeEeccCCcccccchhhheeccc
Confidence 11 0112345679999999 99988 6788889987666654 7775433 56899999999
Q ss_pred HHHHHHHHHhcCcccCCeEEEEEEcChhhh
Q 006380 612 EAAASAQRAMHMRWFARRLISAIFMKPEDY 641 (647)
Q Consensus 612 ~~A~~A~~~l~g~~~~Gr~l~v~~~~~~~~ 641 (647)
+++.+|+..-+-++++-+.|.|..+++..+
T Consensus 487 ~a~~~a~~~~~k~y~G~r~irv~si~~~~m 516 (944)
T KOG4307|consen 487 TAPLTASSVKTKFYPGHRIIRVDSIADYAM 516 (944)
T ss_pred cccchhhhcccccccCceEEEeechhhHHH
Confidence 999999999999999999999999988877
No 109
>smart00361 RRM_1 RNA recognition motif.
Probab=98.95 E-value=2.7e-09 Score=82.58 Aligned_cols=61 Identities=28% Similarity=0.444 Sum_probs=53.2
Q ss_pred HHHHHHhhc----cCCCeeEEE-eccCCCC--CCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEE
Q 006380 391 ETQLRKLFE----PFGPVELVQ-LPLDIET--GQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 452 (647)
Q Consensus 391 e~~l~~~f~----~~g~i~~v~-i~~~~~~--~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v 452 (647)
+++|+++|+ +||.|..|. |+.++.+ +.++|+|||.|.+.++|.+|+..|||. .+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~-~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGR-YFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCC-EECCEEEEe
Confidence 567888887 999999985 6555545 889999999999999999999999997 799999976
No 110
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.95 E-value=4.5e-09 Score=82.20 Aligned_cols=70 Identities=29% Similarity=0.501 Sum_probs=63.7
Q ss_pred eEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCC----CceEEEEeCCHHHHHHHHHHhcCcccCCeEE
Q 006380 556 CLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRS----AGFVYLRFESTEAAASAQRAMHMRWFARRLI 631 (647)
Q Consensus 556 ~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~----~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l 631 (647)
+|+|.|| |..++ .++|.++|..||.|..+.+.... .|+|||+|.+.++|..|+..+++..|.|+.|
T Consensus 1 ~i~i~~l--~~~~~--------~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~ 70 (74)
T cd00590 1 TLFVGNL--PPDVT--------EEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPL 70 (74)
T ss_pred CEEEeCC--CCccC--------HHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 4889999 88777 79999999999999999887654 7999999999999999999999999999999
Q ss_pred EEEE
Q 006380 632 SAIF 635 (647)
Q Consensus 632 ~v~~ 635 (647)
.|.+
T Consensus 71 ~v~~ 74 (74)
T cd00590 71 RVEF 74 (74)
T ss_pred EEeC
Confidence 9875
No 111
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.95 E-value=9.4e-10 Score=103.13 Aligned_cols=92 Identities=30% Similarity=0.550 Sum_probs=78.2
Q ss_pred cccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCC------CceEEEEeCCHHHHHHHHHHh
Q 006380 548 EFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRS------AGFVYLRFESTEAAASAQRAM 621 (647)
Q Consensus 548 ~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~------~g~afV~F~~~~~A~~A~~~l 621 (647)
.+..-++++|++.||+.+.++. +++++.++++|.+||.|..|.|...+ .-.+||+|+.+++|.+|+-.|
T Consensus 275 ~Il~~ptkvlllrnmVg~gevd-----~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~Vdl 349 (378)
T KOG1996|consen 275 EILKCPTKVLLLRNMVGAGEVD-----EELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDL 349 (378)
T ss_pred HHHhcchHHHHhhhhcCccccc-----HHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhc
Confidence 3456788899999998877654 45678999999999999999874321 346799999999999999999
Q ss_pred cCcccCCeEEEEEEcChhhhhhc
Q 006380 622 HMRWFARRLISAIFMKPEDYEAK 644 (647)
Q Consensus 622 ~g~~~~Gr~l~v~~~~~~~~~~~ 644 (647)
||++|+|+++...|+..++|.++
T Consensus 350 nGRyFGGr~v~A~Fyn~ekfs~~ 372 (378)
T KOG1996|consen 350 NGRYFGGRVVSACFYNLEKFSNL 372 (378)
T ss_pred CCceecceeeeheeccHHhhhhh
Confidence 99999999999999999999764
No 112
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.94 E-value=1.8e-09 Score=114.23 Aligned_cols=75 Identities=20% Similarity=0.339 Sum_probs=67.5
Q ss_pred CCCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecc
Q 006380 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEV 296 (647)
Q Consensus 217 ~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (647)
..-++|||||.|+..+++.+|.++|+.||.|.+|.++.. +|||
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cA------------------------------- 460 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCA------------------------------- 460 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------Ccee-------------------------------
Confidence 346799999999999999999999999999999999764 5777
Q ss_pred cceEeecCCccccccCCcccccceeeEEecCCcCHHHHH-HhcCccccCccccCCCCh
Q 006380 297 GMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSE 353 (647)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al-~l~g~~~~g~~l~v~~~~ 353 (647)
||.+....+|.+|| +|+...+.+..|+|.|+.
T Consensus 461 -------------------------fI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 461 -------------------------FIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred -------------------------EEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 99999999999999 699999999999998874
No 113
>smart00360 RRM RNA recognition motif.
Probab=98.92 E-value=4.5e-09 Score=81.39 Aligned_cols=66 Identities=27% Similarity=0.470 Sum_probs=58.3
Q ss_pred ecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCHHHHHHHHHHhcCcccCCeEEEE
Q 006380 559 LKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAMHMRWFARRLISA 633 (647)
Q Consensus 559 v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l~v 633 (647)
|.|| |..++ .++|+++|.+||.|..|.+... ++|+|||+|.+.++|..|+..|+|..|.|+.|.|
T Consensus 1 i~~l--~~~~~--------~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNL--PPDVT--------EEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCC--CcccC--------HHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 5677 77766 7999999999999999988654 2689999999999999999999999999999987
Q ss_pred E
Q 006380 634 I 634 (647)
Q Consensus 634 ~ 634 (647)
+
T Consensus 71 ~ 71 (71)
T smart00360 71 K 71 (71)
T ss_pred C
Confidence 4
No 114
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.91 E-value=2.5e-09 Score=100.98 Aligned_cols=82 Identities=22% Similarity=0.386 Sum_probs=75.6
Q ss_pred CCCCCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeee
Q 006380 215 DPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVA 294 (647)
Q Consensus 215 ~~~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (647)
....+-+||||+-|+++++|..|...|+.||+|..|.|+.++.||.++|||
T Consensus 96 a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYA----------------------------- 146 (335)
T KOG0113|consen 96 AIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYA----------------------------- 146 (335)
T ss_pred ccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceE-----------------------------
Confidence 334678999999999999999999999999999999999999999999999
Q ss_pred cccceEeecCCccccccCCcccccceeeEEecCCcCHHHHHH-hcCccccCccccCCCC
Q 006380 295 EVGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPS 352 (647)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~-l~g~~~~g~~l~v~~~ 352 (647)
||+|.+..++.+|.+ .+|+.|.|+-|.|..-
T Consensus 147 ---------------------------FIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 147 ---------------------------FIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred ---------------------------EEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 999999999999994 8899999999888653
No 115
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.90 E-value=3.6e-08 Score=101.41 Aligned_cols=175 Identities=19% Similarity=0.256 Sum_probs=114.4
Q ss_pred CCCCCCCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeee
Q 006380 213 EADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFL 292 (647)
Q Consensus 213 ~~~~~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (647)
+....-.+++|+|-|||..+++++|..+|+.||.|.+|+....+ .|..
T Consensus 68 p~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~-----~~~~--------------------------- 115 (549)
T KOG4660|consen 68 PSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK-----RGIV--------------------------- 115 (549)
T ss_pred CCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc-----CceE---------------------------
Confidence 33445578999999999999999999999999999997765543 4555
Q ss_pred eecccceEeecCCccccccCCcccccceeeEEecCCcCHHHHH-HhcCccccCccccCCCChhhhhhhccccc-----CC
Q 006380 293 VAEVGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTS-----AG 366 (647)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al-~l~g~~~~g~~l~v~~~~~~~~~~~~~~~-----~~ 366 (647)
||+|.++-+|..|+ +|++..+.|+.+............+.+.. ..
T Consensus 116 -----------------------------~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 166 (549)
T KOG4660|consen 116 -----------------------------FVEFYDVRDAERALKALNRREIAGKRIKRPGGARRAMGLQSGTSFLNHFGS 166 (549)
T ss_pred -----------------------------EEEEeehHhHHHHHHHHHHHHhhhhhhcCCCcccccchhcccchhhhhccc
Confidence 99999999999999 59999999998883222211111111100 01
Q ss_pred -CCCCCCCCCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeee
Q 006380 367 -GTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEI 445 (647)
Q Consensus 367 -~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~ 445 (647)
...+.+.+-+...++.. |++.....-+...+.-+|.+.. .. ++.-.-.-|++|.+..++..++..+ | +.+
T Consensus 167 p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~-----~~~~~hq~~~~~~~~~s~a~~~~~~-G-~~~ 237 (549)
T KOG4660|consen 167 PLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RE-----TPLLNHQRFVEFADNRSYAFSEPRG-G-FLI 237 (549)
T ss_pred hhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-cc-----ccchhhhhhhhhccccchhhcccCC-c-eec
Confidence 11112222222333333 8888877656666677776654 22 2222336789999998886665433 5 457
Q ss_pred CCeEEEEEeecC
Q 006380 446 VGRTLKVSSVTD 457 (647)
Q Consensus 446 ~g~~l~v~~~~~ 457 (647)
.+....+++...
T Consensus 238 s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 238 SNSSGVITFSGP 249 (549)
T ss_pred CCCCceEEecCC
Confidence 777777777654
No 116
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=6e-10 Score=100.11 Aligned_cols=83 Identities=24% Similarity=0.480 Sum_probs=77.9
Q ss_pred CCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeeccc
Q 006380 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVG 297 (647)
Q Consensus 218 ~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (647)
..-++||||+|...+|+..|...|-+||.|..|+++.|.++.+++|||
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFg-------------------------------- 55 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFG-------------------------------- 55 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhccccccee--------------------------------
Confidence 356899999999999999999999999999999999999999999999
Q ss_pred ceEeecCCccccccCCcccccceeeEEecCCcCHHHHH-HhcCccccCccccCCCChhhh
Q 006380 298 MVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEK 356 (647)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al-~l~g~~~~g~~l~v~~~~~~~ 356 (647)
||+|.-.++|.+|+ .||+..|.|+.|.|+.+.+.+
T Consensus 56 ------------------------FVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~k 91 (298)
T KOG0111|consen 56 ------------------------FVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPEK 91 (298)
T ss_pred ------------------------EEEeeccchhHHHhhcCchhhhcceeEEEeecCCcc
Confidence 99999999999999 699999999999999886543
No 117
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.86 E-value=2.4e-10 Score=122.20 Aligned_cols=239 Identities=18% Similarity=0.169 Sum_probs=180.5
Q ss_pred CceEEeccCCccCCHH-HHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecccc
Q 006380 220 QRTVFAYQMPLKATER-DVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVGM 298 (647)
Q Consensus 220 ~~~v~i~nlp~~~te~-~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (647)
.....+.|+.+..... .+...|..+|.|..|.+......-....++
T Consensus 571 ~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~--------------------------------- 617 (881)
T KOG0128|consen 571 RREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQ--------------------------------- 617 (881)
T ss_pred hhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchh---------------------------------
Confidence 3455566666655444 678889999999998887632211112233
Q ss_pred eEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCChhhhhhhcccccCCCCCCCCCCCCCc
Q 006380 299 VFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDR 378 (647)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (647)
++++....++..|....|..+.+..+.|..+.+.......... ....-...
T Consensus 618 -----------------------~~~~s~~~~~esat~pa~~~~a~~~~av~~ad~~~~~~~~kvs------~n~~R~~~ 668 (881)
T KOG0128|consen 618 -----------------------QKVQSKHGSAESATVPAGGALANRSAAVGLADAEEKEENFKVS------PNEIRDLI 668 (881)
T ss_pred -----------------------hhhhccccchhhcccccccccCCccccCCCCCchhhhhccCcC------chHHHHHH
Confidence 8999999999999999999999999888877655432211110 00001136
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecCC
Q 006380 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDH 458 (647)
Q Consensus 379 ~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~~ 458 (647)
++||.||+..+.+.+|...|..+|.+..+++.-....+..+|+|||+|...+++.+|+....+. +.| +
T Consensus 669 ~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~--~~g--------K-- 736 (881)
T KOG0128|consen 669 KIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSC--FFG--------K-- 736 (881)
T ss_pred HHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhh--hhh--------h--
Confidence 8999999999999999999999999988887755557888999999999999999999655553 222 0
Q ss_pred CCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCCCCCCCCC
Q 006380 459 VGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPAVT 538 (647)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (647)
T Consensus 737 -------------------------------------------------------------------------------- 736 (881)
T KOG0128|consen 737 -------------------------------------------------------------------------------- 736 (881)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEe----cCCCceEEEEeCCHHHH
Q 006380 539 APVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVD----KRSAGFVYLRFESTEAA 614 (647)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~----~~~~g~afV~F~~~~~A 614 (647)
..|+|.|+ |..-| .+.++.+|..+|+++.+.++ ..++|.|||.|.+..+|
T Consensus 737 ----------------~~v~i~g~--pf~gt--------~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~ 790 (881)
T KOG0128|consen 737 ----------------ISVAISGP--PFQGT--------KEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADA 790 (881)
T ss_pred ----------------hhhheeCC--CCCCc--------hHHHHhhccccCCccccchhhhhccccccceeccCCCcchh
Confidence 15888998 88777 68899999999999998764 23689999999999999
Q ss_pred HHHHHHhcCcccCCeEEEEEEcCh
Q 006380 615 ASAQRAMHMRWFARRLISAIFMKP 638 (647)
Q Consensus 615 ~~A~~~l~g~~~~Gr~l~v~~~~~ 638 (647)
.++....++..+.-+.+.|..-.|
T Consensus 791 s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 791 SRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhcccchhhhhhhcCccccccCC
Confidence 999999988888877777776433
No 118
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.83 E-value=3.8e-09 Score=103.13 Aligned_cols=215 Identities=18% Similarity=0.232 Sum_probs=126.4
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCC---CCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEe
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIET---GQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 454 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~ 454 (647)
..|-|.||.+.++.++++.+|..+|.|..+.|+..... ......|||.|.+...+..|. .|.+.+ |-|+.|.|.+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntv-fvdraliv~p 85 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTV-FVDRALIVRP 85 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccce-eeeeeEEEEe
Confidence 58999999999999999999999999999988764322 344679999999999999997 777765 5555555544
Q ss_pred ecCCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCCCCC
Q 006380 455 VTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPV 534 (647)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (647)
+-+...... + ...-++.. ...++.+.+ +|.++....+. +....+.+..
T Consensus 86 ~~~~~~p~r---------------------~---af~~l~~~---navprll~p----dg~Lp~~~~lt-~~nh~p~ail 133 (479)
T KOG4676|consen 86 YGDEVIPDR---------------------F---AFVELADQ---NAVPRLLPP----DGVLPGDRPLT-KINHSPNAIL 133 (479)
T ss_pred cCCCCCccH---------------------H---HHHhcCcc---cccccccCC----CCccCCCCccc-cccCCcccee
Confidence 432111110 0 00000000 000000000 11111111110 0000000000
Q ss_pred CCCCCCCcccccc-cccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEe-cCCCceEEEEeCCHH
Q 006380 535 PAVTAPVIPNMAA-EFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVD-KRSAGFVYLRFESTE 612 (647)
Q Consensus 535 ~~~~~~~~~~~~~-~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~-~~~~g~afV~F~~~~ 612 (647)
-.|.+|.... .....-..+|+|.+| +..+. ..++.+.|..+|.|.+..+. ++-..+|.|+|....
T Consensus 134 ---ktP~Lp~~~~A~kleeirRt~~v~sl--~~~~~--------l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qt 200 (479)
T KOG4676|consen 134 ---KTPELPPQAAAKKLEEIRRTREVQSL--ISAAI--------LPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQT 200 (479)
T ss_pred ---cCCCCChHhhhhhhHHHHhhhhhhcc--hhhhc--------chhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhh
Confidence 0122222111 111222378999999 65543 57899999999999988774 333557789999999
Q ss_pred HHHHHHHHhcCcccCCeEEEEEEcChhh
Q 006380 613 AAASAQRAMHMRWFARRLISAIFMKPED 640 (647)
Q Consensus 613 ~A~~A~~~l~g~~~~Gr~l~v~~~~~~~ 640 (647)
....|+. ++|+.|.-+...+..+.|+.
T Consensus 201 s~~halr-~~gre~k~qhsr~ai~kP~k 227 (479)
T KOG4676|consen 201 SSKHALR-SHGRERKRQHSRRAIIKPHK 227 (479)
T ss_pred hHHHHHH-hcchhhhhhhhhhhhcCccc
Confidence 9888876 68988886555555555543
No 119
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=7.6e-09 Score=99.64 Aligned_cols=85 Identities=21% Similarity=0.332 Sum_probs=79.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEE
Q 006380 372 PYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLK 451 (647)
Q Consensus 372 ~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~ 451 (647)
...||...|||..|.+-++.++|.-+|+.||.|.+|.|+++..||.+-.||||+|.+.+++.+|...|++ +.|+++.|+
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdN-vLIDDrRIH 312 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDN-VLIDDRRIH 312 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcc-eeeccceEE
Confidence 3456779999999999999999999999999999999999999999999999999999999999999999 579999999
Q ss_pred EEeecC
Q 006380 452 VSSVTD 457 (647)
Q Consensus 452 v~~~~~ 457 (647)
|.|++.
T Consensus 313 VDFSQS 318 (479)
T KOG0415|consen 313 VDFSQS 318 (479)
T ss_pred eehhhh
Confidence 999874
No 120
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.80 E-value=5.8e-09 Score=107.95 Aligned_cols=79 Identities=30% Similarity=0.524 Sum_probs=75.3
Q ss_pred ceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecccceE
Q 006380 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVGMVF 300 (647)
Q Consensus 221 ~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (647)
..|||||||+.+++++|.++|+..|.|.+++++.|+.||.++|||
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~----------------------------------- 63 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFG----------------------------------- 63 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCcee-----------------------------------
Confidence 899999999999999999999999999999999999999999999
Q ss_pred eecCCccccccCCcccccceeeEEecCCcCHHHHHH-hcCccccCccccCCCChhh
Q 006380 301 FLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAE 355 (647)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~-l~g~~~~g~~l~v~~~~~~ 355 (647)
|++|.+.+.|..|+. |||..+.|+.|.|.++...
T Consensus 64 ---------------------f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 64 ---------------------FCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred ---------------------eEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 999999999999995 9999999999999876543
No 121
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.76 E-value=1.8e-08 Score=106.82 Aligned_cols=77 Identities=27% Similarity=0.499 Sum_probs=71.5
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecC
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 457 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~ 457 (647)
++|||++|+..+++.||..+|+.||.|.+|.++.. +|+|||...+-.+|.+||.+|++ +.+.++.|+|.|+..
T Consensus 422 rTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n-~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 422 RTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSN-VKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhc-ccccceeeEEeeecc
Confidence 89999999999999999999999999999998765 89999999999999999999998 689999999999986
Q ss_pred CCCC
Q 006380 458 HVGT 461 (647)
Q Consensus 458 ~~~~ 461 (647)
+...
T Consensus 495 ~G~k 498 (894)
T KOG0132|consen 495 KGPK 498 (894)
T ss_pred CCcc
Confidence 6443
No 122
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.75 E-value=1.3e-08 Score=100.67 Aligned_cols=180 Identities=27% Similarity=0.326 Sum_probs=139.7
Q ss_pred CCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeeccc
Q 006380 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVG 297 (647)
Q Consensus 218 ~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (647)
....++|++++...+.+..+..++..+|.+..+.+........++|++
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~-------------------------------- 133 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGL-------------------------------- 133 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccce--------------------------------
Confidence 357899999999999999999999999988888888877777888888
Q ss_pred ceEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCc-cccCccccCCCChhhhhhhcccccCCCCCCCCCCCC
Q 006380 298 MVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQ-LLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAI 376 (647)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~-~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (647)
++.|...+.+..||.+.+. .+.+..+......... ....+ ........+.
T Consensus 134 ------------------------s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~~~~-~~~~n----~~~~~~~~~s 184 (285)
T KOG4210|consen 134 ------------------------SVHFAGKSQFFAALEESGSKVLDGNKGEKDLNTRRG-LRPKN----KLSRLSSGPS 184 (285)
T ss_pred ------------------------eeccccHHHHHHHHHhhhccccccccccCccccccc-ccccc----hhcccccCcc
Confidence 9999999999999988876 4444443332221111 00000 1111112222
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
...++|.+|++.++.++|+..|..+|.|..+.++.+..++..+|||||.|.....+..++.. ... .+.+.++.|.+..
T Consensus 185 ~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTR-SIGGRPLRLEEDE 262 (285)
T ss_pred ccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccC-cccCcccccccCC
Confidence 34455999999999999999999999999999999999999999999999999999999966 564 6999999999987
Q ss_pred CCCC
Q 006380 457 DHVG 460 (647)
Q Consensus 457 ~~~~ 460 (647)
+...
T Consensus 263 ~~~~ 266 (285)
T KOG4210|consen 263 PRPK 266 (285)
T ss_pred CCcc
Confidence 6543
No 123
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.74 E-value=3.2e-08 Score=89.10 Aligned_cols=84 Identities=27% Similarity=0.460 Sum_probs=75.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhccC-CCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEE
Q 006380 374 GAIDRKLYVGNLHFNMTETQLRKLFEPF-GPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 452 (647)
Q Consensus 374 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~-g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v 452 (647)
......++|..+|..+.+..|...|.+| |.|..+++.++..||.++|||||+|.+.+.|.-|-+.||+. .+.|+.|.+
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNY-Ll~e~lL~c 124 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNY-LLMEHLLEC 124 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhh-hhhhheeee
Confidence 3445789999999999999999999988 88888999899999999999999999999999999999995 599999999
Q ss_pred EeecCC
Q 006380 453 SSVTDH 458 (647)
Q Consensus 453 ~~~~~~ 458 (647)
.+..+.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 998765
No 124
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.72 E-value=3.9e-08 Score=88.56 Aligned_cols=78 Identities=21% Similarity=0.363 Sum_probs=67.8
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhcc-CCeEEEEEe-----cCCCceEEEEeCCHHHHHHHHHHhcCcc
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKY-GRVKHIYVD-----KRSAGFVYLRFESTEAAASAQRAMHMRW 625 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~-G~v~~v~l~-----~~~~g~afV~F~~~~~A~~A~~~l~g~~ 625 (647)
....+++|..+ |..+. +..|...|.+| |.|..+.+. ++++|||||+|++.+.|.-|.+.||++.
T Consensus 47 ~~~g~~~~~~~--p~g~~--------e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYL 116 (214)
T KOG4208|consen 47 EIEGVVYVDHI--PHGFF--------ETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYL 116 (214)
T ss_pred CCccceeeccc--ccchh--------HHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhh
Confidence 34457899998 87665 66788888888 788888883 4589999999999999999999999999
Q ss_pred cCCeEEEEEEcChh
Q 006380 626 FARRLISAIFMKPE 639 (647)
Q Consensus 626 ~~Gr~l~v~~~~~~ 639 (647)
|.|+.|.|.|++|+
T Consensus 117 l~e~lL~c~vmppe 130 (214)
T KOG4208|consen 117 LMEHLLECHVMPPE 130 (214)
T ss_pred hhhheeeeEEeCch
Confidence 99999999999998
No 125
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.69 E-value=3e-09 Score=113.99 Aligned_cols=150 Identities=22% Similarity=0.325 Sum_probs=129.6
Q ss_pred CCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeeccc
Q 006380 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVG 297 (647)
Q Consensus 218 ~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (647)
++..++|+.||++.+.+.+|...|.++|.+..+++..-..++..+|+|
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~-------------------------------- 712 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKA-------------------------------- 712 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccce--------------------------------
Confidence 456789999999999999999999999998888887666778889988
Q ss_pred ceEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCChhhhhhhcccccCCCCCCCCCCCCC
Q 006380 298 MVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAID 377 (647)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (647)
|++|..++.+.+|+.+...-+.|+
T Consensus 713 ------------------------Y~~F~~~~~~~aaV~f~d~~~~gK-------------------------------- 736 (881)
T KOG0128|consen 713 ------------------------YVEFLKPEHAGAAVAFRDSCFFGK-------------------------------- 736 (881)
T ss_pred ------------------------eeEeecCCchhhhhhhhhhhhhhh--------------------------------
Confidence 999999999999998777666662
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecC
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 457 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~ 457 (647)
..|+|.|+|+..|.+.++.+|.++|.++++.++... .|+.+|.|||.|.+..+|.+++...+.. .+.-..+.|....+
T Consensus 737 ~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~-~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 737 ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVA-GKRENNGEVQVSNP 814 (881)
T ss_pred hhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhh-hhhhcCccccccCC
Confidence 579999999999999999999999999999988877 8999999999999999999998777763 45555555555443
No 126
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.61 E-value=1.6e-08 Score=91.21 Aligned_cols=144 Identities=28% Similarity=0.391 Sum_probs=116.6
Q ss_pred CCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeeccc
Q 006380 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVG 297 (647)
Q Consensus 218 ~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (647)
...++|||+||...+||+.|.++|-+.|+|..|.|..++.. ..+ ||
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~-~~k-Fa-------------------------------- 52 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQ-EQK-FA-------------------------------- 52 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccC-CCc-ee--------------------------------
Confidence 35689999999999999999999999999999999887653 223 55
Q ss_pred ceEeecCCccccccCCcccccceeeEEecCCcCHHHHHH-hcCccccCccccCCCChhhhhhhcccccCCCCCCCCCCCC
Q 006380 298 MVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAI 376 (647)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~-l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (647)
||.|.+......|+. +||..+.+..+.+++-
T Consensus 53 ------------------------~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r------------------------ 84 (267)
T KOG4454|consen 53 ------------------------YVFFPNENSVQLAGQLENGDDLEEDEEQRTLR------------------------ 84 (267)
T ss_pred ------------------------eeecccccchhhhhhhcccchhccchhhcccc------------------------
Confidence 999999999999995 8999999998887543
Q ss_pred CceEEEcC----CCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEE
Q 006380 377 DRKLYVGN----LHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTL 450 (647)
Q Consensus 377 ~~~l~v~n----Lp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l 450 (647)
.++ |...++++.+.+.|+..|++..+++..+. .|..+.++|+.+.-.-..-.++....+ +...-+++
T Consensus 85 -----~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~-l~~~~~~~ 155 (267)
T KOG4454|consen 85 -----CGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQG-LELFQKKV 155 (267)
T ss_pred -----cCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhhhhcc-cCcCCCCc
Confidence 222 56678999999999999999999999887 577788899988877777777755554 34433333
No 127
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.61 E-value=2.6e-08 Score=107.34 Aligned_cols=156 Identities=21% Similarity=0.331 Sum_probs=126.4
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
+.+||++||+..+++.+|+..|..+|.|..|.|-... -+...-|+||.|.+...+..|+..+.+.+ |..-.+.+.+..
T Consensus 372 trTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~-I~~g~~r~glG~ 449 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPL-IGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCc-cccCcccccccc
Confidence 6899999999999999999999999999999886654 33445599999999999999998888863 443344443321
Q ss_pred CCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCCCCCCC
Q 006380 457 DHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPA 536 (647)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (647)
.
T Consensus 450 ~------------------------------------------------------------------------------- 450 (975)
T KOG0112|consen 450 P------------------------------------------------------------------------------- 450 (975)
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHH
Q 006380 537 VTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAAS 616 (647)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~ 616 (647)
...+++.+.+.+| +.+.. ...|..+|..||.|..|.+.. +.-+|||.|.++..|..
T Consensus 451 -------------kst~ttr~~sggl--g~w~p--------~~~l~r~fd~fGpir~Idy~h-gq~yayi~yes~~~aq~ 506 (975)
T KOG0112|consen 451 -------------KSTPTTRLQSGGL--GPWSP--------VSRLNREFDRFGPIRIIDYRH-GQPYAYIQYESPPAAQA 506 (975)
T ss_pred -------------ccccceeeccCCC--CCCCh--------HHHHHHHhhccCcceeeeccc-CCcceeeecccCccchh
Confidence 0234557899998 66665 688999999999999998874 45699999999999999
Q ss_pred HHHHhcCcccCC--eEEEEEEcC
Q 006380 617 AQRAMHMRWFAR--RLISAIFMK 637 (647)
Q Consensus 617 A~~~l~g~~~~G--r~l~v~~~~ 637 (647)
|++.|-|..|+| +.|.|.|+.
T Consensus 507 a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 507 ATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred hHHHHhcCcCCCCCccccccccc
Confidence 999999999985 779998864
No 128
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=3e-07 Score=93.95 Aligned_cols=169 Identities=24% Similarity=0.280 Sum_probs=108.1
Q ss_pred CCCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecc
Q 006380 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEV 296 (647)
Q Consensus 217 ~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (647)
..-++.||||+||..++|+.|...|..||.+. |.-.. ...+.+++
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~---k~~~~~~~------------------------------- 300 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPG---KANSRGRA------------------------------- 300 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceE-eecCC---CccccccC-------------------------------
Confidence 45678999999999999999999999999732 11111 11122222
Q ss_pred cceEeecCCccccccCCcccccceeeEEecCCcCHHHHHH---h-cCc-cc--cCccccCCCChhhhhhhcccccCCCCC
Q 006380 297 GMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA---L-SGQ-LL--LGQPVMVKPSEAEKNLVQSNTSAGGTA 369 (647)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~---l-~g~-~~--~g~~l~v~~~~~~~~~~~~~~~~~~~~ 369 (647)
+.-...+|+|+.|..+......|. . .+. .| ....++.+..+...... ....- -..
T Consensus 301 ----------------ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~vss~~~k~k~VQIrPW~l-aDs~f-v~d 362 (520)
T KOG0129|consen 301 ----------------PPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFKVSSPTIKDKEVQIRPWVL-ADSDF-VLD 362 (520)
T ss_pred ----------------CCCCcccEEEEEecchHHHHHHHHHHhhcccceEEEEecCcccccceeEEeeEe-ccchh-hhc
Confidence 000111477999998888766552 1 111 11 11111111000000000 00000 001
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHhhc-cCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHH
Q 006380 370 TGPYGAIDRKLYVGNLHFNMTETQLRKLFE-PFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438 (647)
Q Consensus 370 ~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~-~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~ 438 (647)
......+.++|||++||..++.++|-.+|. -||.|..+-|-.|+.-.-.+|-|=|.|.+.....+||.+
T Consensus 363 ~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 363 HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 222233469999999999999999999999 899999999999977888999999999999999999855
No 129
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.54 E-value=8.5e-09 Score=101.50 Aligned_cols=157 Identities=20% Similarity=0.292 Sum_probs=125.5
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeE-EEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVEL-VQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~-v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
..||++||.+.++..+|..+|...-.-.. -.|+ ..||+||.+.+...|.+|++.++|++.+.|..+.|.+..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 46899999999999999999986421111 1122 268999999999999999999999999999999987754
Q ss_pred CCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCCCCCCC
Q 006380 457 DHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPA 536 (647)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (647)
++
T Consensus 75 ~k------------------------------------------------------------------------------ 76 (584)
T KOG2193|consen 75 PK------------------------------------------------------------------------------ 76 (584)
T ss_pred hH------------------------------------------------------------------------------
Confidence 20
Q ss_pred CCCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEec-CC-CceEEEEeCCHHHH
Q 006380 537 VTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDK-RS-AGFVYLRFESTEAA 614 (647)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~-~~-~g~afV~F~~~~~A 614 (647)
...++.+.|.|+ |..+. ++.|-.+...||+|+.|.... ++ .-..-|+|.+.+.+
T Consensus 77 --------------kqrsrk~Qirni--ppql~--------wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~ 132 (584)
T KOG2193|consen 77 --------------KQRSRKIQIRNI--PPQLQ--------WEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQH 132 (584)
T ss_pred --------------HHHhhhhhHhcC--CHHHH--------HHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHH
Confidence 122346899999 87665 788999999999999997632 22 23446899999999
Q ss_pred HHHHHHhcCcccCCeEEEEEEcChhhhhh
Q 006380 615 ASAQRAMHMRWFARRLISAIFMKPEDYEA 643 (647)
Q Consensus 615 ~~A~~~l~g~~~~Gr~l~v~~~~~~~~~~ 643 (647)
..||..|+|..|....++|.|.+.+.-..
T Consensus 133 ~~ai~kl~g~Q~en~~~k~~YiPdeq~~q 161 (584)
T KOG2193|consen 133 RQAIHKLNGPQLENQHLKVGYIPDEQNAQ 161 (584)
T ss_pred HHHHHhhcchHhhhhhhhcccCchhhhhc
Confidence 99999999999999999999999876443
No 130
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.51 E-value=1.1e-07 Score=102.58 Aligned_cols=161 Identities=22% Similarity=0.351 Sum_probs=127.1
Q ss_pred CCCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecc
Q 006380 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEV 296 (647)
Q Consensus 217 ~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (647)
...+++||+|||+..+++.+|+..|..+|.|..|.|-+-.. + .+.+
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~--~esa------------------------------- 414 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-K--TESA------------------------------- 414 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-C--cccc-------------------------------
Confidence 45689999999999999999999999999999998855421 1 2322
Q ss_pred cceEeecCCccccccCCcccccceeeEEecCCcCHHHHH-HhcCccccCccccCCCChhhhhhhcccccCCCCCCCCCCC
Q 006380 297 GMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGA 375 (647)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al-~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (647)
|+||.|.+..++..|. ++.+..|....+.+..... ...
T Consensus 415 -----------------------~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~------------------kst 453 (975)
T KOG0112|consen 415 -----------------------YAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQP------------------KST 453 (975)
T ss_pred -----------------------hhhhhhhccccCcccchhhcCCccccCccccccccc------------------ccc
Confidence 4499999999998887 5777776554444433211 112
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCC--eEEEEE
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG--RTLKVS 453 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g--~~l~v~ 453 (647)
+++.+++++|+..+....|..+|..||.|..|.+-. ..-||||+|.+...|+.|+..|-| +.|+| +.+.|.
T Consensus 454 ~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~~~rg-ap~G~P~~r~rvd 526 (975)
T KOG0112|consen 454 PTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATHDMRG-APLGGPPRRLRVD 526 (975)
T ss_pred cceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhhHHHHhc-CcCCCCCcccccc
Confidence 348999999999999999999999999998877733 245999999999999999999999 46765 678999
Q ss_pred eecCCC
Q 006380 454 SVTDHV 459 (647)
Q Consensus 454 ~~~~~~ 459 (647)
|+.+..
T Consensus 527 la~~~~ 532 (975)
T KOG0112|consen 527 LASPPG 532 (975)
T ss_pred cccCCC
Confidence 988654
No 131
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.51 E-value=5.5e-07 Score=87.30 Aligned_cols=80 Identities=29% Similarity=0.410 Sum_probs=70.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEE
Q 006380 372 PYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLK 451 (647)
Q Consensus 372 ~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~ 451 (647)
+.+....+|||++|-..+++.+|++.|.+||.|.+|.++.. ++.|||+|.+.+.|..|...+-+.+.|+|..|.
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 33344589999999889999999999999999999999765 579999999999999998777667789999999
Q ss_pred EEeecC
Q 006380 452 VSSVTD 457 (647)
Q Consensus 452 v~~~~~ 457 (647)
|.|..+
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 999876
No 132
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=2.5e-06 Score=87.36 Aligned_cols=161 Identities=24% Similarity=0.251 Sum_probs=107.5
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCC---CCCCeee---EEEEEeCCHHHHHHHHHHHcCCeeeCCeEE
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDI---ETGQCKG---FGFVQFAQLEHAKAAQSALNGKLEIVGRTL 450 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~---~~~~~~g---~afV~f~~~~~A~~Al~~l~g~~~~~g~~l 450 (647)
++.|||++||+.++|+.|...|..||.+. |.++... ..-..+| |+|+.|.++..+...|.++.- .-.+.-+
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~--~~~~~yf 335 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE--GEGNYYF 335 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh--cccceEE
Confidence 68999999999999999999999999873 5554211 1122356 999999999999887766543 1222333
Q ss_pred EEEeecCCCC-CCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCC
Q 006380 451 KVSSVTDHVG-TQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQ 529 (647)
Q Consensus 451 ~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (647)
.|.-...+.. .+.. +|......
T Consensus 336 ~vss~~~k~k~VQIr----------------------------------------------------PW~laDs~----- 358 (520)
T KOG0129|consen 336 KVSSPTIKDKEVQIR----------------------------------------------------PWVLADSD----- 358 (520)
T ss_pred EEecCcccccceeEE----------------------------------------------------eeEeccch-----
Confidence 3433221111 0000 00000000
Q ss_pred CCCCCCCCCCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhh-ccCCeEEEEEecC-----CCce
Q 006380 530 PAVPVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECS-KYGRVKHIYVDKR-----SAGF 603 (647)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~-~~G~v~~v~l~~~-----~~g~ 603 (647)
.... ... .-.|.++|||++| |-.++ .++|..+|+ .||.|..+-|+.+ ++|-
T Consensus 359 --fv~d---------~sq--~lDprrTVFVGgv--prpl~--------A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGa 415 (520)
T KOG0129|consen 359 --FVLD---------HNQ--PIDPRRTVFVGGL--PRPLT--------AEELAMIMEDLFGGVLYVGIDTDPKLKYPKGA 415 (520)
T ss_pred --hhhc---------cCc--ccCccceEEecCC--CCcch--------HHHHHHHHHHhcCceEEEEeccCcccCCCCCc
Confidence 0000 000 1256789999999 88887 688999998 7999999999766 6999
Q ss_pred EEEEeCCHHHHHHHHHH
Q 006380 604 VYLRFESTEAAASAQRA 620 (647)
Q Consensus 604 afV~F~~~~~A~~A~~~ 620 (647)
|=|.|.+...=.+||.+
T Consensus 416 GRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 416 GRVTFSNQQAYIKAISA 432 (520)
T ss_pred ceeeecccHHHHHHHhh
Confidence 99999999998998763
No 133
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=2e-07 Score=90.04 Aligned_cols=77 Identities=22% Similarity=0.355 Sum_probs=67.7
Q ss_pred cCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCHHHHHHHHHHhcCc
Q 006380 550 IGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAMHMR 624 (647)
Q Consensus 550 ~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~~~A~~A~~~l~g~ 624 (647)
..+|.++|||--| ...++ .+||.-+|+.||.|.+|.|.++ +-.+|||+|.+.+++.+|.-.|++.
T Consensus 235 ~~PPeNVLFVCKL--NPVTt--------DeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNv 304 (479)
T KOG0415|consen 235 VKPPENVLFVCKL--NPVTT--------DEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNV 304 (479)
T ss_pred cCCCcceEEEEec--CCccc--------ccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcce
Confidence 4678889999999 55555 3899999999999999988654 4569999999999999999999999
Q ss_pred ccCCeEEEEEEc
Q 006380 625 WFARRLISAIFM 636 (647)
Q Consensus 625 ~~~Gr~l~v~~~ 636 (647)
.|+.+.|+|.|.
T Consensus 305 LIDDrRIHVDFS 316 (479)
T KOG0415|consen 305 LIDDRRIHVDFS 316 (479)
T ss_pred eeccceEEeehh
Confidence 999999999983
No 134
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.47 E-value=1.2e-07 Score=97.66 Aligned_cols=72 Identities=29% Similarity=0.457 Sum_probs=64.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEE
Q 006380 374 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLK 451 (647)
Q Consensus 374 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~ 451 (647)
+....+|+|-|||..+++++|+.+|+.||+|..|+. +....|++||+|.++-+|+.||++|++. .|.|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~-~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRR-EIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHH-Hhhhhhhc
Confidence 334589999999999999999999999999999877 4445899999999999999999999997 79998888
No 135
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.37 E-value=1.5e-06 Score=91.63 Aligned_cols=89 Identities=26% Similarity=0.351 Sum_probs=77.0
Q ss_pred CCCCCCCCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCC---CCCCeeeEEEEEeCCHHHHHHHHHHHcCCee
Q 006380 368 TATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDI---ETGQCKGFGFVQFAQLEHAKAAQSALNGKLE 444 (647)
Q Consensus 368 ~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~---~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~ 444 (647)
++...+.|.++.|||+||++.+++..|...|..||+|..|+|+... ......-++||.|.+-.+|..|++.|+|. .
T Consensus 165 gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~-i 243 (877)
T KOG0151|consen 165 GSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGI-I 243 (877)
T ss_pred CcCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcce-e
Confidence 4445567788999999999999999999999999999999998655 22334668999999999999999999995 7
Q ss_pred eCCeEEEEEeecC
Q 006380 445 IVGRTLKVSSVTD 457 (647)
Q Consensus 445 ~~g~~l~v~~~~~ 457 (647)
|.++.+++.|++.
T Consensus 244 v~~~e~K~gWgk~ 256 (877)
T KOG0151|consen 244 VMEYEMKLGWGKA 256 (877)
T ss_pred eeeeeeeeccccc
Confidence 9999999999854
No 136
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.33 E-value=1.6e-06 Score=82.66 Aligned_cols=81 Identities=27% Similarity=0.493 Sum_probs=75.3
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecC
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 457 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~ 457 (647)
..|+|.|||+.++.+||+++|..||.+..+.|-++. .|.+.|.|-|.|...++|..|++.+++ |.++|..|++..+.+
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~g-v~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNG-VALDGRPMKIEIISS 161 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcC-cccCCceeeeEEecC
Confidence 789999999999999999999999999999998887 899999999999999999999999999 799999999988875
Q ss_pred CCC
Q 006380 458 HVG 460 (647)
Q Consensus 458 ~~~ 460 (647)
...
T Consensus 162 ~~~ 164 (243)
T KOG0533|consen 162 PSQ 164 (243)
T ss_pred ccc
Confidence 443
No 137
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.33 E-value=3e-06 Score=65.00 Aligned_cols=72 Identities=25% Similarity=0.308 Sum_probs=51.6
Q ss_pred eEEecCcCCCCCCCCchhhhhhHHHHHHHhhccC-CeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCCeEEEEE
Q 006380 556 CLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYG-RVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAI 634 (647)
Q Consensus 556 ~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G-~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l~v~ 634 (647)
.|+|.|| |.... ...|...|++++..+| .|..|. .+.|+|.|.+++.|.+|.+.|+|..+.|+.|.|+
T Consensus 4 ~L~V~NL--P~~~d----~~~I~~RL~qLsdNCGGkVl~v~-----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 4 LLYVSNL--PTNKD----PSSIKNRLRQLSDNCGGKVLSVS-----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEES----TTS-----HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred EEEEecC--CCCCC----HHHHHHHHHHHhhccCCEEEEEe-----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 6999999 88653 4445678999999885 677762 4789999999999999999999999999999999
Q ss_pred EcCh
Q 006380 635 FMKP 638 (647)
Q Consensus 635 ~~~~ 638 (647)
|.+.
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 9754
No 138
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.32 E-value=1.3e-07 Score=92.60 Aligned_cols=198 Identities=16% Similarity=0.140 Sum_probs=128.6
Q ss_pred CceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCC---CCccceeeeeeeccCccccccccc----cCceeeeeee
Q 006380 220 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNS---RRSKGVGNAIMMRDDGNTLHSCLI----NSCCVIKFFL 292 (647)
Q Consensus 220 ~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t---~~s~G~~fv~~~~~~~~~~~~~~~----~~~~~~~~~~ 292 (647)
...|.|.||.+++|.+++..+|...|.|..+.|+..... .-..-.+||.|........+.-+. -++.++...+
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 347899999999999999999999999999999874321 233456788876655543322211 1222211111
Q ss_pred eecccceEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCChhhhhhhcccccCCCCCCCC
Q 006380 293 VAEVGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGP 372 (647)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~ 372 (647)
. ...+..-+||+.|.+....+-+|..+|..+...+|.+....+......+.. .+..+..-
T Consensus 87 ~-------------------~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~L-p~~~~A~k 146 (479)
T KOG4676|consen 87 G-------------------DEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPEL-PPQAAAKK 146 (479)
T ss_pred C-------------------CCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCC-ChHhhhhh
Confidence 1 111234468999999999988888888766666664333222222111111 01111111
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCC
Q 006380 373 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK 442 (647)
Q Consensus 373 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~ 442 (647)
.....++|+|.+|+..+...++.+.|..+|.|....+. .+...-+|.|+|........|| .++|.
T Consensus 147 leeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~hal-r~~gr 211 (479)
T KOG4676|consen 147 LEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHAL-RSHGR 211 (479)
T ss_pred hHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHH-Hhcch
Confidence 11224789999999999999999999999998776653 2334557889999999999998 55554
No 139
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.25 E-value=3e-06 Score=82.27 Aligned_cols=75 Identities=16% Similarity=0.281 Sum_probs=63.3
Q ss_pred CCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHh-cCcccCCeEE
Q 006380 553 PSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAM-HMRWFARRLI 631 (647)
Q Consensus 553 ~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l-~g~~~~Gr~l 631 (647)
...+|||++| -..++ +.+|.+.|.+||.|.+|.+.. .++||||+|.+.+.|..|...+ +...++|..|
T Consensus 227 ~I~tLyIg~l--~d~v~--------e~dIrdhFyqyGeirsi~~~~-~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 227 SIKTLYIGGL--NDEVL--------EQDIRDHFYQYGEIRSIRILP-RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred ceeEEEeccc--ccchh--------HHHHHHHHhhcCCeeeEEeec-ccccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 3467999999 33444 799999999999999998863 5789999999999999988765 5556799999
Q ss_pred EEEEcCh
Q 006380 632 SAIFMKP 638 (647)
Q Consensus 632 ~v~~~~~ 638 (647)
+|.|-.+
T Consensus 296 ~i~Wg~~ 302 (377)
T KOG0153|consen 296 KIKWGRP 302 (377)
T ss_pred EEEeCCC
Confidence 9999887
No 140
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.25 E-value=1.1e-06 Score=87.07 Aligned_cols=172 Identities=18% Similarity=0.163 Sum_probs=127.9
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
..++|++++-..+.+.++..++..+|.+....+........++|++++.|...+.+..|| ++.+...+.+..+......
T Consensus 88 ~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l-~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 88 SSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAAL-EESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred cccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHH-HhhhccccccccccCcccc
Confidence 478999999999999888889999998877777666668889999999999999999999 5555323455444433322
Q ss_pred CCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCCCCCCC
Q 006380 457 DHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPA 536 (647)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (647)
... ... ......+
T Consensus 167 ~~~---~~~----------------------------------------------------~n~~~~~------------ 179 (285)
T KOG4210|consen 167 RRG---LRP----------------------------------------------------KNKLSRL------------ 179 (285)
T ss_pred ccc---ccc----------------------------------------------------cchhccc------------
Confidence 100 000 0000000
Q ss_pred CCCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCH
Q 006380 537 VTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFEST 611 (647)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~ 611 (647)
...++...++|.|+ ++.++ .++|...|..+|.|..+.++.. ..|+|||.|.+.
T Consensus 180 ------------~~~~s~~~~~~~~~--~f~~~--------~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~ 237 (285)
T KOG4210|consen 180 ------------SSGPSDTIFFVGEL--DFSLT--------RDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAG 237 (285)
T ss_pred ------------ccCccccceeeccc--ccccc--------hHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhc
Confidence 01233344559999 88887 6889999999999999999643 488999999999
Q ss_pred HHHHHHHHHhcCcccCCeEEEEEEcChh
Q 006380 612 EAAASAQRAMHMRWFARRLISAIFMKPE 639 (647)
Q Consensus 612 ~~A~~A~~~l~g~~~~Gr~l~v~~~~~~ 639 (647)
..+..|+.. +...+.|+++.|.+-.+.
T Consensus 238 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 238 NSKKLALND-QTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred hhHHHHhhc-ccCcccCcccccccCCCC
Confidence 999999998 999999999999987665
No 141
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.24 E-value=2.2e-06 Score=87.86 Aligned_cols=82 Identities=23% Similarity=0.411 Sum_probs=75.9
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
.+.|||.+|...+-..+|+.+|++||.|+-..|+.+..+.-.+.|+||.+.+..+|.+||+.||.+ .+.|+.|.|..++
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrT-ELHGrmISVEkaK 483 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRT-ELHGRMISVEKAK 483 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhh-hhcceeeeeeecc
Confidence 689999999999999999999999999999999988777777899999999999999999999996 8999999999987
Q ss_pred CCC
Q 006380 457 DHV 459 (647)
Q Consensus 457 ~~~ 459 (647)
...
T Consensus 484 NEp 486 (940)
T KOG4661|consen 484 NEP 486 (940)
T ss_pred cCc
Confidence 543
No 142
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.24 E-value=7.2e-06 Score=66.59 Aligned_cols=78 Identities=22% Similarity=0.363 Sum_probs=68.2
Q ss_pred ceEEEcCCCCCCCHHHHHHhhcc--CCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeC----CeEEE
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEP--FGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIV----GRTLK 451 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~--~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~----g~~l~ 451 (647)
++|+|+|||...+.++|.+++.. .|....+.++-|..++...|||||-|.+++.|......++|. .+. .+.+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~-~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGK-KWPNFNSKKVCE 80 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCC-ccccCCCCcEEE
Confidence 68999999999999999988864 367778899999889999999999999999999999999996 453 56788
Q ss_pred EEeec
Q 006380 452 VSSVT 456 (647)
Q Consensus 452 v~~~~ 456 (647)
|.||.
T Consensus 81 i~yAr 85 (97)
T PF04059_consen 81 ISYAR 85 (97)
T ss_pred EehhH
Confidence 88886
No 143
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.21 E-value=6.2e-07 Score=81.22 Aligned_cols=78 Identities=27% Similarity=0.339 Sum_probs=70.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEee
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 455 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~ 455 (647)
..++|||.||-..++++-|.++|-..|+|..|.|+.+. .+..+ ||||.|.+.....-|++.+|| +.+.+..+.|.+-
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng-~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENG-DDLEEDEEQRTLR 84 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhccc-chhccchhhcccc
Confidence 35899999999999999999999999999999998876 66667 999999999999999999999 6899998888775
Q ss_pred c
Q 006380 456 T 456 (647)
Q Consensus 456 ~ 456 (647)
.
T Consensus 85 ~ 85 (267)
T KOG4454|consen 85 C 85 (267)
T ss_pred c
Confidence 4
No 144
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.11 E-value=3.2e-06 Score=78.58 Aligned_cols=140 Identities=21% Similarity=0.256 Sum_probs=96.5
Q ss_pred ccccccCCcccccceeeEEecCCcCHHHHH-HhcCccccCccccCCCChhhhhhhcccccCCCCCCCCCCCCCceEEEcC
Q 006380 306 ETYTVLDPATVLVSYRYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGN 384 (647)
Q Consensus 306 ~~~~~~~~~~~~~~~afv~f~~~~~a~~al-~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n 384 (647)
.+..+.+-.+.+..++|+.|....+-..+. .-++..+.-..|++.-... ... ...... .....+||.+.
T Consensus 128 ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gts--wed------Psl~ew--~~~DfRIfcgd 197 (290)
T KOG0226|consen 128 KTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTS--WED------PSLAEW--DEDDFRIFCGD 197 (290)
T ss_pred hhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccccc--cCC------cccccC--ccccceeeccc
Confidence 333444445555667777777665555554 2344444333332211100 000 000001 11237899999
Q ss_pred CCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 385 LHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 385 Lp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
|...++.+.|-..|.+|-......+++++.||+++||+||-|.+..++..|+..|+|+ .++.+.|++....
T Consensus 198 lgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gk-yVgsrpiklRkS~ 268 (290)
T KOG0226|consen 198 LGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGK-YVGSRPIKLRKSE 268 (290)
T ss_pred ccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccc-ccccchhHhhhhh
Confidence 9999999999999999988888899999999999999999999999999999999998 6898988875543
No 145
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.05 E-value=1.4e-05 Score=76.29 Aligned_cols=78 Identities=18% Similarity=0.230 Sum_probs=68.6
Q ss_pred CceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC----CCceEEEEeCCHHHHHHHHHHhcCcccCCe
Q 006380 554 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR----SAGFVYLRFESTEAAASAQRAMHMRWFARR 629 (647)
Q Consensus 554 ~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~----~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr 629 (647)
...|+|.|| |..+. .+||+++|..||.++.+.|..+ +.|+|-|.|...++|..|++.+||..++|+
T Consensus 83 ~~~v~v~NL--~~~V~--------~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~ 152 (243)
T KOG0533|consen 83 STKVNVSNL--PYGVI--------DADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGR 152 (243)
T ss_pred cceeeeecC--CcCcc--------hHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCc
Confidence 356999999 88887 6999999999999998888543 578999999999999999999999999999
Q ss_pred EEEEEEcChhhh
Q 006380 630 LISAIFMKPEDY 641 (647)
Q Consensus 630 ~l~v~~~~~~~~ 641 (647)
.|++..+.....
T Consensus 153 ~mk~~~i~~~~~ 164 (243)
T KOG0533|consen 153 PMKIEIISSPSQ 164 (243)
T ss_pred eeeeEEecCccc
Confidence 999998776543
No 146
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=98.03 E-value=2.8e-06 Score=79.47 Aligned_cols=68 Identities=32% Similarity=0.524 Sum_probs=59.5
Q ss_pred hhHHHHHHHhh-ccCCeEEEEEecC----CCceEEEEeCCHHHHHHHHHHhcCcccCCeEEEEEEcChhhhhh
Q 006380 576 EIQGDVEEECS-KYGRVKHIYVDKR----SAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEA 643 (647)
Q Consensus 576 ~i~edl~~~f~-~~G~v~~v~l~~~----~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l~v~~~~~~~~~~ 643 (647)
+..+||..+|. +||.|+.+.|-.+ -.|-+||.|...++|.+|+..|||++|.|++|.+.|++-..|..
T Consensus 80 efyEd~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~re 152 (260)
T KOG2202|consen 80 EFYEDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFRE 152 (260)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchhh
Confidence 33578888888 9999999977543 27889999999999999999999999999999999999887764
No 147
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.01 E-value=5.6e-06 Score=84.93 Aligned_cols=80 Identities=19% Similarity=0.309 Sum_probs=70.1
Q ss_pred CCCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecc
Q 006380 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEV 296 (647)
Q Consensus 217 ~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (647)
..-.+.|||.+|+..+-..+|+.+|++||.|+.++|+++..+.-.+-||
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYG------------------------------- 450 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYG------------------------------- 450 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeE-------------------------------
Confidence 3456899999999999999999999999999999999987765555566
Q ss_pred cceEeecCCccccccCCcccccceeeEEecCCcCHHHHHH-hcCccccCccccCCCC
Q 006380 297 GMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPS 352 (647)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~-l~g~~~~g~~l~v~~~ 352 (647)
||.+.+..+|.+|+. |+...|.|+.|.|..+
T Consensus 451 -------------------------fVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 451 -------------------------FVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred -------------------------EEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 999999999999995 9999999999988643
No 148
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.00 E-value=9.5e-06 Score=77.71 Aligned_cols=78 Identities=33% Similarity=0.556 Sum_probs=73.1
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecC
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 457 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~ 457 (647)
..+||+|+.+.++.++|...|+.||.|..|.|+.+...+.++||+||+|.+.+.+..||. |++. .|.|..+.|.+..-
T Consensus 102 ~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs-~i~~~~i~vt~~r~ 179 (231)
T KOG4209|consen 102 PSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGS-EIPGPAIEVTLKRT 179 (231)
T ss_pred ceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCc-ccccccceeeeeee
Confidence 799999999999999999999999999999999999888899999999999999999995 9997 79999999988763
No 149
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.93 E-value=7.5e-06 Score=78.42 Aligned_cols=82 Identities=23% Similarity=0.312 Sum_probs=76.2
Q ss_pred CCCCCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeee
Q 006380 215 DPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVA 294 (647)
Q Consensus 215 ~~~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (647)
..+.+...|||+|+.+.+|...+...|..||.|..|.|.+|+.+|.++||+
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~----------------------------- 146 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFA----------------------------- 146 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeE-----------------------------
Confidence 345678899999999999999999999999999999999999999999999
Q ss_pred cccceEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCC
Q 006380 295 EVGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPS 352 (647)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~ 352 (647)
||+|.+.+.+..++.|+|..+.|..+.|.+.
T Consensus 147 ---------------------------yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 147 ---------------------------YVEFSSYELVEEAYKLDGSEIPGPAIEVTLK 177 (231)
T ss_pred ---------------------------EEecccHhhhHHHhhcCCcccccccceeeee
Confidence 9999999999999999999999999988654
No 150
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.91 E-value=1.4e-05 Score=82.61 Aligned_cols=78 Identities=31% Similarity=0.482 Sum_probs=65.0
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecC
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 457 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~ 457 (647)
..|||.|||..+++.+|.++|..||.|+...|..-...+....||||+|.+...++.||++- .+.|++++|.|.--..
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As--p~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS--PLEIGGRKLNVEEKRP 366 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC--ccccCCeeEEEEeccc
Confidence 45999999999999999999999999998776543323444589999999999999999554 4789999999976543
No 151
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.86 E-value=4.6e-05 Score=63.57 Aligned_cols=75 Identities=19% Similarity=0.281 Sum_probs=48.6
Q ss_pred ceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcC-----cccCCe
Q 006380 555 ECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHM-----RWFARR 629 (647)
Q Consensus 555 ~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g-----~~~~Gr 629 (647)
.+|+|.++ +..++ .++|+++|+.||.|.+|.+.. +...|||.|.+++.|.+|+..+.- ..+.|.
T Consensus 2 ~il~~~g~--~~~~~--------re~iK~~f~~~g~V~yVD~~~-G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~ 70 (105)
T PF08777_consen 2 CILKFSGL--GEPTS--------REDIKEAFSQFGEVAYVDFSR-GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGK 70 (105)
T ss_dssp -EEEEEE----SS----------HHHHHHHT-SS--EEEEE--T-T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSS
T ss_pred eEEEEecC--CCCcC--------HHHHHHHHHhcCCcceEEecC-CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCc
Confidence 36889988 55554 799999999999999999874 566899999999999999988854 478899
Q ss_pred EEEEEEcChhh
Q 006380 630 LISAIFMKPED 640 (647)
Q Consensus 630 ~l~v~~~~~~~ 640 (647)
.+++.....++
T Consensus 71 ~~~~~vLeGee 81 (105)
T PF08777_consen 71 EVTLEVLEGEE 81 (105)
T ss_dssp SEEEE---HHH
T ss_pred eEEEEECCCHH
Confidence 99998876554
No 152
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.79 E-value=0.00016 Score=62.65 Aligned_cols=85 Identities=16% Similarity=0.312 Sum_probs=58.7
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCCeE
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRL 630 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~ 630 (647)
+||.-+|+|+=+ .|..-.+..+-.++...|.+.|..||.|.-|++.. +.-+|.|.+-+.|.+|+. |+|..+.|+.
T Consensus 24 GPpDaTVvVsv~-~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~---~~mwVTF~dg~sALaals-~dg~~v~g~~ 98 (146)
T PF08952_consen 24 GPPDATVVVSVD-SPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG---DTMWVTFRDGQSALAALS-LDGIQVNGRT 98 (146)
T ss_dssp --TT-EEEEEEC-S-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET---TCEEEEESSCHHHHHHHH-GCCSEETTEE
T ss_pred CCCCceEEEEec-CCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC---CeEEEEECccHHHHHHHc-cCCcEECCEE
Confidence 566667776654 22222223445556788999999999999888873 578999999999999977 8999999999
Q ss_pred EEEEEcChhh
Q 006380 631 ISAIFMKPED 640 (647)
Q Consensus 631 l~v~~~~~~~ 640 (647)
|+|.+-+|+-
T Consensus 99 l~i~LKtpdW 108 (146)
T PF08952_consen 99 LKIRLKTPDW 108 (146)
T ss_dssp EEEEE-----
T ss_pred EEEEeCCccH
Confidence 9999988764
No 153
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.77 E-value=2.8e-05 Score=72.45 Aligned_cols=69 Identities=14% Similarity=0.232 Sum_probs=57.3
Q ss_pred eEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCHHHHHHHHHHhcCcccCCeE
Q 006380 556 CLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAMHMRWFARRL 630 (647)
Q Consensus 556 ~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~ 630 (647)
.|+.+.| ..+++ .+-|...|.+|-.....++.++ ++|++||.|.++.++..|+..|+|..++.++
T Consensus 192 RIfcgdl--gNevn--------d~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrp 261 (290)
T KOG0226|consen 192 RIFCGDL--GNEVN--------DDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRP 261 (290)
T ss_pred eeecccc--ccccc--------HHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccch
Confidence 5888888 65666 4778889999977666665443 6899999999999999999999999999999
Q ss_pred EEEE
Q 006380 631 ISAI 634 (647)
Q Consensus 631 l~v~ 634 (647)
|++.
T Consensus 262 iklR 265 (290)
T KOG0226|consen 262 IKLR 265 (290)
T ss_pred hHhh
Confidence 8863
No 154
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.70 E-value=4.8e-05 Score=80.53 Aligned_cols=81 Identities=15% Similarity=0.349 Sum_probs=68.5
Q ss_pred CCCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCC---CCCccceeeeeeeccCccccccccccCceeeeeeee
Q 006380 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRN---SRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLV 293 (647)
Q Consensus 217 ~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~---t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (647)
+.....||++||++.+++..|...|..||+|.+|+|+..+. ..+...||
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cg---------------------------- 222 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCG---------------------------- 222 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccc----------------------------
Confidence 45668899999999999999999999999999999998542 23334444
Q ss_pred ecccceEeecCCccccccCCcccccceeeEEecCCcCHHHHH-HhcCccccCccccCCCCh
Q 006380 294 AEVGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSE 353 (647)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al-~l~g~~~~g~~l~v~~~~ 353 (647)
||-|.+..+|..|+ .|+|+.+.+..+++.|..
T Consensus 223 ----------------------------fvafmnR~D~era~k~lqg~iv~~~e~K~gWgk 255 (877)
T KOG0151|consen 223 ----------------------------FVAFMNRADAERALKELQGIIVMEYEMKLGWGK 255 (877)
T ss_pred ----------------------------eeeehhhhhHHHHHHHhcceeeeeeeeeecccc
Confidence 99999999999999 499999999988887763
No 155
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.63 E-value=0.00015 Score=55.83 Aligned_cols=68 Identities=29% Similarity=0.459 Sum_probs=47.2
Q ss_pred ceEEEcCCCCCCCHHHHH----HhhccCC-CeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEE
Q 006380 378 RKLYVGNLHFNMTETQLR----KLFEPFG-PVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 452 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~----~~f~~~g-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v 452 (647)
..|+|.|||...+...|+ .++..+| .|..| +.+.|+|.|.+.+.|..|++.|+|. .+.|.+|.|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegE-dVfG~kI~v 71 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGE-DVFGNKISV 71 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT---SSSS--EE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhccc-ccccceEEE
Confidence 469999999999887765 4555664 55444 1468999999999999999999997 699999999
Q ss_pred Eeec
Q 006380 453 SSVT 456 (647)
Q Consensus 453 ~~~~ 456 (647)
.|..
T Consensus 72 ~~~~ 75 (90)
T PF11608_consen 72 SFSP 75 (90)
T ss_dssp ESS-
T ss_pred EEcC
Confidence 9975
No 156
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.61 E-value=0.00034 Score=56.89 Aligned_cols=76 Identities=16% Similarity=0.350 Sum_probs=60.6
Q ss_pred ceEEecCcCCCCCCCCchhhhhhHHHHHHHhhc--cCCeEEEEEecC-----CCceEEEEeCCHHHHHHHHHHhcCcccC
Q 006380 555 ECLLLKNMFDPAMETDPDFDLEIQGDVEEECSK--YGRVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAMHMRWFA 627 (647)
Q Consensus 555 ~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~--~G~v~~v~l~~~-----~~g~afV~F~~~~~A~~A~~~l~g~~~~ 627 (647)
++|.|+|| |...+ .++|.+++.. .|..-.+.|+-+ ..|+|||.|.+++.|.+-.+.++|+.+.
T Consensus 2 TTvMirNI--Pn~~t--------~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~ 71 (97)
T PF04059_consen 2 TTVMIRNI--PNKYT--------QEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP 71 (97)
T ss_pred eeEEEecC--CCCCC--------HHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence 47999999 99988 4555555543 367777777644 3799999999999999999999999985
Q ss_pred ----CeEEEEEEcChhh
Q 006380 628 ----RRLISAIFMKPED 640 (647)
Q Consensus 628 ----Gr~l~v~~~~~~~ 640 (647)
.++..|+||.-+=
T Consensus 72 ~~~s~Kvc~i~yAriQG 88 (97)
T PF04059_consen 72 NFNSKKVCEISYARIQG 88 (97)
T ss_pred cCCCCcEEEEehhHhhC
Confidence 7888888886554
No 157
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.60 E-value=0.00026 Score=57.99 Aligned_cols=72 Identities=11% Similarity=0.190 Sum_probs=53.3
Q ss_pred CceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEE------------EecCCCceEEEEeCCHHHHHHHHHHh
Q 006380 554 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIY------------VDKRSAGFVYLRFESTEAAASAQRAM 621 (647)
Q Consensus 554 ~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~------------l~~~~~g~afV~F~~~~~A~~A~~~l 621 (647)
...|.|.+. |... ...|.+.|++||.|.... -.....++..|+|++..+|.+|+. -
T Consensus 6 ~~wVtVFGf--p~~~---------~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~ 73 (100)
T PF05172_consen 6 ETWVTVFGF--PPSA---------SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-K 73 (100)
T ss_dssp CCEEEEE-----GGG---------HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-T
T ss_pred CeEEEEEcc--CHHH---------HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-h
Confidence 356899998 7654 588999999999998775 222457799999999999999988 5
Q ss_pred cCcccCCeEEE-EEEcC
Q 006380 622 HMRWFARRLIS-AIFMK 637 (647)
Q Consensus 622 ~g~~~~Gr~l~-v~~~~ 637 (647)
||..|+|..|. |.+.+
T Consensus 74 NG~i~~g~~mvGV~~~~ 90 (100)
T PF05172_consen 74 NGTIFSGSLMVGVKPCD 90 (100)
T ss_dssp TTEEETTCEEEEEEE-H
T ss_pred CCeEEcCcEEEEEEEcH
Confidence 99999987665 66653
No 158
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.56 E-value=0.00013 Score=75.54 Aligned_cols=79 Identities=23% Similarity=0.383 Sum_probs=64.4
Q ss_pred CCCCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeec
Q 006380 216 PERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAE 295 (647)
Q Consensus 216 ~~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (647)
+.+...+|||+|||.++|...|.++|.+||.|....|..-...+....||
T Consensus 284 ~~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fg------------------------------ 333 (419)
T KOG0116|consen 284 PRADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFG------------------------------ 333 (419)
T ss_pred eeecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceE------------------------------
Confidence 34455669999999999999999999999999988876644222222444
Q ss_pred ccceEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCC
Q 006380 296 VGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVK 350 (647)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~ 350 (647)
||+|.+..++..|+..+-..+.+..|.|.
T Consensus 334 --------------------------FV~f~~~~~~~~~i~Asp~~ig~~kl~Ve 362 (419)
T KOG0116|consen 334 --------------------------FVEFENAAAVQNAIEASPLEIGGRKLNVE 362 (419)
T ss_pred --------------------------EEEEeecchhhhhhhcCccccCCeeEEEE
Confidence 99999999999999888888889988885
No 159
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=0.00031 Score=72.75 Aligned_cols=83 Identities=12% Similarity=0.269 Sum_probs=67.4
Q ss_pred CceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC----CCceEEEEeCCHHHHHHHHHHhcCcccC-C
Q 006380 554 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR----SAGFVYLRFESTEAAASAQRAMHMRWFA-R 628 (647)
Q Consensus 554 ~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~----~~g~afV~F~~~~~A~~A~~~l~g~~~~-G 628 (647)
..+|+|.|+ |..-.+ -..-+..-|..+|+++|.|..+.++.+ .+|++|++|++..+|..|++.|||+.|+ +
T Consensus 58 D~vVvv~g~--PvV~~~--rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 58 DSVVVVDGA--PVVGPA--RLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred ceEEEECCC--cccChh--HHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 458999999 875432 233345678899999999999998743 4899999999999999999999999986 8
Q ss_pred eEEEEEEcChhh
Q 006380 629 RLISAIFMKPED 640 (647)
Q Consensus 629 r~l~v~~~~~~~ 640 (647)
+++.|..++.=+
T Consensus 134 Htf~v~~f~d~e 145 (698)
T KOG2314|consen 134 HTFFVRLFKDFE 145 (698)
T ss_pred ceEEeehhhhHH
Confidence 999998876543
No 160
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.49 E-value=0.0001 Score=76.65 Aligned_cols=84 Identities=24% Similarity=0.444 Sum_probs=69.5
Q ss_pred cCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhc-cCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCccc--
Q 006380 550 IGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSK-YGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWF-- 626 (647)
Q Consensus 550 ~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~-~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~-- 626 (647)
-..++++|+|.||+-|+. ..+|+.++.. .|.|+.+-|++ -+..|||.|.++++|...+.+|||..+
T Consensus 440 R~~~SnvlhI~nLvRPFT----------lgQLkelL~rtgg~Vee~WmDk-IKShCyV~yss~eEA~atr~AlhnV~WP~ 508 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFT----------LGQLKELLGRTGGNVEEFWMDK-IKSHCYVSYSSVEEAAATREALHNVQWPP 508 (718)
T ss_pred CCCccceEeeecccccch----------HHHHHHHHhhccCchHHHHHHH-hhcceeEecccHHHHHHHHHHHhccccCC
Confidence 457889999999988886 4789999995 55666664432 245799999999999999999999987
Q ss_pred -CCeEEEEEEcChhhhhhc
Q 006380 627 -ARRLISAIFMKPEDYEAK 644 (647)
Q Consensus 627 -~Gr~l~v~~~~~~~~~~~ 644 (647)
+++.|.+.|+..+++..+
T Consensus 509 sNPK~L~adf~~~deld~h 527 (718)
T KOG2416|consen 509 SNPKHLIADFVRADELDKH 527 (718)
T ss_pred CCCceeEeeecchhHHHHH
Confidence 689999999999987654
No 161
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.46 E-value=0.00053 Score=66.66 Aligned_cols=80 Identities=25% Similarity=0.324 Sum_probs=69.6
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCC--CeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEe
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFG--PVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 454 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g--~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~ 454 (647)
..++||+||-|.+|.+||.+.+...| .+..++++.+..+|.++|||+|...+....++.++.|-.+ .|.|+.-.|..
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k-~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTK-TIHGQSPTVLS 158 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccc-eecCCCCeeec
Confidence 46999999999999999999998776 4667788888889999999999999999999999999886 79998777766
Q ss_pred ecC
Q 006380 455 VTD 457 (647)
Q Consensus 455 ~~~ 457 (647)
+..
T Consensus 159 ~NK 161 (498)
T KOG4849|consen 159 YNK 161 (498)
T ss_pred cch
Confidence 654
No 162
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.39 E-value=2.1e-05 Score=78.07 Aligned_cols=120 Identities=25% Similarity=0.316 Sum_probs=95.6
Q ss_pred ceeeEEecCCcCHHHHHH-hcCc-cccCccccCCCChhhhhhhcccccCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHH
Q 006380 319 SYRYIEFYDVMSVPMAIA-LSGQ-LLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRK 396 (647)
Q Consensus 319 ~~afv~f~~~~~a~~al~-l~g~-~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~ 396 (647)
+||||...+...|..|++ ++|. .+.|..+.+..+.+.+-.. +.+-|.|+|+....+.|..
T Consensus 38 gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqrs------------------rk~Qirnippql~wevld~ 99 (584)
T KOG2193|consen 38 GYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQRS------------------RKIQIRNIPPQLQWEVLDS 99 (584)
T ss_pred ceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHHh------------------hhhhHhcCCHHHHHHHHHH
Confidence 466999999999999995 7776 5678888887665543332 6788999999999999999
Q ss_pred hhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecCCCC
Q 006380 397 LFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHVG 460 (647)
Q Consensus 397 ~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~~~~ 460 (647)
++..||.+..|..+. +....-..-|.|.+.+.+..||..|+|. .+....++|.|.-+...
T Consensus 100 Ll~qyg~ve~~eqvn---t~~etavvnvty~~~~~~~~ai~kl~g~-Q~en~~~k~~YiPdeq~ 159 (584)
T KOG2193|consen 100 LLAQYGTVENCEQVN---TDSETAVVNVTYSAQQQHRQAIHKLNGP-QLENQHLKVGYIPDEQN 159 (584)
T ss_pred HHhccCCHhHhhhhc---cchHHHHHHHHHHHHHHHHHHHHhhcch-HhhhhhhhcccCchhhh
Confidence 999999998886533 2222334568899999999999999995 89999999999876543
No 163
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.35 E-value=0.0013 Score=63.75 Aligned_cols=80 Identities=16% Similarity=0.311 Sum_probs=62.9
Q ss_pred ceEEEcCCCCCCCHHH----H--HHhhccCCCeeEEEeccCCCC-CCeee--EEEEEeCCHHHHHHHHHHHcCCeeeCCe
Q 006380 378 RKLYVGNLHFNMTETQ----L--RKLFEPFGPVELVQLPLDIET-GQCKG--FGFVQFAQLEHAKAAQSALNGKLEIVGR 448 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~----l--~~~f~~~g~i~~v~i~~~~~~-~~~~g--~afV~f~~~~~A~~Al~~l~g~~~~~g~ 448 (647)
.-+||-+||+.+..++ | .++|.+||.|..|.|-+.... ....+ -+||.|.+.++|..||...+|. .++|+
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs-~~DGr 193 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGS-LLDGR 193 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccc-cccCc
Confidence 6789999998886665 2 389999999998887554311 11122 3499999999999999999998 59999
Q ss_pred EEEEEeecCC
Q 006380 449 TLKVSSVTDH 458 (647)
Q Consensus 449 ~l~v~~~~~~ 458 (647)
.|+..|.+.+
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9999998764
No 164
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.35 E-value=0.00025 Score=70.00 Aligned_cols=83 Identities=28% Similarity=0.365 Sum_probs=75.3
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeE--------EEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCe
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVEL--------VQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGR 448 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~ 448 (647)
..+|||.+||..+++.+|..+|.++|.|.. |.|.+++.|+..+|-|.|.|.+...|+.|+.-++++ .|.|.
T Consensus 66 ~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agk-df~gn 144 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGK-DFCGN 144 (351)
T ss_pred cccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccc-cccCC
Confidence 579999999999999999999999988743 778888899999999999999999999999999997 79999
Q ss_pred EEEEEeecCCCC
Q 006380 449 TLKVSSVTDHVG 460 (647)
Q Consensus 449 ~l~v~~~~~~~~ 460 (647)
+|+|..|.....
T Consensus 145 ~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 145 TIKVSLAERRTG 156 (351)
T ss_pred CchhhhhhhccC
Confidence 999999886554
No 165
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.30 E-value=0.0007 Score=56.52 Aligned_cols=71 Identities=25% Similarity=0.387 Sum_probs=44.9
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcC----CeeeCCeEEEEE
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG----KLEIVGRTLKVS 453 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g----~~~~~g~~l~v~ 453 (647)
..|.|.+++..++-++|+++|+.||.|..|.+... -..|||.|.+.+.|+.|+..+.. .+.|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 57899999999999999999999999999988654 33799999999999999987743 245666666654
Q ss_pred e
Q 006380 454 S 454 (647)
Q Consensus 454 ~ 454 (647)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 4
No 166
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.25 E-value=0.0008 Score=65.18 Aligned_cols=82 Identities=22% Similarity=0.378 Sum_probs=61.7
Q ss_pred CceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----C-Cc--eEEEEeCCHHHHHHHHHHhcCcc
Q 006380 554 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----S-AG--FVYLRFESTEAAASAQRAMHMRW 625 (647)
Q Consensus 554 ~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~-~g--~afV~F~~~~~A~~A~~~l~g~~ 625 (647)
.+-+||.+| |..+.+++..-.+ .=.++|.+||.|..|.|-+. + .+ -+||.|.+.++|.+||...+|..
T Consensus 114 KNLvYVigi--~pkva~Ee~~~vL--k~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~ 189 (480)
T COG5175 114 KNLVYVIGI--PPKVADEEVAPVL--KRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSL 189 (480)
T ss_pred cceeEEecC--CCCCCcccccccc--cchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccc
Confidence 346889998 6666543322221 22578999999999988432 1 22 34999999999999999999999
Q ss_pred cCCeEEEEEEcChh
Q 006380 626 FARRLISAIFMKPE 639 (647)
Q Consensus 626 ~~Gr~l~v~~~~~~ 639 (647)
++|+.|+++|-+-.
T Consensus 190 ~DGr~lkatYGTTK 203 (480)
T COG5175 190 LDGRVLKATYGTTK 203 (480)
T ss_pred ccCceEeeecCchH
Confidence 99999999997654
No 167
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.24 E-value=0.00093 Score=47.99 Aligned_cols=52 Identities=25% Similarity=0.491 Sum_probs=43.2
Q ss_pred ceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHH
Q 006380 555 ECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQ 618 (647)
Q Consensus 555 ~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~ 618 (647)
+.|.|.+. +... .+.|...|..||.|..+.++ ....++||+|.+..+|.+|+
T Consensus 2 ~wI~V~Gf--~~~~---------~~~vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGF--PPDL---------AEEVLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeE--CchH---------HHHHHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 46788887 5443 47788899999999999998 34678999999999999995
No 168
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.92 E-value=0.0011 Score=66.64 Aligned_cols=63 Identities=21% Similarity=0.337 Sum_probs=52.0
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC------------------CCceEEEEeCCHHH
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR------------------SAGFVYLRFESTEA 613 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~------------------~~g~afV~F~~~~~ 613 (647)
-++++|++.|| |..-. .+.|.++|..+|.|+.|.|-.+ -+-||||+|.+.+.
T Consensus 229 l~srtivaenL--P~Dh~--------~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~ 298 (484)
T KOG1855|consen 229 LPSRTIVAENL--PLDHS--------YENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEA 298 (484)
T ss_pred cccceEEEecC--CcchH--------HHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHH
Confidence 57889999999 77533 4789999999999999988433 14589999999999
Q ss_pred HHHHHHHhcCc
Q 006380 614 AASAQRAMHMR 624 (647)
Q Consensus 614 A~~A~~~l~g~ 624 (647)
|.+|.+.|+..
T Consensus 299 A~KA~e~~~~e 309 (484)
T KOG1855|consen 299 ARKARELLNPE 309 (484)
T ss_pred HHHHHHhhchh
Confidence 99999988543
No 169
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.80 E-value=0.0026 Score=60.65 Aligned_cols=78 Identities=23% Similarity=0.221 Sum_probs=59.3
Q ss_pred ceEEEcCC--CCCCC---HHHHHHhhccCCCeeEEEeccCCCCCCe-eeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEE
Q 006380 378 RKLYVGNL--HFNMT---ETQLRKLFEPFGPVELVQLPLDIETGQC-KGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLK 451 (647)
Q Consensus 378 ~~l~v~nL--p~~~~---e~~l~~~f~~~g~i~~v~i~~~~~~~~~-~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~ 451 (647)
+.|.+.|+ +-.++ ++++++.|++||.|..|.|...+..... ..-.||+|...++|.+|+-.|||+ +|+|+.|.
T Consensus 282 kvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGR-yFGGr~v~ 360 (378)
T KOG1996|consen 282 KVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGR-YFGGRVVS 360 (378)
T ss_pred HHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCc-eecceeee
Confidence 45666665 33343 3678999999999999887665422111 335799999999999999999998 59999999
Q ss_pred EEeec
Q 006380 452 VSSVT 456 (647)
Q Consensus 452 v~~~~ 456 (647)
..|-.
T Consensus 361 A~Fyn 365 (378)
T KOG1996|consen 361 ACFYN 365 (378)
T ss_pred heecc
Confidence 88754
No 170
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.78 E-value=0.005 Score=64.10 Aligned_cols=79 Identities=32% Similarity=0.444 Sum_probs=63.1
Q ss_pred CceEEEcCCCCCCCH------HHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeee-CCeE
Q 006380 377 DRKLYVGNLHFNMTE------TQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEI-VGRT 449 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e------~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~-~g~~ 449 (647)
..+|+|.|+|.--.. .-|..+|+++|+|..+.++.+..+| ++||.|++|.+..+|..|++.|||. .| .+++
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~-~ldknHt 135 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGK-RLDKNHT 135 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccc-eecccce
Confidence 378999999865322 3456899999999999998887444 8999999999999999999999996 45 4567
Q ss_pred EEEEeecC
Q 006380 450 LKVSSVTD 457 (647)
Q Consensus 450 l~v~~~~~ 457 (647)
..|..-++
T Consensus 136 f~v~~f~d 143 (698)
T KOG2314|consen 136 FFVRLFKD 143 (698)
T ss_pred EEeehhhh
Confidence 77755544
No 171
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.78 E-value=0.00057 Score=64.36 Aligned_cols=64 Identities=22% Similarity=0.281 Sum_probs=54.0
Q ss_pred HHHHHhhc-cCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecC
Q 006380 392 TQLRKLFE-PFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 457 (647)
Q Consensus 392 ~~l~~~f~-~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~ 457 (647)
++|...|+ +||.|+.+.|..+. .....|-+||.|...++|.+|++.||++ +|.|++|...++..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnR-w~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNR-WYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCc-cccCCcceeeecCc
Confidence 56666666 99999998776553 5566899999999999999999999998 69999999888754
No 172
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.70 E-value=0.0018 Score=64.11 Aligned_cols=83 Identities=23% Similarity=0.460 Sum_probs=71.1
Q ss_pred CCCCceEEeccCCccCCHHHHHHHHHhcCCce--------eEEEeecCCCCCccceeeeeeeccCccccccccccCceee
Q 006380 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVR--------DVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVI 288 (647)
Q Consensus 217 ~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~--------~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~ 288 (647)
.....+|||-+||..+|+++|.++|.+||.|. .|.|.++++|+.++|=|
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGea----------------------- 119 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEA----------------------- 119 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCce-----------------------
Confidence 34567999999999999999999999999863 37788888888888888
Q ss_pred eeeeeecccceEeecCCccccccCCcccccceeeEEecCCcCHHHHHH-hcCccccCccccCCCChhh
Q 006380 289 KFFLVAEVGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAE 355 (647)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~-l~g~~~~g~~l~v~~~~~~ 355 (647)
.|.|.+...|+.|+. +++..++|+.|.|..+...
T Consensus 120 ---------------------------------tvS~~D~~~akaai~~~agkdf~gn~ikvs~a~~r 154 (351)
T KOG1995|consen 120 ---------------------------------TVSYEDPPAAKAAIEWFAGKDFCGNTIKVSLAERR 154 (351)
T ss_pred ---------------------------------eeeecChhhhhhhhhhhccccccCCCchhhhhhhc
Confidence 899999999999995 8999999988888766443
No 173
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.44 E-value=0.0017 Score=60.93 Aligned_cols=68 Identities=18% Similarity=0.262 Sum_probs=57.7
Q ss_pred CCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCC-----------------CceEEEEeCCHHHHH
Q 006380 553 PSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRS-----------------AGFVYLRFESTEAAA 615 (647)
Q Consensus 553 ~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~-----------------~g~afV~F~~~~~A~ 615 (647)
.+-+|||.|| |.-.. -.-|+++|+.||.|-.|.|.+.. -.-|||+|.+...|.
T Consensus 73 k~GVvylS~I--Pp~m~--------~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK 142 (278)
T KOG3152|consen 73 KTGVVYLSNI--PPYMD--------PVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAK 142 (278)
T ss_pred cceEEEeccC--CCccC--------HHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHH
Confidence 4568999999 87655 57899999999999999996431 125799999999999
Q ss_pred HHHHHhcCcccCCeE
Q 006380 616 SAQRAMHMRWFARRL 630 (647)
Q Consensus 616 ~A~~~l~g~~~~Gr~ 630 (647)
.....|||..|+|+.
T Consensus 143 ~iAe~Lnn~~Iggkk 157 (278)
T KOG3152|consen 143 RIAELLNNTPIGGKK 157 (278)
T ss_pred HHHHHhCCCccCCCC
Confidence 999999999999975
No 174
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.31 E-value=0.0041 Score=65.10 Aligned_cols=78 Identities=26% Similarity=0.285 Sum_probs=63.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhc-cCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeee---CCe
Q 006380 373 YGAIDRKLYVGNLHFNMTETQLRKLFE-PFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEI---VGR 448 (647)
Q Consensus 373 ~~~~~~~l~v~nLp~~~~e~~l~~~f~-~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~---~g~ 448 (647)
-..+++.|+|.||-...|...|+.++. ..|.|...+| | +-+..|||.|.+.++|.....+||| |.+ +++
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--D----kIKShCyV~yss~eEA~atr~Alhn-V~WP~sNPK 512 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--D----KIKSHCYVSYSSVEEAAATREALHN-VQWPPSNPK 512 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--H----HhhcceeEecccHHHHHHHHHHHhc-cccCCCCCc
Confidence 455689999999999999999999999 5666666633 2 2377899999999999999999999 444 567
Q ss_pred EEEEEeecC
Q 006380 449 TLKVSSVTD 457 (647)
Q Consensus 449 ~l~v~~~~~ 457 (647)
.|.|.|+..
T Consensus 513 ~L~adf~~~ 521 (718)
T KOG2416|consen 513 HLIADFVRA 521 (718)
T ss_pred eeEeeecch
Confidence 888988764
No 175
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.28 E-value=0.0091 Score=42.87 Aligned_cols=52 Identities=13% Similarity=0.307 Sum_probs=41.9
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHH
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 436 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al 436 (647)
+.|.|.+.+.... +.|...|..||.|..+.+.. ..-+.||.|.+..+|.+||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 5688888887655 55666888999999998852 2458999999999999985
No 176
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.14 E-value=0.0046 Score=58.20 Aligned_cols=71 Identities=27% Similarity=0.390 Sum_probs=60.0
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCC--------CCeee----EEEEEeCCHHHHHHHHHHHcCCeee
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIET--------GQCKG----FGFVQFAQLEHAKAAQSALNGKLEI 445 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~--------~~~~g----~afV~f~~~~~A~~Al~~l~g~~~~ 445 (647)
-.||+.+||+.....-|+++|+.||.|-.|.|-....+ |...+ -++|+|.+...|..+...||+. .|
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~-~I 153 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT-PI 153 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC-cc
Confidence 58999999999999999999999999999998766534 22222 3679999999999999999997 78
Q ss_pred CCeE
Q 006380 446 VGRT 449 (647)
Q Consensus 446 ~g~~ 449 (647)
+|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 8875
No 177
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.14 E-value=0.028 Score=48.99 Aligned_cols=77 Identities=30% Similarity=0.365 Sum_probs=52.1
Q ss_pred CCCCCCceEEEcCCCCC-----CCH----HHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCC
Q 006380 372 PYGAIDRKLYVGNLHFN-----MTE----TQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK 442 (647)
Q Consensus 372 ~~~~~~~~l~v~nLp~~-----~~e----~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~ 442 (647)
..+|+.-+|.|.-+.+. ... .+|.+.|..||.+.-|+++.+ .-+|.|.+-+.|.+|| .++|
T Consensus 22 ~~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~dg- 91 (146)
T PF08952_consen 22 SQGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLDG- 91 (146)
T ss_dssp ----TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGCC-
T ss_pred hcCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccCC-
Confidence 34555567777655411 222 367788899999888877544 4799999999999999 9999
Q ss_pred eeeCCeEEEEEeecCC
Q 006380 443 LEIVGRTLKVSSVTDH 458 (647)
Q Consensus 443 ~~~~g~~l~v~~~~~~ 458 (647)
++++|+.|+|..-++.
T Consensus 92 ~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 92 IQVNGRTLKIRLKTPD 107 (146)
T ss_dssp SEETTEEEEEEE----
T ss_pred cEECCEEEEEEeCCcc
Confidence 5899999999987653
No 178
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.99 E-value=0.022 Score=46.72 Aligned_cols=76 Identities=14% Similarity=0.110 Sum_probs=51.0
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEE-eccCC------CCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCe-E
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQ-LPLDI------ETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGR-T 449 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~-i~~~~------~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~-~ 449 (647)
.-|.|-+.|.. ....|.+.|++||.|.... +..+. .......+..|.|.+..+|.+|| ..||. .|.|. .
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~-i~~g~~m 83 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGT-IFSGSLM 83 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTE-EETTCEE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCe-EEcCcEE
Confidence 56888888887 6678889999999997764 11110 01123458899999999999999 88996 58875 4
Q ss_pred EEEEeec
Q 006380 450 LKVSSVT 456 (647)
Q Consensus 450 l~v~~~~ 456 (647)
+-|.|++
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 5577774
No 179
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.86 E-value=0.0079 Score=56.68 Aligned_cols=102 Identities=26% Similarity=0.359 Sum_probs=80.1
Q ss_pred HHHHH-HhcCccccCccccCCCChhhhhhhcccccCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEe
Q 006380 331 VPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQL 409 (647)
Q Consensus 331 a~~al-~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i 409 (647)
|..|- +|.+....|+.+.|.++.. ..|+|.||...+.-+.+.+.|+.||+|....+
T Consensus 7 ae~ak~eLd~~~~~~~~lr~rfa~~-----------------------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~ 63 (275)
T KOG0115|consen 7 AEIAKRELDGRFPKGRSLRVRFAMH-----------------------AELYVVNLMQGASNDLLEQAFRRFGPIERAVA 63 (275)
T ss_pred HHHHHHhcCCCCCCCCceEEEeecc-----------------------ceEEEEecchhhhhHHHHHhhhhcCccchhee
Confidence 33343 5899999999999877632 57999999999999999999999999988666
Q ss_pred ccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCC---eeeCCeEEEEEeec
Q 006380 410 PLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK---LEIVGRTLKVSSVT 456 (647)
Q Consensus 410 ~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~---~~~~g~~l~v~~~~ 456 (647)
..|. .+...+-++|+|...-.|.+|+..+.-. +...++.+.|..+.
T Consensus 64 ~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~e 112 (275)
T KOG0115|consen 64 KVDD-RGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPME 112 (275)
T ss_pred eecc-cccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChhh
Confidence 6664 6788889999999999999999877422 23445566665544
No 180
>PF15519 RBM39linker: linker between RRM2 and RRM3 domains in RBM39 protein; PDB: 3S6E_A 2LQ5_A.
Probab=95.82 E-value=0.0048 Score=47.37 Aligned_cols=26 Identities=65% Similarity=0.891 Sum_probs=0.0
Q ss_pred CCCCCCCcccchhhHHHHHHhhhhcC
Q 006380 472 DDDDGGGLALNAQSRALLMQKLDRTG 497 (647)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (647)
+..+..++.+++.++..+|.++++..
T Consensus 4 dd~d~~G~~l~a~sR~~LM~KLA~~~ 29 (73)
T PF15519_consen 4 DDDDRGGVNLNATSRAALMAKLARGD 29 (73)
T ss_dssp --------------------------
T ss_pred cccccccccccccccccccccccccc
Confidence 35567889999999999999998854
No 181
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.43 E-value=0.018 Score=58.29 Aligned_cols=66 Identities=24% Similarity=0.385 Sum_probs=55.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccC---CCC--CCe--------eeEEEEEeCCHHHHHHHHHHHcC
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLD---IET--GQC--------KGFGFVQFAQLEHAKAAQSALNG 441 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~---~~~--~~~--------~g~afV~f~~~~~A~~Al~~l~g 441 (647)
+.++|.+.|||..-..+.|.++|+.+|.|..|+|... +.+ +.. +-+|+|+|...+.|.+|.+.|+.
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 5699999999999999999999999999999999876 222 222 34689999999999999977743
No 182
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.27 E-value=0.082 Score=45.35 Aligned_cols=54 Identities=13% Similarity=0.182 Sum_probs=45.0
Q ss_pred HHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCCeEEEEEE
Q 006380 579 GDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIF 635 (647)
Q Consensus 579 edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l~v~~ 635 (647)
..|...++.||.|.+|.+- ++-.|.|.|.+..+|.+|+.+++. ..-|..+.+++
T Consensus 105 ~sV~~~Ls~fGpI~SVT~c--GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 105 KSVIQRLSVFGPIQSVTLC--GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred HHHHHHHHhcCCcceeeec--CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 3455567889999999998 567899999999999999999987 55677787776
No 183
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.92 E-value=0.14 Score=39.84 Aligned_cols=56 Identities=11% Similarity=0.264 Sum_probs=42.8
Q ss_pred CCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhc
Q 006380 553 PSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMH 622 (647)
Q Consensus 553 ~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~ 622 (647)
...+.+|. . |.++. ..||.++|+.||.|.--=|. -..|||...+.+.|..|+..+.
T Consensus 8 RdHVFhlt-F--PkeWK--------~~DI~qlFspfG~I~VsWi~---dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLT-F--PKEWK--------TSDIYQLFSPFGQIYVSWIN---DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE-----TT----------HHHHHHHCCCCCCEEEEEEC---TTEEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEe-C--chHhh--------hhhHHHHhccCCcEEEEEEc---CCcEEEEeecHHHHHHHHHHhc
Confidence 34566666 7 88877 78999999999998766665 3469999999999999998875
No 184
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.60 E-value=0.18 Score=39.29 Aligned_cols=55 Identities=22% Similarity=0.349 Sum_probs=41.9
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcC
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG 441 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g 441 (647)
..++|. +|..+.-.||.++|+.||.|. |..+.+. -|||.+.+.+.|..|+..+..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 456666 999999999999999999985 5555553 699999999999999877753
No 185
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=94.16 E-value=0.041 Score=53.99 Aligned_cols=50 Identities=16% Similarity=0.302 Sum_probs=42.9
Q ss_pred CCceEEeccCCccCCHHHHHHHHHhcCC--ceeEEEeecCCCCCccceeeee
Q 006380 219 DQRTVFAYQMPLKATERDVYEFFSKAGK--VRDVRLIMDRNSRRSKGVGNAI 268 (647)
Q Consensus 219 ~~~~v~i~nlp~~~te~~l~~~f~~~G~--v~~v~i~~d~~t~~s~G~~fv~ 268 (647)
.--++|||||-+-+|.++|.+.+...|. +.+++.+-++.+|.|+|||+|.
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~ 130 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLV 130 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEE
Confidence 3468999999999999999999988884 7788888899999999999443
No 186
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=94.00 E-value=0.045 Score=53.85 Aligned_cols=16 Identities=19% Similarity=0.470 Sum_probs=9.9
Q ss_pred hhhhhhhhhHHHhhhc
Q 006380 5 EYEYLEKTVEEQRQQK 20 (647)
Q Consensus 5 ~~~~~~~~~~~~~~~~ 20 (647)
+|.++..++.+..+..
T Consensus 216 Gy~~iR~~l~eLk~~~ 231 (319)
T KOG0796|consen 216 GYVLIREKLAELKKEK 231 (319)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666666666665544
No 187
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.98 E-value=0.15 Score=49.34 Aligned_cols=66 Identities=14% Similarity=0.137 Sum_probs=53.2
Q ss_pred CceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCCeEEE
Q 006380 554 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLIS 632 (647)
Q Consensus 554 ~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l~ 632 (647)
...|-|.++ |..- -.-|..+|.+||.|...... ..-.+-+|.|.+..+|.+||. -||++|+|.+|.
T Consensus 197 D~WVTVfGF--ppg~---------~s~vL~~F~~cG~Vvkhv~~-~ngNwMhirYssr~~A~KALs-kng~ii~g~vmi 262 (350)
T KOG4285|consen 197 DTWVTVFGF--PPGQ---------VSIVLNLFSRCGEVVKHVTP-SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMI 262 (350)
T ss_pred cceEEEecc--Cccc---------hhHHHHHHHhhCeeeeeecC-CCCceEEEEecchhHHHHhhh-hcCeeeccceEE
Confidence 456888887 5543 26799999999999887666 334589999999999999988 499999987664
No 188
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.93 E-value=0.22 Score=42.84 Aligned_cols=74 Identities=24% Similarity=0.277 Sum_probs=55.8
Q ss_pred CCCCceEEEcCCCCCC----CHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeE
Q 006380 374 GAIDRKLYVGNLHFNM----TETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRT 449 (647)
Q Consensus 374 ~~~~~~l~v~nLp~~~----~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~ 449 (647)
+++-.+|.|.=|...+ +...|...++.||+|.+|.+. | +-.|.|.|.+..+|-+|+.++... ..|..
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s~--~pgtm 153 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQSR--APGTM 153 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcCC--CCCce
Confidence 3444677776554444 445566778899999999773 2 347999999999999999999874 77888
Q ss_pred EEEEeec
Q 006380 450 LKVSSVT 456 (647)
Q Consensus 450 l~v~~~~ 456 (647)
+...|-.
T Consensus 154 ~qCsWqq 160 (166)
T PF15023_consen 154 FQCSWQQ 160 (166)
T ss_pred EEeeccc
Confidence 8888754
No 189
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.79 E-value=1.1 Score=37.52 Aligned_cols=76 Identities=18% Similarity=0.153 Sum_probs=55.4
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccC-CCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeC---CeEEEEE
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPF-GPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIV---GRTLKVS 453 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~-g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~---g~~l~v~ 453 (647)
..+++...|..++.++|..+.+.+ ..|..++|+++. ...+-.++++|.+.+.|......+||+ .|. ...++|-
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk-~FnslEpE~Chvv 90 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGK-PFNSLEPETCHVV 90 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCC-ccCCCCCceeEEE
Confidence 455555566666777777666655 457788998874 346778999999999999999999997 443 3456666
Q ss_pred eec
Q 006380 454 SVT 456 (647)
Q Consensus 454 ~~~ 456 (647)
|..
T Consensus 91 fV~ 93 (110)
T PF07576_consen 91 FVK 93 (110)
T ss_pred EEE
Confidence 654
No 190
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.64 E-value=0.19 Score=46.54 Aligned_cols=61 Identities=26% Similarity=0.294 Sum_probs=45.7
Q ss_pred HHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhc--CcccCCeEEEEEEcChh
Q 006380 578 QGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMH--MRWFARRLISAIFMKPE 639 (647)
Q Consensus 578 ~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~--g~~~~Gr~l~v~~~~~~ 639 (647)
...|.++|..|+.+..+...+ +=+-+.|.|.+.+.|..|...|+ +..|.|..|+|.|+.+.
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~-sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLK-SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEET-TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred HHHHHHHHHhcCCceEEEEcC-CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 578999999999877765543 44578999999999999999999 99999999999998543
No 191
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.49 E-value=0.24 Score=45.75 Aligned_cols=79 Identities=14% Similarity=0.132 Sum_probs=49.7
Q ss_pred ceEEEcCCCCCCCHHHHHHhhcc-CCCe---eEEE--eccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCC----
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEP-FGPV---ELVQ--LPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG---- 447 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~-~g~i---~~v~--i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g---- 447 (647)
..|.|++||+.+|++++.+.+.. ++.. ..+. +...........-|||.|.+.+++......++|...++.
T Consensus 8 ~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~~ 87 (176)
T PF03467_consen 8 TKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGNE 87 (176)
T ss_dssp -EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-E
T ss_pred ceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCCC
Confidence 68999999999999999998887 6655 2333 211111122345799999999999999999999632333
Q ss_pred eEEEEEeec
Q 006380 448 RTLKVSSVT 456 (647)
Q Consensus 448 ~~l~v~~~~ 456 (647)
....|.+|-
T Consensus 88 ~~~~VE~Ap 96 (176)
T PF03467_consen 88 YPAVVEFAP 96 (176)
T ss_dssp EEEEEEE-S
T ss_pred cceeEEEcc
Confidence 244556654
No 192
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.35 E-value=0.17 Score=52.15 Aligned_cols=73 Identities=21% Similarity=0.314 Sum_probs=59.4
Q ss_pred ceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCCeEEEEE
Q 006380 555 ECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAI 634 (647)
Q Consensus 555 ~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l~v~ 634 (647)
+.|.|.-+ |..+.+ ..+|...|.+||.|..|-+... .-.|.|+|.+..+|-.|.. .++-.|+|+-|+|-
T Consensus 373 s~l~lek~--~~glnt-------~a~ln~hfA~fG~i~n~qv~~~-~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~ 441 (526)
T KOG2135|consen 373 SPLALEKS--PFGLNT-------IADLNPHFAQFGEIENIQVDYS-SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLF 441 (526)
T ss_pred chhhhhcc--CCCCch-------HhhhhhhhhhcCccccccccCc-hhhheeeeeccccccchhc-cccceecCceeEEE
Confidence 34555544 665554 7899999999999999988754 4579999999999988855 69999999999998
Q ss_pred EcCh
Q 006380 635 FMKP 638 (647)
Q Consensus 635 ~~~~ 638 (647)
+..+
T Consensus 442 whnp 445 (526)
T KOG2135|consen 442 WHNP 445 (526)
T ss_pred EecC
Confidence 8765
No 193
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=93.19 E-value=0.37 Score=35.57 Aligned_cols=54 Identities=17% Similarity=0.175 Sum_probs=44.3
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccC---CCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHH
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPF---GPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL 439 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~---g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l 439 (647)
..|+|.++. ..+.++|+.+|..| .....|.++-|. -|-|.|.+.+.|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 689999986 47888999999988 235578888774 5889999999999999654
No 194
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.12 E-value=1.1 Score=37.61 Aligned_cols=75 Identities=17% Similarity=0.212 Sum_probs=53.8
Q ss_pred CceEEecCcCCCCCCCCchhhhhhHHHHHHHhhcc-CCeEEEEEecCCCc---eEEEEeCCHHHHHHHHHHhcCcccC--
Q 006380 554 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKY-GRVKHIYVDKRSAG---FVYLRFESTEAAASAQRAMHMRWFA-- 627 (647)
Q Consensus 554 ~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~-G~v~~v~l~~~~~g---~afV~F~~~~~A~~A~~~l~g~~~~-- 627 (647)
+.+++|-.+ |..++ .++|..+...+ ..|..+.|.+++.. .++++|.+.+.|..=...+||+.|.
T Consensus 13 ~~~~~l~vp--~~~~~--------~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fnsl 82 (110)
T PF07576_consen 13 STLCCLAVP--PYMTP--------SDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSL 82 (110)
T ss_pred ceEEEEEeC--ccccc--------HHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 444555544 55554 46677666666 46778888777644 8899999999999999999999986
Q ss_pred -CeEEEEEEcCh
Q 006380 628 -RRLISAIFMKP 638 (647)
Q Consensus 628 -Gr~l~v~~~~~ 638 (647)
.-+-+|.|+..
T Consensus 83 EpE~ChvvfV~~ 94 (110)
T PF07576_consen 83 EPETCHVVFVKS 94 (110)
T ss_pred CCceeEEEEEEE
Confidence 45566666543
No 195
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=92.44 E-value=0.33 Score=46.14 Aligned_cols=57 Identities=16% Similarity=0.221 Sum_probs=44.7
Q ss_pred eEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEE--e--cCCCceEEEEeCCHHHHHHHHHHhc
Q 006380 556 CLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYV--D--KRSAGFVYLRFESTEAAASAQRAMH 622 (647)
Q Consensus 556 ~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l--~--~~~~g~afV~F~~~~~A~~A~~~l~ 622 (647)
.|+|.|| ..-+. .+-|.+.|+.||.|....+ + ..+.+-++|+|...-.|.+|+..++
T Consensus 33 ~l~V~nl--~~~~s--------ndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 33 ELYVVNL--MQGAS--------NDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred eEEEEec--chhhh--------hHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhc
Confidence 6999999 54443 4778999999999986433 2 2256788999999999999998874
No 196
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=92.35 E-value=0.63 Score=34.35 Aligned_cols=54 Identities=20% Similarity=0.236 Sum_probs=40.8
Q ss_pred ceEEecCcCCCCCCCCchhhhhhHHHHHHHhhcc---CCeEEEEEecCCCceEEEEeCCHHHHHHHHHHh
Q 006380 555 ECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKY---GRVKHIYVDKRSAGFVYLRFESTEAAASAQRAM 621 (647)
Q Consensus 555 ~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~---G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l 621 (647)
..|+|.++ -... .+||+.+|..| .....|.-..+. .|-|-|.+.+.|.+|+.+|
T Consensus 6 eavhirGv--d~ls---------T~dI~~y~~~y~~~~~~~~IEWIdDt--ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGV--DELS---------TDDIKAYFSEYFDEEGPFRIEWIDDT--SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcC--CCCC---------HHHHHHHHHHhcccCCCceEEEecCC--cEEEEECCHHHHHHHHHcC
Confidence 46999998 3333 48999999998 234466555343 5889999999999999875
No 197
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=92.01 E-value=0.13 Score=54.18 Aligned_cols=8 Identities=25% Similarity=0.916 Sum_probs=3.3
Q ss_pred HHhhccCC
Q 006380 395 RKLFEPFG 402 (647)
Q Consensus 395 ~~~f~~~g 402 (647)
++++.+||
T Consensus 521 RevLKKyG 528 (752)
T KOG0670|consen 521 REVLKKYG 528 (752)
T ss_pred HHHHHHhC
Confidence 33444444
No 198
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=91.63 E-value=0.083 Score=52.29 Aligned_cols=81 Identities=19% Similarity=0.296 Sum_probs=61.8
Q ss_pred ceEEEcCCCCCCCHHHHH---HhhccCCCeeEEEeccCCC--CCC-eeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEE
Q 006380 378 RKLYVGNLHFNMTETQLR---KLFEPFGPVELVQLPLDIE--TGQ-CKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLK 451 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~---~~f~~~g~i~~v~i~~~~~--~~~-~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~ 451 (647)
.-+||.+|+..+..+.+. +.|.+||.|..|.+..+.. .+. ..--+||.|...++|..||...+| +.++|+.|+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g-~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDG-FVDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhh-HHhhhhhhH
Confidence 567788888777555544 6888999999998877652 111 112379999999999999999999 579999998
Q ss_pred EEeecCCC
Q 006380 452 VSSVTDHV 459 (647)
Q Consensus 452 v~~~~~~~ 459 (647)
+.+...+.
T Consensus 157 a~~gttky 164 (327)
T KOG2068|consen 157 ASLGTTKY 164 (327)
T ss_pred HhhCCCcc
Confidence 88877653
No 199
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=91.52 E-value=0.28 Score=54.19 Aligned_cols=63 Identities=21% Similarity=0.272 Sum_probs=53.3
Q ss_pred HHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccC--CeEEEEEEcChhhh
Q 006380 578 QGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFA--RRLISAIFMKPEDY 641 (647)
Q Consensus 578 ~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~--Gr~l~v~~~~~~~~ 641 (647)
---|..+|++||.|.+...-+ .-..|.|+|.+++.|..|+.+|+|+.+. |-+.+|+|+..-.|
T Consensus 312 SssL~~l~s~yg~v~s~wtlr-~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~ 376 (1007)
T KOG4574|consen 312 SSSLATLCSDYGSVASAWTLR-DLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPM 376 (1007)
T ss_pred HHHHHHHHHhhcchhhheecc-cccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccccc
Confidence 356899999999999986632 3457999999999999999999999864 88899999877664
No 200
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=90.05 E-value=0.45 Score=51.34 Aligned_cols=69 Identities=17% Similarity=0.149 Sum_probs=56.0
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCCeEE
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLI 631 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l 631 (647)
++.-++||+|+ -.... .+-++.+...+|.|.++.... |||++|..+..+..|+..|+-..++|..+
T Consensus 38 ~~~~~vfv~~~--~~~~s--------~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl 103 (668)
T KOG2253|consen 38 PPRDTVFVGNI--SYLVS--------QEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNIDDQKL 103 (668)
T ss_pred CCCceeEecch--hhhhh--------HHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCCcchh
Confidence 55668999999 33322 456777888899999988774 89999999999999999999999988877
Q ss_pred EEE
Q 006380 632 SAI 634 (647)
Q Consensus 632 ~v~ 634 (647)
.+-
T Consensus 104 ~~~ 106 (668)
T KOG2253|consen 104 IEN 106 (668)
T ss_pred hcc
Confidence 653
No 201
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=89.99 E-value=0.12 Score=51.28 Aligned_cols=77 Identities=18% Similarity=0.213 Sum_probs=56.1
Q ss_pred eEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCC--------CceEEEEeCCHHHHHHHHHHhcCcccC
Q 006380 556 CLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRS--------AGFVYLRFESTEAAASAQRAMHMRWFA 627 (647)
Q Consensus 556 ~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~--------~g~afV~F~~~~~A~~A~~~l~g~~~~ 627 (647)
-++|.+| +..+.|+.+.+. .+.|.+||.|..|.+-+.. ---+||.|...++|..||...+|..+.
T Consensus 79 lvyvvgl--~~~~ade~~l~~-----~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~d 151 (327)
T KOG2068|consen 79 LVYVVGL--PLDLADESVLER-----TEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDD 151 (327)
T ss_pred hhhhhCC--CccccchhhhhC-----cccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhh
Confidence 3556666 554444222111 3468899999999875421 124699999999999999999999999
Q ss_pred CeEEEEEEcChh
Q 006380 628 RRLISAIFMKPE 639 (647)
Q Consensus 628 Gr~l~v~~~~~~ 639 (647)
|+.|++.|.+..
T Consensus 152 g~~lka~~gttk 163 (327)
T KOG2068|consen 152 GRALKASLGTTK 163 (327)
T ss_pred hhhhHHhhCCCc
Confidence 999998886654
No 202
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.25 E-value=1.3 Score=43.14 Aligned_cols=75 Identities=21% Similarity=0.203 Sum_probs=56.0
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeE-EEEEeec
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRT-LKVSSVT 456 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~-l~v~~~~ 456 (647)
.=|.|-++|+. .-..|..+|+.||.|....... ...+-+|.|.+..+|.+|| ..+|+ .|+|.. |-|..|.
T Consensus 198 ~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~~------ngNwMhirYssr~~A~KAL-skng~-ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 198 TWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTPS------NGNWMHIRYSSRTHAQKAL-SKNGT-IIDGDVMIGVKPCT 268 (350)
T ss_pred ceEEEeccCcc-chhHHHHHHHhhCeeeeeecCC------CCceEEEEecchhHHHHhh-hhcCe-eeccceEEeeeecC
Confidence 34566667655 4567889999999997776542 2458999999999999999 77886 477754 5688887
Q ss_pred CCCCC
Q 006380 457 DHVGT 461 (647)
Q Consensus 457 ~~~~~ 461 (647)
++...
T Consensus 269 Dksvi 273 (350)
T KOG4285|consen 269 DKSVI 273 (350)
T ss_pred CHHHh
Confidence 65433
No 203
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=89.07 E-value=1.8 Score=32.56 Aligned_cols=55 Identities=16% Similarity=0.284 Sum_probs=42.8
Q ss_pred CCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEE
Q 006380 388 NMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 452 (647)
Q Consensus 388 ~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v 452 (647)
.++-++|+..|..|+-. .|..+. .|| ||.|.+..+|.++....+|+ .+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~-~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDR-----TGF-YIVFNDSKEAERCFRAEDGT-LFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecC-----CEE-EEEECChHHHHHHHHhcCCC-EEEEEEEEe
Confidence 46889999999999753 333443 455 99999999999999999997 577776654
No 204
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=88.64 E-value=0.22 Score=54.57 Aligned_cols=6 Identities=17% Similarity=-0.008 Sum_probs=3.2
Q ss_pred EEecCc
Q 006380 557 LLLKNM 562 (647)
Q Consensus 557 l~v~Nl 562 (647)
++..||
T Consensus 904 ~~d~nl 909 (1194)
T KOG4246|consen 904 ASDDNL 909 (1194)
T ss_pred cccccc
Confidence 445555
No 205
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.61 E-value=2.2 Score=45.43 Aligned_cols=81 Identities=16% Similarity=0.214 Sum_probs=62.6
Q ss_pred cCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhcc----CCeEEEEEecC--------------C-----------
Q 006380 550 IGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKY----GRVKHIYVDKR--------------S----------- 600 (647)
Q Consensus 550 ~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~----G~v~~v~l~~~--------------~----------- 600 (647)
.+.+++.|-|-|| +|.---..||..+|+.| |.|.+|.|.+. +
T Consensus 170 ~~~~T~RLAVvNM---------DWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~ 240 (650)
T KOG2318|consen 170 LGEETKRLAVVNM---------DWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEY 240 (650)
T ss_pred cccccceeeEecc---------ccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccC
Confidence 4677889999999 22221147888888766 68999988421 0
Q ss_pred ---------------------------CceEEEEeCCHHHHHHHHHHhcCcccC--CeEEEEEEcChh
Q 006380 601 ---------------------------AGFVYLRFESTEAAASAQRAMHMRWFA--RRLISAIFMKPE 639 (647)
Q Consensus 601 ---------------------------~g~afV~F~~~~~A~~A~~~l~g~~~~--Gr~l~v~~~~~~ 639 (647)
--||.|+|.+++.|.+.....+|..|. |..|-+.|+|..
T Consensus 241 ~~s~sD~ee~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPDd 308 (650)
T KOG2318|consen 241 KESESDDEEEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPDD 308 (650)
T ss_pred cccccchhhhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCCC
Confidence 027899999999999999999999997 788888888754
No 206
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.81 E-value=2.7 Score=43.44 Aligned_cols=77 Identities=16% Similarity=0.180 Sum_probs=62.1
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccC-CCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCC---eEEEE
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPF-GPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG---RTLKV 452 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~-g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g---~~l~v 452 (647)
+..|+|-.+|..++..||..++..+ -.|..|+|+++. -..+-.++|.|.+..+|....+.+||. .|.. ..++|
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk-~Fn~le~e~Chl 150 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGK-QFNSLEPEVCHL 150 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCC-cCCCCCccceeE
Confidence 4789999999999999999999876 467889999964 334567899999999999999999997 4543 45566
Q ss_pred Eeec
Q 006380 453 SSVT 456 (647)
Q Consensus 453 ~~~~ 456 (647)
-|+.
T Consensus 151 l~V~ 154 (493)
T KOG0804|consen 151 LYVD 154 (493)
T ss_pred EEEE
Confidence 5554
No 207
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=86.73 E-value=0.48 Score=52.44 Aligned_cols=77 Identities=27% Similarity=0.310 Sum_probs=64.4
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCC-eeeCCeEEEEEeec
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK-LEIVGRTLKVSSVT 456 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~-~~~~g~~l~v~~~~ 456 (647)
.+.++.|.+...+-.-|..+|.+||.|.+++.+++ -..|.|+|.+.+.|..|+.+|+|. +..-|.+.+|.+++
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 45556666667777889999999999999988777 357999999999999999999998 55678899999998
Q ss_pred CCCC
Q 006380 457 DHVG 460 (647)
Q Consensus 457 ~~~~ 460 (647)
.-..
T Consensus 373 ~~~~ 376 (1007)
T KOG4574|consen 373 TLPM 376 (1007)
T ss_pred cccc
Confidence 6543
No 208
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=86.61 E-value=0.74 Score=49.77 Aligned_cols=70 Identities=20% Similarity=0.282 Sum_probs=58.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEe
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 454 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~ 454 (647)
++..++||+|+-..+..+-++.++..+|.|.++.... |+|++|..+..+..|+..|+. +.++|..+.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~-~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTE-LNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcc-cCCCcchhhccc
Confidence 4458999999999999999999999999886655432 899999999999999988887 478888776543
No 209
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=85.99 E-value=1.1 Score=47.40 Aligned_cols=77 Identities=19% Similarity=0.253 Sum_probs=55.7
Q ss_pred CCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhc--cCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcC--cccCC
Q 006380 553 PSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSK--YGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHM--RWFAR 628 (647)
Q Consensus 553 ~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~--~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g--~~~~G 628 (647)
..++|+|+.| |+.+. +|+|+.+|.. +..++.|.+.-+ .-=||+|++..+|..|.+.|.- ..|-|
T Consensus 174 kRcIvilREI--pettp--------~e~Vk~lf~~encPk~iscefa~N--~nWyITfesd~DAQqAykylreevk~fqg 241 (684)
T KOG2591|consen 174 KRCIVILREI--PETTP--------IEVVKALFKGENCPKVISCEFAHN--DNWYITFESDTDAQQAYKYLREEVKTFQG 241 (684)
T ss_pred ceeEEEEeec--CCCCh--------HHHHHHHhccCCCCCceeeeeeec--CceEEEeecchhHHHHHHHHHHHHHhhcC
Confidence 3467899999 98887 7999999976 567888877533 2359999999999999987743 23555
Q ss_pred eEEEE------EEcChhhh
Q 006380 629 RLISA------IFMKPEDY 641 (647)
Q Consensus 629 r~l~v------~~~~~~~~ 641 (647)
+.|.. +|++...|
T Consensus 242 KpImARIKaintf~pkngy 260 (684)
T KOG2591|consen 242 KPIMARIKAINTFFPKNGY 260 (684)
T ss_pred cchhhhhhhhhcccCCCCC
Confidence 54433 55555544
No 210
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=84.27 E-value=2.3 Score=45.05 Aligned_cols=68 Identities=12% Similarity=0.113 Sum_probs=51.7
Q ss_pred ceEEEcCCCCCCCHHHHHHhhcc--CCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCC-eeeCCeEEEE
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEP--FGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK-LEIVGRTLKV 452 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~--~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~-~~~~g~~l~v 452 (647)
+.|+|+-||..+-.++|+.+|.. +-.+.+|.+-.+. -=||.|.+..+|+.|.+.|... -.|.|++|..
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 67778999999999999999985 5566677664432 2399999999999999887543 2466766543
No 211
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=84.16 E-value=2.4 Score=39.09 Aligned_cols=77 Identities=13% Similarity=0.116 Sum_probs=50.2
Q ss_pred ceEEecCcCCCCCCCCchhhhhhHHHHHHHhhc-cCCe---EEEE--Eec-----CCCceEEEEeCCHHHHHHHHHHhcC
Q 006380 555 ECLLLKNMFDPAMETDPDFDLEIQGDVEEECSK-YGRV---KHIY--VDK-----RSAGFVYLRFESTEAAASAQRAMHM 623 (647)
Q Consensus 555 ~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~-~G~v---~~v~--l~~-----~~~g~afV~F~~~~~A~~A~~~l~g 623 (647)
..|+|++| |..++ ++++.+.++. ++.. .++. ... ..-..|||.|.+.+++..=+..++|
T Consensus 8 ~KvVIR~L--PP~Lt--------eeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g 77 (176)
T PF03467_consen 8 TKVVIRRL--PPNLT--------EEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDG 77 (176)
T ss_dssp -EEEEEEE---TTS---------HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTT
T ss_pred ceEEEeCC--CCCCC--------HHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCC
Confidence 47999999 99998 6777776666 6655 3343 211 1234799999999999999999999
Q ss_pred cccC---C--eEEEEEEcChhhh
Q 006380 624 RWFA---R--RLISAIFMKPEDY 641 (647)
Q Consensus 624 ~~~~---G--r~l~v~~~~~~~~ 641 (647)
..|- | ....|.|++-+.+
T Consensus 78 ~~F~D~kg~~~~~~VE~Apyqk~ 100 (176)
T PF03467_consen 78 HVFVDSKGNEYPAVVEFAPYQKV 100 (176)
T ss_dssp EEEE-TTS-EEEEEEEE-SS---
T ss_pred cEEECCCCCCcceeEEEcchhcc
Confidence 8873 3 4667788775443
No 212
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=83.19 E-value=2.3 Score=39.40 Aligned_cols=60 Identities=23% Similarity=0.234 Sum_probs=44.9
Q ss_pred CHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHc--CCeeeCCeEEEEEeec
Q 006380 390 TETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALN--GKLEIVGRTLKVSSVT 456 (647)
Q Consensus 390 ~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~--g~~~~~g~~l~v~~~~ 456 (647)
....|..+|..|+.+..+.+++. -+-..|.|.+.+.|..|...|+ +. .+.|..+.|.|+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~-~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGT-SFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TS-EETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhccccc-ccCCCceEEEEcc
Confidence 45789999999999887776654 4568999999999999999999 85 7999999999985
No 213
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=82.24 E-value=0.57 Score=46.22 Aligned_cols=12 Identities=17% Similarity=0.241 Sum_probs=5.5
Q ss_pred hhhhhhhhHHHh
Q 006380 6 YEYLEKTVEEQR 17 (647)
Q Consensus 6 ~~~~~~~~~~~~ 17 (647)
+.+++..++...
T Consensus 236 ~~li~~~vd~~k 247 (367)
T KOG0835|consen 236 ETLIEAFVDRLK 247 (367)
T ss_pred HHHHHHHHHHhh
Confidence 344455554443
No 214
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=80.10 E-value=5.6 Score=30.70 Aligned_cols=55 Identities=11% Similarity=0.127 Sum_probs=32.9
Q ss_pred HHHHHHHhhccC-----CeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCCeEEEEEEc
Q 006380 578 QGDVEEECSKYG-----RVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFM 636 (647)
Q Consensus 578 ~edl~~~f~~~G-----~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l~v~~~ 636 (647)
..+|..++...+ .|-.|.|. ..++||+-.. +.|..++..|++..+.|+.|+|+.+
T Consensus 15 ~~~iv~~i~~~~gi~~~~IG~I~I~---~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 15 PRDIVGAICNEAGIPGRDIGRIDIF---DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred HHHHHHHHHhccCCCHHhEEEEEEe---eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 456666666554 45567776 3589999884 5789999999999999999999864
No 215
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=80.03 E-value=5.4 Score=41.35 Aligned_cols=74 Identities=16% Similarity=0.302 Sum_probs=58.1
Q ss_pred CceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccC-CeEEEEEecCCC---ceEEEEeCCHHHHHHHHHHhcCcccC--
Q 006380 554 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYG-RVKHIYVDKRSA---GFVYLRFESTEAAASAQRAMHMRWFA-- 627 (647)
Q Consensus 554 ~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G-~v~~v~l~~~~~---g~afV~F~~~~~A~~A~~~l~g~~~~-- 627 (647)
+..|+|-.+ |.-.+ --||..|+..|- .|..|.|.+++. =.++|.|.+..+|..=.+.+||..|+
T Consensus 74 ~~mLcilaV--P~~mt--------~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~l 143 (493)
T KOG0804|consen 74 STMLCILAV--PAYMT--------SHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNSL 143 (493)
T ss_pred CcEEEEEec--ccccc--------HHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCCC
Confidence 667999999 88776 688888888774 577888876653 36799999999999999999999986
Q ss_pred -CeEEEEEEcC
Q 006380 628 -RRLISAIFMK 637 (647)
Q Consensus 628 -Gr~l~v~~~~ 637 (647)
.-+-+|-|+.
T Consensus 144 e~e~Chll~V~ 154 (493)
T KOG0804|consen 144 EPEVCHLLYVD 154 (493)
T ss_pred CccceeEEEEE
Confidence 3344444443
No 216
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=75.95 E-value=1.3 Score=45.97 Aligned_cols=76 Identities=14% Similarity=0.144 Sum_probs=62.8
Q ss_pred CCCCceEEeccCCccC-CHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeec
Q 006380 217 ERDQRTVFAYQMPLKA-TERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAE 295 (647)
Q Consensus 217 ~~~~~~v~i~nlp~~~-te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (647)
..+++.|-+.-+|+.. |-++|...|.+||.|..|++-....
T Consensus 369 ~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~-------------------------------------- 410 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL-------------------------------------- 410 (526)
T ss_pred hcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchh--------------------------------------
Confidence 5667788888888776 7889999999999999998855422
Q ss_pred ccceEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCChh
Q 006380 296 VGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEA 354 (647)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~~ 354 (647)
-|.|.|.+-.+|-.|....+..|+++.|+|.|...
T Consensus 411 ------------------------~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 411 ------------------------HAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred ------------------------hheeeeeccccccchhccccceecCceeEEEEecC
Confidence 13899999999999999999999999999987643
No 217
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.44 E-value=14 Score=39.79 Aligned_cols=86 Identities=23% Similarity=0.366 Sum_probs=63.8
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHhhccC----CCeeEEEeccCC----------CCCC---------------------
Q 006380 374 GAIDRKLYVGNLHFN-MTETQLRKLFEPF----GPVELVQLPLDI----------ETGQ--------------------- 417 (647)
Q Consensus 374 ~~~~~~l~v~nLp~~-~~e~~l~~~f~~~----g~i~~v~i~~~~----------~~~~--------------------- 417 (647)
+..+++|-|.||.|. +...+|.-+|+.| |.|.+|.|...- ..|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 445689999999987 4889999888866 688888775311 1111
Q ss_pred ----------------eeeEEEEEeCCHHHHHHHHHHHcCCeeeC--CeEEEEEeecCCCC
Q 006380 418 ----------------CKGFGFVQFAQLEHAKAAQSALNGKLEIV--GRTLKVSSVTDHVG 460 (647)
Q Consensus 418 ----------------~~g~afV~f~~~~~A~~Al~~l~g~~~~~--g~~l~v~~~~~~~~ 460 (647)
.-.||.|+|.++..|......++| +.|. +..|-+.|.-+...
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG-~EfEsS~~~~DLRFIPDdm~ 310 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDG-IEFESSANKLDLRFIPDDMT 310 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCc-ceeccccceeeeeecCCCCc
Confidence 124899999999999999999999 5665 56677777766543
No 218
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=73.42 E-value=14 Score=29.65 Aligned_cols=33 Identities=9% Similarity=0.129 Sum_probs=25.3
Q ss_pred EEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEe
Q 006380 422 GFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 454 (647)
Q Consensus 422 afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~ 454 (647)
|+|.|....-|...+..-.-.+.+++.++.|.-
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v 33 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKV 33 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEE
Confidence 689999999999998655555777877766543
No 219
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=70.51 E-value=5 Score=36.34 Aligned_cols=60 Identities=22% Similarity=0.231 Sum_probs=46.4
Q ss_pred HHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCCe-EEEEEEcChh
Q 006380 579 GDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR-LISAIFMKPE 639 (647)
Q Consensus 579 edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr-~l~v~~~~~~ 639 (647)
.....+|.+|-......+.+ +.+..-|.|.+++.|..|...++++.|.|. .+++-|+.+.
T Consensus 30 ~~~~~lFrq~n~~~~fq~lr-sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 30 ALFENLFRQINEDATFQLLR-SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred HHHHhHHhhhCcchHHHHHH-hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCC
Confidence 45666777777666554442 456788999999999999999999999998 7777776554
No 220
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=70.26 E-value=11 Score=28.98 Aligned_cols=59 Identities=22% Similarity=0.305 Sum_probs=34.5
Q ss_pred CCCCHHHHHHhhccCC-----CeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEee
Q 006380 387 FNMTETQLRKLFEPFG-----PVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 455 (647)
Q Consensus 387 ~~~~e~~l~~~f~~~g-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~ 455 (647)
..++..+|..++...+ .|-.|.|..+ |+||+.... .|..++..|++. .+.|+.|.|..|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~-~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGK-KIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT---SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCC-CCCCeeEEEEEC
Confidence 3567888888887654 3556777433 889988765 777888899985 899999999764
No 221
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=67.83 E-value=7.2 Score=29.32 Aligned_cols=52 Identities=21% Similarity=0.217 Sum_probs=41.4
Q ss_pred HHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCCeEEEE
Q 006380 578 QGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISA 633 (647)
Q Consensus 578 ~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l~v 633 (647)
.++|+..+..|+-. .|...+ .--||-|.+..+|.++....+|..+.+..|.+
T Consensus 14 v~d~K~~Lr~y~~~-~I~~d~---tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 14 VEDFKKRLRKYRWD-RIRDDR---TGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred HHHHHHHHhcCCcc-eEEecC---CEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 47888888888743 333442 23599999999999999999999999988764
No 222
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=67.60 E-value=2 Score=34.28 Aligned_cols=72 Identities=21% Similarity=0.115 Sum_probs=42.3
Q ss_pred eeEEecCCcCHHHHHHhcCc--cccCccccCCCChhhhhhhcccccCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHhh
Q 006380 321 RYIEFYDVMSVPMAIALSGQ--LLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLF 398 (647)
Q Consensus 321 afv~f~~~~~a~~al~l~g~--~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f 398 (647)
|.|.|....-|...+.+... .+.+..+.|...+........-. .-.+...++|.|.|||...+++.|++.+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~q-------v~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQ-------VFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEE-------EEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 57899999999888864443 44455444432211111000000 0011224899999999999999998654
Q ss_pred c
Q 006380 399 E 399 (647)
Q Consensus 399 ~ 399 (647)
+
T Consensus 74 e 74 (88)
T PF07292_consen 74 E 74 (88)
T ss_pred E
Confidence 4
No 223
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=64.35 E-value=21 Score=34.68 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=40.2
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHHhhccCCCe-eEEEeccCCCCCCeeeEEEEEeCCH
Q 006380 369 ATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPV-ELVQLPLDIETGQCKGFGFVQFAQL 429 (647)
Q Consensus 369 ~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i-~~v~i~~~~~~~~~~g~afV~f~~~ 429 (647)
.++...+...-|+|+||+..+...||+..+.+.+.+ .+|.+ .| ..|-||+.|.+.
T Consensus 322 ~~g~~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw-----kg-~~~k~flh~~~~ 377 (396)
T KOG4410|consen 322 QSGVEAGAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW-----KG-HFGKCFLHFGNR 377 (396)
T ss_pred CCcccCccccceeeccCccccchHHHHHHHHhcCCCceeEee-----ec-CCcceeEecCCc
Confidence 333444446789999999999999999999887754 33444 22 267899999764
No 224
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=62.76 E-value=4 Score=39.14 Aligned_cols=39 Identities=23% Similarity=0.405 Sum_probs=30.2
Q ss_pred CCCCCceEEeccCCccC------------CHHHHHHHHHhcCCceeEEEee
Q 006380 216 PERDQRTVFAYQMPLKA------------TERDVYEFFSKAGKVRDVRLIM 254 (647)
Q Consensus 216 ~~~~~~~v~i~nlp~~~------------te~~l~~~f~~~G~v~~v~i~~ 254 (647)
|.....||++.+||-.+ ++..|...|..||.|..|.|+.
T Consensus 145 pgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 145 PGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 33455789999988543 5778999999999998888754
No 225
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=56.25 E-value=19 Score=30.56 Aligned_cols=86 Identities=10% Similarity=0.203 Sum_probs=40.9
Q ss_pred eEEecCcCCCCCCCCch-hhhhhHHHHHHHhhccCCeEEEEEe--cCCCceEEEEeCCHHHHHHHHHHhcCccc------
Q 006380 556 CLLLKNMFDPAMETDPD-FDLEIQGDVEEECSKYGRVKHIYVD--KRSAGFVYLRFESTEAAASAQRAMHMRWF------ 626 (647)
Q Consensus 556 ~l~v~Nl~~p~~~~d~~-~~~~i~edl~~~f~~~G~v~~v~l~--~~~~g~afV~F~~~~~A~~A~~~l~g~~~------ 626 (647)
+++|.|+ |.+..++. +.-.--+.|.+.|..|..++...+. ....|++.|+|..--..-+-...|+..+-
T Consensus 10 mgIi~N~--~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~l~~~F~~~~~Gr 87 (116)
T PF03468_consen 10 MGIIVNI--PTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMRLEKHFEAQGHGR 87 (116)
T ss_dssp EEEEE------EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHHHHHHHHHTT-SH
T ss_pred EEEEEcC--ccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHHHHHHHHHcCCCH
Confidence 6888888 66554333 1111136788888888776544443 33478999999996665554455543221
Q ss_pred --------CCeEEEEEEcChhhhhh
Q 006380 627 --------ARRLISAIFMKPEDYEA 643 (647)
Q Consensus 627 --------~Gr~l~v~~~~~~~~~~ 643 (647)
.+..|.-=.+..++|.+
T Consensus 88 ~dW~~~~~~~~~lYGw~A~~dD~~~ 112 (116)
T PF03468_consen 88 KDWERRRGGGSQLYGWVARADDYNS 112 (116)
T ss_dssp HHHT-SSS---S-EEEE-BHHHHHS
T ss_pred HHHhhccCCCCceeeeeCchhhccC
Confidence 34555555666666664
No 226
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=55.55 E-value=47 Score=34.10 Aligned_cols=37 Identities=11% Similarity=0.164 Sum_probs=32.5
Q ss_pred eEEEEeCCHHHHHHHHHHhcCcccC--CeEEEEEEcChh
Q 006380 603 FVYLRFESTEAAASAQRAMHMRWFA--RRLISAIFMKPE 639 (647)
Q Consensus 603 ~afV~F~~~~~A~~A~~~l~g~~~~--Gr~l~v~~~~~~ 639 (647)
+|.|+|.+++.+.......+|..+. +..+-+.|+|..
T Consensus 260 yAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvPD~ 298 (622)
T COG5638 260 YAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVPDS 298 (622)
T ss_pred EEEEEeccchhhHHHHhccCccccccccceeeeeecCCC
Confidence 7899999999999999999999987 678888888753
No 227
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=48.61 E-value=45 Score=32.95 Aligned_cols=76 Identities=17% Similarity=0.226 Sum_probs=53.4
Q ss_pred CCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCC------------CceEEEEeCCHHHHHHHH--
Q 006380 553 PSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRS------------AGFVYLRFESTEAAASAQ-- 618 (647)
Q Consensus 553 ~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~------------~g~afV~F~~~~~A~~A~-- 618 (647)
.++.|++.|| -..+. .-.+...|.+||.|++|++.... .-.+.+.|-+.+.+.-=.
T Consensus 14 rTRSLLfeNv--~~sid--------Lh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNn 83 (309)
T PF10567_consen 14 RTRSLLFENV--NNSID--------LHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNN 83 (309)
T ss_pred eeHHHHHhhc--ccccc--------HHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHH
Confidence 5667999999 33322 35677778999999999996432 357899999988765432
Q ss_pred --HHhcC--cccCCeEEEEEEcCh
Q 006380 619 --RAMHM--RWFARRLISAIFMKP 638 (647)
Q Consensus 619 --~~l~g--~~~~Gr~l~v~~~~~ 638 (647)
+.|+- ..+....|+|+|+.-
T Consensus 84 vLQrLsEfK~~L~S~~L~lsFV~l 107 (309)
T PF10567_consen 84 VLQRLSEFKTKLKSESLTLSFVSL 107 (309)
T ss_pred HHHHHHHHHHhcCCcceeEEEEEE
Confidence 33332 347788999999863
No 228
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.73 E-value=33 Score=35.15 Aligned_cols=55 Identities=16% Similarity=0.163 Sum_probs=45.7
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCe-eEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHH
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPV-ELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSA 438 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i-~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~ 438 (647)
...|-|.++|.....+||...|+.|+.- -.|.++-+. .||..|.+..-|..||..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 4789999999999999999999988643 456676653 799999999999999944
No 229
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=44.74 E-value=43 Score=26.52 Aligned_cols=49 Identities=18% Similarity=0.294 Sum_probs=32.6
Q ss_pred CeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCCeEEEEEEcChhhhh
Q 006380 590 RVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYE 642 (647)
Q Consensus 590 ~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l~v~~~~~~~~~ 642 (647)
.|.+|..+..-+|+.|||=.+..+...|+..+-+....- ...++.+++.
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i~~~~----~~~vp~~E~~ 81 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHIRGSR----PGLVPIEEME 81 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTEEEEC----CEEB-GGGTC
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhcccceeecc----ceeECHHHHH
Confidence 677888888889999999999999999987766544332 3456666553
No 230
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=44.41 E-value=9 Score=36.85 Aligned_cols=71 Identities=14% Similarity=0.221 Sum_probs=46.1
Q ss_pred CceEEecCcCCCCCCCC--chhhh--hhHHHHHHHhhccCCeEEEEEec-C-------C-------Cc---------eEE
Q 006380 554 SECLLLKNMFDPAMETD--PDFDL--EIQGDVEEECSKYGRVKHIYVDK-R-------S-------AG---------FVY 605 (647)
Q Consensus 554 ~~~l~v~Nl~~p~~~~d--~~~~~--~i~edl~~~f~~~G~v~~v~l~~-~-------~-------~g---------~af 605 (647)
..+|++-+| |..|-. ++-++ -.++.|...|..||.|..|.|+- + + .| -||
T Consensus 149 pdti~la~i--p~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeay 226 (445)
T KOG2891|consen 149 PDTIHLAGI--PCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAY 226 (445)
T ss_pred CCceeecCC--cceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHH
Confidence 346888887 764432 01111 23678999999999999998851 1 1 22 246
Q ss_pred EEeCCHHHHHHHHHHhcCccc
Q 006380 606 LRFESTEAAASAQRAMHMRWF 626 (647)
Q Consensus 606 V~F~~~~~A~~A~~~l~g~~~ 626 (647)
|+|...-.-..|+..|-|..+
T Consensus 227 vqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 227 VQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHHhHHHHHHHHhcchH
Confidence 777777777777777877654
No 231
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=41.97 E-value=63 Score=23.87 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=18.5
Q ss_pred hhHHHHHHHhhccCCeEEEEEe
Q 006380 576 EIQGDVEEECSKYGRVKHIYVD 597 (647)
Q Consensus 576 ~i~edl~~~f~~~G~v~~v~l~ 597 (647)
.|..+|+++|+..|.|.-+.+.
T Consensus 6 ~i~~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 6 EITAEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHHHHhcCcEEEEEEc
Confidence 3568999999999999887773
No 232
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=40.76 E-value=66 Score=31.79 Aligned_cols=82 Identities=18% Similarity=0.191 Sum_probs=59.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCC-------CCCeeeEEEEEeCCHHHHHHH----HHHHcCC-
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIE-------TGQCKGFGFVQFAQLEHAKAA----QSALNGK- 442 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~-------~~~~~g~afV~f~~~~~A~~A----l~~l~g~- 442 (647)
..++.|.+.|+...++-..+...|-+||+|++|.++.+.. .......+.+-|-+.+.+... |+.|+.-
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 3468899999999999999999999999999999987641 122345678899888877653 3333210
Q ss_pred eeeCCeEEEEEeec
Q 006380 443 LEIVGRTLKVSSVT 456 (647)
Q Consensus 443 ~~~~g~~l~v~~~~ 456 (647)
-.+....|.|.|+.
T Consensus 93 ~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 93 TKLKSESLTLSFVS 106 (309)
T ss_pred HhcCCcceeEEEEE
Confidence 13667778888776
No 233
>PF11671 Apis_Csd: Complementary sex determiner protein; InterPro: IPR021007 Sex determination proteins are found in eukaryotes. Proteins in this family are typically between 168 and 410 amino acids in length. It plays a role in the gender determination of around 20% of all animals. In the honeybee, the mechanism of sex determination depends on the complementary sex determiner (csd) gene which produces an SR-type protein. Males are homozygous while females are homozygous for the csd gene. Heterozygosity generates an active protein which initiates female development []. This entry represents the C-terminal end of the sex determination protein.
Probab=39.53 E-value=4.1 Score=34.34 Aligned_cols=12 Identities=17% Similarity=0.293 Sum_probs=7.7
Q ss_pred CceEEeccCCcc
Q 006380 220 QRTVFAYQMPLK 231 (647)
Q Consensus 220 ~~~v~i~nlp~~ 231 (647)
.-.||.||+|..
T Consensus 85 PVPvyy~nfpp~ 96 (146)
T PF11671_consen 85 PVPVYYGNFPPR 96 (146)
T ss_pred ccceEecCCCCC
Confidence 356777777654
No 234
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=38.64 E-value=1.3e+02 Score=24.17 Aligned_cols=66 Identities=17% Similarity=0.134 Sum_probs=44.4
Q ss_pred hHHHHHHHhhccC-CeEEEEEec-CCCceEEEEeCCHHHHHHHHHHhcCcccC-CeEEEEEEcChhhhhhc
Q 006380 577 IQGDVEEECSKYG-RVKHIYVDK-RSAGFVYLRFESTEAAASAQRAMHMRWFA-RRLISAIFMKPEDYEAK 644 (647)
Q Consensus 577 i~edl~~~f~~~G-~v~~v~l~~-~~~g~afV~F~~~~~A~~A~~~l~g~~~~-Gr~l~v~~~~~~~~~~~ 644 (647)
..+.+.++++.+| .|+++.+.. .--..+.+++-+.+.|.++.-.+... + -+.-.+..++.++|...
T Consensus 21 R~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~~~--G~v~~et~~a~~~~e~~~~ 89 (91)
T PF08734_consen 21 RAEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIRSS--GNVRTETLRAFPWDEFDEI 89 (91)
T ss_pred HHHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHHcC--CceEEEEEecCCHHHHHHH
Confidence 4567888888875 788887742 22345688999888888776554332 2 14466677888887654
No 235
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=36.34 E-value=57 Score=24.69 Aligned_cols=61 Identities=16% Similarity=0.242 Sum_probs=42.6
Q ss_pred HHHHHhhccCC-CeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 392 TQLRKLFEPFG-PVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 392 ~~l~~~f~~~g-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
++|.+.|...| .|..|.-+....+....-..||++....+...++ .+. .++++.|.|....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~-~Ik---~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY-KIK---TLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee-ehH---hhCCeEEEEecCC
Confidence 46778888777 5666766666556666678899998877655554 332 3788889998764
No 236
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=32.76 E-value=2.9e+02 Score=27.22 Aligned_cols=46 Identities=20% Similarity=0.123 Sum_probs=34.4
Q ss_pred eEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCH
Q 006380 556 CLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFEST 611 (647)
Q Consensus 556 ~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~ 611 (647)
-|+|.|| +-... -.||+..+.+-|++---.-.+.+.|-||++|-+.
T Consensus 332 di~~~nl--~rd~r--------v~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 332 DIKLTNL--SRDIR--------VKDLKSELRKRECTPMSISWKGHFGKCFLHFGNR 377 (396)
T ss_pred ceeeccC--ccccc--------hHHHHHHHHhcCCCceeEeeecCCcceeEecCCc
Confidence 3999999 76654 4788888888887654444445688999999874
No 237
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=32.13 E-value=67 Score=27.32 Aligned_cols=51 Identities=8% Similarity=0.180 Sum_probs=29.6
Q ss_pred ceEEeccCCccC---------CHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCc
Q 006380 221 RTVFAYQMPLKA---------TERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDG 274 (647)
Q Consensus 221 ~~v~i~nlp~~~---------te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~ 274 (647)
.++.|-|+|... +.+.|.+.|..|.++ .|+.+.+.. -+.|++.|.|...-.
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~~--gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGKQ--GHTGFAIVEFNKDWS 68 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEETT--EEEEEEEEE--SSHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCCC--CCcEEEEEEECCChH
Confidence 367777886543 567899999999886 477777654 568999998877643
No 238
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=31.15 E-value=1.4e+02 Score=26.82 Aligned_cols=48 Identities=19% Similarity=0.135 Sum_probs=35.9
Q ss_pred HHHHHHHhhccC-CeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcc
Q 006380 578 QGDVEEECSKYG-RVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRW 625 (647)
Q Consensus 578 ~edl~~~f~~~G-~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~ 625 (647)
.+.|.......| .|.+|.++..-.||.||+....+++-.|+..+.|..
T Consensus 22 ~~~L~~~~~~~~~~i~~i~vp~~fpGYVfVe~~~~~~~~~~i~~v~~v~ 70 (153)
T PRK08559 22 ALMLAMRAKKENLPIYAILAPPELKGYVLVEAESKGAVEEAIRGIPHVR 70 (153)
T ss_pred HHHHHHHHHhCCCcEEEEEccCCCCcEEEEEEEChHHHHHHHhcCCCEe
Confidence 455666554333 277888887789999999998899999998887643
No 239
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.12 E-value=79 Score=32.53 Aligned_cols=54 Identities=19% Similarity=0.126 Sum_probs=40.2
Q ss_pred ceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCe-EEEEEecCCCceEEEEeCCHHHHHHHHHH
Q 006380 555 ECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRV-KHIYVDKRSAGFVYLRFESTEAAASAQRA 620 (647)
Q Consensus 555 ~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v-~~v~l~~~~~g~afV~F~~~~~A~~A~~~ 620 (647)
.+|-|+|+ |.... .+||...|+.|++- -.|+-+ ....||--|.+...|..|+..
T Consensus 392 HVlEIydf--p~efk--------teDll~~f~~yq~kgfdIkWv--DdthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 392 HVLEIYDF--PDEFK--------TEDLLKAFETYQNKGFDIKWV--DDTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred ceeEeccC--chhhc--------cHHHHHHHHHhhcCCceeEEe--ecceeEEeecchHHHHHHhhc
Confidence 58999999 77665 58999999999742 233333 234788999999999988764
No 240
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=30.75 E-value=30 Score=30.75 Aligned_cols=82 Identities=11% Similarity=0.051 Sum_probs=55.1
Q ss_pred eeeEEecCCcCHHHHHHhcCccccCccccCCCChhhhhhhcccccCCCCCCCCCCCCCceEEEcCCCCCC-CHHHHHHhh
Q 006380 320 YRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNM-TETQLRKLF 398 (647)
Q Consensus 320 ~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~-~e~~l~~~f 398 (647)
+..++|.+.+++..++......+.|..+.+..-.+........ .....-=|.|.|||... +++-|..+.
T Consensus 57 ~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~~~~~~~----------~~~~~vWVri~glP~~~~~~~~~~~i~ 126 (153)
T PF14111_consen 57 LFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDFNPSEVK----------FEHIPVWVRIYGLPLHLWSEEILKAIG 126 (153)
T ss_pred eEEEEEEeccceeEEEecccccccccchhhhhhcccccccccc----------eeccchhhhhccCCHHHhhhHHHHHHH
Confidence 4478999999999999877777788777775443211110000 00011346678999885 778889999
Q ss_pred ccCCCeeEEEecc
Q 006380 399 EPFGPVELVQLPL 411 (647)
Q Consensus 399 ~~~g~i~~v~i~~ 411 (647)
+.+|.+..+....
T Consensus 127 ~~iG~~i~vD~~t 139 (153)
T PF14111_consen 127 SKIGEPIEVDENT 139 (153)
T ss_pred HhcCCeEEEEcCC
Confidence 9999997776643
No 241
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=30.68 E-value=3.6e+02 Score=23.36 Aligned_cols=57 Identities=19% Similarity=0.186 Sum_probs=46.5
Q ss_pred HHHHHHHhhccC-CeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCCeEEEEEEcC
Q 006380 578 QGDVEEECSKYG-RVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMK 637 (647)
Q Consensus 578 ~edl~~~f~~~G-~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l~v~~~~ 637 (647)
-..|.+....-| .++++.... +...|.|.+.++-.+|.+.|....=.+..|-+.+++
T Consensus 52 ~~~v~~~L~~~gI~~ksi~~~~---~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~p 109 (127)
T PRK10629 52 GFYVYQHLDANGIHIKSITPEN---DSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDDN 109 (127)
T ss_pred HHHHHHHHHHCCCCcceEEeeC---CEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 467888888877 566777763 368999999999999999998887778888888876
No 242
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=30.24 E-value=39 Score=30.03 Aligned_cols=58 Identities=17% Similarity=0.230 Sum_probs=36.9
Q ss_pred CCHHHHHHhhcc----CCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 389 MTETQLRKLFEP----FGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 389 ~~e~~l~~~f~~----~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
.+-..|...+.. .|.+.-..+ ..++..+.|.+.+++..++. .+.+.+.|..+.+..-.
T Consensus 29 ~~~~~l~~~l~~~W~~~~~~~i~~l--------~~~~fl~~F~~~~d~~~vl~--~~p~~~~~~~~~l~~W~ 90 (153)
T PF14111_consen 29 ISLSALEQELAKIWKLKGGVKIRDL--------GDNLFLFQFESEEDRQRVLK--GGPWNFNGHFLILQRWS 90 (153)
T ss_pred CCHHHHHHHHHHHhCCCCcEEEEEe--------CCCeEEEEEEeccceeEEEe--cccccccccchhhhhhc
Confidence 455556555543 344333333 25789999999999999983 33356777777765544
No 243
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=29.18 E-value=45 Score=31.79 Aligned_cols=14 Identities=21% Similarity=0.347 Sum_probs=7.6
Q ss_pred CeeeEEEEEeCCHH
Q 006380 417 QCKGFGFVQFAQLE 430 (647)
Q Consensus 417 ~~~g~afV~f~~~~ 430 (647)
.++-.|.|+|-.++
T Consensus 214 cSKQHaviQyR~v~ 227 (293)
T KOG1882|consen 214 CSKQHAVIQYRLVE 227 (293)
T ss_pred ccccceeeeeeecc
Confidence 34555666665543
No 244
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=28.26 E-value=85 Score=23.98 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=21.3
Q ss_pred ceEEEEeCCHHHHHHHHHHhcCccc
Q 006380 602 GFVYLRFESTEAAASAQRAMHMRWF 626 (647)
Q Consensus 602 g~afV~F~~~~~A~~A~~~l~g~~~ 626 (647)
...+|.|.+..+|.+|-+.|...-+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCC
Confidence 4689999999999999998876554
No 245
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=25.41 E-value=96 Score=24.54 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=24.4
Q ss_pred CeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcC
Q 006380 403 PVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG 441 (647)
Q Consensus 403 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g 441 (647)
.|.++..+.+ .+||.|||=.+..++..|+..+.+
T Consensus 33 ~I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 33 NIYSIFAPDS-----LKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp ---EEEE-TT-----STSEEEEEESSHHHHHHHHTT-TT
T ss_pred ceEEEEEeCC-----CceEEEEEeCCHHHHHHHHhcccc
Confidence 4666666433 599999999999999999987776
No 246
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=24.53 E-value=92 Score=26.00 Aligned_cols=47 Identities=17% Similarity=0.231 Sum_probs=31.5
Q ss_pred CCCCCCHHHHHHhhcc---CCCeeEEEeccCCCCCCeeeEEEEEeCCHHH
Q 006380 385 LHFNMTETQLRKLFEP---FGPVELVQLPLDIETGQCKGFGFVQFAQLEH 431 (647)
Q Consensus 385 Lp~~~~e~~l~~~f~~---~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~ 431 (647)
-|+.+|-.+++++|.. |-.|+.-.+.+|....-+-..||.-|.....
T Consensus 82 ~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~~~ 131 (145)
T TIGR02542 82 PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNATQF 131 (145)
T ss_pred CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccchh
Confidence 4888899999999984 4445554555554333345589988876533
No 247
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=22.38 E-value=90 Score=28.56 Aligned_cols=74 Identities=18% Similarity=0.167 Sum_probs=51.2
Q ss_pred ceEEEcCCCCCCCH-----HHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCe-EEE
Q 006380 378 RKLYVGNLHFNMTE-----TQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGR-TLK 451 (647)
Q Consensus 378 ~~l~v~nLp~~~~e-----~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~-~l~ 451 (647)
..+.+.+++..+-. .....+|..|.+....++++. .+..-|-|.+++.|..|.-.+++. .|.|. .++
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~-~f~~~~~~k 83 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHST-SFNGKNELK 83 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhc-ccCCCceEE
Confidence 45666666655422 223456666666555555543 567889999999999999899985 78887 777
Q ss_pred EEeecCC
Q 006380 452 VSSVTDH 458 (647)
Q Consensus 452 v~~~~~~ 458 (647)
.-++++.
T Consensus 84 ~yfaQ~~ 90 (193)
T KOG4019|consen 84 LYFAQPG 90 (193)
T ss_pred EEEccCC
Confidence 7777653
No 248
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=22.35 E-value=14 Score=39.40 Aligned_cols=65 Identities=22% Similarity=0.162 Sum_probs=50.5
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcC
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG 441 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g 441 (647)
.+.|++.|+++.++-.+|..+|..+.-+..+.+...........+.+|.|.-......|+.+|++
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~ 295 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNG 295 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhh
Confidence 47899999999999999999999987777766654433334456788999877777777777777
No 249
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=21.97 E-value=3.3e+02 Score=19.95 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=27.4
Q ss_pred HHHHHHHhhccC-CeEEEEEecC-CCceEEEEeCCHHHHHHHHHH
Q 006380 578 QGDVEEECSKYG-RVKHIYVDKR-SAGFVYLRFESTEAAASAQRA 620 (647)
Q Consensus 578 ~edl~~~f~~~G-~v~~v~l~~~-~~g~afV~F~~~~~A~~A~~~ 620 (647)
..+|.++|.+.| +|.++.+... ..+..-|.+.+.+.|.++++.
T Consensus 15 La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~~ 59 (66)
T cd04908 15 LAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALKE 59 (66)
T ss_pred HHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHHH
Confidence 367888888776 6888876332 234445566666666666554
No 250
>KOG2217 consensus U4/U6.U5 snRNP associated protein [RNA processing and modification]
Probab=20.64 E-value=40 Score=37.14 Aligned_cols=9 Identities=22% Similarity=0.375 Sum_probs=4.3
Q ss_pred HHHHHHhcC
Q 006380 237 VYEFFSKAG 245 (647)
Q Consensus 237 l~~~f~~~G 245 (647)
+.+++..+|
T Consensus 165 l~~~dee~g 173 (705)
T KOG2217|consen 165 LSELDEESG 173 (705)
T ss_pred hhhhhhhhc
Confidence 444444454
Done!