Query 006380
Match_columns 647
No_of_seqs 395 out of 3263
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 23:29:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006380.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006380hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 4.7E-38 1.6E-42 317.8 24.7 240 219-641 21-266 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 4.1E-38 1.4E-42 319.6 24.2 246 217-639 38-291 (292)
3 4f02_A Polyadenylate-binding p 100.0 6.1E-29 2.1E-33 239.2 16.9 170 215-457 10-180 (213)
4 4f02_A Polyadenylate-binding p 100.0 1.4E-28 4.8E-33 236.7 18.8 166 376-640 14-182 (213)
5 3pgw_A U1-A; protein-RNA compl 100.0 5.5E-27 1.9E-31 236.3 27.5 250 374-637 6-281 (282)
6 1l3k_A Heterogeneous nuclear r 100.0 3.5E-28 1.2E-32 231.2 17.3 177 217-461 10-186 (196)
7 3md3_A Nuclear and cytoplasmic 100.0 1.7E-27 5.8E-32 219.9 18.3 164 221-456 1-165 (166)
8 2cjk_A Nuclear polyadenylated 100.0 4.6E-28 1.6E-32 224.1 14.4 165 219-458 2-166 (167)
9 1b7f_A Protein (SXL-lethal pro 100.0 4.8E-27 1.6E-31 217.4 20.6 159 377-636 3-168 (168)
10 3md3_A Nuclear and cytoplasmic 100.0 5.4E-27 1.8E-31 216.5 20.8 161 378-638 1-166 (166)
11 1fxl_A Paraneoplastic encephal 99.9 1.1E-26 3.7E-31 214.7 21.2 159 377-636 2-167 (167)
12 1b7f_A Protein (SXL-lethal pro 99.9 1.9E-27 6.6E-32 220.0 16.0 164 219-455 2-168 (168)
13 1fxl_A Paraneoplastic encephal 99.9 3.8E-27 1.3E-31 217.7 16.9 163 220-455 2-167 (167)
14 1l3k_A Heterogeneous nuclear r 99.9 1.3E-26 4.4E-31 220.3 20.5 170 376-642 12-186 (196)
15 2qfj_A FBP-interacting repress 99.9 7.5E-27 2.6E-31 225.6 18.8 179 219-459 27-206 (216)
16 2qfj_A FBP-interacting repress 99.9 1.9E-26 6.3E-31 222.8 20.3 176 378-643 29-209 (216)
17 3nmr_A Cugbp ELAV-like family 99.9 1.3E-26 4.6E-31 215.9 17.5 166 219-456 2-175 (175)
18 2yh0_A Splicing factor U2AF 65 99.9 7.5E-27 2.6E-31 222.3 13.3 184 218-458 2-194 (198)
19 2adc_A Polypyrimidine tract-bi 99.9 1.4E-25 4.9E-30 218.2 22.2 194 375-639 32-228 (229)
20 3nmr_A Cugbp ELAV-like family 99.9 8.1E-26 2.8E-30 210.6 19.6 161 377-637 3-175 (175)
21 2g4b_A Splicing factor U2AF 65 99.9 6.1E-27 2.1E-31 217.6 11.0 160 218-456 2-172 (172)
22 1fje_B Nucleolin RBD12, protei 99.9 1.5E-26 5.1E-31 215.6 11.6 166 216-458 9-174 (175)
23 2cjk_A Nuclear polyadenylated 99.9 2.9E-26 1E-30 211.9 13.3 159 377-639 3-166 (167)
24 1qm9_A Polypyrimidine tract-bi 99.9 1.8E-25 6E-30 212.8 18.9 192 377-639 3-197 (198)
25 3tyt_A Heterogeneous nuclear r 99.9 3.1E-25 1.1E-29 210.9 20.1 185 376-629 3-193 (205)
26 1fje_B Nucleolin RBD12, protei 99.9 5.2E-26 1.8E-30 211.9 13.4 164 375-639 11-174 (175)
27 3smz_A Protein raver-1, ribonu 99.9 4.1E-25 1.4E-29 222.8 18.9 171 218-459 93-265 (284)
28 2yh0_A Splicing factor U2AF 65 99.9 1.4E-24 4.7E-29 206.6 19.6 175 377-639 4-194 (198)
29 2g4b_A Splicing factor U2AF 65 99.9 1.1E-24 3.9E-29 202.2 17.4 153 377-637 4-172 (172)
30 3tyt_A Heterogeneous nuclear r 99.9 1.6E-24 5.5E-29 205.9 14.6 173 219-455 3-204 (205)
31 2adc_A Polypyrimidine tract-bi 99.9 3.3E-24 1.1E-28 208.6 16.9 176 215-457 29-227 (229)
32 2ghp_A U4/U6 snRNA-associated 99.9 1.4E-24 4.9E-29 219.7 14.8 172 219-458 116-291 (292)
33 3pgw_A U1-A; protein-RNA compl 99.9 4.3E-24 1.5E-28 215.1 17.9 175 217-456 6-281 (282)
34 1qm9_A Polypyrimidine tract-bi 99.9 4E-24 1.4E-28 203.4 14.9 171 220-457 3-196 (198)
35 3sde_A Paraspeckle component 1 99.9 2.3E-23 7.8E-28 206.8 19.3 151 377-640 22-180 (261)
36 3sde_A Paraspeckle component 1 99.9 8.5E-24 2.9E-28 209.9 15.6 157 217-458 19-179 (261)
37 3s6e_A RNA-binding protein 39; 99.8 7.9E-21 2.7E-25 160.7 10.8 97 551-647 4-101 (114)
38 3v4m_A Splicing factor U2AF 65 99.8 6.9E-20 2.4E-24 153.3 11.1 94 551-644 2-102 (105)
39 2kn4_A Immunoglobulin G-bindin 99.8 3.6E-18 1.2E-22 155.7 13.8 134 322-459 17-151 (158)
40 2kn4_A Immunoglobulin G-bindin 99.7 1.9E-17 6.5E-22 150.8 15.7 78 552-639 68-150 (158)
41 2i2y_A Fusion protein consists 99.7 6.7E-18 2.3E-22 152.3 12.4 139 415-639 9-148 (150)
42 3ue2_A Poly(U)-binding-splicin 99.7 1.1E-17 3.8E-22 142.4 9.0 88 552-644 18-114 (118)
43 4fxv_A ELAV-like protein 1; RN 99.7 3.3E-17 1.1E-21 135.8 11.5 80 377-457 19-98 (99)
44 2pe8_A Splicing factor 45; RRM 99.7 3.6E-17 1.2E-21 136.6 10.8 89 551-644 5-99 (105)
45 2i2y_A Fusion protein consists 99.7 1.3E-17 4.6E-22 150.3 8.8 135 317-458 12-148 (150)
46 4f25_A Polyadenylate-binding p 99.7 8.4E-17 2.9E-21 137.7 11.2 77 378-457 6-82 (115)
47 2lxi_A RNA-binding protein 10; 99.7 2.8E-17 9.6E-22 134.1 7.4 82 378-459 2-84 (91)
48 2wbr_A GW182, gawky, LD47780P; 99.7 1.2E-16 4.2E-21 125.2 9.9 84 552-646 5-88 (89)
49 2lkz_A RNA-binding protein 5; 99.7 8.4E-17 2.9E-21 131.7 8.9 80 378-457 10-94 (95)
50 3s8s_A Histone-lysine N-methyl 99.7 4.2E-16 1.4E-20 131.7 12.5 81 375-456 4-84 (110)
51 2e5h_A Zinc finger CCHC-type a 99.6 1.2E-15 4.1E-20 125.6 12.4 84 372-456 11-94 (94)
52 2cqc_A Arginine/serine-rich sp 99.6 1.8E-15 6E-20 124.9 12.8 83 374-457 12-94 (95)
53 2dgo_A Cytotoxic granule-assoc 99.6 3.8E-15 1.3E-19 127.6 15.3 86 375-461 13-98 (115)
54 1whw_A Hypothetical protein ri 99.6 2.4E-15 8.2E-20 125.1 13.1 85 376-461 7-91 (99)
55 2cqb_A Peptidyl-prolyl CIS-tra 99.6 1.7E-15 5.9E-20 126.7 12.1 85 375-460 10-94 (102)
56 4f25_A Polyadenylate-binding p 99.6 1.3E-16 4.5E-21 136.5 5.3 108 219-392 4-112 (115)
57 2cq0_A Eukaryotic translation 99.6 3E-15 1E-19 125.4 13.5 85 374-459 12-96 (103)
58 3mdf_A Peptidyl-prolyl CIS-tra 99.6 1.4E-15 4.8E-20 122.6 10.9 80 376-456 6-85 (85)
59 2dgs_A DAZ-associated protein 99.6 3E-15 1E-19 124.5 13.2 85 374-460 7-91 (99)
60 3md1_A Nuclear and cytoplasmic 99.6 2.2E-15 7.7E-20 120.8 12.0 80 378-458 2-81 (83)
61 3r27_A HnRNP L, heterogeneous 99.6 1.5E-15 5.1E-20 124.0 10.8 80 550-640 17-98 (100)
62 3bs9_A Nucleolysin TIA-1 isofo 99.6 1.9E-15 6.5E-20 122.4 11.4 80 377-457 6-85 (87)
63 3pgw_S U1-70K; protein-RNA com 99.6 4.1E-16 1.4E-20 164.6 9.3 85 375-460 100-184 (437)
64 1x4h_A RNA-binding protein 28; 99.6 4.5E-15 1.5E-19 126.3 13.5 85 375-460 13-103 (111)
65 1x5s_A Cold-inducible RNA-bind 99.6 2E-15 6.8E-20 126.3 11.0 85 375-460 10-94 (102)
66 2do4_A Squamous cell carcinoma 99.6 6E-15 2E-19 122.9 13.9 83 375-459 15-97 (100)
67 2x1f_A MRNA 3'-END-processing 99.6 2.6E-15 8.9E-20 124.0 11.6 82 377-459 2-83 (96)
68 2dnz_A Probable RNA-binding pr 99.6 3.4E-15 1.2E-19 123.1 12.1 84 376-460 4-87 (95)
69 1x5u_A Splicing factor 3B subu 99.6 3.3E-15 1.1E-19 125.7 12.3 86 374-460 12-97 (105)
70 2cpz_A CUG triplet repeat RNA- 99.6 4.8E-15 1.7E-19 126.9 13.1 85 375-460 23-107 (115)
71 3r27_A HnRNP L, heterogeneous 99.6 2.9E-15 9.8E-20 122.4 11.0 80 373-458 17-97 (100)
72 2jrs_A RNA-binding protein 39; 99.6 3.5E-15 1.2E-19 125.9 11.9 83 375-458 24-106 (108)
73 2la6_A RNA-binding protein FUS 99.6 4.1E-15 1.4E-19 123.6 12.1 82 374-456 10-99 (99)
74 2cph_A RNA binding motif prote 99.6 4.5E-15 1.5E-19 125.3 12.4 87 373-460 11-99 (107)
75 2dit_A HIV TAT specific factor 99.6 1.7E-15 5.7E-20 128.9 9.3 90 551-640 12-103 (112)
76 2lea_A Serine/arginine-rich sp 99.6 7.5E-16 2.6E-20 135.6 7.3 122 320-459 6-128 (135)
77 2dnm_A SRP46 splicing factor; 99.6 3.4E-15 1.2E-19 125.1 11.0 84 375-459 11-94 (103)
78 4fxv_A ELAV-like protein 1; RN 99.6 2.3E-15 8E-20 124.6 9.7 76 553-638 18-98 (99)
79 1p27_B RNA-binding protein 8A; 99.6 4.2E-15 1.4E-19 125.3 11.4 82 376-458 22-103 (106)
80 2d9p_A Polyadenylate-binding p 99.6 9.6E-15 3.3E-19 122.3 13.5 84 375-461 13-96 (103)
81 3ns6_A Eukaryotic translation 99.6 9.8E-16 3.3E-20 127.4 7.2 80 377-457 6-92 (100)
82 2dnh_A Bruno-like 5, RNA bindi 99.6 9.5E-15 3.3E-19 122.9 13.4 84 375-460 13-99 (105)
83 3p5t_L Cleavage and polyadenyl 99.6 9.2E-16 3.1E-20 125.0 6.8 81 378-459 2-84 (90)
84 1x5t_A Splicing factor 3B subu 99.6 2.9E-15 9.9E-20 123.8 9.8 83 376-459 4-87 (96)
85 2do0_A HnRNP M, heterogeneous 99.6 2.4E-14 8.3E-19 122.3 15.9 85 373-459 11-95 (114)
86 2dng_A Eukaryotic translation 99.6 1.1E-14 3.7E-19 122.0 13.2 83 374-459 12-94 (103)
87 2cpf_A RNA binding motif prote 99.6 4.9E-15 1.7E-19 122.9 10.7 84 376-460 4-90 (98)
88 1wi8_A EIF-4B, eukaryotic tran 99.6 8.5E-15 2.9E-19 122.9 12.2 83 375-460 13-96 (104)
89 1oo0_B CG8781-PA, drosophila Y 99.6 6.6E-15 2.2E-19 125.0 11.6 83 375-458 24-106 (110)
90 2dgp_A Bruno-like 4, RNA bindi 99.6 5.8E-15 2E-19 124.4 10.9 85 374-459 10-97 (106)
91 2cqd_A RNA-binding region cont 99.6 1.6E-14 5.4E-19 123.9 13.8 86 372-459 12-97 (116)
92 2div_A TRNA selenocysteine ass 99.6 5E-15 1.7E-19 123.1 10.3 82 376-458 8-94 (99)
93 2cqp_A RNA-binding protein 12; 99.6 4.8E-15 1.6E-19 123.0 10.2 83 374-457 12-94 (98)
94 3ulh_A THO complex subunit 4; 99.6 9.2E-15 3.1E-19 123.4 12.0 80 375-456 27-106 (107)
95 2ywk_A Putative RNA-binding pr 99.6 6.4E-15 2.2E-19 121.4 10.8 81 374-456 13-93 (95)
96 1sjq_A Polypyrimidine tract-bi 99.6 2.9E-15 1E-19 123.6 8.6 79 551-640 13-93 (105)
97 2kxn_B Transformer-2 protein h 99.6 5E-15 1.7E-19 129.1 10.5 84 374-458 43-126 (129)
98 3s7r_A Heterogeneous nuclear r 99.6 8.9E-15 3E-19 118.4 11.2 79 375-455 9-87 (87)
99 1rk8_A CG8781-PA, CG8781-PA pr 99.6 8.1E-15 2.8E-19 134.1 11.8 136 323-459 11-153 (165)
100 2cq3_A RNA-binding protein 9; 99.6 2.9E-14 9.8E-19 119.4 14.2 84 374-460 12-95 (103)
101 1sjq_A Polypyrimidine tract-bi 99.6 4.8E-15 1.7E-19 122.3 9.2 78 376-459 15-93 (105)
102 1wex_A Hypothetical protein (r 99.6 1.6E-14 5.5E-19 120.2 12.4 81 373-459 11-92 (104)
103 2cqi_A Nucleolysin TIAR; RNA r 99.6 2.5E-14 8.4E-19 119.8 13.6 83 374-459 12-94 (103)
104 2dh8_A DAZ-associated protein 99.6 8.1E-15 2.8E-19 123.3 10.6 85 373-459 12-96 (105)
105 2cpe_A RNA-binding protein EWS 99.6 1.5E-14 5.1E-19 123.4 12.4 85 375-460 13-105 (113)
106 4a8x_A RNA-binding protein wit 99.6 9E-15 3.1E-19 118.7 10.4 81 377-458 4-85 (88)
107 2ek1_A RNA-binding protein 12; 99.6 3.6E-15 1.2E-19 123.0 8.2 81 375-456 13-93 (95)
108 1x4d_A Matrin 3; structural ge 99.6 1.1E-14 3.7E-19 120.3 10.7 79 375-459 13-93 (102)
109 2khc_A Testis-specific RNP-typ 99.6 8.5E-15 2.9E-19 126.0 10.5 82 374-456 37-118 (118)
110 2dgv_A HnRNP M, heterogeneous 99.6 1.3E-14 4.5E-19 118.7 11.0 82 375-459 6-87 (92)
111 2cq1_A PTB-like protein L; RRM 99.6 1.1E-14 3.8E-19 120.4 10.4 81 551-642 12-94 (101)
112 2fy1_A RNA-binding motif prote 99.6 2.4E-14 8.3E-19 122.4 12.9 82 377-460 7-88 (116)
113 2wbr_A GW182, gawky, LD47780P; 99.6 9.5E-15 3.2E-19 114.5 9.3 73 377-456 7-79 (89)
114 2dgw_A Probable RNA-binding pr 99.6 2.8E-14 9.6E-19 116.5 12.7 79 376-458 9-87 (91)
115 3ex7_B RNA-binding protein 8A; 99.6 1.1E-14 3.7E-19 127.0 10.6 84 375-459 20-103 (126)
116 1wex_A Hypothetical protein (r 99.6 1.3E-14 4.5E-19 120.8 10.4 80 551-641 12-93 (104)
117 3s8s_A Histone-lysine N-methyl 99.6 1.1E-14 3.9E-19 122.9 10.1 79 552-640 4-87 (110)
118 2cq1_A PTB-like protein L; RRM 99.6 2.4E-14 8.1E-19 118.5 11.7 79 374-459 12-92 (101)
119 1s79_A Lupus LA protein; RRM, 99.6 5.3E-15 1.8E-19 123.2 7.6 78 377-457 11-88 (103)
120 2ad9_A Polypyrimidine tract-bi 99.6 1.5E-14 5E-19 122.7 10.4 81 375-461 29-110 (119)
121 3ucg_A Polyadenylate-binding p 99.6 1.2E-14 4.2E-19 118.1 9.6 78 378-457 7-84 (89)
122 2cqg_A TDP-43, TAR DNA-binding 99.6 5.3E-14 1.8E-18 117.8 13.8 85 374-461 12-96 (103)
123 1u6f_A Tcubp1, RNA-binding pro 99.6 4.1E-14 1.4E-18 125.6 13.8 87 374-461 39-125 (139)
124 2dgx_A KIAA0430 protein; RRM d 99.6 2.4E-14 8.1E-19 118.1 11.3 79 377-459 9-91 (96)
125 2ad9_A Polypyrimidine tract-bi 99.6 8.9E-15 3E-19 124.0 8.9 81 551-642 28-110 (119)
126 2cpi_A CCR4-NOT transcription 99.6 2.1E-14 7.3E-19 121.8 11.4 83 376-459 14-102 (111)
127 1x4e_A RNA binding motif, sing 99.5 4.3E-15 1.5E-19 119.7 6.4 80 376-456 4-83 (85)
128 1jmt_A Splicing factor U2AF 35 99.5 1E-14 3.5E-19 121.7 8.6 84 554-637 1-104 (104)
129 2m2b_A RNA-binding protein 10; 99.5 7E-15 2.4E-19 128.9 8.0 86 373-459 19-109 (131)
130 3n9u_C Cleavage and polyadenyl 99.5 1.7E-14 5.8E-19 129.9 10.7 80 377-457 55-136 (156)
131 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 2.9E-14 1E-18 126.8 12.0 82 373-455 59-140 (140)
132 2lxi_A RNA-binding protein 10; 99.5 4.3E-15 1.5E-19 121.1 6.0 77 554-640 1-84 (91)
133 1p1t_A Cleavage stimulation fa 99.5 1.2E-14 4E-19 122.1 8.8 80 377-457 8-87 (104)
134 2mss_A Protein (musashi1); RNA 99.5 6.7E-15 2.3E-19 115.4 6.8 75 379-455 1-75 (75)
135 2dhg_A TRNA selenocysteine ass 99.5 1.7E-14 5.7E-19 121.1 9.7 82 376-459 8-91 (104)
136 1wg5_A Heterogeneous nuclear r 99.5 3.4E-14 1.2E-18 119.0 11.4 82 375-459 13-95 (104)
137 1x4d_A Matrin 3; structural ge 99.5 1.2E-14 4.1E-19 120.0 8.4 78 551-639 12-92 (102)
138 2jwn_A Embryonic polyadenylate 99.5 7.6E-15 2.6E-19 127.5 7.4 78 378-457 37-114 (124)
139 1wez_A HnRNP H', FTP-3, hetero 99.5 2.9E-14 1E-18 118.7 10.6 81 375-459 13-93 (102)
140 2kt5_A RNA and export factor-b 99.5 7.2E-14 2.5E-18 121.3 13.5 83 375-459 33-115 (124)
141 2dis_A Unnamed protein product 99.5 3.1E-14 1E-18 120.6 10.7 85 376-460 7-94 (109)
142 2j76_E EIF-4B, EIF4B, eukaryot 99.5 9.4E-15 3.2E-19 121.5 7.1 81 375-458 17-98 (100)
143 2cpy_A RNA-binding protein 12; 99.5 2.4E-14 8.2E-19 122.2 9.8 80 375-457 13-93 (114)
144 2err_A Ataxin-2-binding protei 99.5 3E-14 1E-18 120.5 10.2 82 374-458 26-107 (109)
145 1x4a_A Splicing factor, argini 99.5 7.7E-14 2.6E-18 118.1 12.8 82 374-459 19-100 (109)
146 1x5o_A RNA binding motif, sing 99.5 9.1E-14 3.1E-18 118.7 13.3 82 375-458 23-112 (114)
147 2cq4_A RNA binding motif prote 99.5 2.3E-14 7.8E-19 122.5 9.4 79 377-457 25-103 (114)
148 2fc9_A NCL protein; structure 99.5 1E-13 3.6E-18 115.5 13.1 81 374-459 12-92 (101)
149 1h2v_Z 20 kDa nuclear CAP bind 99.5 6.4E-14 2.2E-18 127.0 12.7 83 376-459 38-120 (156)
150 3mdf_A Peptidyl-prolyl CIS-tra 99.5 3.4E-14 1.2E-18 114.4 9.6 75 552-636 5-84 (85)
151 2x1f_A MRNA 3'-END-processing 99.5 4.3E-14 1.5E-18 116.7 10.2 79 553-641 1-84 (96)
152 2nlw_A Eukaryotic translation 99.5 3.5E-14 1.2E-18 119.2 9.7 80 376-458 14-100 (105)
153 2db1_A Heterogeneous nuclear r 99.5 4.8E-14 1.7E-18 120.9 10.7 78 376-456 16-96 (118)
154 2xnq_A Nuclear polyadenylated 99.5 6E-14 2E-18 115.8 10.8 76 551-639 19-95 (97)
155 1whx_A Hypothetical protein ri 99.5 2.8E-14 9.5E-19 121.0 9.0 80 553-643 9-88 (111)
156 1x4b_A Heterogeneous nuclear r 99.5 4.2E-14 1.4E-18 121.2 10.2 82 377-460 27-108 (116)
157 2dgu_A Heterogeneous nuclear r 99.5 1.3E-13 4.6E-18 115.2 13.0 78 375-461 9-86 (103)
158 2rs2_A Musashi-1, RNA-binding 99.5 4.7E-14 1.6E-18 119.2 10.3 81 376-458 24-104 (109)
159 2cqi_A Nucleolysin TIAR; RNA r 99.5 8.8E-14 3E-18 116.4 11.8 80 551-640 12-94 (103)
160 1why_A Hypothetical protein ri 99.5 5.1E-14 1.7E-18 116.4 10.2 78 551-639 14-93 (97)
161 3bs9_A Nucleolysin TIA-1 isofo 99.5 5.5E-14 1.9E-18 113.7 10.0 78 552-639 4-86 (87)
162 2dnz_A Probable RNA-binding pr 99.5 6.2E-14 2.1E-18 115.5 10.5 78 552-639 3-85 (95)
163 2a3j_A U1 small nuclear ribonu 99.5 3.7E-14 1.3E-18 122.6 9.5 81 374-458 26-110 (127)
164 2jvo_A Nucleolar protein 3; nu 99.5 3.8E-14 1.3E-18 119.4 9.3 77 550-639 27-103 (108)
165 1uaw_A Mouse-musashi-1; RNP-ty 99.5 1.2E-14 4.3E-19 114.5 5.8 76 378-455 1-76 (77)
166 2dnn_A RNA-binding protein 12; 99.5 5.7E-14 1.9E-18 117.9 10.0 76 377-456 16-91 (109)
167 1x4c_A Splicing factor, argini 99.5 1.4E-13 4.8E-18 116.2 12.5 76 376-459 14-94 (108)
168 1x4f_A Matrin 3; structural ge 99.5 3.5E-14 1.2E-18 118.9 8.6 80 375-460 23-104 (112)
169 2fc8_A NCL protein; structure 99.5 1.6E-13 5.6E-18 114.6 12.6 84 373-460 11-94 (102)
170 1x4a_A Splicing factor, argini 99.5 1.3E-13 4.5E-18 116.7 12.2 79 551-639 19-99 (109)
171 4a8x_A RNA-binding protein wit 99.5 5.3E-14 1.8E-18 114.1 9.3 77 553-639 3-85 (88)
172 2hgl_A HNRPF protein, heteroge 99.5 4E-14 1.4E-18 123.8 9.2 79 375-456 42-123 (136)
173 3pgw_S U1-70K; protein-RNA com 99.5 1.6E-14 5.4E-19 152.5 7.9 79 552-640 100-183 (437)
174 2ytc_A PRE-mRNA-splicing facto 99.5 7.6E-14 2.6E-18 112.3 10.1 77 373-456 8-85 (85)
175 3md1_A Nuclear and cytoplasmic 99.5 6.7E-14 2.3E-18 112.1 9.7 75 555-639 2-81 (83)
176 2e5h_A Zinc finger CCHC-type a 99.5 1.1E-13 3.9E-18 113.6 11.4 75 552-636 14-93 (94)
177 2cq3_A RNA-binding protein 9; 99.5 1.3E-13 4.6E-18 115.3 11.9 81 551-641 12-95 (103)
178 3ns6_A Eukaryotic translation 99.5 2E-14 7E-19 119.4 6.6 84 553-640 5-94 (100)
179 1why_A Hypothetical protein ri 99.5 1.4E-13 4.9E-18 113.7 11.7 77 375-458 15-93 (97)
180 2ki2_A SS-DNA binding protein 99.5 8.5E-15 2.9E-19 119.3 4.3 80 378-459 2-81 (90)
181 1whw_A Hypothetical protein ri 99.5 9.4E-14 3.2E-18 115.3 10.5 80 551-640 5-89 (99)
182 2cqc_A Arginine/serine-rich sp 99.5 7.8E-14 2.7E-18 114.9 10.0 78 551-638 12-94 (95)
183 2cph_A RNA binding motif prote 99.5 8.9E-14 3E-18 117.3 10.5 80 551-640 12-98 (107)
184 1x5u_A Splicing factor 3B subu 99.5 9.3E-14 3.2E-18 116.7 10.5 80 551-640 12-96 (105)
185 2cqb_A Peptidyl-prolyl CIS-tra 99.5 4.8E-14 1.6E-18 117.9 8.7 80 551-640 9-93 (102)
186 2do4_A Squamous cell carcinoma 99.5 1.2E-13 4.1E-18 114.9 11.0 79 551-639 14-96 (100)
187 2cpj_A Non-POU domain-containi 99.5 1.2E-13 4E-18 114.7 10.9 78 375-459 13-90 (99)
188 1x4c_A Splicing factor, argini 99.5 1.3E-13 4.3E-18 116.5 11.2 77 552-640 13-94 (108)
189 1x4f_A Matrin 3; structural ge 99.5 5.7E-14 2E-18 117.6 8.8 79 551-640 22-103 (112)
190 2cpz_A CUG triplet repeat RNA- 99.5 9.6E-14 3.3E-18 118.7 10.5 81 551-641 22-107 (115)
191 2a3j_A U1 small nuclear ribonu 99.5 7.7E-14 2.6E-18 120.5 9.9 85 551-641 26-112 (127)
192 2dnq_A RNA-binding protein 4B; 99.5 1.2E-13 4E-18 112.5 10.5 77 375-460 6-82 (90)
193 2err_A Ataxin-2-binding protei 99.5 6.2E-14 2.1E-18 118.5 9.1 79 551-639 26-107 (109)
194 2dgt_A RNA-binding protein 30; 99.5 1.3E-13 4.3E-18 112.8 10.7 77 551-640 7-83 (92)
195 2dgx_A KIAA0430 protein; RRM d 99.5 1.1E-13 3.8E-18 114.0 10.4 77 553-639 8-90 (96)
196 2jrs_A RNA-binding protein 39; 99.5 9.9E-14 3.4E-18 116.9 10.0 79 551-639 23-106 (108)
197 1x5t_A Splicing factor 3B subu 99.5 5.5E-14 1.9E-18 116.0 8.3 79 552-640 3-87 (96)
198 1x5s_A Cold-inducible RNA-bind 99.5 6.5E-14 2.2E-18 117.0 8.8 80 551-640 9-93 (102)
199 2jvr_A Nucleolar protein 3; RN 99.5 7.8E-14 2.7E-18 117.3 9.2 76 553-638 27-104 (111)
200 2d9p_A Polyadenylate-binding p 99.5 8.3E-14 2.8E-18 116.6 9.4 80 551-640 12-94 (103)
201 1nu4_A U1A RNA binding domain; 99.5 5.4E-14 1.9E-18 116.3 8.1 80 375-458 6-89 (97)
202 3s7r_A Heterogeneous nuclear r 99.5 3.4E-14 1.2E-18 114.9 6.7 80 216-351 7-86 (87)
203 2dnq_A RNA-binding protein 4B; 99.5 1.2E-13 4E-18 112.5 9.9 76 552-640 6-81 (90)
204 2krb_A Eukaryotic translation 99.5 2.5E-14 8.5E-19 113.9 5.7 72 378-452 2-80 (81)
205 3zzy_A Polypyrimidine tract-bi 99.5 1.1E-13 3.9E-18 118.6 10.1 80 556-645 30-112 (130)
206 2diu_A KIAA0430 protein; struc 99.5 1.6E-13 5.3E-18 108.6 10.0 76 376-462 7-88 (96)
207 2cpf_A RNA binding motif prote 99.5 7.3E-14 2.5E-18 115.8 8.6 79 552-640 3-89 (98)
208 2cpj_A Non-POU domain-containi 99.5 1E-13 3.4E-18 115.1 9.5 79 551-640 12-90 (99)
209 2dgt_A RNA-binding protein 30; 99.5 3.3E-13 1.1E-17 110.3 12.4 77 374-459 7-83 (92)
210 2dgs_A DAZ-associated protein 99.5 4.5E-14 1.5E-18 117.3 7.3 83 217-355 7-89 (99)
211 1s79_A Lupus LA protein; RRM, 99.5 3E-14 1E-18 118.7 6.1 81 217-354 8-88 (103)
212 2dgu_A Heterogeneous nuclear r 99.5 1.4E-13 4.9E-18 115.1 10.3 76 552-640 9-84 (103)
213 1p27_B RNA-binding protein 8A; 99.5 9.6E-14 3.3E-18 116.9 9.3 79 551-639 20-103 (106)
214 1x4g_A Nucleolysin TIAR; struc 99.5 1.2E-13 4.1E-18 116.8 10.0 79 551-640 22-100 (109)
215 3ex7_B RNA-binding protein 8A; 99.5 1E-13 3.6E-18 120.7 9.8 80 551-640 19-103 (126)
216 3p5t_L Cleavage and polyadenyl 99.5 2.8E-14 9.7E-19 116.1 5.7 79 221-355 2-83 (90)
217 1wel_A RNA-binding protein 12; 99.5 3.6E-14 1.2E-18 123.1 6.7 80 376-457 24-103 (124)
218 2cq0_A Eukaryotic translation 99.5 9.6E-14 3.3E-18 116.2 9.2 80 551-640 12-96 (103)
219 3ulh_A THO complex subunit 4; 99.5 1.3E-13 4.4E-18 116.3 10.0 76 552-637 27-106 (107)
220 2la6_A RNA-binding protein FUS 99.5 1.6E-13 5.5E-18 113.9 10.3 77 551-637 10-99 (99)
221 2ytc_A PRE-mRNA-splicing facto 99.5 1.5E-13 5.1E-18 110.6 9.8 75 551-636 9-84 (85)
222 2dnp_A RNA-binding protein 14; 99.5 1.5E-13 5.2E-18 111.8 9.9 75 552-639 7-81 (90)
223 1oo0_B CG8781-PA, drosophila Y 99.5 1.5E-13 5E-18 116.6 10.2 79 551-639 23-106 (110)
224 3lqv_A PRE-mRNA branch site pr 99.5 2.1E-13 7.3E-18 116.6 11.2 79 552-640 6-86 (115)
225 2lkz_A RNA-binding protein 5; 99.5 3E-14 1E-18 116.5 5.4 80 218-353 7-93 (95)
226 2khc_A Testis-specific RNP-typ 99.5 3.3E-13 1.1E-17 116.0 12.2 76 551-636 37-117 (118)
227 2ywk_A Putative RNA-binding pr 99.5 1.4E-13 4.8E-18 113.3 9.4 77 551-637 13-93 (95)
228 1x4h_A RNA-binding protein 28; 99.5 1.7E-13 6E-18 116.4 10.3 82 551-642 12-104 (111)
229 2diu_A KIAA0430 protein; struc 99.5 1.2E-13 4.2E-18 109.2 8.5 78 552-640 6-85 (96)
230 2la4_A Nuclear and cytoplasmic 99.5 6.5E-14 2.2E-18 116.8 7.4 76 552-638 25-100 (101)
231 2cq2_A Hypothetical protein LO 99.5 1.3E-13 4.4E-18 115.5 9.1 77 551-638 22-105 (114)
232 2hgn_A Heterogeneous nuclear r 99.5 2E-14 6.8E-19 126.1 4.4 79 377-459 46-124 (139)
233 2lmi_A GRSF-1, G-rich sequence 99.5 5E-14 1.7E-18 118.7 6.7 79 376-457 10-91 (107)
234 2dgv_A HnRNP M, heterogeneous 99.5 1.1E-13 3.9E-18 113.1 8.6 78 552-639 6-86 (92)
235 2jvo_A Nucleolar protein 3; nu 99.5 2E-13 6.8E-18 115.0 10.2 76 374-458 28-103 (108)
236 1wf1_A RNA-binding protein RAL 99.5 2.6E-13 8.7E-18 115.0 10.9 75 552-639 25-100 (110)
237 2cpi_A CCR4-NOT transcription 99.5 1.2E-13 4.1E-18 117.2 8.8 79 552-640 13-102 (111)
238 1nu4_A U1A RNA binding domain; 99.5 1.2E-13 4.3E-18 114.1 8.6 80 551-640 5-90 (97)
239 1iqt_A AUF1, heterogeneous nuc 99.5 3E-14 1E-18 111.7 4.6 75 379-455 1-75 (75)
240 2e5j_A Methenyltetrahydrofolat 99.5 2.1E-13 7E-18 112.7 9.9 78 552-639 17-94 (97)
241 2dh8_A DAZ-associated protein 99.5 1.3E-13 4.4E-18 115.8 8.7 85 215-355 11-95 (105)
242 2cpd_A Apobec-1 stimulating pr 99.5 3.5E-13 1.2E-17 111.8 11.2 77 551-640 12-90 (99)
243 2dnm_A SRP46 splicing factor; 99.5 1.2E-13 4E-18 115.7 8.3 83 217-355 10-93 (103)
244 1wi8_A EIF-4B, eukaryotic tran 99.5 1.9E-13 6.6E-18 114.5 9.6 77 552-640 13-95 (104)
245 2xnq_A Nuclear polyadenylated 99.5 3.7E-13 1.3E-17 111.0 11.2 75 374-457 19-94 (97)
246 2nlw_A Eukaryotic translation 99.5 1.5E-13 5.3E-18 115.2 9.0 84 552-639 13-100 (105)
247 2dnh_A Bruno-like 5, RNA bindi 99.5 2.8E-13 9.5E-18 113.8 10.5 80 551-640 12-98 (105)
248 2e44_A Insulin-like growth fac 99.5 2.5E-13 8.4E-18 112.1 10.0 79 375-458 13-92 (96)
249 2mss_A Protein (musashi1); RNA 99.5 4.3E-14 1.5E-18 110.7 5.1 75 222-352 1-75 (75)
250 1x4g_A Nucleolysin TIAR; struc 99.5 2.9E-13 1E-17 114.4 10.7 77 377-460 25-101 (109)
251 2j76_E EIF-4B, EIF4B, eukaryot 99.5 6E-14 2E-18 116.6 6.2 77 551-639 16-98 (100)
252 2fy1_A RNA-binding motif prote 99.5 2E-13 6.8E-18 116.7 9.7 80 552-641 5-88 (116)
253 3q2s_C Cleavage and polyadenyl 99.5 9.3E-14 3.2E-18 133.7 8.3 80 377-457 68-149 (229)
254 2dgo_A Cytotoxic granule-assoc 99.5 1.7E-13 5.9E-18 117.2 9.1 85 216-356 11-96 (115)
255 2e5j_A Methenyltetrahydrofolat 99.5 2.3E-13 8E-18 112.4 9.6 78 375-458 17-94 (97)
256 2hvz_A Splicing factor, argini 99.5 1.1E-13 3.8E-18 115.3 7.7 75 556-640 2-76 (101)
257 3lqv_A PRE-mRNA branch site pr 99.5 2.3E-13 7.8E-18 116.4 9.8 78 376-457 7-84 (115)
258 2cq4_A RNA binding motif prote 99.5 5.2E-14 1.8E-18 120.2 5.7 86 217-358 22-107 (114)
259 2jvr_A Nucleolar protein 3; RN 99.4 1.9E-13 6.5E-18 114.9 8.8 76 377-457 28-104 (111)
260 2f3j_A RNA and export factor b 99.4 2E-13 6.7E-18 125.8 9.7 80 376-457 87-166 (177)
261 1whx_A Hypothetical protein ri 99.4 1.4E-13 4.9E-18 116.6 8.0 75 377-458 10-84 (111)
262 2cpx_A Hypothetical protein FL 99.4 7.2E-14 2.5E-18 119.6 6.1 84 376-460 24-107 (115)
263 2dnp_A RNA-binding protein 14; 99.4 5.5E-13 1.9E-17 108.5 11.1 75 376-459 8-82 (90)
264 2cpd_A Apobec-1 stimulating pr 99.4 1.1E-12 3.6E-17 108.9 13.0 76 375-459 13-90 (99)
265 1wf1_A RNA-binding protein RAL 99.4 2.8E-13 9.7E-18 114.8 9.6 73 376-457 26-99 (110)
266 2kvi_A Nuclear polyadenylated 99.4 1.5E-13 5.2E-18 113.2 7.7 76 551-639 7-83 (96)
267 2la4_A Nuclear and cytoplasmic 99.4 2.2E-13 7.6E-18 113.5 8.8 74 377-457 27-100 (101)
268 2j8a_A Histone-lysine N-methyl 99.4 2E-13 6.7E-18 114.4 8.3 78 378-456 3-94 (136)
269 2hvz_A Splicing factor, argini 99.4 2.1E-13 7.1E-18 113.7 8.5 76 378-459 1-76 (101)
270 2do0_A HnRNP M, heterogeneous 99.4 3.1E-13 1E-17 115.4 9.8 79 551-639 12-94 (114)
271 1p1t_A Cleavage stimulation fa 99.4 8.7E-14 3E-18 116.7 6.1 78 553-640 7-89 (104)
272 2kt5_A RNA and export factor-b 99.4 4E-13 1.4E-17 116.5 10.5 79 552-640 33-115 (124)
273 1fj7_A Nucleolin RBD1, protein 99.4 4.5E-14 1.6E-18 117.7 4.3 81 376-459 16-96 (101)
274 2dng_A Eukaryotic translation 99.4 1E-13 3.4E-18 116.1 6.4 85 214-355 9-93 (103)
275 3ucg_A Polyadenylate-binding p 99.4 1.3E-13 4.6E-18 111.9 6.9 80 219-354 5-84 (89)
276 1fjc_A Nucleolin RBD2, protein 99.4 3.4E-13 1.2E-17 111.2 9.4 78 376-459 15-92 (96)
277 2cpy_A RNA-binding protein 12; 99.4 1E-13 3.5E-18 118.2 6.2 85 216-357 11-96 (114)
278 2pe8_A Splicing factor 45; RRM 99.4 5.5E-13 1.9E-17 111.1 10.5 81 376-457 7-93 (105)
279 1sjr_A Polypyrimidine tract-bi 99.4 4.6E-13 1.6E-17 119.3 10.6 76 556-641 48-126 (164)
280 2xs2_A Deleted in azoospermia- 99.4 1.4E-13 4.7E-18 115.0 6.7 79 377-459 9-87 (102)
281 3zzy_A Polypyrimidine tract-bi 99.4 6.4E-13 2.2E-17 113.9 11.0 75 378-458 29-106 (130)
282 2e5i_A Heterogeneous nuclear r 99.4 7.3E-13 2.5E-17 113.2 11.2 79 552-641 21-104 (124)
283 2lea_A Serine/arginine-rich sp 99.4 1E-13 3.4E-18 121.9 6.0 77 553-639 46-127 (135)
284 2dgp_A Bruno-like 4, RNA bindi 99.4 1.7E-13 5.7E-18 115.4 7.1 85 215-355 8-96 (106)
285 2dha_A FLJ20171 protein; RRM d 99.4 1.6E-13 5.5E-18 117.7 7.1 77 377-456 23-103 (123)
286 1iqt_A AUF1, heterogeneous nuc 99.4 1E-13 3.5E-18 108.6 5.2 74 222-351 1-74 (75)
287 2div_A TRNA selenocysteine ass 99.4 2.2E-13 7.4E-18 113.1 7.4 81 217-353 6-92 (99)
288 2cqh_A IGF-II mRNA-binding pro 99.4 1.9E-13 6.6E-18 112.0 7.0 77 552-640 6-84 (93)
289 2dhg_A TRNA selenocysteine ass 99.4 3.9E-13 1.3E-17 112.7 9.0 82 217-355 6-90 (104)
290 2kvi_A Nuclear polyadenylated 99.4 3.5E-13 1.2E-17 111.1 8.5 76 375-459 8-84 (96)
291 2cq2_A Hypothetical protein LO 99.4 3.1E-13 1.1E-17 113.2 8.2 75 376-457 24-105 (114)
292 2m2b_A RNA-binding protein 10; 99.4 2.5E-13 8.7E-18 118.9 8.1 82 217-355 20-108 (131)
293 1u6f_A Tcubp1, RNA-binding pro 99.4 6E-13 2E-17 118.0 10.6 80 551-640 39-123 (139)
294 2cqh_A IGF-II mRNA-binding pro 99.4 4.5E-13 1.5E-17 109.7 9.1 76 376-459 7-84 (93)
295 1rk8_A CG8781-PA, CG8781-PA pr 99.4 4E-13 1.4E-17 122.8 9.6 80 551-640 69-153 (165)
296 2hgm_A HNRPF protein, heteroge 99.4 2.8E-13 9.6E-18 116.4 8.0 78 376-457 41-120 (126)
297 1wg1_A KIAA1579 protein, homol 99.4 3.3E-13 1.1E-17 109.2 8.0 78 553-642 4-81 (88)
298 2kxn_B Transformer-2 protein h 99.4 2.3E-13 7.9E-18 118.5 7.5 85 215-355 41-126 (129)
299 2cqd_A RNA-binding region cont 99.4 4.1E-13 1.4E-17 115.0 8.8 84 215-355 12-96 (116)
300 1x4e_A RNA binding motif, sing 99.4 1.3E-13 4.4E-18 110.9 5.2 79 218-352 3-82 (85)
301 2cpx_A Hypothetical protein FL 99.4 5.4E-13 1.9E-17 114.1 9.5 80 551-640 22-106 (115)
302 2cqp_A RNA-binding protein 12; 99.4 2.1E-13 7.3E-18 112.9 6.4 77 552-638 13-94 (98)
303 2lmi_A GRSF-1, G-rich sequence 99.4 2.2E-13 7.5E-18 114.7 6.6 83 217-356 8-93 (107)
304 2ek1_A RNA-binding protein 12; 99.4 1.7E-13 5.7E-18 112.9 5.7 77 552-638 13-94 (95)
305 2lcw_A RNA-binding protein FUS 99.1 2E-14 6.8E-19 123.2 0.0 83 376-459 6-96 (116)
306 1h2v_Z 20 kDa nuclear CAP bind 99.4 6.6E-13 2.3E-17 120.2 10.1 78 552-639 37-119 (156)
307 2e44_A Insulin-like growth fac 99.4 7E-13 2.4E-17 109.3 9.3 79 552-640 13-93 (96)
308 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 1.1E-12 3.6E-17 116.6 11.0 76 551-636 60-140 (140)
309 1wez_A HnRNP H', FTP-3, hetero 99.4 2.2E-13 7.4E-18 113.4 5.9 80 216-353 11-90 (102)
310 1x5p_A Negative elongation fac 99.4 1.5E-12 5.2E-17 107.4 11.1 78 552-642 13-90 (97)
311 2db1_A Heterogeneous nuclear r 99.4 2.5E-13 8.6E-18 116.4 6.3 83 217-356 14-99 (118)
312 2rs2_A Musashi-1, RNA-binding 99.4 9E-13 3.1E-17 111.2 9.5 79 551-640 22-105 (109)
313 2dis_A Unnamed protein product 99.4 6.7E-13 2.3E-17 112.3 8.7 79 552-640 6-93 (109)
314 1x4b_A Heterogeneous nuclear r 99.4 5.6E-13 1.9E-17 114.1 8.3 78 552-640 25-107 (116)
315 1fjc_A Nucleolin RBD2, protein 99.4 5.4E-13 1.8E-17 110.0 7.9 78 552-639 14-91 (96)
316 1wg5_A Heterogeneous nuclear r 99.4 3.2E-13 1.1E-17 113.1 6.5 82 216-354 11-93 (104)
317 1wg1_A KIAA1579 protein, homol 99.4 1.6E-12 5.6E-17 105.1 10.4 75 377-459 5-79 (88)
318 2cpe_A RNA-binding protein EWS 99.4 3.7E-13 1.3E-17 114.7 6.9 84 216-355 11-103 (113)
319 2fc9_A NCL protein; structure 99.4 1E-12 3.5E-17 109.5 9.3 80 551-640 12-92 (101)
320 1wel_A RNA-binding protein 12; 99.4 1.9E-13 6.4E-18 118.6 5.0 85 216-356 21-105 (124)
321 2cqg_A TDP-43, TAR DNA-binding 99.4 5.2E-13 1.8E-17 111.7 7.6 83 216-355 11-93 (103)
322 3d2w_A TAR DNA-binding protein 99.4 2E-12 6.7E-17 104.6 10.6 74 376-458 10-84 (89)
323 1x5p_A Negative elongation fac 99.4 4.2E-12 1.4E-16 104.8 12.6 75 376-459 14-88 (97)
324 2ki2_A SS-DNA binding protein 99.4 2.2E-13 7.6E-18 110.8 4.8 78 221-355 2-80 (90)
325 3n9u_C Cleavage and polyadenyl 99.4 3.3E-13 1.1E-17 121.5 6.4 81 219-355 54-137 (156)
326 2dnn_A RNA-binding protein 12; 99.4 1.4E-12 4.6E-17 109.5 9.7 78 554-643 16-97 (109)
327 3egn_A RNA-binding protein 40; 99.4 1E-12 3.5E-17 117.0 9.5 84 375-459 43-131 (143)
328 2e5g_A U6 snRNA-specific termi 99.4 2E-12 6.7E-17 106.1 10.4 76 377-459 8-83 (94)
329 3beg_B Splicing factor, argini 99.4 7.6E-13 2.6E-17 112.9 7.9 74 553-638 15-93 (115)
330 2dnl_A Cytoplasmic polyadenyla 99.4 1.4E-12 4.9E-17 111.1 9.4 76 377-456 8-86 (114)
331 2dgw_A Probable RNA-binding pr 99.4 1.6E-12 5.4E-17 106.0 9.3 76 552-639 8-87 (91)
332 2e5i_A Heterogeneous nuclear r 99.4 3.3E-12 1.1E-16 109.1 11.5 75 378-459 26-103 (124)
333 1uaw_A Mouse-musashi-1; RNP-ty 99.4 5.5E-13 1.9E-17 105.0 6.0 76 221-352 1-76 (77)
334 1x5o_A RNA binding motif, sing 99.4 1.5E-12 5.2E-17 111.0 9.2 78 552-639 23-112 (114)
335 2krb_A Eukaryotic translation 99.4 5.8E-13 2E-17 105.9 6.2 73 220-350 1-81 (81)
336 1sjr_A Polypyrimidine tract-bi 99.4 1.3E-12 4.5E-17 116.4 9.0 76 378-458 47-124 (164)
337 2hgm_A HNRPF protein, heteroge 99.4 8.4E-13 2.9E-17 113.4 7.5 81 217-355 39-121 (126)
338 2hgl_A HNRPF protein, heteroge 99.4 3.8E-13 1.3E-17 117.5 5.4 83 217-356 41-126 (136)
339 3d2w_A TAR DNA-binding protein 99.4 2.2E-12 7.6E-17 104.3 9.5 76 551-640 8-85 (89)
340 3v4m_A Splicing factor U2AF 65 99.4 2E-12 7E-17 107.8 9.1 82 375-457 3-96 (105)
341 2f3j_A RNA and export factor b 99.4 1.9E-12 6.6E-17 119.2 9.7 80 551-640 85-168 (177)
342 3beg_B Splicing factor, argini 99.3 1.4E-12 4.7E-17 111.3 7.6 72 377-456 16-92 (115)
343 2jwn_A Embryonic polyadenylate 99.3 6.8E-13 2.3E-17 115.1 5.6 79 219-353 35-113 (124)
344 3egn_A RNA-binding protein 40; 99.3 3.3E-12 1.1E-16 113.7 10.1 78 551-638 42-129 (143)
345 2dha_A FLJ20171 protein; RRM d 99.3 7.4E-13 2.5E-17 113.6 5.6 81 219-356 22-106 (123)
346 2e5g_A U6 snRNA-specific termi 99.3 2.1E-12 7.2E-17 105.9 8.1 81 552-643 6-86 (94)
347 2xs2_A Deleted in azoospermia- 99.3 1E-12 3.5E-17 109.6 6.2 80 217-354 6-85 (102)
348 1fj7_A Nucleolin RBD1, protein 99.3 3E-13 1E-17 112.7 2.6 81 217-354 14-94 (101)
349 2fc8_A NCL protein; structure 99.3 3.9E-12 1.3E-16 106.1 9.2 80 551-640 12-93 (102)
350 2hzc_A Splicing factor U2AF 65 99.3 3.7E-12 1.3E-16 102.8 8.7 72 552-635 4-86 (87)
351 2bz2_A Negative elongation fac 99.3 3.5E-12 1.2E-16 109.6 8.6 77 552-641 37-113 (121)
352 1wf0_A TDP-43, TAR DNA-binding 99.3 2.6E-12 8.7E-17 104.0 7.3 76 377-460 5-80 (88)
353 2hzc_A Splicing factor U2AF 65 99.3 3.4E-12 1.2E-16 103.0 8.0 70 377-454 6-86 (87)
354 3q2s_C Cleavage and polyadenyl 99.3 2.1E-12 7.3E-17 124.2 7.4 81 219-355 67-150 (229)
355 2hgn_A Heterogeneous nuclear r 99.3 7.5E-13 2.6E-17 116.1 3.7 80 217-354 43-122 (139)
356 3ue2_A Poly(U)-binding-splicin 99.3 7.7E-12 2.6E-16 106.3 9.6 79 377-456 20-107 (118)
357 2voo_A Lupus LA protein; RNA-b 99.3 7.4E-12 2.5E-16 117.1 10.4 79 377-458 109-187 (193)
358 1wf0_A TDP-43, TAR DNA-binding 99.3 2.6E-12 9E-17 103.9 6.1 78 552-641 3-80 (88)
359 2bz2_A Negative elongation fac 99.3 8.3E-12 2.8E-16 107.2 9.4 75 376-459 38-112 (121)
360 2lcw_A RNA-binding protein FUS 98.9 3.3E-13 1.1E-17 115.6 0.0 85 218-358 5-98 (116)
361 2dit_A HIV TAT specific factor 99.3 2.8E-11 9.6E-16 102.6 11.7 80 375-459 13-103 (112)
362 3u1l_A PRE-mRNA-splicing facto 99.3 6.2E-12 2.1E-16 120.0 8.3 79 375-460 132-231 (240)
363 2j8a_A Histone-lysine N-methyl 99.3 6E-12 2E-16 105.5 6.8 76 221-352 3-93 (136)
364 3u1l_A PRE-mRNA-splicing facto 99.2 1.4E-11 4.9E-16 117.5 8.5 85 552-639 132-229 (240)
365 3dxb_A Thioredoxin N-terminall 99.2 2E-11 6.7E-16 117.5 9.6 88 552-644 122-218 (222)
366 2dnr_A Synaptojanin-1; RRM dom 99.2 3.8E-11 1.3E-15 94.1 9.2 83 551-639 4-86 (91)
367 1jmt_A Splicing factor U2AF 35 99.2 8.4E-12 2.9E-16 103.9 4.3 72 382-455 20-103 (104)
368 3s6e_A RNA-binding protein 39; 99.2 1.3E-10 4.6E-15 97.8 10.3 76 376-456 6-91 (114)
369 2d9o_A DNAJ (HSP40) homolog, s 99.2 1.6E-10 5.3E-15 94.9 10.3 61 578-640 31-91 (100)
370 2dnl_A Cytoplasmic polyadenyla 99.2 2E-11 6.8E-16 103.9 4.8 48 217-265 5-55 (114)
371 3tht_A Alkylated DNA repair pr 99.1 1.5E-10 5.3E-15 116.6 9.6 78 551-637 15-97 (345)
372 2d9o_A DNAJ (HSP40) homolog, s 99.1 6.5E-10 2.2E-14 91.2 10.6 74 378-459 11-91 (100)
373 2voo_A Lupus LA protein; RNA-b 99.1 1.1E-10 3.8E-15 109.0 5.9 78 219-353 108-185 (193)
374 3tht_A Alkylated DNA repair pr 99.0 8.7E-10 3E-14 111.1 9.3 76 374-456 15-97 (345)
375 1ufw_A Synaptojanin 2; RNP dom 99.0 9.3E-10 3.2E-14 86.6 6.9 79 550-638 11-94 (95)
376 1owx_A Lupus LA protein, SS-B, 98.9 6.7E-09 2.3E-13 87.3 9.8 79 551-640 15-97 (121)
377 2dnr_A Synaptojanin-1; RRM dom 98.8 2.5E-08 8.5E-13 78.2 8.7 76 373-458 3-86 (91)
378 1owx_A Lupus LA protein, SS-B, 98.8 3.7E-08 1.3E-12 82.8 9.8 78 373-456 14-94 (121)
379 3dxb_A Thioredoxin N-terminall 98.6 2.5E-07 8.7E-12 88.6 11.1 67 389-456 141-211 (222)
380 1ufw_A Synaptojanin 2; RNP dom 98.5 1.6E-07 5.4E-12 73.9 5.8 76 371-456 9-93 (95)
381 2l9w_A U4/U6 snRNA-associated- 98.4 5.7E-07 2E-11 71.9 8.1 74 554-638 21-99 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.2 4.3E-06 1.5E-10 66.9 8.6 72 378-456 22-98 (117)
383 1wey_A Calcipressin 1; structu 97.7 0.00011 3.9E-09 58.8 7.3 79 555-639 6-84 (104)
384 3p3d_A Nucleoporin 53; structu 97.1 0.00062 2.1E-08 56.9 5.5 78 555-644 8-104 (132)
385 1wwh_A Nucleoporin 35, nucleop 97.1 0.003 1E-07 52.1 9.2 72 554-638 24-96 (119)
386 1whv_A Poly(A)-specific ribonu 96.9 0.0073 2.5E-07 47.5 9.2 54 378-440 17-70 (100)
387 1uw4_A UPF3X; nonsense mediate 96.7 0.0084 2.9E-07 47.2 8.7 69 378-446 2-72 (91)
388 1wey_A Calcipressin 1; structu 96.7 0.003 1E-07 50.6 6.1 72 378-456 6-82 (104)
389 1whv_A Poly(A)-specific ribonu 96.6 0.0062 2.1E-07 47.9 7.4 57 552-622 14-70 (100)
390 2dhx_A Poly (ADP-ribose) polym 96.4 0.02 6.8E-07 45.6 9.1 70 377-456 8-82 (104)
391 1wwh_A Nucleoporin 35, nucleop 96.3 0.018 6.1E-07 47.5 8.4 71 378-457 25-96 (119)
392 3ctr_A Poly(A)-specific ribonu 96.2 0.0047 1.6E-07 48.7 4.6 55 554-622 6-60 (101)
393 2dhx_A Poly (ADP-ribose) polym 96.0 0.051 1.7E-06 43.3 9.6 74 553-640 7-85 (104)
394 3ctr_A Poly(A)-specific ribonu 95.8 0.012 4.1E-07 46.4 5.0 54 378-440 7-60 (101)
395 2l08_A Regulator of nonsense t 95.7 0.033 1.1E-06 44.0 7.2 79 377-455 9-93 (97)
396 1uw4_A UPF3X; nonsense mediate 95.6 0.071 2.4E-06 41.9 8.8 74 555-638 2-87 (91)
397 3p3d_A Nucleoporin 53; structu 93.8 0.079 2.7E-06 44.3 5.2 76 378-456 8-97 (132)
398 2l08_A Regulator of nonsense t 92.4 0.32 1.1E-05 38.5 6.5 74 554-637 9-94 (97)
399 3pq1_A Poly(A) RNA polymerase; 91.6 0.09 3.1E-06 54.7 3.3 53 378-436 54-106 (464)
400 3pq1_A Poly(A) RNA polymerase; 89.9 0.17 5.7E-06 52.7 3.3 55 555-620 54-108 (464)
401 3d45_A Poly(A)-specific ribonu 74.6 10 0.00036 40.0 9.5 55 378-441 441-495 (507)
402 3d45_A Poly(A)-specific ribonu 67.2 12 0.0004 39.7 7.8 55 554-622 440-494 (507)
403 4eyt_A Telomerase associated p 54.4 68 0.0023 24.3 9.1 71 377-455 12-88 (129)
404 4eyt_A Telomerase associated p 39.3 1.2E+02 0.0042 22.9 8.2 74 553-639 11-92 (129)
405 3lpe_A Putative transcription 38.8 75 0.0026 24.5 6.2 46 579-624 27-73 (92)
406 2g0c_A ATP-dependent RNA helic 33.1 60 0.0021 23.8 4.7 43 590-636 32-74 (76)
407 4e8u_A Putative uncharacterize 29.4 56 0.0019 28.6 4.4 86 556-643 14-118 (172)
408 2exu_A Transcription initiatio 23.3 85 0.0029 28.3 4.6 50 591-644 139-188 (200)
409 3h7h_B Transcription elongatio 22.0 88 0.003 24.9 4.0 52 590-643 40-91 (106)
410 4e8u_A Putative uncharacterize 20.5 1.7E+02 0.006 25.5 5.8 60 378-441 13-84 (172)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=4.7e-38 Score=317.79 Aligned_cols=240 Identities=24% Similarity=0.309 Sum_probs=213.5
Q ss_pred CCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecccc
Q 006380 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVGM 298 (647)
Q Consensus 219 ~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (647)
..++|||+|||+.+|+++|.++|++|| |..+.+ +.++|||
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~a--------------------------------- 60 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTA--------------------------------- 60 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEE---------------------------------
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEE---------------------------------
Confidence 568999999999999999999999999 888887 4567888
Q ss_pred eEeecCCccccccCCcccccceeeEEecCCcCHHHHH-HhcCccccCccccCCCChhhhhhhcccccCCCCCCCCCCCCC
Q 006380 299 VFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAID 377 (647)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al-~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (647)
||+|.+.++|..|+ .++|..+.|..|.|.++. ..
T Consensus 61 -----------------------fV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~----------------------~~ 95 (284)
T 3smz_A 61 -----------------------FVTLLNGEQAEAAINAFHQSRLRERELSVQLQP----------------------TD 95 (284)
T ss_dssp -----------------------EEEESSHHHHHHHHHHHTTCEETTEECEEEECC----------------------CS
T ss_pred -----------------------EEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC----------------------CC
Confidence 99999999999999 599999999999997632 22
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecC
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 457 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~ 457 (647)
.+|||+|||+.+++++|.++|+.||.|..|.++.+..+|.++|||||+|.+.++|..|+..|+|. .|.|+.|.|.++.+
T Consensus 96 ~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~-~~~g~~i~v~~a~~ 174 (284)
T 3smz_A 96 ALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGK-PLGPRTLYVHWTDA 174 (284)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEECCG
T ss_pred CEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCC-EeCCcEEEEEECCC
Confidence 79999999999999999999999999999999999889999999999999999999999999996 79999999999863
Q ss_pred CCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCCCCCCCC
Q 006380 458 HVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPAV 537 (647)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (647)
.....
T Consensus 175 ~~~~~--------------------------------------------------------------------------- 179 (284)
T 3smz_A 175 GQLTP--------------------------------------------------------------------------- 179 (284)
T ss_dssp GGCCT---------------------------------------------------------------------------
T ss_pred CCCCc---------------------------------------------------------------------------
Confidence 11000
Q ss_pred CCCCcccccccccCCCCceEEecCcCCCCCC-CCchhhhhhHHHHHHHhhccCCeEEEEEecC----CCceEEEEeCCHH
Q 006380 538 TAPVIPNMAAEFIGSPSECLLLKNMFDPAME-TDPDFDLEIQGDVEEECSKYGRVKHIYVDKR----SAGFVYLRFESTE 612 (647)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~-~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~----~~g~afV~F~~~~ 612 (647)
...+..+|+|.|| |..+ + +++|.++|+.||.|..|.|..+ ++|+|||+|.+.+
T Consensus 180 ------------~~~~~~~l~v~nl--p~~~~~--------~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~ 237 (284)
T 3smz_A 180 ------------ALLHSRCLCVDRL--PPGFND--------VDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAE 237 (284)
T ss_dssp ------------TTTSCSEEEEECC--CTTCCC--------HHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHH
T ss_pred ------------ccCCccEEEEecC--CcccCC--------HHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHH
Confidence 0134568999999 8885 5 7999999999999999998654 4789999999999
Q ss_pred HHHHHHHHhcCcccCCeEEEEEEcChhhh
Q 006380 613 AAASAQRAMHMRWFARRLISAIFMKPEDY 641 (647)
Q Consensus 613 ~A~~A~~~l~g~~~~Gr~l~v~~~~~~~~ 641 (647)
+|.+|+..|||..|.|+.|.|.|+.+...
T Consensus 238 ~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 238 MAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred HHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 99999999999999999999999988764
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=4.1e-38 Score=319.56 Aligned_cols=246 Identities=18% Similarity=0.287 Sum_probs=208.2
Q ss_pred CCCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecc
Q 006380 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEV 296 (647)
Q Consensus 217 ~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (647)
.+..++|||+|||+.+|+++|.++|++||.|..|.|+.+..+ ++|||
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~a------------------------------- 84 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFA------------------------------- 84 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEE-------------------------------
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEE-------------------------------
Confidence 457899999999999999999999999999999999998754 46888
Q ss_pred cceEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCChhhhhhhcccccCCCCCCCCCCCC
Q 006380 297 GMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAI 376 (647)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (647)
||+|.+.++|..|+.++|..+.|+.|.|.++.
T Consensus 85 -------------------------fV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~----------------------- 116 (292)
T 2ghp_A 85 -------------------------RIEFARYDGALAAITKTHKVVGQNEIIVSHLT----------------------- 116 (292)
T ss_dssp -------------------------EEEESSHHHHHHHHTTTTCEETTEECEEEECC-----------------------
T ss_pred -------------------------EEEECCHHHHHHHHHhCCcEeCCcEEEEEECC-----------------------
Confidence 99999999999999999999999999997641
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCC-CeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEee
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFG-PVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 455 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~ 455 (647)
..+|||+|||+.+++++|.++|+.|| .|..|.|+.+. .+.++|||||+|.+.++|.+|+..|+|. .|.|+.|.|.++
T Consensus 117 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~a 194 (292)
T 2ghp_A 117 ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGL-KIEGYTLVTKVS 194 (292)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTC-EETTEECEEEEC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCC-EeCCcEEEEEEC
Confidence 38999999999999999999999999 99999999887 4888999999999999999999999996 799999999998
Q ss_pred cCCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCCCCCC
Q 006380 456 TDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVP 535 (647)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (647)
.+.......
T Consensus 195 ~~~~~~~~~----------------------------------------------------------------------- 203 (292)
T 2ghp_A 195 NPLEKSKRT----------------------------------------------------------------------- 203 (292)
T ss_dssp CCC-----------------------------------------------------------------------------
T ss_pred CCCcccccc-----------------------------------------------------------------------
Confidence 742211000
Q ss_pred CCCCCCcccccccccCCCCceEEecCcCCCCC-CCCchhhhhhHHHHHHHhhccCCeEEEEEecC------CCceEEEEe
Q 006380 536 AVTAPVIPNMAAEFIGSPSECLLLKNMFDPAM-ETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR------SAGFVYLRF 608 (647)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~-~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~------~~g~afV~F 608 (647)
.....+..+|+|.|| |.. ++ +++|.++|++||.|..|.|..+ ++|+|||+|
T Consensus 204 ------------~~~~~~~~~l~v~nl--p~~~~t--------~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F 261 (292)
T 2ghp_A 204 ------------DSATLEGREIMIRNL--STELLD--------ENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVF 261 (292)
T ss_dssp ---------------CCTTTEEEEEEE--CTTTCC--------HHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEE
T ss_pred ------------cccCCCCceEEEECC--CcccCC--------HHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEe
Confidence 001244578999999 888 77 7999999999999999999643 478999999
Q ss_pred CCHHHHHHHHHHhcCcccCCeEEEEEEcChh
Q 006380 609 ESTEAAASAQRAMHMRWFARRLISAIFMKPE 639 (647)
Q Consensus 609 ~~~~~A~~A~~~l~g~~~~Gr~l~v~~~~~~ 639 (647)
.+.++|.+|+ .|||..|.|+.|.|.|+.+.
T Consensus 262 ~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 262 ENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp SSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred CCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 9999999999 99999999999999998864
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.96 E-value=6.1e-29 Score=239.20 Aligned_cols=170 Identities=26% Similarity=0.414 Sum_probs=148.8
Q ss_pred CCCCCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeee
Q 006380 215 DPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVA 294 (647)
Q Consensus 215 ~~~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (647)
.+..+.++|||+|||+.+|+++|.++|++||.|.+|+|+.++.++.++|||
T Consensus 10 ~p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~a----------------------------- 60 (213)
T 4f02_A 10 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYA----------------------------- 60 (213)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEE-----------------------------
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccc-----------------------------
Confidence 344567899999999999999999999999999999999999999999999
Q ss_pred cccceEeecCCccccccCCcccccceeeEEecCCcCHHHHH-HhcCccccCccccCCCChhhhhhhcccccCCCCCCCCC
Q 006380 295 EVGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPY 373 (647)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al-~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 373 (647)
||+|.+.++|..|+ .+++..+.|+.+.+.++..........
T Consensus 61 ---------------------------fV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~~~~----------- 102 (213)
T 4f02_A 61 ---------------------------YVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSG----------- 102 (213)
T ss_dssp ---------------------------EEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHHHHC-----------
T ss_pred ---------------------------cceeCCHHHHHHHHHHhhhhhcCCcccccccccccccccccc-----------
Confidence 99999999999999 599999999999887654332222111
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEE
Q 006380 374 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 453 (647)
Q Consensus 374 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~ 453 (647)
..+|||+|||+.+++++|+++|+.||.|..|.|+.+. +.++|||||+|.+.++|.+||+.|||. .|+|+.|.|.
T Consensus 103 ---~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~-~~~g~~i~V~ 176 (213)
T 4f02_A 103 ---VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGM-LLNDRKVFVG 176 (213)
T ss_dssp ---TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEE
T ss_pred ---cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCC-EECCEEEEEE
Confidence 2689999999999999999999999999999999884 558999999999999999999999996 7999999999
Q ss_pred eecC
Q 006380 454 SVTD 457 (647)
Q Consensus 454 ~~~~ 457 (647)
++.+
T Consensus 177 ~a~~ 180 (213)
T 4f02_A 177 RFKS 180 (213)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 9874
No 4
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.96 E-value=1.4e-28 Score=236.68 Aligned_cols=166 Identities=25% Similarity=0.337 Sum_probs=146.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEee
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 455 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~ 455 (647)
+.++|||+|||+.+++++|+++|++||.|.+|.|+++..++.++|||||+|.+.++|.+||..+++. .+.|+.|.|.++
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~-~~~g~~i~~~~~ 92 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFD-VIKGKPVRIMWS 92 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhh-hcCCcccccccc
Confidence 4589999999999999999999999999999999999989999999999999999999999999996 699999999887
Q ss_pred cCCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCCCCCC
Q 006380 456 TDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVP 535 (647)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (647)
......
T Consensus 93 ~~~~~~-------------------------------------------------------------------------- 98 (213)
T 4f02_A 93 QRDPSL-------------------------------------------------------------------------- 98 (213)
T ss_dssp CCCTHH--------------------------------------------------------------------------
T ss_pred cccccc--------------------------------------------------------------------------
Confidence 521000
Q ss_pred CCCCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC---CCceEEEEeCCHH
Q 006380 536 AVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR---SAGFVYLRFESTE 612 (647)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~---~~g~afV~F~~~~ 612 (647)
......+|+|.|| |..++ +++|.++|++||.|+.|.|..+ ++|+|||+|.+.+
T Consensus 99 --------------~~~~~~~l~v~nl--~~~~t--------~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~ 154 (213)
T 4f02_A 99 --------------RKSGVGNIFIKNL--DKSID--------NKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 154 (213)
T ss_dssp --------------HHHCTTEEEEESC--CTTCC--------HHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHH
T ss_pred --------------cccccccceECCc--ccccH--------HHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHH
Confidence 0012347999999 88888 7999999999999999988643 4899999999999
Q ss_pred HHHHHHHHhcCcccCCeEEEEEEcChhh
Q 006380 613 AAASAQRAMHMRWFARRLISAIFMKPED 640 (647)
Q Consensus 613 ~A~~A~~~l~g~~~~Gr~l~v~~~~~~~ 640 (647)
+|.+|++.|||..|+|+.|.|.++.+..
T Consensus 155 ~a~~Ai~~lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 155 AAERAIEKMNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCCHH
T ss_pred HHHHHHHHhCCCEECCEEEEEEEcCCCc
Confidence 9999999999999999999999997753
No 5
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=5.5e-27 Score=236.31 Aligned_cols=250 Identities=14% Similarity=0.236 Sum_probs=153.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----HhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeE
Q 006380 374 GAIDRKLYVGNLHFNMTETQLR----KLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRT 449 (647)
Q Consensus 374 ~~~~~~l~v~nLp~~~~e~~l~----~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~ 449 (647)
..+.++|||+|||+.+++++|+ ++|+.||.|..|.|++ ++.++|||||+|.+.++|.+||..|+|. .|.|+.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~ 81 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGF-PFYDKP 81 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCC-eeCCcE
Confidence 3456999999999999999966 8999999999999876 6788999999999999999999999995 799999
Q ss_pred EEEEeecCCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCC----CCc-----ccccc
Q 006380 450 LKVSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAV----NGS-----AVNQQ 520 (647)
Q Consensus 450 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-----~~~~~ 520 (647)
|.|.|+...................................................+..... ... .....
T Consensus 82 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (282)
T 3pgw_A 82 MRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQP 161 (282)
T ss_pred EEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCC
Confidence 999999754421111000000000000000000000000000000000000000000000000 000 00000
Q ss_pred ccc-----cCccCCCCC-------CCCCCCCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhcc
Q 006380 521 AIS-----LPVVGQPAV-------PVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKY 588 (647)
Q Consensus 521 ~~~-----~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~ 588 (647)
... .+..+.... .........++.........++++|||.|| |..++ +++|.++|++|
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl--~~~~~--------~~~l~~~F~~~ 231 (282)
T 3pgw_A 162 PYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNL--PEETN--------ELMLSMLFNQF 231 (282)
T ss_pred CCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCC--CCcCC--------HHHHHHHHHhc
Confidence 000 000000000 000000111111122234567789999999 88887 79999999999
Q ss_pred CCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccC-CeEEEEEEcC
Q 006380 589 GRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFA-RRLISAIFMK 637 (647)
Q Consensus 589 G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~-Gr~l~v~~~~ 637 (647)
|.|..|.|..+.+|+|||+|.+.++|.+|+..|||..|. |+.|+|+|+.
T Consensus 232 G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 232 PGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 999999998777899999999999999999999999999 9999999974
No 6
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.96 E-value=3.5e-28 Score=231.20 Aligned_cols=177 Identities=21% Similarity=0.389 Sum_probs=151.2
Q ss_pred CCCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecc
Q 006380 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEV 296 (647)
Q Consensus 217 ~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (647)
....++|||+|||+.+|+++|.++|++||.|..|.|+.++.+|.++|||
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~a------------------------------- 58 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFG------------------------------- 58 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEE-------------------------------
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceE-------------------------------
Confidence 4567999999999999999999999999999999999999999999999
Q ss_pred cceEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCChhhhhhhcccccCCCCCCCCCCCC
Q 006380 297 GMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAI 376 (647)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (647)
||+|.+.++|..||.+++..+.|..|.|.++......... .....
T Consensus 59 -------------------------fV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~~~~~~~----------~~~~~ 103 (196)
T 1l3k_A 59 -------------------------FVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP----------GAHLT 103 (196)
T ss_dssp -------------------------EEEESSHHHHHHHHHTCSCEETTEECEEEECCC---------------------C
T ss_pred -------------------------EEEeCCHHHHHHHHhcCCCEECCEEeeeecccCccccccc----------ccCCC
Confidence 9999999999999999999999999999876543222111 11223
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
..+|||+|||+.+++++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|.+||.. ++. .|+|+.|.|.++.
T Consensus 104 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~-~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYH-TVNGHNCEVRKAL 181 (196)
T ss_dssp CSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCC-EETTEECEEEECC
T ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCc-EECCEEEEEEecC
Confidence 48999999999999999999999999999999999988999999999999999999999965 775 7999999999998
Q ss_pred CCCCC
Q 006380 457 DHVGT 461 (647)
Q Consensus 457 ~~~~~ 461 (647)
++...
T Consensus 182 ~k~~~ 186 (196)
T 1l3k_A 182 SKQEM 186 (196)
T ss_dssp -----
T ss_pred ChhHh
Confidence 65443
No 7
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.7e-27 Score=219.90 Aligned_cols=164 Identities=21% Similarity=0.469 Sum_probs=148.4
Q ss_pred ceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecccceE
Q 006380 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVGMVF 300 (647)
Q Consensus 221 ~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (647)
++|||+|||..+|+++|.++|++||.|.+|.++.++. +.++|||
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~a----------------------------------- 44 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYA----------------------------------- 44 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEE-----------------------------------
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEE-----------------------------------
Confidence 5899999999999999999999999999999999875 6788888
Q ss_pred eecCCccccccCCcccccceeeEEecCCcCHHHHH-HhcCccccCccccCCCChhhhhhhcccccCCCCCCCCCCCCCce
Q 006380 301 FLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRK 379 (647)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al-~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (647)
||+|.+.++|..|+ .++|..+.|..|.|.++..... .......+
T Consensus 45 ---------------------fV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~--------------~~~~~~~~ 89 (166)
T 3md3_A 45 ---------------------FVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQ--------------SSSDDTFN 89 (166)
T ss_dssp ---------------------EEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCC--------------CCCTTCEE
T ss_pred ---------------------EEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCC--------------CCCCCCce
Confidence 99999999999999 7999999999999987643211 12233589
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 380 LYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 380 l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
|||+|||..+++++|+++|+.||.|..+.++.+..++.++|+|||+|.+.++|.+|+..|+|. .|+|+.|.|.|+.
T Consensus 90 l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~i~v~~a~ 165 (166)
T 3md3_A 90 LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQ-DLNGRPLRINWAA 165 (166)
T ss_dssp EEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTC-EETTEECEEEESC
T ss_pred EEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC-ccCCcEEEEEecC
Confidence 999999999999999999999999999999999889999999999999999999999999996 7999999999986
No 8
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.95 E-value=4.6e-28 Score=224.06 Aligned_cols=165 Identities=23% Similarity=0.437 Sum_probs=149.6
Q ss_pred CCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecccc
Q 006380 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVGM 298 (647)
Q Consensus 219 ~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (647)
++++|||+|||+.+|+++|.++|++||.|.+|.++.++.+|.++|||
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~a--------------------------------- 48 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFG--------------------------------- 48 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCE---------------------------------
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceE---------------------------------
Confidence 57899999999999999999999999999999999999999999999
Q ss_pred eEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCChhhhhhhcccccCCCCCCCCCCCCCc
Q 006380 299 VFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDR 378 (647)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (647)
||+|.+.++|..|+. ++..+.|..|.+.++....... ...
T Consensus 49 -----------------------fV~f~~~~~a~~A~~-~~~~~~g~~i~v~~~~~~~~~~----------------~~~ 88 (167)
T 2cjk_A 49 -----------------------FLSFEKPSSVDEVVK-TQHILDGKVIDPKRAIPRDEQD----------------KTG 88 (167)
T ss_dssp -----------------------EEEESSTHHHHHHHH-SCCEETTEECCCEECCCHHHHH----------------HCE
T ss_pred -----------------------EEEEccHHHHHHHHh-cccccCCeEcccccccchhhcc----------------CCC
Confidence 999999999999998 3678899999987765433221 127
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecCC
Q 006380 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDH 458 (647)
Q Consensus 379 ~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~~ 458 (647)
+|||+|||..+++++|+++|+.||.|..|.|+.+..+|.++|||||+|.+.++|.+|++ +++ ..|+|+.|.|.|+.++
T Consensus 89 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~-~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 89 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKF-IDFKDRKIEIKRAEPR 166 (167)
T ss_dssp EEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSE-ECSSSSCEEEEECCCC
T ss_pred eEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCC-EEeCCeEEEEeecCCC
Confidence 89999999999999999999999999999999998899999999999999999999996 888 5799999999999753
No 9
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.95 E-value=4.8e-27 Score=217.40 Aligned_cols=159 Identities=25% Similarity=0.378 Sum_probs=143.6
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
.++|||+|||+.+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|..|+..|+|. .+.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~-~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGI-TVRNKRLKVSYAR 81 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEECC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCC-EeCCcEEEEEecC
Confidence 489999999999999999999999999999999999889999999999999999999999999995 7999999999986
Q ss_pred CCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCCCCCCC
Q 006380 457 DHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPA 536 (647)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (647)
+...
T Consensus 82 ~~~~---------------------------------------------------------------------------- 85 (168)
T 1b7f_A 82 PGGE---------------------------------------------------------------------------- 85 (168)
T ss_dssp CCSS----------------------------------------------------------------------------
T ss_pred CCcc----------------------------------------------------------------------------
Confidence 3110
Q ss_pred CCCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCC-----CceEEEEeCCH
Q 006380 537 VTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRS-----AGFVYLRFEST 611 (647)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~-----~g~afV~F~~~ 611 (647)
..+..+|+|.|| |..++ +++|.++|++||.|..|.+..+. +|+|||+|.+.
T Consensus 86 --------------~~~~~~l~v~nl--~~~~t--------~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 141 (168)
T 1b7f_A 86 --------------SIKDTNLYVTNL--PRTIT--------DDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKR 141 (168)
T ss_dssp --------------TTTTCEEEEESC--CTTCC--------HHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred --------------cCCCCCEEEeCC--CCCCC--------HHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCH
Confidence 123468999999 88887 79999999999999999986543 68999999999
Q ss_pred HHHHHHHHHhcCcccCC--eEEEEEEc
Q 006380 612 EAAASAQRAMHMRWFAR--RLISAIFM 636 (647)
Q Consensus 612 ~~A~~A~~~l~g~~~~G--r~l~v~~~ 636 (647)
++|.+|+..|||..|.| ++|+|.|+
T Consensus 142 ~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 142 EEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 99999999999999988 99999985
No 10
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.4e-27 Score=216.52 Aligned_cols=161 Identities=22% Similarity=0.316 Sum_probs=142.8
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecC
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 457 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~ 457 (647)
++|||+|||..+++++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|..|+..|+|. .+.|+.|.|.++.+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~-~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGK-QIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCC-ccCCCeeEEEEcCC
Confidence 589999999999999999999999999999999987 6789999999999999999999999996 79999999999763
Q ss_pred CCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCCCCCCCC
Q 006380 458 HVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPAV 537 (647)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (647)
....
T Consensus 79 ~~~~---------------------------------------------------------------------------- 82 (166)
T 3md3_A 79 SQQS---------------------------------------------------------------------------- 82 (166)
T ss_dssp CCCC----------------------------------------------------------------------------
T ss_pred CCCC----------------------------------------------------------------------------
Confidence 1100
Q ss_pred CCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCHH
Q 006380 538 TAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTE 612 (647)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~~ 612 (647)
...++.+|+|.|| |..++ +++|.++|++||.|..|.+..+ ++|+|||+|.+.+
T Consensus 83 ------------~~~~~~~l~v~nl--~~~~t--------~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~ 140 (166)
T 3md3_A 83 ------------SSDDTFNLFVGDL--NVNVD--------DETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQD 140 (166)
T ss_dssp ------------CCTTCEEEEEESC--CTTCC--------HHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHH
T ss_pred ------------CCCCCceEEECCC--CCCCC--------HHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHH
Confidence 1234568999999 88887 7999999999999999988644 4789999999999
Q ss_pred HHHHHHHHhcCcccCCeEEEEEEcCh
Q 006380 613 AAASAQRAMHMRWFARRLISAIFMKP 638 (647)
Q Consensus 613 ~A~~A~~~l~g~~~~Gr~l~v~~~~~ 638 (647)
+|.+|+..|||..|+|+.|+|.|+.+
T Consensus 141 ~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 141 DAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHHHHHHHHTTCEETTEECEEEESCC
T ss_pred HHHHHHHHhCCCccCCcEEEEEecCC
Confidence 99999999999999999999999863
No 11
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.95 E-value=1.1e-26 Score=214.72 Aligned_cols=159 Identities=29% Similarity=0.415 Sum_probs=142.3
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
.++|||+|||+.+++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|..|+..|+|. .+.|+.|.|.++.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~-~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGL-RLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEECC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCC-ccCCceEEEEecC
Confidence 379999999999999999999999999999999999889999999999999999999999999995 7999999999976
Q ss_pred CCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCCCCCCC
Q 006380 457 DHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPA 536 (647)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (647)
+...
T Consensus 81 ~~~~---------------------------------------------------------------------------- 84 (167)
T 1fxl_A 81 PSSA---------------------------------------------------------------------------- 84 (167)
T ss_dssp CCCG----------------------------------------------------------------------------
T ss_pred CCcc----------------------------------------------------------------------------
Confidence 2110
Q ss_pred CCCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCH
Q 006380 537 VTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFEST 611 (647)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~ 611 (647)
..+..+|+|.|| |..++ +++|.++|++||.|..|.+..+ ++|+|||+|.+.
T Consensus 85 --------------~~~~~~l~v~nl--~~~~t--------~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 140 (167)
T 1fxl_A 85 --------------SIRDANLYVSGL--PKTMT--------QKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 140 (167)
T ss_dssp --------------GGTTCEEEEESC--CTTCC--------HHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred --------------cCCCCcEEECCC--CCcCC--------HHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCH
Confidence 122357999999 88887 7999999999999999988654 378999999999
Q ss_pred HHHHHHHHHhcCcccCCeE--EEEEEc
Q 006380 612 EAAASAQRAMHMRWFARRL--ISAIFM 636 (647)
Q Consensus 612 ~~A~~A~~~l~g~~~~Gr~--l~v~~~ 636 (647)
++|.+|++.|||..|.|+. |.|.|+
T Consensus 141 ~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 141 IEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHHHhcCCccCCCccceEEEeC
Confidence 9999999999999999965 888885
No 12
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.95 E-value=1.9e-27 Score=220.02 Aligned_cols=164 Identities=27% Similarity=0.421 Sum_probs=150.5
Q ss_pred CCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecccc
Q 006380 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVGM 298 (647)
Q Consensus 219 ~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (647)
+.++|||+|||..+|+++|.++|++||.|..|.++.++.+|.++|||
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~a--------------------------------- 48 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYA--------------------------------- 48 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEE---------------------------------
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEE---------------------------------
Confidence 46899999999999999999999999999999999999999999999
Q ss_pred eEeecCCccccccCCcccccceeeEEecCCcCHHHHHH-hcCccccCccccCCCChhhhhhhcccccCCCCCCCCCCCCC
Q 006380 299 VFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAID 377 (647)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~-l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (647)
||+|.+.++|..|+. ++|..+.|..|.|.++.+.. .....
T Consensus 49 -----------------------fV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~----------------~~~~~ 89 (168)
T 1b7f_A 49 -----------------------FVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGG----------------ESIKD 89 (168)
T ss_dssp -----------------------EEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCS----------------STTTT
T ss_pred -----------------------EEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCc----------------ccCCC
Confidence 999999999999995 99999999999998764321 11234
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCC--eEEEEEee
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG--RTLKVSSV 455 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g--~~l~v~~~ 455 (647)
.+|+|+|||..+++++|+++|++||.|..|.++.+..++.++|+|||+|.+.++|.+|+..|+|. .|.| ++|.|.||
T Consensus 90 ~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 90 TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNV-IPEGGSQPLSVRLA 168 (168)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-CCTTCSSCCEEEEC
T ss_pred CCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCC-EecCCCeEEEEEeC
Confidence 89999999999999999999999999999999999889999999999999999999999999996 6877 99999886
No 13
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.95 E-value=3.8e-27 Score=217.74 Aligned_cols=163 Identities=26% Similarity=0.464 Sum_probs=148.5
Q ss_pred CceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecccce
Q 006380 220 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVGMV 299 (647)
Q Consensus 220 ~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (647)
.++|||+|||+.+|+++|.++|++||.|..+.++.++.+|.++|||
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~a---------------------------------- 47 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYG---------------------------------- 47 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEE----------------------------------
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEE----------------------------------
Confidence 5799999999999999999999999999999999999999999999
Q ss_pred EeecCCccccccCCcccccceeeEEecCCcCHHHHHH-hcCccccCccccCCCChhhhhhhcccccCCCCCCCCCCCCCc
Q 006380 300 FFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDR 378 (647)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~-l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (647)
||+|.+.++|..|+. ++|..+.|..|.|.++.+... .....
T Consensus 48 ----------------------fV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~----------------~~~~~ 89 (167)
T 1fxl_A 48 ----------------------FVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA----------------SIRDA 89 (167)
T ss_dssp ----------------------EEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCG----------------GGTTC
T ss_pred ----------------------EEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcc----------------cCCCC
Confidence 999999999999995 999999999999977643211 11237
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeE--EEEEee
Q 006380 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRT--LKVSSV 455 (647)
Q Consensus 379 ~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~--l~v~~~ 455 (647)
+|+|+|||..+++++|+++|++||.|..|.++.+..+|.++|+|||+|.+.++|.+|+..|||. .|.|+. |.|.||
T Consensus 90 ~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 90 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITVKFA 167 (167)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-CCTTCSSCCEEEEC
T ss_pred cEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC-ccCCCccceEEEeC
Confidence 8999999999999999999999999999999998889999999999999999999999999996 799964 888875
No 14
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.95 E-value=1.3e-26 Score=220.31 Aligned_cols=170 Identities=20% Similarity=0.337 Sum_probs=141.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEee
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 455 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~ 455 (647)
..++|||+|||+.+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||.. ++. .|.|+.|.|.++
T Consensus 12 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~-~~~g~~l~v~~~ 89 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPH-KVDGRVVEPKRA 89 (196)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSC-EETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCC-EECCEEeeeecc
Confidence 358999999999999999999999999999999999988999999999999999999999955 774 799999999998
Q ss_pred cCCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCCCCCC
Q 006380 456 TDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVP 535 (647)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (647)
........ +
T Consensus 90 ~~~~~~~~-----------------------------------------------------------------------~ 98 (196)
T 1l3k_A 90 VSREDSQR-----------------------------------------------------------------------P 98 (196)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred cCcccccc-----------------------------------------------------------------------c
Confidence 63211000 0
Q ss_pred CCCCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCC
Q 006380 536 AVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFES 610 (647)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~ 610 (647)
....+..+|+|.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+
T Consensus 99 -------------~~~~~~~~l~V~nL--p~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~ 155 (196)
T 1l3k_A 99 -------------GAHLTVKKIFVGGI--KEDTE--------EHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD 155 (196)
T ss_dssp -----------------CCSEEEEECC--TTTCC--------HHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred -------------ccCCCcceEEEeCC--CCCCC--------HHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECC
Confidence 00134468999999 88887 8999999999999999988654 37899999999
Q ss_pred HHHHHHHHHHhcCcccCCeEEEEEEcChhhhh
Q 006380 611 TEAAASAQRAMHMRWFARRLISAIFMKPEDYE 642 (647)
Q Consensus 611 ~~~A~~A~~~l~g~~~~Gr~l~v~~~~~~~~~ 642 (647)
.++|.+|+.. +|..|.|+.|.|.++.+.+-.
T Consensus 156 ~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 156 HDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp HHHHHHHHHC-SCCEETTEECEEEECC-----
T ss_pred HHHHHHHHHh-CCcEECCEEEEEEecCChhHh
Confidence 9999999986 899999999999999887643
No 15
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.95 E-value=7.5e-27 Score=225.59 Aligned_cols=179 Identities=18% Similarity=0.359 Sum_probs=151.4
Q ss_pred CCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecccc
Q 006380 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVGM 298 (647)
Q Consensus 219 ~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (647)
..++|||+|||..+|+++|.++|++||.|..|.|+.+..+|.++|||
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~a--------------------------------- 73 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFA--------------------------------- 73 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEE---------------------------------
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceE---------------------------------
Confidence 35799999999999999999999999999999999999999999999
Q ss_pred eEeecCCccccccCCcccccceeeEEecCCcCHHHHHH-hcCccccCccccCCCChhhhhhhcccccCCCCCCCCCCCCC
Q 006380 299 VFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAID 377 (647)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~-l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (647)
||+|.+.++|..|+. |+|..+.|+.|.|.++............. .......
T Consensus 74 -----------------------fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~-----~~~~~~~ 125 (216)
T 2qfj_A 74 -----------------------FVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQL-----AEEARAF 125 (216)
T ss_dssp -----------------------EEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHH-----HHHHTTS
T ss_pred -----------------------EEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhh-----hcccCCC
Confidence 999999999999996 99999999999997654322111000000 0001224
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecC
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 457 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~ 457 (647)
.+|||+|||..+++++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|.+|+..|+|. .|+|+.|.|.|+.+
T Consensus 126 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~-~~~g~~i~V~~a~~ 204 (216)
T 2qfj_A 126 NRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLF-DLGGQYLRVGKAVT 204 (216)
T ss_dssp CEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-BCSSSBCEEEECSS
T ss_pred cEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCC-EeCCcEEEEEEecC
Confidence 89999999999999999999999999999999999889999999999999999999999999996 79999999999986
Q ss_pred CC
Q 006380 458 HV 459 (647)
Q Consensus 458 ~~ 459 (647)
..
T Consensus 205 ~~ 206 (216)
T 2qfj_A 205 PP 206 (216)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 16
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.94 E-value=1.9e-26 Score=222.82 Aligned_cols=176 Identities=19% Similarity=0.391 Sum_probs=146.2
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecC
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 457 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~ 457 (647)
++|||+|||..+++++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|.+||+.|++. .|.|+.|.|.++..
T Consensus 29 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~-~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 29 SRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSV-MLGGRNIKVGRPSN 107 (216)
T ss_dssp TEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSC-CCC-CCCEEECCSC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCC-eeCCeeEEEecCCC
Confidence 79999999999999999999999999999999999889999999999999999999999999995 79999999988653
Q ss_pred CCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCCCCCCCC
Q 006380 458 HVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPAV 537 (647)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (647)
.... ... ......
T Consensus 108 ~~~~------------------------~~~-~~~~~~------------------------------------------ 120 (216)
T 2qfj_A 108 IGQA------------------------QPI-IDQLAE------------------------------------------ 120 (216)
T ss_dssp CGGG------------------------HHH-HHHHHH------------------------------------------
T ss_pred cccc------------------------chh-hhhhhc------------------------------------------
Confidence 2100 000 000000
Q ss_pred CCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCHH
Q 006380 538 TAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTE 612 (647)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~~ 612 (647)
...+..+|+|.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+.+
T Consensus 121 ------------~~~~~~~l~v~nl--p~~~t--------~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~ 178 (216)
T 2qfj_A 121 ------------EARAFNRIYVASV--HQDLS--------DDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQ 178 (216)
T ss_dssp ------------HHTTSCEEEEECC--CTTCC--------HHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred ------------ccCCCcEEEEeCC--CCcCC--------HHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHH
Confidence 0134568999999 88887 8999999999999999998755 3789999999999
Q ss_pred HHHHHHHHhcCcccCCeEEEEEEcChhhhhh
Q 006380 613 AAASAQRAMHMRWFARRLISAIFMKPEDYEA 643 (647)
Q Consensus 613 ~A~~A~~~l~g~~~~Gr~l~v~~~~~~~~~~ 643 (647)
+|.+|+..|||..|+|+.|.|.|+.+.....
T Consensus 179 ~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~~ 209 (216)
T 2qfj_A 179 SSQDAVSSMNLFDLGGQYLRVGKAVTPPMPL 209 (216)
T ss_dssp HHHHHHHHHTTCBCSSSBCEEEECSSCSSTT
T ss_pred HHHHHHHHccCCEeCCcEEEEEEecCCCCCC
Confidence 9999999999999999999999988765443
No 17
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.94 E-value=1.3e-26 Score=215.86 Aligned_cols=166 Identities=28% Similarity=0.484 Sum_probs=143.3
Q ss_pred CCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCC--CccceeeeeeeccCccccccccccCceeeeeeeeecc
Q 006380 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSR--RSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEV 296 (647)
Q Consensus 219 ~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~--~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (647)
++++|||+|||+.+|+++|.++|++||.|.+|.|+.++.++ .++|||
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~a------------------------------- 50 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCC------------------------------- 50 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEE-------------------------------
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEE-------------------------------
Confidence 46899999999999999999999999999999999999887 889988
Q ss_pred cceEeecCCccccccCCcccccceeeEEecCCcCHHHHHH-hcCcccc---CccccCCCChhhhhhhcccccCCCCCCCC
Q 006380 297 GMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA-LSGQLLL---GQPVMVKPSEAEKNLVQSNTSAGGTATGP 372 (647)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~-l~g~~~~---g~~l~v~~~~~~~~~~~~~~~~~~~~~~~ 372 (647)
||+|.+.++|..|+. ++|..+. +..+.+.++.....
T Consensus 51 -------------------------fV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~--------------- 90 (175)
T 3nmr_A 51 -------------------------FVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKN--------------- 90 (175)
T ss_dssp -------------------------EEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCC---------------
T ss_pred -------------------------EEEECCHHHHHHHHHHhcCcEEccCCccceEEcccccccc---------------
Confidence 999999999999995 9998775 45555555433221
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeC--CeEE
Q 006380 373 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIV--GRTL 450 (647)
Q Consensus 373 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~--g~~l 450 (647)
......+|||+|||..+++++|+++|++||.|..|.|+.+. +|.++|||||+|.+.++|.+|+..|||...+. |++|
T Consensus 91 ~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l 169 (175)
T 3nmr_A 91 NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPM 169 (175)
T ss_dssp SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCC
T ss_pred ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCe
Confidence 11234799999999999999999999999999999999986 79999999999999999999999999963233 4999
Q ss_pred EEEeec
Q 006380 451 KVSSVT 456 (647)
Q Consensus 451 ~v~~~~ 456 (647)
.|.||.
T Consensus 170 ~V~~ad 175 (175)
T 3nmr_A 170 VVKFAD 175 (175)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999973
No 18
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.94 E-value=7.5e-27 Score=222.32 Aligned_cols=184 Identities=21% Similarity=0.412 Sum_probs=146.6
Q ss_pred CCCceEEeccCCccCCHHHHHHHHHhcCCceeEE-----EeecCCCCCccceeeeeeeccCccccccccccCceeeeeee
Q 006380 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVR-----LIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFL 292 (647)
Q Consensus 218 ~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~-----i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (647)
+.+++|||+|||+.+|+++|.++|++||.|..+. .+.+..++.++|||
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~a--------------------------- 54 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFA--------------------------- 54 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEE---------------------------
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEE---------------------------
Confidence 3578999999999999999999999996444322 12222235567887
Q ss_pred eecccceEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCChhhhhhhccccc----CCCC
Q 006380 293 VAEVGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTS----AGGT 368 (647)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~~~~~~~~~~~~----~~~~ 368 (647)
||+|.+.++|..|+.|+|..+.|+.|.|.++............ ..+.
T Consensus 55 -----------------------------fV~F~~~~~A~~Al~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 105 (198)
T 2yh0_A 55 -----------------------------FLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGV 105 (198)
T ss_dssp -----------------------------EEEESCSHHHHHHGGGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTS
T ss_pred -----------------------------EEEeCCHHHHHHHHHhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCC
Confidence 9999999999999999999999999999876543221111000 0111
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCe
Q 006380 369 ATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGR 448 (647)
Q Consensus 369 ~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~ 448 (647)
..........+|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|+..|+|. .|+|+
T Consensus 106 ~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~ 184 (198)
T 2yh0_A 106 VSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGM-QLGDK 184 (198)
T ss_dssp SCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTC-EETTE
T ss_pred ccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCC-EECCE
Confidence 11222245689999999999999999999999999999999999889999999999999999999999999995 79999
Q ss_pred EEEEEeecCC
Q 006380 449 TLKVSSVTDH 458 (647)
Q Consensus 449 ~l~v~~~~~~ 458 (647)
.|.|.|+.+.
T Consensus 185 ~l~v~~a~~~ 194 (198)
T 2yh0_A 185 KLLVQRASVG 194 (198)
T ss_dssp ECEEEESCCC
T ss_pred EEEEEECCCC
Confidence 9999999864
No 19
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.94 E-value=1.4e-25 Score=218.22 Aligned_cols=194 Identities=24% Similarity=0.310 Sum_probs=147.2
Q ss_pred CCCceEEEcCCCC-CCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEE
Q 006380 375 AIDRKLYVGNLHF-NMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 453 (647)
Q Consensus 375 ~~~~~l~v~nLp~-~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~ 453 (647)
+++++|||+|||+ .+++++|+++|+.||.|..|.|+.+. +|||||+|.+.++|.+|++.|+|. .|.|+.|.|.
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~-~~~g~~l~v~ 105 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGH-KLHGKPIRIT 105 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTC-BCSSSBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCC-eECCeEEEEE
Confidence 4468999999999 99999999999999999999998875 789999999999999999999995 7999999999
Q ss_pred eecCCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCCCC
Q 006380 454 SVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVP 533 (647)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (647)
++............. . .... . .+... .. . . ..
T Consensus 106 ~a~~~~~~~~~~~~~----~---~~~~--~--------~~~~~-------------~~--------~--~---~~----- 137 (229)
T 2adc_A 106 LSKHQNVQLPREGQE----D---QGLT--K--------DYGNS-------------PL--------H--R---FK----- 137 (229)
T ss_dssp CCSCCCCCCCCSSSS----T---TTTE--E--------ECTTC-------------SS--------C--C---CC-----
T ss_pred EecCccccCcccccc----c---cccc--c--------ccccC-------------cc--------c--c---cC-----
Confidence 987543211000000 0 0000 0 00000 00 0 0 00
Q ss_pred CCCCCCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccC-CeEEEEEecCCCceEEEEeCCHH
Q 006380 534 VPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYG-RVKHIYVDKRSAGFVYLRFESTE 612 (647)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G-~v~~v~l~~~~~g~afV~F~~~~ 612 (647)
.+. ... .....+++.+|+|.|| |..++ +++|.++|++|| .|..|.|...++|+|||+|.+.+
T Consensus 138 ~~~------~~~-~~~~~~~~~~l~V~nl--p~~~t--------~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~ 200 (229)
T 2adc_A 138 KPG------SKN-FQNIFPPSATLHLSNI--PPSVS--------EEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVE 200 (229)
T ss_dssp STT------SGG-GTTCCCSCSEEEEECC--CTTCC--------HHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHH
T ss_pred Ccc------ccc-cccCCCCCCEEEEeCC--CccCC--------HHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHH
Confidence 000 000 0001356789999999 88887 799999999999 99999997667999999999999
Q ss_pred HHHHHHHHhcCcccC-CeEEEEEEcChh
Q 006380 613 AAASAQRAMHMRWFA-RRLISAIFMKPE 639 (647)
Q Consensus 613 ~A~~A~~~l~g~~~~-Gr~l~v~~~~~~ 639 (647)
+|.+|+..|||..|. |+.|+|.|+.+.
T Consensus 201 ~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 201 EAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp HHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred HHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 999999999999999 999999998763
No 20
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.94 E-value=8.1e-26 Score=210.58 Aligned_cols=161 Identities=23% Similarity=0.353 Sum_probs=138.1
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCC--CeeeEEEEEeCCHHHHHHHHHHHcCCeeeC---CeEEE
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETG--QCKGFGFVQFAQLEHAKAAQSALNGKLEIV---GRTLK 451 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~--~~~g~afV~f~~~~~A~~Al~~l~g~~~~~---g~~l~ 451 (647)
.++|||+|||+.+++++|+++|++||.|..|.|+.+..++ .++|||||+|.+.++|..|+..|++. .+. ++.+.
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~-~~~~~~~~~~~ 81 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNM-KVLPGMHHPIQ 81 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTT-CCCTTCSSCCE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCc-EEccCCccceE
Confidence 3899999999999999999999999999999999998776 89999999999999999999999996 444 46677
Q ss_pred EEeecCCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCC
Q 006380 452 VSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPA 531 (647)
Q Consensus 452 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (647)
+.++.....
T Consensus 82 ~~~~~~~~~----------------------------------------------------------------------- 90 (175)
T 3nmr_A 82 MKPADSEKN----------------------------------------------------------------------- 90 (175)
T ss_dssp EEECGGGCC-----------------------------------------------------------------------
T ss_pred Ecccccccc-----------------------------------------------------------------------
Confidence 766542100
Q ss_pred CCCCCCCCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC----CCceEEEE
Q 006380 532 VPVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR----SAGFVYLR 607 (647)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~----~~g~afV~ 607 (647)
...+..+|+|.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+
T Consensus 91 ------------------~~~~~~~l~v~nl--~~~~t--------~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~ 142 (175)
T 3nmr_A 91 ------------------NAVEDRKLFIGMI--SKKCT--------ENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVT 142 (175)
T ss_dssp ------------------SCGGGSEEEEESC--CTTCC--------HHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEE
T ss_pred ------------------ccCCCCeEEEcCC--CCcCC--------HHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEE
Confidence 0123458999999 88887 7999999999999999998755 47899999
Q ss_pred eCCHHHHHHHHHHhcCcccC---CeEEEEEEcC
Q 006380 608 FESTEAAASAQRAMHMRWFA---RRLISAIFMK 637 (647)
Q Consensus 608 F~~~~~A~~A~~~l~g~~~~---Gr~l~v~~~~ 637 (647)
|.+.++|.+|++.|||..+. |++|.|.|+.
T Consensus 143 f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 143 FTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp ESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred ECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 99999999999999998776 4999999974
No 21
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.94 E-value=6.1e-27 Score=217.60 Aligned_cols=160 Identities=25% Similarity=0.496 Sum_probs=140.3
Q ss_pred CCCceEEeccCCccCCHHHHHHHHHhc----C-------CceeEEEeecCCCCCccceeeeeeeccCccccccccccCce
Q 006380 218 RDQRTVFAYQMPLKATERDVYEFFSKA----G-------KVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCC 286 (647)
Q Consensus 218 ~~~~~v~i~nlp~~~te~~l~~~f~~~----G-------~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~ 286 (647)
++.++|||+|||+.+|+++|.++|++| | .|..+.+ +.++|||
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~------~~~~g~a--------------------- 54 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFA--------------------- 54 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE------ETTTTEE---------------------
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe------cCCCCEE---------------------
Confidence 357899999999999999999999999 5 4444444 3457777
Q ss_pred eeeeeeeecccceEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCChhhhhhhcccccCC
Q 006380 287 VIKFFLVAEVGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAG 366 (647)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~ 366 (647)
||+|.+.++|..|+.++|..+.|+.|.|.++.....
T Consensus 55 -----------------------------------fV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~~~~~--------- 90 (172)
T 2g4b_A 55 -----------------------------------FLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQP--------- 90 (172)
T ss_dssp -----------------------------------EEEESSHHHHHHHGGGTTCEETTEECEEECCSSCCC---------
T ss_pred -----------------------------------EEEeCCHHHHHHHHHhCCcEecCceeeecCCcccCC---------
Confidence 999999999999999999999999999987532211
Q ss_pred CCCCCCCCCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeC
Q 006380 367 GTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIV 446 (647)
Q Consensus 367 ~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~ 446 (647)
.....+|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|+|||+|.+.++|.+|+..|+|. .|+
T Consensus 91 -------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~-~~~ 162 (172)
T 2g4b_A 91 -------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGM-QLG 162 (172)
T ss_dssp -------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTC-EET
T ss_pred -------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCC-EEC
Confidence 112489999999999999999999999999999999999889999999999999999999999999996 799
Q ss_pred CeEEEEEeec
Q 006380 447 GRTLKVSSVT 456 (647)
Q Consensus 447 g~~l~v~~~~ 456 (647)
|+.|.|.||.
T Consensus 163 g~~l~V~~As 172 (172)
T 2g4b_A 163 DKKLLVQRAS 172 (172)
T ss_dssp TEECEEEECC
T ss_pred CeEEEEEeCC
Confidence 9999999973
No 22
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.93 E-value=1.5e-26 Score=215.59 Aligned_cols=166 Identities=20% Similarity=0.348 Sum_probs=144.8
Q ss_pred CCCCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeec
Q 006380 216 PERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAE 295 (647)
Q Consensus 216 ~~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (647)
...+.++|||+|||..+|+++|.++|.+||.+.. .++.+..+|.++|||
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~a------------------------------ 57 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFG------------------------------ 57 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEE------------------------------
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEE------------------------------
Confidence 4457899999999999999999999999998877 455566778889998
Q ss_pred ccceEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCChhhhhhhcccccCCCCCCCCCCC
Q 006380 296 VGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGA 375 (647)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (647)
||+|.+.++|..|++|+|..+.|+.|.|.++...... ...
T Consensus 58 --------------------------fV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~~~~~--------------~~~ 97 (175)
T 1fje_B 58 --------------------------YVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDSK--------------KVR 97 (175)
T ss_dssp --------------------------EEEESSHHHHHHHHHGGGEEETTEEEEEECCCCSSCS--------------TTG
T ss_pred --------------------------EEEECCHHHHHHHHhcCCCEeCCeEEEEecCCCcccc--------------ccc
Confidence 9999999999999999999999999999887543211 112
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEee
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 455 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~ 455 (647)
...+|||+|||..+++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|+|. .|+|+.|.|.|+
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~i~v~~a 171 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGA-EIDGRSVSLYYT 171 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEE-EETTEEEEEEEC
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCC-EECCeEEEEEec
Confidence 34899999999999999999999999988766 347889999999999999999999999995 799999999999
Q ss_pred cCC
Q 006380 456 TDH 458 (647)
Q Consensus 456 ~~~ 458 (647)
.++
T Consensus 172 ~~k 174 (175)
T 1fje_B 172 GEK 174 (175)
T ss_dssp SSC
T ss_pred CCC
Confidence 753
No 23
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.93 E-value=2.9e-26 Score=211.86 Aligned_cols=159 Identities=20% Similarity=0.358 Sum_probs=140.5
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
+++|||+|||+.+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|..|+.. +. .+.|+.|.|.++.
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~-~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QH-ILDGKVIDPKRAI 79 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CC-EETTEECCCEECC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--cc-ccCCeEccccccc
Confidence 48999999999999999999999999999999999988999999999999999999999964 43 6999999988865
Q ss_pred CCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCCCCCCC
Q 006380 457 DHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPA 536 (647)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (647)
+.. .
T Consensus 80 ~~~----------------------------~------------------------------------------------ 83 (167)
T 2cjk_A 80 PRD----------------------------E------------------------------------------------ 83 (167)
T ss_dssp CHH----------------------------H------------------------------------------------
T ss_pred chh----------------------------h------------------------------------------------
Confidence 200 0
Q ss_pred CCCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCH
Q 006380 537 VTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFEST 611 (647)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~ 611 (647)
..+..+|+|.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+.
T Consensus 84 --------------~~~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 139 (167)
T 2cjk_A 84 --------------QDKTGKIFVGGI--GPDVR--------PKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSA 139 (167)
T ss_dssp --------------HHHCEEEEEEEE--CTTCC--------HHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSH
T ss_pred --------------ccCCCeEEECCC--CCCCC--------HHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCH
Confidence 012357999999 88887 7999999999999999998644 479999999999
Q ss_pred HHHHHHHHHhcCcccCCeEEEEEEcChh
Q 006380 612 EAAASAQRAMHMRWFARRLISAIFMKPE 639 (647)
Q Consensus 612 ~~A~~A~~~l~g~~~~Gr~l~v~~~~~~ 639 (647)
++|.+|++ |+|..|+|+.|.|.|+.|.
T Consensus 140 ~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 140 DAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred HHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 99999998 8999999999999999875
No 24
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.93 E-value=1.8e-25 Score=212.78 Aligned_cols=192 Identities=24% Similarity=0.315 Sum_probs=146.1
Q ss_pred CceEEEcCCCC-CCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEee
Q 006380 377 DRKLYVGNLHF-NMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 455 (647)
Q Consensus 377 ~~~l~v~nLp~-~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~ 455 (647)
+++|||+|||+ .+++++|+++|+.||.|..|.|+.+. +|||||+|.+.++|.+|+..|+|. .|.|+.|.|.++
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~-~~~g~~l~v~~a 76 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGH-KLHGKPIRITLS 76 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTC-CCSSCCCEEEEC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCC-eecCeEEEEEEe
Confidence 37999999999 99999999999999999999998875 789999999999999999999995 799999999998
Q ss_pred cCCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCCCCCC
Q 006380 456 TDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVP 535 (647)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (647)
............. . ... ...... .+. .-.. .+
T Consensus 77 ~~~~~~~~~~~~~----~---~~~-------------------~~~~~~----~~~-------------~r~~-----~~ 108 (198)
T 1qm9_A 77 KHQNVQLPREGQE----D---QGL-------------------TKDYGN----SPL-------------HRFK-----KP 108 (198)
T ss_dssp CCCSCCCSSSSSS----S---SSC-------------------EEESSC----CCT-------------TSSS-----SC
T ss_pred cCCCcCCCCcCCc----c---ccc-------------------cccccC----Cch-------------hhcc-----Cc
Confidence 7543211000000 0 000 000000 000 0000 00
Q ss_pred CCCCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccC-CeEEEEEecCCCceEEEEeCCHHHH
Q 006380 536 AVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYG-RVKHIYVDKRSAGFVYLRFESTEAA 614 (647)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G-~v~~v~l~~~~~g~afV~F~~~~~A 614 (647)
.. .. .....+++.+|+|.|| |..++ +++|.++|++|| .|..|.|.++.+|+|||+|.+.++|
T Consensus 109 ~~-----~~--~~~~~~~~~~l~v~nl--~~~~~--------~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A 171 (198)
T 1qm9_A 109 GS-----KN--FQNIFPPSATLHLSNI--PPSVS--------EEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEA 171 (198)
T ss_dssp CC-----CC--CSCCCCCCCEEEECCC--CTTCC--------HHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHH
T ss_pred cc-----cc--cccCCCCccEEEEeCC--CCCCC--------HHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHH
Confidence 00 00 0001356789999999 88887 799999999999 9999999777899999999999999
Q ss_pred HHHHHHhcCcccC-CeEEEEEEcChh
Q 006380 615 ASAQRAMHMRWFA-RRLISAIFMKPE 639 (647)
Q Consensus 615 ~~A~~~l~g~~~~-Gr~l~v~~~~~~ 639 (647)
.+|+..|||..|+ |+.|+|.|+.+.
T Consensus 172 ~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 172 VQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp HHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred HHHHHHhcCCccCCCCeEEEEeeccc
Confidence 9999999999999 999999998763
No 25
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.93 E-value=3.1e-25 Score=210.85 Aligned_cols=185 Identities=18% Similarity=0.184 Sum_probs=134.9
Q ss_pred CCceEEEcCCC-CCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEe
Q 006380 376 IDRKLYVGNLH-FNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 454 (647)
Q Consensus 376 ~~~~l~v~nLp-~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~ 454 (647)
++.+|||+||| +.+++++|+++|+.||.|..|.|+.+. +|||||+|.+.++|..||+.|||. .+.|+.|.|.+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~-~~~g~~l~v~~ 76 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNN-FMFGQKMNVCV 76 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTC-EETTEECEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCC-EECCceEEEEE
Confidence 45899999999 899999999999999999999998763 799999999999999999999996 79999999999
Q ss_pred ecCCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCCCCC
Q 006380 455 VTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPV 534 (647)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (647)
+.......... .... ...+.. ...... +. .... .
T Consensus 77 s~~~~~~p~~~---~~~~---~~~~~~------------------~~~~~~----~~-------------~r~~-----~ 110 (205)
T 3tyt_A 77 SKQPAIMPGQS---YGLE---DGSCSY------------------KDFSES----RN-------------NRFS-----T 110 (205)
T ss_dssp CSCSCCCCCSC---CBCT---TSCBSE------------------EECTTC----TT-------------CSCS-----S
T ss_pred ccCCccCCCcc---cccc---cCCccc------------------cccCCC----cc-------------cccc-----C
Confidence 87432110000 0000 000000 000000 00 0000 0
Q ss_pred CCCCCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCe--EEEEEecC---CCceEEEEeC
Q 006380 535 PAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRV--KHIYVDKR---SAGFVYLRFE 609 (647)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v--~~v~l~~~---~~g~afV~F~ 609 (647)
+ .... .....+|+.+|+|.|| |..++ +++|+++|++||.| ..|.+..+ .+|+|||+|.
T Consensus 111 ~------~~~~-~~~~~~p~~~l~v~NL--p~~~t--------~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~ 173 (205)
T 3tyt_A 111 P------EQAA-KNRIQHPSNVLHFFNA--PLEVT--------EENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWD 173 (205)
T ss_dssp H------HHHT-TSCCCCCCSEEEEEEE--CTTCC--------HHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECS
T ss_pred c------cccc-ccccCCCcceEEEeCC--CCCCC--------HHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeC
Confidence 0 0000 0001356789999999 88887 79999999999999 89988654 3589999999
Q ss_pred CHHHHHHHHHHhcCcccCCe
Q 006380 610 STEAAASAQRAMHMRWFARR 629 (647)
Q Consensus 610 ~~~~A~~A~~~l~g~~~~Gr 629 (647)
+.++|.+|+..|||..|.|.
T Consensus 174 ~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 174 SKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp SHHHHHHHHHHHTTCEECCS
T ss_pred CHHHHHHHHHHhCCCCccCC
Confidence 99999999999999999987
No 26
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.93 E-value=5.2e-26 Score=211.93 Aligned_cols=164 Identities=21% Similarity=0.303 Sum_probs=139.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEe
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 454 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~ 454 (647)
...++|||+|||+.+++++|+++|..||.|.. .++.+..++.++|||||+|.+.++|.+|| .|+|. .|.|+.|.|.+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~-~~~g~~l~v~~ 87 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGL-KVFGNEIKLEK 87 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGE-EETTEEEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCC-EeCCeEEEEec
Confidence 34589999999999999999999999998766 33444457888999999999999999999 69995 79999999999
Q ss_pred ecCCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCCCCC
Q 006380 455 VTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPV 534 (647)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (647)
+.+....
T Consensus 88 ~~~~~~~------------------------------------------------------------------------- 94 (175)
T 1fje_B 88 PKGRDSK------------------------------------------------------------------------- 94 (175)
T ss_dssp CCCSSCS-------------------------------------------------------------------------
T ss_pred CCCcccc-------------------------------------------------------------------------
Confidence 8632100
Q ss_pred CCCCCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHH
Q 006380 535 PAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAA 614 (647)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A 614 (647)
...+..+|+|.|| |..++ +++|.++|++||.|..+.....++|+|||+|.+.++|
T Consensus 95 ---------------~~~~~~~l~v~nl--p~~~t--------~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A 149 (175)
T 1fje_B 95 ---------------KVRAARTLLAKNL--SFNIT--------EDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADA 149 (175)
T ss_dssp ---------------TTGGGGEEEEESC--CSSCC--------HHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHH
T ss_pred ---------------ccccCCEEEEeCC--CCCCC--------HHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHH
Confidence 0123468999999 88887 7999999999999988822334689999999999999
Q ss_pred HHHHHHhcCcccCCeEEEEEEcChh
Q 006380 615 ASAQRAMHMRWFARRLISAIFMKPE 639 (647)
Q Consensus 615 ~~A~~~l~g~~~~Gr~l~v~~~~~~ 639 (647)
.+|+..|||..|.|+.|.|.|+.+.
T Consensus 150 ~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 150 EKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHHHHHTEEEETTEEEEEEECSSC
T ss_pred HHHHHHhCCCEECCeEEEEEecCCC
Confidence 9999999999999999999999764
No 27
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.93 E-value=4.1e-25 Score=222.78 Aligned_cols=171 Identities=23% Similarity=0.276 Sum_probs=154.4
Q ss_pred CCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeeccc
Q 006380 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVG 297 (647)
Q Consensus 218 ~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (647)
....+|||+|||+.+|+++|.++|.+||.|..+.++.+..+|.++|||
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~a-------------------------------- 140 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYG-------------------------------- 140 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEE--------------------------------
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEE--------------------------------
Confidence 356799999999999999999999999999999999999999999999
Q ss_pred ceEeecCCccccccCCcccccceeeEEecCCcCHHHHH-HhcCccccCccccCCCChhhhhhhcccccCCCCCCCCCCCC
Q 006380 298 MVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAI 376 (647)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al-~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (647)
||+|.+.++|..|+ .++|..+.|+.|.|.++...... .....
T Consensus 141 ------------------------fV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~-------------~~~~~ 183 (284)
T 3smz_A 141 ------------------------FAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLT-------------PALLH 183 (284)
T ss_dssp ------------------------EEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCC-------------TTTTS
T ss_pred ------------------------EEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCC-------------cccCC
Confidence 99999999999999 69999999999999887654321 11233
Q ss_pred CceEEEcCCCCCC-CHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEee
Q 006380 377 DRKLYVGNLHFNM-TETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 455 (647)
Q Consensus 377 ~~~l~v~nLp~~~-~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~ 455 (647)
..+|||+|||..+ ++++|+++|+.||.|..|.|+.+. +|.++|+|||+|.+.++|.+|+..|+|. .|+|+.|.|.|+
T Consensus 184 ~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v~~a 261 (284)
T 3smz_A 184 SRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGL-SLGGSHLRVSFC 261 (284)
T ss_dssp CSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTC-EETTEECEEEEC
T ss_pred ccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCC-ccCCeEEEEEEe
Confidence 5899999999995 999999999999999999999987 8999999999999999999999999996 799999999999
Q ss_pred cCCC
Q 006380 456 TDHV 459 (647)
Q Consensus 456 ~~~~ 459 (647)
.+..
T Consensus 262 ~~~~ 265 (284)
T 3smz_A 262 APGP 265 (284)
T ss_dssp CSSS
T ss_pred cCCC
Confidence 8543
No 28
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.93 E-value=1.4e-24 Score=206.60 Aligned_cols=175 Identities=22% Similarity=0.404 Sum_probs=138.5
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccC----C-------CeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeee
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPF----G-------PVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEI 445 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~----g-------~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~ 445 (647)
.++|||+|||+.+++++|+++|+.| | .|..+.+. .++|||||+|.+.++|.+|| .|+|. .|
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~-~~ 75 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGI-IF 75 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTE-EE
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCC-EE
Confidence 4899999999999999999999999 5 56666553 34899999999999999999 89995 79
Q ss_pred CCeEEEEEeecCCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccC
Q 006380 446 VGRTLKVSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLP 525 (647)
Q Consensus 446 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (647)
.|+.|.|.++............. ...
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~----------------------------------------------------~~~-- 101 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENP----------------------------------------------------SVY-- 101 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCS----------------------------------------------------SCC--
T ss_pred cCceEEEeCCCCCCCCCCCcCCC----------------------------------------------------cCC--
Confidence 99999999987432211000000 000
Q ss_pred ccCCCCCCCCCCCCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCC-----
Q 006380 526 VVGQPAVPVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRS----- 600 (647)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~----- 600 (647)
.++ ........+..+|+|.|| |..++ +++|.++|++||.|..|.+..+.
T Consensus 102 --------~~~--------~~~~~~~~~~~~l~v~nl--~~~~~--------~~~l~~~f~~~G~v~~~~~~~~~~~~~~ 155 (198)
T 2yh0_A 102 --------VPG--------VVSTVVPDSAHKLFIGGL--PNYLN--------DDQVKELLTSFGPLKAFNLVKDSATGLS 155 (198)
T ss_dssp --------CTT--------SSCCCSSCCCCEEEEECC--CTTCC--------HHHHHHHHHTBSCEEEEEEEECTTTCSE
T ss_pred --------CCC--------CccCCCCCCCCEEEEeCC--CCCCC--------HHHHHHHHHHcCCccEEEEeecCCCCCc
Confidence 000 000011245678999999 88887 79999999999999999987653
Q ss_pred CceEEEEeCCHHHHHHHHHHhcCcccCCeEEEEEEcChh
Q 006380 601 AGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPE 639 (647)
Q Consensus 601 ~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l~v~~~~~~ 639 (647)
+|+|||+|.+.++|.+|+..|||..|+|+.|.|.|+.+.
T Consensus 156 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 194 (198)
T 2yh0_A 156 KGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVG 194 (198)
T ss_dssp EEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 889999999999999999999999999999999998775
No 29
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.92 E-value=1.1e-24 Score=202.16 Aligned_cols=153 Identities=24% Similarity=0.421 Sum_probs=133.7
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccC----C-------CeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeee
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPF----G-------PVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEI 445 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~----g-------~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~ 445 (647)
.++|||+|||+.+++++|+++|+.| | .|..+.+..+ +|||||+|.+.++|.+|+ .|++. .+
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~------~g~afV~f~~~~~A~~A~-~~~~~-~~ 75 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI-IF 75 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT------TTEEEEEESSHHHHHHHG-GGTTC-EE
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC------CCEEEEEeCCHHHHHHHH-HhCCc-Ee
Confidence 3899999999999999999999999 6 7777777543 799999999999999999 89995 79
Q ss_pred CCeEEEEEeecCCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccC
Q 006380 446 VGRTLKVSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLP 525 (647)
Q Consensus 446 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (647)
.|+.|.|.++.....
T Consensus 76 ~g~~i~v~~~~~~~~----------------------------------------------------------------- 90 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQP----------------------------------------------------------------- 90 (172)
T ss_dssp TTEECEEECCSSCCC-----------------------------------------------------------------
T ss_pred cCceeeecCCcccCC-----------------------------------------------------------------
Confidence 999999988652100
Q ss_pred ccCCCCCCCCCCCCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCC-----
Q 006380 526 VVGQPAVPVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRS----- 600 (647)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~----- 600 (647)
.....+|+|.|| |..++ +++|.++|++||.|..|.+..+.
T Consensus 91 -------------------------~~~~~~l~v~nl--p~~~t--------~~~l~~~f~~~G~v~~v~i~~~~~~g~~ 135 (172)
T 2g4b_A 91 -------------------------LPGAHKLFIGGL--PNYLN--------DDQVKELLTSFGPLKAFNLVKDSATGLS 135 (172)
T ss_dssp -------------------------CTTTTCEEEECC--CTTCC--------HHHHHHHHHTTSCEEEEEEEECTTTCSE
T ss_pred -------------------------CCCCCEEEEEcC--CCcCC--------HHHHHHHHHhcCCceEEEEEecCCCCCc
Confidence 112358999999 88887 79999999999999999986653
Q ss_pred CceEEEEeCCHHHHHHHHHHhcCcccCCeEEEEEEcC
Q 006380 601 AGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMK 637 (647)
Q Consensus 601 ~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l~v~~~~ 637 (647)
+|+|||+|.+.++|.+|+..|||..|+|+.|.|.|++
T Consensus 136 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 136 KGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 7899999999999999999999999999999999974
No 30
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.92 E-value=1.6e-24 Score=205.86 Aligned_cols=173 Identities=18% Similarity=0.232 Sum_probs=138.4
Q ss_pred CCceEEeccCC-ccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeeccc
Q 006380 219 DQRTVFAYQMP-LKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVG 297 (647)
Q Consensus 219 ~~~~v~i~nlp-~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (647)
++.+|||+||| ..+|+++|.++|++||.|.+|+|+.++ +|||
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~a-------------------------------- 45 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAA-------------------------------- 45 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCE--------------------------------
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEE--------------------------------
Confidence 56899999999 899999999999999999999998753 6888
Q ss_pred ceEeecCCccccccCCcccccceeeEEecCCcCHHHHHH-hcCccccCccccCCCChhhhhhhcc-----ccc-----CC
Q 006380 298 MVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQS-----NTS-----AG 366 (647)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~-l~g~~~~g~~l~v~~~~~~~~~~~~-----~~~-----~~ 366 (647)
||+|.+.++|..|+. |||..+.|+.|.|.++......... ... ..
T Consensus 46 ------------------------fV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~ 101 (205)
T 3tyt_A 46 ------------------------MVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFS 101 (205)
T ss_dssp ------------------------EEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCCCCCSCCBCTTSCBSEEECT
T ss_pred ------------------------EEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCccCCCcccccccCCccccccC
Confidence 999999999999995 9999999999999876432210000 000 00
Q ss_pred C----C-------CCCCCCCCCceEEEcCCCCCCCHHHHHHhhccCCCe--eEEEeccCCCCCCeeeEEEEEeCCHHHHH
Q 006380 367 G----T-------ATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPV--ELVQLPLDIETGQCKGFGFVQFAQLEHAK 433 (647)
Q Consensus 367 ~----~-------~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i--~~v~i~~~~~~~~~~g~afV~f~~~~~A~ 433 (647)
. . ......+++.+|||+|||+.+++++|+++|++||.| ..|.++.+. +..+|+|||+|.+.++|.
T Consensus 102 ~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~ 179 (205)
T 3tyt_A 102 ESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDAL 179 (205)
T ss_dssp TCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHH
T ss_pred CCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHH
Confidence 0 0 000122456899999999999999999999999999 899998874 455799999999999999
Q ss_pred HHHHHHcCCeeeCCe----EEEEEee
Q 006380 434 AAQSALNGKLEIVGR----TLKVSSV 455 (647)
Q Consensus 434 ~Al~~l~g~~~~~g~----~l~v~~~ 455 (647)
+||..|||. .|.|. ++.|.+|
T Consensus 180 ~Ai~~lng~-~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 180 ETLGFLNHY-QMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HHHHHHTTC-EECCSSSSSCEECEEE
T ss_pred HHHHHhCCC-CccCCCCCcceEEEec
Confidence 999999996 78876 4666554
No 31
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.91 E-value=3.3e-24 Score=208.56 Aligned_cols=176 Identities=18% Similarity=0.287 Sum_probs=144.1
Q ss_pred CCCCCCceEEeccCCc-cCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeee
Q 006380 215 DPERDQRTVFAYQMPL-KATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLV 293 (647)
Q Consensus 215 ~~~~~~~~v~i~nlp~-~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (647)
.+..++++|||+|||+ .+|+++|.++|++||.|..|.|+.++ +|||
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~a---------------------------- 75 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENA---------------------------- 75 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCE----------------------------
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEE----------------------------
Confidence 3456789999999999 99999999999999999999999875 5777
Q ss_pred ecccceEeecCCccccccCCcccccceeeEEecCCcCHHHHHH-hcCccccCccccCCCChhhhhhhccccc--------
Q 006380 294 AEVGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTS-------- 364 (647)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~-l~g~~~~g~~l~v~~~~~~~~~~~~~~~-------- 364 (647)
||+|.+.++|..|+. |+|..+.|+.|.|.++............
T Consensus 76 ----------------------------fV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~ 127 (229)
T 2adc_A 76 ----------------------------LVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKD 127 (229)
T ss_dssp ----------------------------EEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEE
T ss_pred ----------------------------EEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCccccCccccccccccccc
Confidence 999999999999995 9999999999999876533111000000
Q ss_pred -----------CCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHhhccCC-CeeEEEeccCCCCCCeeeEEEEEeCCHHHH
Q 006380 365 -----------AGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFG-PVELVQLPLDIETGQCKGFGFVQFAQLEHA 432 (647)
Q Consensus 365 -----------~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~g-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A 432 (647)
..........++..+|||+|||..+++++|+++|+.|| .|..|.|+.. .+|+|||+|.+.++|
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A 202 (229)
T 2adc_A 128 YGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEA 202 (229)
T ss_dssp CTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHH
T ss_pred cccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHH
Confidence 00000011234568999999999999999999999999 9999999653 278999999999999
Q ss_pred HHHHHHHcCCeeeC-CeEEEEEeecC
Q 006380 433 KAAQSALNGKLEIV-GRTLKVSSVTD 457 (647)
Q Consensus 433 ~~Al~~l~g~~~~~-g~~l~v~~~~~ 457 (647)
.+|+..|+|. .|. |+.|.|.|+.+
T Consensus 203 ~~Ai~~l~g~-~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 203 VQALIDLHNH-DLGENHHLRVSFSKS 227 (229)
T ss_dssp HHHHHHHTTC-BSSSSCBCEEEECSS
T ss_pred HHHHHHHCCC-ccCCCCeEEEEEecC
Confidence 9999999996 788 99999999875
No 32
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.91 E-value=1.4e-24 Score=219.74 Aligned_cols=172 Identities=20% Similarity=0.311 Sum_probs=143.0
Q ss_pred CCceEEeccCCccCCHHHHHHHHHhcC-CceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeeccc
Q 006380 219 DQRTVFAYQMPLKATERDVYEFFSKAG-KVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVG 297 (647)
Q Consensus 219 ~~~~v~i~nlp~~~te~~l~~~f~~~G-~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (647)
...+|||+|||+.+|+++|.++|.+|| .|..|.++.++. |.++|||
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~a-------------------------------- 162 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFA-------------------------------- 162 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEE--------------------------------
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEE--------------------------------
Confidence 578999999999999999999999999 999999999876 7788988
Q ss_pred ceEeecCCccccccCCcccccceeeEEecCCcCHHHHHH-hcCccccCccccCCCChhhhhhhcccccCCCCCCCCCCCC
Q 006380 298 MVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAI 376 (647)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~-l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (647)
||+|.+.++|..|+. |+|..+.|..|.|.++.+....... ......
T Consensus 163 ------------------------fV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~---------~~~~~~ 209 (292)
T 2ghp_A 163 ------------------------YIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRT---------DSATLE 209 (292)
T ss_dssp ------------------------EEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC------------------CCT
T ss_pred ------------------------EEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccc---------cccCCC
Confidence 999999999999996 9999999999999876543322111 112234
Q ss_pred CceEEEcCCCCC-CCHHHHHHhhccCCCeeEEEeccCCC-CCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEe
Q 006380 377 DRKLYVGNLHFN-MTETQLRKLFEPFGPVELVQLPLDIE-TGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 454 (647)
Q Consensus 377 ~~~l~v~nLp~~-~~e~~l~~~f~~~g~i~~v~i~~~~~-~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~ 454 (647)
..+|||+|||.. +++++|+++|+.||.|..|.|+.+.. ||.++|||||+|.+.++|.+|+ .|||. .|+|+.|.|.|
T Consensus 210 ~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~-~~~g~~i~V~~ 287 (292)
T 2ghp_A 210 GREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRS-LLGNREISVSL 287 (292)
T ss_dssp TTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTE-EETTEEEEEEE
T ss_pred CceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCC-EECCcEEEEEE
Confidence 589999999999 99999999999999999999999875 4999999999999999999999 99995 79999999999
Q ss_pred ecCC
Q 006380 455 VTDH 458 (647)
Q Consensus 455 ~~~~ 458 (647)
+.++
T Consensus 288 a~~k 291 (292)
T 2ghp_A 288 ADKK 291 (292)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 9853
No 33
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.91 E-value=4.3e-24 Score=215.08 Aligned_cols=175 Identities=22% Similarity=0.359 Sum_probs=142.9
Q ss_pred CCCCceEEeccCCccCCHHHHH----HHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeee
Q 006380 217 ERDQRTVFAYQMPLKATERDVY----EFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFL 292 (647)
Q Consensus 217 ~~~~~~v~i~nlp~~~te~~l~----~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (647)
..+.++|||+|||+.+|+++|+ ++|.+||.|..|.++. ++.++|||
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~a--------------------------- 55 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQA--------------------------- 55 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEE---------------------------
Confidence 3568999999999999999966 9999999999999886 67889999
Q ss_pred eecccceEeecCCccccccCCcccccceeeEEecCCcCHHHHH-HhcCccccCccccCCCChhhhhhhc-----------
Q 006380 293 VAEVGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQ----------- 360 (647)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al-~l~g~~~~g~~l~v~~~~~~~~~~~----------- 360 (647)
||+|.+.++|..|+ .|||..+.|+.|.|.++........
T Consensus 56 -----------------------------fV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~ 106 (282)
T 3pgw_A 56 -----------------------------FVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDR 106 (282)
T ss_pred -----------------------------EEEECCHHHHHHHHHHhcCCeeCCcEEEEEEeccCcchhhhhcCCcccchh
Confidence 99999999999999 6999999999999976543221000
Q ss_pred -------------------c-ccc-----------------------------------------CCC------------
Q 006380 361 -------------------S-NTS-----------------------------------------AGG------------ 367 (647)
Q Consensus 361 -------------------~-~~~-----------------------------------------~~~------------ 367 (647)
. ... ..+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~ 186 (282)
T 3pgw_A 107 KREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMP 186 (282)
T ss_pred hhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCccccCcccCc
Confidence 0 000 000
Q ss_pred -----------CCCCCCCCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHH
Q 006380 368 -----------TATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 436 (647)
Q Consensus 368 -----------~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al 436 (647)
.......++.++|||+|||..+++++|+++|+.||.|..|.|+.+. +|||||+|.+.++|.+|+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~ 261 (282)
T 3pgw_A 187 PQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAAR 261 (282)
T ss_pred ccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHH
Confidence 0000123346889999999999999999999999999999998764 689999999999999999
Q ss_pred HHHcCCeeeC-CeEEEEEeec
Q 006380 437 SALNGKLEIV-GRTLKVSSVT 456 (647)
Q Consensus 437 ~~l~g~~~~~-g~~l~v~~~~ 456 (647)
..|+|. .|. |+.|.|.|++
T Consensus 262 ~~l~g~-~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 262 DALQGF-KITQNNAMKISFAK 281 (282)
T ss_pred HHcCCc-EeCCCCEEEEEEec
Confidence 999996 788 9999999985
No 34
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.91 E-value=4e-24 Score=203.35 Aligned_cols=171 Identities=18% Similarity=0.303 Sum_probs=141.2
Q ss_pred CceEEeccCCc-cCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecccc
Q 006380 220 QRTVFAYQMPL-KATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVGM 298 (647)
Q Consensus 220 ~~~v~i~nlp~-~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (647)
+++|||+|||+ .+|+++|.++|++||.|..|.++.++ +|||
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~a--------------------------------- 44 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENA--------------------------------- 44 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCC---------------------------------
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEE---------------------------------
Confidence 58999999999 99999999999999999999998875 5777
Q ss_pred eEeecCCccccccCCcccccceeeEEecCCcCHHHHHH-hcCccccCccccCCCChhhhhhhcccc--------------
Q 006380 299 VFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNT-------------- 363 (647)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~-l~g~~~~g~~l~v~~~~~~~~~~~~~~-------------- 363 (647)
||+|.+.++|..|+. |+|..+.|..|.|.++...........
T Consensus 45 -----------------------fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (198)
T 1qm9_A 45 -----------------------LVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSP 101 (198)
T ss_dssp -----------------------EEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCC
T ss_pred -----------------------EEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcCCCCcCCccccccccccCCc
Confidence 999999999999995 999999999999976543211100000
Q ss_pred -----cCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHhhccCC-CeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHH
Q 006380 364 -----SAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEPFG-PVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQS 437 (647)
Q Consensus 364 -----~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~g-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~ 437 (647)
...........++..+|||+|||..+++++|+++|+.|| .|..|.|+.+. +|+|||+|.+.++|.+|+.
T Consensus 102 ~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~ 176 (198)
T 1qm9_A 102 LHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALI 176 (198)
T ss_dssp TTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHH
T ss_pred hhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHH
Confidence 000001112234578999999999999999999999999 99999997643 7999999999999999999
Q ss_pred HHcCCeeeC-CeEEEEEeecC
Q 006380 438 ALNGKLEIV-GRTLKVSSVTD 457 (647)
Q Consensus 438 ~l~g~~~~~-g~~l~v~~~~~ 457 (647)
.|+|. .|+ |+.|.|.|+.+
T Consensus 177 ~l~g~-~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 177 DLHNH-DLGENHHLRVSFSKS 196 (198)
T ss_dssp HHTSS-CCSSCCSCCEEEECC
T ss_pred HhcCC-ccCCCCeEEEEeecc
Confidence 99996 688 99999999875
No 35
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.91 E-value=2.3e-23 Score=206.79 Aligned_cols=151 Identities=26% Similarity=0.422 Sum_probs=134.8
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
.++|||+|||+.+++++|+++|+.||.|..|.|.++ +|||||+|.+.++|..|+..|+|. .|.|+.|.|.++.
T Consensus 22 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~-~i~g~~l~v~~a~ 94 (261)
T 3sde_A 22 RCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGT-ILKSRPLRIRFAT 94 (261)
T ss_dssp GGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTC-EETTEECEEEECC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCc-EECCceeEeeecc
Confidence 479999999999999999999999999999999654 799999999999999999999996 7999999999875
Q ss_pred CCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhhhhcCCccccCCcCCCCCCCCCccccccccccCccCCCCCCCCC
Q 006380 457 DHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKLDRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPA 536 (647)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (647)
+
T Consensus 95 ~------------------------------------------------------------------------------- 95 (261)
T 3sde_A 95 H------------------------------------------------------------------------------- 95 (261)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred CCCCCcccccccccCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC----CCceEEEEeCCHH
Q 006380 537 VTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR----SAGFVYLRFESTE 612 (647)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~----~~g~afV~F~~~~ 612 (647)
..+|+|.|| |..++ +++|.++|+.||.|..|.|..+ ++|+|||+|.+.+
T Consensus 96 -----------------~~~l~v~nl--~~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~ 148 (261)
T 3sde_A 96 -----------------GAALTVKNL--SPVVS--------NELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKP 148 (261)
T ss_dssp -----------------SSEEEEESC--CTTCC--------HHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHH
T ss_pred -----------------CCcccccCC--CCCCC--------HHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHH
Confidence 247999999 88887 7999999999999999988644 4789999999999
Q ss_pred HHHHHHHHhc-CcccC---CeEEEEEEcChhh
Q 006380 613 AAASAQRAMH-MRWFA---RRLISAIFMKPED 640 (647)
Q Consensus 613 ~A~~A~~~l~-g~~~~---Gr~l~v~~~~~~~ 640 (647)
+|.+|+..|| |..+. |++|.|.++.+.+
T Consensus 149 ~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 149 PARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp HHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred HHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 9999999995 44544 9999999987654
No 36
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.91 E-value=8.5e-24 Score=209.88 Aligned_cols=157 Identities=25% Similarity=0.395 Sum_probs=141.0
Q ss_pred CCCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecc
Q 006380 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEV 296 (647)
Q Consensus 217 ~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (647)
....++|||+|||+.+|+++|.++|++||.|..|.|.. ++|||
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~a------------------------------- 61 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFG------------------------------- 61 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEE-------------------------------
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEE-------------------------------
Confidence 45678999999999999999999999999999999954 36888
Q ss_pred cceEeecCCccccccCCcccccceeeEEecCCcCHHHHHH-hcCccccCccccCCCChhhhhhhcccccCCCCCCCCCCC
Q 006380 297 GMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGA 375 (647)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~-l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (647)
||+|.+.++|..|+. ++|..+.|..|.|.++..
T Consensus 62 -------------------------fV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~--------------------- 95 (261)
T 3sde_A 62 -------------------------FIRLESRTLAEIAKAELDGTILKSRPLRIRFATH--------------------- 95 (261)
T ss_dssp -------------------------EEECSSHHHHHHHHHHHTTCEETTEECEEEECCC---------------------
T ss_pred -------------------------EEEECCHHHHHHHHHHcCCcEECCceeEeeeccc---------------------
Confidence 999999999999995 999999999999987632
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeC---CeEEEE
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIV---GRTLKV 452 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~---g~~l~v 452 (647)
..+|||+|||+.+++++|+++|+.||.|..|.|+.+. +|.++|||||+|.+.++|.+||..|++...+. +++|.|
T Consensus 96 -~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 96 -GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp -SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred -CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 2799999999999999999999999999999999995 99999999999999999999999995432344 899999
Q ss_pred EeecCC
Q 006380 453 SSVTDH 458 (647)
Q Consensus 453 ~~~~~~ 458 (647)
.++...
T Consensus 174 ~~~~~~ 179 (261)
T 3sde_A 174 EPMEQF 179 (261)
T ss_dssp EECCCE
T ss_pred eecccc
Confidence 998754
No 37
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.84 E-value=7.9e-21 Score=160.70 Aligned_cols=97 Identities=42% Similarity=0.733 Sum_probs=92.1
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-CCceEEEEeCCHHHHHHHHHHhcCcccCCe
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-SAGFVYLRFESTEAAASAQRAMHMRWFARR 629 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr 629 (647)
..++++|+|.||++|.++.|+.||.+|++||+++|++||.|..|.|+.+ ++|+|||+|.+.++|.+|++.|||++|+|+
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 3578899999999999999999999999999999999999999999766 489999999999999999999999999999
Q ss_pred EEEEEEcChhhhhhccCC
Q 006380 630 LISAIFMKPEDYEAKFKS 647 (647)
Q Consensus 630 ~l~v~~~~~~~~~~~~~~ 647 (647)
.|.|.|++++.|..+||+
T Consensus 84 ~i~v~~~~~~~y~~~fp~ 101 (114)
T 3s6e_A 84 MITAAYVPLPTYHNLFPD 101 (114)
T ss_dssp ECEEEEECHHHHHHHCGG
T ss_pred EEEEEEEcHHHHHHhCcc
Confidence 999999999999999984
No 38
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.81 E-value=6.9e-20 Score=153.30 Aligned_cols=94 Identities=34% Similarity=0.548 Sum_probs=88.5
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-------CCceEEEEeCCHHHHHHHHHHhcC
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-------SAGFVYLRFESTEAAASAQRAMHM 623 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-------~~g~afV~F~~~~~A~~A~~~l~g 623 (647)
+.|+++|+|.||++|..+.++.+|.+|+++|+++|++||.|.+|.|+.+ ++|+|||+|.++++|.+|++.|||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 4688999999999999999999999999999999999999999999754 579999999999999999999999
Q ss_pred cccCCeEEEEEEcChhhhhhc
Q 006380 624 RWFARRLISAIFMKPEDYEAK 644 (647)
Q Consensus 624 ~~~~Gr~l~v~~~~~~~~~~~ 644 (647)
+.|+|++|+|.|++++.|.+.
T Consensus 82 ~~f~GR~i~v~~~~~~~f~~~ 102 (105)
T 3v4m_A 82 RKFANRVVVTKYCDPDSYHRR 102 (105)
T ss_dssp CEETTEECEEEEECHHHHHTT
T ss_pred CEeCCCEEEEEEeCHHHHhhc
Confidence 999999999999999999864
No 39
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.76 E-value=3.6e-18 Score=155.69 Aligned_cols=134 Identities=22% Similarity=0.248 Sum_probs=100.0
Q ss_pred eEEecCCcCHHHHHH-hcCccccCccccCCCChhhhhhhcccccCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHhhcc
Q 006380 322 YIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLFEP 400 (647)
Q Consensus 322 fv~f~~~~~a~~al~-l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~ 400 (647)
||+|.+.++|.+|+. +++.......+.+........ ..................+|||+|||+.+++++|+++|+.
T Consensus 17 fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~ 93 (158)
T 2kn4_A 17 TTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFT---VTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFEK 93 (158)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEE---EECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccc---ccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 999999999999994 554332222222111100000 0000011111222334589999999999999999999999
Q ss_pred CCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecCCC
Q 006380 401 FGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHV 459 (647)
Q Consensus 401 ~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~~~ 459 (647)
||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|+|. .|.|+.|.|.++.+..
T Consensus 94 ~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 94 YGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA-VLDGRELRVQMARYGR 151 (158)
T ss_dssp HSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTE-ESSSSEEEEEEECCSS
T ss_pred cCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCC-EECCeEEEEEECCCCC
Confidence 999999999999889999999999999999999999999995 7999999999998643
No 40
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.75 E-value=1.9e-17 Score=150.83 Aligned_cols=78 Identities=23% Similarity=0.381 Sum_probs=71.4
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCHHHHHHHHHHhcCccc
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAMHMRWF 626 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~~~A~~A~~~l~g~~~ 626 (647)
.+..+|||.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+.++|.+|+..|||..|
T Consensus 68 ~~~~~l~v~nl--~~~~~--------~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 137 (158)
T 2kn4_A 68 EGMTSLKVDNL--TYRTS--------PDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL 137 (158)
T ss_dssp CBCCEEEEESC--CTTCC--------HHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEES
T ss_pred CCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 34578999999 88888 8999999999999999999654 589999999999999999999999999
Q ss_pred CCeEEEEEEcChh
Q 006380 627 ARRLISAIFMKPE 639 (647)
Q Consensus 627 ~Gr~l~v~~~~~~ 639 (647)
.|+.|.|.|+.+.
T Consensus 138 ~g~~l~v~~a~~~ 150 (158)
T 2kn4_A 138 DGRELRVQMARYG 150 (158)
T ss_dssp SSSEEEEEEECCS
T ss_pred CCeEEEEEECCCC
Confidence 9999999998765
No 41
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.75 E-value=6.7e-18 Score=152.27 Aligned_cols=139 Identities=15% Similarity=0.197 Sum_probs=110.0
Q ss_pred CCCeeeEEEEEeCCHHHHHHHHHHH-cCCeeeCCeEEEEEeecCCCCCCCccccCCCCCCCCCCCcccchhhHHHHHHhh
Q 006380 415 TGQCKGFGFVQFAQLEHAKAAQSAL-NGKLEIVGRTLKVSSVTDHVGTQDTAAKSADFDDDDGGGLALNAQSRALLMQKL 493 (647)
Q Consensus 415 ~~~~~g~afV~f~~~~~A~~Al~~l-~g~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (647)
....+|+++|+|.+.++|.+|+..+ +|. .++| .|.+.++............
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~-~~~G-~~~~~~a~~~~~~~~~~~~-------------------------- 60 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDN-GVDG-EWTYDDATKTFTVTEGSHH-------------------------- 60 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHH-TCCC-EEEEETTTTEEEEECSSSS--------------------------
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCC-CCCC-ceecccccCcccccccccc--------------------------
Confidence 4456899999999999999999999 896 7999 9999876521100000000
Q ss_pred hhcCCccccCCcCCCCCCCCCccccccccccCccCCCCCCCCCCCCCCcccccccccCCCCceEEecCcCCCCCCCCchh
Q 006380 494 DRTGIATSIAGSLGVAPAVNGSAVNQQAISLPVVGQPAVPVPAVTAPVIPNMAAEFIGSPSECLLLKNMFDPAMETDPDF 573 (647)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~Nl~~p~~~~d~~~ 573 (647)
. ..........+.++|||.|| |..++
T Consensus 61 -------------------------------~-----------------~~~~~~~~~~~~~~l~V~nl--~~~~t---- 86 (150)
T 2i2y_A 61 -------------------------------H-----------------HHHMHRDSCPLDCKVYVGNL--GNNGN---- 86 (150)
T ss_dssp -------------------------------C-----------------CCCSCSSSSTTSCEEEEESC--CSCCS----
T ss_pred -------------------------------c-----------------cccccccCCCCCCEEEEeCC--CCCCC----
Confidence 0 00000001345678999999 88887
Q ss_pred hhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCCeEEEEEEcChh
Q 006380 574 DLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPE 639 (647)
Q Consensus 574 ~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l~v~~~~~~ 639 (647)
+++|.++|++||.|..|.|..+++|+|||+|.+.++|.+|+..|||..|.|+.|+|.|+.+.
T Consensus 87 ----~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 87 ----KTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp ----CHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred ----HHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999888999999999999999999999999999999999998764
No 42
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.72 E-value=1.1e-17 Score=142.41 Aligned_cols=88 Identities=27% Similarity=0.535 Sum_probs=78.8
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC---------CCceEEEEeCCHHHHHHHHHHhc
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR---------SAGFVYLRFESTEAAASAQRAMH 622 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~---------~~g~afV~F~~~~~A~~A~~~l~ 622 (647)
+|+++|+|.||++|.++. .+|++||+++|++||.|.+|.|+.+ ++|+|||+|.++++|.+|++.||
T Consensus 18 ~ps~vl~L~Nm~~~~el~-----ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~Ln 92 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDID-----DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALN 92 (118)
T ss_dssp HSCCEEEEESCSCGGGCC-----TTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCHHHHH-----HHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHC
Confidence 478899999999987654 4578999999999999999998643 24899999999999999999999
Q ss_pred CcccCCeEEEEEEcChhhhhhc
Q 006380 623 MRWFARRLISAIFMKPEDYEAK 644 (647)
Q Consensus 623 g~~~~Gr~l~v~~~~~~~~~~~ 644 (647)
|++|+|++|.|.|++++.|.+.
T Consensus 93 Gr~f~GR~i~v~~~~~~~f~~~ 114 (118)
T 3ue2_A 93 GRWFAGRKVVAEVYDQERFDNS 114 (118)
T ss_dssp TCEETTEECEEEEECHHHHHTT
T ss_pred CCEECCcEEEEEEcChHhcccc
Confidence 9999999999999999999863
No 43
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.72 E-value=3.3e-17 Score=135.81 Aligned_cols=80 Identities=36% Similarity=0.540 Sum_probs=76.5
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
.++|||+|||+.+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||. .|.|++|.|.||.
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~-~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGL-RLQSKTIKVSYAR 97 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCC-EECCEEEEEEEee
Confidence 378999999999999999999999999999999999989999999999999999999999999996 7999999999987
Q ss_pred C
Q 006380 457 D 457 (647)
Q Consensus 457 ~ 457 (647)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 44
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.71 E-value=3.6e-17 Score=136.63 Aligned_cols=89 Identities=27% Similarity=0.496 Sum_probs=78.1
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC------CCceEEEEeCCHHHHHHHHHHhcCc
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR------SAGFVYLRFESTEAAASAQRAMHMR 624 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~------~~g~afV~F~~~~~A~~A~~~l~g~ 624 (647)
+.++++|+|.||++|.++. .+++++|+++|++||.|..|.|+.+ ++|+|||+|.+.++|.+|++.|||+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~-----dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~ 79 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVD-----EDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGR 79 (105)
T ss_dssp GSCCSEEEEESSSCSCCC--------CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEcCCChHHhh-----HHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCC
Confidence 4678999999998877553 3458999999999999999998643 4899999999999999999999999
Q ss_pred ccCCeEEEEEEcChhhhhhc
Q 006380 625 WFARRLISAIFMKPEDYEAK 644 (647)
Q Consensus 625 ~~~Gr~l~v~~~~~~~~~~~ 644 (647)
.|.|++|.|.|++++.|...
T Consensus 80 ~~~Gr~i~v~~a~~~~f~~~ 99 (105)
T 2pe8_A 80 YFGGRVVKACFYNLDKFRVL 99 (105)
T ss_dssp EETTEECEEEECCHHHHHTT
T ss_pred EECCcEEEEEEcCHHHhhhh
Confidence 99999999999999999764
No 45
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.71 E-value=1.3e-17 Score=150.28 Aligned_cols=135 Identities=21% Similarity=0.296 Sum_probs=108.7
Q ss_pred ccceeeEEecCCcCHHHHH-Hh-cCccccCccccCCCChhhhhhhcccccCCCCCCCCCCCCCceEEEcCCCCCCCHHHH
Q 006380 317 LVSYRYIEFYDVMSVPMAI-AL-SGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQL 394 (647)
Q Consensus 317 ~~~~afv~f~~~~~a~~al-~l-~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l 394 (647)
..++++|+|.+.+.|.+|+ ++ ||..+.| .+.+.++.........................++|||+|||+.+++++|
T Consensus 12 l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l 90 (150)
T 2i2y_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTEL 90 (150)
T ss_dssp SCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHHH
T ss_pred ccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHH
Confidence 4567799999999999999 58 9999999 8888876543222111111111222233345699999999999999999
Q ss_pred HHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecCC
Q 006380 395 RKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDH 458 (647)
Q Consensus 395 ~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~~ 458 (647)
+++|+.||.|..|.|+.+ ++|||||+|.+.++|..|+..|+|. .|.|+.|.|.|+.+.
T Consensus 91 ~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 91 ERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGR-TLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSS-CSSSSCCEEEECCCC
T ss_pred HHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCC-EECCeEEEEEEcCCC
Confidence 999999999999999886 4899999999999999999999996 799999999998753
No 46
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.69 E-value=8.4e-17 Score=137.71 Aligned_cols=77 Identities=26% Similarity=0.443 Sum_probs=72.3
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecC
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 457 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~ 457 (647)
.+|||+|||+.+++++|+++|+.||.|..|.|+.+. +.++|||||+|.+.++|.+||..|++. .|.|+.|.|.++.+
T Consensus 6 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~-~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 6 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGM-LLNDRKVFVGRFKS 82 (115)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTC-EETTEECEEEESSC
T ss_pred CEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCC-EECCEEEEEEECCC
Confidence 689999999999999999999999999999999884 558999999999999999999999996 79999999999874
No 47
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.69 E-value=2.8e-17 Score=134.10 Aligned_cols=82 Identities=24% Similarity=0.372 Sum_probs=76.3
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCC-CeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFG-PVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
++|||+|||+.+++++|+++|++|| .|..|.|++++.+|.++|||||+|.+.++|.+||+.+++.+.|+|++|.|.|+.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 7899999999999999999999999 899999999998999999999999999999999988765467999999999998
Q ss_pred CCC
Q 006380 457 DHV 459 (647)
Q Consensus 457 ~~~ 459 (647)
+..
T Consensus 82 ~~~ 84 (91)
T 2lxi_A 82 PKP 84 (91)
T ss_dssp SCC
T ss_pred CCC
Confidence 644
No 48
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.68 E-value=1.2e-16 Score=125.23 Aligned_cols=84 Identities=21% Similarity=0.201 Sum_probs=76.1
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCCeEE
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLI 631 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l 631 (647)
..+..|+|+|| +..++ +++|+++|.+||.|..+.+.. ++|+|||+|.+.++|.+|++.|||..|.|++|
T Consensus 5 ~~~~wL~VgNL--~~~~t--------e~~L~~lF~q~G~V~~~~l~~-~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I 73 (89)
T 2wbr_A 5 WGSSWLLLKNL--TAQID--------GPTLRTLCMQHGPLVSFHPYL-NQGIALCKYTTREEANKAQMALNNCVLANTTI 73 (89)
T ss_dssp CCCCEEEEECC--CTTCC--------CHHHHHHHHHHSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CccceEEEeCC--CccCC--------HHHHHHHHHhhCCEEEEEEcC-CCcEEEEEECCHHHHHHHHHHhcCCEECCcEE
Confidence 44568999999 77777 699999999999999999875 79999999999999999999999999999999
Q ss_pred EEEEcChhhhhhccC
Q 006380 632 SAIFMKPEDYEAKFK 646 (647)
Q Consensus 632 ~v~~~~~~~~~~~~~ 646 (647)
.|.++++.+....++
T Consensus 74 ~V~~A~e~~~~~~~~ 88 (89)
T 2wbr_A 74 FAESPSENEVQSIMQ 88 (89)
T ss_dssp EEECCCHHHHHHHHC
T ss_pred EEEECCHHHHHHHhh
Confidence 999999988776554
No 49
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.68 E-value=8.4e-17 Score=131.69 Aligned_cols=80 Identities=24% Similarity=0.356 Sum_probs=75.0
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCC--eeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCC---eeeCCeEEEE
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGP--VELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK---LEIVGRTLKV 452 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~--i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~---~~~~g~~l~v 452 (647)
.+|||+|||+.+|+++|+++|++||. |..|.|++|+.+|.++|||||+|.+.++|.+||+.|+|. +.|+|++|.|
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V 89 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGV 89 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEE
Confidence 79999999999999999999999995 678999999999999999999999999999999999985 4699999999
Q ss_pred EeecC
Q 006380 453 SSVTD 457 (647)
Q Consensus 453 ~~~~~ 457 (647)
.||++
T Consensus 90 ~~Aks 94 (95)
T 2lkz_A 90 DFAKS 94 (95)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 99874
No 50
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.67 E-value=4.2e-16 Score=131.75 Aligned_cols=81 Identities=22% Similarity=0.275 Sum_probs=77.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEe
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 454 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~ 454 (647)
++.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++.|||. .|.|+.|.|.+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~-~~~gr~i~V~~ 82 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLT-SVMGNIIHAQL 82 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCC-EECCeEEEEEE
Confidence 34589999999999999999999999999999999999989999999999999999999999999996 79999999999
Q ss_pred ec
Q 006380 455 VT 456 (647)
Q Consensus 455 ~~ 456 (647)
+.
T Consensus 83 a~ 84 (110)
T 3s8s_A 83 DI 84 (110)
T ss_dssp CS
T ss_pred CC
Confidence 86
No 51
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.2e-15 Score=125.57 Aligned_cols=84 Identities=30% Similarity=0.527 Sum_probs=77.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEE
Q 006380 372 PYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLK 451 (647)
Q Consensus 372 ~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~ 451 (647)
...+..++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++.|++. .|.|+.|.
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~ 89 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNK-QLFGRVIK 89 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTE-EETTEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCC-eeCCcEEE
Confidence 34455689999999999999999999999999999999999888999999999999999999999999995 89999999
Q ss_pred EEeec
Q 006380 452 VSSVT 456 (647)
Q Consensus 452 v~~~~ 456 (647)
|.|++
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99974
No 52
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.8e-15 Score=124.85 Aligned_cols=83 Identities=33% Similarity=0.527 Sum_probs=77.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEE
Q 006380 374 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 453 (647)
Q Consensus 374 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~ 453 (647)
.++.++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|++. .|.|+.|.|.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v~ 90 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM-ELDGRRIRVS 90 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTE-EETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCC-EECCEEEEEE
Confidence 345689999999999999999999999999999999999888999999999999999999999999994 7999999999
Q ss_pred eecC
Q 006380 454 SVTD 457 (647)
Q Consensus 454 ~~~~ 457 (647)
|+.+
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9863
No 53
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.64 E-value=3.8e-15 Score=127.60 Aligned_cols=86 Identities=27% Similarity=0.489 Sum_probs=79.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEe
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 454 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~ 454 (647)
...++|||+|||..+++++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|.+||..|++. .|.|+.|.|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~~ 91 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ-WLGGRQIRTNW 91 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTC-EETTEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCC-EECCEEEEEEE
Confidence 34689999999999999999999999999999999999889999999999999999999999999995 79999999999
Q ss_pred ecCCCCC
Q 006380 455 VTDHVGT 461 (647)
Q Consensus 455 ~~~~~~~ 461 (647)
+.+....
T Consensus 92 a~~~~~~ 98 (115)
T 2dgo_A 92 ATRKPPA 98 (115)
T ss_dssp SSCCCCC
T ss_pred ccCCCCC
Confidence 9876543
No 54
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=2.4e-15 Score=125.06 Aligned_cols=85 Identities=35% Similarity=0.556 Sum_probs=79.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEee
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 455 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~ 455 (647)
..++|||+|||+.+++++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|.+||..|++. .|.|+.|.|.++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~~a 85 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQ-VFQGRMLHVLPS 85 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTE-ESSSCEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCC-EECCcEEEEEEc
Confidence 4589999999999999999999999999999999999889999999999999999999999999995 799999999999
Q ss_pred cCCCCC
Q 006380 456 TDHVGT 461 (647)
Q Consensus 456 ~~~~~~ 461 (647)
.+....
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 875543
No 55
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.7e-15 Score=126.71 Aligned_cols=85 Identities=38% Similarity=0.601 Sum_probs=79.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEe
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 454 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~ 454 (647)
...++|||+|||+.+++++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|.+|+..|++. .|.|+.|.|.+
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~V~~ 88 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES-ELFGRTIRVNL 88 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTE-EETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCC-EECCcEEEEEe
Confidence 34689999999999999999999999999999999999889999999999999999999999999994 79999999999
Q ss_pred ecCCCC
Q 006380 455 VTDHVG 460 (647)
Q Consensus 455 ~~~~~~ 460 (647)
+.+...
T Consensus 89 a~~~~~ 94 (102)
T 2cqb_A 89 AKPMRI 94 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 986543
No 56
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.63 E-value=1.3e-16 Score=136.47 Aligned_cols=108 Identities=22% Similarity=0.359 Sum_probs=71.5
Q ss_pred CCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecccc
Q 006380 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVGM 298 (647)
Q Consensus 219 ~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (647)
.+.+|||+|||+.+|+++|.++|++||.|.+|+|+.+.. .++|||
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~--~~kg~a--------------------------------- 48 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYG--------------------------------- 48 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEEEEE---------------------------------
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC--CCCceE---------------------------------
Confidence 356899999999999999999999999999999999864 478888
Q ss_pred eEeecCCccccccCCcccccceeeEEecCCcCHHHHH-HhcCccccCccccCCCChhhhhhhcccccCCCCCCCCCCCCC
Q 006380 299 VFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAID 377 (647)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al-~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (647)
||+|.+.++|..|+ .|+|..+.|+.|.|.++......... ........
T Consensus 49 -----------------------fV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~~~~--------~~~~~~~~ 97 (115)
T 4f25_A 49 -----------------------FVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE--------LGARAKEF 97 (115)
T ss_dssp -----------------------EEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC--------------------
T ss_pred -----------------------EEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCccccccc--------cccccCCC
Confidence 99999999999999 59999999999999876543221111 01111223
Q ss_pred ceEEEcCCCCCCCHH
Q 006380 378 RKLYVGNLHFNMTET 392 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~ 392 (647)
..|||+|||+.+|++
T Consensus 98 ~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 98 TNVYIKNFGPGSTRA 112 (115)
T ss_dssp ---------------
T ss_pred CceEeCCCCCCcccc
Confidence 679999999999886
No 57
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3e-15 Score=125.42 Aligned_cols=85 Identities=32% Similarity=0.451 Sum_probs=79.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEE
Q 006380 374 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 453 (647)
Q Consensus 374 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~ 453 (647)
....++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..|++. .|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v~ 90 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGF-GYDHLILNVE 90 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTC-EETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCC-eeCCcEEEEE
Confidence 344699999999999999999999999999999999999889999999999999999999999999995 7999999999
Q ss_pred eecCCC
Q 006380 454 SVTDHV 459 (647)
Q Consensus 454 ~~~~~~ 459 (647)
|+.+..
T Consensus 91 ~a~~~~ 96 (103)
T 2cq0_A 91 WAKPST 96 (103)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 998654
No 58
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.63 E-value=1.4e-15 Score=122.56 Aligned_cols=80 Identities=40% Similarity=0.671 Sum_probs=75.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEee
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 455 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~ 455 (647)
+.++|||+|||+.+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|+..|+|. .|.|+.|.|.|+
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~a 84 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES-ELFGRTIRVNLA 84 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCC-EECCcEEEEEEc
Confidence 4589999999999999999999999999999999999889999999999999999999999999996 799999999987
Q ss_pred c
Q 006380 456 T 456 (647)
Q Consensus 456 ~ 456 (647)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 59
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=3e-15 Score=124.49 Aligned_cols=85 Identities=29% Similarity=0.544 Sum_probs=78.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEE
Q 006380 374 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 453 (647)
Q Consensus 374 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~ 453 (647)
....++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||+ |++. .|.|+.|.|.
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~-~~~g~~l~V~ 84 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFH-DIMGKKVEVK 84 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCC-BSSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCC-EECCeEEEEE
Confidence 3456899999999999999999999999999999999998899999999999999999999997 9995 7999999999
Q ss_pred eecCCCC
Q 006380 454 SVTDHVG 460 (647)
Q Consensus 454 ~~~~~~~ 460 (647)
++.+...
T Consensus 85 ~a~~~~~ 91 (99)
T 2dgs_A 85 RAEPRDS 91 (99)
T ss_dssp ECCCCCC
T ss_pred ECCCCcc
Confidence 9986543
No 60
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.63 E-value=2.2e-15 Score=120.77 Aligned_cols=80 Identities=29% Similarity=0.597 Sum_probs=76.2
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecC
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 457 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~ 457 (647)
.+|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|+|. .|.|+.|.|.++.+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~-~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQ-DLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTC-EETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCC-eeCCcEEEEEecCc
Confidence 68999999999999999999999999999999999889999999999999999999999999996 79999999999985
Q ss_pred C
Q 006380 458 H 458 (647)
Q Consensus 458 ~ 458 (647)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 61
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.63 E-value=1.5e-15 Score=124.04 Aligned_cols=80 Identities=13% Similarity=0.116 Sum_probs=72.5
Q ss_pred cCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcc--cC
Q 006380 550 IGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRW--FA 627 (647)
Q Consensus 550 ~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~--~~ 627 (647)
..+|+++|+|+|| |..++ +++|.++|++||.|..|.+.+ ++|+|||+|.+.++|.+|+..|+|.. |.
T Consensus 17 ~~~ps~~l~V~NL--p~~~t--------e~~L~~lF~~fG~V~~v~i~~-~kg~AFVef~~~~~A~~Av~~ln~~~~~i~ 85 (100)
T 3r27_A 17 KTPASPVVHIRGL--IDGVV--------EADLVEALQEFGPISYVVVMP-KKRQALVEFEDVLGACNAVNYAADNQIYIA 85 (100)
T ss_dssp CCCCCSEEEEESC--CTTCC--------HHHHHHHHGGGSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCEEET
T ss_pred cCCCCcEEEEeCC--CCCCC--------HHHHHHHHhccCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhcCCCceeC
Confidence 3578899999999 98888 899999999999999999875 68999999999999999999999986 78
Q ss_pred CeEEEEEEcChhh
Q 006380 628 RRLISAIFMKPED 640 (647)
Q Consensus 628 Gr~l~v~~~~~~~ 640 (647)
|++|.|+|+..++
T Consensus 86 Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 86 GHPAFVNYSTSQK 98 (100)
T ss_dssp TEEEEEEECSCSC
T ss_pred CcEEEEEeccccc
Confidence 9999999987653
No 62
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.63 E-value=1.9e-15 Score=122.40 Aligned_cols=80 Identities=29% Similarity=0.527 Sum_probs=76.0
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
.++|||+|||..+++++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|..|+..|+|. .|.|+.|.|.|+.
T Consensus 6 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 6 HFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ-WLGGRQIRTNWAT 84 (87)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEEEC
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC-EECCeEEEEEecC
Confidence 489999999999999999999999999999999999889999999999999999999999999995 7999999999997
Q ss_pred C
Q 006380 457 D 457 (647)
Q Consensus 457 ~ 457 (647)
+
T Consensus 85 ~ 85 (87)
T 3bs9_A 85 R 85 (87)
T ss_dssp -
T ss_pred C
Confidence 5
No 63
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.63 E-value=4.1e-16 Score=164.61 Aligned_cols=85 Identities=24% Similarity=0.521 Sum_probs=79.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEe
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 454 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~ 454 (647)
.+.++|||+|||+.+++++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||..|||. .|.|+.|.|.+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~-~i~gr~i~V~~ 178 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGK-KIDGRRVLVDV 178 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCC-EECCEEEEEEE
Confidence 34589999999999999999999999999999999999889999999999999999999999999995 79999999999
Q ss_pred ecCCCC
Q 006380 455 VTDHVG 460 (647)
Q Consensus 455 ~~~~~~ 460 (647)
+.....
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 986543
No 64
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=4.5e-15 Score=126.29 Aligned_cols=85 Identities=29% Similarity=0.501 Sum_probs=79.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHc------CCeeeCCe
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALN------GKLEIVGR 448 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~------g~~~~~g~ 448 (647)
.+.++|||+|||+.+++++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|.+||..|+ + +.|.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~-~~~~g~ 91 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGG-LKLDGR 91 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCC-EESSSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCC-cEEcCE
Confidence 346899999999999999999999999999999999998899999999999999999999999999 8 579999
Q ss_pred EEEEEeecCCCC
Q 006380 449 TLKVSSVTDHVG 460 (647)
Q Consensus 449 ~l~v~~~~~~~~ 460 (647)
.|.|.++.+...
T Consensus 92 ~l~v~~a~~~~~ 103 (111)
T 1x4h_A 92 QLKVDLAVTRDE 103 (111)
T ss_dssp EEEEECCCCCCC
T ss_pred EEEEEECCCCcc
Confidence 999999986543
No 65
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2e-15 Score=126.33 Aligned_cols=85 Identities=35% Similarity=0.644 Sum_probs=79.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEe
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 454 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~ 454 (647)
...++|||+|||+.+++++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|.+||..|++. .|.|+.|.|.+
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v~~ 88 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGK-SVDGRQIRVDQ 88 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTC-CTTSCCCEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCC-EECCeEEEEEE
Confidence 34589999999999999999999999999999999999889999999999999999999999999996 79999999999
Q ss_pred ecCCCC
Q 006380 455 VTDHVG 460 (647)
Q Consensus 455 ~~~~~~ 460 (647)
+.+...
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 986543
No 66
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=6e-15 Score=122.88 Aligned_cols=83 Identities=23% Similarity=0.418 Sum_probs=77.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEe
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 454 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~ 454 (647)
...++|||+|||..+++++|+++|+.||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..|++ ..|.|+.|.|.+
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~~ 92 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDG-MTIKENIIKVAI 92 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTT-EESSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCC-CEECCEEEEEEE
Confidence 345899999999999999999999999999999999998 999999999999999999999999999 479999999999
Q ss_pred ecCCC
Q 006380 455 VTDHV 459 (647)
Q Consensus 455 ~~~~~ 459 (647)
+.+..
T Consensus 93 a~~~~ 97 (100)
T 2do4_A 93 SNSGP 97 (100)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 98543
No 67
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.62 E-value=2.6e-15 Score=124.02 Aligned_cols=82 Identities=32% Similarity=0.573 Sum_probs=77.6
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
+++|||+|||..+++++|+++|+.||.|..|.|+.+..+|.++|||||+|.+.++|.+|+..|+|. .|.|+.|.|.++.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGY-QLGSRFLKCGYSS 80 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEECS
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCC-eECCeEEEEEEcC
Confidence 489999999999999999999999999999999999888999999999999999999999999995 7999999999998
Q ss_pred CCC
Q 006380 457 DHV 459 (647)
Q Consensus 457 ~~~ 459 (647)
+..
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 643
No 68
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=3.4e-15 Score=123.08 Aligned_cols=84 Identities=45% Similarity=0.805 Sum_probs=78.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEee
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 455 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~ 455 (647)
+.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|++. .|.|+.|.|.++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~~a 82 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGF-ELAGRPMRVGHV 82 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTC-CSSSSCCEEEES
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCC-eeCCcEEEEEEc
Confidence 3489999999999999999999999999999999999888999999999999999999999999995 799999999999
Q ss_pred cCCCC
Q 006380 456 TDHVG 460 (647)
Q Consensus 456 ~~~~~ 460 (647)
.+...
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 86543
No 69
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.3e-15 Score=125.67 Aligned_cols=86 Identities=33% Similarity=0.524 Sum_probs=79.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEE
Q 006380 374 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 453 (647)
Q Consensus 374 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~ 453 (647)
....++|||+|||+.+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||..|++. .|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~ 90 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMI-KLYGKPIRVN 90 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSC-BCSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCC-eECCeEEEEE
Confidence 345689999999999999999999999999999999999889999999999999999999999999995 7999999999
Q ss_pred eecCCCC
Q 006380 454 SVTDHVG 460 (647)
Q Consensus 454 ~~~~~~~ 460 (647)
++.+...
T Consensus 91 ~a~~~~~ 97 (105)
T 1x5u_A 91 KASAHNK 97 (105)
T ss_dssp ETTTTSC
T ss_pred ECCCCCc
Confidence 9986543
No 70
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.61 E-value=4.8e-15 Score=126.91 Aligned_cols=85 Identities=28% Similarity=0.406 Sum_probs=79.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEe
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 454 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~ 454 (647)
+..++|||+|||+.+++++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|.+||..|++. .|.|+.|.|.|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~~ 101 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGF-QIGMKRLKVQL 101 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTC-EETTEECEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCC-EECCEEEEEEE
Confidence 44689999999999999999999999999999999999889999999999999999999999999995 79999999999
Q ss_pred ecCCCC
Q 006380 455 VTDHVG 460 (647)
Q Consensus 455 ~~~~~~ 460 (647)
+.+...
T Consensus 102 a~~~~~ 107 (115)
T 2cpz_A 102 KRSKND 107 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCc
Confidence 986543
No 71
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.61 E-value=2.9e-15 Score=122.35 Aligned_cols=80 Identities=20% Similarity=0.225 Sum_probs=71.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCC-eeeCCeEEE
Q 006380 373 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK-LEIVGRTLK 451 (647)
Q Consensus 373 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~-~~~~g~~l~ 451 (647)
..+++++|||+|||+.+++++|.++|++||.|..|.|++. +|+|||+|.+.++|..|+..|++. +.|.|++|.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 3445689999999999999999999999999999999764 789999999999999999999875 458999999
Q ss_pred EEeecCC
Q 006380 452 VSSVTDH 458 (647)
Q Consensus 452 v~~~~~~ 458 (647)
|.|++.+
T Consensus 91 V~~S~~k 97 (100)
T 3r27_A 91 VNYSTSQ 97 (100)
T ss_dssp EEECSCS
T ss_pred EEecccc
Confidence 9999753
No 72
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.61 E-value=3.5e-15 Score=125.91 Aligned_cols=83 Identities=53% Similarity=0.872 Sum_probs=78.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEe
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 454 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~ 454 (647)
+..++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|+|. .|.|+.|.|.+
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~-~i~g~~l~V~~ 102 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGF-ELAGRPMKVGH 102 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTC-CSSSSCCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCC-EECCEEEEEEE
Confidence 34589999999999999999999999999999999999889999999999999999999999999995 79999999999
Q ss_pred ecCC
Q 006380 455 VTDH 458 (647)
Q Consensus 455 ~~~~ 458 (647)
+.++
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 9754
No 73
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.61 E-value=4.1e-15 Score=123.58 Aligned_cols=82 Identities=33% Similarity=0.420 Sum_probs=76.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhccCCCeeE--------EEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeee
Q 006380 374 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVEL--------VQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEI 445 (647)
Q Consensus 374 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~ 445 (647)
.++..+|||+|||..+++++|+++|+.||.|.. |.|+.++.+|.++|||||+|.+.++|.+|++.|+|. .|
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~-~~ 88 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK-EF 88 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC-BS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC-Ee
Confidence 344689999999999999999999999999999 999999889999999999999999999999999996 79
Q ss_pred CCeEEEEEeec
Q 006380 446 VGRTLKVSSVT 456 (647)
Q Consensus 446 ~g~~l~v~~~~ 456 (647)
.|+.|.|.+|+
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999874
No 74
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=4.5e-15 Score=125.34 Aligned_cols=87 Identities=33% Similarity=0.568 Sum_probs=79.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccC-CCCCCeeeEEEEEeCCHHHHHHHHHHH-cCCeeeCCeEE
Q 006380 373 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLD-IETGQCKGFGFVQFAQLEHAKAAQSAL-NGKLEIVGRTL 450 (647)
Q Consensus 373 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~Al~~l-~g~~~~~g~~l 450 (647)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.+ ..++.++|||||+|.+.++|.+||..| ++. .|.|+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~-~~~g~~l 89 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHST-HLYGRRL 89 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCC-BSSSCBC
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCC-eECCCEE
Confidence 3445689999999999999999999999999999999998 778999999999999999999999999 885 7999999
Q ss_pred EEEeecCCCC
Q 006380 451 KVSSVTDHVG 460 (647)
Q Consensus 451 ~v~~~~~~~~ 460 (647)
.|.|+.+...
T Consensus 90 ~v~~a~~~~~ 99 (107)
T 2cph_A 90 VLEWADSEVT 99 (107)
T ss_dssp EEEECCCCCC
T ss_pred EEEeCCCCCC
Confidence 9999986543
No 75
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.7e-15 Score=128.89 Aligned_cols=90 Identities=29% Similarity=0.506 Sum_probs=79.5
Q ss_pred CCCCceEEecCcCCCCC-CCCchhhhhhHHHHHHHhhccCCeEEEEEe-cCCCceEEEEeCCHHHHHHHHHHhcCcccCC
Q 006380 551 GSPSECLLLKNMFDPAM-ETDPDFDLEIQGDVEEECSKYGRVKHIYVD-KRSAGFVYLRFESTEAAASAQRAMHMRWFAR 628 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~-~~d~~~~~~i~edl~~~f~~~G~v~~v~l~-~~~~g~afV~F~~~~~A~~A~~~l~g~~~~G 628 (647)
..++++|+|.||++|.. ..++.+|.+++++|.++|++||.|..|.|. +.++|+|||+|.+.++|.+|+..|||..|.|
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 45678999999987765 345678899999999999999999999774 3479999999999999999999999999999
Q ss_pred eEEEEEEcChhh
Q 006380 629 RLISAIFMKPED 640 (647)
Q Consensus 629 r~l~v~~~~~~~ 640 (647)
++|.|.|+.+..
T Consensus 92 r~l~v~~a~~~~ 103 (112)
T 2dit_A 92 RQITAQAWDGTT 103 (112)
T ss_dssp EECEEEECCSCC
T ss_pred cEEEEEEeCCCC
Confidence 999999998843
No 76
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.60 E-value=7.5e-16 Score=135.59 Aligned_cols=122 Identities=26% Similarity=0.353 Sum_probs=79.5
Q ss_pred eeeEEecCCcCHHHHHH-hcCccccCccccCCCChhhhhhhcccccCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHhh
Q 006380 320 YRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLVQSNTSAGGTATGPYGAIDRKLYVGNLHFNMTETQLRKLF 398 (647)
Q Consensus 320 ~afv~f~~~~~a~~al~-l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f 398 (647)
|+|++|.+...+..||+ ++|....|.... .. ..+.+.....++|||+|||+.+++++|+++|
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~~-~~----------------~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F 68 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGSM-SY----------------GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVF 68 (135)
T ss_dssp -----------------------------C-CS----------------CCSCSSGGGCCCEEEECCCSSCHHHHHHHHH
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCCC-Cc----------------CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 56888888888888884 777665554311 00 0111122234899999999999999999999
Q ss_pred ccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecCCC
Q 006380 399 EPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHV 459 (647)
Q Consensus 399 ~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~~~ 459 (647)
+.||.|..|.|+.+..++.++|||||+|.+.++|.+||..|++. .|.|+.|.|.++.+..
T Consensus 69 ~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~-~i~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 69 EKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA-VLDGRELRVQMARYGR 128 (135)
T ss_dssp GGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTC-CSSSSCCEEEECCCCC
T ss_pred HhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC-EECCEEEEEEECCCCC
Confidence 99999999999999889999999999999999999999999996 7999999999998643
No 77
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=3.4e-15 Score=125.13 Aligned_cols=84 Identities=32% Similarity=0.494 Sum_probs=78.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEe
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 454 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~ 454 (647)
...++|||+|||+.+++++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|.+||..|++. .|.|+.|.|.+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~V~~ 89 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGA-ELDGRELRVQV 89 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSC-CBTTBCCEEEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCC-EECCcEEEEEE
Confidence 34589999999999999999999999999999999999888999999999999999999999999996 79999999999
Q ss_pred ecCCC
Q 006380 455 VTDHV 459 (647)
Q Consensus 455 ~~~~~ 459 (647)
+.+..
T Consensus 90 a~~~~ 94 (103)
T 2dnm_A 90 ARYGR 94 (103)
T ss_dssp CSSCC
T ss_pred CCcCC
Confidence 98643
No 78
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.60 E-value=2.3e-15 Score=124.63 Aligned_cols=76 Identities=17% Similarity=0.321 Sum_probs=69.7
Q ss_pred CCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCHHHHHHHHHHhcCcccC
Q 006380 553 PSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAMHMRWFA 627 (647)
Q Consensus 553 ~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~~~A~~A~~~l~g~~~~ 627 (647)
...+|||+|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+.++|.+|++.|||..|.
T Consensus 18 ~gt~lfV~nL--p~~~t--------e~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~ 87 (99)
T 4fxv_A 18 QGTNLIVNYL--PQNMT--------QDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQ 87 (99)
T ss_dssp CCSEEEEESC--CTTCC--------HHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3457999999 99888 8999999999999999998654 4789999999999999999999999999
Q ss_pred CeEEEEEEcCh
Q 006380 628 RRLISAIFMKP 638 (647)
Q Consensus 628 Gr~l~v~~~~~ 638 (647)
|++|+|.|+.|
T Consensus 88 gr~l~V~~AkP 98 (99)
T 4fxv_A 88 SKTIKVSYARP 98 (99)
T ss_dssp TEECEEEECCB
T ss_pred CEEEEEEEeeC
Confidence 99999999876
No 79
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.2e-15 Score=125.29 Aligned_cols=82 Identities=28% Similarity=0.503 Sum_probs=77.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEee
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 455 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~ 455 (647)
..++|||+|||..+++++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|.+|+..|+|. .|.|+.|.|.++
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~~a 100 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQ-DLMGQPISVDWC 100 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTC-BSSSSBCEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCC-EECCcEEEEEee
Confidence 4589999999999999999999999999999999999889999999999999999999999999996 799999999998
Q ss_pred cCC
Q 006380 456 TDH 458 (647)
Q Consensus 456 ~~~ 458 (647)
.+.
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 754
No 80
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=9.6e-15 Score=122.33 Aligned_cols=84 Identities=32% Similarity=0.541 Sum_probs=77.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEe
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 454 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~ 454 (647)
...++|||+|||+.+++++|+++|+.||.|..|.|+.+ ++.++|||||+|.+.++|.+||..|++. .|.|+.|.|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~V~~ 89 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR-IVATKPLYVAL 89 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTC-BSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCC-EeCCcEEEEEE
Confidence 34689999999999999999999999999999999988 8899999999999999999999999996 79999999999
Q ss_pred ecCCCCC
Q 006380 455 VTDHVGT 461 (647)
Q Consensus 455 ~~~~~~~ 461 (647)
+.+....
T Consensus 90 a~~~~~~ 96 (103)
T 2d9p_A 90 AQRKEER 96 (103)
T ss_dssp CSSCCCC
T ss_pred ecccccC
Confidence 9865543
No 81
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.60 E-value=9.8e-16 Score=127.44 Aligned_cols=80 Identities=28% Similarity=0.429 Sum_probs=76.3
Q ss_pred CceEEEcCCCC------CCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCC-eE
Q 006380 377 DRKLYVGNLHF------NMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG-RT 449 (647)
Q Consensus 377 ~~~l~v~nLp~------~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g-~~ 449 (647)
.++|||+|||+ .+++++|+++|++||.|..|.|+.+..+|.++|||||+|.+.++|.+||..|||. .|.| +.
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~-~~~g~r~ 84 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGK-RLDLKHR 84 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC-BSSSSCB
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCc-ccCCCeE
Confidence 48999999999 9999999999999999999999999988999999999999999999999999996 7999 99
Q ss_pred EEEEeecC
Q 006380 450 LKVSSVTD 457 (647)
Q Consensus 450 l~v~~~~~ 457 (647)
|.|.++.+
T Consensus 85 l~V~~a~~ 92 (100)
T 3ns6_A 85 LFLYTMKD 92 (100)
T ss_dssp CEEEESHH
T ss_pred EEEEECch
Confidence 99999874
No 82
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.60 E-value=9.5e-15 Score=122.85 Aligned_cols=84 Identities=32% Similarity=0.503 Sum_probs=77.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCC---eEEE
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG---RTLK 451 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g---~~l~ 451 (647)
+..++|||+|||+.+++++|+++|+.||.|..|.|+.+. ++.++|||||+|.+.++|.+||..|++. .|.| +.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~gg~~~~l~ 90 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGS-QTMPGASSSLV 90 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSC-CCCTTCSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCC-ccCCCCCccEE
Confidence 446999999999999999999999999999999999998 8999999999999999999999999996 6777 9999
Q ss_pred EEeecCCCC
Q 006380 452 VSSVTDHVG 460 (647)
Q Consensus 452 v~~~~~~~~ 460 (647)
|.|+.+...
T Consensus 91 V~~a~~~~~ 99 (105)
T 2dnh_A 91 VKFADTDKE 99 (105)
T ss_dssp EEESCSSCC
T ss_pred EEECccCcc
Confidence 999986543
No 83
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.60 E-value=9.2e-16 Score=125.02 Aligned_cols=81 Identities=23% Similarity=0.360 Sum_probs=72.0
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCC--CeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEee
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFG--PVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 455 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g--~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~ 455 (647)
.+|||+|||+.+++++|+++|+.|| .|..|.|+.++.+|.++|||||+|.+.++|.+|++.|+|. .|.|+.|.|.++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~-~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKR-ELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGS-CSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCC-eeCCEEEEEEEC
Confidence 4799999999999999999999999 9999999999889999999999999999999999999996 799999999998
Q ss_pred cCCC
Q 006380 456 TDHV 459 (647)
Q Consensus 456 ~~~~ 459 (647)
.+..
T Consensus 81 ~~~~ 84 (90)
T 3p5t_L 81 NKLE 84 (90)
T ss_dssp ----
T ss_pred CCCc
Confidence 8543
No 84
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.9e-15 Score=123.81 Aligned_cols=83 Identities=29% Similarity=0.505 Sum_probs=77.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccCCCeeEE-EeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEe
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELV-QLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 454 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v-~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~ 454 (647)
+.++|||+|||+.+++++|+++|+.||.|..| .|+.++.++.++|||||+|.+.++|.+|+..|++. .|.|+.|.|.+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v~~ 82 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQ-YLCNRPITVSY 82 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTC-EETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCC-EECCEEEEEEE
Confidence 34899999999999999999999999999999 99999889999999999999999999999999996 79999999999
Q ss_pred ecCCC
Q 006380 455 VTDHV 459 (647)
Q Consensus 455 ~~~~~ 459 (647)
+.+..
T Consensus 83 a~~~~ 87 (96)
T 1x5t_A 83 AFKKD 87 (96)
T ss_dssp SCCCC
T ss_pred ecccC
Confidence 98654
No 85
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.4e-14 Score=122.33 Aligned_cols=85 Identities=26% Similarity=0.405 Sum_probs=78.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEE
Q 006380 373 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 452 (647)
Q Consensus 373 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v 452 (647)
...+.++|||+|||..+++++|+++|+.||.|..|.|+.+. ++.++|||||+|.+.++|.+||..|++. .|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v 88 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQ-LLFDRPMHV 88 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCC-EeCCCEEEE
Confidence 33456899999999999999999999999999999999987 7999999999999999999999999996 799999999
Q ss_pred EeecCCC
Q 006380 453 SSVTDHV 459 (647)
Q Consensus 453 ~~~~~~~ 459 (647)
.++....
T Consensus 89 ~~a~~~~ 95 (114)
T 2do0_A 89 KMDERAL 95 (114)
T ss_dssp EECSCCC
T ss_pred EEcccCC
Confidence 9987543
No 86
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.59 E-value=1.1e-14 Score=122.00 Aligned_cols=83 Identities=28% Similarity=0.478 Sum_probs=76.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEE
Q 006380 374 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 453 (647)
Q Consensus 374 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~ 453 (647)
..+.++|||+|||+.+++++|+++|+.|| |..|.|+.+..++.++|||||+|.+.++|.+|| .|++. .|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~-~~~g~~l~V~ 88 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGA-LLGDRSLRVD 88 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTC-EETTEECEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCC-eECCeEEEEE
Confidence 34468999999999999999999999997 999999999889999999999999999999999 89995 7999999999
Q ss_pred eecCCC
Q 006380 454 SVTDHV 459 (647)
Q Consensus 454 ~~~~~~ 459 (647)
++.+..
T Consensus 89 ~a~~~~ 94 (103)
T 2dng_A 89 IAEGRK 94 (103)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 998644
No 87
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=4.9e-15 Score=122.92 Aligned_cols=84 Identities=26% Similarity=0.446 Sum_probs=76.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCC---CCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEE
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIE---TGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 452 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~---~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v 452 (647)
+.++|||+|||+.+++++|+++|+.||.|..|.|+.+.. ++.++|||||+|.+.++|.+||..|++. .|.|+.|.|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V 82 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGH-TVDGHKLEV 82 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTC-EETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCC-eeCCeEEEE
Confidence 358999999999999999999999999999999998775 5689999999999999999999999996 799999999
Q ss_pred EeecCCCC
Q 006380 453 SSVTDHVG 460 (647)
Q Consensus 453 ~~~~~~~~ 460 (647)
.++.+...
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99986543
No 88
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=8.5e-15 Score=122.88 Aligned_cols=83 Identities=23% Similarity=0.506 Sum_probs=77.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCC-CCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEE
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIET-GQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 453 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~-~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~ 453 (647)
.+.++|||+|||+.+++++|+++|+.|| |..|.|+.+..+ +.++|||||+|.+.++|.+|| .|++. .|.|+.|.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~-~~~g~~l~V~ 89 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEE-SLGNKRIRVD 89 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTC-EETTEECEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCC-EeCCcEEEEE
Confidence 4468999999999999999999999999 999999999877 999999999999999999999 99995 7999999999
Q ss_pred eecCCCC
Q 006380 454 SVTDHVG 460 (647)
Q Consensus 454 ~~~~~~~ 460 (647)
++.+...
T Consensus 90 ~a~~~~~ 96 (104)
T 1wi8_A 90 VADQAQD 96 (104)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9986543
No 89
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.59 E-value=6.6e-15 Score=125.00 Aligned_cols=83 Identities=31% Similarity=0.514 Sum_probs=78.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEe
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 454 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~ 454 (647)
...++|||+|||..+++++|+++|+.||.|..|.|+.+..+|.++|||||+|.+.++|.+|+..|+|. .|.|+.|.|.|
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V~~ 102 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGA-EIMGQTIQVDW 102 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCC-EECCcEEEEEE
Confidence 34589999999999999999999999999999999999889999999999999999999999999995 79999999999
Q ss_pred ecCC
Q 006380 455 VTDH 458 (647)
Q Consensus 455 ~~~~ 458 (647)
+.+.
T Consensus 103 a~~~ 106 (110)
T 1oo0_B 103 CFVK 106 (110)
T ss_dssp SEES
T ss_pred cccC
Confidence 9754
No 90
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.59 E-value=5.8e-15 Score=124.44 Aligned_cols=85 Identities=31% Similarity=0.465 Sum_probs=78.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeee---CCeEE
Q 006380 374 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEI---VGRTL 450 (647)
Q Consensus 374 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~---~g~~l 450 (647)
....++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|++. .+ .|+.|
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~-~~~~~~g~~l 88 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQ-KTLPGMNRPI 88 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTT-CCCTTCSSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCC-cccCCCCceE
Confidence 344689999999999999999999999999999999999888999999999999999999999999996 56 88999
Q ss_pred EEEeecCCC
Q 006380 451 KVSSVTDHV 459 (647)
Q Consensus 451 ~v~~~~~~~ 459 (647)
.|.++.+..
T Consensus 89 ~v~~a~~~~ 97 (106)
T 2dgp_A 89 QVKPADSES 97 (106)
T ss_dssp EEEECCCCS
T ss_pred EEEECCccc
Confidence 999998644
No 91
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.6e-14 Score=123.86 Aligned_cols=86 Identities=33% Similarity=0.461 Sum_probs=78.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEE
Q 006380 372 PYGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLK 451 (647)
Q Consensus 372 ~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~ 451 (647)
......++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..|++ .|.|+.|.
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~--~~~g~~l~ 89 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP--IIDGRKAN 89 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC--EETTEECE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC--cCCCEEEE
Confidence 3444569999999999999999999999999999999999988999999999999999999999999997 49999999
Q ss_pred EEeecCCC
Q 006380 452 VSSVTDHV 459 (647)
Q Consensus 452 v~~~~~~~ 459 (647)
|.++....
T Consensus 90 V~~a~~~~ 97 (116)
T 2cqd_A 90 VNLAYLGA 97 (116)
T ss_dssp EEESTTTC
T ss_pred EEEcccCC
Confidence 99997543
No 92
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=5e-15 Score=123.10 Aligned_cols=82 Identities=29% Similarity=0.456 Sum_probs=77.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccCCCee-EEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeE----E
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEPFGPVE-LVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRT----L 450 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~----l 450 (647)
+.++|||+|||+.+++++|+++|+.||.|. .|.|+.++.++.++|||||+|.+.++|.+|+..|+|. .|.|+. |
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~~~~~l 86 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGK-PLPGATPAKRF 86 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTS-EESSCSSCEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCC-ccCCCCcceeE
Confidence 458999999999999999999999999999 9999999889999999999999999999999999996 799999 9
Q ss_pred EEEeecCC
Q 006380 451 KVSSVTDH 458 (647)
Q Consensus 451 ~v~~~~~~ 458 (647)
.|.|+.+.
T Consensus 87 ~v~~a~~~ 94 (99)
T 2div_A 87 KLNYATYS 94 (99)
T ss_dssp CEEETTCC
T ss_pred EEeecCCC
Confidence 99998753
No 93
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=4.8e-15 Score=122.98 Aligned_cols=83 Identities=20% Similarity=0.188 Sum_probs=76.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEE
Q 006380 374 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 453 (647)
Q Consensus 374 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~ 453 (647)
.+...+|||+|||+.+++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|.+||..|++. .|.|+.|.|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~-~~~g~~l~V~ 90 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDR-PIGSRKVKLV 90 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTC-EETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCC-eeCCeEEEEE
Confidence 344589999999999999999999999999988888888789999999999999999999999999996 7999999999
Q ss_pred eecC
Q 006380 454 SVTD 457 (647)
Q Consensus 454 ~~~~ 457 (647)
++..
T Consensus 91 ~a~~ 94 (98)
T 2cqp_A 91 LGSG 94 (98)
T ss_dssp ESSC
T ss_pred EcCC
Confidence 9874
No 94
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.59 E-value=9.2e-15 Score=123.43 Aligned_cols=80 Identities=29% Similarity=0.487 Sum_probs=76.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEe
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 454 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~ 454 (647)
.+.++|||+|||+.+++++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..|++. .|.|+.|.|.+
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~~ 104 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGV-PLDGRPMNIQL 104 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCC-EeCCcEEEEEE
Confidence 446899999999999999999999999999999999998 9999999999999999999999999996 79999999999
Q ss_pred ec
Q 006380 455 VT 456 (647)
Q Consensus 455 ~~ 456 (647)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 95
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.59 E-value=6.4e-15 Score=121.45 Aligned_cols=81 Identities=37% Similarity=0.547 Sum_probs=75.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEE
Q 006380 374 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 453 (647)
Q Consensus 374 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~ 453 (647)
....++|||+|||+.+++++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..|++. .|.|+.|.|.
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~ 90 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGI-RLYGRPINVS 90 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTC-EETTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCC-EECCCEEEEE
Confidence 3446899999999999999999999999999999999987 5899999999999999999999999996 7999999999
Q ss_pred eec
Q 006380 454 SVT 456 (647)
Q Consensus 454 ~~~ 456 (647)
++.
T Consensus 91 ~a~ 93 (95)
T 2ywk_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred EcC
Confidence 986
No 96
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.9e-15 Score=123.62 Aligned_cols=79 Identities=19% Similarity=0.318 Sum_probs=71.4
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhc--CcccCC
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMH--MRWFAR 628 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~--g~~~~G 628 (647)
..+..+|||.|| |..++ +++|.++|++||.|+.|.|..+ +|+|||+|.+.++|.+|++.|+ |..|.|
T Consensus 13 ~~~~~~LfV~nL--p~~vt--------e~dL~~lF~~fG~V~~v~i~~~-kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G 81 (105)
T 1sjq_A 13 GVPSRVIHIRKL--PIDVT--------EGEVISLGLPFGKVTNLLMLKG-KNQAFIEMNTEEAANTMVNYYTSVTPVLRG 81 (105)
T ss_dssp CCCCCEEEECSC--CTTSC--------HHHHHHHHHHHCCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTSCCEETT
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCEEEEEEEcC-CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 356789999999 98888 8999999999999999999864 8999999999999999999886 478999
Q ss_pred eEEEEEEcChhh
Q 006380 629 RLISAIFMKPED 640 (647)
Q Consensus 629 r~l~v~~~~~~~ 640 (647)
++|.|.|+.+..
T Consensus 82 r~l~V~~A~~~~ 93 (105)
T 1sjq_A 82 QPIYIQFSNHKE 93 (105)
T ss_dssp EECCBCCCSSSS
T ss_pred EEEEEEEcCCCC
Confidence 999999988764
No 97
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.58 E-value=5e-15 Score=129.10 Aligned_cols=84 Identities=31% Similarity=0.497 Sum_probs=78.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEE
Q 006380 374 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 453 (647)
Q Consensus 374 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~ 453 (647)
..+.++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..|+|. .|.|+.|.|.
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~-~i~g~~l~V~ 121 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM-ELDGRRIRVD 121 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTC-CSSSSCCEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC-EECCEEEEEE
Confidence 345689999999999999999999999999999999999889999999999999999999999999995 7999999999
Q ss_pred eecCC
Q 006380 454 SVTDH 458 (647)
Q Consensus 454 ~~~~~ 458 (647)
|+.++
T Consensus 122 ~a~~~ 126 (129)
T 2kxn_B 122 FSITK 126 (129)
T ss_dssp CCSSS
T ss_pred EecCC
Confidence 98754
No 98
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.58 E-value=8.9e-15 Score=118.38 Aligned_cols=79 Identities=24% Similarity=0.511 Sum_probs=73.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEe
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 454 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~ 454 (647)
...++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+ .+++. .|+|+.|.|.+
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~~~~~-~~~g~~i~v~~ 86 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL-DQKEH-RLDGRVIDPKK 86 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHH-HSSCE-EETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHH-HhCCC-EECCEEEEEEe
Confidence 34589999999999999999999999999999999999889999999999999999999999 55774 69999999987
Q ss_pred e
Q 006380 455 V 455 (647)
Q Consensus 455 ~ 455 (647)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 99
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.58 E-value=8.1e-15 Score=134.13 Aligned_cols=136 Identities=24% Similarity=0.282 Sum_probs=79.1
Q ss_pred EEecCCcCHHHHH-HhcCcccc--CccccCCCChhhhh--hhccc--ccCCCCCCCCCCCCCceEEEcCCCCCCCHHHHH
Q 006380 323 IEFYDVMSVPMAI-ALSGQLLL--GQPVMVKPSEAEKN--LVQSN--TSAGGTATGPYGAIDRKLYVGNLHFNMTETQLR 395 (647)
Q Consensus 323 v~f~~~~~a~~al-~l~g~~~~--g~~l~v~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~ 395 (647)
.+|...++|..++ .+++.... |............. ..... ...............++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6888888888887 46665443 44444433211110 00000 000011112223346899999999999999999
Q ss_pred HhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecCCC
Q 006380 396 KLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTDHV 459 (647)
Q Consensus 396 ~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~~~ 459 (647)
++|+.||.|..|.|+.+..+|.++|||||+|.+.++|.+||..|+|. .|.|+.|.|.|+.+..
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V~~a~~~~ 153 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGA-EIMGQTIQVDWCFVKG 153 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEESEECC
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCC-EECCEEEEEEEecCCC
Confidence 99999999999999999889999999999999999999999999995 7999999999998543
No 100
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.9e-14 Score=119.42 Aligned_cols=84 Identities=31% Similarity=0.566 Sum_probs=76.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEE
Q 006380 374 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 453 (647)
Q Consensus 374 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~ 453 (647)
....++|||+|||+.+++++|+++|+.||.|..|.|+.+.. .++|||||+|.+.++|.+||..|++. .|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~ 88 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGT-VVEGRKIEVN 88 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTC-EETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCC-EECCEEEEEE
Confidence 34569999999999999999999999999999999998853 38999999999999999999999995 7999999999
Q ss_pred eecCCCC
Q 006380 454 SVTDHVG 460 (647)
Q Consensus 454 ~~~~~~~ 460 (647)
++.+...
T Consensus 89 ~a~~~~~ 95 (103)
T 2cq3_A 89 NATARVM 95 (103)
T ss_dssp ECCSSCC
T ss_pred EcccCCC
Confidence 9986543
No 101
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4.8e-15 Score=122.32 Aligned_cols=78 Identities=18% Similarity=0.227 Sum_probs=70.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCC-eeeCCeEEEEEe
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK-LEIVGRTLKVSS 454 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~-~~~~g~~l~v~~ 454 (647)
+..+|||+|||+.+++++|+++|++||.|..|.|+++ +|||||+|.+.++|..|+..|++. ..|.|++|.|.|
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 4589999999999999999999999999999999875 799999999999999999988742 479999999999
Q ss_pred ecCCC
Q 006380 455 VTDHV 459 (647)
Q Consensus 455 ~~~~~ 459 (647)
+....
T Consensus 89 A~~~~ 93 (105)
T 1sjq_A 89 SNHKE 93 (105)
T ss_dssp CSSSS
T ss_pred cCCCC
Confidence 98644
No 102
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.6e-14 Score=120.24 Aligned_cols=81 Identities=20% Similarity=0.206 Sum_probs=72.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCC-eeeCCeEEE
Q 006380 373 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK-LEIVGRTLK 451 (647)
Q Consensus 373 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~-~~~~g~~l~ 451 (647)
..+++++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|+..|++. +.|.|++|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3455789999999999999999999999999999998764 799999999999999999988753 459999999
Q ss_pred EEeecCCC
Q 006380 452 VSSVTDHV 459 (647)
Q Consensus 452 v~~~~~~~ 459 (647)
|.|+....
T Consensus 85 V~~a~~~~ 92 (104)
T 1wex_A 85 FNYSTSKR 92 (104)
T ss_dssp EEECSSSS
T ss_pred EEEccCcc
Confidence 99998644
No 103
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.5e-14 Score=119.83 Aligned_cols=83 Identities=33% Similarity=0.522 Sum_probs=75.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEE
Q 006380 374 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 453 (647)
Q Consensus 374 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~ 453 (647)
....++|||+|||+.+++++|+++|+.||.|..|.|+.+. +.++|||||+|.+.++|.+||..|++. .|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~ 88 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAAALAAMNGR-KILGKEVKVN 88 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC--CSSCCEEEEEESSHHHHHHHHHHHTTE-EETTEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC--CCCCCEEEEEECCHHHHHHHHHHhCCC-CcCCCeEEEE
Confidence 3456999999999999999999999999999999999985 336899999999999999999999995 7999999999
Q ss_pred eecCCC
Q 006380 454 SVTDHV 459 (647)
Q Consensus 454 ~~~~~~ 459 (647)
|+.+..
T Consensus 89 ~a~~~~ 94 (103)
T 2cqi_A 89 WATTPS 94 (103)
T ss_dssp ECCCTT
T ss_pred ECCCCc
Confidence 998643
No 104
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=8.1e-15 Score=123.28 Aligned_cols=85 Identities=27% Similarity=0.404 Sum_probs=78.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEE
Q 006380 373 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 452 (647)
Q Consensus 373 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v 452 (647)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||.. ++ +.|.|+.|.|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~-~~~~g~~l~V 89 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RP-HTLDGRNIDP 89 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CS-EEETTEEEBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CC-CeECCEEEEE
Confidence 344569999999999999999999999999999999999988999999999999999999999977 88 5899999999
Q ss_pred EeecCCC
Q 006380 453 SSVTDHV 459 (647)
Q Consensus 453 ~~~~~~~ 459 (647)
.++.+..
T Consensus 90 ~~a~~~~ 96 (105)
T 2dh8_A 90 KPCTPRG 96 (105)
T ss_dssp CCSCCSS
T ss_pred EEccCCC
Confidence 9998654
No 105
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.5e-14 Score=123.41 Aligned_cols=85 Identities=32% Similarity=0.431 Sum_probs=78.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccCCCee--------EEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeC
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVE--------LVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIV 446 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~ 446 (647)
...++|||+|||+.+++++|+++|+.||.|. .|.|+.++.++.++|||||+|.+.++|.+||..|++. .|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~ 91 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK-DFQ 91 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC-EET
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC-ccC
Confidence 3468999999999999999999999999999 6999999889999999999999999999999999996 799
Q ss_pred CeEEEEEeecCCCC
Q 006380 447 GRTLKVSSVTDHVG 460 (647)
Q Consensus 447 g~~l~v~~~~~~~~ 460 (647)
|+.|.|.++.+...
T Consensus 92 g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 92 GSKLKVSLARKKPP 105 (113)
T ss_dssp TEECEEECSSCCCC
T ss_pred CCEEEEEECCCCCC
Confidence 99999999986543
No 106
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.57 E-value=9e-15 Score=118.66 Aligned_cols=81 Identities=22% Similarity=0.545 Sum_probs=75.1
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCC-eeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEee
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQ-CKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 455 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~-~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~ 455 (647)
.++|||+|||..+++++|+++|++||.|..|.|+.+..++. ++|||||+|.+.++|.+|+..|+|. .|.|+.|.|.++
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~a 82 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGG-QIDGQEITATAV 82 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCC-eECCeEEEEEEC
Confidence 38999999999999999999999999999999998876665 8999999999999999999999996 799999999999
Q ss_pred cCC
Q 006380 456 TDH 458 (647)
Q Consensus 456 ~~~ 458 (647)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 107
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.57 E-value=3.6e-15 Score=122.98 Aligned_cols=81 Identities=22% Similarity=0.228 Sum_probs=74.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEe
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 454 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~ 454 (647)
+...+|||+|||+.+++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|.+||..|++. .|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~-~~~gr~l~v~~ 91 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDR-PIGSRKVKLSG 91 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCC-eECCcEEEEEe
Confidence 34589999999999999999999999999998888888889999999999999999999999999996 79999999998
Q ss_pred ec
Q 006380 455 VT 456 (647)
Q Consensus 455 ~~ 456 (647)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 76
No 108
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.1e-14 Score=120.30 Aligned_cols=79 Identities=20% Similarity=0.235 Sum_probs=71.2
Q ss_pred CCCceEEEcCCCC-CCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCC-eeeCCeEEEE
Q 006380 375 AIDRKLYVGNLHF-NMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK-LEIVGRTLKV 452 (647)
Q Consensus 375 ~~~~~l~v~nLp~-~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~-~~~~g~~l~v 452 (647)
.+.++|||+|||+ .+++++|+++|++||.|..|.|+++ +|||||+|.+.++|..|+..|++. +.|.|++|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3468999999999 9999999999999999999999875 589999999999999999999863 4599999999
Q ss_pred EeecCCC
Q 006380 453 SSVTDHV 459 (647)
Q Consensus 453 ~~~~~~~ 459 (647)
.|+....
T Consensus 87 ~~a~~~~ 93 (102)
T 1x4d_A 87 HLSQKYK 93 (102)
T ss_dssp EEECCCT
T ss_pred EECCCCC
Confidence 9998543
No 109
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.57 E-value=8.5e-15 Score=126.04 Aligned_cols=82 Identities=33% Similarity=0.477 Sum_probs=76.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEE
Q 006380 374 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 453 (647)
Q Consensus 374 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~ 453 (647)
.+..++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|+|. .|.|+.|.|.
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~V~ 115 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGF-QVGTKRLKVQ 115 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCC-EETTEECCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCC-EECCEEEEEE
Confidence 345689999999999999999999999999999999999889999999999999999999999999995 7999999999
Q ss_pred eec
Q 006380 454 SVT 456 (647)
Q Consensus 454 ~~~ 456 (647)
|++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 873
No 110
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.57 E-value=1.3e-14 Score=118.75 Aligned_cols=82 Identities=28% Similarity=0.461 Sum_probs=75.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEe
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 454 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~ 454 (647)
...++|||+|||..+++++|+++|+.||.|..|.|+.+ ++.++|||||+|.+.++|.+|+..|++. .|.|+.|.|.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~-~~~g~~l~v~~ 82 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGM-KLSGREIDVRI 82 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTC-CBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCC-EECCcEEEEEE
Confidence 34589999999999999999999999999999999885 8899999999999999999999999995 79999999999
Q ss_pred ecCCC
Q 006380 455 VTDHV 459 (647)
Q Consensus 455 ~~~~~ 459 (647)
+.+..
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 98543
No 111
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.1e-14 Score=120.43 Aligned_cols=81 Identities=20% Similarity=0.317 Sum_probs=72.5
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhc--CcccCC
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMH--MRWFAR 628 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~--g~~~~G 628 (647)
.+++++|||.|| |..++ +++|.++|++||.|..|.|..+ +|+|||+|.+.++|.+|++.|+ +..|.|
T Consensus 12 ~~p~~~l~V~nL--p~~~t--------e~~L~~~F~~fG~v~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G 80 (101)
T 2cq1_A 12 GAPSRVLHIRKL--PGEVT--------ETEVIALGLPFGKVTNILMLKG-KNQAFLELATEEAAITMVNYYSAVTPHLRN 80 (101)
T ss_dssp SSCCSEEEEESC--CTTCC--------HHHHHHTTTTTSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHHHSCCEETT
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCEEEEEEECC-CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 467789999999 88887 8999999999999999998864 8999999999999999999875 678999
Q ss_pred eEEEEEEcChhhhh
Q 006380 629 RLISAIFMKPEDYE 642 (647)
Q Consensus 629 r~l~v~~~~~~~~~ 642 (647)
++|.|.|+.+....
T Consensus 81 r~l~V~~a~~~~~~ 94 (101)
T 2cq1_A 81 QPIYIQYSNHKELK 94 (101)
T ss_dssp EECEEEECSCSSCC
T ss_pred cEEEEEEcCcccCc
Confidence 99999999876543
No 112
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.57 E-value=2.4e-14 Score=122.38 Aligned_cols=82 Identities=32% Similarity=0.541 Sum_probs=77.2
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
.++|||+|||..+++++|+++|+.||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..|+|. .|.|+.|.|.++.
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~-~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 7 PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGK-SLHGKAIKVEQAK 84 (116)
T ss_dssp CCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSC-BCSSSBCEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCC-EECCEEEEEEECC
Confidence 4899999999999999999999999999999999998 9999999999999999999999999996 7999999999998
Q ss_pred CCCC
Q 006380 457 DHVG 460 (647)
Q Consensus 457 ~~~~ 460 (647)
+...
T Consensus 85 ~~~~ 88 (116)
T 2fy1_A 85 KPSF 88 (116)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 6543
No 113
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.56 E-value=9.5e-15 Score=114.54 Aligned_cols=73 Identities=26% Similarity=0.324 Sum_probs=68.7
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
+.-|||+||++.+++++|+++|.+||+|..+.+.. ++|||||+|.+.++|.+|++.||+ ..++|++|.|.+|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~-~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNN-CVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTT-EEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcC-CEECCcEEEEEECC
Confidence 47899999999999999999999999999999865 489999999999999999999999 58999999999985
No 114
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=2.8e-14 Score=116.47 Aligned_cols=79 Identities=22% Similarity=0.325 Sum_probs=74.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEee
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 455 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~ 455 (647)
...+|||+|||+.+++++|+++|+.| .|..|.|+.+ .+|.++|||||+|.+.++|.+||. |++. .|.|+.|.|.++
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~-~~~gr~i~v~~a 84 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNRE-YMGGRYIEVFRE 84 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSE-EETTEEEEEEEE
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCc-eeCCcEEEEEEC
Confidence 45899999999999999999999999 8999999998 599999999999999999999998 9995 799999999999
Q ss_pred cCC
Q 006380 456 TDH 458 (647)
Q Consensus 456 ~~~ 458 (647)
.+.
T Consensus 85 ~~~ 87 (91)
T 2dgw_A 85 KSG 87 (91)
T ss_dssp SSC
T ss_pred CcC
Confidence 854
No 115
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.56 E-value=1.1e-14 Score=126.97 Aligned_cols=84 Identities=27% Similarity=0.478 Sum_probs=78.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEe
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 454 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~ 454 (647)
...++|||+|||+.+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||+.|++. .|.|+.|.|.|
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~ 98 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQ-DLMGQPISVDW 98 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTC-BSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC-eeCCeEEEEEE
Confidence 34589999999999999999999999999999999999889999999999999999999999999995 79999999999
Q ss_pred ecCCC
Q 006380 455 VTDHV 459 (647)
Q Consensus 455 ~~~~~ 459 (647)
+.+..
T Consensus 99 a~~~~ 103 (126)
T 3ex7_B 99 CFVRG 103 (126)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98644
No 116
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.3e-14 Score=120.80 Aligned_cols=80 Identities=13% Similarity=0.116 Sum_probs=72.0
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCc--ccCC
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMR--WFAR 628 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~--~~~G 628 (647)
.+|+++|||.|| |..++ +++|.++|++||.|..|.|.+ .+|+|||+|.+.++|.+|++.|+|. .|.|
T Consensus 12 ~~p~~~l~V~nL--p~~~t--------e~~L~~~F~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G 80 (104)
T 1wex_A 12 VSVSPVVHVRGL--CESVV--------EADLVEALEKFGTICYVMMMP-FKRQALVEFENIDSAKECVTFAADVPVYIAG 80 (104)
T ss_dssp CCCCSEEEEESC--CSSCC--------HHHHHHHHTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCBSSS
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHhCCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 467789999999 98887 899999999999999999875 5899999999999999999999875 4999
Q ss_pred eEEEEEEcChhhh
Q 006380 629 RLISAIFMKPEDY 641 (647)
Q Consensus 629 r~l~v~~~~~~~~ 641 (647)
++|.|.|+.+...
T Consensus 81 r~l~V~~a~~~~~ 93 (104)
T 1wex_A 81 QQAFFNYSTSKRI 93 (104)
T ss_dssp SBCEEEECSSSSC
T ss_pred EEEEEEEccCccc
Confidence 9999999987654
No 117
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.56 E-value=1.1e-14 Score=122.89 Aligned_cols=79 Identities=18% Similarity=0.277 Sum_probs=71.8
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCHHHHHHHHHHhcCccc
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAMHMRWF 626 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~~~A~~A~~~l~g~~~ 626 (647)
++.++|||.|| |..++ +++|.++|++||.|..|.|+.+ ++|+|||+|.+.++|.+|++.|||..|
T Consensus 4 ~p~~~lfV~nL--~~~~t--------e~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~ 73 (110)
T 3s8s_A 4 IPLKEVTFARL--NDNVR--------ETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSV 73 (110)
T ss_dssp SCCCEEEEESC--CTTCC--------HHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECC--CCCCC--------HHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEE
Confidence 56678999999 88887 8999999999999999998644 479999999999999999999999999
Q ss_pred CCeEEEEEEcChhh
Q 006380 627 ARRLISAIFMKPED 640 (647)
Q Consensus 627 ~Gr~l~v~~~~~~~ 640 (647)
.|+.|+|.++....
T Consensus 74 ~gr~i~V~~a~~~~ 87 (110)
T 3s8s_A 74 MGNIIHAQLDIKGQ 87 (110)
T ss_dssp TTEECEEEECSTTH
T ss_pred CCeEEEEEECCCCc
Confidence 99999999987654
No 118
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.4e-14 Score=118.46 Aligned_cols=79 Identities=23% Similarity=0.239 Sum_probs=70.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHc--CCeeeCCeEEE
Q 006380 374 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALN--GKLEIVGRTLK 451 (647)
Q Consensus 374 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~--g~~~~~g~~l~ 451 (647)
.+++++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|..|+..|+ + +.|.|++|.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~-~~~~Gr~l~ 84 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVT-PHLRNQPIY 84 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSC-CEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCC-ceECCcEEE
Confidence 345689999999999999999999999999999998765 7999999999999999999875 4 479999999
Q ss_pred EEeecCCC
Q 006380 452 VSSVTDHV 459 (647)
Q Consensus 452 v~~~~~~~ 459 (647)
|.|+....
T Consensus 85 V~~a~~~~ 92 (101)
T 2cq1_A 85 IQYSNHKE 92 (101)
T ss_dssp EEECSCSS
T ss_pred EEEcCccc
Confidence 99998543
No 119
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.3e-15 Score=123.25 Aligned_cols=78 Identities=23% Similarity=0.305 Sum_probs=73.3
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
.++|||+|||+.+++++|.++|++||.|..|.|+.+.. +.++|||||+|.+.++|.+||. +++. .|+|+.|.|.++.
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~-~~~gr~l~V~~~~ 87 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQ-KYKETDLLILFKD 87 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCC-CCTTTTCEEEEHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCC-EECCEEEEEEEch
Confidence 48999999999999999999999999999999999985 9999999999999999999997 8885 7999999999876
Q ss_pred C
Q 006380 457 D 457 (647)
Q Consensus 457 ~ 457 (647)
+
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 120
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.5e-14 Score=122.68 Aligned_cols=81 Identities=17% Similarity=0.201 Sum_probs=72.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCC-eeeCCeEEEEE
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK-LEIVGRTLKVS 453 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~-~~~~g~~l~v~ 453 (647)
+++++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|++.|++. +.|.|++|.|.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 44689999999999999999999999999999999875 799999999999999999988742 46999999999
Q ss_pred eecCCCCC
Q 006380 454 SVTDHVGT 461 (647)
Q Consensus 454 ~~~~~~~~ 461 (647)
|+......
T Consensus 103 ~a~~k~~~ 110 (119)
T 2ad9_A 103 FSNHKELK 110 (119)
T ss_dssp ECSSSSCC
T ss_pred EccCCCCC
Confidence 99865433
No 121
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.55 E-value=1.2e-14 Score=118.13 Aligned_cols=78 Identities=31% Similarity=0.538 Sum_probs=74.9
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecC
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 457 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~ 457 (647)
++|||+|||+.+++++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|.+|+ .|++. .|.|+.|.|.++.+
T Consensus 7 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~-~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 7 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDES-LFRGRQIKVIPKRT 84 (89)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTC-EETTEECEEEETTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCC-EECCcEEEEEEccC
Confidence 79999999999999999999999999999999999889999999999999999999999 99996 79999999999874
No 122
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=5.3e-14 Score=117.77 Aligned_cols=85 Identities=32% Similarity=0.450 Sum_probs=76.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEE
Q 006380 374 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 453 (647)
Q Consensus 374 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~ 453 (647)
....++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||. ++ ..|.|+.|.|.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~-~~~~g~~l~v~ 88 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QR-HMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SC-EEETTEEEEEE
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cC-CeeCCeEEEEE
Confidence 3445899999999999999999999999999999999998889999999999999999999996 45 47999999999
Q ss_pred eecCCCCC
Q 006380 454 SVTDHVGT 461 (647)
Q Consensus 454 ~~~~~~~~ 461 (647)
++.+....
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqg_A 89 LPNSKQSQ 96 (103)
T ss_dssp CCCTTCCC
T ss_pred ecCCCCcC
Confidence 99875543
No 123
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.55 E-value=4.1e-14 Score=125.61 Aligned_cols=87 Identities=37% Similarity=0.586 Sum_probs=80.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEE
Q 006380 374 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 453 (647)
Q Consensus 374 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~ 453 (647)
....++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..|++ ..|.|+.|.|.
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~ 117 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNG-FNILNKRLKVA 117 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTT-EECSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCC-CEECCeEEEEE
Confidence 34468999999999999999999999999999999999988899999999999999999999999999 47999999999
Q ss_pred eecCCCCC
Q 006380 454 SVTDHVGT 461 (647)
Q Consensus 454 ~~~~~~~~ 461 (647)
++.+....
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99865443
No 124
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.4e-14 Score=118.12 Aligned_cols=79 Identities=23% Similarity=0.320 Sum_probs=73.1
Q ss_pred CceEEEcCCCCCCCHHHHH----HhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEE
Q 006380 377 DRKLYVGNLHFNMTETQLR----KLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 452 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~----~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v 452 (647)
..+|||+|||+.+++++|+ ++|++||.|..|.|+.+..+ +|||||+|.+.++|.+|+..|||. .|.|+.|.|
T Consensus 9 ~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~-~~~gr~l~V 84 (96)
T 2dgx_A 9 GADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRY-KIGSKKILV 84 (96)
T ss_dssp CEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTE-EETTEEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCC-EECCeEEEE
Confidence 4899999999999999999 99999999999999988744 889999999999999999999995 899999999
Q ss_pred EeecCCC
Q 006380 453 SSVTDHV 459 (647)
Q Consensus 453 ~~~~~~~ 459 (647)
.++.+..
T Consensus 85 ~~a~~~~ 91 (96)
T 2dgx_A 85 SLATGAS 91 (96)
T ss_dssp EECCCSS
T ss_pred EEcCCCC
Confidence 9997543
No 125
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=8.9e-15 Score=124.02 Aligned_cols=81 Identities=19% Similarity=0.312 Sum_probs=72.8
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcC--cccCC
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHM--RWFAR 628 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g--~~~~G 628 (647)
.+++++|||.|| |..++ +++|.++|++||.|+.|.|..+ +|+|||+|.+.++|.+|++.|++ ..|.|
T Consensus 28 ~~ps~~LfVgNL--p~~vt--------e~dL~~lF~~fG~V~~v~i~~~-kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G 96 (119)
T 2ad9_A 28 GVPSRVIHIRKL--PIDVT--------EGEVISLGLPFGKVTNLLMLKG-KNQAFIEMNTEEAANTMVNYYTSVTPVLRG 96 (119)
T ss_dssp SSCCSEEEEESC--CTTCC--------HHHHHHHHTTTSCCCEEEEEGG-GTEEEEECSCHHHHHHHHHHHHHHCCCBTT
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 466789999999 88887 8999999999999999999864 89999999999999999999985 68999
Q ss_pred eEEEEEEcChhhhh
Q 006380 629 RLISAIFMKPEDYE 642 (647)
Q Consensus 629 r~l~v~~~~~~~~~ 642 (647)
++|.|.|+.+....
T Consensus 97 r~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 97 QPIYIQFSNHKELK 110 (119)
T ss_dssp BCCEEEECSSSSCC
T ss_pred eEEEEEEccCCCCC
Confidence 99999999876643
No 126
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=2.1e-14 Score=121.83 Aligned_cols=83 Identities=22% Similarity=0.273 Sum_probs=75.4
Q ss_pred CCceEEEcCCCCCCCHHHHH---HhhccCCCeeEEEeccCCCCC---CeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeE
Q 006380 376 IDRKLYVGNLHFNMTETQLR---KLFEPFGPVELVQLPLDIETG---QCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRT 449 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~---~~f~~~g~i~~v~i~~~~~~~---~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~ 449 (647)
...+|||+|||+.+++++|+ ++|++||.|..|.|+.+..++ .++|||||+|.+.++|.+||..||+. .|+|++
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~-~~~gr~ 92 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNV-VVDGRT 92 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTE-EETTEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCC-EECCEE
Confidence 35899999999999999999 999999999999999887644 45699999999999999999999995 799999
Q ss_pred EEEEeecCCC
Q 006380 450 LKVSSVTDHV 459 (647)
Q Consensus 450 l~v~~~~~~~ 459 (647)
|.|.++.++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998654
No 127
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=4.3e-15 Score=119.66 Aligned_cols=80 Identities=31% Similarity=0.500 Sum_probs=74.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEee
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 455 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~ 455 (647)
+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||. .|.|+.|++.++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~~~~~~~ 82 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKAS-GVQAQMAKQSGP 82 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHH-TCCEESCCSSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCC-eEeeEEEeecCC
Confidence 3489999999999999999999999999999999999889999999999999999999999999995 799999988765
Q ss_pred c
Q 006380 456 T 456 (647)
Q Consensus 456 ~ 456 (647)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 128
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.55 E-value=1e-14 Score=121.67 Aligned_cols=84 Identities=29% Similarity=0.446 Sum_probs=70.2
Q ss_pred CceEEecCcC-CCCCCCC--c------------hhhhhhHHHHHHHh-hccCCeEEEEEecC----CCceEEEEeCCHHH
Q 006380 554 SECLLLKNMF-DPAMETD--P------------DFDLEIQGDVEEEC-SKYGRVKHIYVDKR----SAGFVYLRFESTEA 613 (647)
Q Consensus 554 ~~~l~v~Nl~-~p~~~~d--~------------~~~~~i~edl~~~f-~~~G~v~~v~l~~~----~~g~afV~F~~~~~ 613 (647)
+++|+|.||+ +|...+. + ..+.+++++|+++| ++||.|..|.|+.+ ++|+|||+|.+.++
T Consensus 1 s~~~~l~nm~~~p~~~~~~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~ 80 (104)
T 1jmt_A 1 SQTIALLNIYRNPQNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREED 80 (104)
T ss_dssp CCEEEEEEEEECCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHH
T ss_pred CcEEEEeeccCCccccccccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHH
Confidence 4689999998 5765432 0 24556788999999 99999999999765 48999999999999
Q ss_pred HHHHHHHhcCcccCCeEEEEEEcC
Q 006380 614 AASAQRAMHMRWFARRLISAIFMK 637 (647)
Q Consensus 614 A~~A~~~l~g~~~~Gr~l~v~~~~ 637 (647)
|.+|+..|||+.|.|++|+|.|++
T Consensus 81 A~~A~~~lng~~~~Gr~i~v~~sp 104 (104)
T 1jmt_A 81 AEKAVIDLNNRWFNGQPIHAELSP 104 (104)
T ss_dssp HHHHHHHHTTCEETTEECCEEECC
T ss_pred HHHHHHHHCCCEECCEEEEEEEcC
Confidence 999999999999999999999975
No 129
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.55 E-value=7e-15 Score=128.95 Aligned_cols=86 Identities=21% Similarity=0.311 Sum_probs=78.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhccCCCeeE--EEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCC---eeeCC
Q 006380 373 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVEL--VQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK---LEIVG 447 (647)
Q Consensus 373 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~--v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~---~~~~g 447 (647)
.....++|||+|||+.+++++|+++|++||.|.. |.|+.++.+|.++|||||+|.+. +|.+|+..|+|. +.|.|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3345689999999999999999999999999977 99999999999999999999999 999999999994 26999
Q ss_pred eEEEEEeecCCC
Q 006380 448 RTLKVSSVTDHV 459 (647)
Q Consensus 448 ~~l~v~~~~~~~ 459 (647)
+.|.|.++.+..
T Consensus 98 r~l~V~~a~~~~ 109 (131)
T 2m2b_A 98 KTINVEFAKGSK 109 (131)
T ss_dssp CCCCCEECCCSC
T ss_pred EEEEEEECCCCC
Confidence 999999998643
No 130
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.55 E-value=1.7e-14 Score=129.95 Aligned_cols=80 Identities=25% Similarity=0.378 Sum_probs=76.0
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCC--CeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEe
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFG--PVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 454 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g--~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~ 454 (647)
.++|||+|||+.+++++|+++|+.|| .|..|.|+.+..+|.++|||||+|.+.++|.+||..|+|. .|.|+.|.|.+
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~-~~~Gr~l~V~~ 133 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGK-VLNGEKVDVRP 133 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTC-EETTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC-EECCeEeEEEE
Confidence 48999999999999999999999999 9999999999889999999999999999999999999995 79999999999
Q ss_pred ecC
Q 006380 455 VTD 457 (647)
Q Consensus 455 ~~~ 457 (647)
+.+
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 873
No 131
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.54 E-value=2.9e-14 Score=126.78 Aligned_cols=82 Identities=39% Similarity=0.651 Sum_probs=76.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEE
Q 006380 373 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 452 (647)
Q Consensus 373 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v 452 (647)
.....++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|+|. .|.|+.|.|
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v 137 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES-ELFGRTIRV 137 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEE-EETTEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC-EECCEEEEE
Confidence 3445699999999999999999999999999999999999889999999999999999999999999994 799999999
Q ss_pred Eee
Q 006380 453 SSV 455 (647)
Q Consensus 453 ~~~ 455 (647)
.+|
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 885
No 132
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.54 E-value=4.3e-15 Score=121.06 Aligned_cols=77 Identities=19% Similarity=0.370 Sum_probs=68.8
Q ss_pred CceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccC-CeEEEEEecC-----CCceEEEEeCCHHHHHHHHHHh-cCccc
Q 006380 554 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYG-RVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAM-HMRWF 626 (647)
Q Consensus 554 ~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G-~v~~v~l~~~-----~~g~afV~F~~~~~A~~A~~~l-~g~~~ 626 (647)
+++|+|+|| |..++ +++|.++|++|| .|..|.|+.+ ++|+|||+|.+.++|.+|++.| ++..|
T Consensus 1 S~~i~v~nL--p~~~t--------e~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~ 70 (91)
T 2lxi_A 1 SNIVMLRML--PQAAT--------EDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNI 70 (91)
T ss_dssp CCEEEEETC--CSSCC--------HHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEE
T ss_pred CCEEEEeCC--CCCCC--------HHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEE
Confidence 468999999 99988 899999999999 7999988643 5899999999999999999987 56789
Q ss_pred CCeEEEEEEcChhh
Q 006380 627 ARRLISAIFMKPED 640 (647)
Q Consensus 627 ~Gr~l~v~~~~~~~ 640 (647)
.|++|.|.|+.+..
T Consensus 71 ~gr~i~V~~a~~~~ 84 (91)
T 2lxi_A 71 LGQKVSMHYSDPKP 84 (91)
T ss_dssp TTEEEEEECCCSCC
T ss_pred CCEEEEEEEcCCCC
Confidence 99999999998753
No 133
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.2e-14 Score=122.08 Aligned_cols=80 Identities=40% Similarity=0.709 Sum_probs=76.3
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
.++|||+|||+.+++++|+++|+.||.|..|.|+.+..+|.++|||||+|.+.++|.+|+..|+|. .|.|+.|.|.++.
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR-EFSGRALRVDNAA 86 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSB-SCSSSCBEEEETT
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCC-eeCCcEEEEEeCC
Confidence 389999999999999999999999999999999999889999999999999999999999999995 7999999999987
Q ss_pred C
Q 006380 457 D 457 (647)
Q Consensus 457 ~ 457 (647)
+
T Consensus 87 ~ 87 (104)
T 1p1t_A 87 S 87 (104)
T ss_dssp C
T ss_pred C
Confidence 4
No 134
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.54 E-value=6.7e-15 Score=115.41 Aligned_cols=75 Identities=29% Similarity=0.519 Sum_probs=70.9
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEee
Q 006380 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 455 (647)
Q Consensus 379 ~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~ 455 (647)
+|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++ |++. .|.|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~-~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFH-EINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCC-CSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCC-EECCEEEEEEeC
Confidence 48999999999999999999999999999999998899999999999999999999996 9995 799999999875
No 135
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.7e-14 Score=121.13 Aligned_cols=82 Identities=24% Similarity=0.412 Sum_probs=77.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcc-CCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCee-eCCeEEEEE
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEP-FGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLE-IVGRTLKVS 453 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~-~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~-~~g~~l~v~ 453 (647)
+..+|||+|||+.+++++|+++|+. ||.|..|.|+.+. ++.++|||||+|.+.++|.+||..|++. . |.|+.|.|.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~~g~~l~v~ 85 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGA-VGLGSKPVRLS 85 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTC-CSSSSSCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCC-cccCCEeEEEE
Confidence 3589999999999999999999999 9999999999998 9999999999999999999999999995 7 999999999
Q ss_pred eecCCC
Q 006380 454 SVTDHV 459 (647)
Q Consensus 454 ~~~~~~ 459 (647)
++.+..
T Consensus 86 ~a~~~~ 91 (104)
T 2dhg_A 86 VAIPKA 91 (104)
T ss_dssp BCCCCC
T ss_pred EccCCC
Confidence 997644
No 136
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3.4e-14 Score=119.04 Aligned_cols=82 Identities=26% Similarity=0.337 Sum_probs=74.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccCCCeeE-EEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEE
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVEL-VQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 453 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~-v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~ 453 (647)
....+|||+|||+.+++++|+++|+.||.|.. |.|+.+ .++.++|||||+|.+.++|.+||.. ++. .|+|+.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~-~~~gr~i~v~ 89 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKE-RIGHRYIEIF 89 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTC-CSSSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-Ccc-hhCCcEEEEE
Confidence 34589999999999999999999999999987 889888 5999999999999999999999976 885 7999999999
Q ss_pred eecCCC
Q 006380 454 SVTDHV 459 (647)
Q Consensus 454 ~~~~~~ 459 (647)
++....
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 987543
No 137
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.2e-14 Score=120.04 Aligned_cols=78 Identities=6% Similarity=0.075 Sum_probs=70.0
Q ss_pred CCCCceEEecCcCCCC-CCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCc--ccC
Q 006380 551 GSPSECLLLKNMFDPA-METDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMR--WFA 627 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~-~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~--~~~ 627 (647)
..++++|||.|| |. .++ +++|.++|++||.|..|.|.. .+|+|||+|.+.++|..|++.|||. .|.
T Consensus 12 ~~p~~~l~V~nL--p~~~~t--------e~dL~~lF~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~ 80 (102)
T 1x4d_A 12 VETRRVVHIMDF--QRGKNL--------RYQLLQLVEPFGVISNHLILN-KINEAFIEMATTEDAQAAVDYYTTTPALVF 80 (102)
T ss_dssp CCCCCEEEEESC--CCSSSH--------HHHHHTTTGGGSCEEEEEECS-SSSCEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred CCCCCEEEEeCC--CCCcCC--------HHHHHHHHHhcCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHHcCCCceEC
Confidence 356789999999 88 777 799999999999999999985 4799999999999999999999975 499
Q ss_pred CeEEEEEEcChh
Q 006380 628 RRLISAIFMKPE 639 (647)
Q Consensus 628 Gr~l~v~~~~~~ 639 (647)
|++|.|.|+...
T Consensus 81 Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 81 GKPVRVHLSQKY 92 (102)
T ss_dssp TEECEEEEECCC
T ss_pred CcEEEEEECCCC
Confidence 999999998753
No 138
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.54 E-value=7.6e-15 Score=127.55 Aligned_cols=78 Identities=29% Similarity=0.534 Sum_probs=74.8
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecC
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 457 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~ 457 (647)
++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|| .|+|. .|.|+.|.|.++.+
T Consensus 37 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~-~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 37 RSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDET-VFRGRTIKVLPKRT 114 (124)
T ss_dssp TEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTC-EETTEECEEEESSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCC-eECCeEEEEEECCC
Confidence 79999999999999999999999999999999999889999999999999999999999 89995 79999999999874
No 139
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.9e-14 Score=118.71 Aligned_cols=81 Identities=22% Similarity=0.315 Sum_probs=73.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEe
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 454 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~ 454 (647)
....+|||+|||+.+++++|+++|+.||.+ .|.|+.++ ++.++|||||+|.+.++|.+|| .+++. .|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~-~~~gr~i~V~~ 88 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKA-NMQHRYVELFL 88 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSC-CSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCC-eECCcEEEEEE
Confidence 345899999999999999999999999955 99999998 9999999999999999999999 57885 79999999999
Q ss_pred ecCCC
Q 006380 455 VTDHV 459 (647)
Q Consensus 455 ~~~~~ 459 (647)
+....
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87543
No 140
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.54 E-value=7.2e-14 Score=121.26 Aligned_cols=83 Identities=25% Similarity=0.471 Sum_probs=77.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEe
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 454 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~ 454 (647)
...++|||+|||..+++++|+++|+.||.|..|.|+.+. +|.++|||||+|.+.++|.+|+..|+|. .|.|+.|.|.+
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V~~ 110 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGV-PLDGRPMDIQL 110 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTE-ESSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCC-EECCcEEEEEE
Confidence 446899999999999999999999999999999999998 9999999999999999999999999995 79999999999
Q ss_pred ecCCC
Q 006380 455 VTDHV 459 (647)
Q Consensus 455 ~~~~~ 459 (647)
+.+..
T Consensus 111 a~~~~ 115 (124)
T 2kt5_A 111 VASQI 115 (124)
T ss_dssp ECCTT
T ss_pred eCCCC
Confidence 98643
No 141
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3.1e-14 Score=120.62 Aligned_cols=85 Identities=16% Similarity=0.277 Sum_probs=77.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccCCC-eeEEEec-cCCCCCCeeeEEEEEeCCHHHHHHHHHHHc-CCeeeCCeEEEE
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEPFGP-VELVQLP-LDIETGQCKGFGFVQFAQLEHAKAAQSALN-GKLEIVGRTLKV 452 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~~g~-i~~v~i~-~~~~~~~~~g~afV~f~~~~~A~~Al~~l~-g~~~~~g~~l~v 452 (647)
..++|||+|||+.+++++|+++|+.||. |..|.|+ .+..++.++|||||+|.+.++|..|+..|+ |.+.|.|+.|.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 3589999999999999999999999998 9999998 788788999999999999999999999996 324799999999
Q ss_pred EeecCCCC
Q 006380 453 SSVTDHVG 460 (647)
Q Consensus 453 ~~~~~~~~ 460 (647)
.|+.+...
T Consensus 87 ~~a~~~~~ 94 (109)
T 2dis_A 87 DWAEPEID 94 (109)
T ss_dssp EESCSSCS
T ss_pred EEcCCCCC
Confidence 99987554
No 142
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.53 E-value=9.4e-15 Score=121.53 Aligned_cols=81 Identities=25% Similarity=0.534 Sum_probs=73.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCC-CCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEE
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDI-ETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 453 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~-~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~ 453 (647)
...++|||+|||..+++++|+++|+.|| |..|.|+.+. .+|.++|||||+|.+.++|.+|| .|+|. .|.|+.|.|.
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~-~~~g~~l~V~ 93 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEE-SLGNRRIRVD 93 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTC-CBTTBCCCCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCC-EECCeEEEEE
Confidence 3459999999999999999999999999 9999999987 58999999999999999999999 99995 7999999999
Q ss_pred eecCC
Q 006380 454 SVTDH 458 (647)
Q Consensus 454 ~~~~~ 458 (647)
++.+.
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 98753
No 143
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.4e-14 Score=122.17 Aligned_cols=80 Identities=23% Similarity=0.279 Sum_probs=74.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccCCCe-eEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEE
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPV-ELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 453 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i-~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~ 453 (647)
...++|||+|||+.+++++|+++|+.||.| ..|.|+.+. ++.++|||||+|.+.++|.+||.. ++ ..|.|+.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~-~~~~gr~i~v~ 89 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HR-KKLNGREAFVH 89 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CS-EEETTEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CC-CccCCeEEEEE
Confidence 345899999999999999999999999999 889999998 999999999999999999999965 88 57999999999
Q ss_pred eecC
Q 006380 454 SVTD 457 (647)
Q Consensus 454 ~~~~ 457 (647)
++..
T Consensus 90 ~a~~ 93 (114)
T 2cpy_A 90 VVTL 93 (114)
T ss_dssp EECH
T ss_pred ECCH
Confidence 9874
No 144
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3e-14 Score=120.47 Aligned_cols=82 Identities=30% Similarity=0.570 Sum_probs=74.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEE
Q 006380 374 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 453 (647)
Q Consensus 374 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~ 453 (647)
....++|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|+..|+|. .|.|+.|.|.
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V~ 102 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGT-VVEGRKIEVN 102 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTC-EETTEECEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCC-EECCEEEEEE
Confidence 3446899999999999999999999999999999999885 458999999999999999999999996 7999999999
Q ss_pred eecCC
Q 006380 454 SVTDH 458 (647)
Q Consensus 454 ~~~~~ 458 (647)
++.+.
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 98753
No 145
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=7.7e-14 Score=118.10 Aligned_cols=82 Identities=24% Similarity=0.391 Sum_probs=74.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEE
Q 006380 374 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 453 (647)
Q Consensus 374 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~ 453 (647)
....++|||+|||+.+++++|+++|+.||.|..|.|..+ +.++|||||+|.+.++|.+||+.|++. .|.|+.|.|.
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~V~ 94 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGY-DYDGYRLRVE 94 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTC-EETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCC-EECCeEEEEE
Confidence 344689999999999999999999999999999999654 457999999999999999999999995 7999999999
Q ss_pred eecCCC
Q 006380 454 SVTDHV 459 (647)
Q Consensus 454 ~~~~~~ 459 (647)
|+.+..
T Consensus 95 ~a~~~~ 100 (109)
T 1x4a_A 95 FPRSGR 100 (109)
T ss_dssp CCCCCC
T ss_pred EcccCC
Confidence 998644
No 146
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=9.1e-14 Score=118.70 Aligned_cols=82 Identities=28% Similarity=0.460 Sum_probs=75.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeee--------C
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEI--------V 446 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~--------~ 446 (647)
...++|||+|||+.+++++|+++|+.||.|..|.|+.+. ++.++|||||+|.+.++|.+||..|||. .| .
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~~~~~~~~~ 100 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGK-FIKTPPGVSAP 100 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTC-CCCCCTTSCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCC-EEcCCccccCC
Confidence 345899999999999999999999999999999999998 9999999999999999999999999996 67 5
Q ss_pred CeEEEEEeecCC
Q 006380 447 GRTLKVSSVTDH 458 (647)
Q Consensus 447 g~~l~v~~~~~~ 458 (647)
+++|.|.|+.+.
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999998753
No 147
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.3e-14 Score=122.47 Aligned_cols=79 Identities=22% Similarity=0.430 Sum_probs=75.3
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
.++|||+|||+.+++++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|.+|| .|++. .|.|+.|.|.++.
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~-~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQ-RLLGVPIIVQASQ 102 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTE-EETTEEEEEEEHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCC-EeCCeEEEEEecC
Confidence 479999999999999999999999999999999999988999999999999999999999 99995 7999999999987
Q ss_pred C
Q 006380 457 D 457 (647)
Q Consensus 457 ~ 457 (647)
+
T Consensus 103 ~ 103 (114)
T 2cq4_A 103 A 103 (114)
T ss_dssp H
T ss_pred C
Confidence 4
No 148
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1e-13 Score=115.50 Aligned_cols=81 Identities=30% Similarity=0.532 Sum_probs=72.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEE
Q 006380 374 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 453 (647)
Q Consensus 374 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~ 453 (647)
....++|||+|||+.+++++|+++|++||.| .++.+ .++.++|||||+|.+.++|.+||..|++ ..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~v~ 86 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNK-REIEGRAIRLE 86 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSS-EEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCC-CEeCCeEEEEE
Confidence 3456999999999999999999999999987 56666 4889999999999999999999999999 48999999999
Q ss_pred eecCCC
Q 006380 454 SVTDHV 459 (647)
Q Consensus 454 ~~~~~~ 459 (647)
++.+..
T Consensus 87 ~a~~~~ 92 (101)
T 2fc9_A 87 LQGPRG 92 (101)
T ss_dssp ECSSCC
T ss_pred EcCCCC
Confidence 998653
No 149
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.52 E-value=6.4e-14 Score=126.98 Aligned_cols=83 Identities=29% Similarity=0.423 Sum_probs=78.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEee
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 455 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~ 455 (647)
..++|||+|||+.+++++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|.+||..|++. .|.|+.|.|.|+
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V~~a 116 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGT-RLDDRIIRTDWD 116 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTS-EETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC-EECCeEEEEEEC
Confidence 3589999999999999999999999999999999999989999999999999999999999999995 799999999999
Q ss_pred cCCC
Q 006380 456 TDHV 459 (647)
Q Consensus 456 ~~~~ 459 (647)
.+..
T Consensus 117 ~~~~ 120 (156)
T 1h2v_Z 117 AGFK 120 (156)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8643
No 150
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.52 E-value=3.4e-14 Score=114.39 Aligned_cols=75 Identities=19% Similarity=0.275 Sum_probs=69.2
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCHHHHHHHHHHhcCccc
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAMHMRWF 626 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~~~A~~A~~~l~g~~~ 626 (647)
.+.++|+|.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+.++|.+|++.|||..|
T Consensus 5 ~~~~~l~V~nl--~~~~~--------~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 74 (85)
T 3mdf_A 5 TTKRVLYVGGL--AEEVD--------DKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL 74 (85)
T ss_dssp CCSSEEEEECC--CTTCC--------HHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEECC--CCCCC--------HHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEE
Confidence 56689999999 88887 7999999999999999998644 589999999999999999999999999
Q ss_pred CCeEEEEEEc
Q 006380 627 ARRLISAIFM 636 (647)
Q Consensus 627 ~Gr~l~v~~~ 636 (647)
.|+.|+|.|+
T Consensus 75 ~g~~l~v~~a 84 (85)
T 3mdf_A 75 FGRTIRVNLA 84 (85)
T ss_dssp TTEECEEEEC
T ss_pred CCcEEEEEEc
Confidence 9999999986
No 151
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.52 E-value=4.3e-14 Score=116.66 Aligned_cols=79 Identities=24% Similarity=0.420 Sum_probs=72.1
Q ss_pred CCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCHHHHHHHHHHhcCcccC
Q 006380 553 PSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAMHMRWFA 627 (647)
Q Consensus 553 ~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~~~A~~A~~~l~g~~~~ 627 (647)
|+++|+|.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+.++|.+|++.|||..|+
T Consensus 1 P~~~l~V~nL--p~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 70 (96)
T 2x1f_A 1 PSRVVYLGSI--PYDQT--------EEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLG 70 (96)
T ss_dssp CCSEEEEESC--CTTCC--------HHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECC--CCCCC--------HHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 4678999999 88887 7999999999999999999654 3899999999999999999999999999
Q ss_pred CeEEEEEEcChhhh
Q 006380 628 RRLISAIFMKPEDY 641 (647)
Q Consensus 628 Gr~l~v~~~~~~~~ 641 (647)
|+.|.|.|+.+...
T Consensus 71 g~~l~V~~a~~~~~ 84 (96)
T 2x1f_A 71 SRFLKCGYSSNSDI 84 (96)
T ss_dssp TEECEEEECSCSSG
T ss_pred CeEEEEEEcCCCCC
Confidence 99999999987653
No 152
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.52 E-value=3.5e-14 Score=119.18 Aligned_cols=80 Identities=29% Similarity=0.433 Sum_probs=73.4
Q ss_pred CCceEEEcCCCCCC------CHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCe-
Q 006380 376 IDRKLYVGNLHFNM------TETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGR- 448 (647)
Q Consensus 376 ~~~~l~v~nLp~~~------~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~- 448 (647)
..++|||+|||+.+ ++++|+++|++||.|..|.|+. .+|.++|||||+|.+.++|.+|+..|+|. .|.|+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~-~~~g~~ 90 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGY-KLDKQH 90 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSE-ECSTTC
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCc-ccCCCc
Confidence 35899999999999 7899999999999999999983 48999999999999999999999999995 79998
Q ss_pred EEEEEeecCC
Q 006380 449 TLKVSSVTDH 458 (647)
Q Consensus 449 ~l~v~~~~~~ 458 (647)
+|.|.++.+.
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999998753
No 153
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.52 E-value=4.8e-14 Score=120.93 Aligned_cols=78 Identities=15% Similarity=0.170 Sum_probs=73.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccCCC---eeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEE
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEPFGP---VELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 452 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~~g~---i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v 452 (647)
...+|||+|||+.+++++|+++|+.||. |..|.|+.+.. |.++|||||+|.+.++|.+||+ |++. .|.|+.|.|
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~-~~~gr~i~V 92 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRE-SMGHRYIEV 92 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTE-EETTEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCC-eECCeEEEE
Confidence 3589999999999999999999999999 89999999884 9999999999999999999997 9995 799999999
Q ss_pred Eeec
Q 006380 453 SSVT 456 (647)
Q Consensus 453 ~~~~ 456 (647)
.++.
T Consensus 93 ~~a~ 96 (118)
T 2db1_A 93 FKSH 96 (118)
T ss_dssp EEEC
T ss_pred EECC
Confidence 9986
No 154
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.52 E-value=6e-14 Score=115.79 Aligned_cols=76 Identities=14% Similarity=0.241 Sum_probs=70.1
Q ss_pred CCCCceEEecCcCCCC-CCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCCe
Q 006380 551 GSPSECLLLKNMFDPA-METDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR 629 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~-~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr 629 (647)
.+++++|||.|| |. .++ +++|.++|++||.|..|.|. +|+|||+|.+.++|.+|+..|||..|.|+
T Consensus 19 ~~~~~~l~V~nL--p~~~~t--------~~~L~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (97)
T 2xnq_A 19 SHMKSRLFIGNL--PLKNVS--------KEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIEXESQEMNFGK 85 (97)
T ss_dssp CCTTCEEEEESC--CSSCCC--------HHHHHHHHGGGSCEEEEEEC---SSEEEEEESSHHHHHHHHHHHTTSEETTE
T ss_pred CCCCCEEEEeCC--CcccCC--------HHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 466789999999 87 777 79999999999999999995 89999999999999999999999999999
Q ss_pred EEEEEEcChh
Q 006380 630 LISAIFMKPE 639 (647)
Q Consensus 630 ~l~v~~~~~~ 639 (647)
.|+|.|+.+.
T Consensus 86 ~l~V~~a~~~ 95 (97)
T 2xnq_A 86 KLILEVSSSN 95 (97)
T ss_dssp ECEEEECCCC
T ss_pred EEEEEecCCC
Confidence 9999998653
No 155
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=2.8e-14 Score=120.99 Aligned_cols=80 Identities=18% Similarity=0.243 Sum_probs=73.4
Q ss_pred CCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCCeEEE
Q 006380 553 PSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLIS 632 (647)
Q Consensus 553 ~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l~ 632 (647)
..++|||.|| |..++ +++|.++|++||.|..|.|+. ++|+|||+|.+.++|.+|+..|||..|.|+.|.
T Consensus 9 ~~~~l~V~nL--p~~~t--------e~~L~~~F~~~G~i~~v~i~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 77 (111)
T 1whx_A 9 SKTVILAKNL--PAGTL--------AAEIQETFSRFGSLGRVLLPE-GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLY 77 (111)
T ss_dssp EEEEEEEESC--CTTCC--------HHHHHHHHHTTSCEEEEECCS-SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCEEEEEEeC-CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Confidence 4568999999 88887 899999999999999999874 789999999999999999999999999999999
Q ss_pred EEEcChhhhhh
Q 006380 633 AIFMKPEDYEA 643 (647)
Q Consensus 633 v~~~~~~~~~~ 643 (647)
|.|+....|..
T Consensus 78 V~~a~~~~~~~ 88 (111)
T 1whx_A 78 LEWAPIGVFGA 88 (111)
T ss_dssp EEEEETTTTCC
T ss_pred EEECCCCccCC
Confidence 99998877654
No 156
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.2e-14 Score=121.20 Aligned_cols=82 Identities=30% Similarity=0.513 Sum_probs=76.5
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
.++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||.. ++ ..|.|+.|.|.++.
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~-~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RP-HSIDGRVVEPKRAV 104 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CS-EEETTEEEEEECCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CC-cEECCEEEEEEECC
Confidence 48999999999999999999999999999999999988999999999999999999999976 88 57999999999998
Q ss_pred CCCC
Q 006380 457 DHVG 460 (647)
Q Consensus 457 ~~~~ 460 (647)
+...
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 6544
No 157
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.52 E-value=1.3e-13 Score=115.24 Aligned_cols=78 Identities=29% Similarity=0.450 Sum_probs=70.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEe
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 454 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~ 454 (647)
.+.++|||+|||+.+++++|+++|++||.|..|.|+ +|||||+|.+.++|.+||..|++. .|.|+.|.|.+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~ 79 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGK-DLEGENIEIVF 79 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTE-EETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCC-ccCCCEEEEEE
Confidence 345899999999999999999999999999999986 459999999999999999999995 79999999999
Q ss_pred ecCCCCC
Q 006380 455 VTDHVGT 461 (647)
Q Consensus 455 ~~~~~~~ 461 (647)
+.+....
T Consensus 80 a~~~~~~ 86 (103)
T 2dgu_A 80 AKPPDQK 86 (103)
T ss_dssp CCCCCCC
T ss_pred cCCCccc
Confidence 9875543
No 158
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.52 E-value=4.7e-14 Score=119.20 Aligned_cols=81 Identities=25% Similarity=0.397 Sum_probs=74.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEee
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 455 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~ 455 (647)
..++|||+|||+.+++++|+++|+.||.|..|.|+.+..+|.++|||||+|.+.++|.+||..+ + ..|+|+.|.|.++
T Consensus 24 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~-~~l~g~~l~V~~a 101 (109)
T 2rs2_A 24 SGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-R-HELDSKTIDPKVA 101 (109)
T ss_dssp --CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-C-EEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-C-CcCCCEEEEEEEc
Confidence 3589999999999999999999999999999999999888999999999999999999999765 5 4799999999998
Q ss_pred cCC
Q 006380 456 TDH 458 (647)
Q Consensus 456 ~~~ 458 (647)
.+.
T Consensus 102 ~~~ 104 (109)
T 2rs2_A 102 FPR 104 (109)
T ss_dssp CCC
T ss_pred cCC
Confidence 754
No 159
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=8.8e-14 Score=116.42 Aligned_cols=80 Identities=16% Similarity=0.163 Sum_probs=72.8
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC---CCceEEEEeCCHHHHHHHHHHhcCcccC
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR---SAGFVYLRFESTEAAASAQRAMHMRWFA 627 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~---~~g~afV~F~~~~~A~~A~~~l~g~~~~ 627 (647)
..+.++|||.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+.++|.+|+..|||..|.
T Consensus 12 ~~~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 81 (103)
T 2cqi_A 12 DGQPRTLYVGNL--SRDVT--------EVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKIL 81 (103)
T ss_dssp SCCCCEEEEESC--CTTCC--------HHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCCCEEEEeCC--CccCC--------HHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcC
Confidence 356679999999 88887 8999999999999999999754 5799999999999999999999999999
Q ss_pred CeEEEEEEcChhh
Q 006380 628 RRLISAIFMKPED 640 (647)
Q Consensus 628 Gr~l~v~~~~~~~ 640 (647)
|+.|+|.|+.+..
T Consensus 82 g~~l~V~~a~~~~ 94 (103)
T 2cqi_A 82 GKEVKVNWATTPS 94 (103)
T ss_dssp TEEEEEEECCCTT
T ss_pred CCeEEEEECCCCc
Confidence 9999999998754
No 160
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=5.1e-14 Score=116.44 Aligned_cols=78 Identities=22% Similarity=0.334 Sum_probs=71.8
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccC--C
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFA--R 628 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~--G 628 (647)
..++++|||.|| |..++ +++|.++|++||.|..|.+... +|+|||+|.+.++|.+|++.|||..|. |
T Consensus 14 ~~~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~v~~v~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~g 82 (97)
T 1why_A 14 ANPTTRLWVGGL--GPNTS--------LAALAREFDRFGSIRTIDHVKG-DSFAYIQYESLDAAQAACAKMRGFPLGGPD 82 (97)
T ss_dssp CCCCSCEEEECC--CSSCC--------HHHHHHHHHTTSCEEEEEECSS-SCCEEEEESSHHHHHHHHHHHTTCBCSSSS
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCeeEEEEeCC-CCEEEEEECCHHHHHHHHHHHCCCEeCCCC
Confidence 356678999999 98887 8999999999999999999864 899999999999999999999999999 9
Q ss_pred eEEEEEEcChh
Q 006380 629 RLISAIFMKPE 639 (647)
Q Consensus 629 r~l~v~~~~~~ 639 (647)
+.|+|.|+.+.
T Consensus 83 ~~l~V~~a~~~ 93 (97)
T 1why_A 83 RRLRVDFAKSG 93 (97)
T ss_dssp CBCEEEECCCC
T ss_pred cEEEEEECCCC
Confidence 99999998764
No 161
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.51 E-value=5.5e-14 Score=113.68 Aligned_cols=78 Identities=18% Similarity=0.315 Sum_probs=68.9
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCHHHHHHHHHHhcCccc
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAMHMRWF 626 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~~~A~~A~~~l~g~~~ 626 (647)
.+..+|+|.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+.++|.+|+..|||..|
T Consensus 4 ~~~~~l~v~nl--p~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 73 (87)
T 3bs9_A 4 GSHFHVFVGDL--SPEIT--------TAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL 73 (87)
T ss_dssp --CEEEEEESC--CTTCC--------HHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCceEEEEeCC--CCCCC--------HHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 45678999999 88887 8999999999999999998654 378999999999999999999999999
Q ss_pred CCeEEEEEEcChh
Q 006380 627 ARRLISAIFMKPE 639 (647)
Q Consensus 627 ~Gr~l~v~~~~~~ 639 (647)
.|+.|+|.|+.+.
T Consensus 74 ~g~~l~v~~a~~k 86 (87)
T 3bs9_A 74 GGRQIRTNWATRK 86 (87)
T ss_dssp TTEECEEEEEC--
T ss_pred CCeEEEEEecCCC
Confidence 9999999998763
No 162
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=6.2e-14 Score=115.47 Aligned_cols=78 Identities=19% Similarity=0.240 Sum_probs=71.4
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCHHHHHHHHHHhcCccc
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAMHMRWF 626 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~~~A~~A~~~l~g~~~ 626 (647)
.++++|+|.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+.++|.+|++.|||..|
T Consensus 3 ~~~~~l~v~nl--p~~~t--------~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 72 (95)
T 2dnz_A 3 SGSSGLYVGSL--HFNIT--------EDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFEL 72 (95)
T ss_dssp SCCCEEEEESC--CTTCC--------HHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCS
T ss_pred CCCcEEEEeCC--CCCCC--------HHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCee
Confidence 45678999999 88887 7999999999999999999654 478999999999999999999999999
Q ss_pred CCeEEEEEEcChh
Q 006380 627 ARRLISAIFMKPE 639 (647)
Q Consensus 627 ~Gr~l~v~~~~~~ 639 (647)
.|+.|+|.++.+.
T Consensus 73 ~g~~l~V~~a~~~ 85 (95)
T 2dnz_A 73 AGRPMRVGHVTER 85 (95)
T ss_dssp SSSCCEEEESSCC
T ss_pred CCcEEEEEEcccc
Confidence 9999999998765
No 163
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=3.7e-14 Score=122.57 Aligned_cols=81 Identities=19% Similarity=0.273 Sum_probs=72.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----HhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeE
Q 006380 374 GAIDRKLYVGNLHFNMTETQLR----KLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRT 449 (647)
Q Consensus 374 ~~~~~~l~v~nLp~~~~e~~l~----~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~ 449 (647)
.++..+|||+|||+.+++++|+ ++|++||.|..|.+.. ++.++|||||+|.+.++|..|+..|||. .|.|++
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~-~l~gr~ 101 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGY-PFQGNP 101 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTC-CCTTSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCC-EeCCCE
Confidence 3446899999999999999876 6999999999998854 6788999999999999999999999996 799999
Q ss_pred EEEEeecCC
Q 006380 450 LKVSSVTDH 458 (647)
Q Consensus 450 l~v~~~~~~ 458 (647)
|.|.|+...
T Consensus 102 l~V~~a~~~ 110 (127)
T 2a3j_A 102 LVITFSETP 110 (127)
T ss_dssp CEEEECCCC
T ss_pred EEEEEccCc
Confidence 999999853
No 164
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.51 E-value=3.8e-14 Score=119.43 Aligned_cols=77 Identities=22% Similarity=0.404 Sum_probs=71.0
Q ss_pred cCCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCCe
Q 006380 550 IGSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR 629 (647)
Q Consensus 550 ~~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr 629 (647)
...++++|||.|| |..++ +++|.++|++||.|..|.|. +|+|||+|.+.++|.+|+..|||..|.|+
T Consensus 27 ~~~~~~~l~V~nL--p~~~t--------~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (108)
T 2jvo_A 27 GELSNTRLFVRPF--PLDVQ--------ESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQ 93 (108)
T ss_dssp -CCSCSEEEECSS--CTTCC--------HHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCEEEEECC--CCCCC--------HHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 3466789999999 88887 79999999999999999998 89999999999999999999999999999
Q ss_pred EEEEEEcChh
Q 006380 630 LISAIFMKPE 639 (647)
Q Consensus 630 ~l~v~~~~~~ 639 (647)
.|.|.|+.+.
T Consensus 94 ~l~V~~a~~~ 103 (108)
T 2jvo_A 94 PLEVVYSKLP 103 (108)
T ss_dssp ECEEESCSCC
T ss_pred EEEEEEecCC
Confidence 9999998764
No 165
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=1.2e-14 Score=114.52 Aligned_cols=76 Identities=26% Similarity=0.457 Sum_probs=71.8
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEee
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 455 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~ 455 (647)
++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+..++ . .+.|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~-~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-H-ELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-C-CCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-C-ccCCEEEEEEec
Confidence 479999999999999999999999999999999998889999999999999999999998888 4 699999999886
No 166
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=5.7e-14 Score=117.93 Aligned_cols=76 Identities=28% Similarity=0.381 Sum_probs=71.3
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
..+|||+|||+.+++++|+++|+.| .|..|.|+.+. .|.++|||||+|.+.++|.+|| .+++. .|+|+.|.|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~-~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRM-LMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTE-EETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCC-eECCeEEEEEECC
Confidence 4799999999999999999999999 89999999997 5999999999999999999999 79995 7999999998876
No 167
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=1.4e-13 Score=116.17 Aligned_cols=76 Identities=18% Similarity=0.214 Sum_probs=70.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCC-----eEE
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG-----RTL 450 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g-----~~l 450 (647)
...+|||+|||+.+++++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||+.||+. .|.| +.|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~-~~~g~~~~~~~i 85 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNT-KFRSHEGETAYI 85 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSE-EEECTTSCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcC-CccCCcCcceEE
Confidence 4589999999999999999999999999999999875 89999999999999999999995 7999 999
Q ss_pred EEEeecCCC
Q 006380 451 KVSSVTDHV 459 (647)
Q Consensus 451 ~v~~~~~~~ 459 (647)
.|.++.+..
T Consensus 86 ~V~~a~~~~ 94 (108)
T 1x4c_A 86 RVKVDGPRS 94 (108)
T ss_dssp EEEESSCCS
T ss_pred EEEeCCCCC
Confidence 999998754
No 168
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=3.5e-14 Score=118.93 Aligned_cols=80 Identities=25% Similarity=0.291 Sum_probs=70.7
Q ss_pred CCCceEEEcCCCCC-CCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCC-eeeCCeEEEE
Q 006380 375 AIDRKLYVGNLHFN-MTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK-LEIVGRTLKV 452 (647)
Q Consensus 375 ~~~~~l~v~nLp~~-~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~-~~~~g~~l~v 452 (647)
.+.++|||+|||+. +++++|+++|++||.|..|.|++. +|||||+|.+.++|..|+..|++. +.|.|++|.|
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 34689999999998 999999999999999999999753 799999999999999999988642 4599999999
Q ss_pred EeecCCCC
Q 006380 453 SSVTDHVG 460 (647)
Q Consensus 453 ~~~~~~~~ 460 (647)
.|+.....
T Consensus 97 ~~a~~~~~ 104 (112)
T 1x4f_A 97 DLSEKYKK 104 (112)
T ss_dssp EEECSCSS
T ss_pred EECccccc
Confidence 99986543
No 169
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=1.6e-13 Score=114.57 Aligned_cols=84 Identities=32% Similarity=0.434 Sum_probs=74.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEE
Q 006380 373 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 452 (647)
Q Consensus 373 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v 452 (647)
...+.++|||+|||+.+++++|+++|+.|+ .|.++.+..++.++|||||+|.+.++|.+||..|++. .|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~V 86 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDG-EIDGNKVTL 86 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTC-EETTEECEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC-eECCeEEEE
Confidence 344569999999999999999999999874 5677777778999999999999999999999999995 799999999
Q ss_pred EeecCCCC
Q 006380 453 SSVTDHVG 460 (647)
Q Consensus 453 ~~~~~~~~ 460 (647)
.|+.+...
T Consensus 87 ~~a~~~~~ 94 (102)
T 2fc8_A 87 DWAKPKGE 94 (102)
T ss_dssp EECCCCCS
T ss_pred EEecCCCC
Confidence 99986543
No 170
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.3e-13 Score=116.66 Aligned_cols=79 Identities=20% Similarity=0.325 Sum_probs=71.8
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC--CCceEEEEeCCHHHHHHHHHHhcCcccCC
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR--SAGFVYLRFESTEAAASAQRAMHMRWFAR 628 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~--~~g~afV~F~~~~~A~~A~~~l~g~~~~G 628 (647)
..+.++|||.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+.++|.+|++.|||..|.|
T Consensus 19 ~~~~~~l~V~nL--p~~~t--------~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 88 (109)
T 1x4a_A 19 GNNDCRIYVGNL--PPDIR--------TKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDG 88 (109)
T ss_dssp CCCSSEEEEESC--CTTCC--------HHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 356679999999 88887 8999999999999999998654 57999999999999999999999999999
Q ss_pred eEEEEEEcChh
Q 006380 629 RLISAIFMKPE 639 (647)
Q Consensus 629 r~l~v~~~~~~ 639 (647)
+.|+|.|+.+.
T Consensus 89 ~~l~V~~a~~~ 99 (109)
T 1x4a_A 89 YRLRVEFPRSG 99 (109)
T ss_dssp EECEEECCCCC
T ss_pred eEEEEEEcccC
Confidence 99999998765
No 171
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.50 E-value=5.3e-14 Score=114.08 Aligned_cols=77 Identities=22% Similarity=0.310 Sum_probs=70.0
Q ss_pred CCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC------CCceEEEEeCCHHHHHHHHHHhcCccc
Q 006380 553 PSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR------SAGFVYLRFESTEAAASAQRAMHMRWF 626 (647)
Q Consensus 553 ~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~------~~g~afV~F~~~~~A~~A~~~l~g~~~ 626 (647)
..++|+|.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+.++|.+|+..|||..|
T Consensus 3 ~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 72 (88)
T 4a8x_A 3 KPTKVHIGRL--TRNVT--------KDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQI 72 (88)
T ss_dssp CCCEEEEECC--CTTCC--------HHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEeCC--CCCCC--------HHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeE
Confidence 3468999999 98888 7999999999999999988543 589999999999999999999999999
Q ss_pred CCeEEEEEEcChh
Q 006380 627 ARRLISAIFMKPE 639 (647)
Q Consensus 627 ~Gr~l~v~~~~~~ 639 (647)
.|+.|+|+++.+.
T Consensus 73 ~g~~l~v~~a~~~ 85 (88)
T 4a8x_A 73 DGQEITATAVLAP 85 (88)
T ss_dssp TTEECEEEEECCC
T ss_pred CCeEEEEEECCCC
Confidence 9999999998764
No 172
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.50 E-value=4e-14 Score=123.82 Aligned_cols=79 Identities=14% Similarity=0.158 Sum_probs=73.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccCCC---eeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEE
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGP---VELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLK 451 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~g~---i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~ 451 (647)
....+|||+|||+.+++++|+++|+.||. |..|.|+.+.. |.++|||||+|.+.++|.+||+ |++. .|+|+.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~-~l~gr~i~ 118 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRE-SMGHRYIE 118 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEE-ESSSSEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCC-EECCEEEE
Confidence 34589999999999999999999999999 88999999985 9999999999999999999997 9995 79999999
Q ss_pred EEeec
Q 006380 452 VSSVT 456 (647)
Q Consensus 452 v~~~~ 456 (647)
|.++.
T Consensus 119 V~~a~ 123 (136)
T 2hgl_A 119 VFKSH 123 (136)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 99986
No 173
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.50 E-value=1.6e-14 Score=152.47 Aligned_cols=79 Identities=15% Similarity=0.236 Sum_probs=71.9
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCHHHHHHHHHHhcCccc
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAMHMRWF 626 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~~~A~~A~~~l~g~~~ 626 (647)
.+.++|||.|| |..++ +++|.++|++||.|+.|.|+.+ ++|||||+|.+.++|.+||..|||..|
T Consensus 100 ~~~~~lfV~nL--~~~~t--------e~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i 169 (437)
T 3pgw_S 100 DAFKTLFVARV--NYDTT--------ESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKI 169 (437)
T ss_pred CCCCEEEEeCC--CCCCC--------HHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEE
Confidence 45678999999 88887 7999999999999999998654 589999999999999999999999999
Q ss_pred CCeEEEEEEcChhh
Q 006380 627 ARRLISAIFMKPED 640 (647)
Q Consensus 627 ~Gr~l~v~~~~~~~ 640 (647)
.|+.|.|.|+.+..
T Consensus 170 ~gr~i~V~~a~~~~ 183 (437)
T 3pgw_S 170 DGRRVLVDVERGRT 183 (437)
T ss_pred CCEEEEEEEeCCCC
Confidence 99999999997654
No 174
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=7.6e-14 Score=112.29 Aligned_cols=77 Identities=31% Similarity=0.389 Sum_probs=69.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHH-cCCeeeCCeEEE
Q 006380 373 YGAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSAL-NGKLEIVGRTLK 451 (647)
Q Consensus 373 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l-~g~~~~~g~~l~ 451 (647)
.....++|||+|||..+++++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|+..| ++. .+.|+.|.
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~-~~~g~~l~ 80 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKL-IVNGRRLN 80 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTC-EETTEECC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCe-eECCCEEE
Confidence 3445689999999999999999999999999999999874 799999999999999999888 885 79999999
Q ss_pred EEeec
Q 006380 452 VSSVT 456 (647)
Q Consensus 452 v~~~~ 456 (647)
|.|+.
T Consensus 81 v~~ak 85 (85)
T 2ytc_A 81 VKWGR 85 (85)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99973
No 175
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.50 E-value=6.7e-14 Score=112.07 Aligned_cols=75 Identities=13% Similarity=0.122 Sum_probs=69.2
Q ss_pred ceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCHHHHHHHHHHhcCcccCCe
Q 006380 555 ECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAMHMRWFARR 629 (647)
Q Consensus 555 ~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr 629 (647)
.+|+|.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+.++|.+|+..|||..|.|+
T Consensus 2 ~~l~V~nl--p~~~t--------~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~ 71 (83)
T 3md1_A 2 FNLFVGDL--NVNVD--------DETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGR 71 (83)
T ss_dssp EEEEEECC--CTTCC--------HHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred eEEEEeCC--CCCCC--------HHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 57999999 98888 7999999999999999988654 378999999999999999999999999999
Q ss_pred EEEEEEcChh
Q 006380 630 LISAIFMKPE 639 (647)
Q Consensus 630 ~l~v~~~~~~ 639 (647)
.|.|.++.+.
T Consensus 72 ~l~v~~a~~~ 81 (83)
T 3md1_A 72 PLRINWAAKL 81 (83)
T ss_dssp ECEEEECCCC
T ss_pred EEEEEecCcC
Confidence 9999998875
No 176
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.1e-13 Score=113.60 Aligned_cols=75 Identities=25% Similarity=0.404 Sum_probs=69.1
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCHHHHHHHHHHhcCccc
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAMHMRWF 626 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~~~A~~A~~~l~g~~~ 626 (647)
++.++|+|.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+.++|.+|++.|||..|
T Consensus 14 ~~~~~l~V~nl--p~~~t--------~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 83 (94)
T 2e5h_A 14 PSKSTVYVSNL--PFSLT--------NNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQL 83 (94)
T ss_dssp CCTTSEEEESC--CTTSC--------HHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEE
T ss_pred CCCCEEEEECC--CCCCC--------HHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCee
Confidence 55678999999 98887 7999999999999999999654 478999999999999999999999999
Q ss_pred CCeEEEEEEc
Q 006380 627 ARRLISAIFM 636 (647)
Q Consensus 627 ~Gr~l~v~~~ 636 (647)
.|+.|+|.|+
T Consensus 84 ~g~~l~v~~a 93 (94)
T 2e5h_A 84 FGRVIKASIA 93 (94)
T ss_dssp TTEEEEEEEC
T ss_pred CCcEEEEEec
Confidence 9999999986
No 177
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.3e-13 Score=115.31 Aligned_cols=81 Identities=20% Similarity=0.277 Sum_probs=73.3
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC---CCceEEEEeCCHHHHHHHHHHhcCcccC
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR---SAGFVYLRFESTEAAASAQRAMHMRWFA 627 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~---~~g~afV~F~~~~~A~~A~~~l~g~~~~ 627 (647)
..+.++|||.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+.++|.+|+..|||..|.
T Consensus 12 ~~~~~~l~V~nl--p~~~t--------~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 81 (103)
T 2cq3_A 12 KSTPKRLHVSNI--PFRFR--------DPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE 81 (103)
T ss_dssp SCCCCEEEEESC--CTTCC--------HHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 356678999999 88888 7999999999999999999754 4899999999999999999999999999
Q ss_pred CeEEEEEEcChhhh
Q 006380 628 RRLISAIFMKPEDY 641 (647)
Q Consensus 628 Gr~l~v~~~~~~~~ 641 (647)
|+.|+|.++.+...
T Consensus 82 g~~l~v~~a~~~~~ 95 (103)
T 2cq3_A 82 GRKIEVNNATARVM 95 (103)
T ss_dssp TEECEEEECCSSCC
T ss_pred CEEEEEEEcccCCC
Confidence 99999999987654
No 178
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.50 E-value=2e-14 Score=119.41 Aligned_cols=84 Identities=14% Similarity=0.228 Sum_probs=70.7
Q ss_pred CCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCHHHHHHHHHHhcCcccC
Q 006380 553 PSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAMHMRWFA 627 (647)
Q Consensus 553 ~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~~~A~~A~~~l~g~~~~ 627 (647)
.+++|||.|| |.... ..+...+++|.++|++||.|..|.|+.+ ++|+|||+|.+.++|.+|++.|||..|.
T Consensus 5 ~~~~vfV~nL--p~v~~--~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~ 80 (100)
T 3ns6_A 5 SDQYIVVNGA--PVIPS--AKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLD 80 (100)
T ss_dssp GGGEEEEESC--CCCBG--GGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred cCcEEEEeCC--CcCCh--HHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccC
Confidence 3578999999 87211 2222337999999999999999998643 4799999999999999999999999999
Q ss_pred C-eEEEEEEcChhh
Q 006380 628 R-RLISAIFMKPED 640 (647)
Q Consensus 628 G-r~l~v~~~~~~~ 640 (647)
| +.|.|.++.+.+
T Consensus 81 g~r~l~V~~a~~~~ 94 (100)
T 3ns6_A 81 LKHRLFLYTMKDVE 94 (100)
T ss_dssp SSCBCEEEESHHHH
T ss_pred CCeEEEEEECchhh
Confidence 9 999999998754
No 179
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=1.4e-13 Score=113.72 Aligned_cols=77 Identities=25% Similarity=0.436 Sum_probs=70.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeC--CeEEEE
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIV--GRTLKV 452 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~--g~~l~v 452 (647)
++.++|||+|||..+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|+..|++. .|. |+.|.|
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~-~~~~~g~~l~V 87 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGF-PLGGPDRRLRV 87 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTC-BCSSSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCC-EeCCCCcEEEE
Confidence 44589999999999999999999999999999999764 789999999999999999999996 788 999999
Q ss_pred EeecCC
Q 006380 453 SSVTDH 458 (647)
Q Consensus 453 ~~~~~~ 458 (647)
.|+.+.
T Consensus 88 ~~a~~~ 93 (97)
T 1why_A 88 DFAKSG 93 (97)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 999864
No 180
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.50 E-value=8.5e-15 Score=119.33 Aligned_cols=80 Identities=38% Similarity=0.639 Sum_probs=73.3
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecC
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 457 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~ 457 (647)
++|||+|||..+++++|+++|+.||.|..|.|+.+..++.++|||||+|.+.+ |.+|+..|+|. .|.|+.|.|.++.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~-~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNT-DFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSS-CCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCC-EECCeEEEEEEcCC
Confidence 58999999999999999999999999999999999888999999999999999 99999999996 79999999999985
Q ss_pred CC
Q 006380 458 HV 459 (647)
Q Consensus 458 ~~ 459 (647)
..
T Consensus 80 ~~ 81 (90)
T 2ki2_A 80 KK 81 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 181
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=9.4e-14 Score=115.32 Aligned_cols=80 Identities=21% Similarity=0.325 Sum_probs=72.7
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCHHHHHHHHHHhcCcc
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAMHMRW 625 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~~~A~~A~~~l~g~~ 625 (647)
..++++|||.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+.++|.+|+..|||..
T Consensus 5 ~~~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 74 (99)
T 1whw_A 5 SSGSGRLFVRNL--SYTSS--------EEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQV 74 (99)
T ss_dssp CCSCEEEEEECC--CTTCC--------HHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEE
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCE
Confidence 356678999999 98887 7999999999999999999654 47999999999999999999999999
Q ss_pred cCCeEEEEEEcChhh
Q 006380 626 FARRLISAIFMKPED 640 (647)
Q Consensus 626 ~~Gr~l~v~~~~~~~ 640 (647)
|.|+.|.|.++.+..
T Consensus 75 ~~g~~l~V~~a~~~~ 89 (99)
T 1whw_A 75 FQGRMLHVLPSTIKK 89 (99)
T ss_dssp SSSCEEEEEECCCCS
T ss_pred ECCcEEEEEEcCCCc
Confidence 999999999998764
No 182
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=7.8e-14 Score=114.87 Aligned_cols=78 Identities=24% Similarity=0.333 Sum_probs=70.4
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCHHHHHHHHHHhcCcc
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAMHMRW 625 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~~~A~~A~~~l~g~~ 625 (647)
..++++|+|.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+.++|.+|+..|||..
T Consensus 12 ~~~~~~l~v~nl--p~~~t--------~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 81 (95)
T 2cqc_A 12 PDPNCCLGVFGL--SLYTT--------ERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGME 81 (95)
T ss_dssp CCGGGCEEEESC--CSSCC--------HHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred CCCCCEEEEECC--CCCCC--------HHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCE
Confidence 356678999999 98887 7999999999999999998643 46899999999999999999999999
Q ss_pred cCCeEEEEEEcCh
Q 006380 626 FARRLISAIFMKP 638 (647)
Q Consensus 626 ~~Gr~l~v~~~~~ 638 (647)
|.|+.|+|.|+..
T Consensus 82 ~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 82 LDGRRIRVSGPSS 94 (95)
T ss_dssp ETTEEEEEECCSC
T ss_pred ECCEEEEEEecCC
Confidence 9999999999764
No 183
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=8.9e-14 Score=117.33 Aligned_cols=80 Identities=23% Similarity=0.392 Sum_probs=73.0
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC------CCceEEEEeCCHHHHHHHHHHh-cC
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR------SAGFVYLRFESTEAAASAQRAM-HM 623 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~------~~g~afV~F~~~~~A~~A~~~l-~g 623 (647)
..+.++|||.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+.++|.+|+..| ||
T Consensus 12 ~~~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~ 81 (107)
T 2cph_A 12 KQTTSKILVRNI--PFQAN--------QREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHS 81 (107)
T ss_dssp SSCCCCEEEESC--CTTCC--------HHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTC
T ss_pred CCCCCEEEEeCC--CCcCC--------HHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccC
Confidence 356678999999 98888 8999999999999999999765 3899999999999999999999 99
Q ss_pred cccCCeEEEEEEcChhh
Q 006380 624 RWFARRLISAIFMKPED 640 (647)
Q Consensus 624 ~~~~Gr~l~v~~~~~~~ 640 (647)
..|.|+.|+|.|+.+..
T Consensus 82 ~~~~g~~l~v~~a~~~~ 98 (107)
T 2cph_A 82 THLYGRRLVLEWADSEV 98 (107)
T ss_dssp CBSSSCBCEEEECCCCC
T ss_pred CeECCCEEEEEeCCCCC
Confidence 99999999999998764
No 184
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=9.3e-14 Score=116.73 Aligned_cols=80 Identities=16% Similarity=0.140 Sum_probs=72.6
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCHHHHHHHHHHhcCcc
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAMHMRW 625 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~~~A~~A~~~l~g~~ 625 (647)
..+..+|||.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+.++|.+|+..|||..
T Consensus 12 ~~~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 81 (105)
T 1x5u_A 12 RNQDATVYVGGL--DEKVS--------EPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIK 81 (105)
T ss_dssp CCTTTEEEEECC--CTTCC--------HHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCB
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCe
Confidence 356679999999 88888 7999999999999999999654 47899999999999999999999999
Q ss_pred cCCeEEEEEEcChhh
Q 006380 626 FARRLISAIFMKPED 640 (647)
Q Consensus 626 ~~Gr~l~v~~~~~~~ 640 (647)
|.|+.|+|.++.+..
T Consensus 82 ~~g~~l~v~~a~~~~ 96 (105)
T 1x5u_A 82 LYGKPIRVNKASAHN 96 (105)
T ss_dssp CSSCBCEEEETTTTS
T ss_pred ECCeEEEEEECCCCC
Confidence 999999999988754
No 185
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4.8e-14 Score=117.85 Aligned_cols=80 Identities=20% Similarity=0.295 Sum_probs=72.9
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCHHHHHHHHHHhcCcc
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAMHMRW 625 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~~~A~~A~~~l~g~~ 625 (647)
..+.++|||.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+.++|.+|++.|||..
T Consensus 9 ~~~~~~l~V~nL--p~~~t--------~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 78 (102)
T 2cqb_A 9 ATTKRVLYVGGL--AEEVD--------DKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE 78 (102)
T ss_dssp CCCCSCEEEESC--CSSCC--------HHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEE
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 356678999999 88887 7999999999999999999654 58999999999999999999999999
Q ss_pred cCCeEEEEEEcChhh
Q 006380 626 FARRLISAIFMKPED 640 (647)
Q Consensus 626 ~~Gr~l~v~~~~~~~ 640 (647)
|.|+.|+|.|+.+..
T Consensus 79 ~~g~~l~V~~a~~~~ 93 (102)
T 2cqb_A 79 LFGRTIRVNLAKPMR 93 (102)
T ss_dssp ETTEEEEEEECCCCC
T ss_pred ECCcEEEEEeCCCCC
Confidence 999999999988764
No 186
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.2e-13 Score=114.92 Aligned_cols=79 Identities=20% Similarity=0.329 Sum_probs=71.5
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC----CCceEEEEeCCHHHHHHHHHHhcCccc
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR----SAGFVYLRFESTEAAASAQRAMHMRWF 626 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~----~~g~afV~F~~~~~A~~A~~~l~g~~~ 626 (647)
..+.++|+|.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+.++|.+|+..|||..|
T Consensus 14 ~~~~~~l~v~nl--p~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 83 (100)
T 2do4_A 14 SLEKHKLFISGL--PFSCT--------KEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTI 83 (100)
T ss_dssp CCCCSCEEEESC--CTTCC--------HHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEES
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEE
Confidence 355678999999 98888 7999999999999999998654 368999999999999999999999999
Q ss_pred CCeEEEEEEcChh
Q 006380 627 ARRLISAIFMKPE 639 (647)
Q Consensus 627 ~Gr~l~v~~~~~~ 639 (647)
.|+.|+|.|+.+.
T Consensus 84 ~g~~l~v~~a~~~ 96 (100)
T 2do4_A 84 KENIIKVAISNSG 96 (100)
T ss_dssp SSCEEEEEECCCC
T ss_pred CCEEEEEEECCCC
Confidence 9999999998764
No 187
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=1.2e-13 Score=114.71 Aligned_cols=78 Identities=33% Similarity=0.569 Sum_probs=71.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEe
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 454 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~ 454 (647)
.+.++|||+|||+.+++++|+++|+.||.|..|.|+.+ +|||||+|.+.++|.+|+..|++. .|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~-~~~g~~l~v~~ 85 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNM-PLRGKQLRVRF 85 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTC-CBTTBCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCC-EeCCceEEEEE
Confidence 34589999999999999999999999999999999865 789999999999999999999996 79999999999
Q ss_pred ecCCC
Q 006380 455 VTDHV 459 (647)
Q Consensus 455 ~~~~~ 459 (647)
+.+..
T Consensus 86 a~~~~ 90 (99)
T 2cpj_A 86 ACHSA 90 (99)
T ss_dssp SSCCS
T ss_pred cCCCC
Confidence 98644
No 188
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=1.3e-13 Score=116.48 Aligned_cols=77 Identities=17% Similarity=0.205 Sum_probs=70.9
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCC---
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFAR--- 628 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~G--- 628 (647)
.+..+|||.|| |..++ +++|.++|.+||.|..|.|..+ |+|||+|.+.++|.+||+.|||..|.|
T Consensus 13 ~~~~~l~V~nL--p~~~t--------~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~ 80 (108)
T 1x4c_A 13 RSENRVVVSGL--PPSGS--------WQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEG 80 (108)
T ss_dssp SCCCEEEEESC--CSSCC--------HHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTS
T ss_pred CCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcC
Confidence 34568999999 98888 8999999999999999999876 999999999999999999999999999
Q ss_pred --eEEEEEEcChhh
Q 006380 629 --RLISAIFMKPED 640 (647)
Q Consensus 629 --r~l~v~~~~~~~ 640 (647)
+.|+|.++.+..
T Consensus 81 ~~~~i~V~~a~~~~ 94 (108)
T 1x4c_A 81 ETAYIRVKVDGPRS 94 (108)
T ss_dssp CEEEEEEEESSCCS
T ss_pred cceEEEEEeCCCCC
Confidence 999999988743
No 189
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=5.7e-14 Score=117.63 Aligned_cols=79 Identities=16% Similarity=0.286 Sum_probs=70.1
Q ss_pred CCCCceEEecCcCCCCC-CCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcC--cccC
Q 006380 551 GSPSECLLLKNMFDPAM-ETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHM--RWFA 627 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~-~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g--~~~~ 627 (647)
..++++|||.|| |.. ++ +++|.++|++||.|..|.|.+ ++|+|||+|.+.++|.+|++.|++ ..|.
T Consensus 22 ~~p~~~l~V~NL--p~~~~t--------e~~L~~lF~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~ 90 (112)
T 1x4f_A 22 QELGRVIHLSNL--PHSGYS--------DSAVLKLAEPYGKIKNYILMR-MKSQAFIEMETREDAMAMVDHCLKKALWFQ 90 (112)
T ss_dssp SCCCCEEEEESC--CCSSCC--------SHHHHTTTTTTSCCSEEEEET-TTTEEEEECSSHHHHHHHHHHHHHSCCCSS
T ss_pred CCCCCEEEEeCC--CCccCC--------HHHHHHHHHhcCCEEEEEEec-CCCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 456789999999 886 77 699999999999999999974 689999999999999999999875 5699
Q ss_pred CeEEEEEEcChhh
Q 006380 628 RRLISAIFMKPED 640 (647)
Q Consensus 628 Gr~l~v~~~~~~~ 640 (647)
|++|.|.|+....
T Consensus 91 Gr~l~V~~a~~~~ 103 (112)
T 1x4f_A 91 GRCVKVDLSEKYK 103 (112)
T ss_dssp SSCCEEEEECSCS
T ss_pred CEEEEEEECcccc
Confidence 9999999987644
No 190
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.49 E-value=9.6e-14 Score=118.75 Aligned_cols=81 Identities=15% Similarity=0.208 Sum_probs=72.7
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCHHHHHHHHHHhcCcc
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAMHMRW 625 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~~~A~~A~~~l~g~~ 625 (647)
..+.++|||.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+.++|.+|+..|||..
T Consensus 22 ~~~~~~l~V~nL--p~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 91 (115)
T 2cpz_A 22 GPEGANLFIYHL--PQEFG--------DQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQ 91 (115)
T ss_dssp CSTTCCEEEESC--CSSCC--------HHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCE
Confidence 356678999999 98888 7999999999999999988654 36899999999999999999999999
Q ss_pred cCCeEEEEEEcChhhh
Q 006380 626 FARRLISAIFMKPEDY 641 (647)
Q Consensus 626 ~~Gr~l~v~~~~~~~~ 641 (647)
|.|+.|+|.|+.+..-
T Consensus 92 ~~g~~l~V~~a~~~~~ 107 (115)
T 2cpz_A 92 IGMKRLKVQLKRSKND 107 (115)
T ss_dssp ETTEECEEECCCCSCC
T ss_pred ECCEEEEEEEcCCCCc
Confidence 9999999999887653
No 191
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.49 E-value=7.7e-14 Score=120.54 Aligned_cols=85 Identities=21% Similarity=0.266 Sum_probs=70.9
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEec--CCCceEEEEeCCHHHHHHHHHHhcCcccCC
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDK--RSAGFVYLRFESTEAAASAQRAMHMRWFAR 628 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~--~~~g~afV~F~~~~~A~~A~~~l~g~~~~G 628 (647)
..++++|||.|| |..++. .+|.+.|.++|++||.|..|.+.. .++|+|||+|.+.++|..|+..|||..|.|
T Consensus 26 ~~p~~~LfV~nL--~~~~~e----~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g 99 (127)
T 2a3j_A 26 TEPSQVVLITNI--NPEVPK----EKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQG 99 (127)
T ss_dssp CSCCSEEEEESC--CTTSCH----HHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT
T ss_pred CCCCCEEEEeCC--CCCCCH----HHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC
Confidence 356789999999 887762 112234568999999999998864 468999999999999999999999999999
Q ss_pred eEEEEEEcChhhh
Q 006380 629 RLISAIFMKPEDY 641 (647)
Q Consensus 629 r~l~v~~~~~~~~ 641 (647)
++|+|.|+.....
T Consensus 100 r~l~V~~a~~~~~ 112 (127)
T 2a3j_A 100 NPLVITFSETPQS 112 (127)
T ss_dssp SCCEEEECCCCCH
T ss_pred CEEEEEEccCcch
Confidence 9999999987553
No 192
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=1.2e-13 Score=112.46 Aligned_cols=77 Identities=29% Similarity=0.447 Sum_probs=70.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEe
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 454 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~ 454 (647)
.+.++|||+|||..+++++|+++|++||.|..|.|+ +|||||+|.+.++|.+|+..|++. .|.|+.|.|.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v~~ 76 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHY-KLHGVNINVEA 76 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTC-BCSSCBCEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCC-ccCCcEEEEEE
Confidence 345899999999999999999999999999999996 579999999999999999999995 79999999999
Q ss_pred ecCCCC
Q 006380 455 VTDHVG 460 (647)
Q Consensus 455 ~~~~~~ 460 (647)
+.+...
T Consensus 77 a~~~~~ 82 (90)
T 2dnq_A 77 SKNKSK 82 (90)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 986543
No 193
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=6.2e-14 Score=118.51 Aligned_cols=79 Identities=20% Similarity=0.295 Sum_probs=72.1
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC---CCceEEEEeCCHHHHHHHHHHhcCcccC
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR---SAGFVYLRFESTEAAASAQRAMHMRWFA 627 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~---~~g~afV~F~~~~~A~~A~~~l~g~~~~ 627 (647)
..+.++|||.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+.++|.+|+..|||..|+
T Consensus 26 ~~~~~~l~V~nL--p~~~t--------e~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~ 95 (109)
T 2err_A 26 KSQPKRLHVSNI--PFRFR--------DPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE 95 (109)
T ss_dssp TTCCCEEEEESC--CTTCC--------HHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEECC--CCcCC--------HHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 456788999999 88887 8999999999999999999644 4899999999999999999999999999
Q ss_pred CeEEEEEEcChh
Q 006380 628 RRLISAIFMKPE 639 (647)
Q Consensus 628 Gr~l~v~~~~~~ 639 (647)
|+.|.|.++.+.
T Consensus 96 g~~l~V~~a~~~ 107 (109)
T 2err_A 96 GRKIEVNNATAR 107 (109)
T ss_dssp TEECEEEECCCS
T ss_pred CEEEEEEECCCC
Confidence 999999998764
No 194
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=1.3e-13 Score=112.81 Aligned_cols=77 Identities=18% Similarity=0.276 Sum_probs=70.7
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCCeE
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRL 630 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~ 630 (647)
..+.++|||.|| |..++ +++|.++|++||.|..|.|. +++|||+|.+.++|.+|+..|||..|.|+.
T Consensus 7 ~~~~~~l~V~nL--p~~~t--------~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 73 (92)
T 2dgt_A 7 GKASTKLHVGNI--SPTCT--------NQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKR 73 (92)
T ss_dssp CCSSEEEEEESC--CSSCC--------HHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 456678999999 88887 89999999999999999998 569999999999999999999999999999
Q ss_pred EEEEEcChhh
Q 006380 631 ISAIFMKPED 640 (647)
Q Consensus 631 l~v~~~~~~~ 640 (647)
|+|.++.+..
T Consensus 74 l~V~~a~~~~ 83 (92)
T 2dgt_A 74 MHVQLSTSRL 83 (92)
T ss_dssp EEEEESSCCC
T ss_pred EEEEEccCCC
Confidence 9999987653
No 195
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.1e-13 Score=114.02 Aligned_cols=77 Identities=13% Similarity=0.153 Sum_probs=69.8
Q ss_pred CCceEEecCcCCCCCCCCchhhhhhHHHHH----HHhhccCCeEEEEEecC--CCceEEEEeCCHHHHHHHHHHhcCccc
Q 006380 553 PSECLLLKNMFDPAMETDPDFDLEIQGDVE----EECSKYGRVKHIYVDKR--SAGFVYLRFESTEAAASAQRAMHMRWF 626 (647)
Q Consensus 553 ~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~----~~f~~~G~v~~v~l~~~--~~g~afV~F~~~~~A~~A~~~l~g~~~ 626 (647)
...+|||.|| |..++ +++|+ ++|++||.|..|.|..+ .+|+|||+|.+.++|.+|++.|||..|
T Consensus 8 ~~~~l~V~nL--~~~~~--------~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~ 77 (96)
T 2dgx_A 8 NGADVQVSNI--DYRLS--------RKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKI 77 (96)
T ss_dssp SCEEEEEESC--CTTSC--------HHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEE
T ss_pred CCCEEEEECC--CCCCC--------HHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4468999999 98887 78888 99999999999999744 389999999999999999999999999
Q ss_pred CCeEEEEEEcChh
Q 006380 627 ARRLISAIFMKPE 639 (647)
Q Consensus 627 ~Gr~l~v~~~~~~ 639 (647)
.|+.|+|.++.+.
T Consensus 78 ~gr~l~V~~a~~~ 90 (96)
T 2dgx_A 78 GSKKILVSLATGA 90 (96)
T ss_dssp TTEEEEEEECCCS
T ss_pred CCeEEEEEEcCCC
Confidence 9999999998765
No 196
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.49 E-value=9.9e-14 Score=116.91 Aligned_cols=79 Identities=16% Similarity=0.203 Sum_probs=71.3
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCHHHHHHHHHHhcCcc
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAMHMRW 625 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~~~A~~A~~~l~g~~ 625 (647)
..++.+|||.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+.++|.+|++.|||..
T Consensus 23 ~~~~~~l~V~nL--p~~~t--------e~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~ 92 (108)
T 2jrs_A 23 SAGPMRLYVGSL--HFNIT--------EDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 92 (108)
T ss_dssp CSSCEEEEEECC--CSSCC--------HHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCC
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCE
Confidence 355678999999 88887 8999999999999999988643 37899999999999999999999999
Q ss_pred cCCeEEEEEEcChh
Q 006380 626 FARRLISAIFMKPE 639 (647)
Q Consensus 626 ~~Gr~l~v~~~~~~ 639 (647)
|.|+.|+|.++.+.
T Consensus 93 i~g~~l~V~~a~~k 106 (108)
T 2jrs_A 93 LAGRPMKVGHVTER 106 (108)
T ss_dssp SSSSCCEEECSCSS
T ss_pred ECCEEEEEEEcccC
Confidence 99999999998764
No 197
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=5.5e-14 Score=116.05 Aligned_cols=79 Identities=20% Similarity=0.348 Sum_probs=71.8
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEE-EEecC-----CCceEEEEeCCHHHHHHHHHHhcCcc
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHI-YVDKR-----SAGFVYLRFESTEAAASAQRAMHMRW 625 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v-~l~~~-----~~g~afV~F~~~~~A~~A~~~l~g~~ 625 (647)
.+.++|||.|| |..++ +++|.++|++||.|..| .|..+ ++|+|||+|.+.++|.+|+..|||..
T Consensus 3 ~~~~~l~V~nL--p~~~t--------~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 72 (96)
T 1x5t_A 3 SGSSGIFIGNL--DPEID--------EKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQY 72 (96)
T ss_dssp SCCCEEEEECC--CTTCC--------HHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCE
T ss_pred CCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCE
Confidence 45678999999 98887 89999999999999999 88654 48999999999999999999999999
Q ss_pred cCCeEEEEEEcChhh
Q 006380 626 FARRLISAIFMKPED 640 (647)
Q Consensus 626 ~~Gr~l~v~~~~~~~ 640 (647)
|.|+.|+|.|+.+..
T Consensus 73 ~~g~~l~v~~a~~~~ 87 (96)
T 1x5t_A 73 LCNRPITVSYAFKKD 87 (96)
T ss_dssp ETTEECEEEESCCCC
T ss_pred ECCEEEEEEEecccC
Confidence 999999999987754
No 198
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=6.5e-14 Score=117.02 Aligned_cols=80 Identities=25% Similarity=0.316 Sum_probs=72.5
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCHHHHHHHHHHhcCcc
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAMHMRW 625 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~~~A~~A~~~l~g~~ 625 (647)
..+.++|||.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+.++|.+|++.|||..
T Consensus 9 ~~~~~~l~v~nL--p~~~t--------~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 78 (102)
T 1x5s_A 9 ASDEGKLFVGGL--SFDTN--------EQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 78 (102)
T ss_dssp CCCCSEEEEESC--CTTCC--------HHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCC
T ss_pred CCCCCEEEEECC--CCCCC--------HHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCE
Confidence 356678999999 98888 8999999999999999999754 57899999999999999999999999
Q ss_pred cCCeEEEEEEcChhh
Q 006380 626 FARRLISAIFMKPED 640 (647)
Q Consensus 626 ~~Gr~l~v~~~~~~~ 640 (647)
|.|+.|+|.|+.+..
T Consensus 79 ~~g~~l~v~~a~~~~ 93 (102)
T 1x5s_A 79 VDGRQIRVDQAGKSS 93 (102)
T ss_dssp TTSCCCEEEEEECCC
T ss_pred ECCeEEEEEECCCCC
Confidence 999999999987654
No 199
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.49 E-value=7.8e-14 Score=117.30 Aligned_cols=76 Identities=17% Similarity=0.133 Sum_probs=69.8
Q ss_pred CCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccC-CeEEEEEe-cCCCceEEEEeCCHHHHHHHHHHhcCcccCCeE
Q 006380 553 PSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYG-RVKHIYVD-KRSAGFVYLRFESTEAAASAQRAMHMRWFARRL 630 (647)
Q Consensus 553 ~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G-~v~~v~l~-~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~ 630 (647)
....|+|.|| |..++ +++|+++|++|| .|..|.|. ..++|+|||+|.+.++|.+|++.|||..|.|+.
T Consensus 27 ~~~~l~VgnL--p~~~t--------e~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~ 96 (111)
T 2jvr_A 27 KRYRITMKNL--PEGCS--------WQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSV 96 (111)
T ss_dssp CCEEEEEECS--SCCCC--------HHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEE
T ss_pred CCCEEEEECC--CCCCC--------HHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 4467999999 98888 899999999999 89999985 568999999999999999999999999999999
Q ss_pred EEEEEcCh
Q 006380 631 ISAIFMKP 638 (647)
Q Consensus 631 l~v~~~~~ 638 (647)
|.|.++..
T Consensus 97 i~V~~a~~ 104 (111)
T 2jvr_A 97 ITVERDDN 104 (111)
T ss_dssp EEEEESCC
T ss_pred EEEEECCC
Confidence 99999764
No 200
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=8.3e-14 Score=116.57 Aligned_cols=80 Identities=21% Similarity=0.264 Sum_probs=72.5
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC---CCceEEEEeCCHHHHHHHHHHhcCcccC
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR---SAGFVYLRFESTEAAASAQRAMHMRWFA 627 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~---~~g~afV~F~~~~~A~~A~~~l~g~~~~ 627 (647)
..+.++|||.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+.++|.+|+..|||..|.
T Consensus 12 ~~~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 81 (103)
T 2d9p_A 12 RYQVVNLYVKNL--DDGID--------DERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 81 (103)
T ss_dssp CSSCCCEEEECC--CTTCC--------HHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 346678999999 88888 7999999999999999998754 5789999999999999999999999999
Q ss_pred CeEEEEEEcChhh
Q 006380 628 RRLISAIFMKPED 640 (647)
Q Consensus 628 Gr~l~v~~~~~~~ 640 (647)
|+.|.|.|+.+..
T Consensus 82 g~~l~V~~a~~~~ 94 (103)
T 2d9p_A 82 TKPLYVALAQRKE 94 (103)
T ss_dssp SSBCEEEECSSCC
T ss_pred CcEEEEEEecccc
Confidence 9999999988754
No 201
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.48 E-value=5.4e-14 Score=116.31 Aligned_cols=80 Identities=18% Similarity=0.400 Sum_probs=73.3
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEE
Q 006380 375 AIDRKLYVGNLHFNMTETQLR----KLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTL 450 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~----~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l 450 (647)
+++++|||+|||..+++++|+ ++|++||.|..|.|+. ++.++|||||+|.+.++|..|+..|+|. .|.|+.|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l 81 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGF-PFYDKPM 81 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTC-EETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCC-EECCcEE
Confidence 456899999999999999999 9999999999999874 5678899999999999999999999995 7999999
Q ss_pred EEEeecCC
Q 006380 451 KVSSVTDH 458 (647)
Q Consensus 451 ~v~~~~~~ 458 (647)
.|.|+.+.
T Consensus 82 ~v~~a~~~ 89 (97)
T 1nu4_A 82 RIQYAKTD 89 (97)
T ss_dssp EEEECSSC
T ss_pred EEEEccCC
Confidence 99999854
No 202
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.48 E-value=3.4e-14 Score=114.91 Aligned_cols=80 Identities=30% Similarity=0.485 Sum_probs=74.8
Q ss_pred CCCCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeec
Q 006380 216 PERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAE 295 (647)
Q Consensus 216 ~~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (647)
...+.++|||+|||+.+|+++|.++|++||.|..|.|+.++.+|.++|||
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~a------------------------------ 56 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFG------------------------------ 56 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEE------------------------------
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEE------------------------------
Confidence 34577999999999999999999999999999999999999999999999
Q ss_pred ccceEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCC
Q 006380 296 VGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKP 351 (647)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~ 351 (647)
||+|.+.++|..|+.+++..+.|+.|.|.+
T Consensus 57 --------------------------fV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 57 --------------------------FILFKDAASVEKVLDQKEHRLDGRVIDPKK 86 (87)
T ss_dssp --------------------------EEEESSTHHHHHHHHSSCEEETTEEEEEEE
T ss_pred --------------------------EEEECCHHHHHHHHHhCCCEECCEEEEEEe
Confidence 999999999999999999999999998764
No 203
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.2e-13 Score=112.51 Aligned_cols=76 Identities=21% Similarity=0.266 Sum_probs=70.7
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCCeEE
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLI 631 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l 631 (647)
.+.++|||.|| |..++ +++|.++|++||.|..|.|. +|+|||+|.+.++|.+|+..|||..|.|+.|
T Consensus 6 ~~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 72 (90)
T 2dnq_A 6 SGMVKLFIGNL--PREAT--------EQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNI 72 (90)
T ss_dssp SCCEEEEEESC--CSSCC--------HHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCCeEEEEeCC--CCCCC--------HHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEE
Confidence 45678999999 98888 79999999999999999998 7899999999999999999999999999999
Q ss_pred EEEEcChhh
Q 006380 632 SAIFMKPED 640 (647)
Q Consensus 632 ~v~~~~~~~ 640 (647)
+|.++.+..
T Consensus 73 ~v~~a~~~~ 81 (90)
T 2dnq_A 73 NVEASKNKS 81 (90)
T ss_dssp EEECSSCCC
T ss_pred EEEECCCCC
Confidence 999987654
No 204
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.48 E-value=2.5e-14 Score=113.94 Aligned_cols=72 Identities=26% Similarity=0.413 Sum_probs=66.7
Q ss_pred ceEEEcCCCCCC------CHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCe-EE
Q 006380 378 RKLYVGNLHFNM------TETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGR-TL 450 (647)
Q Consensus 378 ~~l~v~nLp~~~------~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~-~l 450 (647)
++|||+|||..+ ++++|+++|++||.|..|.|+. .+|.++|||||+|.+.++|.+|+..|||. .|.|+ +|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~-~~~g~~~l 78 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGY-KLDKQHTF 78 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSC-CCSSSSCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCc-ccCCceeE
Confidence 689999999999 7799999999999999999884 48999999999999999999999999996 79999 88
Q ss_pred EE
Q 006380 451 KV 452 (647)
Q Consensus 451 ~v 452 (647)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 205
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.48 E-value=1.1e-13 Score=118.59 Aligned_cols=80 Identities=18% Similarity=0.214 Sum_probs=71.6
Q ss_pred eEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCce-EEEEeCCHHHHHHHHHHhcCcccCC--eEEE
Q 006380 556 CLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGF-VYLRFESTEAAASAQRAMHMRWFAR--RLIS 632 (647)
Q Consensus 556 ~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~-afV~F~~~~~A~~A~~~l~g~~~~G--r~l~ 632 (647)
.|+|.|| +..++ +++|.++|++||.|..|.|....+|+ |||+|.++++|.+|++.|||..|.| ++|+
T Consensus 30 ~I~V~NL--~~~vt--------e~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~Lr 99 (130)
T 3zzy_A 30 RIIVENL--FYPVT--------LDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 99 (130)
T ss_dssp EEEEESC--CSCCC--------HHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred EEEECCC--CCCCC--------HHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEE
Confidence 4779999 87777 89999999999999999987767888 9999999999999999999999988 9999
Q ss_pred EEEcChhhhhhcc
Q 006380 633 AIFMKPEDYEAKF 645 (647)
Q Consensus 633 v~~~~~~~~~~~~ 645 (647)
|+|+.+....-++
T Consensus 100 I~~ak~~~l~v~~ 112 (130)
T 3zzy_A 100 IDFSKLTSLNVKY 112 (130)
T ss_dssp EEECSCSSCCCCC
T ss_pred EEecCCCceeEEe
Confidence 9999887655444
No 206
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.6e-13 Score=108.59 Aligned_cols=76 Identities=26% Similarity=0.321 Sum_probs=66.1
Q ss_pred CCce-EEEcCCCCCCCHHH----HHHhhccC-CCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeE
Q 006380 376 IDRK-LYVGNLHFNMTETQ----LRKLFEPF-GPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRT 449 (647)
Q Consensus 376 ~~~~-l~v~nLp~~~~e~~----l~~~f~~~-g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~ 449 (647)
++.+ |||+|||+.+++++ |+++|++| |.|..| ++ |+|||.|.+.++|..|++.|+|. .+.|++
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~-~l~gr~ 75 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENE-DVFGNR 75 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTC-CSSSSC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCC-ccCCce
Confidence 3455 99999999999988 55899999 599877 33 99999999999999999999995 899999
Q ss_pred EEEEeecCCCCCC
Q 006380 450 LKVSSVTDHVGTQ 462 (647)
Q Consensus 450 l~v~~~~~~~~~~ 462 (647)
|+|.|+++....-
T Consensus 76 i~v~~A~~~sd~~ 88 (96)
T 2diu_A 76 IIVSFTPKNRELC 88 (96)
T ss_dssp CEEESSCCSCCCC
T ss_pred EEEEecCCCccee
Confidence 9999999765543
No 207
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=7.3e-14 Score=115.77 Aligned_cols=79 Identities=22% Similarity=0.280 Sum_probs=71.2
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEec--------CCCceEEEEeCCHHHHHHHHHHhcC
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDK--------RSAGFVYLRFESTEAAASAQRAMHM 623 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~--------~~~g~afV~F~~~~~A~~A~~~l~g 623 (647)
.++++|||.|| |..++ +++|.++|++||.|..|.|.. .++|+|||+|.+.++|.+|+..|||
T Consensus 3 ~~~~~l~V~nL--p~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g 72 (98)
T 2cpf_A 3 SGSSGLFIKNL--NFSTT--------EETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQG 72 (98)
T ss_dssp CCCCCEEEESC--CTTCC--------HHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTT
T ss_pred CCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCC
Confidence 45678999999 98888 899999999999999998864 2368999999999999999999999
Q ss_pred cccCCeEEEEEEcChhh
Q 006380 624 RWFARRLISAIFMKPED 640 (647)
Q Consensus 624 ~~~~Gr~l~v~~~~~~~ 640 (647)
..|.|+.|.|.++.+..
T Consensus 73 ~~~~g~~l~V~~a~~~~ 89 (98)
T 2cpf_A 73 HTVDGHKLEVRISERAT 89 (98)
T ss_dssp CEETTEECEEECSSCSS
T ss_pred CeeCCeEEEEEEccCCC
Confidence 99999999999987754
No 208
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=1e-13 Score=115.14 Aligned_cols=79 Identities=19% Similarity=0.336 Sum_probs=72.5
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCCeE
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRL 630 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~ 630 (647)
..+.++|||.|| |..++ +++|.++|++||.|..|.|.. ++|+|||+|.+.++|.+|++.|||..|.|+.
T Consensus 12 ~~~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~i~~v~~~~-~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~ 80 (99)
T 2cpj_A 12 FTQRSRLFVGNL--PPDIT--------EEEMRKLFEKYGKAGEVFIHK-DKGFGFIRLETRTLAEIAKVELDNMPLRGKQ 80 (99)
T ss_dssp CCCTTEEEEESC--CTTCC--------HHHHHHHTSTTCCCSEEEEET-TTTEEEEECSSSHHHHHHHHHHTTCCBTTBC
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHhhcCCeEEEEEec-CCCEEEEEECCHHHHHHHHHHhCCCEeCCce
Confidence 356679999999 88887 799999999999999999985 4899999999999999999999999999999
Q ss_pred EEEEEcChhh
Q 006380 631 ISAIFMKPED 640 (647)
Q Consensus 631 l~v~~~~~~~ 640 (647)
|+|.|+.+..
T Consensus 81 l~v~~a~~~~ 90 (99)
T 2cpj_A 81 LRVRFACHSA 90 (99)
T ss_dssp CEEEESSCCS
T ss_pred EEEEEcCCCC
Confidence 9999988754
No 209
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=3.3e-13 Score=110.29 Aligned_cols=77 Identities=31% Similarity=0.495 Sum_probs=70.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEE
Q 006380 374 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 453 (647)
Q Consensus 374 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~ 453 (647)
....++|||+|||+.+++++|+++|++||.|..|.|++ +||||+|.+.++|.+|+..|++. .|.|+.|.|.
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~ 77 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNT-EFQGKRMHVQ 77 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTE-EETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCC-eeCCcEEEEE
Confidence 34468999999999999999999999999999999964 49999999999999999999995 7999999999
Q ss_pred eecCCC
Q 006380 454 SVTDHV 459 (647)
Q Consensus 454 ~~~~~~ 459 (647)
++.+..
T Consensus 78 ~a~~~~ 83 (92)
T 2dgt_A 78 LSTSRL 83 (92)
T ss_dssp ESSCCC
T ss_pred EccCCC
Confidence 998643
No 210
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=4.5e-14 Score=117.29 Aligned_cols=83 Identities=30% Similarity=0.512 Sum_probs=77.8
Q ss_pred CCCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecc
Q 006380 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEV 296 (647)
Q Consensus 217 ~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (647)
..+.++|||+|||..+|+++|.++|.+||.|..|.|+.++.++.++|||
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~a------------------------------- 55 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFG------------------------------- 55 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEE-------------------------------
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceE-------------------------------
Confidence 3567999999999999999999999999999999999999999999999
Q ss_pred cceEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCChhh
Q 006380 297 GMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAE 355 (647)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~~~ 355 (647)
||+|.+.++|..|+.+++..+.|+.|.|.++.+.
T Consensus 56 -------------------------fV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~~~ 89 (99)
T 2dgs_A 56 -------------------------FITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 89 (99)
T ss_dssp -------------------------EEEESSHHHHHHHHHHCCCBSSSCBCEEEECCCC
T ss_pred -------------------------EEEECCHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 9999999999999999999999999999887543
No 211
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=3e-14 Score=118.68 Aligned_cols=81 Identities=19% Similarity=0.313 Sum_probs=75.7
Q ss_pred CCCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecc
Q 006380 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEV 296 (647)
Q Consensus 217 ~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (647)
....++|||+|||+.+|+++|.++|++||.|.+|.|+.++. |.++|||
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~a------------------------------- 55 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSI------------------------------- 55 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEE-------------------------------
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEE-------------------------------
Confidence 34568999999999999999999999999999999999988 9999999
Q ss_pred cceEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCChh
Q 006380 297 GMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEA 354 (647)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~~ 354 (647)
||+|.+.++|..|+.++|..+.|+.|.|.+...
T Consensus 56 -------------------------FV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 56 -------------------------FVVFDSIESAKKFVETPGQKYKETDLLILFKDD 88 (103)
T ss_dssp -------------------------EEEESSHHHHHHHHTSSCCCCTTTTCEEEEHHH
T ss_pred -------------------------EEEECCHHHHHHHHHcCCCEECCEEEEEEEchH
Confidence 999999999999999999999999999987654
No 212
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.48 E-value=1.4e-13 Score=115.05 Aligned_cols=76 Identities=20% Similarity=0.414 Sum_probs=70.4
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCCeEE
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLI 631 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l 631 (647)
.++++|||.|| |..++ +++|.++|++||.|..|.|. +|+|||+|.+.++|.+|++.|||..|.|+.|
T Consensus 9 ~~~~~l~V~nl--~~~~t--------~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 75 (103)
T 2dgu_A 9 AKVKVLFVRNL--ANTVT--------EEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGENI 75 (103)
T ss_dssp CCCCCEEEECC--CTTCC--------HHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEE
Confidence 45678999999 88887 89999999999999999998 6799999999999999999999999999999
Q ss_pred EEEEcChhh
Q 006380 632 SAIFMKPED 640 (647)
Q Consensus 632 ~v~~~~~~~ 640 (647)
.|.|+.+..
T Consensus 76 ~v~~a~~~~ 84 (103)
T 2dgu_A 76 EIVFAKPPD 84 (103)
T ss_dssp EEEECCCCC
T ss_pred EEEEcCCCc
Confidence 999987754
No 213
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=9.6e-14 Score=116.89 Aligned_cols=79 Identities=16% Similarity=0.283 Sum_probs=71.2
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCHHHHHHHHHHhcCcc
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAMHMRW 625 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~~~A~~A~~~l~g~~ 625 (647)
..++++|||.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+.++|.+|+..|||..
T Consensus 20 ~~~~~~l~V~nl--p~~~t--------~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 89 (106)
T 1p27_B 20 SVEGWILFVTGV--HEEAT--------EEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQD 89 (106)
T ss_dssp BTTBEEEEEECC--CTTCC--------HHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCB
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCE
Confidence 355678999999 88887 7999999999999999998644 37999999999999999999999999
Q ss_pred cCCeEEEEEEcChh
Q 006380 626 FARRLISAIFMKPE 639 (647)
Q Consensus 626 ~~Gr~l~v~~~~~~ 639 (647)
|.|+.|.|.|+.+.
T Consensus 90 ~~g~~l~V~~a~~~ 103 (106)
T 1p27_B 90 LMGQPISVDWCFVR 103 (106)
T ss_dssp SSSSBCEEEESEES
T ss_pred ECCcEEEEEeecCC
Confidence 99999999998654
No 214
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.2e-13 Score=116.84 Aligned_cols=79 Identities=16% Similarity=0.239 Sum_probs=72.8
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCCeE
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRL 630 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~ 630 (647)
..+.++|||.|| |..++ +++|.++|++||.|..|.|..+ +|+|||+|.+.++|.+|+..|||..|.|+.
T Consensus 22 ~~~~~~l~V~nl--~~~~t--------~~~l~~~F~~~G~i~~v~i~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 90 (109)
T 1x4g_A 22 SPKNCTVYCGGI--ASGLT--------DQLMRQTFSPFGQIMEIRVFPE-KGYSFVRFSTHESAAHAIVSVNGTTIEGHV 90 (109)
T ss_dssp CSSCCEEEEECC--SSCCC--------HHHHHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCcEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 355678999999 88887 8999999999999999999865 899999999999999999999999999999
Q ss_pred EEEEEcChhh
Q 006380 631 ISAIFMKPED 640 (647)
Q Consensus 631 l~v~~~~~~~ 640 (647)
|+|.|+.+..
T Consensus 91 l~v~~a~~~~ 100 (109)
T 1x4g_A 91 VKCYWGKESP 100 (109)
T ss_dssp CEEECCCCCC
T ss_pred EEEEecCCCC
Confidence 9999988764
No 215
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.48 E-value=1e-13 Score=120.66 Aligned_cols=80 Identities=16% Similarity=0.280 Sum_probs=72.2
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCHHHHHHHHHHhcCcc
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAMHMRW 625 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~~~A~~A~~~l~g~~ 625 (647)
..++.+|||.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+.++|.+|++.|||..
T Consensus 19 ~~~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 88 (126)
T 3ex7_B 19 SVEGWILFVTGV--HEEAT--------EEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQD 88 (126)
T ss_dssp CSSSEEEEEESC--CTTCC--------HHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCB
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCe
Confidence 456678999999 88887 8999999999999999999655 38999999999999999999999999
Q ss_pred cCCeEEEEEEcChhh
Q 006380 626 FARRLISAIFMKPED 640 (647)
Q Consensus 626 ~~Gr~l~v~~~~~~~ 640 (647)
|.|+.|.|.|+.+..
T Consensus 89 ~~g~~l~v~~a~~~~ 103 (126)
T 3ex7_B 89 LMGQPISVDWCFVRG 103 (126)
T ss_dssp SSSSBCEEEESEESS
T ss_pred eCCeEEEEEEecCCC
Confidence 999999999986543
No 216
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.48 E-value=2.8e-14 Score=116.11 Aligned_cols=79 Identities=20% Similarity=0.287 Sum_probs=71.0
Q ss_pred ceEEeccCCccCCHHHHHHHHHhcC--CceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecccc
Q 006380 221 RTVFAYQMPLKATERDVYEFFSKAG--KVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVGM 298 (647)
Q Consensus 221 ~~v~i~nlp~~~te~~l~~~f~~~G--~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (647)
.+|||+|||+.+|+++|.++|++|| .|.+|.++.++.+|.++|||
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~a--------------------------------- 48 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFA--------------------------------- 48 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEE---------------------------------
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEE---------------------------------
Confidence 4799999999999999999999999 99999999999999999999
Q ss_pred eEeecCCccccccCCcccccceeeEEecCCcCHHHHH-HhcCccccCccccCCCChhh
Q 006380 299 VFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAI-ALSGQLLLGQPVMVKPSEAE 355 (647)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al-~l~g~~~~g~~l~v~~~~~~ 355 (647)
||+|.+.++|..|+ .|||..+.|+.|.|.++.+.
T Consensus 49 -----------------------fV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~ 83 (90)
T 3p5t_L 49 -----------------------LVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKL 83 (90)
T ss_dssp -----------------------EECC-CHHHHHHHHHHGGGSCSSSCCCEECCC---
T ss_pred -----------------------EEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCC
Confidence 99999999999999 59999999999999987654
No 217
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=3.6e-14 Score=123.12 Aligned_cols=80 Identities=23% Similarity=0.277 Sum_probs=72.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEee
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 455 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~ 455 (647)
...+|||+|||+.+++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|.+||. |++. .|+|+.|.|.++
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~-~~~gr~i~V~~a 101 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQ-YMGNRFIQVHPI 101 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSB-CSTTSCBEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCC-eECCcEEEEEEC
Confidence 35899999999999999999999999999885555655699999999999999999999998 9995 799999999998
Q ss_pred cC
Q 006380 456 TD 457 (647)
Q Consensus 456 ~~ 457 (647)
..
T Consensus 102 ~~ 103 (124)
T 1wel_A 102 TK 103 (124)
T ss_dssp CH
T ss_pred CH
Confidence 73
No 218
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=9.6e-14 Score=116.18 Aligned_cols=80 Identities=21% Similarity=0.404 Sum_probs=72.4
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCHHHHHHHHHHhcCcc
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAMHMRW 625 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~~~A~~A~~~l~g~~ 625 (647)
..++++|||.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+.++|.+|+..|||..
T Consensus 12 ~~~~~~l~V~nl--p~~~t--------~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 81 (103)
T 2cq0_A 12 ADDNATIRVTNL--SEDTR--------ETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFG 81 (103)
T ss_dssp CSSSEEEEEESC--CTTCC--------HHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCE
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCe
Confidence 356688999999 88887 8999999999999999998654 37899999999999999999999999
Q ss_pred cCCeEEEEEEcChhh
Q 006380 626 FARRLISAIFMKPED 640 (647)
Q Consensus 626 ~~Gr~l~v~~~~~~~ 640 (647)
|.|+.|+|.|+.+..
T Consensus 82 ~~g~~l~v~~a~~~~ 96 (103)
T 2cq0_A 82 YDHLILNVEWAKPST 96 (103)
T ss_dssp ETTEECEEEESSCCC
T ss_pred eCCcEEEEEECCCCC
Confidence 999999999988754
No 219
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.48 E-value=1.3e-13 Score=116.32 Aligned_cols=76 Identities=20% Similarity=0.238 Sum_probs=69.9
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC----CCceEEEEeCCHHHHHHHHHHhcCcccC
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR----SAGFVYLRFESTEAAASAQRAMHMRWFA 627 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~----~~g~afV~F~~~~~A~~A~~~l~g~~~~ 627 (647)
.+..+|+|.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+.++|.+|++.|||..|.
T Consensus 27 ~~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 96 (107)
T 3ulh_A 27 ETGGKLLVSNL--DFGVS--------DADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLD 96 (107)
T ss_dssp CCSEEEEEESC--CTTCC--------HHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 56678999999 98888 7999999999999999988654 4789999999999999999999999999
Q ss_pred CeEEEEEEcC
Q 006380 628 RRLISAIFMK 637 (647)
Q Consensus 628 Gr~l~v~~~~ 637 (647)
|+.|+|.|++
T Consensus 97 g~~l~V~~a~ 106 (107)
T 3ulh_A 97 GRPMNIQLVT 106 (107)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEeC
Confidence 9999999975
No 220
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.48 E-value=1.6e-13 Score=113.88 Aligned_cols=77 Identities=17% Similarity=0.192 Sum_probs=69.5
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEE--------EEEecC-----CCceEEEEeCCHHHHHHH
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKH--------IYVDKR-----SAGFVYLRFESTEAAASA 617 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~--------v~l~~~-----~~g~afV~F~~~~~A~~A 617 (647)
..+..+|||.|| |..++ +++|.++|++||.|.. |.|..+ ++|+|||+|.+.++|.+|
T Consensus 10 ~~~~~~l~V~nL--p~~~t--------~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~A 79 (99)
T 2la6_A 10 HSDNNTIFVQGL--GENVT--------IESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAA 79 (99)
T ss_dssp CCCCSEEEEECC--CSSCC--------HHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHH
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHH
Confidence 356678999999 98888 8999999999999999 888644 378999999999999999
Q ss_pred HHHhcCcccCCeEEEEEEcC
Q 006380 618 QRAMHMRWFARRLISAIFMK 637 (647)
Q Consensus 618 ~~~l~g~~~~Gr~l~v~~~~ 637 (647)
++.|||..|.|+.|+|.++.
T Consensus 80 i~~l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 80 IDWFDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp HHHHTTCBSSSSBCEEEECC
T ss_pred HHHhCCCEeCCcEEEEEecC
Confidence 99999999999999999974
No 221
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.5e-13 Score=110.56 Aligned_cols=75 Identities=15% Similarity=0.238 Sum_probs=69.1
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHh-cCcccCCe
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAM-HMRWFARR 629 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l-~g~~~~Gr 629 (647)
..+.++|+|.|| |..++ +++|.++|++||.|..|.+.. ++|+|||+|.+.++|.+|+..| +|..|.|+
T Consensus 9 ~~~~~~l~V~~l--~~~~t--------~~~l~~~f~~~G~i~~~~~~~-~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~ 77 (85)
T 2ytc_A 9 DKTITTLYVGGL--GDTIT--------ETDLRNHFYQFGEIRTITVVQ-RQQCAFIQFATRQAAEVAAEKSFNKLIVNGR 77 (85)
T ss_dssp CSSCCCEEEECC--TTTSC--------HHHHHHHHHTTSCEEEEEEEG-GGTEEEEEESSHHHHHHHHHTTTTTCEETTE
T ss_pred CCCccEEEEcCC--CCCCC--------HHHHHHHHHhCCCEeEEEEEC-CCCEEEEEECCHHHHHHHHHHhcCCeeECCC
Confidence 355678999999 88887 799999999999999999986 5899999999999999999999 99999999
Q ss_pred EEEEEEc
Q 006380 630 LISAIFM 636 (647)
Q Consensus 630 ~l~v~~~ 636 (647)
.|+|.|+
T Consensus 78 ~l~v~~a 84 (85)
T 2ytc_A 78 RLNVKWG 84 (85)
T ss_dssp ECCEEEC
T ss_pred EEEEEec
Confidence 9999986
No 222
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.5e-13 Score=111.82 Aligned_cols=75 Identities=15% Similarity=0.169 Sum_probs=69.8
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCCeEE
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLI 631 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l 631 (647)
.+.++|||.|| |..++ +++|.++|++||.|..|.|. +++|||+|.+.++|.+|+..|||..|.|+.|
T Consensus 7 ~~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 73 (90)
T 2dnp_A 7 GNTWKIFVGNV--SAACT--------SQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRI 73 (90)
T ss_dssp CCSCCEEEESC--CTTCC--------HHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEeCC--CCCCC--------HHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 55678999999 88887 89999999999999999998 5699999999999999999999999999999
Q ss_pred EEEEcChh
Q 006380 632 SAIFMKPE 639 (647)
Q Consensus 632 ~v~~~~~~ 639 (647)
+|.++.+.
T Consensus 74 ~v~~a~~~ 81 (90)
T 2dnp_A 74 NVELSTKG 81 (90)
T ss_dssp EEEESCCC
T ss_pred EEEECCCC
Confidence 99998775
No 223
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.47 E-value=1.5e-13 Score=116.58 Aligned_cols=79 Identities=16% Similarity=0.305 Sum_probs=71.5
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCHHHHHHHHHHhcCcc
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAMHMRW 625 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~~~A~~A~~~l~g~~ 625 (647)
..++++|||.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+.++|.+|+..|||..
T Consensus 23 ~~~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~ 92 (110)
T 1oo0_B 23 SVEGWILFVTSI--HEEAQ--------EDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAE 92 (110)
T ss_dssp BTTBEEEEEESC--CTTCC--------HHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCE
Confidence 356678999999 88887 7999999999999999999654 37999999999999999999999999
Q ss_pred cCCeEEEEEEcChh
Q 006380 626 FARRLISAIFMKPE 639 (647)
Q Consensus 626 ~~Gr~l~v~~~~~~ 639 (647)
|.|+.|+|.|+.+.
T Consensus 93 ~~g~~l~V~~a~~~ 106 (110)
T 1oo0_B 93 IMGQTIQVDWCFVK 106 (110)
T ss_dssp ETTEECEEEESEES
T ss_pred ECCcEEEEEEcccC
Confidence 99999999998654
No 224
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.47 E-value=2.1e-13 Score=116.59 Aligned_cols=79 Identities=19% Similarity=0.333 Sum_probs=72.3
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC--CCceEEEEeCCHHHHHHHHHHhcCcccCCe
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR--SAGFVYLRFESTEAAASAQRAMHMRWFARR 629 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~--~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr 629 (647)
.++++|||.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+.++|.+|+..|||..|.|+
T Consensus 6 ~~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 75 (115)
T 3lqv_A 6 EVNRILYIRNL--PYKIT--------AEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNR 75 (115)
T ss_dssp TCCSEEEEESC--CTTCC--------HHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSC
T ss_pred CCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 45679999999 98888 7999999999999999998644 579999999999999999999999999999
Q ss_pred EEEEEEcChhh
Q 006380 630 LISAIFMKPED 640 (647)
Q Consensus 630 ~l~v~~~~~~~ 640 (647)
.|.|.|+.+..
T Consensus 76 ~l~v~~a~~~~ 86 (115)
T 3lqv_A 76 YLVVLYYNANR 86 (115)
T ss_dssp BCEEEECCHHH
T ss_pred EEEEEEecCCh
Confidence 99999998754
No 225
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.47 E-value=3e-14 Score=116.46 Aligned_cols=80 Identities=15% Similarity=0.317 Sum_probs=72.7
Q ss_pred CCCceEEeccCCccCCHHHHHHHHHhcCC--ceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeec
Q 006380 218 RDQRTVFAYQMPLKATERDVYEFFSKAGK--VRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAE 295 (647)
Q Consensus 218 ~~~~~v~i~nlp~~~te~~l~~~f~~~G~--v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (647)
..-.+|||+|||+.+|+++|.++|++||. |.+|++++|+.||.++|||
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~a------------------------------ 56 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFA------------------------------ 56 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEE------------------------------
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEe------------------------------
Confidence 35579999999999999999999999995 7799999999999999999
Q ss_pred ccceEeecCCccccccCCcccccceeeEEecCCcCHHHHH-HhcCc----cccCccccCCCCh
Q 006380 296 VGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAI-ALSGQ----LLLGQPVMVKPSE 353 (647)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al-~l~g~----~~~g~~l~v~~~~ 353 (647)
||+|.+.++|..|+ .|||. .+.|+.|.|.++.
T Consensus 57 --------------------------FV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Ak 93 (95)
T 2lkz_A 57 --------------------------FVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAK 93 (95)
T ss_dssp --------------------------EEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECC
T ss_pred --------------------------EEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEcc
Confidence 99999999999999 48886 4889999998764
No 226
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.47 E-value=3.3e-13 Score=115.96 Aligned_cols=76 Identities=20% Similarity=0.250 Sum_probs=69.7
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCHHHHHHHHHHhcCcc
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAMHMRW 625 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~~~A~~A~~~l~g~~ 625 (647)
..+.++|||.|| |..++ +++|+++|++||.|..|.|..+ ++|+|||+|.+.++|.+|++.|||..
T Consensus 37 ~~~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 106 (118)
T 2khc_A 37 GPEGCNLFIYHL--PQEFT--------DTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQ 106 (118)
T ss_dssp CCCSEEEEEECS--CTTCC--------HHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCE
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCE
Confidence 456788999999 88887 8999999999999999999644 48999999999999999999999999
Q ss_pred cCCeEEEEEEc
Q 006380 626 FARRLISAIFM 636 (647)
Q Consensus 626 ~~Gr~l~v~~~ 636 (647)
|.|+.|+|.|+
T Consensus 107 ~~g~~l~V~~a 117 (118)
T 2khc_A 107 VGTKRLKVQLK 117 (118)
T ss_dssp ETTEECCEEEC
T ss_pred ECCEEEEEEec
Confidence 99999999986
No 227
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.47 E-value=1.4e-13 Score=113.33 Aligned_cols=77 Identities=14% Similarity=0.123 Sum_probs=70.0
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC----CCceEEEEeCCHHHHHHHHHHhcCccc
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR----SAGFVYLRFESTEAAASAQRAMHMRWF 626 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~----~~g~afV~F~~~~~A~~A~~~l~g~~~ 626 (647)
..+.++|+|.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+.++|.+|++.|||..|
T Consensus 13 ~~~~~~l~v~nl--p~~~~--------~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 82 (95)
T 2ywk_A 13 EEADRTVFVGNL--EARVR--------EEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRL 82 (95)
T ss_dssp TTGGGEEEEECC--CTTCC--------HHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEEECC--CCCCC--------HHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 355678999999 88887 7999999999999999999754 378999999999999999999999999
Q ss_pred CCeEEEEEEcC
Q 006380 627 ARRLISAIFMK 637 (647)
Q Consensus 627 ~Gr~l~v~~~~ 637 (647)
.|+.|+|.|+.
T Consensus 83 ~g~~l~V~~a~ 93 (95)
T 2ywk_A 83 YGRPINVSGPS 93 (95)
T ss_dssp TTEECEEECCC
T ss_pred CCCEEEEEEcC
Confidence 99999999875
No 228
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=1.7e-13 Score=116.36 Aligned_cols=82 Identities=17% Similarity=0.211 Sum_probs=73.7
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCHHHHHHHHHHhc---
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAMH--- 622 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~~~A~~A~~~l~--- 622 (647)
..+.++|||.|| |..++ +++|.++|.+||.|..|.|..+ ++|+|||+|.+.++|.+|+..||
T Consensus 12 ~~~~~~l~V~nL--p~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~ 81 (111)
T 1x4h_A 12 VTEGKTVFIRNL--SFDSE--------EEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEA 81 (111)
T ss_dssp CCCCCCEEEESC--CTTCC--------HHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTT
T ss_pred CCCCCEEEEECC--CCCCC--------HHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhcccc
Confidence 356678999999 98888 8999999999999999999744 58999999999999999999999
Q ss_pred ---CcccCCeEEEEEEcChhhhh
Q 006380 623 ---MRWFARRLISAIFMKPEDYE 642 (647)
Q Consensus 623 ---g~~~~Gr~l~v~~~~~~~~~ 642 (647)
|..|.|+.|+|.|+.+..-.
T Consensus 82 ~~~~~~~~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 82 EGGGLKLDGRQLKVDLAVTRDEA 104 (111)
T ss_dssp TTCCEESSSCEEEEECCCCCCCC
T ss_pred ccCCcEEcCEEEEEEECCCCccC
Confidence 99999999999999876543
No 229
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.2e-13 Score=109.20 Aligned_cols=78 Identities=22% Similarity=0.240 Sum_probs=65.7
Q ss_pred CCCce-EEecCcCCCCCCCCchhhhhhHHHHHHHhhcc-CCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCCe
Q 006380 552 SPSEC-LLLKNMFDPAMETDPDFDLEIQGDVEEECSKY-GRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR 629 (647)
Q Consensus 552 ~~~~~-l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~-G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr 629 (647)
+|+.+ |||.|| |..++. .+|..+|.++|++| |.|..|. .|+|||.|.++++|.+|++.|||..|.|+
T Consensus 6 ~p~~T~lYV~NL--~~~~~~----~~lk~~L~~lF~~yGG~Vl~Vt-----gG~AfV~F~~~esA~~A~~~l~G~~l~gr 74 (96)
T 2diu_A 6 SGCHTLLYVYNL--PANKDG----KSVSNRLRRLSDNCGGKVLSIT-----GCSAILRFINQDSAERAQKRMENEDVFGN 74 (96)
T ss_dssp CCSSEEEEEESC--CTTSCH----HHHHHHHHHHHHTTTCCEEECC-----TTCEEEEESSHHHHHHHHHHHTTCCSSSS
T ss_pred CCcceEEEEeCC--CCcCCH----HHHHHHHHHHHHHcCCeeEEEe-----cCEEEEEECCHHHHHHHHHHhcCCccCCc
Confidence 45566 999999 988862 22244588999999 5999992 29999999999999999999999999999
Q ss_pred EEEEEEcChhh
Q 006380 630 LISAIFMKPED 640 (647)
Q Consensus 630 ~l~v~~~~~~~ 640 (647)
+|+|+|+....
T Consensus 75 ~i~v~~A~~~s 85 (96)
T 2diu_A 75 RIIVSFTPKNR 85 (96)
T ss_dssp CCEEESSCCSC
T ss_pred eEEEEecCCCc
Confidence 99999988654
No 230
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.47 E-value=6.5e-14 Score=116.78 Aligned_cols=76 Identities=17% Similarity=0.237 Sum_probs=70.1
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCCeEE
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLI 631 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l 631 (647)
...++|||.|| |..++ +++|.++|++||.|..|.+. .++|+|||+|.+.++|.+|+..|||..|.|+.|
T Consensus 25 ~~~~~l~V~nl--p~~~~--------~~~l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 93 (101)
T 2la4_A 25 PRVTTAYIGNI--PHFAT--------EADLIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNL 93 (101)
T ss_dssp SSCCEEEEESC--CTTCC--------HHHHHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEcCC--CcccC--------HHHHHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 44578999999 88887 79999999999999999998 468999999999999999999999999999999
Q ss_pred EEEEcCh
Q 006380 632 SAIFMKP 638 (647)
Q Consensus 632 ~v~~~~~ 638 (647)
+|.|+.+
T Consensus 94 ~V~~a~~ 100 (101)
T 2la4_A 94 RTGWGKE 100 (101)
T ss_dssp CCCBCCC
T ss_pred EEEeccC
Confidence 9999865
No 231
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.3e-13 Score=115.51 Aligned_cols=77 Identities=12% Similarity=0.200 Sum_probs=69.1
Q ss_pred CCCCceEEe--cCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCccc--
Q 006380 551 GSPSECLLL--KNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWF-- 626 (647)
Q Consensus 551 ~~~~~~l~v--~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~-- 626 (647)
..|+++||| .|| +..++ +++|+++|++||.|..|.|+. ++|||||+|.+.++|.+|++.|||..|
T Consensus 22 ~~pt~~L~V~Ng~L--~~~~t--------e~~L~~~F~~fG~v~~v~i~~-~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~ 90 (114)
T 2cq2_A 22 SYATQSLVVANGGL--GNGVS--------RNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVD 90 (114)
T ss_dssp SSCCSEEEEETCTG--GGTCC--------HHHHHHHHHHHSCEEEEECCT-TCSCEEEEESSHHHHHHHHHHTTTCEEEC
T ss_pred CCCCCEEEEECCCC--CCCCC--------HHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEEcc
Confidence 356788999 669 88777 799999999999999998874 689999999999999999999999988
Q ss_pred ---CCeEEEEEEcCh
Q 006380 627 ---ARRLISAIFMKP 638 (647)
Q Consensus 627 ---~Gr~l~v~~~~~ 638 (647)
.|++|.|.|+..
T Consensus 91 ~lg~g~~l~v~~a~~ 105 (114)
T 2cq2_A 91 DLGQKITLYLNFVEK 105 (114)
T ss_dssp TTSCEEECEEEEESC
T ss_pred ccCCCcEEEEEeccc
Confidence 799999999864
No 232
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.47 E-value=2e-14 Score=126.14 Aligned_cols=79 Identities=20% Similarity=0.272 Sum_probs=72.6
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
..+|||+|||+.+++++|+++|++|| |..|.|+.++ ++.++|||||+|.+.++|.+|| .+++. .|.|+.|.|.++.
T Consensus 46 ~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~-~g~srGfaFV~F~~~e~A~~Al-~~~g~-~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 46 GHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP-DGRVTGEADVEFATHEEAVAAM-SKDRA-NMQHRYIELFLNS 121 (139)
T ss_dssp CCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS-SSCSSCCCEEECSHHHHHHHHT-TCCSC-SSSSCCCCCEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC-CCCCceEEEEEeCCHHHHHHHH-hhCCC-EECCEEEEEEECC
Confidence 48999999999999999999999999 6799999998 5999999999999999999999 88985 7999999999987
Q ss_pred CCC
Q 006380 457 DHV 459 (647)
Q Consensus 457 ~~~ 459 (647)
...
T Consensus 122 ~~~ 124 (139)
T 2hgn_A 122 TTG 124 (139)
T ss_dssp CSC
T ss_pred CCC
Confidence 543
No 233
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.47 E-value=5e-14 Score=118.67 Aligned_cols=79 Identities=11% Similarity=0.140 Sum_probs=73.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccCCC---eeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEE
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEPFGP---VELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 452 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~~g~---i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v 452 (647)
...+|||+|||+.+++++|+++|+.||. |..|.|+.+.. |.++|||||+|.+.++|.+||. +++. .|+|+.|.|
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~-~~~gr~i~V 86 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRM-YMGQRYVEV 86 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTC-CSSSSCCCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcc-eeCCeEEEE
Confidence 3589999999999999999999999988 89999999985 9999999999999999999997 9996 699999999
Q ss_pred EeecC
Q 006380 453 SSVTD 457 (647)
Q Consensus 453 ~~~~~ 457 (647)
.++..
T Consensus 87 ~~a~~ 91 (107)
T 2lmi_A 87 YEINN 91 (107)
T ss_dssp EECCH
T ss_pred EECCH
Confidence 99863
No 234
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.47 E-value=1.1e-13 Score=113.12 Aligned_cols=78 Identities=23% Similarity=0.227 Sum_probs=71.1
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC---CCceEEEEeCCHHHHHHHHHHhcCcccCC
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR---SAGFVYLRFESTEAAASAQRAMHMRWFAR 628 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~---~~g~afV~F~~~~~A~~A~~~l~g~~~~G 628 (647)
.+..+|+|.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+.++|.+|+..|||..|.|
T Consensus 6 ~~~~~l~V~nl--p~~~t--------~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g 75 (92)
T 2dgv_A 6 SGACQIFVRNL--PFDFT--------WKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSG 75 (92)
T ss_dssp SSCCEEEECSC--CTTCC--------HHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTT
T ss_pred CCCcEEEEeCC--CCCCC--------HHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45678999999 98887 7999999999999999988753 47999999999999999999999999999
Q ss_pred eEEEEEEcChh
Q 006380 629 RLISAIFMKPE 639 (647)
Q Consensus 629 r~l~v~~~~~~ 639 (647)
+.|+|.++.+.
T Consensus 76 ~~l~v~~a~~~ 86 (92)
T 2dgv_A 76 REIDVRIDRNA 86 (92)
T ss_dssp BCCCCEECSCC
T ss_pred cEEEEEEcCCC
Confidence 99999998764
No 235
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.46 E-value=2e-13 Score=114.97 Aligned_cols=76 Identities=29% Similarity=0.569 Sum_probs=70.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEE
Q 006380 374 GAIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 453 (647)
Q Consensus 374 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~ 453 (647)
....++|||+|||..+++++|+++|+.||.|..|.|+ +|||||+|.+.++|.+|+..|+|. .|.|+.|.|.
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V~ 98 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGK-SFANQPLEVV 98 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTC-EETTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCC-EECCeEEEEE
Confidence 3445899999999999999999999999999999996 689999999999999999999996 7999999999
Q ss_pred eecCC
Q 006380 454 SVTDH 458 (647)
Q Consensus 454 ~~~~~ 458 (647)
|+.+.
T Consensus 99 ~a~~~ 103 (108)
T 2jvo_A 99 YSKLP 103 (108)
T ss_dssp SCSCC
T ss_pred EecCC
Confidence 99754
No 236
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.46 E-value=2.6e-13 Score=115.04 Aligned_cols=75 Identities=23% Similarity=0.320 Sum_probs=69.1
Q ss_pred CCCceEEecCcCCCCC-CCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCCeE
Q 006380 552 SPSECLLLKNMFDPAM-ETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRL 630 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~-~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~ 630 (647)
.++++|||.|| |.. ++ +++|.++|++||.|..|.| ++|+|||+|.+.++|.+|+..|||..|.|+.
T Consensus 25 ~~~~~l~V~nl--~~~~~t--------~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 91 (110)
T 1wf1_A 25 SINSRVFIGNL--NTALVK--------KSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLGENGRVLAGQT 91 (110)
T ss_dssp TCSSEEEECSC--CCSSCC--------HHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEeCC--CcccCC--------HHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 44578999999 887 77 7999999999999999999 5899999999999999999999999999999
Q ss_pred EEEEEcChh
Q 006380 631 ISAIFMKPE 639 (647)
Q Consensus 631 l~v~~~~~~ 639 (647)
|+|.|+.+.
T Consensus 92 l~V~~a~~~ 100 (110)
T 1wf1_A 92 LDINMAGEP 100 (110)
T ss_dssp CCEEESCCC
T ss_pred EEEEECCCC
Confidence 999998753
No 237
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=1.2e-13 Score=117.16 Aligned_cols=79 Identities=13% Similarity=0.224 Sum_probs=71.1
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHH---HHhhccCCeEEEEEecC--------CCceEEEEeCCHHHHHHHHHH
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVE---EECSKYGRVKHIYVDKR--------SAGFVYLRFESTEAAASAQRA 620 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~---~~f~~~G~v~~v~l~~~--------~~g~afV~F~~~~~A~~A~~~ 620 (647)
.+.++|||.|| |..++ +++|. ++|++||.|..|.|..+ ++|+|||+|.+.++|.+|++.
T Consensus 13 ~~~~~l~V~nL--p~~~~--------~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~ 82 (111)
T 2cpi_A 13 VQKNLVFVVGL--SQRLA--------DPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQC 82 (111)
T ss_dssp CCSSCEEEEEE--CTTTC--------CHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHH
T ss_pred cCCCEEEEECC--CCCCC--------HHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHH
Confidence 45678999999 88888 58898 99999999999999754 348999999999999999999
Q ss_pred hcCcccCCeEEEEEEcChhh
Q 006380 621 MHMRWFARRLISAIFMKPED 640 (647)
Q Consensus 621 l~g~~~~Gr~l~v~~~~~~~ 640 (647)
|||..|.|++|+|.|+.+..
T Consensus 83 lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 83 VNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp HTTEEETTEEEEEESCCCCS
T ss_pred hCCCEECCEEEEEEeccccc
Confidence 99999999999999998764
No 238
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.46 E-value=1.2e-13 Score=114.12 Aligned_cols=80 Identities=18% Similarity=0.367 Sum_probs=71.3
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHH----HHhhccCCeEEEEEec--CCCceEEEEeCCHHHHHHHHHHhcCc
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVE----EECSKYGRVKHIYVDK--RSAGFVYLRFESTEAAASAQRAMHMR 624 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~----~~f~~~G~v~~v~l~~--~~~g~afV~F~~~~~A~~A~~~l~g~ 624 (647)
.+++++|+|.|| |..++ +++|. ++|++||.|..|.+.. .++|+|||+|.+.++|.+|+..|||.
T Consensus 5 ~~~~~~l~V~nL--p~~~~--------~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 74 (97)
T 1nu4_A 5 TRPNHTIYINNL--NEKIK--------KDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGF 74 (97)
T ss_dssp -CCCSEEEEESC--CTTSC--------HHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCC
Confidence 456789999999 88887 67777 9999999999999874 35799999999999999999999999
Q ss_pred ccCCeEEEEEEcChhh
Q 006380 625 WFARRLISAIFMKPED 640 (647)
Q Consensus 625 ~~~Gr~l~v~~~~~~~ 640 (647)
.|.|+.|.|.|+.+..
T Consensus 75 ~~~g~~l~v~~a~~~~ 90 (97)
T 1nu4_A 75 PFYDKPMRIQYAKTDS 90 (97)
T ss_dssp EETTEECEEEECSSCC
T ss_pred EECCcEEEEEEccCCC
Confidence 9999999999998754
No 239
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.46 E-value=3e-14 Score=111.69 Aligned_cols=75 Identities=28% Similarity=0.495 Sum_probs=70.0
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEee
Q 006380 379 KLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 455 (647)
Q Consensus 379 ~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~ 455 (647)
+|||+|||+.+++++|+++|+.||.|..|.++.++.++.++|||||+|.+.++|.+|+. +++. .|.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~-~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYH-NVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSC-CBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCC-eECCEEEEEEEC
Confidence 58999999999999999999999999999999998889999999999999999999996 5774 799999999875
No 240
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=2.1e-13 Score=112.72 Aligned_cols=78 Identities=12% Similarity=0.166 Sum_probs=68.8
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCCeEE
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLI 631 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l 631 (647)
..+++|||.|| |..++ +++|.++|++||.|....+...++|+|||+|.+.++|.+|++.|||..|.|+.|
T Consensus 17 ~~~~~l~V~nL--~~~~t--------~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 86 (97)
T 2e5j_A 17 PLAADVYVGNL--PRDAR--------VSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTL 86 (97)
T ss_dssp CCCCEEEEECC--CTTCC--------HHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCEEEEeCC--CCcCc--------HHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 45678999999 98888 799999999999997323344579999999999999999999999999999999
Q ss_pred EEEEcChh
Q 006380 632 SAIFMKPE 639 (647)
Q Consensus 632 ~v~~~~~~ 639 (647)
.|.++.+.
T Consensus 87 ~V~~a~~~ 94 (97)
T 2e5j_A 87 RVALARQQ 94 (97)
T ss_dssp EEEECCCC
T ss_pred EEEEcCCC
Confidence 99998764
No 241
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.3e-13 Score=115.83 Aligned_cols=85 Identities=22% Similarity=0.404 Sum_probs=78.8
Q ss_pred CCCCCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeee
Q 006380 215 DPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVA 294 (647)
Q Consensus 215 ~~~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (647)
....+.++|||+|||+.+|+++|.++|.+||.|..|.|+.++.++.++|||
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~a----------------------------- 61 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFG----------------------------- 61 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEE-----------------------------
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEE-----------------------------
Confidence 345578999999999999999999999999999999999999999999999
Q ss_pred cccceEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCChhh
Q 006380 295 EVGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAE 355 (647)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~~~ 355 (647)
||+|.+.++|..|+..++..+.|+.|.|.++.+.
T Consensus 62 ---------------------------fV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a~~~ 95 (105)
T 2dh8_A 62 ---------------------------FVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR 95 (105)
T ss_dssp ---------------------------EEEESSTTHHHHHHHHCSEEETTEEEBCCCSCCS
T ss_pred ---------------------------EEEECCHHHHHHHHHhCCCeECCEEEEEEEccCC
Confidence 9999999999999977999999999999987644
No 242
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=3.5e-13 Score=111.84 Aligned_cols=77 Identities=21% Similarity=0.330 Sum_probs=70.7
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhcc--CCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCC
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKY--GRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFAR 628 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~--G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~G 628 (647)
..++++|||.|| |..++ +++|.++|++| |.|..|.+. +|+|||+|.+.++|.+|+..|||..|.|
T Consensus 12 ~~~~~~l~V~nL--p~~~t--------~~~l~~~F~~~g~g~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g 78 (99)
T 2cpd_A 12 MSSVKILYVRNL--MLSTS--------EEMIEKEFNNIKPGAVERVKKI---RDYAFVHFSNREDAVEAMKALNGKVLDG 78 (99)
T ss_dssp SSCCCEEEEESC--CTTCC--------HHHHHHHHHTTSTTCEEEEEEC---SSEEEEEESSHHHHHHHHHHHSSEEETT
T ss_pred cCCcCEEEEeCC--CCCCC--------HHHHHHHHHhcCCcceEEEEEe---CCeEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 356789999999 88887 89999999999 999999886 7899999999999999999999999999
Q ss_pred eEEEEEEcChhh
Q 006380 629 RLISAIFMKPED 640 (647)
Q Consensus 629 r~l~v~~~~~~~ 640 (647)
+.|+|.|+.+..
T Consensus 79 ~~l~v~~a~~~~ 90 (99)
T 2cpd_A 79 SPIEVTLAKPVD 90 (99)
T ss_dssp EEEEEECCCCCC
T ss_pred cEEEEEECCCCC
Confidence 999999988754
No 243
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.2e-13 Score=115.68 Aligned_cols=83 Identities=19% Similarity=0.295 Sum_probs=77.6
Q ss_pred CCCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecc
Q 006380 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEV 296 (647)
Q Consensus 217 ~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (647)
..+.++|||+|||..+|+++|.++|.+||.|..|.|+.++.++.++|||
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~a------------------------------- 58 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFA------------------------------- 58 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCE-------------------------------
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEE-------------------------------
Confidence 4567999999999999999999999999999999999999999999999
Q ss_pred cceEeecCCccccccCCcccccceeeEEecCCcCHHHHHH-hcCccccCccccCCCChhh
Q 006380 297 GMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAE 355 (647)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~-l~g~~~~g~~l~v~~~~~~ 355 (647)
||+|.+.++|..|+. |+|..+.|+.|.|.++...
T Consensus 59 -------------------------fV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2dnm_A 59 -------------------------FVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYG 93 (103)
T ss_dssp -------------------------EEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSC
T ss_pred -------------------------EEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcC
Confidence 999999999999996 9999999999999887543
No 244
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.9e-13 Score=114.54 Aligned_cols=77 Identities=19% Similarity=0.283 Sum_probs=69.8
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC------CCceEEEEeCCHHHHHHHHHHhcCcc
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR------SAGFVYLRFESTEAAASAQRAMHMRW 625 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~------~~g~afV~F~~~~~A~~A~~~l~g~~ 625 (647)
.+..+|||.|| |..++ +++|.++|++|| |..|.|..+ ++|+|||+|.+.++|.+|+ .|||..
T Consensus 13 ~~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~ 80 (104)
T 1wi8_A 13 SPPYTAFLGNL--PYDVT--------EESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEES 80 (104)
T ss_dssp SSCEEEEEESC--CSSCC--------HHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCE
T ss_pred CCCCEEEEeCC--CCcCC--------HHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCE
Confidence 45678999999 98888 899999999999 999998643 4789999999999999999 999999
Q ss_pred cCCeEEEEEEcChhh
Q 006380 626 FARRLISAIFMKPED 640 (647)
Q Consensus 626 ~~Gr~l~v~~~~~~~ 640 (647)
|.|+.|.|.++.+..
T Consensus 81 ~~g~~l~V~~a~~~~ 95 (104)
T 1wi8_A 81 LGNKRIRVDVADQAQ 95 (104)
T ss_dssp ETTEECEEEECCCCC
T ss_pred eCCcEEEEEEccCCC
Confidence 999999999998754
No 245
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.46 E-value=3.7e-13 Score=110.97 Aligned_cols=75 Identities=23% Similarity=0.545 Sum_probs=69.1
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEE
Q 006380 374 GAIDRKLYVGNLHF-NMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 452 (647)
Q Consensus 374 ~~~~~~l~v~nLp~-~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v 452 (647)
.++.++|||+|||. .+++++|+++|+.||.|..|.|. +|||||+|.+.++|.+|+..|+|. .+.|+.|.|
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V 89 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQE-MNFGKKLIL 89 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTS-EETTEECEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCC-EECCEEEEE
Confidence 34569999999998 99999999999999999999982 789999999999999999999996 799999999
Q ss_pred EeecC
Q 006380 453 SSVTD 457 (647)
Q Consensus 453 ~~~~~ 457 (647)
.++..
T Consensus 90 ~~a~~ 94 (97)
T 2xnq_A 90 EVSSS 94 (97)
T ss_dssp EECCC
T ss_pred EecCC
Confidence 99874
No 246
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.46 E-value=1.5e-13 Score=115.23 Aligned_cols=84 Identities=13% Similarity=0.305 Sum_probs=70.8
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEec---CCCceEEEEeCCHHHHHHHHHHhcCcccCC
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDK---RSAGFVYLRFESTEAAASAQRAMHMRWFAR 628 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~---~~~g~afV~F~~~~~A~~A~~~l~g~~~~G 628 (647)
..+++|||.|| |..+. +.+..++++|.++|++||.|..|.|++ .++|+|||+|.+.++|.+|+..|||..|.|
T Consensus 13 ~~~~~l~V~nL--p~~~~--~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 13 GIDSVIVVDNV--PQVGP--DRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp SCCSEEEEESC--CCCCT--TTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCEEEEeCC--Ccchh--hhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 44678999999 87663 122223799999999999999999873 258999999999999999999999999999
Q ss_pred e-EEEEEEcChh
Q 006380 629 R-LISAIFMKPE 639 (647)
Q Consensus 629 r-~l~v~~~~~~ 639 (647)
+ +|+|.++.+-
T Consensus 89 ~~~l~V~~a~~~ 100 (105)
T 2nlw_A 89 QHTFRVNLFTDF 100 (105)
T ss_dssp TCEEEEECSCCC
T ss_pred CceEEEEEcchH
Confidence 8 9999998753
No 247
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.46 E-value=2.8e-13 Score=113.80 Aligned_cols=80 Identities=19% Similarity=0.277 Sum_probs=72.1
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC----CCceEEEEeCCHHHHHHHHHHhcCccc
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR----SAGFVYLRFESTEAAASAQRAMHMRWF 626 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~----~~g~afV~F~~~~~A~~A~~~l~g~~~ 626 (647)
..++++|||.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+.++|.+|++.|||..|
T Consensus 12 ~~~~~~l~v~nL--p~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 81 (105)
T 2dnh_A 12 GGRDRKLFVGML--NKQQS--------EEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQT 81 (105)
T ss_dssp CCCCCEEEEESC--CTTCC--------HHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCC
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCcc
Confidence 355688999999 98887 8999999999999999998754 278999999999999999999999999
Q ss_pred CC---eEEEEEEcChhh
Q 006380 627 AR---RLISAIFMKPED 640 (647)
Q Consensus 627 ~G---r~l~v~~~~~~~ 640 (647)
.| +.|.|.|+.+..
T Consensus 82 ~gg~~~~l~V~~a~~~~ 98 (105)
T 2dnh_A 82 MPGASSSLVVKFADTDK 98 (105)
T ss_dssp CTTCSSCCEEEESCSSC
T ss_pred CCCCCccEEEEECccCc
Confidence 98 999999998754
No 248
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=2.5e-13 Score=112.08 Aligned_cols=79 Identities=30% Similarity=0.350 Sum_probs=70.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccCCCeeEE-EeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEE
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELV-QLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 453 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v-~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~ 453 (647)
...++|||+|||+.+++++|+++|+.||.|..| .|+.++.+ |.|||+|.+.++|..|+..|+|. .|.|+.|.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~-~~~g~~l~V~ 87 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGF-QLENFTLKVA 87 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTC-BCSSCBCEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCC-EECCcEEEEE
Confidence 345899999999999999999999999999999 58777533 34999999999999999999995 7999999999
Q ss_pred eecCC
Q 006380 454 SVTDH 458 (647)
Q Consensus 454 ~~~~~ 458 (647)
++.+.
T Consensus 88 ~a~~~ 92 (96)
T 2e44_A 88 YIPDE 92 (96)
T ss_dssp ECCCC
T ss_pred EcCcc
Confidence 99865
No 249
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.45 E-value=4.3e-14 Score=110.72 Aligned_cols=75 Identities=24% Similarity=0.409 Sum_probs=71.3
Q ss_pred eEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecccceEe
Q 006380 222 TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVGMVFF 301 (647)
Q Consensus 222 ~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (647)
+|||+|||+.+|+++|.++|++||.|..|.++.++.++.++|||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~a------------------------------------ 44 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFG------------------------------------ 44 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEE------------------------------------
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEE------------------------------------
Confidence 58999999999999999999999999999999999999999999
Q ss_pred ecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCC
Q 006380 302 LLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPS 352 (647)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~ 352 (647)
||+|.+.++|..|+.++|..+.|+.|.|.++
T Consensus 45 --------------------fV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 45 --------------------FVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp --------------------EEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred --------------------EEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 9999999999999999999999999988653
No 250
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=2.9e-13 Score=114.44 Aligned_cols=77 Identities=27% Similarity=0.509 Sum_probs=71.8
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
.++|||+|||..+++++|+++|+.||.|..|.|+.+ +|||||+|.+.++|.+|+..|+|. .|.|+.|.|.|+.
T Consensus 25 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 25 NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGT-TIEGHVVKCYWGK 97 (109)
T ss_dssp CCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTC-EETTEECEEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCC-EECCcEEEEEecC
Confidence 489999999999999999999999999999999876 789999999999999999999995 7999999999998
Q ss_pred CCCC
Q 006380 457 DHVG 460 (647)
Q Consensus 457 ~~~~ 460 (647)
+...
T Consensus 98 ~~~~ 101 (109)
T 1x4g_A 98 ESPD 101 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6543
No 251
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.45 E-value=6e-14 Score=116.64 Aligned_cols=77 Identities=21% Similarity=0.283 Sum_probs=67.2
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC------CCceEEEEeCCHHHHHHHHHHhcCc
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR------SAGFVYLRFESTEAAASAQRAMHMR 624 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~------~~g~afV~F~~~~~A~~A~~~l~g~ 624 (647)
..+.++|||.|| |..++ +++|.++|+.|| |..|.|..+ ++|+|||+|.+.++|.+|+ .|||.
T Consensus 16 ~~~~~~l~V~nL--p~~~t--------~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~ 83 (100)
T 2j76_E 16 KSPPYTAFLGNL--PYDVT--------EESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEE 83 (100)
T ss_dssp ----CEEEESCC--SSCCS--------SSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTC
T ss_pred CCCCcEEEEeCC--CCCCC--------HHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCC
Confidence 456688999999 88887 689999999999 999998654 3899999999999999999 89999
Q ss_pred ccCCeEEEEEEcChh
Q 006380 625 WFARRLISAIFMKPE 639 (647)
Q Consensus 625 ~~~Gr~l~v~~~~~~ 639 (647)
.|.|+.|.|.++.+.
T Consensus 84 ~~~g~~l~V~~a~~~ 98 (100)
T 2j76_E 84 SLGNRRIRVDVADQA 98 (100)
T ss_dssp CBTTBCCCCEECCCS
T ss_pred EECCeEEEEEeccCC
Confidence 999999999998764
No 252
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.45 E-value=2e-13 Score=116.67 Aligned_cols=80 Identities=18% Similarity=0.282 Sum_probs=72.3
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC----CCceEEEEeCCHHHHHHHHHHhcCcccC
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR----SAGFVYLRFESTEAAASAQRAMHMRWFA 627 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~----~~g~afV~F~~~~~A~~A~~~l~g~~~~ 627 (647)
.+.++|||.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+.++|.+|++.|||..|.
T Consensus 5 ~~~~~l~V~nL--p~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~ 74 (116)
T 2fy1_A 5 DHPGKLFIGGL--NRETN--------EKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLH 74 (116)
T ss_dssp CSCCEEEEECC--TTTCC--------HHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCS
T ss_pred CCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 45578999999 88887 8999999999999999999754 4799999999999999999999999999
Q ss_pred CeEEEEEEcChhhh
Q 006380 628 RRLISAIFMKPEDY 641 (647)
Q Consensus 628 Gr~l~v~~~~~~~~ 641 (647)
|+.|+|.++.+...
T Consensus 75 g~~l~V~~a~~~~~ 88 (116)
T 2fy1_A 75 GKAIKVEQAKKPSF 88 (116)
T ss_dssp SSBCEEEECCCSSC
T ss_pred CEEEEEEECCCCCC
Confidence 99999999987653
No 253
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.45 E-value=9.3e-14 Score=133.73 Aligned_cols=80 Identities=25% Similarity=0.397 Sum_probs=76.0
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCC--CeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEe
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFG--PVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 454 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g--~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~ 454 (647)
.++|||+|||+.+++++|+++|+.|| .|..|.|+.++.++.++|||||+|.+.++|.+||+.|++. .|.|+.|.|.+
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~-~~~Gr~l~V~~ 146 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKR-ELHGQNPVVTP 146 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTS-CBTTBCCEEEE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC-eECCEEeEEEE
Confidence 47999999999999999999999999 9999999999889999999999999999999999999996 79999999999
Q ss_pred ecC
Q 006380 455 VTD 457 (647)
Q Consensus 455 ~~~ 457 (647)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 874
No 254
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.45 E-value=1.7e-13 Score=117.18 Aligned_cols=85 Identities=24% Similarity=0.429 Sum_probs=78.4
Q ss_pred CCCCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeec
Q 006380 216 PERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAE 295 (647)
Q Consensus 216 ~~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (647)
...+.++|||+|||..+|+++|.++|.+||.|..|.|+.++.++.++|||
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~a------------------------------ 60 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYG------------------------------ 60 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEE------------------------------
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEE------------------------------
Confidence 34578999999999999999999999999999999999999999999999
Q ss_pred ccceEeecCCccccccCCcccccceeeEEecCCcCHHHHHH-hcCccccCccccCCCChhhh
Q 006380 296 VGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEK 356 (647)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~-l~g~~~~g~~l~v~~~~~~~ 356 (647)
||+|.+.++|..|+. |+|..+.|+.|.|.++....
T Consensus 61 --------------------------fV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 96 (115)
T 2dgo_A 61 --------------------------FVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 96 (115)
T ss_dssp --------------------------EEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCC
T ss_pred --------------------------EEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCCC
Confidence 999999999999995 99999999999998876543
No 255
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=2.3e-13 Score=112.38 Aligned_cols=78 Identities=23% Similarity=0.403 Sum_probs=69.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEe
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 454 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~ 454 (647)
...++|||+|||+.+++++|+++|+.||.|. +.++.+ .++|||||+|.+.++|.+|+..|+|. .|.|+.|.|.+
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~~ 90 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGL-RLGTDTLRVAL 90 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTC-CSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCC-EECCcEEEEEE
Confidence 3468999999999999999999999999996 566543 56899999999999999999999995 79999999999
Q ss_pred ecCC
Q 006380 455 VTDH 458 (647)
Q Consensus 455 ~~~~ 458 (647)
+.+.
T Consensus 91 a~~~ 94 (97)
T 2e5j_A 91 ARQQ 94 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9754
No 256
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.45 E-value=1.1e-13 Score=115.31 Aligned_cols=75 Identities=17% Similarity=0.374 Sum_probs=70.5
Q ss_pred eEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCCeEEEEEE
Q 006380 556 CLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIF 635 (647)
Q Consensus 556 ~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l~v~~ 635 (647)
+|+|.|| |..++ +++|.++|++||.|..|.|..+++|+|||+|.+.++|.+|++.|||..|.|+.|+|.+
T Consensus 2 ~l~V~nL--p~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 71 (101)
T 2hvz_A 2 KVYVGNL--GTGAG--------KGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVEL 71 (101)
T ss_dssp EEEEECC--CSSCS--------HHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEE
T ss_pred EEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEE
Confidence 6999999 88887 8999999999999999999877899999999999999999999999999999999999
Q ss_pred cChhh
Q 006380 636 MKPED 640 (647)
Q Consensus 636 ~~~~~ 640 (647)
+.+..
T Consensus 72 a~~~~ 76 (101)
T 2hvz_A 72 STGMP 76 (101)
T ss_dssp SSSCC
T ss_pred ccCCC
Confidence 87654
No 257
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.45 E-value=2.3e-13 Score=116.40 Aligned_cols=78 Identities=24% Similarity=0.490 Sum_probs=71.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEee
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 455 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~ 455 (647)
++++|||+|||+.+++++|+++|+.||.|..|.|+.+ +.++|||||+|.+.++|..|+..|||. .|.|+.|.|.|+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v~~a 82 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGF-NVSNRYLVVLYY 82 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTC-BSSSCBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCC-EECCeEEEEEEe
Confidence 3589999999999999999999999999999999875 445899999999999999999999996 799999999998
Q ss_pred cC
Q 006380 456 TD 457 (647)
Q Consensus 456 ~~ 457 (647)
.+
T Consensus 83 ~~ 84 (115)
T 3lqv_A 83 NA 84 (115)
T ss_dssp CH
T ss_pred cC
Confidence 74
No 258
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=5.2e-14 Score=120.23 Aligned_cols=86 Identities=59% Similarity=0.959 Sum_probs=79.8
Q ss_pred CCCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecc
Q 006380 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEV 296 (647)
Q Consensus 217 ~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (647)
+...++|||+|||..+|+++|.++|.+||.|..|.|+.++.++.++|||
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~a------------------------------- 70 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIA------------------------------- 70 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCE-------------------------------
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEE-------------------------------
Confidence 3456899999999999999999999999999999999999999999999
Q ss_pred cceEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCChhhhhh
Q 006380 297 GMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNL 358 (647)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~~~~~~ 358 (647)
||+|.+.++|..|+.|+|..+.|+.|.|.++......
T Consensus 71 -------------------------fV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~~~ 107 (114)
T 2cq4_A 71 -------------------------YVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNR 107 (114)
T ss_dssp -------------------------EEEESCGGGHHHHHHHTTEEETTEEEEEEEHHHHHHH
T ss_pred -------------------------EEEeCcHHHHHHHHHcCCCEeCCeEEEEEecCCCccC
Confidence 9999999999999999999999999999988765543
No 259
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.45 E-value=1.9e-13 Score=114.92 Aligned_cols=76 Identities=18% Similarity=0.201 Sum_probs=69.6
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCC-CeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEee
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFG-PVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 455 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~ 455 (647)
..+|||+|||+.+++++|+++|+.|| .|..+.|+.. .++|||||+|.+.++|.+||..|+|. .|.|+.|.|.++
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~-~l~Gr~i~V~~a 102 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNI-EFRGSVITVERD 102 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTE-EETTEEEEEEES
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCC-EECCeEEEEEEC
Confidence 37999999999999999999999999 8999988643 36899999999999999999999995 899999999998
Q ss_pred cC
Q 006380 456 TD 457 (647)
Q Consensus 456 ~~ 457 (647)
..
T Consensus 103 ~~ 104 (111)
T 2jvr_A 103 DN 104 (111)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 260
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.45 E-value=2e-13 Score=125.84 Aligned_cols=80 Identities=26% Similarity=0.470 Sum_probs=76.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEee
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 455 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~ 455 (647)
..++|||+|||+.+++++|+++|+.||.|..|.|+.+. ++.++|||||+|.+.++|.+||..|++. .|.|+.|.|.|+
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~-~l~Gr~l~V~~a 164 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGV-PLDGRPMDIQLV 164 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTC-BCSSSBCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCC-EECCEEEEEEEe
Confidence 35899999999999999999999999999999999998 9999999999999999999999999995 799999999999
Q ss_pred cC
Q 006380 456 TD 457 (647)
Q Consensus 456 ~~ 457 (647)
..
T Consensus 165 ~~ 166 (177)
T 2f3j_A 165 AS 166 (177)
T ss_dssp SS
T ss_pred cC
Confidence 75
No 261
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=1.4e-13 Score=116.58 Aligned_cols=75 Identities=19% Similarity=0.157 Sum_probs=69.6
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
.++|||+|||+.+++++|+++|++||.|..|.|+. ++|||||+|.+.++|..|+..|||. .|.|+.|.|.|+.
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V~~a~ 82 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYS-KFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTC-BSSSSBCEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCC-EECCeEEEEEECC
Confidence 37999999999999999999999999999999875 3789999999999999999999996 7999999999997
Q ss_pred CC
Q 006380 457 DH 458 (647)
Q Consensus 457 ~~ 458 (647)
..
T Consensus 83 ~~ 84 (111)
T 1whx_A 83 IG 84 (111)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 262
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=7.2e-14 Score=119.59 Aligned_cols=84 Identities=26% Similarity=0.378 Sum_probs=71.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEee
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 455 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~ 455 (647)
+.++|||+|||+.+++++|+++|+.||.|..|.+..+..++.++|||||+|.+.++|.+||..|++. .|.|+.|.|.|+
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~-~~~g~~l~v~~a 102 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGY-KLYGKILVIEFG 102 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTC-BCSSCBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCC-EeCCcEEEEEEc
Confidence 4589999999999999999999999999843322222227788999999999999999999999995 799999999999
Q ss_pred cCCCC
Q 006380 456 TDHVG 460 (647)
Q Consensus 456 ~~~~~ 460 (647)
.+...
T Consensus 103 ~~~~~ 107 (115)
T 2cpx_A 103 KNKKQ 107 (115)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 86543
No 263
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=5.5e-13 Score=108.48 Aligned_cols=75 Identities=35% Similarity=0.481 Sum_probs=69.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEee
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 455 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~ 455 (647)
..++|||+|||+.+++++|+++|+.||.|..|.|++ +||||+|.+.++|.+|+..|++. .|.|+.|.|.++
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~a 78 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGK-EVKGKRINVELS 78 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTC-EETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCC-EECCcEEEEEEC
Confidence 458999999999999999999999999999999964 49999999999999999999995 799999999999
Q ss_pred cCCC
Q 006380 456 TDHV 459 (647)
Q Consensus 456 ~~~~ 459 (647)
.+..
T Consensus 79 ~~~~ 82 (90)
T 2dnp_A 79 TKGQ 82 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8653
No 264
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.1e-12 Score=108.90 Aligned_cols=76 Identities=33% Similarity=0.467 Sum_probs=69.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccC--CCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEE
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPF--GPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 452 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~--g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v 452 (647)
...++|||+|||+.+++++|+++|+.| |.|..|.++ +|||||+|.+.++|.+|+..|++. .|.|+.|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v 83 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGK-VLDGSPIEV 83 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSE-EETTEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCC-EeCCcEEEE
Confidence 345899999999999999999999999 999998874 579999999999999999999995 799999999
Q ss_pred EeecCCC
Q 006380 453 SSVTDHV 459 (647)
Q Consensus 453 ~~~~~~~ 459 (647)
.++.+..
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpd_A 84 TLAKPVD 90 (99)
T ss_dssp ECCCCCC
T ss_pred EECCCCC
Confidence 9998644
No 265
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.44 E-value=2.8e-13 Score=114.75 Aligned_cols=73 Identities=29% Similarity=0.621 Sum_probs=68.4
Q ss_pred CCceEEEcCCCCC-CCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEe
Q 006380 376 IDRKLYVGNLHFN-MTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSS 454 (647)
Q Consensus 376 ~~~~l~v~nLp~~-~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~ 454 (647)
..++|||+|||+. +++++|+++|++||.|..|.| ++|||||+|.+.++|.+|+..|++. .|.|+.|.|.+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~V~~ 96 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGR-VLAGQTLDINM 96 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTC-EETTEECCEEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCC-EECCeEEEEEE
Confidence 3489999999999 999999999999999999998 4789999999999999999999995 79999999999
Q ss_pred ecC
Q 006380 455 VTD 457 (647)
Q Consensus 455 ~~~ 457 (647)
+..
T Consensus 97 a~~ 99 (110)
T 1wf1_A 97 AGE 99 (110)
T ss_dssp SCC
T ss_pred CCC
Confidence 974
No 266
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.44 E-value=1.5e-13 Score=113.24 Aligned_cols=76 Identities=16% Similarity=0.271 Sum_probs=69.1
Q ss_pred CCCCceEEecCcCCCC-CCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCCe
Q 006380 551 GSPSECLLLKNMFDPA-METDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARR 629 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~-~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr 629 (647)
.+++++|||.|| |. .++ +++|.++|++||.|..|.|. +|+|||+|.+.++|.+|+..|||..|.|+
T Consensus 7 ~~~~~~l~V~nl--p~~~~t--------~~~l~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 73 (96)
T 2kvi_A 7 IPPKSRLFIGNL--PLKNVS--------KEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIECESQEMNFGK 73 (96)
T ss_dssp --CCEEEEEESS--TTSCCC--------HHHHHHHHTTTCCCCEEEEE---TTEEEEEESCHHHHHHHHHHHTCSSCBTT
T ss_pred CCCCCEEEEeCC--CcccCC--------HHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 356789999999 87 777 89999999999999999996 79999999999999999999999999999
Q ss_pred EEEEEEcChh
Q 006380 630 LISAIFMKPE 639 (647)
Q Consensus 630 ~l~v~~~~~~ 639 (647)
.|.|.++.+.
T Consensus 74 ~l~V~~a~~~ 83 (96)
T 2kvi_A 74 KLILEVSSSN 83 (96)
T ss_dssp TBCEEEEECC
T ss_pred EEEEEEcCcC
Confidence 9999998654
No 267
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.44 E-value=2.2e-13 Score=113.50 Aligned_cols=74 Identities=27% Similarity=0.344 Sum_probs=69.1
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
.++|||+|||..+++++|+++|+.||.|..|.|+. ++|||||+|.+.++|..|+..|+|. .|.|+.|.|.|+.
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V~~a~ 99 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANF-PFQGRNLRTGWGK 99 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTC-EETTEECCCCBCC
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCC-eECCeEEEEEecc
Confidence 48999999999999999999999999999999974 4799999999999999999999995 7999999999987
Q ss_pred C
Q 006380 457 D 457 (647)
Q Consensus 457 ~ 457 (647)
+
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 268
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.44 E-value=2e-13 Score=114.39 Aligned_cols=78 Identities=15% Similarity=0.194 Sum_probs=70.0
Q ss_pred ceEEEcCC----CCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCC----HHH----HHHHHH--HHcCCe
Q 006380 378 RKLYVGNL----HFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQ----LEH----AKAAQS--ALNGKL 443 (647)
Q Consensus 378 ~~l~v~nL----p~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~----~~~----A~~Al~--~l~g~~ 443 (647)
..|||+|| |+.+++.+|+++|+.||.|.+|.++.|+.||.++|||||+|.+ +++ |.+|+. .|+|.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~- 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC- 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE-
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC-
Confidence 68999999 9999999999999999999999999999999999999999996 433 788887 67995
Q ss_pred eeCCeEEEEEeec
Q 006380 444 EIVGRTLKVSSVT 456 (647)
Q Consensus 444 ~~~g~~l~v~~~~ 456 (647)
.|+|++|.|.+-.
T Consensus 82 ~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 82 FIMGFKFEVILNK 94 (136)
T ss_dssp EETTEEEEEEECC
T ss_pred eecCcEEEEEECc
Confidence 8999999998744
No 269
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.44 E-value=2.1e-13 Score=113.66 Aligned_cols=76 Identities=33% Similarity=0.535 Sum_probs=71.0
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeecC
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVTD 457 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~~ 457 (647)
++|||+|||+.+++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|.+|+..|++. .|.|+.|.|.++.+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGK-VICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHS-CSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCC-eECCcEEEEEEccC
Confidence 47999999999999999999999999999999876 5899999999999999999999996 79999999999986
Q ss_pred CC
Q 006380 458 HV 459 (647)
Q Consensus 458 ~~ 459 (647)
..
T Consensus 75 ~~ 76 (101)
T 2hvz_A 75 MP 76 (101)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 270
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=3.1e-13 Score=115.43 Aligned_cols=79 Identities=16% Similarity=0.128 Sum_probs=71.1
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC----CCceEEEEeCCHHHHHHHHHHhcCccc
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR----SAGFVYLRFESTEAAASAQRAMHMRWF 626 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~----~~g~afV~F~~~~~A~~A~~~l~g~~~ 626 (647)
..++++|||.|| |..++ +++|.++|.+||.|..|.|..+ ++|+|||+|.+.++|.+|+..|||..|
T Consensus 12 ~~~~~~l~V~nl--p~~~~--------~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 81 (114)
T 2do0_A 12 GRLGSTVFVANL--DYKVG--------WKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLL 81 (114)
T ss_dssp CCCCSCEEEESC--CTTCC--------HHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 356678999999 88887 8999999999999999988654 378999999999999999999999999
Q ss_pred CCeEEEEEEcChh
Q 006380 627 ARRLISAIFMKPE 639 (647)
Q Consensus 627 ~Gr~l~v~~~~~~ 639 (647)
.|+.|.|.|+...
T Consensus 82 ~g~~l~v~~a~~~ 94 (114)
T 2do0_A 82 FDRPMHVKMDERA 94 (114)
T ss_dssp TTEECEEEECSCC
T ss_pred CCCEEEEEEcccC
Confidence 9999999998643
No 271
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=8.7e-14 Score=116.72 Aligned_cols=78 Identities=21% Similarity=0.294 Sum_probs=71.1
Q ss_pred CCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCHHHHHHHHHHhcCcccC
Q 006380 553 PSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAMHMRWFA 627 (647)
Q Consensus 553 ~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~~~A~~A~~~l~g~~~~ 627 (647)
+.++|||.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+.++|.+|++.|||..|.
T Consensus 7 ~~~~l~V~nl--p~~~~--------~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 76 (104)
T 1p1t_A 7 SLRSVFVGNI--PYEAT--------EEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFS 76 (104)
T ss_dssp HHSCEEEESC--CTTSC--------HHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCS
T ss_pred CccEEEEeCC--CCcCC--------HHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 4578999999 88887 7999999999999999988644 3799999999999999999999999999
Q ss_pred CeEEEEEEcChhh
Q 006380 628 RRLISAIFMKPED 640 (647)
Q Consensus 628 Gr~l~v~~~~~~~ 640 (647)
|+.|+|.++.+..
T Consensus 77 g~~l~v~~a~~~~ 89 (104)
T 1p1t_A 77 GRALRVDNAASEK 89 (104)
T ss_dssp SSCBEEEETTCTT
T ss_pred CcEEEEEeCCCcc
Confidence 9999999998765
No 272
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.44 E-value=4e-13 Score=116.55 Aligned_cols=79 Identities=20% Similarity=0.236 Sum_probs=72.3
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC----CCceEEEEeCCHHHHHHHHHHhcCcccC
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR----SAGFVYLRFESTEAAASAQRAMHMRWFA 627 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~----~~g~afV~F~~~~~A~~A~~~l~g~~~~ 627 (647)
.++++|||.|| |..++ +++|.++|+.||.|..|.|..+ ++|+|||+|.+.++|.+|+..|||..|.
T Consensus 33 ~~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 102 (124)
T 2kt5_A 33 ETGAKLLVSNL--DFGVS--------DADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD 102 (124)
T ss_dssp SSCEEEEEESC--CSSCC--------HHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESS
T ss_pred CCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 45678999999 88887 7999999999999999999754 5899999999999999999999999999
Q ss_pred CeEEEEEEcChhh
Q 006380 628 RRLISAIFMKPED 640 (647)
Q Consensus 628 Gr~l~v~~~~~~~ 640 (647)
|+.|+|.|+.+..
T Consensus 103 g~~l~V~~a~~~~ 115 (124)
T 2kt5_A 103 GRPMDIQLVASQI 115 (124)
T ss_dssp SCEEEEEEECCTT
T ss_pred CcEEEEEEeCCCC
Confidence 9999999988754
No 273
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.44 E-value=4.5e-14 Score=117.72 Aligned_cols=81 Identities=23% Similarity=0.387 Sum_probs=73.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEee
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 455 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~ 455 (647)
...+|||+|||+.+++++|+++|+.||.|.. .++.+..++.++|||||+|.+.++|.+||+ |++. .|.|+.|.|.++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~-~~~g~~l~V~~a 92 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGL-KVFGNEIKLEKP 92 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGC-CBTTBCCEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCc-EECCcEEEEEEc
Confidence 3589999999999999999999999999987 666666688899999999999999999997 9995 799999999999
Q ss_pred cCCC
Q 006380 456 TDHV 459 (647)
Q Consensus 456 ~~~~ 459 (647)
.+..
T Consensus 93 ~~~~ 96 (101)
T 1fj7_A 93 KGRD 96 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8643
No 274
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.44 E-value=1e-13 Score=116.06 Aligned_cols=85 Identities=27% Similarity=0.479 Sum_probs=78.2
Q ss_pred CCCCCCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeee
Q 006380 214 ADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLV 293 (647)
Q Consensus 214 ~~~~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (647)
..+..+.++|||+|||+.+|+++|.++|.+|| |..|.|+.++.++.++|||
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~a---------------------------- 59 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFC---------------------------- 59 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEE----------------------------
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEE----------------------------
Confidence 34456789999999999999999999999997 9999999999999999999
Q ss_pred ecccceEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCChhh
Q 006380 294 AEVGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAE 355 (647)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~~~ 355 (647)
||+|.+.++|..|+.|+|..+.|+.|.|.++...
T Consensus 60 ----------------------------fV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2dng_A 60 ----------------------------YVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGR 93 (103)
T ss_dssp ----------------------------EEEESSHHHHHHHGGGTTCEETTEECEEEECCCC
T ss_pred ----------------------------EEEECCHHHHHHHHhhCCCeECCeEEEEEEecCC
Confidence 9999999999999999999999999999887543
No 275
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.44 E-value=1.3e-13 Score=111.93 Aligned_cols=80 Identities=31% Similarity=0.512 Sum_probs=75.6
Q ss_pred CCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecccc
Q 006380 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVGM 298 (647)
Q Consensus 219 ~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (647)
..++|||+|||..+|+++|.++|++||.|..|.++.++.++.++|||
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~a--------------------------------- 51 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFA--------------------------------- 51 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEE---------------------------------
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEE---------------------------------
Confidence 45899999999999999999999999999999999999999999999
Q ss_pred eEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCChh
Q 006380 299 VFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEA 354 (647)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~~ 354 (647)
||+|.+.++|..|+.++|..+.|+.|.|.++.+
T Consensus 52 -----------------------fV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 52 -----------------------YIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp -----------------------EEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred -----------------------EEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 999999999999999999999999999987754
No 276
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.43 E-value=3.4e-13 Score=111.25 Aligned_cols=78 Identities=29% Similarity=0.492 Sum_probs=70.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEee
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 455 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~ 455 (647)
..++|||+|||+.+++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|+|. .|.|+.|.|.++
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~a 88 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGA-EIDGRSVSLYYT 88 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEE-EETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCC-EECCeEEEEEEc
Confidence 35899999999999999999999999988666 237889999999999999999999999994 899999999999
Q ss_pred cCCC
Q 006380 456 TDHV 459 (647)
Q Consensus 456 ~~~~ 459 (647)
.+..
T Consensus 89 ~~~~ 92 (96)
T 1fjc_A 89 GEKG 92 (96)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 7543
No 277
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1e-13 Score=118.22 Aligned_cols=85 Identities=16% Similarity=0.228 Sum_probs=78.1
Q ss_pred CCCCCceEEeccCCccCCHHHHHHHHHhcCCc-eeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeee
Q 006380 216 PERDQRTVFAYQMPLKATERDVYEFFSKAGKV-RDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVA 294 (647)
Q Consensus 216 ~~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v-~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (647)
...+.++|||+|||+.+|+++|.++|.+||.| ..|.|+.++ +|.++|||
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~a----------------------------- 60 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQA----------------------------- 60 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCE-----------------------------
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEE-----------------------------
Confidence 44567999999999999999999999999999 899999998 89999999
Q ss_pred cccceEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCChhhhh
Q 006380 295 EVGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKN 357 (647)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~~~~~ 357 (647)
||+|.+.++|..||.+++..+.|+.|.|.++.....
T Consensus 61 ---------------------------fV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a~~~~~ 96 (114)
T 2cpy_A 61 ---------------------------LVQFKNEDDARKSERLHRKKLNGREAFVHVVTLEDM 96 (114)
T ss_dssp ---------------------------EEECSSHHHHHHHGGGCSEEETTEEEEEEEECHHHH
T ss_pred ---------------------------EEEECCHHHHHHHHHhCCCccCCeEEEEEECCHHHH
Confidence 999999999999998899999999999988765543
No 278
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.43 E-value=5.5e-13 Score=111.15 Aligned_cols=81 Identities=20% Similarity=0.148 Sum_probs=71.5
Q ss_pred CCceEEEcCCCC-----CCCHHHHHHhhccCCCeeEEEeccCCCC-CCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeE
Q 006380 376 IDRKLYVGNLHF-----NMTETQLRKLFEPFGPVELVQLPLDIET-GQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRT 449 (647)
Q Consensus 376 ~~~~l~v~nLp~-----~~~e~~l~~~f~~~g~i~~v~i~~~~~~-~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~ 449 (647)
++++|+|.||.. ..++++|+++|++||.|..|.|+.++.+ +.++|+|||+|.+.++|.+|+..|||+ .|+|++
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~-~~~Gr~ 85 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGR-YFGGRV 85 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTC-EETTEE
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCC-EECCcE
Confidence 458999999963 2378999999999999999999987643 678999999999999999999999997 799999
Q ss_pred EEEEeecC
Q 006380 450 LKVSSVTD 457 (647)
Q Consensus 450 l~v~~~~~ 457 (647)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999863
No 279
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.43 E-value=4.6e-13 Score=119.29 Aligned_cols=76 Identities=17% Similarity=0.127 Sum_probs=68.2
Q ss_pred eEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEe-cCCCceEEEEeCCHHHHHHHHHHhcCcccCC--eEEE
Q 006380 556 CLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVD-KRSAGFVYLRFESTEAAASAQRAMHMRWFAR--RLIS 632 (647)
Q Consensus 556 ~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~-~~~~g~afV~F~~~~~A~~A~~~l~g~~~~G--r~l~ 632 (647)
.|+|.|| +..++ +++|.++|++||.|+.|.|. +.++|+|||+|.+.++|..|++.|||..|.| ++|+
T Consensus 48 ~l~VgNL--~~~vt--------ed~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~ 117 (164)
T 1sjr_A 48 RIIVENL--FYPVT--------LDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 117 (164)
T ss_dssp EEEECSC--CSCCC--------HHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEE
T ss_pred EEEEeCc--CCCCC--------HHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEE
Confidence 4889999 88777 79999999999999999885 3457899999999999999999999999965 9999
Q ss_pred EEEcChhhh
Q 006380 633 AIFMKPEDY 641 (647)
Q Consensus 633 v~~~~~~~~ 641 (647)
|+|+.+...
T Consensus 118 V~~Ak~~~l 126 (164)
T 1sjr_A 118 IDFSKLTSL 126 (164)
T ss_dssp EEECSSSSC
T ss_pred EEEecCCcc
Confidence 999988753
No 280
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.43 E-value=1.4e-13 Score=114.99 Aligned_cols=79 Identities=28% Similarity=0.538 Sum_probs=73.9
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
.++|||+|||+.+++++|+++|+.||.|..|.|+.+. ++.++|||||+|.+.++|.+|+. ++ ..++|+.|.|.++.
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~-~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQ-INFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CC-CEETTEECEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CC-CeECCEEEEEEECC
Confidence 4899999999999999999999999999999999998 99999999999999999999996 77 47999999999998
Q ss_pred CCC
Q 006380 457 DHV 459 (647)
Q Consensus 457 ~~~ 459 (647)
...
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 644
No 281
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.43 E-value=6.4e-13 Score=113.94 Aligned_cols=75 Identities=25% Similarity=0.366 Sum_probs=68.1
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeE-EEEEeCCHHHHHHHHHHHcCCeeeCC--eEEEEEe
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGF-GFVQFAQLEHAKAAQSALNGKLEIVG--RTLKVSS 454 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~Al~~l~g~~~~~g--~~l~v~~ 454 (647)
..|||+||++.+++++|+++|++||.|..|.|+... +|| |||+|.+.++|..|+..|+|. .|.| +.|+|.|
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~-~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQ-NIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTC-EEETTEEEEEEEE
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCC-eecCCCcEEEEEe
Confidence 577899999999999999999999999999887642 677 999999999999999999996 7887 8999999
Q ss_pred ecCC
Q 006380 455 VTDH 458 (647)
Q Consensus 455 ~~~~ 458 (647)
++..
T Consensus 103 ak~~ 106 (130)
T 3zzy_A 103 SKLT 106 (130)
T ss_dssp CSCS
T ss_pred cCCC
Confidence 9864
No 282
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.43 E-value=7.3e-13 Score=113.21 Aligned_cols=79 Identities=22% Similarity=0.255 Sum_probs=68.7
Q ss_pred CCCce--EEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCce-EEEEeCCHHHHHHHHHHhcCcccCC
Q 006380 552 SPSEC--LLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGF-VYLRFESTEAAASAQRAMHMRWFAR 628 (647)
Q Consensus 552 ~~~~~--l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~-afV~F~~~~~A~~A~~~l~g~~~~G 628 (647)
+|+++ |+|.|| +..++ +++|.++|++||.|..|.|... .|+ |||+|.+.++|..|++.|||..|.|
T Consensus 21 ~ps~vl~l~V~NL--~~~vt--------~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g 89 (124)
T 2e5i_A 21 GGNKVLLLSIQNP--LYPIT--------VDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYA 89 (124)
T ss_dssp CCCSEEEEEEESC--CSCCC--------HHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBT
T ss_pred CCCcEEEEEEcCc--CCCCC--------HHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecC
Confidence 34445 678999 88777 7999999999999999988654 596 9999999999999999999999987
Q ss_pred --eEEEEEEcChhhh
Q 006380 629 --RLISAIFMKPEDY 641 (647)
Q Consensus 629 --r~l~v~~~~~~~~ 641 (647)
+.|+|.|+.+..-
T Consensus 90 ~~~~l~V~~Ak~~~l 104 (124)
T 2e5i_A 90 GCCTLKIEYARPTRL 104 (124)
T ss_dssp TBSEEEEECCSCSCC
T ss_pred CCeEEEEEEecCCcc
Confidence 6999999988753
No 283
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.43 E-value=1e-13 Score=121.90 Aligned_cols=77 Identities=23% Similarity=0.385 Sum_probs=70.1
Q ss_pred CCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCHHHHHHHHHHhcCcccC
Q 006380 553 PSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAMHMRWFA 627 (647)
Q Consensus 553 ~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~~~A~~A~~~l~g~~~~ 627 (647)
+.++|+|.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+.++|.+|+..|||..|.
T Consensus 46 ~~~~l~V~nL--p~~~t--------e~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~ 115 (135)
T 2lea_A 46 GMTSLKVDNL--TYRTS--------PDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD 115 (135)
T ss_dssp GCCCEEEECC--CSSCH--------HHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSS
T ss_pred CCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4568999999 88887 7999999999999999998643 5889999999999999999999999999
Q ss_pred CeEEEEEEcChh
Q 006380 628 RRLISAIFMKPE 639 (647)
Q Consensus 628 Gr~l~v~~~~~~ 639 (647)
|+.|+|.|+.+.
T Consensus 116 g~~l~V~~a~~~ 127 (135)
T 2lea_A 116 GRELRVQMARYG 127 (135)
T ss_dssp SSCCEEEECCCC
T ss_pred CEEEEEEECCCC
Confidence 999999998764
No 284
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.43 E-value=1.7e-13 Score=115.42 Aligned_cols=85 Identities=26% Similarity=0.467 Sum_probs=77.8
Q ss_pred CCCCCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeee
Q 006380 215 DPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVA 294 (647)
Q Consensus 215 ~~~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (647)
....+.++|||+|||..+|+++|.++|.+||.|..|.|+.++.++.++|||
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~a----------------------------- 58 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCA----------------------------- 58 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEE-----------------------------
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEE-----------------------------
Confidence 345678999999999999999999999999999999999999999999999
Q ss_pred cccceEeecCCccccccCCcccccceeeEEecCCcCHHHHHH-hcCccc---cCccccCCCChhh
Q 006380 295 EVGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA-LSGQLL---LGQPVMVKPSEAE 355 (647)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~-l~g~~~---~g~~l~v~~~~~~ 355 (647)
||+|.+.++|..|+. |+|..+ .|+.|.|.++...
T Consensus 59 ---------------------------fV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~ 96 (106)
T 2dgp_A 59 ---------------------------FLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSE 96 (106)
T ss_dssp ---------------------------EEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCC
T ss_pred ---------------------------EEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCcc
Confidence 999999999999995 999887 8899999887543
No 285
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=1.6e-13 Score=117.68 Aligned_cols=77 Identities=22% Similarity=0.223 Sum_probs=70.5
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCe----eEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEE
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPV----ELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 452 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i----~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v 452 (647)
..+|||+|||+.+++++|+++|+.||.| ..|.|+.+. +|.++|||||+|.+.++|.+||.. ++. .|.|+.|.|
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~-~l~gR~i~V 99 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKD-LLGKRYIEL 99 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTE-ESSSCEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCC-eeCCeEEEE
Confidence 4899999999999999999999999975 689999885 899999999999999999999965 885 799999999
Q ss_pred Eeec
Q 006380 453 SSVT 456 (647)
Q Consensus 453 ~~~~ 456 (647)
..+.
T Consensus 100 ~~a~ 103 (123)
T 2dha_A 100 FRST 103 (123)
T ss_dssp EEEC
T ss_pred EECC
Confidence 8876
No 286
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.42 E-value=1e-13 Score=108.56 Aligned_cols=74 Identities=19% Similarity=0.309 Sum_probs=70.5
Q ss_pred eEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecccceEe
Q 006380 222 TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVGMVFF 301 (647)
Q Consensus 222 ~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (647)
+|||+|||..+|+++|.++|++||.|..+.++.++.++.++|||
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~a------------------------------------ 44 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFC------------------------------------ 44 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCE------------------------------------
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEE------------------------------------
Confidence 58999999999999999999999999999999999999999999
Q ss_pred ecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCC
Q 006380 302 LLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKP 351 (647)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~ 351 (647)
||+|.+.++|..|+.+++..+.|+.|.|..
T Consensus 45 --------------------fV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 45 --------------------FITFKEEEPVKKIMEKKYHNVGLSKCEIKV 74 (75)
T ss_dssp --------------------EEECSSSHHHHHHHTTSSCCBTTBCCCEEE
T ss_pred --------------------EEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 999999999999999999999999998764
No 287
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=2.2e-13 Score=113.13 Aligned_cols=81 Identities=16% Similarity=0.275 Sum_probs=75.7
Q ss_pred CCCCceEEeccCCccCCHHHHHHHHHhcCCce-eEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeec
Q 006380 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVR-DVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAE 295 (647)
Q Consensus 217 ~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~-~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (647)
..+.++|||+|||+.+|+++|.++|.+||.|. .|.|+.++.++.++|||
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~a------------------------------ 55 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYC------------------------------ 55 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEE------------------------------
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEE------------------------------
Confidence 45679999999999999999999999999999 99999999999999999
Q ss_pred ccceEeecCCccccccCCcccccceeeEEecCCcCHHHHHH-hcCccccCcc----ccCCCCh
Q 006380 296 VGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA-LSGQLLLGQP----VMVKPSE 353 (647)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~-l~g~~~~g~~----l~v~~~~ 353 (647)
||+|.+.++|..|+. |||..+.|.. |.|.++.
T Consensus 56 --------------------------fV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~ 92 (99)
T 2div_A 56 --------------------------FVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYAT 92 (99)
T ss_dssp --------------------------EEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETT
T ss_pred --------------------------EEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecC
Confidence 999999999999996 9999999999 8887764
No 288
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=1.9e-13 Score=111.98 Aligned_cols=77 Identities=10% Similarity=0.142 Sum_probs=69.2
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCC-eEEEEEecCCCceEEEEeCCHHHHHHHHHHhcC-cccCCe
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGR-VKHIYVDKRSAGFVYLRFESTEAAASAQRAMHM-RWFARR 629 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~-v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g-~~~~Gr 629 (647)
.+.++|||.|| |..++ +++|.++|++||. |..+.+. ++|+|||+|.+.++|.+|++.||| ..|.|+
T Consensus 6 ~~~~~l~V~nL--p~~~t--------~~~l~~~F~~~G~vv~~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~ 73 (93)
T 2cqh_A 6 SGMNKLYIGNL--SPAVT--------ADDLRQLFGDRKLPLAGQVLL--KSGYAFVDYPDQNWAIRAIETLSGKVELHGK 73 (93)
T ss_dssp CCCCCEEEECC--CTTCC--------HHHHHHHHHHTTCCCSSCEEE--ETTEEEECCSCHHHHHHHHHHHTTTCEETTE
T ss_pred CCCcEEEEeCC--CCCCC--------HHHHHHHHHHcCCceEEEEEc--CCCEEEEEECCHHHHHHHHHHccCCeeECCE
Confidence 45678999999 88887 8999999999999 6667775 589999999999999999999999 999999
Q ss_pred EEEEEEcChhh
Q 006380 630 LISAIFMKPED 640 (647)
Q Consensus 630 ~l~v~~~~~~~ 640 (647)
.|+|.++.+..
T Consensus 74 ~l~v~~a~~~~ 84 (93)
T 2cqh_A 74 IMEVDYSVSKK 84 (93)
T ss_dssp ECEEEECCCCC
T ss_pred EEEEEEccCcc
Confidence 99999987753
No 289
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=3.9e-13 Score=112.71 Aligned_cols=82 Identities=23% Similarity=0.430 Sum_probs=76.1
Q ss_pred CCCCceEEeccCCccCCHHHHHHHHHh-cCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeec
Q 006380 217 ERDQRTVFAYQMPLKATERDVYEFFSK-AGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAE 295 (647)
Q Consensus 217 ~~~~~~v~i~nlp~~~te~~l~~~f~~-~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (647)
..+..+|||+|||..+|+++|.++|.+ ||.|..|.|+.++ ++.++|||
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~a------------------------------ 54 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYG------------------------------ 54 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEE------------------------------
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceE------------------------------
Confidence 346789999999999999999999999 9999999999998 89999999
Q ss_pred ccceEeecCCccccccCCcccccceeeEEecCCcCHHHHHH-hcCcc-ccCccccCCCChhh
Q 006380 296 VGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA-LSGQL-LLGQPVMVKPSEAE 355 (647)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~-l~g~~-~~g~~l~v~~~~~~ 355 (647)
||+|.+.++|..|+. |+|.. +.|+.|.|.++...
T Consensus 55 --------------------------fV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~ 90 (104)
T 2dhg_A 55 --------------------------FVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPK 90 (104)
T ss_dssp --------------------------EEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCC
T ss_pred --------------------------EEEECCHHHHHHHHHHccCCcccCCEeEEEEEccCC
Confidence 999999999999996 99999 99999999987544
No 290
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.42 E-value=3.5e-13 Score=111.09 Aligned_cols=76 Identities=22% Similarity=0.529 Sum_probs=69.3
Q ss_pred CCCceEEEcCCCC-CCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEE
Q 006380 375 AIDRKLYVGNLHF-NMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 453 (647)
Q Consensus 375 ~~~~~l~v~nLp~-~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~ 453 (647)
++.++|||+|||+ .+++++|+++|++||.|..|.|. +|||||+|.+.++|..|+..|++. .+.|+.|.|.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~V~ 78 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQE-MNFGKKLILE 78 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCS-SCBTTTBCEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCC-eeCCcEEEEE
Confidence 3458999999998 99999999999999999999983 789999999999999999999996 7999999999
Q ss_pred eecCCC
Q 006380 454 SVTDHV 459 (647)
Q Consensus 454 ~~~~~~ 459 (647)
++....
T Consensus 79 ~a~~~~ 84 (96)
T 2kvi_A 79 VSSSNA 84 (96)
T ss_dssp EEECCC
T ss_pred EcCcCC
Confidence 998644
No 291
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=3.1e-13 Score=113.18 Aligned_cols=75 Identities=31% Similarity=0.454 Sum_probs=67.8
Q ss_pred CCceEEE--cCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeee-----CCe
Q 006380 376 IDRKLYV--GNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEI-----VGR 448 (647)
Q Consensus 376 ~~~~l~v--~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~-----~g~ 448 (647)
++.+||| +||++.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|++.|||. .| .|+
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~-~~~~~lg~g~ 96 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGK-EVVDDLGQKI 96 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTC-EEECTTSCEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCC-EEccccCCCc
Confidence 4589999 779999999999999999999999988643 789999999999999999999997 56 689
Q ss_pred EEEEEeecC
Q 006380 449 TLKVSSVTD 457 (647)
Q Consensus 449 ~l~v~~~~~ 457 (647)
+|.|.|+..
T Consensus 97 ~l~v~~a~~ 105 (114)
T 2cq2_A 97 TLYLNFVEK 105 (114)
T ss_dssp ECEEEEESC
T ss_pred EEEEEeccc
Confidence 999999873
No 292
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.42 E-value=2.5e-13 Score=118.93 Aligned_cols=82 Identities=15% Similarity=0.293 Sum_probs=75.8
Q ss_pred CCCCceEEeccCCccCCHHHHHHHHHhcCCcee--EEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeee
Q 006380 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRD--VRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVA 294 (647)
Q Consensus 217 ~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~--v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (647)
....++|||+|||+.+|+++|.++|.+||.|.. |+|+.|+.||.++|||
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~a----------------------------- 70 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFA----------------------------- 70 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCE-----------------------------
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEE-----------------------------
Confidence 456789999999999999999999999999966 9999999999999999
Q ss_pred cccceEeecCCccccccCCcccccceeeEEecCCcCHHHHH-HhcCc----cccCccccCCCChhh
Q 006380 295 EVGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAI-ALSGQ----LLLGQPVMVKPSEAE 355 (647)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al-~l~g~----~~~g~~l~v~~~~~~ 355 (647)
||+|.+. +|..|+ .|+|. .+.|+.|.|.++.+.
T Consensus 71 ---------------------------FV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 71 ---------------------------FIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKGS 108 (131)
T ss_dssp ---------------------------EEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCS
T ss_pred ---------------------------EEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCC
Confidence 9999999 999999 59999 999999999887654
No 293
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.42 E-value=6e-13 Score=118.02 Aligned_cols=80 Identities=13% Similarity=0.247 Sum_probs=72.0
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCHHHHHHHHHHhcCcc
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAMHMRW 625 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~~~A~~A~~~l~g~~ 625 (647)
..+.++|||.|| |..++ +++|.++|+.||.|..|.|..+ ++|+|||+|.+.++|.+|++.|||..
T Consensus 39 ~~~~~~l~V~nL--p~~~~--------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 108 (139)
T 1u6f_A 39 PDVLRNLMVNYI--PTTVD--------EVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFN 108 (139)
T ss_dssp TTTTSEEEEESC--STTCC--------HHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEE
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 456678999999 88887 7999999999999999988644 37899999999999999999999999
Q ss_pred cCCeEEEEEEcChhh
Q 006380 626 FARRLISAIFMKPED 640 (647)
Q Consensus 626 ~~Gr~l~v~~~~~~~ 640 (647)
|.|+.|+|.++.+..
T Consensus 109 ~~g~~l~v~~a~~~~ 123 (139)
T 1u6f_A 109 ILNKRLKVALAASGH 123 (139)
T ss_dssp CSSCEEEEEESSCCC
T ss_pred ECCeEEEEEECCCCC
Confidence 999999999987653
No 294
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=4.5e-13 Score=109.73 Aligned_cols=76 Identities=29% Similarity=0.392 Sum_probs=67.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccCCC-eeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcC-CeeeCCeEEEEE
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEPFGP-VELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG-KLEIVGRTLKVS 453 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~~g~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g-~~~~~g~~l~v~ 453 (647)
..++|||+|||+.+++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+..|++ . .|.|+.|.|.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~-~~~g~~l~v~ 78 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKV-ELHGKIMEVD 78 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTC-EETTEECEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCe-eECCEEEEEE
Confidence 3489999999999999999999999999 6656552 479999999999999999999999 6 6999999999
Q ss_pred eecCCC
Q 006380 454 SVTDHV 459 (647)
Q Consensus 454 ~~~~~~ 459 (647)
++.+..
T Consensus 79 ~a~~~~ 84 (93)
T 2cqh_A 79 YSVSKK 84 (93)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 998654
No 295
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.42 E-value=4e-13 Score=122.81 Aligned_cols=80 Identities=16% Similarity=0.301 Sum_probs=71.5
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCHHHHHHHHHHhcCcc
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAMHMRW 625 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~~~A~~A~~~l~g~~ 625 (647)
..++.+|||.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+.++|.+||..|||..
T Consensus 69 ~~~~~~l~V~nL--p~~~t--------~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 138 (165)
T 1rk8_A 69 SVEGWILFVTSI--HEEAQ--------EDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAE 138 (165)
T ss_dssp CC-CEEEEEESC--CTTCC--------HHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 355678999999 88887 8999999999999999999755 37999999999999999999999999
Q ss_pred cCCeEEEEEEcChhh
Q 006380 626 FARRLISAIFMKPED 640 (647)
Q Consensus 626 ~~Gr~l~v~~~~~~~ 640 (647)
|.|++|.|.|+.+..
T Consensus 139 ~~g~~l~V~~a~~~~ 153 (165)
T 1rk8_A 139 IMGQTIQVDWCFVKG 153 (165)
T ss_dssp ETTEECEEEESEECC
T ss_pred ECCEEEEEEEecCCC
Confidence 999999999986543
No 296
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.42 E-value=2.8e-13 Score=116.39 Aligned_cols=78 Identities=28% Similarity=0.382 Sum_probs=70.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccCCCee--EEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEE
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEPFGPVE--LVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 453 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~--~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~ 453 (647)
...+|||+|||+.+++++|+++|+.| .|. .|.|+.++. |.++|||||+|.+.++|.+||. +++. .|+|+.|.|.
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~-~l~gR~I~V~ 116 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKE-RIGHRYIEVF 116 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTC-CBTTBCCCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCC-EECCEEEEEE
Confidence 35899999999999999999999999 566 899999985 9999999999999999999996 5664 7999999999
Q ss_pred eecC
Q 006380 454 SVTD 457 (647)
Q Consensus 454 ~~~~ 457 (647)
++..
T Consensus 117 ~a~~ 120 (126)
T 2hgm_A 117 KSSQ 120 (126)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8863
No 297
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.42 E-value=3.3e-13 Score=109.25 Aligned_cols=78 Identities=22% Similarity=0.301 Sum_probs=71.4
Q ss_pred CCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCCeEEE
Q 006380 553 PSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLIS 632 (647)
Q Consensus 553 ~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l~ 632 (647)
...+|+|.|| |..++ +++|+++|++| .|..|.|+ .++|+|||+|.+.++|.+|++.|||..|.|+.|+
T Consensus 4 ~~~~l~V~nL--p~~~t--------~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 71 (88)
T 1wg1_A 4 GSSGILVKNL--PQDSN--------CQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLI 71 (88)
T ss_dssp CCCCEEEESC--CSSCC--------HHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCEEEEeCC--CCCCC--------HHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEE
Confidence 4568999999 98888 89999999999 99999886 5789999999999999999999999999999999
Q ss_pred EEEcChhhhh
Q 006380 633 AIFMKPEDYE 642 (647)
Q Consensus 633 v~~~~~~~~~ 642 (647)
|.+++.+.+.
T Consensus 72 V~~a~~~~~~ 81 (88)
T 1wg1_A 72 VQLQPTDALL 81 (88)
T ss_dssp EEECCCCCCC
T ss_pred EEEcCCCceE
Confidence 9999876543
No 298
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.42 E-value=2.3e-13 Score=118.49 Aligned_cols=85 Identities=31% Similarity=0.421 Sum_probs=78.4
Q ss_pred CCCCCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeee
Q 006380 215 DPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVA 294 (647)
Q Consensus 215 ~~~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (647)
....+.++|||+|||+.+|+++|.++|.+||.|..|.|+.++.++.++|||
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~a----------------------------- 91 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFA----------------------------- 91 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEE-----------------------------
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEE-----------------------------
Confidence 334567999999999999999999999999999999999999999999999
Q ss_pred cccceEeecCCccccccCCcccccceeeEEecCCcCHHHHHH-hcCccccCccccCCCChhh
Q 006380 295 EVGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAE 355 (647)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~-l~g~~~~g~~l~v~~~~~~ 355 (647)
||+|.+.++|..|+. |+|..+.|+.|.|.++...
T Consensus 92 ---------------------------fV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~ 126 (129)
T 2kxn_B 92 ---------------------------FVYFENVDDAKEAKERANGMELDGRRIRVDFSITK 126 (129)
T ss_dssp ---------------------------EEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSSS
T ss_pred ---------------------------EEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 999999999999996 9999999999999887543
No 299
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=4.1e-13 Score=114.98 Aligned_cols=84 Identities=18% Similarity=0.361 Sum_probs=76.9
Q ss_pred CCCCCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeee
Q 006380 215 DPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVA 294 (647)
Q Consensus 215 ~~~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (647)
......++|||+|||+.+|+++|.++|.+||.|..|.|+.++.++.++|||
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~a----------------------------- 62 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYG----------------------------- 62 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEE-----------------------------
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEE-----------------------------
Confidence 345678999999999999999999999999999999999999999999999
Q ss_pred cccceEeecCCccccccCCcccccceeeEEecCCcCHHHHHH-hcCccccCccccCCCChhh
Q 006380 295 EVGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAE 355 (647)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~-l~g~~~~g~~l~v~~~~~~ 355 (647)
||+|.+.++|..|+. +++ .+.|+.|.|.++...
T Consensus 63 ---------------------------fV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~~ 96 (116)
T 2cqd_A 63 ---------------------------FVTMADRAAAERACKDPNP-IIDGRKANVNLAYLG 96 (116)
T ss_dssp ---------------------------EEEESSHHHHHHHHTCSSC-EETTEECEEEESTTT
T ss_pred ---------------------------EEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcccC
Confidence 999999999999996 676 899999999887543
No 300
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.3e-13 Score=110.95 Aligned_cols=79 Identities=16% Similarity=0.326 Sum_probs=74.7
Q ss_pred CCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeeccc
Q 006380 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVG 297 (647)
Q Consensus 218 ~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (647)
.+.++|||+|||+.+|+++|.++|++||.|..+.|+.++.++.++|||
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~a-------------------------------- 50 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYG-------------------------------- 50 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEE--------------------------------
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEE--------------------------------
Confidence 467899999999999999999999999999999999999999999999
Q ss_pred ceEeecCCccccccCCcccccceeeEEecCCcCHHHHHH-hcCccccCccccCCCC
Q 006380 298 MVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPS 352 (647)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~-l~g~~~~g~~l~v~~~ 352 (647)
||+|.+.++|..|+. |||..+.|+.+.+.++
T Consensus 51 ------------------------fV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 51 ------------------------FVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp ------------------------EEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred ------------------------EEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 999999999999995 9999999999998765
No 301
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=5.4e-13 Score=114.07 Aligned_cols=80 Identities=20% Similarity=0.278 Sum_probs=70.3
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCe----EEEEEe-cCCCceEEEEeCCHHHHHHHHHHhcCcc
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRV----KHIYVD-KRSAGFVYLRFESTEAAASAQRAMHMRW 625 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v----~~v~l~-~~~~g~afV~F~~~~~A~~A~~~l~g~~ 625 (647)
..++++|||.|| |..++ +++|.++|++||.| ..+.+. ..++|+|||+|.+.++|.+|+..|||..
T Consensus 22 ~~~~~~l~V~nL--p~~~t--------~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~ 91 (115)
T 2cpx_A 22 GEPNKVLYLKNL--SPRVT--------ERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYK 91 (115)
T ss_dssp CSCCSEEEEECC--CTTCC--------HHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCB
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCE
Confidence 456789999999 88887 79999999999998 555543 4468999999999999999999999999
Q ss_pred cCCeEEEEEEcChhh
Q 006380 626 FARRLISAIFMKPED 640 (647)
Q Consensus 626 ~~Gr~l~v~~~~~~~ 640 (647)
|.|+.|.|.|+.+..
T Consensus 92 ~~g~~l~v~~a~~~~ 106 (115)
T 2cpx_A 92 LYGKILVIEFGKNKK 106 (115)
T ss_dssp CSSCBCEEEECCCCS
T ss_pred eCCcEEEEEEccCCC
Confidence 999999999987754
No 302
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.41 E-value=2.1e-13 Score=112.93 Aligned_cols=77 Identities=17% Similarity=0.176 Sum_probs=67.6
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEec-----CCCceEEEEeCCHHHHHHHHHHhcCccc
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDK-----RSAGFVYLRFESTEAAASAQRAMHMRWF 626 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~-----~~~g~afV~F~~~~~A~~A~~~l~g~~~ 626 (647)
....+|+|.|| |..++ +++|+++|.+||.|..+.+.. .++|+|||+|.+.++|.+|++.|||..|
T Consensus 13 ~~~~~l~v~nL--p~~~t--------~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~ 82 (98)
T 2cqp_A 13 PGPTIIKVQNM--PFTVS--------IDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI 82 (98)
T ss_dssp CSSEEEEEESC--CTTCC--------HHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEE
T ss_pred CCCCEEEEeCC--CCCCC--------HHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCee
Confidence 45578999999 98888 899999999999998654432 2479999999999999999999999999
Q ss_pred CCeEEEEEEcCh
Q 006380 627 ARRLISAIFMKP 638 (647)
Q Consensus 627 ~Gr~l~v~~~~~ 638 (647)
.|+.|+|.++..
T Consensus 83 ~g~~l~V~~a~~ 94 (98)
T 2cqp_A 83 GSRKVKLVLGSG 94 (98)
T ss_dssp TTEECEEEESSC
T ss_pred CCeEEEEEEcCC
Confidence 999999999864
No 303
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.41 E-value=2.2e-13 Score=114.71 Aligned_cols=83 Identities=22% Similarity=0.266 Sum_probs=77.0
Q ss_pred CCCCceEEeccCCccCCHHHHHHHHHhcCC---ceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeee
Q 006380 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGK---VRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLV 293 (647)
Q Consensus 217 ~~~~~~v~i~nlp~~~te~~l~~~f~~~G~---v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (647)
.....+|||+|||+.+|+++|.++|.+||. |..|.|+.++. |.++|||
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~a---------------------------- 58 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDA---------------------------- 58 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEE----------------------------
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEE----------------------------
Confidence 456789999999999999999999999998 89999999988 9999999
Q ss_pred ecccceEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCChhhh
Q 006380 294 AEVGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEK 356 (647)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~~~~ 356 (647)
||+|.+.++|..||.+++..+.|+.|.|.++....
T Consensus 59 ----------------------------fV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~~~ 93 (107)
T 2lmi_A 59 ----------------------------LIEMESEQDVQKALEKHRMYMGQRYVEVYEINNED 93 (107)
T ss_dssp ----------------------------EEEBSSHHHHHHHHTTTTCCSSSSCCCCEECCHHH
T ss_pred ----------------------------EEEECCHHHHHHHHHhCcceeCCeEEEEEECCHHH
Confidence 99999999999999999999999999998876554
No 304
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.41 E-value=1.7e-13 Score=112.86 Aligned_cols=77 Identities=17% Similarity=0.142 Sum_probs=66.5
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEec-----CCCceEEEEeCCHHHHHHHHHHhcCccc
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDK-----RSAGFVYLRFESTEAAASAQRAMHMRWF 626 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~-----~~~g~afV~F~~~~~A~~A~~~l~g~~~ 626 (647)
++..+|+|.|| |..++ +++|.++|++||.|..+.+.. .++|+|||+|.+.++|.+|++.|||..|
T Consensus 13 ~~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~ 82 (95)
T 2ek1_A 13 PGPTVIKVQNM--PFTVS--------IDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI 82 (95)
T ss_dssp --CEEEEEECC--CTTCC--------HHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeE
Confidence 44578999999 98888 899999999999998765543 2479999999999999999999999999
Q ss_pred CCeEEEEEEcCh
Q 006380 627 ARRLISAIFMKP 638 (647)
Q Consensus 627 ~Gr~l~v~~~~~ 638 (647)
.|+.|.|.+++.
T Consensus 83 ~gr~l~v~~a~s 94 (95)
T 2ek1_A 83 GSRKVKLSGPSS 94 (95)
T ss_dssp TTEECEEECCC-
T ss_pred CCcEEEEEeccC
Confidence 999999998763
No 305
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.12 E-value=2e-14 Score=123.24 Aligned_cols=83 Identities=33% Similarity=0.418 Sum_probs=77.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccCCCeeE--------EEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCC
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEPFGPVEL--------VQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG 447 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g 447 (647)
+.++|||+|||..+++++|+++|+.||.|.. |.|+.++.++.++|||||+|.+.++|.+||..|++. .|.|
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g 84 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK-EFSG 84 (116)
Confidence 3489999999999999999999999999998 899998878999999999999999999999999995 7999
Q ss_pred eEEEEEeecCCC
Q 006380 448 RTLKVSSVTDHV 459 (647)
Q Consensus 448 ~~l~v~~~~~~~ 459 (647)
+.|.|.++.+..
T Consensus 85 ~~l~V~~a~~~~ 96 (116)
T 2lcw_A 85 NPIKVSFATRRA 96 (116)
Confidence 999999998543
No 306
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.41 E-value=6.6e-13 Score=120.23 Aligned_cols=78 Identities=23% Similarity=0.291 Sum_probs=71.2
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCHHHHHHHHHHhcCccc
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAMHMRWF 626 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~~~A~~A~~~l~g~~~ 626 (647)
.+.++|||.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+.++|.+|++.|||..|
T Consensus 37 ~~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 106 (156)
T 1h2v_Z 37 KKSCTLYVGNL--SFYTT--------EEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRL 106 (156)
T ss_dssp TTCCEEEEESC--CTTCC--------HHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEE
T ss_pred CCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 45679999999 98887 8999999999999999999654 468999999999999999999999999
Q ss_pred CCeEEEEEEcChh
Q 006380 627 ARRLISAIFMKPE 639 (647)
Q Consensus 627 ~Gr~l~v~~~~~~ 639 (647)
.|+.|+|.|+.+.
T Consensus 107 ~g~~l~V~~a~~~ 119 (156)
T 1h2v_Z 107 DDRIIRTDWDAGF 119 (156)
T ss_dssp TTEECEEEEESCC
T ss_pred CCeEEEEEECCCC
Confidence 9999999999764
No 307
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=7e-13 Score=109.32 Aligned_cols=79 Identities=15% Similarity=0.195 Sum_probs=70.3
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEE-EEecC-CCceEEEEeCCHHHHHHHHHHhcCcccCCe
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHI-YVDKR-SAGFVYLRFESTEAAASAQRAMHMRWFARR 629 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v-~l~~~-~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr 629 (647)
..+.+|||.|| |..++ +++|.++|++||.|..| .|..+ ..|.|||+|.+.++|.+|+..|||..|.|+
T Consensus 13 ~~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~ 82 (96)
T 2e44_A 13 QRIRKLQIRNI--PPHLQ--------WEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENF 82 (96)
T ss_dssp CSCCCEEEEEE--CSSSC--------HHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSC
T ss_pred CCCCEEEEEcC--CCCCC--------HHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 34568999999 98888 79999999999999999 46554 356699999999999999999999999999
Q ss_pred EEEEEEcChhh
Q 006380 630 LISAIFMKPED 640 (647)
Q Consensus 630 ~l~v~~~~~~~ 640 (647)
.|.|.++.+.+
T Consensus 83 ~l~V~~a~~~~ 93 (96)
T 2e44_A 83 TLKVAYIPDEM 93 (96)
T ss_dssp BCEEEECCCCC
T ss_pred EEEEEEcCccc
Confidence 99999999874
No 308
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.40 E-value=1.1e-12 Score=116.61 Aligned_cols=76 Identities=18% Similarity=0.274 Sum_probs=69.0
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCHHHHHHHHHHhcCcc
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAMHMRW 625 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~~~A~~A~~~l~g~~ 625 (647)
..+.++|||.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+.++|.+|++.|||..
T Consensus 60 ~~~~~~l~v~nl--p~~~~--------~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 129 (140)
T 2ku7_A 60 ATTKRVLYVGGL--AEEVD--------DKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE 129 (140)
T ss_dssp CSSCCEEEEECC--CTTCC--------HHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEE
T ss_pred CCCCcEEEEEeC--CCCCC--------HHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCE
Confidence 356678999999 98887 7999999999999999999654 58999999999999999999999999
Q ss_pred cCCeEEEEEEc
Q 006380 626 FARRLISAIFM 636 (647)
Q Consensus 626 ~~Gr~l~v~~~ 636 (647)
|.|+.|+|.|+
T Consensus 130 ~~g~~l~v~~A 140 (140)
T 2ku7_A 130 LFGRTIRVNLA 140 (140)
T ss_dssp ETTEEEEEEC-
T ss_pred ECCEEEEEEeC
Confidence 99999999985
No 309
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=2.2e-13 Score=113.41 Aligned_cols=80 Identities=23% Similarity=0.271 Sum_probs=73.1
Q ss_pred CCCCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeec
Q 006380 216 PERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAE 295 (647)
Q Consensus 216 ~~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (647)
......+|||+|||+.+|+++|.++|.+||. +.|.|+.++ +++++|||
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~a------------------------------ 58 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEA------------------------------ 58 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEE------------------------------
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEE------------------------------
Confidence 3456789999999999999999999999995 499999998 89999999
Q ss_pred ccceEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCCh
Q 006380 296 VGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSE 353 (647)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~ 353 (647)
||+|.+.++|.+||.+++..+.|+.|.|.++.
T Consensus 59 --------------------------fV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 59 --------------------------DVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp --------------------------EEECSSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred --------------------------EEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 99999999999999999999999999987653
No 310
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1.5e-12 Score=107.44 Aligned_cols=78 Identities=12% Similarity=0.141 Sum_probs=69.5
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCCeEE
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLI 631 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l 631 (647)
.+.++|||.|+ .++ +++|.++|++||.|..|.|. .++|+|||+|.+.++|.+|+..|||..|.|+.|
T Consensus 13 ~~~~~l~V~n~----~~t--------~~~l~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 79 (97)
T 1x5p_A 13 RKGNTLYVYGE----DMT--------PTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQL 79 (97)
T ss_dssp CCCSEEEEECS----SCC--------HHHHHHHHTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCEEEEcCC----CCC--------HHHHHHHHhhCCCEEEEEec-CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 45678999996 344 79999999999999999996 578999999999999999999999999999999
Q ss_pred EEEEcChhhhh
Q 006380 632 SAIFMKPEDYE 642 (647)
Q Consensus 632 ~v~~~~~~~~~ 642 (647)
+|.|+.+....
T Consensus 80 ~v~~a~~~~~~ 90 (97)
T 1x5p_A 80 KVNIARKQPML 90 (97)
T ss_dssp EEECCSSCCCC
T ss_pred EEEECCCCCCC
Confidence 99999876543
No 311
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.40 E-value=2.5e-13 Score=116.42 Aligned_cols=83 Identities=20% Similarity=0.247 Sum_probs=76.6
Q ss_pred CCCCceEEeccCCccCCHHHHHHHHHhcCC---ceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeee
Q 006380 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGK---VRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLV 293 (647)
Q Consensus 217 ~~~~~~v~i~nlp~~~te~~l~~~f~~~G~---v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (647)
.....+|||+|||+.+|+++|.++|.+||. |..|.|+.++. |+++|||
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~a---------------------------- 64 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEA---------------------------- 64 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEE----------------------------
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEE----------------------------
Confidence 456789999999999999999999999999 89999999987 9999999
Q ss_pred ecccceEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCChhhh
Q 006380 294 AEVGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEK 356 (647)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~~~~ 356 (647)
||+|.+.++|.+||.++|..+.|+.|.|.++....
T Consensus 65 ----------------------------fV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~~~ 99 (118)
T 2db1_A 65 ----------------------------FVELESEDDVKLALKKDRESMGHRYIEVFKSHRTE 99 (118)
T ss_dssp ----------------------------EEEBSSHHHHHHHGGGTTEEETTEEEEEEEECHHH
T ss_pred ----------------------------EEEECCHHHHHHHHhcCCCeECCeEEEEEECCHHH
Confidence 99999999999999999999999999998875544
No 312
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.39 E-value=9e-13 Score=111.24 Aligned_cols=79 Identities=19% Similarity=0.270 Sum_probs=68.0
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCHHHHHHHHHHhcCcc
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAMHMRW 625 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~~~A~~A~~~l~g~~ 625 (647)
..+.++|||.|| |..++ +++|.++|+.||.|..|.|..+ ++|+|||+|.+.++|.+|+..+ |..
T Consensus 22 ~~~~~~lfV~nL--p~~~t--------e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~ 90 (109)
T 2rs2_A 22 GSSGCKMFIGGL--SWQTT--------QEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHE 90 (109)
T ss_dssp ----CCEEEESC--CTTCC--------HHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEE
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCc
Confidence 355678999999 88888 8999999999999999999654 4899999999999999999986 599
Q ss_pred cCCeEEEEEEcChhh
Q 006380 626 FARRLISAIFMKPED 640 (647)
Q Consensus 626 ~~Gr~l~v~~~~~~~ 640 (647)
|.|+.|.|.++.+..
T Consensus 91 l~g~~l~V~~a~~~~ 105 (109)
T 2rs2_A 91 LDSKTIDPKVAFPRR 105 (109)
T ss_dssp ETTEEEEEEECCCCC
T ss_pred CCCEEEEEEEccCCC
Confidence 999999999987653
No 313
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=6.7e-13 Score=112.28 Aligned_cols=79 Identities=27% Similarity=0.380 Sum_probs=70.8
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCC-eEEEEEe-c-----CCCceEEEEeCCHHHHHHHHHHhc--
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGR-VKHIYVD-K-----RSAGFVYLRFESTEAAASAQRAMH-- 622 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~-v~~v~l~-~-----~~~g~afV~F~~~~~A~~A~~~l~-- 622 (647)
.+.++|||.|| |..++ +++|.++|.+||. |..|.|. . .++|+|||+|.+.++|.+|+..|+
T Consensus 6 ~~~~~l~V~nL--p~~~t--------~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g 75 (109)
T 2dis_A 6 SGNCRLFIGGI--PKMKK--------REEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPG 75 (109)
T ss_dssp CCSEEEEEECC--CTTSC--------HHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTC
T ss_pred cCCCEEEEeCC--CCcCC--------HHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCC
Confidence 45678999999 88887 7999999999998 9999887 2 368999999999999999999996
Q ss_pred CcccCCeEEEEEEcChhh
Q 006380 623 MRWFARRLISAIFMKPED 640 (647)
Q Consensus 623 g~~~~Gr~l~v~~~~~~~ 640 (647)
+..|.|+.|+|.|+.+..
T Consensus 76 ~~~~~g~~l~V~~a~~~~ 93 (109)
T 2dis_A 76 RIQLWGHQIAVDWAEPEI 93 (109)
T ss_dssp CSCBTTBCCEEEESCSSC
T ss_pred CceecCCeEEEEEcCCCC
Confidence 599999999999998764
No 314
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=5.6e-13 Score=114.15 Aligned_cols=78 Identities=15% Similarity=0.241 Sum_probs=70.3
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC-----CCceEEEEeCCHHHHHHHHHHhcCccc
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR-----SAGFVYLRFESTEAAASAQRAMHMRWF 626 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~-----~~g~afV~F~~~~~A~~A~~~l~g~~~ 626 (647)
.+.++|||.|| |..++ +++|+++|.+||.|..|.|..+ ++|+|||+|.+.++|.+|+.. +|..|
T Consensus 25 ~~~~~l~V~nL--p~~~t--------e~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~ 93 (116)
T 1x4b_A 25 EQFRKLFIGGL--SFETT--------EESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSI 93 (116)
T ss_dssp HHHTEEEEECC--TTCCC--------HHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEE
T ss_pred CCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEE
Confidence 34578999999 98888 7999999999999999998754 479999999999999999998 99999
Q ss_pred CCeEEEEEEcChhh
Q 006380 627 ARRLISAIFMKPED 640 (647)
Q Consensus 627 ~Gr~l~v~~~~~~~ 640 (647)
.|+.|.|.++.+..
T Consensus 94 ~g~~l~V~~a~~~~ 107 (116)
T 1x4b_A 94 DGRVVEPKRAVARE 107 (116)
T ss_dssp TTEEEEEECCSSCC
T ss_pred CCEEEEEEECCCCc
Confidence 99999999987754
No 315
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.39 E-value=5.4e-13 Score=110.01 Aligned_cols=78 Identities=19% Similarity=0.253 Sum_probs=69.3
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCCeEE
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLI 631 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l 631 (647)
.+.++|||.|| |..++ +++|.++|++||.|..|.....++|+|||+|.+.++|.+|+..|||..|.|+.|
T Consensus 14 ~~~~~l~V~nL--~~~~t--------~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 83 (96)
T 1fjc_A 14 RAARTLLAKNL--SFNIT--------EDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSV 83 (96)
T ss_dssp TGGGEEEEESC--CSSCC--------HHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEE
T ss_pred CCCCEEEEeCC--CCCCC--------HHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 45678999999 98888 799999999999998883333458999999999999999999999999999999
Q ss_pred EEEEcChh
Q 006380 632 SAIFMKPE 639 (647)
Q Consensus 632 ~v~~~~~~ 639 (647)
.|.++.+.
T Consensus 84 ~v~~a~~~ 91 (96)
T 1fjc_A 84 SLYYTGEK 91 (96)
T ss_dssp EEEECSSS
T ss_pred EEEEcCCC
Confidence 99998764
No 316
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=3.2e-13 Score=113.05 Aligned_cols=82 Identities=17% Similarity=0.228 Sum_probs=74.6
Q ss_pred CCCCCceEEeccCCccCCHHHHHHHHHhcCCcee-EEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeee
Q 006380 216 PERDQRTVFAYQMPLKATERDVYEFFSKAGKVRD-VRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVA 294 (647)
Q Consensus 216 ~~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~-v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (647)
......+|||+|||+.+|+++|.++|.+||.|.. |.|+.+ .+|+++|||
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~a----------------------------- 60 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEA----------------------------- 60 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEE-----------------------------
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEE-----------------------------
Confidence 3456789999999999999999999999999987 888888 789999999
Q ss_pred cccceEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCChh
Q 006380 295 EVGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEA 354 (647)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~~ 354 (647)
||+|.+.++|..||.+++..+.|+.|.|.++..
T Consensus 61 ---------------------------fV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~~ 93 (104)
T 1wg5_A 61 ---------------------------FVQFASQEIAEKALKKHKERIGHRYIEIFKSSR 93 (104)
T ss_dssp ---------------------------EEEESSHHHHHHHHTTTTCCSSSSCCEEEEECT
T ss_pred ---------------------------EEEECCHHHHHHHHHhCcchhCCcEEEEEECCH
Confidence 999999999999998899999999999977643
No 317
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.39 E-value=1.6e-12 Score=105.11 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=68.6
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
.++|||+|||+.+++++|+++|++| .|..|.|. .++|||||+|.+.++|.+|+..|+|. .+.|+.|.|.++.
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~-~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQY-SFRGKDLIVQLQP 76 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTE-EETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCC-eECCcEEEEEEcC
Confidence 4899999999999999999999999 99999884 46899999999999999999999995 8999999999987
Q ss_pred CCC
Q 006380 457 DHV 459 (647)
Q Consensus 457 ~~~ 459 (647)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 533
No 318
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=3.7e-13 Score=114.73 Aligned_cols=84 Identities=18% Similarity=0.386 Sum_probs=77.6
Q ss_pred CCCCCceEEeccCCccCCHHHHHHHHHhcCCce--------eEEEeecCCCCCccceeeeeeeccCccccccccccCcee
Q 006380 216 PERDQRTVFAYQMPLKATERDVYEFFSKAGKVR--------DVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCV 287 (647)
Q Consensus 216 ~~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~--------~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~ 287 (647)
.....++|||+|||+.+|+++|.++|.+||.|. .|.|+.++.++.++|||
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~a---------------------- 68 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDA---------------------- 68 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEE----------------------
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEE----------------------
Confidence 345779999999999999999999999999999 69999999999999999
Q ss_pred eeeeeeecccceEeecCCccccccCCcccccceeeEEecCCcCHHHHHH-hcCccccCccccCCCChhh
Q 006380 288 IKFFLVAEVGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAE 355 (647)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~-l~g~~~~g~~l~v~~~~~~ 355 (647)
||+|.+.++|..|+. |+|..+.|+.|.|.++...
T Consensus 69 ----------------------------------fV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (113)
T 2cpe_A 69 ----------------------------------TVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKK 103 (113)
T ss_dssp ----------------------------------EEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCC
T ss_pred ----------------------------------EEEECCHHHHHHHHHHcCCCccCCCEEEEEECCCC
Confidence 999999999999996 9999999999999887654
No 319
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=1e-12 Score=109.46 Aligned_cols=80 Identities=24% Similarity=0.294 Sum_probs=68.0
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEE-ecCCCceEEEEeCCHHHHHHHHHHhcCcccCCe
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYV-DKRSAGFVYLRFESTEAAASAQRAMHMRWFARR 629 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l-~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr 629 (647)
..+.++|||.|| |..++ +++|+++|++||.|.-+.. ...++|+|||+|.+.++|.+|+..|||..|.|+
T Consensus 12 ~~~~~~l~V~nL--p~~~t--------~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 81 (101)
T 2fc9_A 12 SGESKTLVLSNL--SYSAT--------EETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGR 81 (101)
T ss_dssp SCCCSEEEEESC--CTTCC--------HHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTE
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCe
Confidence 356689999999 98888 8999999999998832221 122589999999999999999999999999999
Q ss_pred EEEEEEcChhh
Q 006380 630 LISAIFMKPED 640 (647)
Q Consensus 630 ~l~v~~~~~~~ 640 (647)
.|+|.|+.+..
T Consensus 82 ~l~v~~a~~~~ 92 (101)
T 2fc9_A 82 AIRLELQGPRG 92 (101)
T ss_dssp EEEEEECSSCC
T ss_pred EEEEEEcCCCC
Confidence 99999998764
No 320
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=1.9e-13 Score=118.55 Aligned_cols=85 Identities=22% Similarity=0.368 Sum_probs=77.6
Q ss_pred CCCCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeec
Q 006380 216 PERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAE 295 (647)
Q Consensus 216 ~~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (647)
+.....+|||+|||+.+|+++|.++|.+||.|..+.++.+..+|.++|||
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~a------------------------------ 70 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEG------------------------------ 70 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEE------------------------------
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEE------------------------------
Confidence 34567899999999999999999999999999998888888899999999
Q ss_pred ccceEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCChhhh
Q 006380 296 VGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEK 356 (647)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~~~~ 356 (647)
||+|.+.++|..||.|+|..|.|+.|.|.++....
T Consensus 71 --------------------------fV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~~~ 105 (124)
T 1wel_A 71 --------------------------FVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKG 105 (124)
T ss_dssp --------------------------EEEBSSSHHHHHHHTSCSBCSTTSCBEEEEECHHH
T ss_pred --------------------------EEEECCHHHHHHHHHhCCCeECCcEEEEEECCHHH
Confidence 99999999999999999999999999998876544
No 321
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=5.2e-13 Score=111.66 Aligned_cols=83 Identities=23% Similarity=0.387 Sum_probs=76.4
Q ss_pred CCCCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeec
Q 006380 216 PERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAE 295 (647)
Q Consensus 216 ~~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (647)
...+.++|||+|||+.+|+++|.++|.+||.|..|.|+.++.++.++|||
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~a------------------------------ 60 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFG------------------------------ 60 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEE------------------------------
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceE------------------------------
Confidence 34567899999999999999999999999999999999999999999999
Q ss_pred ccceEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCChhh
Q 006380 296 VGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAE 355 (647)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~~~ 355 (647)
||+|.+.++|..|+. ++..+.|+.|.|.++...
T Consensus 61 --------------------------fV~f~~~~~a~~A~~-~~~~~~g~~l~v~~a~~~ 93 (103)
T 2cqg_A 61 --------------------------FVRFTEYETQVKVMS-QRHMIDGRWCDCKLPNSK 93 (103)
T ss_dssp --------------------------EEEESSHHHHHHHHH-SCEEETTEEEEEECCCTT
T ss_pred --------------------------EEEECCHHHHHHHHH-cCCeeCCeEEEEEecCCC
Confidence 999999999999998 578899999999887654
No 322
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.39 E-value=2e-12 Score=104.64 Aligned_cols=74 Identities=31% Similarity=0.503 Sum_probs=63.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCC-eeeCCeEEEEEe
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGK-LEIVGRTLKVSS 454 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~-~~~~g~~l~v~~ 454 (647)
+..+|||+|||+.+++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|.+ +++. +.+.|+.|.|.+
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISN 80 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEE
Confidence 4589999999999999999999999999999999875 59999999999999984 4443 456799999999
Q ss_pred ecCC
Q 006380 455 VTDH 458 (647)
Q Consensus 455 ~~~~ 458 (647)
+.+.
T Consensus 81 a~~k 84 (89)
T 3d2w_A 81 AEPK 84 (89)
T ss_dssp CC--
T ss_pred cCCC
Confidence 8754
No 323
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=4.2e-12 Score=104.77 Aligned_cols=75 Identities=31% Similarity=0.462 Sum_probs=68.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEee
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 455 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~ 455 (647)
+.++|||+|| .+++++|+++|++||.|..|.|. .++|||||+|.+.++|.+||..|++. .|.|+.|.|.|+
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~-~~~g~~l~v~~a 84 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGT-QVESVQLKVNIA 84 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTE-EETTEEEEEECC
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCC-eECCeEEEEEEC
Confidence 4589999996 89999999999999999999985 34899999999999999999999995 799999999999
Q ss_pred cCCC
Q 006380 456 TDHV 459 (647)
Q Consensus 456 ~~~~ 459 (647)
.+..
T Consensus 85 ~~~~ 88 (97)
T 1x5p_A 85 RKQP 88 (97)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8644
No 324
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.38 E-value=2.2e-13 Score=110.83 Aligned_cols=78 Identities=33% Similarity=0.585 Sum_probs=71.9
Q ss_pred ceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecccceE
Q 006380 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVGMVF 300 (647)
Q Consensus 221 ~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (647)
++|||+|||..+|+++|.++|++||.|..|.++.++.+|.++|||
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~a----------------------------------- 46 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFG----------------------------------- 46 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEE-----------------------------------
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEE-----------------------------------
Confidence 589999999999999999999999999999999999999999999
Q ss_pred eecCCccccccCCcccccceeeEEecCCcCHHHHHH-hcCccccCccccCCCChhh
Q 006380 301 FLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAE 355 (647)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~-l~g~~~~g~~l~v~~~~~~ 355 (647)
||+|.+.+ |..|+. |+|..+.|+.|.|.++...
T Consensus 47 ---------------------fV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 47 ---------------------FVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp ---------------------EEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred ---------------------EEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 99999999 999995 9999999999999887654
No 325
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.38 E-value=3.3e-13 Score=121.51 Aligned_cols=81 Identities=21% Similarity=0.355 Sum_probs=75.0
Q ss_pred CCceEEeccCCccCCHHHHHHHHHhcC--CceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecc
Q 006380 219 DQRTVFAYQMPLKATERDVYEFFSKAG--KVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEV 296 (647)
Q Consensus 219 ~~~~v~i~nlp~~~te~~l~~~f~~~G--~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (647)
..++|||+|||+.+|+++|.++|.+|| .|..|.|+.|+.+|.++|||
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfa------------------------------- 102 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYA------------------------------- 102 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEE-------------------------------
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEE-------------------------------
Confidence 468999999999999999999999999 89999999999999999999
Q ss_pred cceEeecCCccccccCCcccccceeeEEecCCcCHHHHHH-hcCccccCccccCCCChhh
Q 006380 297 GMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAE 355 (647)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~-l~g~~~~g~~l~v~~~~~~ 355 (647)
||+|.+.++|..|+. |+|..+.|+.|.|.++...
T Consensus 103 -------------------------FV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~~ 137 (156)
T 3n9u_C 103 -------------------------EVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQ 137 (156)
T ss_dssp -------------------------EEEESCHHHHHHHHHHSTTCEETTEECEEEECCHH
T ss_pred -------------------------EEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCCC
Confidence 999999999999995 7999999999999887543
No 326
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=1.4e-12 Score=109.49 Aligned_cols=78 Identities=17% Similarity=0.178 Sum_probs=70.8
Q ss_pred CceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC----CCceEEEEeCCHHHHHHHHHHhcCcccCCe
Q 006380 554 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR----SAGFVYLRFESTEAAASAQRAMHMRWFARR 629 (647)
Q Consensus 554 ~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~----~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr 629 (647)
..+|+|.|| |..++ +++|+++|++| .|..|.|..+ ++|+|||+|.+.++|.+|+ .|||..|+|+
T Consensus 16 ~~~v~V~nL--p~~~t--------e~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr 83 (109)
T 2dnn_A 16 DLYVSVHGM--PFSAM--------ENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQR 83 (109)
T ss_dssp HHEEEEECC--CSSCC--------HHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTE
T ss_pred CCEEEEeCC--CCCCC--------HHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCe
Confidence 458999999 99888 89999999999 8999988643 5899999999999999999 6999999999
Q ss_pred EEEEEEcChhhhhh
Q 006380 630 LISAIFMKPEDYEA 643 (647)
Q Consensus 630 ~l~v~~~~~~~~~~ 643 (647)
.|.|..+.+.+|..
T Consensus 84 ~i~V~~a~~~~~~~ 97 (109)
T 2dnn_A 84 YVEVSPATERQWVA 97 (109)
T ss_dssp EEEEEECCHHHHHH
T ss_pred EEEEEECCccchhh
Confidence 99999999988754
No 327
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.38 E-value=1e-12 Score=117.04 Aligned_cols=84 Identities=21% Similarity=0.354 Sum_probs=71.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccCCCeeEEE--eccC---CCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeE
Q 006380 375 AIDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQ--LPLD---IETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRT 449 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~--i~~~---~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~ 449 (647)
.++++|||+|||+.+++++|+++|+.||.|..+. ++.+ ..++.++|||||+|.+.++|.+||..|||. .|.|+.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~-~~~g~~ 121 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGY-VLFGKP 121 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTB-EETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCC-EeCCcE
Confidence 3458999999999999999999999999987641 1111 137889999999999999999999999995 799999
Q ss_pred EEEEeecCCC
Q 006380 450 LKVSSVTDHV 459 (647)
Q Consensus 450 l~v~~~~~~~ 459 (647)
|.|.|+....
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999997543
No 328
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=2e-12 Score=106.10 Aligned_cols=76 Identities=25% Similarity=0.422 Sum_probs=66.8
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
.++|||+|||+.+++++|+++|+.||.|..| +.+..++. ||||+|.+.++|.+||. |++. .|+|+.|.|.++.
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~-~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQH-SLGGHRLRVRPRE 80 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCC-EETTEECCCBCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCe-EECCEEEEEEECC
Confidence 3799999999999999999999999999987 44443554 99999999999999998 9995 7999999999887
Q ss_pred CCC
Q 006380 457 DHV 459 (647)
Q Consensus 457 ~~~ 459 (647)
+..
T Consensus 81 ~~~ 83 (94)
T 2e5g_A 81 QKE 83 (94)
T ss_dssp CSC
T ss_pred cCC
Confidence 543
No 329
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.37 E-value=7.6e-13 Score=112.89 Aligned_cols=74 Identities=18% Similarity=0.203 Sum_probs=65.0
Q ss_pred CCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCCeE--
Q 006380 553 PSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRL-- 630 (647)
Q Consensus 553 ~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~-- 630 (647)
...+|||.|| |..++ +++|+++|++||.|..|.|..+ |+|||+|.+.++|.+||+.|||..|.|+.
T Consensus 15 ~~~~l~V~nL--p~~~t--------~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~ 82 (115)
T 3beg_B 15 SENRVVVSGL--PPSGS--------WQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 82 (115)
T ss_dssp --CCEEEEEC--CSSCC--------TTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSC
T ss_pred CCcEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEee
Confidence 3467999999 88887 6999999999999999999866 99999999999999999999999999999
Q ss_pred ---EEEEEcCh
Q 006380 631 ---ISAIFMKP 638 (647)
Q Consensus 631 ---l~v~~~~~ 638 (647)
|+|....+
T Consensus 83 ~~~i~v~~~~~ 93 (115)
T 3beg_B 83 TAYIRVKVDGP 93 (115)
T ss_dssp CCBCEEEECC-
T ss_pred eEEEEeccCCC
Confidence 66666544
No 330
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1.4e-12 Score=111.08 Aligned_cols=76 Identities=28% Similarity=0.420 Sum_probs=67.7
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCC---CCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEE
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIET---GQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVS 453 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~ 453 (647)
.++|||+|||+.+++++|+++|++||.|. +.++.+..+ |.++|||||+|.+.++|.+||+.|++ ++|+.|.+.
T Consensus 8 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~---~~G~~~~~~ 83 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE---EDGKLYLCV 83 (114)
T ss_dssp CCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE---ETTEEEEEE
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh---cCCcEEEec
Confidence 48999999999999999999999999999 888888766 78999999999999999999998853 788888776
Q ss_pred eec
Q 006380 454 SVT 456 (647)
Q Consensus 454 ~~~ 456 (647)
.+.
T Consensus 84 ~~~ 86 (114)
T 2dnl_A 84 SSP 86 (114)
T ss_dssp CCS
T ss_pred cCC
Confidence 544
No 331
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=1.6e-12 Score=105.97 Aligned_cols=76 Identities=17% Similarity=0.295 Sum_probs=68.7
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC----CCceEEEEeCCHHHHHHHHHHhcCcccC
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR----SAGFVYLRFESTEAAASAQRAMHMRWFA 627 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~----~~g~afV~F~~~~~A~~A~~~l~g~~~~ 627 (647)
....+|+|.|| |..++ +++|.++|++| .|..|.|+.+ ++|+|||+|.+.++|.+|+. |||..|.
T Consensus 8 ~~~~~l~v~nL--p~~~t--------~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~ 75 (91)
T 2dgw_A 8 TTCHTVKLRGA--PFNVT--------EKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMG 75 (91)
T ss_dssp CCCCEEEEECC--CSSCC--------HHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEET
T ss_pred CCccEEEEECC--CCCCC--------HHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeC
Confidence 45578999999 98888 89999999999 8999988654 37899999999999999999 9999999
Q ss_pred CeEEEEEEcChh
Q 006380 628 RRLISAIFMKPE 639 (647)
Q Consensus 628 Gr~l~v~~~~~~ 639 (647)
|+.|.|.++.+.
T Consensus 76 gr~i~v~~a~~~ 87 (91)
T 2dgw_A 76 GRYIEVFREKSG 87 (91)
T ss_dssp TEEEEEEEESSC
T ss_pred CcEEEEEECCcC
Confidence 999999998765
No 332
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.37 E-value=3.3e-12 Score=109.15 Aligned_cols=75 Identities=27% Similarity=0.364 Sum_probs=66.2
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeE-EEEEeCCHHHHHHHHHHHcCCeeeCC--eEEEEEe
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGF-GFVQFAQLEHAKAAQSALNGKLEIVG--RTLKVSS 454 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~Al~~l~g~~~~~g--~~l~v~~ 454 (647)
..|||+||++.+++++|+++|++||.|..|.|+.. .|| |||+|.+.++|..|+..|+|. .|.| +.|.|.|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~-~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGA-DIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTC-CCBTTBSEEEEEC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCC-EecCCCeEEEEEE
Confidence 34679999999999999999999999999998642 276 999999999999999999996 7877 6999999
Q ss_pred ecCCC
Q 006380 455 VTDHV 459 (647)
Q Consensus 455 ~~~~~ 459 (647)
+.+..
T Consensus 99 Ak~~~ 103 (124)
T 2e5i_A 99 ARPTR 103 (124)
T ss_dssp CSCSC
T ss_pred ecCCc
Confidence 98653
No 333
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=5.5e-13 Score=104.95 Aligned_cols=76 Identities=24% Similarity=0.420 Sum_probs=69.8
Q ss_pred ceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecccceE
Q 006380 221 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVGMVF 300 (647)
Q Consensus 221 ~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (647)
++|||+|||..+|+++|.++|++||.|..+.++.++.+|.++|||
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~a----------------------------------- 45 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFG----------------------------------- 45 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEE-----------------------------------
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceE-----------------------------------
Confidence 479999999999999999999999999999999999999999999
Q ss_pred eecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCC
Q 006380 301 FLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPS 352 (647)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~ 352 (647)
||+|.+.++|..|+...+..+.|+.|.|.++
T Consensus 46 ---------------------fV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 46 ---------------------FVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp ---------------------EECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred ---------------------EEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 9999999999999963339999999988654
No 334
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.5e-12 Score=111.03 Aligned_cols=78 Identities=19% Similarity=0.320 Sum_probs=70.1
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC----CCceEEEEeCCHHHHHHHHHHhcCccc-
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR----SAGFVYLRFESTEAAASAQRAMHMRWF- 626 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~----~~g~afV~F~~~~~A~~A~~~l~g~~~- 626 (647)
.+..+|||.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+.++|.+|+..|||..|
T Consensus 23 ~~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 92 (114)
T 1x5o_A 23 QDPTNLYISNL--PLSMD--------EQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIK 92 (114)
T ss_dssp CCTTEEEEESC--CTTCC--------HHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCC
T ss_pred CCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEc
Confidence 45578999999 88887 7999999999999999998654 478999999999999999999999999
Q ss_pred -------CCeEEEEEEcChh
Q 006380 627 -------ARRLISAIFMKPE 639 (647)
Q Consensus 627 -------~Gr~l~v~~~~~~ 639 (647)
.|++|.|.|+.|.
T Consensus 93 ~~~~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 93 TPPGVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp CCTTSCCCSSCBEEEECCCS
T ss_pred CCccccCCCCceeEEccCCC
Confidence 6888999998864
No 335
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.36 E-value=5.8e-13 Score=105.91 Aligned_cols=73 Identities=19% Similarity=0.245 Sum_probs=66.8
Q ss_pred CceEEeccCCccC------CHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeee
Q 006380 220 QRTVFAYQMPLKA------TERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLV 293 (647)
Q Consensus 220 ~~~v~i~nlp~~~------te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (647)
+++|||+|||..+ |+++|.++|++||.|..|.|+ +.+|.++|||
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~a---------------------------- 50 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYI---------------------------- 50 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEE----------------------------
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEE----------------------------
Confidence 3689999999999 779999999999999999987 5788999999
Q ss_pred ecccceEeecCCccccccCCcccccceeeEEecCCcCHHHHHH-hcCccccCc-cccCC
Q 006380 294 AEVGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA-LSGQLLLGQ-PVMVK 350 (647)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~-l~g~~~~g~-~l~v~ 350 (647)
||+|.+.++|..|+. |||..+.|+ .|.|.
T Consensus 51 ----------------------------fV~f~~~~~A~~Ai~~lng~~~~g~~~l~V~ 81 (81)
T 2krb_A 51 ----------------------------FLEYASPAHAVDAVKNADGYKLDKQHTFRVN 81 (81)
T ss_dssp ----------------------------EEEESSHHHHHHHHTTSSSCCCSSSSCCCCC
T ss_pred ----------------------------EEEECCHHHHHHHHHHhcCcccCCceeEEeC
Confidence 999999999999995 999999999 88773
No 336
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.36 E-value=1.3e-12 Score=116.37 Aligned_cols=76 Identities=24% Similarity=0.296 Sum_probs=68.6
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCC--eEEEEEee
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG--RTLKVSSV 455 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g--~~l~v~~~ 455 (647)
..|||+||++.+++++|+++|++||.|..|.|+... .+|||||+|.+.++|..|+..|+|. .|.| +.|+|.|+
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~-~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQ-NIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTB-CSSSSCSCEEEEEC
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCC-EecCCCcEEEEEEe
Confidence 578999999999999999999999999999986432 5789999999999999999999996 6865 99999999
Q ss_pred cCC
Q 006380 456 TDH 458 (647)
Q Consensus 456 ~~~ 458 (647)
.+.
T Consensus 122 k~~ 124 (164)
T 1sjr_A 122 KLT 124 (164)
T ss_dssp SSS
T ss_pred cCC
Confidence 864
No 337
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.36 E-value=8.4e-13 Score=113.42 Aligned_cols=81 Identities=17% Similarity=0.255 Sum_probs=73.3
Q ss_pred CCCCceEEeccCCccCCHHHHHHHHHhcCCce--eEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeee
Q 006380 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVR--DVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVA 294 (647)
Q Consensus 217 ~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~--~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (647)
.....+|||+|||+.+|+++|.++|++| .|. .|.|+.++. |+++|||
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfa----------------------------- 87 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEA----------------------------- 87 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEE-----------------------------
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEE-----------------------------
Confidence 3467899999999999999999999999 566 899999988 9999999
Q ss_pred cccceEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCChhh
Q 006380 295 EVGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAE 355 (647)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~~~ 355 (647)
||+|.+.++|.+|+.+++..|.|+.|.|.++...
T Consensus 88 ---------------------------FV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a~~~ 121 (126)
T 2hgm_A 88 ---------------------------FVQFASQELAEKALGKHKERIGHRYIEVFKSSQE 121 (126)
T ss_dssp ---------------------------EEEESSTTHHHHHHTTTTCCBTTBCCCCEEECHH
T ss_pred ---------------------------EEEECCHHHHHHHHHHCCCEECCEEEEEEECCHH
Confidence 9999999999999998999999999999876543
No 338
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.36 E-value=3.8e-13 Score=117.55 Aligned_cols=83 Identities=20% Similarity=0.233 Sum_probs=76.5
Q ss_pred CCCCceEEeccCCccCCHHHHHHHHHhcCC---ceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeee
Q 006380 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGK---VRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLV 293 (647)
Q Consensus 217 ~~~~~~v~i~nlp~~~te~~l~~~f~~~G~---v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (647)
.....+|||+|||+.+|+++|.++|++||. |..|.|+.++. |+++|||
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~a---------------------------- 91 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEA---------------------------- 91 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEE----------------------------
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEE----------------------------
Confidence 456789999999999999999999999999 89999999988 9999999
Q ss_pred ecccceEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCChhhh
Q 006380 294 AEVGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEK 356 (647)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~~~~ 356 (647)
||+|.+.++|.+|+.++|..+.|+.|.|.++....
T Consensus 92 ----------------------------FV~F~~~e~a~~Al~~~g~~l~gr~i~V~~a~~~e 126 (136)
T 2hgl_A 92 ----------------------------FVELGSEDDVKMALKKDRESMGHRYIEVFKSHRTE 126 (136)
T ss_dssp ----------------------------EEECSSHHHHHHHHTTTEEESSSSEEEEEECCHHH
T ss_pred ----------------------------EEEECCHHHHHHHHhcCCCEECCEEEEEEECChHH
Confidence 99999999999999999999999999998775443
No 339
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.36 E-value=2.2e-12 Score=104.34 Aligned_cols=76 Identities=13% Similarity=0.223 Sum_probs=63.3
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCccc--CC
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWF--AR 628 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~--~G 628 (647)
..+..+|||.|| |..++ +++|.++|++||.|..|.|+.+++|+|||+|.+.++|.+ |+|..+ .|
T Consensus 8 ~~~~~~l~V~~L--p~~~t--------e~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g 73 (89)
T 3d2w_A 8 HHHGSKVFVGRC--TEDMT--------AEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKG 73 (89)
T ss_dssp ---CCEEEEESC--CTTCC--------HHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETT
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCC
Confidence 355678999999 99888 899999999999999999998899999999999999883 566554 59
Q ss_pred eEEEEEEcChhh
Q 006380 629 RLISAIFMKPED 640 (647)
Q Consensus 629 r~l~v~~~~~~~ 640 (647)
+.|.|.++.+..
T Consensus 74 ~~v~v~~a~~k~ 85 (89)
T 3d2w_A 74 ISVHISNAEPKH 85 (89)
T ss_dssp EEEEEEECC---
T ss_pred EEEEEEEcCCCC
Confidence 999999988754
No 340
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.35 E-value=2e-12 Score=107.75 Aligned_cols=82 Identities=17% Similarity=0.258 Sum_probs=70.7
Q ss_pred CCCceEEEcCC--CCCCC--------HHHHHHhhccCCCeeEEEeccCCCC--CCeeeEEEEEeCCHHHHHHHHHHHcCC
Q 006380 375 AIDRKLYVGNL--HFNMT--------ETQLRKLFEPFGPVELVQLPLDIET--GQCKGFGFVQFAQLEHAKAAQSALNGK 442 (647)
Q Consensus 375 ~~~~~l~v~nL--p~~~~--------e~~l~~~f~~~g~i~~v~i~~~~~~--~~~~g~afV~f~~~~~A~~Al~~l~g~ 442 (647)
.++++|+|.|| |..+. +++|++.|++||.|.+|.|+++..+ +.++|+|||+|.+.++|.+|+..|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 45689999999 33332 3789999999999999999988744 357899999999999999999999997
Q ss_pred eeeCCeEEEEEeecC
Q 006380 443 LEIVGRTLKVSSVTD 457 (647)
Q Consensus 443 ~~~~g~~l~v~~~~~ 457 (647)
.|+|++|.|.|+..
T Consensus 83 -~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 -KFANRVVVTKYCDP 96 (105)
T ss_dssp -EETTEECEEEEECH
T ss_pred -EeCCCEEEEEEeCH
Confidence 79999999999863
No 341
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.35 E-value=1.9e-12 Score=119.17 Aligned_cols=80 Identities=20% Similarity=0.219 Sum_probs=72.5
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecC----CCceEEEEeCCHHHHHHHHHHhcCccc
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKR----SAGFVYLRFESTEAAASAQRAMHMRWF 626 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~----~~g~afV~F~~~~~A~~A~~~l~g~~~ 626 (647)
..++.+|||.|| |..++ +++|.++|++||.|..|.|..+ ++|+|||+|.+.++|.+|++.|||..|
T Consensus 85 ~~~~~~l~V~nL--p~~~t--------e~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l 154 (177)
T 2f3j_A 85 VETGAKLLVSNL--DFGVS--------DADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPL 154 (177)
T ss_dssp CTTCEEEEEECC--CSCCC--------HHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBC
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 356678999999 88888 7999999999999999999654 579999999999999999999999999
Q ss_pred CCeEEEEEEcChhh
Q 006380 627 ARRLISAIFMKPED 640 (647)
Q Consensus 627 ~Gr~l~v~~~~~~~ 640 (647)
.|+.|+|.|+....
T Consensus 155 ~Gr~l~V~~a~~~~ 168 (177)
T 2f3j_A 155 DGRPMDIQLVASQI 168 (177)
T ss_dssp SSSBCEEEEESSGG
T ss_pred CCEEEEEEEecCCC
Confidence 99999999987654
No 342
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.34 E-value=1.4e-12 Score=111.31 Aligned_cols=72 Identities=19% Similarity=0.253 Sum_probs=65.0
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeE-----EE
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRT-----LK 451 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~-----l~ 451 (647)
..+|||+|||+.+++++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||+.||+. .|.|+. |.
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~-~~~gr~~~~~~i~ 87 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNT-KFRSHEGETAYIR 87 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTC-BCCCTTSCCCBCE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCC-EECCcEeeeEEEE
Confidence 489999999999999999999999999999999765 89999999999999999999996 799998 55
Q ss_pred EEeec
Q 006380 452 VSSVT 456 (647)
Q Consensus 452 v~~~~ 456 (647)
|..+.
T Consensus 88 v~~~~ 92 (115)
T 3beg_B 88 VKVDG 92 (115)
T ss_dssp EEECC
T ss_pred eccCC
Confidence 55544
No 343
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.34 E-value=6.8e-13 Score=115.12 Aligned_cols=79 Identities=29% Similarity=0.521 Sum_probs=75.2
Q ss_pred CCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecccc
Q 006380 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVGM 298 (647)
Q Consensus 219 ~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (647)
+.++|||+|||..+|+++|.++|++||.|..|.|+.++.++.++|||
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~a--------------------------------- 81 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYA--------------------------------- 81 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEE---------------------------------
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEE---------------------------------
Confidence 35899999999999999999999999999999999999999999999
Q ss_pred eEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCCh
Q 006380 299 VFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSE 353 (647)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~ 353 (647)
||+|.+.++|..|+.|+|..+.|+.|.|.++.
T Consensus 82 -----------------------fV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 82 -----------------------YIEFAERNSVDAAVAMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp -----------------------EEEESSHHHHHHHHTTTTCEETTEECEEEESS
T ss_pred -----------------------EEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 99999999999999999999999999998765
No 344
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.34 E-value=3.3e-12 Score=113.72 Aligned_cols=78 Identities=18% Similarity=0.256 Sum_probs=68.6
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEE--------EEEe--cCCCceEEEEeCCHHHHHHHHHH
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKH--------IYVD--KRSAGFVYLRFESTEAAASAQRA 620 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~--------v~l~--~~~~g~afV~F~~~~~A~~A~~~ 620 (647)
..++++|||.|| |..++ +++|.++|++||.|.. |.+. ..++|+|||+|.+.++|.+|+..
T Consensus 42 ~~~~~~l~V~nL--p~~~t--------e~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 111 (143)
T 3egn_A 42 GEPNCRIYVKNL--AKHVQ--------EKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKE 111 (143)
T ss_dssp CSCCSEEEEEEE--CTTCC--------HHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHH
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHH
Confidence 456789999999 88888 8999999999998876 3332 34689999999999999999999
Q ss_pred hcCcccCCeEEEEEEcCh
Q 006380 621 MHMRWFARRLISAIFMKP 638 (647)
Q Consensus 621 l~g~~~~Gr~l~v~~~~~ 638 (647)
|||..|.|+.|.|.|+.+
T Consensus 112 lng~~~~g~~l~V~~a~~ 129 (143)
T 3egn_A 112 ANGYVLFGKPMVVQFARS 129 (143)
T ss_dssp HTTBEETTEECEEEECCC
T ss_pred hCCCEeCCcEEEEEECCC
Confidence 999999999999999854
No 345
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=7.4e-13 Score=113.57 Aligned_cols=81 Identities=20% Similarity=0.227 Sum_probs=73.3
Q ss_pred CCceEEeccCCccCCHHHHHHHHHhcCCc----eeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeee
Q 006380 219 DQRTVFAYQMPLKATERDVYEFFSKAGKV----RDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVA 294 (647)
Q Consensus 219 ~~~~v~i~nlp~~~te~~l~~~f~~~G~v----~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (647)
...+|||+|||+.+|+++|+++|++||.| ..|.|+.+ .+|+++|||
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~a----------------------------- 71 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDA----------------------------- 71 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEE-----------------------------
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEE-----------------------------
Confidence 56899999999999999999999999975 68999998 489999999
Q ss_pred cccceEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCChhhh
Q 006380 295 EVGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEK 356 (647)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~~~~ 356 (647)
||+|.+.++|.+||.+++..+.|+.|.|.++....
T Consensus 72 ---------------------------FV~F~~~~~A~~Al~~~~~~l~gR~i~V~~a~~~e 106 (123)
T 2dha_A 72 ---------------------------FVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAE 106 (123)
T ss_dssp ---------------------------EECCSSHHHHHHHHTTTTEESSSCEECCEEECHHH
T ss_pred ---------------------------EEEECCHHHHHHHHHhCCCeeCCeEEEEEECCHHH
Confidence 99999999999999889999999999998765443
No 346
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=2.1e-12 Score=105.91 Aligned_cols=81 Identities=11% Similarity=0.185 Sum_probs=69.1
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCCeEE
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLI 631 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l 631 (647)
...++|||.|| |..++ +++|.++|++||.|..|.+......+|||+|.+.++|.+|+. |||..|.|+.|
T Consensus 6 ~~~~~l~V~nl--~~~~t--------~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l 74 (94)
T 2e5g_A 6 SGLRSVFVSGF--PRGVD--------SAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRL 74 (94)
T ss_dssp TTCCEEEEECC--CTTCC--------HHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEEC
T ss_pred CCCCEEEEECC--CCCCC--------HHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEE
Confidence 34568999999 98888 899999999999999985543221299999999999999999 99999999999
Q ss_pred EEEEcChhhhhh
Q 006380 632 SAIFMKPEDYEA 643 (647)
Q Consensus 632 ~v~~~~~~~~~~ 643 (647)
.|.++.+.....
T Consensus 75 ~V~~a~~~~~~~ 86 (94)
T 2e5g_A 75 RVRPREQKEFQS 86 (94)
T ss_dssp CCBCSCCSCCCC
T ss_pred EEEECCcCCCCC
Confidence 999988766543
No 347
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.33 E-value=1e-12 Score=109.62 Aligned_cols=80 Identities=28% Similarity=0.522 Sum_probs=74.2
Q ss_pred CCCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecc
Q 006380 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEV 296 (647)
Q Consensus 217 ~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (647)
....++|||+|||..+|+++|.++|++||.|..|.|+.++ +|.++|||
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~a------------------------------- 53 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYG------------------------------- 53 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEE-------------------------------
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceE-------------------------------
Confidence 4467899999999999999999999999999999999998 89999999
Q ss_pred cceEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCChh
Q 006380 297 GMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEA 354 (647)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~~ 354 (647)
||+|.+.++|..|+. +|..+.|..|.|.++..
T Consensus 54 -------------------------fV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 54 -------------------------FVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp -------------------------EEEESSCCCHHHHTT-CCCEETTEECEEEEEEE
T ss_pred -------------------------EEEECCHHHHHHHHh-CCCeECCEEEEEEECCc
Confidence 999999999999999 99999999999876643
No 348
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.33 E-value=3e-13 Score=112.67 Aligned_cols=81 Identities=14% Similarity=0.253 Sum_probs=74.6
Q ss_pred CCCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecc
Q 006380 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEV 296 (647)
Q Consensus 217 ~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (647)
.....+|||+|||+.+|+++|.++|.+||.|.. .++.+..++.++|||
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~a------------------------------- 61 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFG------------------------------- 61 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEE-------------------------------
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEE-------------------------------
Confidence 346789999999999999999999999999988 777888889999999
Q ss_pred cceEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCChh
Q 006380 297 GMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEA 354 (647)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~~ 354 (647)
||+|.+.++|..|+.|+|..+.|+.|.|.++..
T Consensus 62 -------------------------fV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 94 (101)
T 1fj7_A 62 -------------------------YVDFESAEDLEKALELTGLKVFGNEIKLEKPKG 94 (101)
T ss_dssp -------------------------EEEESSHHHHHHHHHGGGCCBTTBCCEEECCSC
T ss_pred -------------------------EEEECCHHHHHHHHhcCCcEECCcEEEEEEcCC
Confidence 999999999999999999999999999988754
No 349
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=3.9e-12 Score=106.10 Aligned_cols=80 Identities=24% Similarity=0.330 Sum_probs=66.7
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEe--cCCCceEEEEeCCHHHHHHHHHHhcCcccCC
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVD--KRSAGFVYLRFESTEAAASAQRAMHMRWFAR 628 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~--~~~~g~afV~F~~~~~A~~A~~~l~g~~~~G 628 (647)
..+.++|||.|| |..++ +++|.++|+.|+.|.-+.-. ..++|+|||+|.+.++|.+|++.|||..|.|
T Consensus 12 ~~~~~~l~V~nL--p~~~t--------~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 81 (102)
T 2fc8_A 12 SQPSKTLFVKGL--SEDTT--------EETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG 81 (102)
T ss_dssp SCCCSSEEEECC--CTTCC--------HHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCEEEEeCC--CCccC--------HHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 356678999999 98888 79999999988654433322 1247899999999999999999999999999
Q ss_pred eEEEEEEcChhh
Q 006380 629 RLISAIFMKPED 640 (647)
Q Consensus 629 r~l~v~~~~~~~ 640 (647)
+.|.|.|+.+..
T Consensus 82 ~~l~V~~a~~~~ 93 (102)
T 2fc8_A 82 NKVTLDWAKPKG 93 (102)
T ss_dssp EECEEEECCCCC
T ss_pred eEEEEEEecCCC
Confidence 999999987753
No 350
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.32 E-value=3.7e-12 Score=102.77 Aligned_cols=72 Identities=18% Similarity=0.251 Sum_probs=65.8
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhcc----C-------CeEEEEEecCCCceEEEEeCCHHHHHHHHHH
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKY----G-------RVKHIYVDKRSAGFVYLRFESTEAAASAQRA 620 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~----G-------~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~ 620 (647)
.+.++|||.|| |..++ +++|.++|++| | .|..|.+..+ +|+|||+|.+.++|.+|+ .
T Consensus 4 ~~~~~l~V~nL--p~~~t--------~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-kg~afV~f~~~~~a~~A~-~ 71 (87)
T 2hzc_A 4 GSARRLYVGNI--PFGIT--------EEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-KNFAFLEFRSVDETTQAM-A 71 (87)
T ss_dssp GGGGEEEEESC--CTTCC--------HHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-SSEEEEEESSHHHHHHHG-G
T ss_pred CCCCEEEEeCC--CCCCC--------HHHHHHHHHHHhhhcccccCCCCcceEEEecCC-CcEEEEEcCCHHHHHHHH-h
Confidence 35678999999 88887 79999999999 8 8999999854 899999999999999999 9
Q ss_pred hcCcccCCeEEEEEE
Q 006380 621 MHMRWFARRLISAIF 635 (647)
Q Consensus 621 l~g~~~~Gr~l~v~~ 635 (647)
|||..|.|+.|+|..
T Consensus 72 l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 72 FDGIIFQGQSLKIRR 86 (87)
T ss_dssp GTTCEETTEECEEEC
T ss_pred cCCCEECCeEEEEeC
Confidence 999999999999973
No 351
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.32 E-value=3.5e-12 Score=109.58 Aligned_cols=77 Identities=12% Similarity=0.164 Sum_probs=69.3
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCCeEE
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLI 631 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l 631 (647)
.++++|||.|+ . ++ +++|.++|++||.|..|.|. .++|+|||+|.+.++|.+|+..|||..|.|+.|
T Consensus 37 ~~~~~lfVgnl--~--~t--------e~~L~~~F~~~G~I~~v~i~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l 103 (121)
T 2bz2_A 37 RKGNTLYVYGE--D--MT--------PTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQL 103 (121)
T ss_dssp CCCCEEEEECS--S--CC--------HHHHHHHHSTTCCCSCEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCCCEEEEcCC--C--CC--------HHHHHHHHHccCCEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 46678999996 2 44 79999999999999999987 578999999999999999999999999999999
Q ss_pred EEEEcChhhh
Q 006380 632 SAIFMKPEDY 641 (647)
Q Consensus 632 ~v~~~~~~~~ 641 (647)
.|.|+.+...
T Consensus 104 ~V~~a~~~~~ 113 (121)
T 2bz2_A 104 KVNIARKQPM 113 (121)
T ss_dssp EEEECCSSCC
T ss_pred EEEEeCCCCC
Confidence 9999987654
No 352
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=2.6e-12 Score=103.97 Aligned_cols=76 Identities=29% Similarity=0.457 Sum_probs=65.9
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
.++|||+|||+.+++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|.+|+.. .+.+.|+.|.|.++.
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~---~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE---DLIIKGISVHISNAE 76 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC---EEEETTEEEEEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC---CceeCCEEEEEEecC
Confidence 489999999999999999999999999999999875 589999999999999865321 256799999999998
Q ss_pred CCCC
Q 006380 457 DHVG 460 (647)
Q Consensus 457 ~~~~ 460 (647)
+...
T Consensus 77 ~~~~ 80 (88)
T 1wf0_A 77 PKHN 80 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 353
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.32 E-value=3.4e-12 Score=103.02 Aligned_cols=70 Identities=37% Similarity=0.697 Sum_probs=65.2
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccC----C-------CeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeee
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPF----G-------PVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEI 445 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~----g-------~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~ 445 (647)
.++|||+|||+.+++++|+++|+.| | .|..+.+..+ +|||||+|.+.++|.+|+ .|+|. .|
T Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~-~~ 77 (87)
T 2hzc_A 6 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI-IF 77 (87)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC-EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC-EE
Confidence 4899999999999999999999999 8 8999999765 799999999999999999 99995 79
Q ss_pred CCeEEEEEe
Q 006380 446 VGRTLKVSS 454 (647)
Q Consensus 446 ~g~~l~v~~ 454 (647)
.|+.|.|..
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999975
No 354
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.31 E-value=2.1e-12 Score=124.18 Aligned_cols=81 Identities=19% Similarity=0.297 Sum_probs=75.0
Q ss_pred CCceEEeccCCccCCHHHHHHHHHhcC--CceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecc
Q 006380 219 DQRTVFAYQMPLKATERDVYEFFSKAG--KVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEV 296 (647)
Q Consensus 219 ~~~~v~i~nlp~~~te~~l~~~f~~~G--~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (647)
...+|||+|||+.+|+++|.++|.+|| .|..|.|+.++.|++++|||
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfa------------------------------- 115 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFA------------------------------- 115 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEE-------------------------------
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEE-------------------------------
Confidence 567899999999999999999999999 99999999999999999999
Q ss_pred cceEeecCCccccccCCcccccceeeEEecCCcCHHHHHH-hcCccccCccccCCCChhh
Q 006380 297 GMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAE 355 (647)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~-l~g~~~~g~~l~v~~~~~~ 355 (647)
||+|.+.++|.+||. |||..|.|+.|.|.++...
T Consensus 116 -------------------------FV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~~ 150 (229)
T 3q2s_C 116 -------------------------LVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNKQ 150 (229)
T ss_dssp -------------------------EEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCHH
T ss_pred -------------------------EEEECCHHHHHHHHHHcCCCeECCEEeEEEECCCC
Confidence 999999999999996 9999999999999877543
No 355
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.30 E-value=7.5e-13 Score=116.07 Aligned_cols=80 Identities=21% Similarity=0.270 Sum_probs=72.5
Q ss_pred CCCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecc
Q 006380 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEV 296 (647)
Q Consensus 217 ~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (647)
.....+|||+|||+.+|+++|.++|++|| |+.|.|+.++. ++++|||
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfa------------------------------- 89 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEA------------------------------- 89 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCC-------------------------------
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEE-------------------------------
Confidence 34568999999999999999999999999 67999999986 9999999
Q ss_pred cceEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCChh
Q 006380 297 GMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEA 354 (647)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~~ 354 (647)
||+|.+.++|..||.+++..+.|+.|.|.++..
T Consensus 90 -------------------------FV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~ 122 (139)
T 2hgn_A 90 -------------------------DVEFATHEEAVAAMSKDRANMQHRYIELFLNST 122 (139)
T ss_dssp -------------------------EEECSHHHHHHHHTTCCSCSSSSCCCCCEECCC
T ss_pred -------------------------EEEeCCHHHHHHHHhhCCCEECCEEEEEEECCC
Confidence 999999999999999999999999999976643
No 356
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.30 E-value=7.7e-12 Score=106.27 Aligned_cols=79 Identities=20% Similarity=0.209 Sum_probs=69.5
Q ss_pred CceEEEcCCCCC-----CCHHHHHHhhccCCCeeEEEeccCCC----CCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCC
Q 006380 377 DRKLYVGNLHFN-----MTETQLRKLFEPFGPVELVQLPLDIE----TGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG 447 (647)
Q Consensus 377 ~~~l~v~nLp~~-----~~e~~l~~~f~~~g~i~~v~i~~~~~----~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g 447 (647)
+++|+|.||-.. -.+++|++.|++||.|..|.|+.+.. ++.++|+|||+|.+.++|.+|+..|||+ +|+|
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr-~f~G 98 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR-WFAG 98 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTC-EETT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCC-EECC
Confidence 489999999422 23689999999999999999998763 4578899999999999999999999998 7999
Q ss_pred eEEEEEeec
Q 006380 448 RTLKVSSVT 456 (647)
Q Consensus 448 ~~l~v~~~~ 456 (647)
++|.|.|+.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999986
No 357
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.30 E-value=7.4e-12 Score=117.10 Aligned_cols=79 Identities=22% Similarity=0.254 Sum_probs=72.1
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
.++|||+|||+.+++++|.++|++||.|..|.|+++. ++.++|||||+|.+.++|.+|+..++. .|.|+.|.|.+..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~--~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQ--KYKETDLLILFKD 185 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTC--EETTEECEEEETT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCC--eECCEEEEEEEhH
Confidence 3799999999999999999999999999999999987 689999999999999999999965543 6999999999987
Q ss_pred CC
Q 006380 457 DH 458 (647)
Q Consensus 457 ~~ 458 (647)
+.
T Consensus 186 ~y 187 (193)
T 2voo_A 186 DY 187 (193)
T ss_dssp TC
T ss_pred HH
Confidence 53
No 358
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=2.6e-12 Score=103.90 Aligned_cols=78 Identities=18% Similarity=0.234 Sum_probs=66.5
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCCeEE
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLI 631 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l 631 (647)
.++++|||.|| |..++ +++|.++|++||.|..|.|..+++|+|||+|.+.++|.+|+.. +..+.|+.|
T Consensus 3 ~~~~~l~V~nL--p~~~t--------e~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l 70 (88)
T 1wf0_A 3 SGSSGVFVGRC--TGDMT--------EDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISV 70 (88)
T ss_dssp SCCCEEEEESC--CSSSC--------HHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEE
T ss_pred CCCcEEEEeCC--CCCCC--------HHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEE
Confidence 45678999999 98888 8999999999999999999888999999999999999754221 345589999
Q ss_pred EEEEcChhhh
Q 006380 632 SAIFMKPEDY 641 (647)
Q Consensus 632 ~v~~~~~~~~ 641 (647)
.|.++.+..-
T Consensus 71 ~v~~a~~~~~ 80 (88)
T 1wf0_A 71 HISNAEPKHN 80 (88)
T ss_dssp EEECCCCCCC
T ss_pred EEEecCCCCC
Confidence 9999887643
No 359
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.29 E-value=8.3e-12 Score=107.21 Aligned_cols=75 Identities=31% Similarity=0.453 Sum_probs=68.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEee
Q 006380 376 IDRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSV 455 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~ 455 (647)
+.++|||+|| .+++++|+++|+.||.|..|.|.. ++|||||+|.+.++|.+|+..|+|. .|.|+.|.|.|+
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~------~kg~aFV~f~~~~~A~~Ai~~lng~-~~~g~~l~V~~a 108 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP------PRNCAFVTYEKMESADQAVAELNGT-QVESVQLKVNIA 108 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET------TTTEEEEECSSHHHHHHHHHHHTTC-BCSSCBCEEEEC
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCC-EECCeEEEEEEe
Confidence 4589999996 699999999999999999999863 4899999999999999999999995 799999999999
Q ss_pred cCCC
Q 006380 456 TDHV 459 (647)
Q Consensus 456 ~~~~ 459 (647)
.+..
T Consensus 109 ~~~~ 112 (121)
T 2bz2_A 109 RKQP 112 (121)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8643
No 360
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.94 E-value=3.3e-13 Score=115.58 Aligned_cols=85 Identities=25% Similarity=0.434 Sum_probs=78.2
Q ss_pred CCCceEEeccCCccCCHHHHHHHHHhcCCcee--------EEEeecCCCCCccceeeeeeeccCccccccccccCceeee
Q 006380 218 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRD--------VRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIK 289 (647)
Q Consensus 218 ~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~--------v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~ 289 (647)
.+.++|||+|||..+|+++|.++|++||.|.. |.|+.++.++.++|||
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~a------------------------ 60 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEA------------------------ 60 (116)
Confidence 46789999999999999999999999999998 9999999999999999
Q ss_pred eeeeecccceEeecCCccccccCCcccccceeeEEecCCcCHHHHHH-hcCccccCccccCCCChhhhhh
Q 006380 290 FFLVAEVGMVFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNL 358 (647)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~-l~g~~~~g~~l~v~~~~~~~~~ 358 (647)
||+|.+.++|..|+. |+|..+.|+.|.|.++......
T Consensus 61 --------------------------------fV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 61 --------------------------------TVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRADF 98 (116)
Confidence 999999999999996 9999999999999988765443
No 361
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=2.8e-11 Score=102.60 Aligned_cols=80 Identities=23% Similarity=0.338 Sum_probs=68.4
Q ss_pred CCCceEEEcCCCCCCC-----------HHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCe
Q 006380 375 AIDRKLYVGNLHFNMT-----------ETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKL 443 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~~-----------e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~ 443 (647)
.++++|+|.||..... +++|+++|++||.|..|.| .+. .++|||||+|.+.++|.+|+..|||.
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~- 87 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR- 87 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC-
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC-
Confidence 4569999999954433 5899999999999999966 443 37999999999999999999999996
Q ss_pred eeCCeEEEEEeecCCC
Q 006380 444 EIVGRTLKVSSVTDHV 459 (647)
Q Consensus 444 ~~~g~~l~v~~~~~~~ 459 (647)
.|+|++|.|.++.+..
T Consensus 88 ~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 88 WFGGRQITAQAWDGTT 103 (112)
T ss_dssp EETTEECEEEECCSCC
T ss_pred EECCcEEEEEEeCCCC
Confidence 7999999999997643
No 362
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.27 E-value=6.2e-12 Score=120.03 Aligned_cols=79 Identities=24% Similarity=0.444 Sum_probs=69.4
Q ss_pred CCCceEEEcCCCCCC---------CHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeee
Q 006380 375 AIDRKLYVGNLHFNM---------TETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEI 445 (647)
Q Consensus 375 ~~~~~l~v~nLp~~~---------~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~ 445 (647)
...++|||+|||..+ ++++|+++|++||.|..|.|+.. +|||||+|.+.++|..|++.|+|. .|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~-~l 204 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQ-TL 204 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTC-CC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCC-EE
Confidence 345899999999998 79999999999999999999864 899999999999999999999997 57
Q ss_pred ------------CCeEEEEEeecCCCC
Q 006380 446 ------------VGRTLKVSSVTDHVG 460 (647)
Q Consensus 446 ------------~g~~l~v~~~~~~~~ 460 (647)
.|+.|.|.||.+...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC----
T ss_pred eccccccccccCCCCEEEEEEccCCCC
Confidence 899999999986543
No 363
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.26 E-value=6e-12 Score=105.46 Aligned_cols=76 Identities=18% Similarity=0.257 Sum_probs=67.1
Q ss_pred ceEEeccC----CccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecc
Q 006380 221 RTVFAYQM----PLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEV 296 (647)
Q Consensus 221 ~~v~i~nl----p~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (647)
..|||+|| |+.+++.+|.++|++||.|.++.++.|+.||.|+|||
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfg------------------------------- 51 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVY------------------------------- 51 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEE-------------------------------
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEE-------------------------------
Confidence 68999999 9999999999999999999999999999999999999
Q ss_pred cceEeecCCccccccCCcccccceeeEEecC----CcC----HHHHHH---hcCccccCccccCCCC
Q 006380 297 GMVFFLLGDETYTVLDPATVLVSYRYIEFYD----VMS----VPMAIA---LSGQLLLGQPVMVKPS 352 (647)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~afv~f~~----~~~----a~~al~---l~g~~~~g~~l~v~~~ 352 (647)
||+|.+ +.. |..|+. ++|..+.|+.|.|...
T Consensus 52 -------------------------fVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln 93 (136)
T 2j8a_A 52 -------------------------LIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILN 93 (136)
T ss_dssp -------------------------EEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEEC
T ss_pred -------------------------EEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEEC
Confidence 899986 545 566654 6999999999998653
No 364
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.23 E-value=1.4e-11 Score=117.52 Aligned_cols=85 Identities=13% Similarity=0.182 Sum_probs=69.4
Q ss_pred CCCceEEecCcCCCCCCCCchh-hhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCccc----
Q 006380 552 SPSECLLLKNMFDPAMETDPDF-DLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWF---- 626 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~-~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~---- 626 (647)
..+++|||.|| +..+++..+ ...++++|.++|++||.|+.|.|.. ++|+|||+|.+.++|..|++.|+|..|
T Consensus 132 ~~~rtLfVgnL--~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~ 208 (240)
T 3u1l_A 132 KKNKTLYVGGI--DGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-SKNCGFVKFKYQANAEFAKEAMSNQTLLLPS 208 (240)
T ss_dssp CCCCEEEEECT--TGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-GGTEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred cCCceeecCCC--ChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-CCCEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence 45678999999 665411000 0112799999999999999999875 689999999999999999999999999
Q ss_pred --------CCeEEEEEEcChh
Q 006380 627 --------ARRLISAIFMKPE 639 (647)
Q Consensus 627 --------~Gr~l~v~~~~~~ 639 (647)
.|+.|.|.|+.++
T Consensus 209 ~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 209 DKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp STTGGGGGGSCCCEEEECC--
T ss_pred cccccccCCCCEEEEEEccCC
Confidence 8999999999764
No 365
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.23 E-value=2e-11 Score=117.54 Aligned_cols=88 Identities=27% Similarity=0.529 Sum_probs=76.8
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEec---------CCCceEEEEeCCHHHHHHHHHHhc
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDK---------RSAGFVYLRFESTEAAASAQRAMH 622 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~---------~~~g~afV~F~~~~~A~~A~~~l~ 622 (647)
..+.++.+.|++++..+. .+++++|.++|++||.|..|.|.. .++|++||+|.+.++|.+|+..||
T Consensus 122 ~~s~v~~l~n~v~~~e~~-----~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~ 196 (222)
T 3dxb_A 122 MESTVMVLRNMVDPKDID-----DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALN 196 (222)
T ss_dssp CBCSEEEEESSCCGGGCC-----TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred cccccchhhcCCCHHHHH-----HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhc
Confidence 345689999998877654 345789999999999999999852 247899999999999999999999
Q ss_pred CcccCCeEEEEEEcChhhhhhc
Q 006380 623 MRWFARRLISAIFMKPEDYEAK 644 (647)
Q Consensus 623 g~~~~Gr~l~v~~~~~~~~~~~ 644 (647)
|++|+||.|.|.|+++++|++.
T Consensus 197 gr~~~gr~i~~~~~~~~~f~~~ 218 (222)
T 3dxb_A 197 GRWFAGRKVVAEVYDQERFDNS 218 (222)
T ss_dssp TCBSSSSBCEEEECCHHHHHTT
T ss_pred CceECCeEEEEEEcCHHHhhhc
Confidence 9999999999999999999874
No 366
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=3.8e-11 Score=94.10 Aligned_cols=83 Identities=16% Similarity=0.257 Sum_probs=66.8
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCCeE
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRL 630 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~ 630 (647)
++|.-+|+|... +..-.+.-+-.++..+|.+.|.+||.|..|++.. +.+||+|.+.++|.+|+. |||..+.|+.
T Consensus 4 GPpd~tv~V~~~--~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~---d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 4 GSSGGTVLVSIK--SSLPENNFFDDALIDELLQQFASFGEVILIRFVE---DKMWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp CCSSCEEEEEEE--CSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS---SSEEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCCCCeEEEEec--cCccccccCCHHHHHHHHHHHHhCCCeEEEEEec---CCEEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 567778888877 4211111223345678999999999999999985 449999999999999998 9999999999
Q ss_pred EEEEEcChh
Q 006380 631 ISAIFMKPE 639 (647)
Q Consensus 631 l~v~~~~~~ 639 (647)
|+|.+.+|+
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999999875
No 367
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.19 E-value=8.4e-12 Score=103.87 Aligned_cols=72 Identities=19% Similarity=0.331 Sum_probs=60.7
Q ss_pred EcCCCCCCCHHHHHHhh------------ccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeE
Q 006380 382 VGNLHFNMTETQLRKLF------------EPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRT 449 (647)
Q Consensus 382 v~nLp~~~~e~~l~~~f------------~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~ 449 (647)
+.|||+.+++++|.+.| ++||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..|||. .|+|++
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~-~~~Gr~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNR-WFNGQP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTC-EETTEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCC-EECCEE
Confidence 34455555666555544 999999999999886 5789999999999999999999999997 799999
Q ss_pred EEEEee
Q 006380 450 LKVSSV 455 (647)
Q Consensus 450 l~v~~~ 455 (647)
|.|.|+
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 999986
No 368
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.16 E-value=1.3e-10 Score=97.82 Aligned_cols=76 Identities=18% Similarity=0.242 Sum_probs=66.0
Q ss_pred CCceEEEcCCCCCCC----------HHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeee
Q 006380 376 IDRKLYVGNLHFNMT----------ETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEI 445 (647)
Q Consensus 376 ~~~~l~v~nLp~~~~----------e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~ 445 (647)
++++|+|.||-.... +++|++.|++||.|..|.|.++. .+|+|||+|.+.++|.+|+..|||+ +|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~-~f 80 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGR-WF 80 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTC-EE
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCC-EE
Confidence 458999999943322 26889999999999999997763 4899999999999999999999997 79
Q ss_pred CCeEEEEEeec
Q 006380 446 VGRTLKVSSVT 456 (647)
Q Consensus 446 ~g~~l~v~~~~ 456 (647)
+|+.|.|.|+.
T Consensus 81 ~GR~i~v~~~~ 91 (114)
T 3s6e_A 81 AGKMITAAYVP 91 (114)
T ss_dssp TTEECEEEEEC
T ss_pred CCEEEEEEEEc
Confidence 99999999986
No 369
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.6e-10 Score=94.91 Aligned_cols=61 Identities=15% Similarity=0.228 Sum_probs=56.2
Q ss_pred HHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCCeEEEEEEcChhh
Q 006380 578 QGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPED 640 (647)
Q Consensus 578 ~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l~v~~~~~~~ 640 (647)
+++|.++|++||.|..|.|++.++|||||+|.+.++|..|++.++| +.|++|+|.|+.+..
T Consensus 31 e~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 31 KDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp HHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred HHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 7999999999999999999888899999999999999999998666 679999999987654
No 370
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=2e-11 Score=103.91 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=43.9
Q ss_pred CCCCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCC---CCcccee
Q 006380 217 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNS---RRSKGVG 265 (647)
Q Consensus 217 ~~~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t---~~s~G~~ 265 (647)
....++|||+|||+.+|+++|.++|.+||.|. +.++.+..+ |.++|||
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~a 55 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYA 55 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEE
Confidence 34678999999999999999999999999999 888888887 7999999
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.11 E-value=1.5e-10 Score=116.58 Aligned_cols=78 Identities=13% Similarity=0.148 Sum_probs=66.8
Q ss_pred CCCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCccc---C
Q 006380 551 GSPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWF---A 627 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~---~ 627 (647)
..|+++|||.|+.-+..++ +++|.++|++||.|..|.++. ++|||||+|.+.++|.+|++.|||..+ .
T Consensus 15 ~~ps~~l~VgN~gl~~~~t--------e~~L~~~F~~~G~V~~v~~~~-~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~ 85 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVS--------RNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVDDL 85 (345)
T ss_dssp SSCCSEEEEETCSGGGTCC--------HHHHHHHHHTTSCEEEEECCT-TCSEEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred CCCCCEEEEEcCCCCCCCC--------HHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCcccccc
Confidence 4678899999952255666 899999999999999998875 799999999999999999999999987 3
Q ss_pred Ce--EEEEEEcC
Q 006380 628 RR--LISAIFMK 637 (647)
Q Consensus 628 Gr--~l~v~~~~ 637 (647)
|+ +|.|.|+.
T Consensus 86 g~~~~ly~~~~~ 97 (345)
T 3tht_A 86 GQKITLYLNFVE 97 (345)
T ss_dssp SCEEECEEEECS
T ss_pred CCceEEEEEEee
Confidence 55 68888874
No 372
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=6.5e-10 Score=91.19 Aligned_cols=74 Identities=24% Similarity=0.266 Sum_probs=62.1
Q ss_pred ceEEEcCCC-------CCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEE
Q 006380 378 RKLYVGNLH-------FNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTL 450 (647)
Q Consensus 378 ~~l~v~nLp-------~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l 450 (647)
.+|.|.-.+ ..+++++|+++|++||.|..|.|+. .++|||||+|.+.++|..|+..+++ +.|++|
T Consensus 11 ~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~~---~~g~~l 82 (100)
T 2d9o_A 11 PKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEVG---LVDNPL 82 (100)
T ss_dssp CEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCCB---CSSSBC
T ss_pred ceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcCC---CCCCeE
Confidence 566665544 4589999999999999999999973 5699999999999999999987554 679999
Q ss_pred EEEeecCCC
Q 006380 451 KVSSVTDHV 459 (647)
Q Consensus 451 ~v~~~~~~~ 459 (647)
.|.|+.+..
T Consensus 83 ~V~~a~~~~ 91 (100)
T 2d9o_A 83 KISWLEGQP 91 (100)
T ss_dssp EEECSSCCC
T ss_pred EEEEccCCC
Confidence 999987643
No 373
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.06 E-value=1.1e-10 Score=109.04 Aligned_cols=78 Identities=19% Similarity=0.323 Sum_probs=71.3
Q ss_pred CCceEEeccCCccCCHHHHHHHHHhcCCceeEEEeecCCCCCccceeeeeeeccCccccccccccCceeeeeeeeecccc
Q 006380 219 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDDGNTLHSCLINSCCVIKFFLVAEVGM 298 (647)
Q Consensus 219 ~~~~v~i~nlp~~~te~~l~~~f~~~G~v~~v~i~~d~~t~~s~G~~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (647)
..++|||+|||+.+|+++|.++|++||.|..|.|+.+.. |.++|||
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~a--------------------------------- 153 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSI--------------------------------- 153 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEE---------------------------------
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEE---------------------------------
Confidence 358999999999999999999999999999999999864 8889999
Q ss_pred eEeecCCccccccCCcccccceeeEEecCCcCHHHHHHhcCccccCccccCCCCh
Q 006380 299 VFFLLGDETYTVLDPATVLVSYRYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSE 353 (647)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~afv~f~~~~~a~~al~l~g~~~~g~~l~v~~~~ 353 (647)
||+|.+.++|..|+.+.+..+.|+.|.|.+..
T Consensus 154 -----------------------FVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 154 -----------------------FVVFDSIESAKKFVETPGQKYKETDLLILFKD 185 (193)
T ss_dssp -----------------------EEEESSHHHHHHHHHCTTCEETTEECEEEETT
T ss_pred -----------------------EEEECCHHHHHHHHHhCCCeECCEEEEEEEhH
Confidence 99999999999999877789999999987653
No 374
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.99 E-value=8.7e-10 Score=111.11 Aligned_cols=76 Identities=32% Similarity=0.474 Sum_probs=65.3
Q ss_pred CCCCceEEEcC--CCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeee---CCe
Q 006380 374 GAIDRKLYVGN--LHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEI---VGR 448 (647)
Q Consensus 374 ~~~~~~l~v~n--Lp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~---~g~ 448 (647)
..++.+|||+| |++.+++++|+++|++||.|..|.|+. ++|||||+|.+.++|.+|++.|||. .+ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~-~~~~~~g~ 87 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGK-EVVDDLGQ 87 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTC-EEECTTSC
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCC-ccccccCC
Confidence 45568999999 578999999999999999999988854 3799999999999999999999997 34 345
Q ss_pred --EEEEEeec
Q 006380 449 --TLKVSSVT 456 (647)
Q Consensus 449 --~l~v~~~~ 456 (647)
.|.|.|+.
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 67788875
No 375
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=9.3e-10 Score=86.57 Aligned_cols=79 Identities=10% Similarity=0.141 Sum_probs=65.0
Q ss_pred cCCCCceEEecCcCCCC-----CCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCc
Q 006380 550 IGSPSECLLLKNMFDPA-----METDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMR 624 (647)
Q Consensus 550 ~~~~~~~l~v~Nl~~p~-----~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~ 624 (647)
.+||.-+|+|..+ +. .+.| .++..+|.+.|.+||.|..|++..+ .+||+|.+.++|.+||. |||.
T Consensus 11 ~GPpD~Tv~V~~~--~~~~~~~~~fd----~~l~~~L~~~F~~~G~Vilvr~v~d---~~fVtF~d~~sAl~AI~-ldG~ 80 (95)
T 1ufw_A 11 QGPLDATVVVNLQ--SPTLEEKNEFP----EDLRTELMQTLGSYGTIVLVRINQG---QMLVTFADSHSALSVLD-VDGM 80 (95)
T ss_dssp CCCTTCEEEEEES--SCCHHHHHSCC----HHHHHHHHHHHHHHSCCSEEEEETT---EEEEECSCSHHHHHHHH-GGGS
T ss_pred cCCCCCeEEEEec--CCcccccccCC----HHHHHHHHHHHHHCCCEEEEEEecC---cEEEEEcChHHHHHHHh-cCCe
Confidence 4677888999887 32 2222 2345779999999999999999854 49999999999999998 9999
Q ss_pred ccCCeEEEEEEcCh
Q 006380 625 WFARRLISAIFMKP 638 (647)
Q Consensus 625 ~~~Gr~l~v~~~~~ 638 (647)
.+.|+.|+|.+-++
T Consensus 81 ~v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 81 KVKGRAVKISGPSS 94 (95)
T ss_dssp EETTEEEEEECCCC
T ss_pred eeCCeEEEEeccCC
Confidence 99999999998654
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=6.7e-09 Score=87.33 Aligned_cols=79 Identities=11% Similarity=0.025 Sum_probs=68.8
Q ss_pred CCCCceEEecCcCCCCC-CCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCC-HHHHHHHHHHhc--Cccc
Q 006380 551 GSPSECLLLKNMFDPAM-ETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFES-TEAAASAQRAMH--MRWF 626 (647)
Q Consensus 551 ~~~~~~l~v~Nl~~p~~-~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~-~~~A~~A~~~l~--g~~~ 626 (647)
-++..+|+|.|| +.. ++ .++|+++|++||.|.+|.+..+. ..|||+|.+ ..+|..|+..|| |..|
T Consensus 15 ~~~G~il~v~~l--~~~~~s--------redLke~F~~~G~V~~Vd~~~g~-~tgfVrf~~~~~~A~~av~~ln~~~~~i 83 (121)
T 1owx_A 15 EKIGCLLKFSGD--LDDQTC--------REDLHILFSNHGEIKWIDFVRGA-KEGIILFKEKAKEALGKAKDANNGNLQL 83 (121)
T ss_dssp CCCCCEEEEEES--CCSSCC--------HHHHHHHTCSSCCEEEEECCTTC-SEEEEEESSCHHHHHHHHHHTTTSCBCT
T ss_pred ccCCeEEEEecC--CCCcCC--------HHHHHHHHHhcCCEEEEEEecCC-CEEEEEECCChHHHHHHHHHhhcCCcEE
Confidence 356779999999 766 66 89999999999999999997644 479999999 899999999994 8899
Q ss_pred CCeEEEEEEcChhh
Q 006380 627 ARRLISAIFMKPED 640 (647)
Q Consensus 627 ~Gr~l~v~~~~~~~ 640 (647)
.|..+++.+...++
T Consensus 84 ~g~~~~~evL~Gee 97 (121)
T 1owx_A 84 RNKEVTWEVLEGEV 97 (121)
T ss_dssp TSSSEEEEECCHHH
T ss_pred eCcEEEEEECCCHH
Confidence 99999999987654
No 377
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.78 E-value=2.5e-08 Score=78.17 Aligned_cols=76 Identities=28% Similarity=0.372 Sum_probs=63.5
Q ss_pred CCCCCceEEEcCCCC----CCCH----HHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCee
Q 006380 373 YGAIDRKLYVGNLHF----NMTE----TQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLE 444 (647)
Q Consensus 373 ~~~~~~~l~v~nLp~----~~~e----~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~ 444 (647)
.+|+.-+|+|...+. .+-. .+|.+.|.+||.|..++++.+. +||+|.+.++|.+|++ |+|. .
T Consensus 3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~-~ 72 (91)
T 2dnr_A 3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGK-E 72 (91)
T ss_dssp CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTC-E
T ss_pred CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCe-E
Confidence 456667888887762 3333 6788999999999999998873 8999999999999997 9995 8
Q ss_pred eCCeEEEEEeecCC
Q 006380 445 IVGRTLKVSSVTDH 458 (647)
Q Consensus 445 ~~g~~l~v~~~~~~ 458 (647)
++|+.|+|.++++.
T Consensus 73 v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 73 LLNRTITIALKSPS 86 (91)
T ss_dssp ETTEEEEEEECCCS
T ss_pred eCCeEEEEEeCCCC
Confidence 99999999998853
No 378
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.76 E-value=3.7e-08 Score=82.80 Aligned_cols=78 Identities=15% Similarity=0.212 Sum_probs=67.2
Q ss_pred CCCCCceEEEcCCCCC-CCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCC-HHHHHHHHHHHc-CCeeeCCeE
Q 006380 373 YGAIDRKLYVGNLHFN-MTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQ-LEHAKAAQSALN-GKLEIVGRT 449 (647)
Q Consensus 373 ~~~~~~~l~v~nLp~~-~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~-~~~A~~Al~~l~-g~~~~~g~~ 449 (647)
.-+++..|+|+||+.. ++.++|+++|+.||.|..|.+..+.. .|||.|.+ ..+|..|+..|+ +.+.|.|..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 3345689999999999 99999999999999999999988752 59999999 899999999995 337899988
Q ss_pred EEEEeec
Q 006380 450 LKVSSVT 456 (647)
Q Consensus 450 l~v~~~~ 456 (647)
+.+....
T Consensus 88 ~~~evL~ 94 (121)
T 1owx_A 88 VTWEVLE 94 (121)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 8887654
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.57 E-value=2.5e-07 Score=88.56 Aligned_cols=67 Identities=24% Similarity=0.253 Sum_probs=60.0
Q ss_pred CCHHHHHHhhccCCCeeEEEeccCC----CCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEEEeec
Q 006380 389 MTETQLRKLFEPFGPVELVQLPLDI----ETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKVSSVT 456 (647)
Q Consensus 389 ~~e~~l~~~f~~~g~i~~v~i~~~~----~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v~~~~ 456 (647)
-.+++|.+.|++||.|..|.|+.+. .++.++|++||+|.+.++|.+|+..|+|+ .|+|++|.|.|+.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr-~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR-WFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTC-BSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCc-eECCeEEEEEEcC
Confidence 3568899999999999999998544 34589999999999999999999999998 6999999999976
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.49 E-value=1.6e-07 Score=73.93 Aligned_cols=76 Identities=22% Similarity=0.326 Sum_probs=63.3
Q ss_pred CCCCCCCceEEEcCCCCC-----CCH----HHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcC
Q 006380 371 GPYGAIDRKLYVGNLHFN-----MTE----TQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG 441 (647)
Q Consensus 371 ~~~~~~~~~l~v~nLp~~-----~~e----~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g 441 (647)
...+|+.-+|+|..++.. +-. .+|.+.|..||.|..++++.+. +||+|.+.++|.+||. |+|
T Consensus 9 ~~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG 79 (95)
T 1ufw_A 9 SFQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDG 79 (95)
T ss_dssp CCCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGG
T ss_pred eecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCC
Confidence 345677789999988643 222 5688999999999999998873 9999999999999996 999
Q ss_pred CeeeCCeEEEEEeec
Q 006380 442 KLEIVGRTLKVSSVT 456 (647)
Q Consensus 442 ~~~~~g~~l~v~~~~ 456 (647)
. .++|+.|+|.+-.
T Consensus 80 ~-~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 80 M-KVKGRAVKISGPS 93 (95)
T ss_dssp S-EETTEEEEEECCC
T ss_pred e-eeCCeEEEEeccC
Confidence 5 8999999998754
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.45 E-value=5.7e-07 Score=71.95 Aligned_cols=74 Identities=9% Similarity=0.046 Sum_probs=66.9
Q ss_pred CceEEecCcCCCCCCCCchhhhhhHHHHHHHhhcc-----CCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCC
Q 006380 554 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKY-----GRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFAR 628 (647)
Q Consensus 554 ~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~-----G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~G 628 (647)
.++|-|.|| |..++ ...|+.+..+| |.+..|.|.++ -+-|+|+|.+...|.+|.-.|+|..|.|
T Consensus 21 ~rtiaL~~i--pDtvn--------darIr~lve~~~~i~~g~i~KI~L~pD-H~GAivef~d~~~AgKasLaL~G~ef~g 89 (117)
T 2l9w_A 21 ETLICLFPL--SDKVS--------PSLICQFLQEEIHINEKDIRKILLVSD-FNGAIIIFRDSKFAAKMLMILNGSQFQG 89 (117)
T ss_dssp TSCEEEECC--CTTCC--------HHHHHHHHHHHTCCCTTTCSEEEEETT-TTEEEEECSCHHHHHHHHHHHSSEEETT
T ss_pred CcEEEEecC--CCCCC--------HHHHHHHHhhhhccCccceeEEEEecC-CCceEEEEccchhhHHHHhhcCCeeecC
Confidence 578999999 98888 68999999999 99999999865 5679999999999999999999999999
Q ss_pred eEEEEEEcCh
Q 006380 629 RLISAIFMKP 638 (647)
Q Consensus 629 r~l~v~~~~~ 638 (647)
++|+|.-+.+
T Consensus 90 r~Lr~gTv~e 99 (117)
T 2l9w_A 90 KVIRSGTIND 99 (117)
T ss_dssp EEEEEECHHH
T ss_pred eEEEecCHHH
Confidence 9999987654
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.24 E-value=4.3e-06 Score=66.94 Aligned_cols=72 Identities=13% Similarity=0.180 Sum_probs=66.6
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccC-----CCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEE
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPF-----GPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 452 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~-----g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v 452 (647)
++|.|.|||..++...|+.+++++ |.|..|.+..+ -+-|+|+|.+...|-+|.-+|+| ..|.|++|.+
T Consensus 22 rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G-~ef~gr~Lr~ 94 (117)
T 2l9w_A 22 TLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNG-SQFQGKVIRS 94 (117)
T ss_dssp SCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSS-EEETTEEEEE
T ss_pred cEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCC-eeecCeEEEe
Confidence 899999999999999999999999 99999999887 46799999999999999989999 5899999999
Q ss_pred Eeec
Q 006380 453 SSVT 456 (647)
Q Consensus 453 ~~~~ 456 (647)
.-+.
T Consensus 95 gTv~ 98 (117)
T 2l9w_A 95 GTIN 98 (117)
T ss_dssp ECHH
T ss_pred cCHH
Confidence 7764
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.67 E-value=0.00011 Score=58.79 Aligned_cols=79 Identities=18% Similarity=0.116 Sum_probs=61.8
Q ss_pred ceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCCeEEEEE
Q 006380 555 ECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAI 634 (647)
Q Consensus 555 ~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l~v~ 634 (647)
++|+|.|| +..+-..+ ++.+.+.++|..|+.+.....-+ +=.-+.|.|.++++|.+|...||+..|.|+.|+|-
T Consensus 6 ntLiitnl--~~~vF~~~---~lk~~~e~Lf~~~~~~~tF~~lk-SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 6 SGLIACVA--NDDVFSES---ETRAKFESLFRTYDKDTTFQYFK-SFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CEEEEECC--CGGGGSTT---THHHHHHHHHHTTCSSCEEEEET-TTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred ceEEEecC--CHHHcCCH---HHHHHHHHHHHhhCcCcceeecC-cceEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 47999999 44332112 22467999999999877765543 33468999999999999999999999999999999
Q ss_pred EcChh
Q 006380 635 FMKPE 639 (647)
Q Consensus 635 ~~~~~ 639 (647)
|+.+.
T Consensus 80 Fgq~~ 84 (104)
T 1wey_A 80 FAQTL 84 (104)
T ss_dssp CCCCS
T ss_pred ecCCC
Confidence 97654
No 384
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.10 E-value=0.00062 Score=56.94 Aligned_cols=78 Identities=14% Similarity=0.183 Sum_probs=63.3
Q ss_pred ceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEE-EEEec------------------CCCceEEEEeCCHHHHH
Q 006380 555 ECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKH-IYVDK------------------RSAGFVYLRFESTEAAA 615 (647)
Q Consensus 555 ~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~-v~l~~------------------~~~g~afV~F~~~~~A~ 615 (647)
..|.|.+. |... ...|.+.|++||.|.. +.+.. .+.++..|+|.+..+|.
T Consensus 8 ~~VtVFGF--p~~~---------~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~ 76 (132)
T 3p3d_A 8 LAILVFGY--PETM---------ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAV 76 (132)
T ss_dssp CEEEEECC--CGGG---------HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHH
T ss_pred eEEEEEec--CHHH---------HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHH
Confidence 46888888 7655 5789999999999876 22211 13578899999999999
Q ss_pred HHHHHhcCcccCCeEEEEEEcChhhhhhc
Q 006380 616 SAQRAMHMRWFARRLISAIFMKPEDYEAK 644 (647)
Q Consensus 616 ~A~~~l~g~~~~Gr~l~v~~~~~~~~~~~ 644 (647)
+|+. -||..|+|..|-|..+++...+.+
T Consensus 77 rAL~-~NG~ii~G~mIGV~Py~~~~ve~l 104 (132)
T 3p3d_A 77 DALL-ENGAVFNGVLLGVIPYTKDAVERL 104 (132)
T ss_dssp HHHT-TTTCEETTEECEEEECCHHHHHHH
T ss_pred HHHH-hCCeEeCcEEEEEEECCHHHHHHH
Confidence 9988 599999999999999998876655
No 385
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.07 E-value=0.003 Score=52.14 Aligned_cols=72 Identities=14% Similarity=0.206 Sum_probs=59.4
Q ss_pred CceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCC-eEEE
Q 006380 554 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFAR-RLIS 632 (647)
Q Consensus 554 ~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~G-r~l~ 632 (647)
...|.|.+. |... ...|...|++||.|.....+ ....+..|.|.+..+|.+|+. .||..|+| -.|-
T Consensus 24 ~~wVtVFGF--p~~~---------~~~VL~~F~~~G~Iv~~~~~-~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIG 90 (119)
T 1wwh_A 24 DTWVTVFGF--PQAS---------ASYILLQFAQYGNILKHVMS-NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIG 90 (119)
T ss_dssp GGEEEEECC--CGGG---------HHHHHHHHHTTSCEEEEEEC-SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECE
T ss_pred CCEEEEECC--CHHH---------HHHHHHHHHhhCcEEEeccC-CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEE
Confidence 467999998 6654 47899999999999988874 456899999999999999988 49999985 6677
Q ss_pred EEEcCh
Q 006380 633 AIFMKP 638 (647)
Q Consensus 633 v~~~~~ 638 (647)
|..+..
T Consensus 91 V~p~~d 96 (119)
T 1wwh_A 91 VKPCID 96 (119)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 776543
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.85 E-value=0.0073 Score=47.47 Aligned_cols=54 Identities=24% Similarity=0.325 Sum_probs=46.3
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHc
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALN 440 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~ 440 (647)
..++| ++|..+.-.||.++|+.||.| .|.++-|- .|||.|.+.+.|..||..+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 66667 999999999999999999965 46666663 79999999999999998774
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.70 E-value=0.0084 Score=47.22 Aligned_cols=69 Identities=13% Similarity=0.197 Sum_probs=55.4
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCC--CeeeEEEEEeCCHHHHHHHHHHHcCCeeeC
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETG--QCKGFGFVQFAQLEHAKAAQSALNGKLEIV 446 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~--~~~g~afV~f~~~~~A~~Al~~l~g~~~~~ 446 (647)
.+|.|++||+.+|++++.+.++.+..+..........+. ..-.-|||.|.+.+++......++|.+.++
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 579999999999999999999999877666665444222 234679999999999999999999974343
No 388
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.69 E-value=0.003 Score=50.62 Aligned_cols=72 Identities=17% Similarity=0.165 Sum_probs=61.4
Q ss_pred ceEEEcCCCCCC-CH----HHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEEE
Q 006380 378 RKLYVGNLHFNM-TE----TQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLKV 452 (647)
Q Consensus 378 ~~l~v~nLp~~~-~e----~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~v 452 (647)
.+|+|.||+..+ .. +.+..+|..|+++....+.+. -.-..|.|.+.++|.+|-..|++. .+.|..|+|
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~-~f~g~~~r~ 78 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKT-EFLGKEMKL 78 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTS-EETTEECEE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccc-eecCceeEE
Confidence 789999998766 22 567899999999988777664 235789999999999999999996 899999999
Q ss_pred Eeec
Q 006380 453 SSVT 456 (647)
Q Consensus 453 ~~~~ 456 (647)
-+++
T Consensus 79 YFgq 82 (104)
T 1wey_A 79 YFAQ 82 (104)
T ss_dssp ECCC
T ss_pred EecC
Confidence 9987
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.65 E-value=0.0062 Score=47.87 Aligned_cols=57 Identities=14% Similarity=0.255 Sum_probs=45.5
Q ss_pred CCCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhc
Q 006380 552 SPSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMH 622 (647)
Q Consensus 552 ~~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~ 622 (647)
....+++| ++ |.++. ..||.++|+.||.|.--=|. -..|||-|.+++.|..|+..+.
T Consensus 14 ~r~HVf~l-~F--P~ewK--------t~DI~~lFs~fggv~I~Wid---DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 14 KRDHVLHV-TF--PKEWK--------TSDLYQLFSAFGNIQISWID---DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCSEEEE-EC--CTTCC--------HHHHHHHHTTTCSCCCEEEE---TTEEEEECSCHHHHHHHHHHHH
T ss_pred CCCeEEEE-eC--Chhhh--------hHHHHHHhhccCCEEEEEEc---CCeEEEEecCHHHHHHHHHhcc
Confidence 44567888 99 98887 79999999999955433333 3479999999999999999774
No 390
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.42 E-value=0.02 Score=45.64 Aligned_cols=70 Identities=21% Similarity=0.178 Sum_probs=57.8
Q ss_pred CceEEEcCCCCCCCHHHHHHhhcc-----CCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCeEEE
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEP-----FGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTLK 451 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~-----~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~~l~ 451 (647)
..+|.|.|||..+.++.|.-.|+. -|.|..|.... +-|+|.|.+...|+..|+.-. +.|.|..|.
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~--H~L~~~~Ls 77 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQAD--HELHGAQLS 77 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSC--CBSSSSBCE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCc--ceecCeEEE
Confidence 489999999999999999999986 27888888743 468999999999999984423 369999999
Q ss_pred EEeec
Q 006380 452 VSSVT 456 (647)
Q Consensus 452 v~~~~ 456 (647)
|....
T Consensus 78 V~P~~ 82 (104)
T 2dhx_A 78 LRPAP 82 (104)
T ss_dssp EEECC
T ss_pred EEcCC
Confidence 97754
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.27 E-value=0.018 Score=47.53 Aligned_cols=71 Identities=11% Similarity=0.120 Sum_probs=57.9
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcCCeeeCC-eEEEEEeec
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVG-RTLKVSSVT 456 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g-~~l~v~~~~ 456 (647)
..|.|-+.|.. ....|...|++||.|....... ...+..|.|.+..+|++|| ..||. .|.| ..|-|.++.
T Consensus 25 ~wVtVFGFp~~-~~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL-~kNG~-ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 25 TWVTVFGFPQA-SASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKAL-SKDGR-IFGESIMIGVKPCI 95 (119)
T ss_dssp GEEEEECCCGG-GHHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHH-TTTTC-EETTTEECEEEECC
T ss_pred CEEEEECCCHH-HHHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHH-HhCCe-EecCCEEEEEEECC
Confidence 78899999887 4778889999999998887621 2468999999999999999 77996 5764 677788775
Q ss_pred C
Q 006380 457 D 457 (647)
Q Consensus 457 ~ 457 (647)
+
T Consensus 96 d 96 (119)
T 1wwh_A 96 D 96 (119)
T ss_dssp C
T ss_pred C
Confidence 4
No 392
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.25 E-value=0.0047 Score=48.70 Aligned_cols=55 Identities=15% Similarity=0.268 Sum_probs=43.7
Q ss_pred CceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhc
Q 006380 554 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMH 622 (647)
Q Consensus 554 ~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~ 622 (647)
..+++| ++ |.++. ..||.++|+.||.|.--=|. -..|||-|.+++.|..|+..+.
T Consensus 6 ~HV~~l-~F--P~ewK--------t~Di~~lFs~fggv~I~Wid---DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TF--PKEWK--------TSDLYQLFSAFGNIQISWID---DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-EC--CTTCC--------HHHHHHHTTTSEEEEEEEEE---TTEEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eC--Chhhh--------hHHHHHHHhccCCEEEEEEc---CCeEEEEecCHHHHHHHHHhcc
Confidence 357788 98 88887 79999999999933322233 3579999999999999999874
No 393
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.03 E-value=0.051 Score=43.30 Aligned_cols=74 Identities=11% Similarity=-0.050 Sum_probs=58.7
Q ss_pred CCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhc-----cCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccC
Q 006380 553 PSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSK-----YGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFA 627 (647)
Q Consensus 553 ~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~-----~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~ 627 (647)
...+|.|.|| |..+. .+.|.-.|+. =|.|..|...+ +-|+|+|.+...|.+.++. .-..|.
T Consensus 7 ~~~~I~V~~l--Pp~~~--------~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~k-~~H~L~ 72 (104)
T 2dhx_A 7 GGVAVEVRGL--PPAVP--------DELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLAQ-ADHELH 72 (104)
T ss_dssp CCCEEEEESC--CTTSC--------HHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHTC-SCCBSS
T ss_pred CccEEEEECC--CCCCC--------hhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhcC-Ccceec
Confidence 4568999999 88776 5678888876 26899998874 6899999999999888763 367888
Q ss_pred CeEEEEEEcChhh
Q 006380 628 RRLISAIFMKPED 640 (647)
Q Consensus 628 Gr~l~v~~~~~~~ 640 (647)
|..|.|.-+.+..
T Consensus 73 ~~~LsV~P~~~~~ 85 (104)
T 2dhx_A 73 GAQLSLRPAPPRA 85 (104)
T ss_dssp SSBCEEEECCCCC
T ss_pred CeEEEEEcCCCCC
Confidence 8999998766543
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.80 E-value=0.012 Score=46.43 Aligned_cols=54 Identities=26% Similarity=0.336 Sum_probs=46.0
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHc
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALN 440 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~ 440 (647)
..++| ++|..+.-.||.++|+.||.| .|.++-|- .|||.|.+.+.|..||..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 45666 999999999999999999954 57776663 79999999999999998774
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.67 E-value=0.033 Score=44.05 Aligned_cols=79 Identities=10% Similarity=0.135 Sum_probs=55.0
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCC--CeeeEEEEEeCCHHHHHHHHHHHcCCeeeCCe----EE
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETG--QCKGFGFVQFAQLEHAKAAQSALNGKLEIVGR----TL 450 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~--~~~g~afV~f~~~~~A~~Al~~l~g~~~~~g~----~l 450 (647)
+.+|.|+.||+.+|++++.+.++.+-.+..........+. ..-.-|||.|.+.++.......++|.+.++.+ +.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 3689999999999999999888876554333332222111 12346899999999999999999997434332 34
Q ss_pred EEEee
Q 006380 451 KVSSV 455 (647)
Q Consensus 451 ~v~~~ 455 (647)
.|.+|
T Consensus 89 ~VE~A 93 (97)
T 2l08_A 89 VVEFA 93 (97)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 45554
No 396
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.58 E-value=0.071 Score=41.90 Aligned_cols=74 Identities=11% Similarity=0.076 Sum_probs=58.0
Q ss_pred ceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEe-cC------CCceEEEEeCCHHHHHHHHHHhcCcccC
Q 006380 555 ECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVD-KR------SAGFVYLRFESTEAAASAQRAMHMRWFA 627 (647)
Q Consensus 555 ~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~-~~------~~g~afV~F~~~~~A~~A~~~l~g~~~~ 627 (647)
..|+|++| |..++ ++++.+.+...+.+...... +. .-..|||.|.+.+++..-.+.++|..|-
T Consensus 2 ~KvVIRrL--PP~Lt--------eeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRL--PPTLT--------KEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEE--CTTCC--------HHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCC--CCCCC--------HHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 36999999 99998 88899999988887766552 21 2357999999999999999999999984
Q ss_pred ---C--eEEEEEEcCh
Q 006380 628 ---R--RLISAIFMKP 638 (647)
Q Consensus 628 ---G--r~l~v~~~~~ 638 (647)
| ....|+|++-
T Consensus 72 D~kg~~~~a~VE~AP~ 87 (91)
T 1uw4_A 72 DNKGQEYPAIVEFAPF 87 (91)
T ss_dssp CTTCCEEECEEEECSS
T ss_pred cCCCCEeeeEEEEcCC
Confidence 3 3345777663
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.82 E-value=0.079 Score=44.31 Aligned_cols=76 Identities=17% Similarity=0.109 Sum_probs=55.4
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeE-EEeccCC------------CCC-CeeeEEEEEeCCHHHHHHHHHHHcCCe
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVEL-VQLPLDI------------ETG-QCKGFGFVQFAQLEHAKAAQSALNGKL 443 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~-v~i~~~~------------~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~ 443 (647)
..|.|-+.|.. ....|...|++||.|.. +.+.... ... ....+..|.|.+..+|.+|| ..||.
T Consensus 8 ~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~- 84 (132)
T 3p3d_A 8 LAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGA- 84 (132)
T ss_dssp CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTC-
T ss_pred eEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCe-
Confidence 56777778655 56678889999999866 2222100 000 13568899999999999999 88997
Q ss_pred eeCCeEEEEEeec
Q 006380 444 EIVGRTLKVSSVT 456 (647)
Q Consensus 444 ~~~g~~l~v~~~~ 456 (647)
.|+|..|-|.++.
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 5999988888876
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=92.44 E-value=0.32 Score=38.46 Aligned_cols=74 Identities=12% Similarity=0.097 Sum_probs=53.6
Q ss_pred CceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEe-cC------CCceEEEEeCCHHHHHHHHHHhcCccc
Q 006380 554 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVD-KR------SAGFVYLRFESTEAAASAQRAMHMRWF 626 (647)
Q Consensus 554 ~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~-~~------~~g~afV~F~~~~~A~~A~~~l~g~~~ 626 (647)
+-.|+|+.| |..+| ++++.+.+...-.+...... +. .-..|||.|.+.++...-.+.++|..|
T Consensus 9 ~~KvVIRrL--PP~Lt--------ee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 9 SHMVVIRRL--PPGLT--------KEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCCEEEECC--CSCSC--------HHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred ceeEEEeCC--CCCCC--------HHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 457999999 99998 67777766665444433221 11 134789999999999999999999998
Q ss_pred C---C--eEEEEEEcC
Q 006380 627 A---R--RLISAIFMK 637 (647)
Q Consensus 627 ~---G--r~l~v~~~~ 637 (647)
- | .+..|+|++
T Consensus 79 ~D~kg~~~~a~VE~AP 94 (97)
T 2l08_A 79 LDSKGLEYPAVVEFAP 94 (97)
T ss_dssp ECTTCCEEEEEEEECC
T ss_pred EeCCCCEeeeEEEecC
Confidence 4 2 456677776
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=91.65 E-value=0.09 Score=54.71 Aligned_cols=53 Identities=21% Similarity=0.315 Sum_probs=41.5
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHH
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQ 436 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al 436 (647)
+.|+|. .|..+++.+|.+.|++||+|..+.+..+. .-||.|||.+.+++..++
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~ 106 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQ 106 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHH
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHH
Confidence 789997 79999999999999999999999887653 369999999999998775
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=89.86 E-value=0.17 Score=52.68 Aligned_cols=55 Identities=15% Similarity=0.266 Sum_probs=40.8
Q ss_pred ceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHH
Q 006380 555 ECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRA 620 (647)
Q Consensus 555 ~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~ 620 (647)
+.|+|. + |.... +.+|.+.|++||.|..+....+..-+|.|||.+.++|..++..
T Consensus 54 rsv~v~-~--~~~~~--------~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-C--PEKIS--------ENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-E--CCC-----------CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred ceEEEE-c--CCCCC--------HHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 568886 5 55554 6899999999999999999876667999999999998877543
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=74.60 E-value=10 Score=40.01 Aligned_cols=55 Identities=24% Similarity=0.283 Sum_probs=45.0
Q ss_pred ceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcC
Q 006380 378 RKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG 441 (647)
Q Consensus 378 ~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g 441 (647)
..++|+ +|..+...+|.++|+.||.+ .|.++.+ ..|||.|.+.+.|..++..+..
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 556665 99999999999999999965 5666554 2699999999999999988853
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=67.21 E-value=12 Score=39.68 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=42.3
Q ss_pred CceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhc
Q 006380 554 SECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMH 622 (647)
Q Consensus 554 ~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~ 622 (647)
..+++|. + |..+. ..+|.++|+.||.|. |... ....|||.|.+.+.|..|++.+.
T Consensus 440 ~~vl~v~-f--~~~~~--------~~~i~~~fs~fg~v~-V~wi--ddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-F--PKEWK--------TSDLYQLFSAFGNIQ-ISWI--DDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-C--CTTCC--------HHHHHHHGGGGCCCE-EEEC--SSSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-C--CCCCC--------HHHHHHHHHhcCCEE-EEEE--cCCeEEEEECCHHHHHHHHHHHH
Confidence 4577776 5 55555 589999999999653 3332 35689999999999999999885
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=54.41 E-value=68 Score=24.26 Aligned_cols=71 Identities=17% Similarity=0.193 Sum_probs=53.2
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCeeeEEEEEeCCHHHHHHHHHHHcC----C--eeeCCeEE
Q 006380 377 DRKLYVGNLHFNMTETQLRKLFEPFGPVELVQLPLDIETGQCKGFGFVQFAQLEHAKAAQSALNG----K--LEIVGRTL 450 (647)
Q Consensus 377 ~~~l~v~nLp~~~~e~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g----~--~~~~g~~l 450 (647)
.+-|.|-|+|..+-..++.-...-.|.--.+..+ .|.|.|.|.+.++...|+..|-+ . +.|.|..+
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkllnhnnnklqieirgqic 83 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQIC 83 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEEE
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcceee
Confidence 3678899999999888887777777766556553 46799999999999999987722 1 45677776
Q ss_pred EEEee
Q 006380 451 KVSSV 455 (647)
Q Consensus 451 ~v~~~ 455 (647)
.|-..
T Consensus 84 dvist 88 (129)
T 4eyt_A 84 DVIST 88 (129)
T ss_dssp EEECC
T ss_pred eeeec
Confidence 66443
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=39.26 E-value=1.2e+02 Score=22.85 Aligned_cols=74 Identities=12% Similarity=0.119 Sum_probs=49.8
Q ss_pred CCceEEecCcCCCCCCCCchhhhhhHHHHHHHhhccCCeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCc-------c
Q 006380 553 PSECLLLKNMFDPAMETDPDFDLEIQGDVEEECSKYGRVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMR-------W 625 (647)
Q Consensus 553 ~~~~l~v~Nl~~p~~~~d~~~~~~i~edl~~~f~~~G~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~-------~ 625 (647)
.++.|.|-|+ |..+. ..++.-...-.|---.|... .|.|.|.|.+.++...|+..|-+. .
T Consensus 11 qnclikiini--pqgtl--------kaevvlavrhlgyefycdyi---dgqamirfqnsdeqrlaiqkllnhnnnklqie 77 (129)
T 4eyt_A 11 QNCLIKIINI--PQGTL--------KAEVVLAVRHLGYEFYCDYI---DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIE 77 (129)
T ss_dssp CSCEEEEECC--CTTCC--------HHHHHHHHHTTCCCEEEEEC---SSCEEEEESSHHHHHHHHHHHEETTTTEEEEE
T ss_pred hCcEEEEEec--CCCce--------eeeeEEeehhcCeeEeeeee---cCeeEEEecCChHHHHHHHHHHhcCCCEEEEE
Confidence 4456889999 88775 34444444455666667554 478999999999999999887321 3
Q ss_pred cCCeEEEEEE-cChh
Q 006380 626 FARRLISAIF-MKPE 639 (647)
Q Consensus 626 ~~Gr~l~v~~-~~~~ 639 (647)
+.|...-|-. ++++
T Consensus 78 irgqicdvistiped 92 (129)
T 4eyt_A 78 IRGQICDVISTIPED 92 (129)
T ss_dssp ETTEEEEEECCCCHH
T ss_pred EcceeeeeeecCCch
Confidence 5677766544 4443
No 405
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=38.80 E-value=75 Score=24.52 Aligned_cols=46 Identities=17% Similarity=0.204 Sum_probs=33.9
Q ss_pred HHHHHHhhccC-CeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCc
Q 006380 579 GDVEEECSKYG-RVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMR 624 (647)
Q Consensus 579 edl~~~f~~~G-~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~ 624 (647)
+.|.......| .|..|.++..-.|+.||++.-.++.-.++..+.|.
T Consensus 27 ~~L~~~~~~~~l~i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 27 GLMASRAEKEQLDVYSILASESLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp HHHHHHHHHTTCCEEEEEECTTSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred HHHHHHHHhcCCcEEEEEEecccCCEEEEEEecchhHHHHHHCCCCc
Confidence 44444433333 37788888767999999999999988898887765
No 406
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=33.13 E-value=60 Score=23.76 Aligned_cols=43 Identities=7% Similarity=0.028 Sum_probs=31.4
Q ss_pred CeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCCeEEEEEEc
Q 006380 590 RVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFM 636 (647)
Q Consensus 590 ~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l~v~~~ 636 (647)
.|-.|.|. ..+.||+-.. ..|..++..|++..+.|+.+.|..+
T Consensus 32 ~IG~I~i~---d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 32 DIGIITIM---DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp GEEEEEEC---SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEEC
T ss_pred hccEEEEe---CCcEEEEECH-HHHHHHHHHhccccCcCceEEEEEC
Confidence 45667776 3488999884 4578899999999999999998865
No 407
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=29.40 E-value=56 Score=28.60 Aligned_cols=86 Identities=10% Similarity=0.064 Sum_probs=51.3
Q ss_pred eEEecCcCCCC-CCCCchhhhhhHHHHHHHh--hccCCeEEEEEe--cCCCceEEEEeCCHHHHHHHHHHhcCc------
Q 006380 556 CLLLKNMFDPA-METDPDFDLEIQGDVEEEC--SKYGRVKHIYVD--KRSAGFVYLRFESTEAAASAQRAMHMR------ 624 (647)
Q Consensus 556 ~l~v~Nl~~p~-~~~d~~~~~~i~edl~~~f--~~~G~v~~v~l~--~~~~g~afV~F~~~~~A~~A~~~l~g~------ 624 (647)
.++|.|+ |. ...|..+.-.--..|.+.| ..|..+....+. ....|+|.|.|.+--..-+-...|+..
T Consensus 14 mgIl~N~--~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~fek~Fe~~~~ 91 (172)
T 4e8u_A 14 KGIVVNI--PTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLLFDKAYTVDGH 91 (172)
T ss_dssp EEEEECC--CCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEEec--cccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHHHHHHHHHcCC
Confidence 5788888 66 3333222212236788877 889877655553 335789999999865554444444321
Q ss_pred --------ccCCeEEEEEEcChhhhhh
Q 006380 625 --------WFARRLISAIFMKPEDYEA 643 (647)
Q Consensus 625 --------~~~Gr~l~v~~~~~~~~~~ 643 (647)
.-.+..|.-=.|..++|..
T Consensus 92 GK~dW~~~~~~~~~lyGW~Ar~dDy~s 118 (172)
T 4e8u_A 92 GKKDWLKKDGPKLGLYGWIARADDYNG 118 (172)
T ss_dssp SHHHHTCSSSCCCSCEEEECBHHHHHS
T ss_pred CHHHHhhCCCCCCceEEEecccccccC
Confidence 1235556666667777654
No 408
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=23.30 E-value=85 Score=28.28 Aligned_cols=50 Identities=6% Similarity=0.155 Sum_probs=39.0
Q ss_pred eEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCCeEEEEEEcChhhhhhc
Q 006380 591 VKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEAK 644 (647)
Q Consensus 591 v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l~v~~~~~~~~~~~ 644 (647)
|.+|..+..-+|+.|||=.+......|++.|-+.... . +.+++-++|-..
T Consensus 139 I~Si~~~d~lkGYIyVEA~~~~~V~~ai~Gi~~vy~~--~--~~lVPi~Em~dl 188 (200)
T 2exu_A 139 ILSIFQRDNYTGRIYIEAPKQSVIEKFCNGVPDIYIS--Q--KLLIPVQELPLL 188 (200)
T ss_dssp CCEEECCTTSTTEEEEECSCHHHHHHHHTTCTTEEEE--E--EEECCGGGHHHH
T ss_pred EEEEEecCCCcEEEEEEECCHHHHHHHHhhhhhhhcC--C--ceEecHHHhHhH
Confidence 7777777556999999999999999999888886332 3 368888887543
No 409
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=21.96 E-value=88 Score=24.92 Aligned_cols=52 Identities=8% Similarity=0.164 Sum_probs=36.7
Q ss_pred CeEEEEEecCCCceEEEEeCCHHHHHHHHHHhcCcccCCeEEEEEEcChhhhhh
Q 006380 590 RVKHIYVDKRSAGFVYLRFESTEAAASAQRAMHMRWFARRLISAIFMKPEDYEA 643 (647)
Q Consensus 590 ~v~~v~l~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~Gr~l~v~~~~~~~~~~ 643 (647)
.|.+|..+..-+|+.|||=.+..+...|+..+-+... ..+...+++-+++..
T Consensus 40 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~v~~--~~~~~~lVpi~Em~~ 91 (106)
T 3h7h_B 40 QIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLRL--GYWNQQMVPIKEMTD 91 (106)
T ss_dssp CCCEEEECTTCCSEEEEEESSHHHHHHHHTTCGGGGG--GSSCCEECCGGGTTG
T ss_pred ceEEEEecCCCceEEEEEeCCHHHHHHHHhcccceec--ccccceEEcHHHHHH
Confidence 5888888877799999999999999999876655443 112234555555443
No 410
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=20.54 E-value=1.7e+02 Score=25.46 Aligned_cols=60 Identities=17% Similarity=0.152 Sum_probs=39.1
Q ss_pred ceEEEcCCCC-C--------CCHHHHHHhh--ccCCCeeEEEeccCCCCCCeeeEEEEEeCCHH-HHHHHHHHHcC
Q 006380 378 RKLYVGNLHF-N--------MTETQLRKLF--EPFGPVELVQLPLDIETGQCKGFGFVQFAQLE-HAKAAQSALNG 441 (647)
Q Consensus 378 ~~l~v~nLp~-~--------~~e~~l~~~f--~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~-~A~~Al~~l~g 441 (647)
-.++|.|+|. . .....|++.| ..|.++.-. .+.++ .-..|+|.|+|.+-- --..|+ .|..
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~-~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~-~fek 84 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVR-PLWNY--LGHSGTAIVEFNKDWNGLHNGL-LFDK 84 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEE-EEECS--SBEEEEEEEECCSSHHHHHHHH-HHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeE-ecccC--CCCceeEEEEecCChHHHHHHH-HHHH
Confidence 5778888887 2 2347889877 899887643 33442 236899999997643 344454 4443
Done!