Query 006381
Match_columns 647
No_of_seqs 372 out of 2590
Neff 9.0
Searched_HMMs 46136
Date Thu Mar 28 22:27:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006381.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006381hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100 Molecular chaperones G 100.0 6E-137 1E-141 1004.7 61.8 611 6-622 35-647 (663)
2 PTZ00009 heat shock 70 kDa pro 100.0 2E-114 5E-119 971.2 78.7 639 7-647 4-653 (653)
3 PTZ00186 heat shock 70 kDa pre 100.0 3E-104 7E-109 880.5 74.7 599 7-622 27-629 (657)
4 PRK13411 molecular chaperone D 100.0 4E-104 8E-109 887.8 74.7 599 7-622 2-605 (653)
5 KOG0101 Molecular chaperones H 100.0 2E-106 5E-111 854.8 53.9 615 1-619 1-615 (620)
6 PLN03184 chloroplast Hsp70; Pr 100.0 1E-103 2E-108 883.9 77.6 598 7-623 39-641 (673)
7 PRK13410 molecular chaperone D 100.0 1E-103 2E-108 881.0 73.7 598 7-618 2-607 (668)
8 PTZ00400 DnaK-type molecular c 100.0 1E-103 2E-108 883.9 74.0 596 6-620 40-640 (663)
9 PRK00290 dnaK molecular chaper 100.0 2E-102 5E-107 875.0 77.6 593 7-620 2-599 (627)
10 CHL00094 dnaK heat shock prote 100.0 7E-100 2E-104 851.6 75.8 593 7-618 2-599 (621)
11 TIGR02350 prok_dnaK chaperone 100.0 1.1E-99 2E-104 851.0 74.6 589 8-617 1-594 (595)
12 TIGR01991 HscA Fe-S protein as 100.0 2.3E-98 5E-103 834.0 75.0 584 9-618 1-585 (599)
13 PRK05183 hscA chaperone protei 100.0 3.3E-97 7E-102 826.2 73.3 583 7-618 19-601 (616)
14 KOG0102 Molecular chaperones m 100.0 2.7E-98 6E-103 759.8 46.0 601 6-622 26-631 (640)
15 PF00012 HSP70: Hsp70 protein; 100.0 3.1E-95 7E-100 823.6 68.5 598 9-618 1-602 (602)
16 PRK01433 hscA chaperone protei 100.0 3.8E-93 8.3E-98 786.0 70.1 554 7-611 19-572 (595)
17 COG0443 DnaK Molecular chapero 100.0 2.9E-91 6.2E-96 766.4 61.1 573 6-618 4-578 (579)
18 KOG0103 Molecular chaperones H 100.0 1.5E-90 3.3E-95 724.4 51.8 594 9-610 3-640 (727)
19 KOG0104 Molecular chaperones G 100.0 7.5E-81 1.6E-85 652.1 52.3 601 7-618 22-737 (902)
20 PRK11678 putative chaperone; P 100.0 1.3E-55 2.7E-60 471.3 39.0 337 9-386 2-448 (450)
21 PRK13928 rod shape-determining 100.0 3.4E-39 7.3E-44 337.6 33.0 307 10-386 6-324 (336)
22 PRK13929 rod-share determining 100.0 1.3E-38 2.7E-43 332.1 33.6 306 8-383 5-324 (335)
23 PRK13927 rod shape-determining 100.0 2.7E-36 5.9E-41 316.2 32.9 308 8-386 6-325 (334)
24 TIGR00904 mreB cell shape dete 100.0 1.4E-35 3.1E-40 310.1 35.6 307 9-385 4-327 (333)
25 PRK13930 rod shape-determining 100.0 1.3E-34 2.8E-39 303.9 35.0 309 8-386 9-329 (335)
26 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 1.6E-31 3.5E-36 271.7 23.0 306 8-383 2-319 (326)
27 TIGR02529 EutJ ethanolamine ut 100.0 2.6E-30 5.6E-35 255.4 23.4 202 119-381 37-238 (239)
28 COG1077 MreB Actin-like ATPase 100.0 1.6E-28 3.5E-33 239.1 25.9 311 7-387 6-333 (342)
29 PRK15080 ethanolamine utilizat 100.0 3.6E-27 7.8E-32 237.2 28.1 202 121-383 66-267 (267)
30 TIGR01174 ftsA cell division p 99.9 2.4E-23 5.3E-28 220.9 24.0 194 157-382 158-371 (371)
31 PRK09472 ftsA cell division pr 99.9 1.6E-22 3.4E-27 217.2 27.5 194 160-384 169-387 (420)
32 COG0849 ftsA Cell division ATP 99.8 4.8E-19 1E-23 184.9 26.1 198 158-386 166-381 (418)
33 cd00012 ACTIN Actin; An ubiqui 99.7 2.8E-16 6.1E-21 167.3 17.2 239 122-385 75-347 (371)
34 COG4820 EutJ Ethanolamine util 99.7 4.4E-16 9.5E-21 140.9 9.6 196 125-381 75-270 (277)
35 smart00268 ACTIN Actin. ACTIN 99.6 1.9E-15 4.2E-20 161.0 14.7 297 8-384 2-346 (373)
36 PRK13917 plasmid segregation p 99.6 4.6E-13 9.9E-18 139.9 23.5 212 142-388 109-339 (344)
37 PTZ00280 Actin-related protein 99.5 1.4E-12 2.9E-17 140.6 24.6 225 122-360 82-336 (414)
38 TIGR03739 PRTRC_D PRTRC system 99.4 7.4E-12 1.6E-16 130.1 18.7 209 142-383 101-318 (320)
39 PF00022 Actin: Actin; InterP 99.4 7.8E-12 1.7E-16 134.4 18.6 311 7-385 4-367 (393)
40 PTZ00452 actin; Provisional 99.4 3.3E-11 7.1E-16 127.7 21.4 215 143-384 100-348 (375)
41 PTZ00004 actin-2; Provisional 99.4 4.6E-11 1E-15 127.1 21.3 233 122-384 81-351 (378)
42 TIGR01175 pilM type IV pilus a 99.4 4.7E-11 1E-15 126.1 20.4 161 155-360 141-306 (348)
43 PTZ00281 actin; Provisional 99.3 4.9E-11 1.1E-15 126.7 18.7 215 143-384 101-349 (376)
44 PF11104 PilM_2: Type IV pilus 99.3 1.1E-10 2.3E-15 122.6 19.6 181 157-383 136-339 (340)
45 PTZ00466 actin-like protein; P 99.3 4.6E-10 1E-14 119.1 20.8 215 143-384 106-353 (380)
46 PF06406 StbA: StbA protein; 99.1 2.2E-10 4.7E-15 118.7 10.6 174 172-380 141-316 (318)
47 TIGR00241 CoA_E_activ CoA-subs 99.0 2.4E-08 5.3E-13 99.9 18.2 169 176-382 74-248 (248)
48 COG4972 PilM Tfp pilus assembl 98.9 4.6E-07 9.9E-12 89.8 23.0 157 159-360 151-311 (354)
49 KOG0679 Actin-related protein 98.9 2.2E-07 4.8E-12 93.3 20.1 116 122-250 86-202 (426)
50 COG5277 Actin and related prot 98.8 1.4E-07 3.1E-12 100.7 18.5 98 143-250 106-204 (444)
51 TIGR03192 benz_CoA_bzdQ benzoy 98.6 5.9E-06 1.3E-10 82.7 20.5 71 310-385 217-288 (293)
52 TIGR03286 methan_mark_15 putat 98.6 3.1E-06 6.8E-11 87.9 19.1 71 309-384 331-402 (404)
53 PF07520 SrfB: Virulence facto 98.5 4.3E-05 9.4E-10 87.0 25.4 329 53-387 331-836 (1002)
54 TIGR02259 benz_CoA_red_A benzo 98.4 8.4E-06 1.8E-10 83.7 16.0 179 175-383 249-432 (432)
55 COG1924 Activator of 2-hydroxy 98.4 6.8E-05 1.5E-09 76.1 20.9 159 202-386 232-391 (396)
56 PRK10331 L-fuculokinase; Provi 98.3 0.00011 2.5E-09 80.7 24.3 82 302-388 357-439 (470)
57 TIGR02628 fuculo_kin_coli L-fu 98.3 7.2E-05 1.6E-09 82.2 22.2 80 302-388 361-443 (465)
58 TIGR02261 benz_CoA_red_D benzo 98.3 0.00016 3.4E-09 71.6 22.0 72 309-383 187-262 (262)
59 PRK13317 pantothenate kinase; 98.3 0.00015 3.3E-09 73.2 21.3 48 337-384 223-273 (277)
60 PRK15027 xylulokinase; Provisi 98.2 0.00026 5.7E-09 78.2 24.6 80 302-388 355-437 (484)
61 PF08841 DDR: Diol dehydratase 98.2 3.2E-05 7E-10 75.0 14.4 190 166-382 105-328 (332)
62 PRK10719 eutA reactivating fac 98.2 6.1E-06 1.3E-10 86.9 9.8 83 145-242 90-184 (475)
63 TIGR01314 gntK_FGGY gluconate 98.0 0.00039 8.6E-09 77.2 20.1 51 336-388 401-451 (505)
64 KOG0676 Actin and related prot 97.9 0.00017 3.6E-09 74.8 14.3 189 144-360 100-314 (372)
65 KOG0677 Actin-related protein 97.8 0.00044 9.5E-09 66.2 14.0 222 143-388 101-364 (389)
66 COG1070 XylB Sugar (pentulose 97.8 0.0052 1.1E-07 68.1 24.4 81 303-387 370-450 (502)
67 COG4457 SrfB Uncharacterized p 97.3 0.06 1.3E-06 58.6 21.9 52 336-387 778-848 (1014)
68 KOG0797 Actin-related protein 97.2 0.0037 7.9E-08 65.7 12.3 122 116-249 195-322 (618)
69 PF01869 BcrAD_BadFG: BadF/Bad 97.1 0.12 2.5E-06 52.5 22.4 71 310-383 197-271 (271)
70 PF02782 FGGY_C: FGGY family o 97.0 0.0012 2.6E-08 63.6 6.4 75 309-385 121-196 (198)
71 PF14574 DUF4445: Domain of un 96.8 0.027 5.8E-07 59.9 14.3 86 297-383 289-375 (412)
72 PF07318 DUF1464: Protein of u 96.7 0.065 1.4E-06 54.9 15.5 55 334-389 258-319 (343)
73 PF06277 EutA: Ethanolamine ut 96.5 0.019 4.2E-07 61.0 10.9 89 145-239 87-178 (473)
74 TIGR01315 5C_CHO_kinase FGGY-f 96.4 0.0097 2.1E-07 66.7 8.5 85 302-388 409-493 (541)
75 KOG0680 Actin-related protein 96.4 0.13 2.9E-06 51.4 15.1 101 143-248 93-198 (400)
76 COG1069 AraB Ribulose kinase [ 96.3 0.057 1.2E-06 58.0 13.0 181 200-388 269-481 (544)
77 PLN02669 xylulokinase 96.3 0.013 2.8E-07 65.7 8.8 76 304-385 417-492 (556)
78 smart00842 FtsA Cell division 96.2 0.011 2.5E-07 56.2 6.9 30 157-186 157-186 (187)
79 PRK11031 guanosine pentaphosph 96.0 0.095 2.1E-06 57.9 13.4 79 158-243 93-171 (496)
80 PRK00047 glpK glycerol kinase; 95.8 0.028 6.1E-07 62.4 8.2 76 311-388 377-453 (498)
81 TIGR01312 XylB D-xylulose kina 95.7 0.033 7.2E-07 61.6 8.7 51 336-388 390-440 (481)
82 TIGR01311 glycerol_kin glycero 95.7 0.028 6.2E-07 62.3 7.8 51 336-388 399-449 (493)
83 PTZ00294 glycerol kinase-like 95.6 0.034 7.3E-07 61.9 8.3 80 304-388 376-456 (504)
84 PRK04123 ribulokinase; Provisi 95.6 0.029 6.4E-07 63.1 7.9 81 303-388 408-489 (548)
85 TIGR01234 L-ribulokinase L-rib 95.6 0.036 7.8E-07 62.1 8.3 82 302-388 404-486 (536)
86 PRK10854 exopolyphosphatase; P 95.5 0.12 2.7E-06 57.3 12.2 58 159-218 99-156 (513)
87 TIGR00555 panK_eukar pantothen 95.4 0.18 3.8E-06 50.8 11.4 47 335-381 229-278 (279)
88 PLN02295 glycerol kinase 95.3 0.047 1E-06 60.8 8.0 51 336-388 412-462 (512)
89 KOG2517 Ribulose kinase and re 95.3 0.065 1.4E-06 58.0 8.5 74 314-389 391-465 (516)
90 TIGR02627 rhamnulo_kin rhamnul 95.2 0.051 1.1E-06 59.6 7.8 50 336-388 387-436 (454)
91 PRK10939 autoinducer-2 (AI-2) 95.0 0.064 1.4E-06 59.9 8.0 51 336-388 409-459 (520)
92 PRK09698 D-allose kinase; Prov 95.0 4.2 9.1E-05 41.8 20.8 49 336-384 236-295 (302)
93 PRK10640 rhaB rhamnulokinase; 94.8 0.075 1.6E-06 58.5 7.8 50 336-388 375-424 (471)
94 KOG2531 Sugar (pentulose and h 94.7 0.11 2.4E-06 54.4 8.0 56 328-385 434-489 (545)
95 PF14450 FtsA: Cell division p 94.6 0.069 1.5E-06 46.8 5.6 48 201-248 1-53 (120)
96 TIGR03706 exo_poly_only exopol 94.6 0.37 7.9E-06 49.7 11.8 73 161-242 90-163 (300)
97 KOG0681 Actin-related protein 93.8 0.45 9.8E-06 51.0 10.3 117 122-250 95-216 (645)
98 PRK09557 fructokinase; Reviewe 93.6 9.9 0.00022 39.0 21.1 48 336-383 244-299 (301)
99 PRK09604 UGMP family protein; 93.3 9.5 0.0002 39.9 19.3 52 336-387 254-310 (332)
100 COG4819 EutA Ethanolamine util 93.0 0.86 1.9E-05 46.0 10.2 89 145-239 89-180 (473)
101 TIGR00744 ROK_glcA_fam ROK fam 92.8 6.5 0.00014 40.7 17.5 93 120-216 33-140 (318)
102 KOG0681 Actin-related protein 92.4 0.13 2.8E-06 55.0 3.9 66 320-385 540-614 (645)
103 PTZ00288 glucokinase 1; Provis 92.2 8.3 0.00018 41.3 17.3 21 6-26 25-45 (405)
104 PF14450 FtsA: Cell division p 91.2 0.11 2.3E-06 45.6 1.5 20 9-28 1-20 (120)
105 PRK14878 UGMP family protein; 91.2 21 0.00045 37.1 19.1 24 337-360 242-265 (323)
106 PRK14101 bifunctional glucokin 90.1 20 0.00044 41.2 19.2 73 312-385 245-330 (638)
107 PF02541 Ppx-GppA: Ppx/GppA ph 89.7 0.51 1.1E-05 48.2 5.3 75 162-243 77-151 (285)
108 COG0248 GppA Exopolyphosphatas 89.4 3 6.5E-05 45.7 11.0 95 121-218 51-148 (492)
109 PF03702 UPF0075: Uncharacteri 89.2 1.3 2.9E-05 46.5 7.9 76 308-386 259-338 (364)
110 PLN02666 5-oxoprolinase 89.1 5.2 0.00011 49.0 13.7 77 303-382 454-531 (1275)
111 COG0554 GlpK Glycerol kinase [ 89.0 1.4 3E-05 47.1 7.8 81 303-388 371-452 (499)
112 COG1548 Predicted transcriptio 88.6 1.3 2.9E-05 43.1 6.6 73 127-217 75-148 (330)
113 PF01968 Hydantoinase_A: Hydan 85.3 0.56 1.2E-05 48.0 2.4 65 314-381 219-283 (290)
114 PF02543 CmcH_NodU: Carbamoylt 84.1 24 0.00053 37.2 14.1 82 301-387 131-215 (360)
115 PLN02920 pantothenate kinase 1 83.9 8 0.00017 40.7 10.0 49 335-383 296-350 (398)
116 PTZ00340 O-sialoglycoprotein e 83.4 62 0.0013 33.9 19.0 39 317-360 249-287 (345)
117 PRK09585 anmK anhydro-N-acetyl 82.8 7.1 0.00015 41.1 9.3 73 310-386 263-339 (365)
118 TIGR03281 methan_mark_12 putat 82.7 8.7 0.00019 38.8 9.3 172 177-388 129-314 (326)
119 TIGR00329 gcp_kae1 metallohydr 82.5 19 0.00042 37.0 12.4 36 320-360 247-282 (305)
120 TIGR03722 arch_KAE1 universal 80.0 79 0.0017 32.8 18.6 42 337-378 243-289 (322)
121 PRK03011 butyrate kinase; Prov 78.6 4.8 0.0001 42.4 6.5 47 336-382 295-344 (358)
122 PRK09605 bifunctional UGMP fam 76.8 1.3E+02 0.0029 33.6 21.7 51 337-387 246-301 (535)
123 PRK00976 hypothetical protein; 76.2 12 0.00026 38.6 8.2 49 336-387 263-313 (326)
124 KOG2708 Predicted metalloprote 76.0 25 0.00054 33.9 9.6 64 313-382 236-301 (336)
125 COG2377 Predicted molecular ch 75.5 45 0.00098 34.8 12.1 54 333-386 287-344 (371)
126 COG0145 HyuA N-methylhydantoin 74.9 2.9 6.3E-05 47.6 3.8 42 173-217 255-296 (674)
127 KOG1385 Nucleoside phosphatase 73.6 8.5 0.00018 40.5 6.4 158 7-217 67-231 (453)
128 PF00370 FGGY_N: FGGY family o 73.5 2.9 6.4E-05 41.5 3.1 18 8-25 1-18 (245)
129 TIGR00143 hypF [NiFe] hydrogen 73.0 7.6 0.00016 44.9 6.6 49 336-384 658-711 (711)
130 cd06007 R3H_DEXH_helicase R3H 72.6 13 0.00028 27.9 5.5 29 145-173 16-44 (59)
131 COG0533 QRI7 Metal-dependent p 72.2 1.3E+02 0.0028 31.3 17.0 210 118-360 41-285 (342)
132 smart00732 YqgFc Likely ribonu 70.9 4 8.8E-05 33.8 2.9 18 8-25 2-19 (99)
133 PTZ00107 hexokinase; Provision 69.8 1.8E+02 0.0038 32.0 19.1 81 305-387 370-461 (464)
134 COG5026 Hexokinase [Carbohydra 67.7 24 0.00051 37.6 8.1 27 5-31 73-102 (466)
135 PRK10939 autoinducer-2 (AI-2) 67.1 4.5 9.7E-05 45.2 3.1 19 7-25 3-21 (520)
136 COG2971 Predicted N-acetylgluc 67.1 1.5E+02 0.0033 30.2 21.4 182 173-387 99-293 (301)
137 PTZ00294 glycerol kinase-like 66.8 4.6 0.0001 44.9 3.2 19 8-26 3-21 (504)
138 PLN02362 hexokinase 65.2 38 0.00083 37.4 9.7 21 5-25 93-113 (509)
139 PF03630 Fumble: Fumble ; Int 65.0 1.3E+02 0.0029 31.4 13.2 47 336-382 287-339 (341)
140 PF03652 UPF0081: Uncharacteri 64.7 6.6 0.00014 35.0 3.1 20 8-27 2-21 (135)
141 PRK09343 prefoldin subunit bet 64.6 97 0.0021 27.0 10.7 51 566-620 62-112 (121)
142 cd02640 R3H_NRF R3H domain of 64.3 26 0.00057 26.3 5.8 42 132-174 5-46 (60)
143 PLN02405 hexokinase 63.7 37 0.0008 37.4 9.2 21 5-25 93-113 (497)
144 cd00529 RuvC_resolvase Hollida 61.8 11 0.00023 34.5 4.1 25 8-32 1-27 (154)
145 PF08735 DUF1786: Putative pyr 61.5 1.1E+02 0.0023 30.5 11.0 97 140-243 111-209 (254)
146 PRK00047 glpK glycerol kinase; 61.2 7.3 0.00016 43.3 3.4 19 7-25 5-23 (498)
147 PRK04123 ribulokinase; Provisi 60.1 8.1 0.00018 43.5 3.6 19 7-25 3-21 (548)
148 TIGR01234 L-ribulokinase L-rib 59.5 8.4 0.00018 43.2 3.5 18 8-25 2-19 (536)
149 TIGR03123 one_C_unchar_1 proba 59.5 6.5 0.00014 40.5 2.4 19 199-217 128-146 (318)
150 COG1940 NagC Transcriptional r 58.6 78 0.0017 32.5 10.4 128 3-209 2-143 (314)
151 PLN02914 hexokinase 57.6 55 0.0012 36.0 9.2 20 6-25 94-113 (490)
152 PLN02295 glycerol kinase 57.3 8.7 0.00019 42.8 3.2 21 8-28 1-22 (512)
153 PF13941 MutL: MutL protein 54.7 10 0.00022 41.1 3.0 33 9-45 2-36 (457)
154 PRK13310 N-acetyl-D-glucosamin 54.5 1.2E+02 0.0026 31.0 10.9 48 336-383 245-300 (303)
155 COG4012 Uncharacterized protei 54.2 66 0.0014 31.9 8.0 89 150-251 186-277 (342)
156 TIGR01311 glycerol_kin glycero 54.2 10 0.00023 42.0 3.1 18 8-25 2-19 (493)
157 PRK00109 Holliday junction res 54.1 15 0.00032 32.9 3.5 21 7-27 4-24 (138)
158 TIGR01315 5C_CHO_kinase FGGY-f 53.8 10 0.00022 42.5 3.1 17 9-25 2-18 (541)
159 PLN02596 hexokinase-like 52.5 96 0.0021 34.2 10.0 21 5-25 94-114 (490)
160 COG0816 Predicted endonuclease 52.0 15 0.00032 33.0 3.1 21 7-27 2-22 (141)
161 PRK05082 N-acetylmannosamine k 51.5 58 0.0013 33.1 8.0 49 336-384 233-287 (291)
162 PRK13310 N-acetyl-D-glucosamin 50.5 54 0.0012 33.6 7.6 39 168-209 95-133 (303)
163 PRK00039 ruvC Holliday junctio 47.4 17 0.00037 33.6 2.9 19 7-25 2-20 (164)
164 KOG1369 Hexokinase [Carbohydra 47.2 52 0.0011 35.8 6.8 65 149-219 184-251 (474)
165 cd02639 R3H_RRM R3H domain of 47.0 41 0.00088 25.3 4.3 30 145-174 17-46 (60)
166 PF02075 RuvC: Crossover junct 46.5 32 0.00068 31.3 4.5 24 9-32 1-26 (149)
167 PLN02669 xylulokinase 46.2 17 0.00037 40.9 3.2 20 6-25 7-26 (556)
168 PRK13331 pantothenate kinase; 45.7 29 0.00064 34.5 4.4 28 1-28 1-28 (251)
169 cd02641 R3H_Smubp-2_like R3H d 45.3 89 0.0019 23.4 6.0 28 146-173 18-45 (60)
170 COG3426 Butyrate kinase [Energ 44.5 68 0.0015 32.2 6.5 48 334-381 294-344 (358)
171 cd02646 R3H_G-patch R3H domain 43.4 64 0.0014 23.9 4.9 41 130-173 3-43 (58)
172 PRK13318 pantothenate kinase; 42.9 25 0.00055 35.2 3.6 20 9-28 2-21 (258)
173 COG2192 Predicted carbamoyl tr 42.9 5.2E+02 0.011 28.8 22.8 81 303-388 256-338 (555)
174 PRK13321 pantothenate kinase; 42.6 26 0.00056 35.1 3.6 19 9-27 2-20 (256)
175 COG4012 Uncharacterized protei 42.3 62 0.0013 32.0 5.8 73 200-279 2-97 (342)
176 COG2441 Predicted butyrate kin 41.5 1.2E+02 0.0027 30.3 7.7 54 335-388 272-335 (374)
177 PF08006 DUF1700: Protein of u 41.1 77 0.0017 29.7 6.4 55 550-613 5-61 (181)
178 KOG2008 BTK-associated SH3-dom 40.9 4.1E+02 0.0088 27.1 11.3 47 574-620 186-235 (426)
179 PLN02902 pantothenate kinase 40.7 1.8E+02 0.0038 34.3 10.0 50 335-384 345-400 (876)
180 PF06008 Laminin_I: Laminin Do 40.4 1.7E+02 0.0037 29.3 9.1 16 574-589 188-203 (264)
181 KOG0103 Molecular chaperones H 39.6 72 0.0016 36.1 6.5 62 544-615 653-725 (727)
182 PF15290 Syntaphilin: Golgi-lo 39.3 1.3E+02 0.0029 30.0 7.6 28 534-561 80-108 (305)
183 PF05957 DUF883: Bacterial pro 39.0 1.9E+02 0.0041 23.8 7.7 67 519-591 5-73 (94)
184 PF07820 TraC: TraC-like prote 38.4 83 0.0018 25.8 5.1 19 603-621 46-64 (92)
185 TIGR02707 butyr_kinase butyrat 38.2 51 0.0011 34.7 5.1 46 336-381 293-341 (351)
186 KOG0797 Actin-related protein 38.2 12 0.00027 40.2 0.5 51 337-387 527-591 (618)
187 TIGR03723 bact_gcp putative gl 37.3 4.8E+02 0.01 26.9 21.0 46 336-381 259-309 (314)
188 PF02685 Glucokinase: Glucokin 37.1 2.1E+02 0.0046 29.6 9.4 201 167-384 88-314 (316)
189 PF14574 DUF4445: Domain of un 36.9 1.1E+02 0.0025 32.8 7.4 45 309-353 56-100 (412)
190 PF00349 Hexokinase_1: Hexokin 36.5 51 0.0011 31.7 4.4 29 197-225 61-90 (206)
191 TIGR00250 RNAse_H_YqgF RNAse H 35.8 23 0.00051 31.3 1.8 17 10-26 1-17 (130)
192 PF10458 Val_tRNA-synt_C: Valy 34.7 1.7E+02 0.0037 22.3 6.2 43 545-587 13-55 (66)
193 KOG0104 Molecular chaperones G 34.1 3.2E+02 0.007 31.5 10.4 54 567-620 774-839 (902)
194 PF00349 Hexokinase_1: Hexokin 34.0 35 0.00075 32.9 2.8 38 151-188 163-203 (206)
195 PF01968 Hydantoinase_A: Hydan 33.0 30 0.00065 35.3 2.4 43 171-217 53-95 (290)
196 PF09921 DUF2153: Uncharacteri 33.0 3.3E+02 0.0072 23.7 11.5 100 521-620 13-116 (126)
197 PRK13326 pantothenate kinase; 33.0 53 0.0011 33.0 4.0 23 6-28 5-27 (262)
198 KOG2517 Ribulose kinase and re 32.7 64 0.0014 35.5 4.8 19 7-25 6-24 (516)
199 COG5185 HEC1 Protein involved 32.5 4.1E+02 0.0088 28.8 10.2 71 518-588 280-361 (622)
200 PRK11546 zraP zinc resistance 32.5 3.8E+02 0.0081 24.2 11.6 42 513-560 41-82 (143)
201 COG4296 Uncharacterized protei 31.9 79 0.0017 27.7 4.2 21 583-603 91-112 (156)
202 PLN02377 3-ketoacyl-CoA syntha 31.8 1.2E+02 0.0027 33.5 6.9 54 308-361 165-219 (502)
203 PRK00292 glk glucokinase; Prov 30.9 45 0.00099 34.4 3.3 44 167-210 88-139 (316)
204 PLN03170 chalcone synthase; Pr 30.8 1.5E+02 0.0034 31.8 7.4 50 312-361 103-153 (401)
205 PLN02939 transferase, transfer 30.7 2.8E+02 0.006 33.3 9.8 74 516-589 237-311 (977)
206 PLN03173 chalcone synthase; Pr 30.6 1.8E+02 0.0038 31.2 7.8 48 314-361 101-149 (391)
207 PRK13320 pantothenate kinase; 30.2 58 0.0013 32.3 3.7 21 8-28 3-23 (244)
208 PLN03172 chalcone synthase fam 29.7 1.8E+02 0.0039 31.2 7.7 53 309-361 96-149 (393)
209 PLN00130 succinate dehydrogena 29.7 7.3 0.00016 35.7 -2.4 21 7-27 57-77 (213)
210 cd04036 C2_cPLA2 C2 domain pre 28.8 3.6E+02 0.0078 22.8 8.2 61 431-496 53-115 (119)
211 PLN03184 chloroplast Hsp70; Pr 27.6 5.3E+02 0.011 29.9 11.5 37 571-607 566-606 (673)
212 PF07865 DUF1652: Protein of u 27.0 2E+02 0.0044 22.3 5.4 49 480-529 15-65 (69)
213 PF03646 FlaG: FlaG protein; 26.9 1.1E+02 0.0023 25.9 4.4 45 479-531 54-99 (107)
214 KOG0678 Actin-related protein 26.8 7.3E+02 0.016 25.7 13.3 100 144-248 107-208 (415)
215 KOG3133 40 kDa farnesylated pr 26.7 2.1E+02 0.0044 28.5 6.6 59 546-611 142-204 (267)
216 KOG2707 Predicted metalloprote 26.6 7.6E+02 0.017 25.9 20.0 222 121-360 79-329 (405)
217 KOG1386 Nucleoside phosphatase 26.5 8.9E+02 0.019 26.6 12.9 22 197-218 160-181 (501)
218 TIGR02627 rhamnulo_kin rhamnul 26.0 34 0.00073 37.5 1.4 16 10-25 1-16 (454)
219 KOG2872 Uroporphyrinogen decar 25.4 2E+02 0.0042 29.1 6.2 69 302-374 219-287 (359)
220 PLN03168 chalcone synthase; Pr 24.9 2.3E+02 0.0049 30.4 7.4 54 308-361 94-148 (389)
221 PRK00180 acetate kinase A/prop 24.8 1.1E+02 0.0024 32.7 4.9 45 314-361 304-349 (402)
222 TIGR03545 conserved hypothetic 24.6 4.1E+02 0.009 29.9 9.5 102 517-622 162-273 (555)
223 PF06008 Laminin_I: Laminin Do 24.6 4.4E+02 0.0095 26.3 9.1 17 597-613 189-205 (264)
224 TIGR01312 XylB D-xylulose kina 24.5 43 0.00093 36.9 1.9 16 10-25 1-16 (481)
225 TIGR00671 baf pantothenate kin 24.1 76 0.0017 31.4 3.4 19 10-28 2-20 (243)
226 COG5026 Hexokinase [Carbohydra 23.9 80 0.0017 33.8 3.5 30 197-226 73-103 (466)
227 PF00815 Histidinol_dh: Histid 23.6 1.2E+02 0.0026 32.5 4.8 49 143-191 137-186 (412)
228 PF08392 FAE1_CUT1_RppA: FAE1/ 23.6 1.7E+02 0.0038 29.7 5.7 44 318-361 86-130 (290)
229 PRK11199 tyrA bifunctional cho 23.5 6.9E+02 0.015 26.5 10.7 51 304-358 67-120 (374)
230 PF04848 Pox_A22: Poxvirus A22 23.5 1.2E+02 0.0026 27.4 4.1 25 8-32 2-28 (143)
231 TIGR01319 glmL_fam conserved h 23.3 49 0.0011 35.8 1.9 30 12-45 1-32 (463)
232 PRK04406 hypothetical protein; 23.2 3.7E+02 0.0079 21.2 6.3 22 599-620 38-59 (75)
233 COG0554 GlpK Glycerol kinase [ 22.8 68 0.0015 34.8 2.8 20 6-25 4-23 (499)
234 PF13941 MutL: MutL protein 22.6 2E+02 0.0043 31.4 6.3 47 201-247 2-49 (457)
235 PF05378 Hydant_A_N: Hydantoin 22.4 1.1E+02 0.0023 28.7 3.8 18 10-27 2-19 (176)
236 COG1334 FlaG Uncharacterized f 22.1 2.2E+02 0.0048 24.7 5.2 42 480-529 67-109 (120)
237 COG5418 Predicted secreted pro 21.9 2.5E+02 0.0055 25.1 5.6 69 272-344 30-104 (164)
238 PLN00078 photosystem I reactio 21.3 4.9E+02 0.011 21.8 6.8 9 582-590 113-121 (122)
239 KOG1794 N-Acetylglucosamine ki 21.1 3E+02 0.0064 28.0 6.6 51 338-388 265-319 (336)
240 PF03309 Pan_kinase: Type III 20.9 1.1E+02 0.0025 29.3 3.8 21 9-29 1-21 (206)
241 PF07066 DUF3882: Lactococcus 20.8 1.2E+02 0.0026 27.2 3.4 22 7-28 2-28 (159)
242 PLN02854 3-ketoacyl-CoA syntha 20.6 2.7E+02 0.0058 31.1 6.9 45 317-361 190-235 (521)
243 PRK13324 pantothenate kinase; 20.4 1.1E+02 0.0023 30.7 3.6 20 9-28 2-21 (258)
244 PF00480 ROK: ROK family; Int 20.4 2.3E+02 0.0049 26.0 5.7 88 119-216 31-134 (179)
245 cd02198 YjgH_like YjgH belongs 20.4 1.7E+02 0.0038 24.7 4.5 48 314-361 33-82 (111)
246 PRK12408 glucokinase; Provisio 20.3 73 0.0016 33.3 2.5 24 4-27 13-36 (336)
247 COG1521 Pantothenate kinase ty 20.3 1.1E+02 0.0023 30.5 3.5 45 305-349 181-225 (251)
248 PTZ00009 heat shock 70 kDa pro 20.1 6E+02 0.013 29.3 10.0 38 544-587 568-605 (653)
No 1
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-137 Score=1004.70 Aligned_cols=611 Identities=68% Similarity=1.071 Sum_probs=596.5
Q ss_pred CCCEEEEecCccceEEEEEECCeeEEEecCCCCcccceEEEEcCCceEecHHHHHHHhhCcCchHHhhHHhhCCCCCChh
Q 006381 6 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDAT 85 (647)
Q Consensus 6 ~~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~ 85 (647)
...|||||||||||||+++++|.++||.|++|+|.+||+|+|.+++|++|+.|+++...||.+++++.||++|+.++++.
T Consensus 35 ~gtvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~derLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~~ 114 (663)
T KOG0100|consen 35 LGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDDERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDKS 114 (663)
T ss_pred cceEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccchhhhhhHhhcccccCcccceechHHHhCcccCChh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCeEEEecCCCcceEEEEEc-CceeEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHH
Q 006381 86 VQSDTKLWPFKVIAGAGDKPMIVVTYK-GEEKQFAAEEISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKD 164 (647)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~~~~~qr~~l~~ 164 (647)
+|++.+.+||+++ +.+++|.+.+... ++.+.|+|+++++|+|.++++.|+.|+|..++++|+||||||+++||+++++
T Consensus 115 vq~Dik~~Pfkvv-~k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATKD 193 (663)
T KOG0100|consen 115 VQKDIKFLPFKVV-NKDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKD 193 (663)
T ss_pred hhhhhhcCceEEE-cCCCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhcc
Confidence 9999999999999 6889999999987 6689999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHHHHHHH
Q 006381 165 AGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMV 244 (647)
Q Consensus 165 Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~ 244 (647)
|..+|||+++++|+||+|||++|++++.. .++++||||+||||||||++.+.+|.|+|+++.|+.++||.+||.+++
T Consensus 194 AGtIAgLnV~RIiNePTaAAIAYGLDKk~---gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm 270 (663)
T KOG0100|consen 194 AGTIAGLNVVRIINEPTAAAIAYGLDKKD---GEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVM 270 (663)
T ss_pred cceeccceEEEeecCccHHHHHhcccccC---CcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHHHH
Confidence 99999999999999999999999999886 688999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCcEEEEEccccCCceeEEeecHHHHHHHHHHHHHHHHHHHH
Q 006381 245 NHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYSPITRARFEELNMDLFRKCMEPVE 324 (647)
Q Consensus 245 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~d~~~~itr~~fe~~~~~~~~~~~~~i~ 324 (647)
+|+.+-|+++++.+++.+.+++.+|+++||++|+.||+...+.+.|+++++|.||+-++||+.||++..++|..++.+++
T Consensus 271 ~~fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~ 350 (663)
T KOG0100|consen 271 EYFIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQ 350 (663)
T ss_pred HHHHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccccccchhhhhHHHHhhhHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHHHHHHHcCCCCccccceEEEeeec
Q 006381 325 KCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTP 404 (647)
Q Consensus 325 ~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~d~~~ 404 (647)
++|+++++.+.+|+.|+||||++|||.||++|+++|+|++.++.+||+||||+|||.+|..+||. ....++++.|++|
T Consensus 351 kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGe--e~t~divLLDv~p 428 (663)
T KOG0100|consen 351 KVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGE--EDTGDIVLLDVNP 428 (663)
T ss_pred HHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccc--cCcCcEEEEeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999986 4578899999999
Q ss_pred ccceEEeeCCEEEEEEeCCCCCCCcceEEeeeccCCCCcEEEEEeecccccccCCccceeEEecCCCCCCCCCCeeEEEE
Q 006381 405 LSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCF 484 (647)
Q Consensus 405 ~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~~ 484 (647)
+++||++.+|.|..+||||+.||+++++.|+++.|+|+.+.|.+|+|++.++++|..||+|.+.||||+|+|.|+|+|+|
T Consensus 429 LtlGIETvGGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpqIEVtF 508 (663)
T KOG0100|consen 429 LTLGIETVGGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQIEVTF 508 (663)
T ss_pred ccceeeeecceeeccccCCcccCccccceeeecccCCceEEEEEeeccccccccccccccccccCCCCCCCCCccEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCceEEEEEeeccCCcceeEEEecCCCCCCHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHhhccc-hh
Q 006381 485 DIDANGILNVSAEDKTTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTVKD-EK 563 (647)
Q Consensus 485 ~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ls~~e~~~~~~~~~~~~~~d~~~~~~~~a~n~lE~~i~~~r~~l~~-~~ 563 (647)
++|.||+|+|++.++.+|++.+++|+|+.++||+|+|++|.++.++|.++|+..+++.++||+||+|.|.+++.+.+ +.
T Consensus 509 evDangiL~VsAeDKgtg~~~kitItNd~~rLt~EdIerMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi~dkek 588 (663)
T KOG0100|consen 509 EVDANGILQVSAEDKGTGKKEKITITNDKGRLTPEDIERMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQIGDKEK 588 (663)
T ss_pred EEccCceEEEEeeccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhccCchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999976 45
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 006381 564 IGSKLAPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQGAGG 622 (647)
Q Consensus 564 ~~~~~~~~~~~~i~~~l~~~~~wl~~~~~~~~~~~~~k~~~l~~~~~~i~~r~~e~~~~ 622 (647)
+...+++++++.+...+++..+||++|.+|++++|++++++|+.+++||..++++.+||
T Consensus 589 Lg~Kl~~edKe~~e~av~e~~eWL~~n~~a~~Ee~~ek~kele~vv~PiisklY~~ag~ 647 (663)
T KOG0100|consen 589 LGGKLSDEDKETIEDAVEEALEWLESNQDASKEEFKEKKKELEAVVQPIISKLYGGAGG 647 (663)
T ss_pred hcccCChhHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 88899999999999999999999999999999999999999999999999999996644
No 2
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=2.5e-114 Score=971.18 Aligned_cols=639 Identities=78% Similarity=1.171 Sum_probs=600.4
Q ss_pred CCEEEEecCccceEEEEEECCeeEEEecCCCCcccceEEEEcCCceEecHHHHHHHhhCcCchHHhhHHhhCCCCCChhh
Q 006381 7 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDATV 86 (647)
Q Consensus 7 ~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~~ 86 (647)
..+||||||||||+||++++|.+++++|..|+|++||+|+|.++++++|..|+.+...+|.++++.+||+||+.++++.+
T Consensus 4 ~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~ 83 (653)
T PTZ00009 4 GPAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDSVV 83 (653)
T ss_pred ccEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCchhH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCCeEEEecCCCcceEEEEEcCceeEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHH
Q 006381 87 QSDTKLWPFKVIAGAGDKPMIVVTYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKDAG 166 (647)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~~~~~qr~~l~~Aa 166 (647)
+...+.+||.+....++.+.+.+.+.+....++|+++++++|++|++.|+.+++..+.++|||||+||++.||+++++||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa 163 (653)
T PTZ00009 84 QSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAG 163 (653)
T ss_pred hhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHHHH
Confidence 99999999999888888888888888877899999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHHHHHHHHH
Q 006381 167 VIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNH 246 (647)
Q Consensus 167 ~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~ 246 (647)
++|||++++|++||+|||++|++.... ..+.++||||+||||||+|++++.++.++++++.++..+||.+||.+|++|
T Consensus 164 ~~AGl~v~~li~EptAAAl~y~~~~~~--~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~~ 241 (653)
T PTZ00009 164 TIAGLNVLRIINEPTAAAIAYGLDKKG--DGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEF 241 (653)
T ss_pred HHcCCceeEEecchHHHHHHHhhhccC--CCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHHHH
Confidence 999999999999999999999876543 246789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc-cCCCCCCHHHHHHHHHHHHHHHHHcCCCCcEEEEEccccCCceeEEeecHHHHHHHHHHHHHHHHHHHHH
Q 006381 247 FVQEFKRKH-KKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYSPITRARFEELNMDLFRKCMEPVEK 325 (647)
Q Consensus 247 l~~~~~~~~-~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~d~~~~itr~~fe~~~~~~~~~~~~~i~~ 325 (647)
+.++|.+++ +.++..+++++.+|+.+||++|+.||.+..+.+.+++++++.+++++|||++||++|.|+++++..+|++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~~~~~i~~ 321 (653)
T PTZ00009 242 CVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPVEK 321 (653)
T ss_pred HHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCceEEEEECHHHHHHHHHHHHHHHHHHHHH
Confidence 999998877 4677788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHHHHHHHcCCCCccccceEEEeeecc
Q 006381 326 CLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPL 405 (647)
Q Consensus 326 ~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~d~~~~ 405 (647)
+|++++++..+|+.|+||||+||+|+|++.|++.|++.++...+||+++||+|||++|+++++...++++++.+.|++|+
T Consensus 322 ~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~~dv~p~ 401 (653)
T PTZ00009 322 VLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPL 401 (653)
T ss_pred HHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEEEeeccc
Confidence 99999999999999999999999999999999999767788899999999999999999999765567788999999999
Q ss_pred cceEEeeCCEEEEEEeCCCCCCCcceEEeeeccCCCCcEEEEEeecccccccCCccceeEEecCCCCCCCCCCeeEEEEE
Q 006381 406 SLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFD 485 (647)
Q Consensus 406 ~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~~~ 485 (647)
+||++..++.+.+||++|++||++++.+|++..|+|+.+.|.+|||++....+|..||+|.+.++|+.++|.+.|+|+|+
T Consensus 402 slgi~~~~~~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~ 481 (653)
T PTZ00009 402 SLGLETAGGVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIEVTFD 481 (653)
T ss_pred ccCccccCCceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEecccccCCCCceEEEEEEcCCCCCCCCCceEEEEEE
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999889999999
Q ss_pred EcCCceEEEEEeeccCCcceeEEEecCCCCCCHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHhhccchhhc
Q 006381 486 IDANGILNVSAEDKTTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTVKDEKIG 565 (647)
Q Consensus 486 ~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ls~~e~~~~~~~~~~~~~~d~~~~~~~~a~n~lE~~i~~~r~~l~~~~~~ 565 (647)
+|.||+|+|++.+..++++..+++.....+|++++++++++++.++..+|+..+++.+++|+||+|||++|++|+++++.
T Consensus 482 id~~Gil~v~~~~~~t~~~~~~~i~~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~eakN~lEs~Iy~~r~~L~~~~~~ 561 (653)
T PTZ00009 482 IDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTLQDEKVK 561 (653)
T ss_pred ECCCCeEEEEEecccCCceeeEEEeeccccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999998887667899999999999999999999999999999999999999999999765688
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCC---------CCCCC-
Q 006381 566 SKLAPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQGAGGDMGGAMDD---------DVPAG- 635 (647)
Q Consensus 566 ~~~~~~~~~~i~~~l~~~~~wl~~~~~~~~~~~~~k~~~l~~~~~~i~~r~~e~~~~~~~~~~~~---------~~~~~- 635 (647)
.++++++++++.+.++++++||+++.+++.++|++++++|+++++||..|++.+++|+||+.||+ +++||
T Consensus 562 ~~~t~ee~~~l~~~l~~~~~wL~~~~~~~~~~~~~kl~eL~~~~~pi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (653)
T PTZ00009 562 GKLSDSDKATIEKAIDEALEWLEKNQLAEKEEFEHKQKEVESVCNPIMTKMYQAAGGGMPGGMPGGMPGGMPGGAGPAGA 641 (653)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 99999999999999999999999888889999999999999999999999988776655544443 34444
Q ss_pred CCCCCCCCCCCC
Q 006381 636 GSGAGPKIEEVD 647 (647)
Q Consensus 636 ~~~~~~~~~~~~ 647 (647)
|++.||+|||||
T Consensus 642 ~~~~~~~~~~~~ 653 (653)
T PTZ00009 642 GASSGPTVEEVD 653 (653)
T ss_pred CCCCCCccccCC
Confidence 888999999998
No 3
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=3.3e-104 Score=880.54 Aligned_cols=599 Identities=46% Similarity=0.761 Sum_probs=557.9
Q ss_pred CCEEEEecCccceEEEEEECCeeEEEecCCCCcccceEEEEcCCceEecHHHHHHHhhCcCchHHhhHHhhCCCCCChhh
Q 006381 7 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDATV 86 (647)
Q Consensus 7 ~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~~ 86 (647)
..+||||||||||+||++++|.+++++|..|.+.+||+|+|.++++++|..|+.+...+|.++++++||+||+++.++.+
T Consensus 27 ~~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~v 106 (657)
T PTZ00186 27 GDVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEHI 106 (657)
T ss_pred ceEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccHHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCCeEEEecCCCcceEEEEEcCceeEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHH
Q 006381 87 QSDTKLWPFKVIAGAGDKPMIVVTYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKDAG 166 (647)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~~~~~qr~~l~~Aa 166 (647)
+...+.+||.++...++...+.. +....++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||
T Consensus 107 ~~~~~~~p~~vv~~~~~~~~i~~---~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa 183 (657)
T PTZ00186 107 QKDIKNVPYKIVRAGNGDAWVQD---GNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAG 183 (657)
T ss_pred HHhhccCcEEEEEcCCCceEEEe---CCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHH
Confidence 99999999999876666554432 224679999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHHHHHHHHH
Q 006381 167 VIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNH 246 (647)
Q Consensus 167 ~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~ 246 (647)
++|||+++++++||+|||++|++... .+.++||||+||||||+|++++.++.++++++.|+.++||++||.+|++|
T Consensus 184 ~~AGl~v~rlInEPtAAAlayg~~~~----~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~~ 259 (657)
T PTZ00186 184 TIAGLNVIRVVNEPTAAALAYGMDKT----KDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDY 259 (657)
T ss_pred HHcCCCeEEEEcChHHHHHHHhccCC----CCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHHH
Confidence 99999999999999999999987654 36799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCcEEEEEccccCC----ceeEEeecHHHHHHHHHHHHHHHHHH
Q 006381 247 FVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEG----IDFYSPITRARFEELNMDLFRKCMEP 322 (647)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~----~d~~~~itr~~fe~~~~~~~~~~~~~ 322 (647)
+.++|.++++.++..+++.+.+|+.+||++|+.||....+.+.++.+..+ .++.+.|||++|+++|.|++++++.+
T Consensus 260 ~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~~ 339 (657)
T PTZ00186 260 ILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIAP 339 (657)
T ss_pred HHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHHH
Confidence 99999999998888889999999999999999999999988888765432 45889999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHHHHHHHcCCCCccccceEEEee
Q 006381 323 VEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDV 402 (647)
Q Consensus 323 i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~d~ 402 (647)
++++|+++++++.+|+.|+||||+||||.|++.|++.| +.++...+||++|||+|||++|+++++. .+++.+.|+
T Consensus 340 v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~f-g~~~~~~~nPdeaVA~GAAi~a~~l~~~----~~~~~l~Dv 414 (657)
T PTZ00186 340 CKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFF-QKDPFRGVNPDEAVALGAATLGGVLRGD----VKGLVLLDV 414 (657)
T ss_pred HHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHh-CCCccccCCCchHHHHhHHHHHHHhccc----cCceEEEee
Confidence 99999999999999999999999999999999999999 4666788999999999999999999863 567899999
Q ss_pred ecccceEEeeCCEEEEEEeCCCCCCCcceEEeeeccCCCCcEEEEEeecccccccCCccceeEEecCCCCCCCCCCeeEE
Q 006381 403 TPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 482 (647)
Q Consensus 403 ~~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v 482 (647)
+|++||+++.++.+.+|||||++||++++..|++..|+|+.+.|.||||++..+.+|..||+|.|.|+||.|+|.++|+|
T Consensus 415 ~p~slgie~~~g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~~~~~~n~~lg~~~l~~ip~~~~G~~~I~V 494 (657)
T PTZ00186 415 TPLSLGIETLGGVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEV 494 (657)
T ss_pred ccccccceecCCEEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEecccccccccccceEEEcCCCCCCCCCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCceEEEEEeeccCCcceeEEEecCCCCCCHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHhhccch
Q 006381 483 CFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTVKDE 562 (647)
Q Consensus 483 ~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ls~~e~~~~~~~~~~~~~~d~~~~~~~~a~n~lE~~i~~~r~~l~~~ 562 (647)
+|++|.||+|+|++.++.||++.+++|... ..||+++++++.++.+++..+|+..+++.+++|+++.+++.+++.+++
T Consensus 495 tf~iD~nGiL~V~a~d~~tg~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~- 572 (657)
T PTZ00186 495 TFDIDANGICHVTAKDKATGKTQNITITAN-GGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQLGE- 572 (657)
T ss_pred EEEEcCCCEEEEEEEEccCCcEEEEEeccC-ccCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh-
Confidence 999999999999999999999999999864 459999999999999999999999999999999999999999999965
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 006381 563 KIGSKLAPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQGAGG 622 (647)
Q Consensus 563 ~~~~~~~~~~~~~i~~~l~~~~~wl~~~~~~~~~~~~~k~~~l~~~~~~i~~r~~e~~~~ 622 (647)
. ..+++++++.+...++.+++||..+ +.+.+++++++++|++.+.++..+++.+++|
T Consensus 573 -~-~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 629 (657)
T PTZ00186 573 -W-KYVSDAEKENVKTLVAELRKAMENP-NVAKDDLAAATDKLQKAVMECGRTEYQQAAA 629 (657)
T ss_pred -h-ccCCHHHHHHHHHHHHHHHHHHhcC-CcCHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 2 4579999999999999999999843 4467999999999999999999988765533
No 4
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=3.6e-104 Score=887.75 Aligned_cols=599 Identities=51% Similarity=0.798 Sum_probs=557.0
Q ss_pred CCEEEEecCccceEEEEEECCeeEEEecCCCCcccceEEEEcC-CceEecHHHHHHHhhCcCchHHhhHHhhCCCCCChh
Q 006381 7 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTD-SERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDAT 85 (647)
Q Consensus 7 ~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~-~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~ 85 (647)
+.+||||||||||+||++++|.+.+++|..|+|.+||+|+|.+ +++++|..|+.+...+|.++++++|||||+.++++.
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 81 (653)
T PRK13411 2 GKVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTE 81 (653)
T ss_pred CcEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchh
Confidence 3699999999999999999999999999999999999999975 589999999999999999999999999999998864
Q ss_pred hhhcccCCCeEEEecCCCcceEEEEEcCceeEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHH
Q 006381 86 VQSDTKLWPFKVIAGAGDKPMIVVTYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKDA 165 (647)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~~~~~qr~~l~~A 165 (647)
...+.+||.++...++...+.+ . ...++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++|
T Consensus 82 --~~~~~~~~~~v~~~~~~~~~~i--~--~~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 155 (653)
T PRK13411 82 --EERSRVPYTCVKGRDDTVNVQI--R--GRNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDA 155 (653)
T ss_pred --HHhhcCCceEEecCCCceEEEE--C--CEEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHH
Confidence 3457889998876665544443 3 357999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHHHHHHHH
Q 006381 166 GVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVN 245 (647)
Q Consensus 166 a~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~ 245 (647)
|++|||++++|++||+|||++|++.... .+.++||||+||||||+|++++.++.++++++.|+..+||.+||..|++
T Consensus 156 a~~AGl~v~~li~EPtAAAl~y~~~~~~---~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~~ 232 (653)
T PRK13411 156 GTIAGLEVLRIINEPTAAALAYGLDKQD---QEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVD 232 (653)
T ss_pred HHHcCCCeEEEecchHHHHHHhcccccC---CCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHHH
Confidence 9999999999999999999999886543 4678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCcEEEEEccccC----CceeEEeecHHHHHHHHHHHHHHHHH
Q 006381 246 HFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYE----GIDFYSPITRARFEELNMDLFRKCME 321 (647)
Q Consensus 246 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~----~~d~~~~itr~~fe~~~~~~~~~~~~ 321 (647)
|+.++|..+++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+.. +.++.+.|||++|+++|.|+++++..
T Consensus 233 ~l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~ 312 (653)
T PRK13411 233 WLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATIE 312 (653)
T ss_pred HHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHH
Confidence 99999999888888889999999999999999999999998888876643 25788999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHHHHHHHcCCCCccccceEEEe
Q 006381 322 PVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLD 401 (647)
Q Consensus 322 ~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~d 401 (647)
+|+++|+++++.+.+|+.|+||||+||+|+|++.|++.|++.++..++||++|||+|||++|+.+++. .+++.+.|
T Consensus 313 ~i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~----~~~~~~~d 388 (653)
T PRK13411 313 PMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE----VKDLLLLD 388 (653)
T ss_pred HHHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCC----ccceeeee
Confidence 99999999999999999999999999999999999999976788889999999999999999999853 67899999
Q ss_pred eecccceEEeeCCEEEEEEeCCCCCCCcceEEeeeccCCCCcEEEEEeecccccccCCccceeEEecCCCCCCCCCCeeE
Q 006381 402 VTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQIT 481 (647)
Q Consensus 402 ~~~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~ 481 (647)
++|++||+++.++.+.+|||||++||+++++.|++..|+|+.+.|.+|||++..+.+|..||+|.+.++|+.+.|.++|+
T Consensus 389 v~p~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~ 468 (653)
T PRK13411 389 VTPLSLGIETLGEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIE 468 (653)
T ss_pred cccceeeEEecCCceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcCCCCCCCCCccEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998999
Q ss_pred EEEEEcCCceEEEEEeeccCCcceeEEEecCCCCCCHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHhhccc
Q 006381 482 VCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTVKD 561 (647)
Q Consensus 482 v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ls~~e~~~~~~~~~~~~~~d~~~~~~~~a~n~lE~~i~~~r~~l~~ 561 (647)
|+|++|.||+|+|++.+..+|++..+.+.+. ..||+++++++++++.++..+|+..+++.++||+||+|||.+|+.|++
T Consensus 469 v~f~id~~Gil~v~a~d~~t~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~~ 547 (653)
T PRK13411 469 VSFEIDVNGILKVSAQDQGTGREQSIRITNT-GGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTLKE 547 (653)
T ss_pred EEEEECCCCeEEEEEeeccCCceEeeEEecc-ccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988888764 569999999999999999999999999999999999999999999975
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 006381 562 EKIGSKLAPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQGAGG 622 (647)
Q Consensus 562 ~~~~~~~~~~~~~~i~~~l~~~~~wl~~~~~~~~~~~~~k~~~l~~~~~~i~~r~~e~~~~ 622 (647)
+..++++++++++.+.++++++||+++ +++.++|++++++|++.+.++..++++++|+
T Consensus 548 --~~~~~~~~er~~i~~~l~~~~~wL~~~-~~~~~~~~~~~~el~~~~~~i~~~~y~~~~~ 605 (653)
T PRK13411 548 --NGELISEELKQRAEQKVEQLEAALTDP-NISLEELKQQLEEFQQALLAIGAEVYQQGGS 605 (653)
T ss_pred --hhccCCHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 678999999999999999999999984 4689999999999999999999999886543
No 5
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-106 Score=854.82 Aligned_cols=615 Identities=78% Similarity=1.156 Sum_probs=594.8
Q ss_pred CCCCCCCCEEEEecCccceEEEEEECCeeEEEecCCCCcccceEEEEcCCceEecHHHHHHHhhCcCchHHhhHHhhCCC
Q 006381 1 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPINTVFDAKRLIGRR 80 (647)
Q Consensus 1 M~~~~~~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~ 80 (647)
|.......+||||||||+++++++.++.++++.|++|++.+||+|+|.++++++|..|+.+...+|.++++.+||++|+.
T Consensus 1 ~~~~~~~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv~~~krliGr~ 80 (620)
T KOG0101|consen 1 KLATPESVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTVFDAKRLIGRF 80 (620)
T ss_pred CCCccccceeeEeccCccceeeeEcCCcceeeeccccCccccceeeecccccchhhhhhhhhhcCCcceeeehhhhcCcc
Confidence 34445578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhhcccCCCeEEEecCCCcceEEEEEcCceeEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHH
Q 006381 81 FSDATVQSDTKLWPFKVIAGAGDKPMIVVTYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQ 160 (647)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~~~~~qr~ 160 (647)
++++.++.+.+.|||.+....++.+.+.+.+.++.+.++|+++++++|.+++..|+.+++..+.++|+|||+||++.||+
T Consensus 81 f~d~~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~ 160 (620)
T KOG0101|consen 81 FDDPEVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRA 160 (620)
T ss_pred ccchhhHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHH
Confidence 99999999999999999977778899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHHH
Q 006381 161 ATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD 240 (647)
Q Consensus 161 ~l~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d 240 (647)
++.+|+.+|||+++++++||+|||++|++.+. .....+++|+|+||||||+|++.+.++.+.+.++.++.++||.+||
T Consensus 161 at~~A~~iaGl~vlrii~EPtAaalAygl~k~--~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~ 238 (620)
T KOG0101|consen 161 ATKDAALIAGLNVLRIINEPTAAALAYGLDKK--VLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFD 238 (620)
T ss_pred HHHHHHHhcCCceeeeecchHHHHHHhhcccc--ccceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhh
Confidence 99999999999999999999999999998776 3467889999999999999999999998899999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCcEEEEEccccCCceeEEeecHHHHHHHHHHHHHHHH
Q 006381 241 NRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYSPITRARFEELNMDLFRKCM 320 (647)
Q Consensus 241 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~d~~~~itr~~fe~~~~~~~~~~~ 320 (647)
+.|.+|+..+|+++++.++..+++++++|+.+||.+|+.||....+.+.+++++++.++...|+|.+|++++.+++.++.
T Consensus 239 ~~l~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itrarfe~l~~dlf~~~~ 318 (620)
T KOG0101|consen 239 NKLVNHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRSTL 318 (620)
T ss_pred HHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccccccceeehhhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHHHHHHHcCCCCccccceEEE
Q 006381 321 EPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLL 400 (647)
Q Consensus 321 ~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~ 400 (647)
.++..+|+++.+++.+|+.|+||||++|+|.++..++++|+++++...+||||+||+|||++|+.+++.......++.+.
T Consensus 319 ~~v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~li 398 (620)
T KOG0101|consen 319 EPVEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLI 398 (620)
T ss_pred HHHHHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeee
Confidence 99999999999999999999999999999999999999998889999999999999999999999998776667899999
Q ss_pred eeecccceEEeeCCEEEEEEeCCCCCCCcceEEeeeccCCCCcEEEEEeecccccccCCccceeEEecCCCCCCCCCCee
Q 006381 401 DVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQI 480 (647)
Q Consensus 401 d~~~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i 480 (647)
|+.|+++||++.++.|.++|++++.+|++++++|+++.|+|+.+.|.||+|++.++++|..+|.|.+.||||+|+|++.|
T Consensus 399 d~~pl~~gve~a~~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gippaprgvp~I 478 (620)
T KOG0101|consen 399 DVAPLSLGVETAGGVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQI 478 (620)
T ss_pred ecccccccccccCCcceeeeecccccceeeeeeeeeecCCCCceeEEEEeccccccccccccceeeecCCCccccCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCceEEEEEeeccCCcceeEEEecCCCCCCHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006381 481 TVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTVK 560 (647)
Q Consensus 481 ~v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ls~~e~~~~~~~~~~~~~~d~~~~~~~~a~n~lE~~i~~~r~~l~ 560 (647)
+++|.+|.||+|.|++.++.+|+...++|+++.++||.++|++|....+++..+|...+.+.+++|.||+|+|.++..++
T Consensus 479 evtfdiD~ngiL~Vta~d~stgK~~~i~i~n~~grls~~~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~~f~~~~~~~ 558 (620)
T KOG0101|consen 479 EVTFDIDANGILNVTAVDKSTGKENKITITNDKGRLSKEEIERMVQEAEKYKAEDEKQKDKVAAKNSLESYAFNMKATVE 558 (620)
T ss_pred eEEEecCCCcEEEEeeccccCCccceEEEecccceeehhhhhhhhhhhhhccccCHHHHHHHHHHhhHHHHHHhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred chhhcCCCCHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHhcc
Q 006381 561 DEKIGSKLAPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQG 619 (647)
Q Consensus 561 ~~~~~~~~~~~~~~~i~~~l~~~~~wl~~~~~~~~~~~~~k~~~l~~~~~~i~~r~~e~ 619 (647)
+.. ..++++++.++.+.++++.+||+.+..+.+++|+.|.++|+..+.||..+++.+
T Consensus 559 ~~~--~~i~~~~~~~~~~~~~~~i~wl~~~~~~~~~e~e~k~~el~~~~~p~~~~~~~~ 615 (620)
T KOG0101|consen 559 DEK--GKINEEDKQKILDKCNEVINWLDKNQLAEKEEFEHKQKELELVCNPIISKLYQG 615 (620)
T ss_pred hhc--cccChhhhhhHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhccHHHHhhhcc
Confidence 753 889999999999999999999999988889999999999999999999999984
No 6
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=1.1e-103 Score=883.94 Aligned_cols=598 Identities=50% Similarity=0.789 Sum_probs=555.6
Q ss_pred CCEEEEecCccceEEEEEECCeeEEEecCCCCcccceEEEEcC-CceEecHHHHHHHhhCcCchHHhhHHhhCCCCCChh
Q 006381 7 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTD-SERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDAT 85 (647)
Q Consensus 7 ~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~-~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~ 85 (647)
..+||||||||||+||++++|.+.+++|..|++.+||+|+|.+ +++++|..|+.+...+|.++++.+|||||+++.+
T Consensus 39 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d-- 116 (673)
T PLN03184 39 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE-- 116 (673)
T ss_pred CCEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch--
Confidence 5699999999999999999999999999999999999999974 5899999999999999999999999999999876
Q ss_pred hhhcccCCCeEEEecCCCcceEEEEEcCceeEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHH
Q 006381 86 VQSDTKLWPFKVIAGAGDKPMIVVTYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKDA 165 (647)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~~~~~qr~~l~~A 165 (647)
++...+.+||.++...++...+.+... ...++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++|
T Consensus 117 ~~~~~~~~~~~v~~~~~~~v~~~~~~~--~~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 194 (673)
T PLN03184 117 VDEESKQVSYRVVRDENGNVKLDCPAI--GKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDA 194 (673)
T ss_pred hhhhhhcCCeEEEecCCCcEEEEEecC--CeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 445667789999876666655554333 357999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHHHHHHHH
Q 006381 166 GVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVN 245 (647)
Q Consensus 166 a~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~ 245 (647)
|++|||+++++++||+|||++|++... .+.++||||+||||||+|++++.++.++++++.|+.++||.+||..|++
T Consensus 195 a~~AGl~v~~li~EPtAAAlayg~~~~----~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~ 270 (673)
T PLN03184 195 GRIAGLEVLRIINEPTAASLAYGFEKK----SNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVD 270 (673)
T ss_pred HHHCCCCeEEEeCcHHHHHHHhhcccC----CCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHH
Confidence 999999999999999999999987654 3678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCcEEEEEccccC----CceeEEeecHHHHHHHHHHHHHHHHH
Q 006381 246 HFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYE----GIDFYSPITRARFEELNMDLFRKCME 321 (647)
Q Consensus 246 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~----~~d~~~~itr~~fe~~~~~~~~~~~~ 321 (647)
|+.++|..+++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+.. +.+++..|||++|+++|.++++++..
T Consensus 271 ~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~~ 350 (673)
T PLN03184 271 WLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCKT 350 (673)
T ss_pred HHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHHH
Confidence 99999999998888889999999999999999999999988888876542 25788999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHHHHHHHcCCCCccccceEEEe
Q 006381 322 PVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLD 401 (647)
Q Consensus 322 ~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~d 401 (647)
+|+++|+++++++.+|+.|+||||+||+|+|++.|++.| +.++...+||+++||+|||++|+++++. .+++.+.|
T Consensus 351 ~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~~----~~~~~~~d 425 (673)
T PLN03184 351 PVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLT-GKDPNVTVNPDEVVALGAAVQAGVLAGE----VSDIVLLD 425 (673)
T ss_pred HHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHh-CCCcccccCcchHHHHHHHHHHHHhccC----ccceEEEe
Confidence 999999999999999999999999999999999999999 5677888999999999999999999863 56789999
Q ss_pred eecccceEEeeCCEEEEEEeCCCCCCCcceEEeeeccCCCCcEEEEEeecccccccCCccceeEEecCCCCCCCCCCeeE
Q 006381 402 VTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQIT 481 (647)
Q Consensus 402 ~~~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~ 481 (647)
++|++||+++.++.+.+|||+|++||+++++.|++..|+|+.+.|.+|||++....+|..||+|.|.++|+.+.|.++|+
T Consensus 426 v~p~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~i~~~~~g~~~i~ 505 (673)
T PLN03184 426 VTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIE 505 (673)
T ss_pred cccccceEEecCCeeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCceEEEEEEeCCCCCCCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999998999
Q ss_pred EEEEEcCCceEEEEEeeccCCcceeEEEecCCCCCCHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHhhccc
Q 006381 482 VCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTVKD 561 (647)
Q Consensus 482 v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ls~~e~~~~~~~~~~~~~~d~~~~~~~~a~n~lE~~i~~~r~~l~~ 561 (647)
|+|.+|.||+|+|++.+..++++..++++. ..+||+++++++++++.++..+|+..+++.++||+||+|||.+|++|.+
T Consensus 506 v~f~id~~GiL~V~a~~~~t~~~~~~~i~~-~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakN~lE~~iy~~r~~l~e 584 (673)
T PLN03184 506 VKFDIDANGILSVSATDKGTGKKQDITITG-ASTLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLKE 584 (673)
T ss_pred EEEEeCCCCeEEEEEEecCCCeEEEEEecc-cccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999999999999999999999998875 4569999999999999999999999999999999999999999999963
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 006381 562 EKIGSKLAPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQGAGGD 623 (647)
Q Consensus 562 ~~~~~~~~~~~~~~i~~~l~~~~~wl~~~~~~~~~~~~~k~~~l~~~~~~i~~r~~e~~~~~ 623 (647)
+..++++++++++.+.++++++||+.+ +.+++++++++|.+.+.++..+++.++||+
T Consensus 585 --~~~~~~~eer~~l~~~l~~~e~wL~~~---d~~~ik~~~~~l~~~l~~l~~~~~~~~~~~ 641 (673)
T PLN03184 585 --LGDKVPADVKEKVEAKLKELKDAIASG---STQKMKDAMAALNQEVMQIGQSLYNQPGAG 641 (673)
T ss_pred --HhhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 888999999999999999999999976 778999999999999999999998866553
No 7
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1e-103 Score=881.01 Aligned_cols=598 Identities=47% Similarity=0.748 Sum_probs=555.4
Q ss_pred CCEEEEecCccceEEEEEECCeeEEEecCCCCcccceEEEEcC-CceEecHHHHHHHhhCcCchHHhhHHhhCCCCCChh
Q 006381 7 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTD-SERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDAT 85 (647)
Q Consensus 7 ~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~-~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~ 85 (647)
..+||||||||||+||++++|.+.++.|..|.+.+||+|+|.+ +++++|..|+.+...+|.++++++||+||+++.+
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~-- 79 (668)
T PRK13410 2 GRIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE-- 79 (668)
T ss_pred CcEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh--
Confidence 4699999999999999999999999999999999999999974 6899999999999999999999999999999865
Q ss_pred hhhcccCCCeEEEecCCCcceEEEEEcCceeEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHH
Q 006381 86 VQSDTKLWPFKVIAGAGDKPMIVVTYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKDA 165 (647)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~~~~~qr~~l~~A 165 (647)
++.....+||.+..+.++...+.+. .....++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++|
T Consensus 80 ~~~~~~~~~~~v~~~~~g~~~i~~~--~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 157 (668)
T PRK13410 80 LDPESKRVPYTIRRNEQGNVRIKCP--RLEREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDA 157 (668)
T ss_pred hHHhhccCCeEEEECCCCcEEEEEe--cCCeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHH
Confidence 4455678899998777666555543 33468999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHHHHHHHH
Q 006381 166 GVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVN 245 (647)
Q Consensus 166 a~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~ 245 (647)
|++|||+++++++||+|||++|++... .+.++||||+||||||+|++++.++.++++++.|+..+||.+||.+|++
T Consensus 158 a~~AGl~v~~li~EPtAAAlayg~~~~----~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~ 233 (668)
T PRK13410 158 GRIAGLEVERILNEPTAAALAYGLDRS----SSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVD 233 (668)
T ss_pred HHHcCCCeEEEecchHHHHHHhccccC----CCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHH
Confidence 999999999999999999999988654 3678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCcEEEEEccccCC----ceeEEeecHHHHHHHHHHHHHHHHH
Q 006381 246 HFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEG----IDFYSPITRARFEELNMDLFRKCME 321 (647)
Q Consensus 246 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~----~d~~~~itr~~fe~~~~~~~~~~~~ 321 (647)
|+.++|..+++.++..+++++.+|+.+||++|+.||.+..+.+.++.+..+ .++...|||++|+++|.++++++..
T Consensus 234 ~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~~ 313 (668)
T PRK13410 234 WLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRLLR 313 (668)
T ss_pred HHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHHH
Confidence 999999999988888899999999999999999999999988888876543 4788899999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHHHHHHHcCCCCccccceEEEe
Q 006381 322 PVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLD 401 (647)
Q Consensus 322 ~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~d 401 (647)
+|+++|+++++++.+|+.|+||||+||||+|++.|++.| +.++...+||++|||+|||++|+++++. .+++.+.|
T Consensus 314 ~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~~----~~~~~l~D 388 (668)
T PRK13410 314 PVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLI-PREPNQNVNPDEVVAVGAAIQAGILAGE----LKDLLLLD 388 (668)
T ss_pred HHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHc-CCCcccCCCCchHHHHhHHHHHHhhccc----ccceeEEe
Confidence 999999999999999999999999999999999999999 5778889999999999999999999863 56899999
Q ss_pred eecccceEEeeCCEEEEEEeCCCCCCCcceEEeeeccCCCCcEEEEEeecccccccCCccceeEEecCCCCCCCCCCeeE
Q 006381 402 VTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQIT 481 (647)
Q Consensus 402 ~~~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~ 481 (647)
++|+++|+++.++.+.+|||+|++||++++.+|++..|+|+.+.|.+|||++....+|..||+|.|.|+|+.+.|.++|+
T Consensus 389 v~p~slgie~~~g~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~I~ 468 (668)
T PRK13410 389 VTPLSLGLETIGGVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQ 468 (668)
T ss_pred eccccccceecCCeeEEEEeCCCcccccccccceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCCCCCCCCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCceEEEEEeeccCCcceeEEEecCCCCCCHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHhhccc
Q 006381 482 VCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTVKD 561 (647)
Q Consensus 482 v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ls~~e~~~~~~~~~~~~~~d~~~~~~~~a~n~lE~~i~~~r~~l~~ 561 (647)
|+|++|.||+|+|++.+..||++..++|... .+||.++++++++++.++..+|+..+++.++||+||+|||.+|++|.+
T Consensus 469 v~f~id~nGiL~V~a~d~~tg~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~d~~~~~~~e~kn~~e~~i~~~~~~l~~ 547 (668)
T PRK13410 469 VAFDIDANGILQVSATDRTTGREQSVTIQGA-STLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRALTLIAQAERRLRD 547 (668)
T ss_pred EEEEECCCcEEEEEEEEcCCCceeeeeeccc-ccCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988888754 569999999999999999999999999999999999999999999964
Q ss_pred --hhhcCCCCHHHHHHHHHHHHHHHHHHhcCC-ccCHHHHHHHHHHHHHHHHHHHHHHhc
Q 006381 562 --EKIGSKLAPADKKKIEDAIDQAIQWLDSNQ-LAEADEFEDKMKELESICNPIIAKMYQ 618 (647)
Q Consensus 562 --~~~~~~~~~~~~~~i~~~l~~~~~wl~~~~-~~~~~~~~~k~~~l~~~~~~i~~r~~e 618 (647)
..+..++++++++++...++++++||+++. ....+.|++++++|+.+..++..|+.|
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~l~~~~~wL~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 607 (668)
T PRK13410 548 AALEFGPYFAERQRRAVESAMRDVQDSLEQDDDRELDLAVADLQEALYGLNREVRAEYKE 607 (668)
T ss_pred hhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 248899999999999999999999999873 356678888889999999999999998
No 8
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=1.1e-103 Score=883.86 Aligned_cols=596 Identities=53% Similarity=0.844 Sum_probs=559.1
Q ss_pred CCCEEEEecCccceEEEEEECCeeEEEecCCCCcccceEEEEcC-CceEecHHHHHHHhhCcCchHHhhHHhhCCCCCCh
Q 006381 6 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTD-SERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDA 84 (647)
Q Consensus 6 ~~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~-~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~ 84 (647)
+..+||||||||||+||++++|.+++++|..|+|.+||+|+|.+ +++++|..|+.+...+|.++++.+||+||++++++
T Consensus 40 ~~~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 119 (663)
T PTZ00400 40 TGDIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDED 119 (663)
T ss_pred cCcEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcH
Confidence 45799999999999999999999999999999999999999975 58999999999999999999999999999999999
Q ss_pred hhhhcccCCCeEEEecCCCcceEEEEEcCceeEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHH
Q 006381 85 TVQSDTKLWPFKVIAGAGDKPMIVVTYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKD 164 (647)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~~~~~qr~~l~~ 164 (647)
.++...+.+||.++...++...+.+ . ...++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++
T Consensus 120 ~~~~~~~~~p~~~~~~~~~~~~~~~--~--~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~ 195 (663)
T PTZ00400 120 ATKKEQKILPYKIVRASNGDAWIEA--Q--GKKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKD 195 (663)
T ss_pred HHHhhhccCCeEEEecCCCceEEEE--C--CEEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHH
Confidence 9999899999999877666655544 3 35899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHHHHHHH
Q 006381 165 AGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMV 244 (647)
Q Consensus 165 Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~ 244 (647)
||++|||+++++++||+|||++|++... .+.++||||+||||||+|++++.++.++++++.|+..+||.+||..|+
T Consensus 196 Aa~~AGl~v~~li~EptAAAlay~~~~~----~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~ 271 (663)
T PTZ00400 196 AGKIAGLDVLRIINEPTAAALAFGMDKN----DGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRIL 271 (663)
T ss_pred HHHHcCCceEEEeCchHHHHHHhccccC----CCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHH
Confidence 9999999999999999999999987653 467999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCcEEEEEccccCC----ceeEEeecHHHHHHHHHHHHHHHH
Q 006381 245 NHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEG----IDFYSPITRARFEELNMDLFRKCM 320 (647)
Q Consensus 245 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~----~d~~~~itr~~fe~~~~~~~~~~~ 320 (647)
+|+.++|.++++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+..+ .++.+.|||++|+++|.|+++++.
T Consensus 272 ~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~ 351 (663)
T PTZ00400 272 NYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTI 351 (663)
T ss_pred HHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHH
Confidence 9999999999888888899999999999999999999999888888766543 478999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHHHHHHHcCCCCccccceEEE
Q 006381 321 EPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLL 400 (647)
Q Consensus 321 ~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~ 400 (647)
.+|+++|+++++++.+|+.|+||||+||+|+|++.|++.| +.++...+||+++||+|||++|+++++. .+++.+.
T Consensus 352 ~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-~~~~~~~~npdeaVA~GAAi~aa~l~~~----~~~~~~~ 426 (663)
T PTZ00400 352 EPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIF-GKEPSKGVNPDEAVAMGAAIQAGVLKGE----IKDLLLL 426 (663)
T ss_pred HHHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHh-CCCcccCCCCccceeeccHHHHHhhcCC----ccceEEE
Confidence 9999999999999999999999999999999999999999 5677889999999999999999999863 5678999
Q ss_pred eeecccceEEeeCCEEEEEEeCCCCCCCcceEEeeeccCCCCcEEEEEeecccccccCCccceeEEecCCCCCCCCCCee
Q 006381 401 DVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQI 480 (647)
Q Consensus 401 d~~~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i 480 (647)
|++|++||+++.++.+.+|||+|+++|.++++.|++..|+|+.+.|.+|+|++..+.+|..||+|.|.++|+.+.|.++|
T Consensus 427 dv~p~slgi~~~~g~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i 506 (663)
T PTZ00400 427 DVTPLSLGIETLGGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQI 506 (663)
T ss_pred eccccceEEEecCCeeEEEEecCccCCccceeeeeeccCCCceEEEEEEEecCccCCcCceeEEEEEcCCCCCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999899
Q ss_pred EEEEEEcCCceEEEEEeeccCCcceeEEEecCCCCCCHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006381 481 TVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTVK 560 (647)
Q Consensus 481 ~v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ls~~e~~~~~~~~~~~~~~d~~~~~~~~a~n~lE~~i~~~r~~l~ 560 (647)
+|+|.+|.||+|+|++.+..+|++..++++.. .+||+++++++++++.++..+|+..+++.++||+||+|||.+|+.|.
T Consensus 507 ~v~f~id~~Gil~v~a~~~~~~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~ 585 (663)
T PTZ00400 507 EVTFDVDANGIMNISAVDKSTGKKQEITIQSS-GGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLS 585 (663)
T ss_pred EEEEEECCCCCEEEEEEeccCCcEEEEEeecc-ccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988988764 56999999999999999999999999999999999999999999997
Q ss_pred chhhcCCCCHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHhccc
Q 006381 561 DEKIGSKLAPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQGA 620 (647)
Q Consensus 561 ~~~~~~~~~~~~~~~i~~~l~~~~~wl~~~~~~~~~~~~~k~~~l~~~~~~i~~r~~e~~ 620 (647)
+ +...+++++++++.+.++++++||+++ +.++|++++++|++.++++..++++++
T Consensus 586 e--~~~~~s~~ere~i~~~l~~~~~WL~~~---d~~~i~~k~~eL~~~l~~l~~k~y~~~ 640 (663)
T PTZ00400 586 D--LKDKISDADKDELKQKITKLRSTLSSE---DVDSIKDKTKQLQEASWKISQQAYKQG 640 (663)
T ss_pred H--HhhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4 888999999999999999999999986 789999999999999999999987744
No 9
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=2.2e-102 Score=874.99 Aligned_cols=593 Identities=54% Similarity=0.854 Sum_probs=555.6
Q ss_pred CCEEEEecCccceEEEEEECCeeEEEecCCCCcccceEEEEc-CCceEecHHHHHHHhhCcCchHHhhHHhhCCCCCChh
Q 006381 7 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFT-DSERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDAT 85 (647)
Q Consensus 7 ~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~-~~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~ 85 (647)
+.+||||||||||+||++++|.+++++|..|++.+||+|+|. ++++++|..|+.+...+|.++++++|||||++ ++.
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~~ 79 (627)
T PRK00290 2 GKIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DEE 79 (627)
T ss_pred CcEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--chH
Confidence 369999999999999999999999999999999999999997 67899999999999999999999999999998 566
Q ss_pred hhhcccCCCeEEEecCCCcceEEEEEcCceeEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHH
Q 006381 86 VQSDTKLWPFKVIAGAGDKPMIVVTYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKDA 165 (647)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~~~~~qr~~l~~A 165 (647)
++...+.+||.++...++...+. ..+ ..++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++|
T Consensus 80 ~~~~~~~~p~~~~~~~~~~~~~~--~~~--~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~A 155 (627)
T PRK00290 80 VQKDIKLVPYKIVKADNGDAWVE--IDG--KKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDA 155 (627)
T ss_pred HHHHhhcCCeEEEEcCCCceEEE--ECC--EEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHH
Confidence 78888899999997766555543 333 57999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHHHHHHHH
Q 006381 166 GVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVN 245 (647)
Q Consensus 166 a~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~ 245 (647)
|++|||++++|++||+|||++|++... .+.++||||+||||||+|++++.++.++++++.|+..+||.+||.+|++
T Consensus 156 a~~AGl~v~~li~EptAAAl~y~~~~~----~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~ 231 (627)
T PRK00290 156 GKIAGLEVLRIINEPTAAALAYGLDKK----GDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIID 231 (627)
T ss_pred HHHcCCceEEEecchHHHHHHhhhccC----CCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHHH
Confidence 999999999999999999999987653 4688999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCcEEEEEccccCC----ceeEEeecHHHHHHHHHHHHHHHHH
Q 006381 246 HFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEG----IDFYSPITRARFEELNMDLFRKCME 321 (647)
Q Consensus 246 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~----~d~~~~itr~~fe~~~~~~~~~~~~ 321 (647)
|+.++|..+++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+..+ .++.+.|||++|+++|.|+++++..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~~~ 311 (627)
T PRK00290 232 YLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVERTIE 311 (627)
T ss_pred HHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHHHH
Confidence 999999999988888899999999999999999999999998888876542 6788999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHHHHHHHcCCCCccccceEEEe
Q 006381 322 PVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLD 401 (647)
Q Consensus 322 ~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~d 401 (647)
+|+++|+++++++.+|+.|+||||+||+|+|++.|++.| +.++..++||++|||+|||++|+.+++. .+++.+.|
T Consensus 312 ~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f-g~~~~~~~npdeava~GAa~~aa~l~~~----~~~~~~~d 386 (627)
T PRK00290 312 PCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFF-GKEPNKGVNPDEVVAIGAAIQGGVLAGD----VKDVLLLD 386 (627)
T ss_pred HHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHh-CCCCCcCcCChHHHHHhHHHHHHHhcCC----ccceeeee
Confidence 999999999999999999999999999999999999999 6778889999999999999999999863 57899999
Q ss_pred eecccceEEeeCCEEEEEEeCCCCCCCcceEEeeeccCCCCcEEEEEeecccccccCCccceeEEecCCCCCCCCCCeeE
Q 006381 402 VTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQIT 481 (647)
Q Consensus 402 ~~~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~ 481 (647)
++|++||++..++.+.+|||+|+++|++++++|++..|+|+.+.|.+|+|++....+|..||+|.|.++|+.++|.++|+
T Consensus 387 ~~~~slgi~~~~~~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~ 466 (627)
T PRK00290 387 VTPLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIE 466 (627)
T ss_pred ccceEEEEEecCCeEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEecccccCcCceEEEEEECCCCCCCCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999988999
Q ss_pred EEEEEcCCceEEEEEeeccCCcceeEEEecCCCCCCHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHhhccc
Q 006381 482 VCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTVKD 561 (647)
Q Consensus 482 v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ls~~e~~~~~~~~~~~~~~d~~~~~~~~a~n~lE~~i~~~r~~l~~ 561 (647)
|+|.+|.||+|+|++.+..+++..++++... .+||+++++++++++.++..+|+..+++.+++|+||+|+|.+|+.|++
T Consensus 467 v~f~~d~~gil~v~a~~~~~~~~~~~~i~~~-~~ls~e~i~~~~~~~~~~~~~d~~~~~~~eakN~le~~i~~~~~~l~~ 545 (627)
T PRK00290 467 VTFDIDANGIVHVSAKDKGTGKEQSITITAS-SGLSDEEIERMVKDAEANAEEDKKRKELVEARNQADSLIYQTEKTLKE 545 (627)
T ss_pred EEEEECCCceEEEEEEEccCCceeEEEeccc-cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988764 569999999999999999999999999999999999999999999973
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHhccc
Q 006381 562 EKIGSKLAPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQGA 620 (647)
Q Consensus 562 ~~~~~~~~~~~~~~i~~~l~~~~~wl~~~~~~~~~~~~~k~~~l~~~~~~i~~r~~e~~ 620 (647)
+..++++++++++.+.++++++||+++ +.++|++++++|+++++++..|+++++
T Consensus 546 --~~~~~~~~e~~~i~~~l~~~~~wL~~~---~~~~i~~k~~~L~~~~~~~~~~~~~~~ 599 (627)
T PRK00290 546 --LGDKVPADEKEKIEAAIKELKEALKGE---DKEAIKAKTEELTQASQKLGEAMYQQA 599 (627)
T ss_pred --HhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 778999999999999999999999977 789999999999999999999998743
No 10
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=7.4e-100 Score=851.60 Aligned_cols=593 Identities=52% Similarity=0.816 Sum_probs=551.3
Q ss_pred CCEEEEecCccceEEEEEECCeeEEEecCCCCcccceEEEEcC-CceEecHHHHHHHhhCcCchHHhhHHhhCCCCCChh
Q 006381 7 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTD-SERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDAT 85 (647)
Q Consensus 7 ~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~-~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~ 85 (647)
+.+||||||||||+||++++|.+.+++|..|.+.+||+|+|.+ +++++|..|+.+...+|.++++++||+||+.+++
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~-- 79 (621)
T CHL00094 2 GKVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE-- 79 (621)
T ss_pred CceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH--
Confidence 3699999999999999999999999999999999999999975 5799999999999999999999999999998865
Q ss_pred hhhcccCCCeEEEecCCCcceEEEEEcCceeEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHH
Q 006381 86 VQSDTKLWPFKVIAGAGDKPMIVVTYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKDA 165 (647)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~~~~~qr~~l~~A 165 (647)
+....+.+||.+....++...+.+.. ....++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++|
T Consensus 80 ~~~~~~~~~~~v~~~~~g~i~~~~~~--~~~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~A 157 (621)
T CHL00094 80 ISEEAKQVSYKVKTDSNGNIKIECPA--LNKDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDA 157 (621)
T ss_pred HHhhhhcCCeEEEECCCCCEEEEEec--CCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 45566779999987666655554433 3357999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHHHHHHHH
Q 006381 166 GVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVN 245 (647)
Q Consensus 166 a~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~ 245 (647)
|++|||+++++++||+|||++|+.... .+.++||||+||||||+|++++.++.++++++.++..+||++||..|++
T Consensus 158 a~~AGl~v~~li~EptAAAlay~~~~~----~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~ 233 (621)
T CHL00094 158 GKIAGLEVLRIINEPTAASLAYGLDKK----NNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVN 233 (621)
T ss_pred HHHcCCceEEEeccHHHHHHHhccccC----CCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHH
Confidence 999999999999999999999987653 3578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCcEEEEEccccC----CceeEEeecHHHHHHHHHHHHHHHHH
Q 006381 246 HFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYE----GIDFYSPITRARFEELNMDLFRKCME 321 (647)
Q Consensus 246 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~----~~d~~~~itr~~fe~~~~~~~~~~~~ 321 (647)
|+.++|.++++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+.. +.++...|||++||+++.++++++..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~ 313 (621)
T CHL00094 234 WLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRI 313 (621)
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHH
Confidence 99999999999888889999999999999999999999988888876643 25788899999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHHHHHHHcCCCCccccceEEEe
Q 006381 322 PVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLD 401 (647)
Q Consensus 322 ~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~d 401 (647)
+|+++|+++++++.+|+.|+||||+||+|.|++.|++.| +.++...+||+++||+|||++|+.+++. .+++.+.|
T Consensus 314 ~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-g~~~~~~~~pdeava~GAA~~aa~ls~~----~~~~~~~d 388 (621)
T CHL00094 314 PVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLL-GKKPNQSVNPDEVVAIGAAVQAGVLAGE----VKDILLLD 388 (621)
T ss_pred HHHHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHh-CCCcCcCCCchhHHHhhhHHHHHHhcCC----ccceeeee
Confidence 999999999999999999999999999999999999999 5678889999999999999999999863 56789999
Q ss_pred eecccceEEeeCCEEEEEEeCCCCCCCcceEEeeeccCCCCcEEEEEeecccccccCCccceeEEecCCCCCCCCCCeeE
Q 006381 402 VTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQIT 481 (647)
Q Consensus 402 ~~~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~ 481 (647)
++|++||++..++.+.+|||+|+++|++++..|++..|+|..+.|.+|||++..+.+|..||+|.|.++|+.++|.++|+
T Consensus 389 ~~~~~lgi~~~~~~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~~~~~~~g~~~i~ 468 (621)
T CHL00094 389 VTPLSLGVETLGGVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIE 468 (621)
T ss_pred eeceeeeeeccCCEEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEEEeCCCCCCCCCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred EEEEEcCCceEEEEEeeccCCcceeEEEecCCCCCCHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHhhccc
Q 006381 482 VCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTVKD 561 (647)
Q Consensus 482 v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ls~~e~~~~~~~~~~~~~~d~~~~~~~~a~n~lE~~i~~~r~~l~~ 561 (647)
|+|++|.||+|+|++.+..+++...+.+.+ ..+|++++++++++++.++..+|+..+++.+++|+||+|||.+|++|++
T Consensus 469 v~f~id~~Gil~v~~~~~~t~~~~~~~i~~-~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~le~~i~~~~~~l~~ 547 (621)
T CHL00094 469 VTFDIDANGILSVTAKDKGTGKEQSITIQG-ASTLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQLKE 547 (621)
T ss_pred EEEEECCCCeEEEEEeeccCCceeeeeecc-chhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999988888875 4569999999999999999999999999999999999999999999974
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHhc
Q 006381 562 EKIGSKLAPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 618 (647)
Q Consensus 562 ~~~~~~~~~~~~~~i~~~l~~~~~wl~~~~~~~~~~~~~k~~~l~~~~~~i~~r~~e 618 (647)
+..++++++++++.+.++++++||+++ +.+++++++++|++.++++..++++
T Consensus 548 --~~~~~~~~~~~~~~~~l~~~~~wl~~~---~~~~~~~~~~~l~~~~~~~~~kl~~ 599 (621)
T CHL00094 548 --LKDKISEEKKEKIENLIKKLRQALQND---NYESIKSLLEELQKALMEIGKEVYS 599 (621)
T ss_pred --HhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888999999999999999999999987 6689999999999999999999877
No 11
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=1.1e-99 Score=850.97 Aligned_cols=589 Identities=54% Similarity=0.852 Sum_probs=547.6
Q ss_pred CEEEEecCccceEEEEEECCeeEEEecCCCCcccceEEEEcCC-ceEecHHHHHHHhhCcCchHHhhHHhhCCCCCChhh
Q 006381 8 PAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDS-ERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDATV 86 (647)
Q Consensus 8 ~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~-~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~~ 86 (647)
.+||||||||||+||++++|.+.+++|..|++.+||+|+|.++ ++++|..|+.+...+|.++++++||+||++++ .+
T Consensus 1 ~viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~--~~ 78 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFD--EV 78 (595)
T ss_pred CEEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCch--HH
Confidence 3899999999999999999999999999999999999999855 89999999999999999999999999999883 36
Q ss_pred hhcccCCCeEEEecCCCcceEEEEEcCceeEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHH
Q 006381 87 QSDTKLWPFKVIAGAGDKPMIVVTYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKDAG 166 (647)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~~~~~qr~~l~~Aa 166 (647)
+...+.+||.+ ...++...+.+ . ...++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++||
T Consensus 79 ~~~~~~~~~~v-~~~~~~~~~~v--~--~~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa 153 (595)
T TIGR02350 79 TEEAKRVPYKV-VGDGGDVRVKV--D--GKEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAG 153 (595)
T ss_pred HHHhhcCCeeE-EcCCCceEEEE--C--CEEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 66778899994 34555544444 3 3679999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHHHHHHHHH
Q 006381 167 VIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNH 246 (647)
Q Consensus 167 ~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~ 246 (647)
++|||+++++++||+|||++|++.... .+.++||||+||||||+|++++.++.++++++.|+..+||.+||..|++|
T Consensus 154 ~~AGl~v~~li~EptAAAl~y~~~~~~---~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~ 230 (595)
T TIGR02350 154 KIAGLEVLRIINEPTAAALAYGLDKSK---KDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDW 230 (595)
T ss_pred HHcCCceEEEecchHHHHHHHhhcccC---CCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHHH
Confidence 999999999999999999999876532 47899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCcEEEEEccccC----CceeEEeecHHHHHHHHHHHHHHHHHH
Q 006381 247 FVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYE----GIDFYSPITRARFEELNMDLFRKCMEP 322 (647)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~----~~d~~~~itr~~fe~~~~~~~~~~~~~ 322 (647)
+.++|.++++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+.. +.++.+.|||++|++++.|+++++..+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~ 310 (595)
T TIGR02350 231 LADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEP 310 (595)
T ss_pred HHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHH
Confidence 9999999998888889999999999999999999999999888876643 257889999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHHHHHHHcCCCCccccceEEEee
Q 006381 323 VEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDV 402 (647)
Q Consensus 323 i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~d~ 402 (647)
|+++|+++++++.+|+.|+||||+||+|+|++.|++.|+ .++...+||+++||+|||++|+.+++. .+++.+.|+
T Consensus 311 i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~-~~~~~~~~pdeava~GAa~~aa~l~~~----~~~~~~~d~ 385 (595)
T TIGR02350 311 VRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFG-KEPNKSVNPDEVVAIGAAIQGGVLKGD----VKDVLLLDV 385 (595)
T ss_pred HHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhC-CcccCCcCcHHHHHHHHHHHHHHhcCC----cccceeeec
Confidence 999999999999999999999999999999999999995 678889999999999999999999864 577899999
Q ss_pred ecccceEEeeCCEEEEEEeCCCCCCCcceEEeeeccCCCCcEEEEEeecccccccCCccceeEEecCCCCCCCCCCeeEE
Q 006381 403 TPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 482 (647)
Q Consensus 403 ~~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v 482 (647)
+|++||++..++.+.+|||+|+++|++++++|++..|+|..+.|.+|+|++..+.+|..||+|.+.++++.++|.++|++
T Consensus 386 ~~~~igi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v 465 (595)
T TIGR02350 386 TPLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEV 465 (595)
T ss_pred ccceeEEEecCCceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEeecccccccCcEeEEEEECCCCCCCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999998899999999999999999999889999
Q ss_pred EEEEcCCceEEEEEeeccCCcceeEEEecCCCCCCHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHhhccch
Q 006381 483 CFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTVKDE 562 (647)
Q Consensus 483 ~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ls~~e~~~~~~~~~~~~~~d~~~~~~~~a~n~lE~~i~~~r~~l~~~ 562 (647)
+|++|.||+|+|++.+..++++.+++++.. .+||+++++++++++.++..+|+..+++.+++|+||+|||.+|+.|++
T Consensus 466 ~f~~d~~G~l~v~~~~~~~~~~~~~~i~~~-~~ls~~~~~~~~~~~~~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l~~- 543 (595)
T TIGR02350 466 TFDIDANGILHVSAKDKGTGKEQSITITAS-SGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLKE- 543 (595)
T ss_pred EEEEcCCCeEEEEEEEccCCceEEEEeccc-cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 999999999999999999999988888764 569999999999999999999999999999999999999999999974
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHh
Q 006381 563 KIGSKLAPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 617 (647)
Q Consensus 563 ~~~~~~~~~~~~~i~~~l~~~~~wl~~~~~~~~~~~~~k~~~l~~~~~~i~~r~~ 617 (647)
+..++++++++++.+.++++++||+++ +.++|++++++|++.++++..+++
T Consensus 544 -~~~~~~~~e~~~l~~~l~~~~~wL~~~---d~~~i~~~~~~l~~~~~~~~~~~~ 594 (595)
T TIGR02350 544 -AGDKLPAEEKEKIEKAVAELKEALKGE---DVEEIKAKTEELQQALQKLAEAMY 594 (595)
T ss_pred -hhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578899999999999999999999987 788999999999999999998764
No 12
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=2.3e-98 Score=834.03 Aligned_cols=584 Identities=39% Similarity=0.633 Sum_probs=538.5
Q ss_pred EEEEecCccceEEEEEECCeeEEEecCCCCcccceEEEEcCC-ceEecHHHHHHHhhCcCchHHhhHHhhCCCCCChhhh
Q 006381 9 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDS-ERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDATVQ 87 (647)
Q Consensus 9 vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~-~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~~~ 87 (647)
+||||||||||+||++++|.+++++|..|.+.+||+|+|.++ ++++|..|+.+...+|.++++.+|||+|+.+.+...
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~~- 79 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIKT- 79 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchhh-
Confidence 589999999999999999999999999999999999999765 899999999999999999999999999999876432
Q ss_pred hcccCCCeEEEecCCCcceEEEEEcCceeEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHH
Q 006381 88 SDTKLWPFKVIAGAGDKPMIVVTYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKDAGV 167 (647)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~~~~~qr~~l~~Aa~ 167 (647)
.+.+||.+....++...+.+. + ..++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++||+
T Consensus 80 --~~~~~~~~~~~~~~~~~~~~~--~--~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~ 153 (599)
T TIGR01991 80 --FSILPYRFVDGPGEMVRLRTV--Q--GTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAAR 153 (599)
T ss_pred --cccCCEEEEEcCCCceEEEeC--C--CEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 567899988666665555443 2 2689999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHHHHHHHHHH
Q 006381 168 IAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHF 247 (647)
Q Consensus 168 ~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l 247 (647)
+|||+++++++||+|||++|++... .+.++||||+||||||+|++++.++.++++++.++..+||.+||..|++++
T Consensus 154 ~AGl~v~~li~EPtAAAlay~~~~~----~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l 229 (599)
T TIGR01991 154 LAGLNVLRLLNEPTAAAVAYGLDKA----SEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWI 229 (599)
T ss_pred HcCCCceEEecCHHHHHHHHhhccC----CCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999987654 367899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCcEEEEEccccCCceeEEeecHHHHHHHHHHHHHHHHHHHHHHH
Q 006381 248 VQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYSPITRARFEELNMDLFRKCMEPVEKCL 327 (647)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~d~~~~itr~~fe~~~~~~~~~~~~~i~~~l 327 (647)
.+++ +.+...+++.+.+|+.+||++|+.||.+..+.+.++. ++.++.++|||++|++++.|+++++..+|+++|
T Consensus 230 ~~~~----~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~g~~~~~~itr~efe~l~~~ll~~i~~~i~~~L 303 (599)
T TIGR01991 230 LKQL----GISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--DGKDFKGKLTRDEFEALIQPLVQKTLSICRRAL 303 (599)
T ss_pred HHhh----CCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--CCcEEEEEEeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8654 4455678899999999999999999999988888764 678999999999999999999999999999999
Q ss_pred HHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHHHHHHHcCCCCccccceEEEeeecccc
Q 006381 328 RDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSL 407 (647)
Q Consensus 328 ~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~d~~~~~~ 407 (647)
+++++.+.+|+.|+||||+||+|+|++.|++.| +..+..++||++|||+|||++|+.+++. +..+++.+.|++|++|
T Consensus 304 ~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f-~~~~~~~~npdeaVA~GAai~a~~l~~~--~~~~~~~l~dv~p~sl 380 (599)
T TIGR01991 304 RDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELF-GQEPLTDIDPDQVVALGAAIQADLLAGN--RIGNDLLLLDVTPLSL 380 (599)
T ss_pred HHcCCChhhCCEEEEECCcCCChHHHHHHHHHh-CCCCCCCCCCcHHHHHHHHHHHHHhccc--cccCceEEEEeeeeee
Confidence 999999999999999999999999999999999 4667788999999999999999999853 3456789999999999
Q ss_pred eEEeeCCEEEEEEeCCCCCCCcceEEeeeccCCCCcEEEEEeecccccccCCccceeEEecCCCCCCCCCCeeEEEEEEc
Q 006381 408 GLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDID 487 (647)
Q Consensus 408 gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~~~~d 487 (647)
|+++.++.+.++||||++||++++..|++..|+|+.+.|.+|||++..+.+|..||+|.|.++|+.+.|.++|+|+|++|
T Consensus 381 gi~~~~g~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id 460 (599)
T TIGR01991 381 GIETMGGLVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVD 460 (599)
T ss_pred EEEecCCEEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCCCCCCcEEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEeeccCCcceeEEEecCCCCCCHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHhhccchhhcCC
Q 006381 488 ANGILNVSAEDKTTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSK 567 (647)
Q Consensus 488 ~~g~l~v~~~~~~~~~~~~~~~~~~~~~ls~~e~~~~~~~~~~~~~~d~~~~~~~~a~n~lE~~i~~~r~~l~~~~~~~~ 567 (647)
.||+|+|++.++.+|++..+.+.+. ..|++++++++.+++.++..+|...++..+++|++|+|+|.+++.+.+ +...
T Consensus 461 ~~gil~V~a~~~~t~~~~~~~i~~~-~~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 537 (599)
T TIGR01991 461 ADGLLTVSAQEQSTGVEQSIQVKPS-YGLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAERILEALQAALAA--DGDL 537 (599)
T ss_pred CCCeEEEEEEECCCCcEEEEecccc-cCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcc
Confidence 9999999999999999999888764 459999999999999999999999999999999999999999999964 4567
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHhc
Q 006381 568 LAPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 618 (647)
Q Consensus 568 ~~~~~~~~i~~~l~~~~~wl~~~~~~~~~~~~~k~~~l~~~~~~i~~r~~e 618 (647)
+++++++++...++++++||+++ +.++++++.++|++.++++..+..+
T Consensus 538 ~~~~~~~~~~~~l~~~~~~l~~~---~~~~~~~~~~~l~~~~~~~~~~~~~ 585 (599)
T TIGR01991 538 LSEDERAAIDAAMEALQKALQGD---DADAIKAAIEALEEATDNFAARRMD 585 (599)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999976 7789999999999999999986655
No 13
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=3.3e-97 Score=826.21 Aligned_cols=583 Identities=38% Similarity=0.625 Sum_probs=534.9
Q ss_pred CCEEEEecCccceEEEEEECCeeEEEecCCCCcccceEEEEcCCceEecHHHHHHHhhCcCchHHhhHHhhCCCCCChhh
Q 006381 7 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDATV 86 (647)
Q Consensus 7 ~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~~ 86 (647)
..+||||||||||+||++.+|.+++++|..|++.+||+|+|.+++++||..|+.+...+|.++++.+||+||+.+.+.
T Consensus 19 ~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~-- 96 (616)
T PRK05183 19 RLAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSLADI-- 96 (616)
T ss_pred CeEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCCCEEEcHHHHHhhHhCchhhHHHHHHHhCCCchhh--
Confidence 468999999999999999999999999999999999999999888999999999999999999999999999988763
Q ss_pred hhcccCCCeEEEecCCCcceEEEEEcCceeEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHH
Q 006381 87 QSDTKLWPFKVIAGAGDKPMIVVTYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKDAG 166 (647)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~~~~~qr~~l~~Aa 166 (647)
+.....+||.+....++...+.+. + ..++|+++++++|++|++.|+.+++..+.++|||||++|++.||+++++||
T Consensus 97 ~~~~~~~~~~~~~~~~g~~~~~~~--~--~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 172 (616)
T PRK05183 97 QQRYPHLPYQFVASENGMPLIRTA--Q--GLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAA 172 (616)
T ss_pred hhhhhcCCeEEEecCCCceEEEec--C--CeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHH
Confidence 444567899887666666555442 2 268999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHHHHHHHHH
Q 006381 167 VIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNH 246 (647)
Q Consensus 167 ~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~ 246 (647)
++|||+++++++||+|||++|++... .+.++||||+||||||+|++++.++.++++++.|+.++||.+||..|++|
T Consensus 173 ~~AGl~v~~li~EPtAAAlay~~~~~----~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~ 248 (616)
T PRK05183 173 RLAGLNVLRLLNEPTAAAIAYGLDSG----QEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADW 248 (616)
T ss_pred HHcCCCeEEEecchHHHHHHhhcccC----CCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHH
Confidence 99999999999999999999987653 36789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCcEEEEEccccCCceeEEeecHHHHHHHHHHHHHHHHHHHHHH
Q 006381 247 FVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYSPITRARFEELNMDLFRKCMEPVEKC 326 (647)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~d~~~~itr~~fe~~~~~~~~~~~~~i~~~ 326 (647)
+.++|. .+...+++.+.+|+.+||++|+.||.+..+.+.+..+ ...|||++|++++.|+++++..+++++
T Consensus 249 ~~~~~~----~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~------~~~itr~efe~l~~~l~~~~~~~i~~~ 318 (616)
T PRK05183 249 ILEQAG----LSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALW------QGEITREQFNALIAPLVKRTLLACRRA 318 (616)
T ss_pred HHHHcC----CCcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecC------CCeEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 988764 3344678999999999999999999999888877432 234999999999999999999999999
Q ss_pred HHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHHHHHHHcCCCCccccceEEEeeeccc
Q 006381 327 LRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLS 406 (647)
Q Consensus 327 l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~d~~~~~ 406 (647)
|+++++++.+|+.|+||||+||+|+|++.|++.| +..+....||+++||+|||++|+.+++. +...++.+.|++|++
T Consensus 319 L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-g~~~~~~~npdeaVA~GAAi~a~~l~~~--~~~~~~~l~dv~p~s 395 (616)
T PRK05183 319 LRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFF-GRTPLTSIDPDKVVAIGAAIQADILAGN--KPDSDMLLLDVIPLS 395 (616)
T ss_pred HHHcCCCcccCCEEEEECCcccChHHHHHHHHHh-ccCcCcCCCchHHHHHHHHHHHHHhccc--cccCceEEEeecccc
Confidence 9999999999999999999999999999999999 4566678999999999999999999864 335678999999999
Q ss_pred ceEEeeCCEEEEEEeCCCCCCCcceEEeeeccCCCCcEEEEEeecccccccCCccceeEEecCCCCCCCCCCeeEEEEEE
Q 006381 407 LGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDI 486 (647)
Q Consensus 407 ~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~~~~ 486 (647)
||+++.++.+.+|||||+++|+++++.|++..|+|+.+.|.+|||++..+.+|..||+|.|.|+|+.+.|.++|+|+|++
T Consensus 396 lgi~~~~g~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~~ 475 (616)
T PRK05183 396 LGLETMGGLVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTFQV 475 (616)
T ss_pred ccceecCCeEEEEEeCCCcccccccEEEEeccCCCeEEEEEEecccccccccccEEEEEEeCCCCCCCCCCccEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEEeeccCCcceeEEEecCCCCCCHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHhhccchhhcC
Q 006381 487 DANGILNVSAEDKTTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGS 566 (647)
Q Consensus 487 d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ls~~e~~~~~~~~~~~~~~d~~~~~~~~a~n~lE~~i~~~r~~l~~~~~~~ 566 (647)
|.||+|+|++.++.+|++.++++.+.. .||+++++++.+++.++..+|+..+++.+++|++|+|+|.+++.+.+ ...
T Consensus 476 d~~Gil~V~a~~~~~~~~~~~~i~~~~-~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~ 552 (616)
T PRK05183 476 DADGLLSVTAMEKSTGVEASIQVKPSY-GLTDDEIARMLKDSMSHAEEDMQARALAEQKVEAERVLEALQAALAA--DGD 552 (616)
T ss_pred CCCCeEEEEEEEcCCCcEEEecccccc-cCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--hhc
Confidence 999999999999999999999887654 59999999999999999999999999999999999999999999965 336
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHhc
Q 006381 567 KLAPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 618 (647)
Q Consensus 567 ~~~~~~~~~i~~~l~~~~~wl~~~~~~~~~~~~~k~~~l~~~~~~i~~r~~e 618 (647)
.+++++++++...++++++||..+ +.+++++++++|++.++++..+..+
T Consensus 553 ~~~~~~~~~~~~~l~~~~~~l~~~---d~~~~~~~~~~l~~~~~~~~~~~~~ 601 (616)
T PRK05183 553 LLSAAERAAIDAAMAALREVAQGD---DADAIEAAIKALDKATQEFAARRMD 601 (616)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 789999999999999999999866 8899999999999999999986655
No 14
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-98 Score=759.81 Aligned_cols=601 Identities=53% Similarity=0.832 Sum_probs=568.4
Q ss_pred CCCEEEEecCccceEEEEEECCeeEEEecCCCCcccceEEEEc-CCceEecHHHHHHHhhCcCchHHhhHHhhCCCCCCh
Q 006381 6 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFT-DSERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDA 84 (647)
Q Consensus 6 ~~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~-~~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~ 84 (647)
...++|||+|||||+++++.++.+.++.|..|.|.+||+|+|. +.++++|..|+.+...||.|+++.-||+||++|.++
T Consensus 26 ~~~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~d~ 105 (640)
T KOG0102|consen 26 KGKVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFDDP 105 (640)
T ss_pred CCceeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhccCH
Confidence 3569999999999999999999999999999999999999995 458999999999999999999999999999999999
Q ss_pred hhhhcccCCCeEEEecCCCcceEEEEEcCceeEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHH
Q 006381 85 TVQSDTKLWPFKVIAGAGDKPMIVVTYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKD 164 (647)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~~~~~qr~~l~~ 164 (647)
+++.+.+..||+++...++...+.. ....++|.++.+++|.++++.|+.+++..+..+|+||||||++.||+++++
T Consensus 106 evq~~~k~vpyKiVk~~ngdaw~e~----~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkd 181 (640)
T KOG0102|consen 106 EVQKDIKQVPYKIVKASNGDAWVEA----RGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKD 181 (640)
T ss_pred HHHHHHHhCCcceEEccCCcEEEEe----CCeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhHh
Confidence 9999999999999988888877766 357899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHHHHHHH
Q 006381 165 AGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMV 244 (647)
Q Consensus 165 Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~ 244 (647)
|.++||++++++++||+|||++|+++... +..++|||+||||||++++++.++.|++.++.+|.++||++||..++
T Consensus 182 ag~iagl~vlrvineptaaalaygld~k~----~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~~ 257 (640)
T KOG0102|consen 182 AGQIAGLNVLRVINEPTAAALAYGLDKKE----DGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALV 257 (640)
T ss_pred hhhhccceeeccCCccchhHHhhcccccC----CCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHHH
Confidence 99999999999999999999999998764 67899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCcEEEEEccccCC----ceeEEeecHHHHHHHHHHHHHHHH
Q 006381 245 NHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEG----IDFYSPITRARFEELNMDLFRKCM 320 (647)
Q Consensus 245 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~----~d~~~~itr~~fe~~~~~~~~~~~ 320 (647)
+++...|++..++++..+.+++.||..++|++|+.||....+.+.++.+..+ ..+++++||.+||+++.+++++.+
T Consensus 258 ~~~v~~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti 337 (640)
T KOG0102|consen 258 RFIVSEFKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTI 337 (640)
T ss_pred HHHHHhhhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhh
Confidence 9999999999999999999999999999999999999999999998877654 678999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHHHHHHHcCCCCccccceEEE
Q 006381 321 EPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLL 400 (647)
Q Consensus 321 ~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~ 400 (647)
++++++|++|++...+|+.|+||||.+|+|.+++.+++.| +.......|||++||.|||+++..++++ ++++.+.
T Consensus 338 ~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~f-gk~p~~~vnPdeava~GAaiqggvl~ge----VkdvlLL 412 (640)
T KOG0102|consen 338 EPCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELF-GKGPSKGVNPDEAVAGGAAIQGGVLSGE----VKDVLLL 412 (640)
T ss_pred hHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHh-CCCCCCCcCCcchhccchhhccchhhcc----ccceeee
Confidence 9999999999999999999999999999999999999999 6788899999999999999999999976 8899999
Q ss_pred eeecccceEEeeCCEEEEEEeCCCCCCCcceEEeeeccCCCCcEEEEEeecccccccCCccceeEEecCCCCCCCCCCee
Q 006381 401 DVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQI 480 (647)
Q Consensus 401 d~~~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i 480 (647)
|++|+++||++.++.|..+++||+.||+.++..|+++.|+|+.+.|.+|||++....+|+.+|+|.+.|+||.|+|.|+|
T Consensus 413 dVtpLsLgietlggvft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gipp~pRgvpqi 492 (640)
T KOG0102|consen 413 DVTPLSLGIETLGGVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGVPQI 492 (640)
T ss_pred ecchHHHHHHhhhhhheecccCCcccCchhhhheeecccCCceEEEEeeechhhhhccCcccceeeecccCCCCCCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCceEEEEEeeccCCcceeEEEecCCCCCCHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006381 481 TVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTVK 560 (647)
Q Consensus 481 ~v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ls~~e~~~~~~~~~~~~~~d~~~~~~~~a~n~lE~~i~~~r~~l~ 560 (647)
.|+|++|.||+++|+|.++.+||.+++++....+ ||++|++.+..+.+.+...|+.++++.+..|..+++++.....+.
T Consensus 493 eVtfDIdanGI~~vsA~dk~t~K~qsi~i~~sgg-Ls~~ei~~mV~eaer~~~~d~~~~~~ie~~nka~s~~~~te~~~~ 571 (640)
T KOG0102|consen 493 EVTFDIDANGIGTVSAKDKGTGKSQSITIASSGG-LSKDEIELMVGEAERLASTDKEKREAIETKNKADSIIYDTEKSLK 571 (640)
T ss_pred eEEEeecCCceeeeehhhcccCCccceEEeecCC-CCHHHHHHHHHHHHHHHhhhHHHHHHhhhhcchhheecCchhhhh
Confidence 9999999999999999999999999999998655 999999999999999999999999999999999999999999986
Q ss_pred chhhcCCCCHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 006381 561 DEKIGSKLAPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQGAGG 622 (647)
Q Consensus 561 ~~~~~~~~~~~~~~~i~~~l~~~~~wl~~~~~~~~~~~~~k~~~l~~~~~~i~~r~~e~~~~ 622 (647)
. +.+.++.++..+|+..+....+.+..-...+.+++..+...|++..-|+...++.+++.
T Consensus 572 ~--~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~k~~~~~l~q~~lkl~es~~k~~~~ 631 (640)
T KOG0102|consen 572 E--FEEKIPAEECEKLEEKISDLRELVANKDSGDMEEIKKAMSALQQASLKLFESAYKNMGA 631 (640)
T ss_pred h--hhhhCcHHHHHHHHHHHHHHHHHHhhhccCChhhHHHHHHHHHHhhhHHHHHHHhhhcc
Confidence 5 77788888888999999999998875322345899999999999999999888876633
No 15
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=3.1e-95 Score=823.61 Aligned_cols=598 Identities=47% Similarity=0.823 Sum_probs=550.7
Q ss_pred EEEEecCccceEEEEEECCeeEEEecCCCCcccceEEEEcCCceEecHHHHHHHhhCcCchHHhhHHhhCCCCCChhhhh
Q 006381 9 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDATVQS 88 (647)
Q Consensus 9 vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~~~~ 88 (647)
|||||||||||+||++++|.++++.|..|+|++||+|+|.+++++||..|.....++|.++++++|+|||+.++++.++.
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~~ 80 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQK 80 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHHH
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEeeecccCCcchhhhcccccccccccccccccccccccccch
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCeEEEecCCCcceEEEEEcCceeEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHH
Q 006381 89 DTKLWPFKVIAGAGDKPMIVVTYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKDAGVI 168 (647)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~~~~~qr~~l~~Aa~~ 168 (647)
..+.+||.+..+.++...+.+.+.+....++|+++++++|++|++.++.+++..+.++|||||++|++.||+++++||+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~~ 160 (602)
T PF00012_consen 81 EKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAEL 160 (602)
T ss_dssp HHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHHH
T ss_pred hhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhcccccccc
Confidence 99999999998888899999988888889999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHHHHHHHHHHH
Q 006381 169 AGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFV 248 (647)
Q Consensus 169 AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~ 248 (647)
|||++++|++||+|||++|++.... .++++||||+||||+|+|++++.++.++++++.++..+||.+||.+|++++.
T Consensus 161 agl~~~~li~Ep~Aaa~~y~~~~~~---~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~ 237 (602)
T PF00012_consen 161 AGLNVLRLINEPTAAALAYGLERSD---KGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYLL 237 (602)
T ss_dssp TT-EEEEEEEHHHHHHHHTTTTSSS---SEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHH
T ss_pred cccccceeecccccccccccccccc---cccceeccccccceEeeeehhcccccccccccccccccccceecceeecccc
Confidence 9999999999999999999877664 6889999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHHHHcCC--CCcEEEEEccccC-CceeEEeecHHHHHHHHHHHHHHHHHHHHH
Q 006381 249 QEFKRKHKKDISGNPRALRRLRTSCERAKRTLSS--TAQTTIEIDSLYE-GIDFYSPITRARFEELNMDLFRKCMEPVEK 325 (647)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~--~~~~~~~i~~~~~-~~d~~~~itr~~fe~~~~~~~~~~~~~i~~ 325 (647)
++|..+++.++..+++.+.+|+.+||++|+.||. +....+.++.+.+ +.++.+.|||++|++++.|+++++..+|++
T Consensus 238 ~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~ 317 (602)
T PF00012_consen 238 EKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEFEELCEPLLERIIEPIEK 317 (602)
T ss_dssp HHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHHHHHTHHHHHHTHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeccccccccccccccccc
Confidence 9999998888888999999999999999999999 6677778887777 889999999999999999999999999999
Q ss_pred HHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHHHHHHHcCCCCccccceEEEeeecc
Q 006381 326 CLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPL 405 (647)
Q Consensus 326 ~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~d~~~~ 405 (647)
+|++++++..+|+.|+||||+||+|+|++.|++.|+ ..+..++||++|||+|||++|+.+++. ++.+++.+.|++|+
T Consensus 318 ~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~-~~~~~~~~p~~aVA~GAa~~a~~~~~~--~~~~~~~~~d~~~~ 394 (602)
T PF00012_consen 318 ALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFG-KKISKSVNPDEAVARGAALYAAILSGS--FRVKDIKIIDVTPF 394 (602)
T ss_dssp HHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTT-SEEB-SS-TTTHHHHHHHHHHHHHHTS--CSSTSSCESEBESS
T ss_pred ccccccccccccceeEEecCcccchhhhhhhhhccc-cccccccccccccccccccchhhhccc--cccccccccccccc
Confidence 999999999999999999999999999999999995 778889999999999999999999853 55778899999999
Q ss_pred cceEEeeCCEEEEEEeCCCCCCCcceEEeeeccCCCCcEEEEEeecccccccCCccceeEEecCCCCCCCCCCeeEEEEE
Q 006381 406 SLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFD 485 (647)
Q Consensus 406 ~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~~~ 485 (647)
+||++..++.+..++++|+++|...+..|.+..++|..+.|.+|+|+.....+|..||+|.+.++++.+.|.++|+++|+
T Consensus 395 ~~~i~~~~~~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~f~ 474 (602)
T PF00012_consen 395 SIGIEVSNGKFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSSFEDNKKIGSYTISGIPPAPKGKPKIKVTFE 474 (602)
T ss_dssp EEEEEETTTEEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEES-SSSSTTSSEEEEEEE
T ss_pred cccccccccccccccccccccccccccccchhccccccccceeeeccccccccccccccccccccccccccccceeeEEe
Confidence 99999999999999999999999999999999999999999999999988889999999999999999999999999999
Q ss_pred EcCCceEEEEEeeccCCcceeEEEecCCCCCCHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHhhccchhhc
Q 006381 486 IDANGILNVSAEDKTTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTVKDEKIG 565 (647)
Q Consensus 486 ~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ls~~e~~~~~~~~~~~~~~d~~~~~~~~a~n~lE~~i~~~r~~l~~~~~~ 565 (647)
+|.+|+|+|++.+..++....+++..... ++++++++++++++++...|+..+++.+++|+||+++|++|+.+++. .
T Consensus 475 ld~~Gil~V~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~e~kn~lE~~i~~~r~~l~~~--~ 551 (602)
T PF00012_consen 475 LDENGILSVEAAEVETGKEEEVTVKKKET-LSKEEIEELKKKLEEMDEEDEERRERAEAKNELESYIYELRDKLEED--K 551 (602)
T ss_dssp EETTSEEEEEEEETTTTEEEEEEEESSSS-SCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--G
T ss_pred eeeeeehhhhhcccccccccccccccccc-cccccccccccccchhhhhhhhhhhccccHHHHHHHHHHHHHHHHhh--h
Confidence 99999999999999998888888887665 99999999999999999999999999999999999999999999874 5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhcCC-ccCHHHHHHHHHHHHHHHHHHHHHHhc
Q 006381 566 SKLAPADKKKIEDAIDQAIQWLDSNQ-LAEADEFEDKMKELESICNPIIAKMYQ 618 (647)
Q Consensus 566 ~~~~~~~~~~i~~~l~~~~~wl~~~~-~~~~~~~~~k~~~l~~~~~~i~~r~~e 618 (647)
..++++++ .+.+++..+||+++. +++.++|++|+++|+++.+||..|+++
T Consensus 552 ~~~~~~~~---~~~l~~~~~wl~~~~~~~~~~e~~~kl~~L~~~~~~i~~r~~~ 602 (602)
T PF00012_consen 552 DFVSEEEK---KKKLKETSDWLEDNGEDADKEEYKEKLEELKKVIEPIKKRYMQ 602 (602)
T ss_dssp GGSTHHHH---HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ccCCHHHH---HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 67777766 788999999999884 578999999999999999999999874
No 16
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=3.8e-93 Score=786.02 Aligned_cols=554 Identities=33% Similarity=0.521 Sum_probs=484.7
Q ss_pred CCEEEEecCccceEEEEEECCeeEEEecCCCCcccceEEEEcCCceEecHHHHHHHhhCcCchHHhhHHhhCCCCCChhh
Q 006381 7 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDATV 86 (647)
Q Consensus 7 ~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~~ 86 (647)
..+||||||||||+||++.+|.+++++|..|++.+||+|+|.++++++|..| +++++||++|+++++...
T Consensus 19 ~~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A----------ti~~~KrliG~~~~~~~~ 88 (595)
T PRK01433 19 QIAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNNFTIGNNK----------GLRSIKRLFGKTLKEILN 88 (595)
T ss_pred ceEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcCCCEEECchh----------hHHHHHHHhCCCchhhcc
Confidence 3599999999999999999999999999999999999999998889999987 789999999999865321
Q ss_pred hhcccCCCeEEEecCCCcceEEEEEcCceeEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHH
Q 006381 87 QSDTKLWPFKVIAGAGDKPMIVVTYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKDAG 166 (647)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~~~~~qr~~l~~Aa 166 (647)
.............. ....+.+... ...++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++||
T Consensus 89 ~~~~~~~~k~~~~~--~~~~~~~~~~--~~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~~Aa 164 (595)
T PRK01433 89 TPALFSLVKDYLDV--NSSELKLNFA--NKQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAA 164 (595)
T ss_pred chhhHhhhhheeec--CCCeeEEEEC--CEEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHH
Confidence 11100000011111 1222333333 3579999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHHHHHHHHH
Q 006381 167 VIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNH 246 (647)
Q Consensus 167 ~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~ 246 (647)
++|||+++++++||+|||++|++... ...++||||+||||||+|++++.++.++++++.|+.++||++||.+|++|
T Consensus 165 ~~AGl~v~~li~EPtAAAlay~~~~~----~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~~ 240 (595)
T PRK01433 165 KIAGFEVLRLIAEPTAAAYAYGLNKN----QKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQY 240 (595)
T ss_pred HHcCCCEEEEecCcHHHHHHHhcccC----CCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHHH
Confidence 99999999999999999999987653 35689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCcEEEEEccccCCceeEEeecHHHHHHHHHHHHHHHHHHHHHH
Q 006381 247 FVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYSPITRARFEELNMDLFRKCMEPVEKC 326 (647)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~d~~~~itr~~fe~~~~~~~~~~~~~i~~~ 326 (647)
+..+|... .+.+ .+..||++|+.||.+..... ..++|||++|+++|.|+++++..+++++
T Consensus 241 ~~~~~~~~------~~~~----~~~~~ekaK~~LS~~~~~~~----------~~~~itr~efe~l~~~l~~~~~~~i~~~ 300 (595)
T PRK01433 241 LCNKFDLP------NSID----TLQLAKKAKETLTYKDSFNN----------DNISINKQTLEQLILPLVERTINIAQEC 300 (595)
T ss_pred HHHhcCCC------CCHH----HHHHHHHHHHhcCCCccccc----------ceEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99876421 2222 23459999999998765321 1678999999999999999999999999
Q ss_pred HHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHHHHHHHcCCCCccccceEEEeeeccc
Q 006381 327 LRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLS 406 (647)
Q Consensus 327 l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~d~~~~~ 406 (647)
|++++ ..+|+.|+||||+||+|+|++.|++.| +.++..+.||+++||+|||++|+.+++. ..++.+.|++|++
T Consensus 301 L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f-~~~~~~~~npdeaVA~GAAi~a~~l~~~----~~~~~l~Dv~p~s 373 (595)
T PRK01433 301 LEQAG--NPNIDGVILVGGATRIPLIKDELYKAF-KVDILSDIDPDKAVVWGAALQAENLIAP----HTNSLLIDVVPLS 373 (595)
T ss_pred HhhcC--cccCcEEEEECCcccChhHHHHHHHHh-CCCceecCCchHHHHHHHHHHHHHhhCC----ccceEEEEecccc
Confidence 99998 568999999999999999999999999 5677788999999999999999998753 3568899999999
Q ss_pred ceEEeeCCEEEEEEeCCCCCCCcceEEeeeccCCCCcEEEEEeecccccccCCccceeEEecCCCCCCCCCCeeEEEEEE
Q 006381 407 LGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDI 486 (647)
Q Consensus 407 ~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~~~~ 486 (647)
+|+++.+|.+.+|||||++||+++++.|++..|+|+.+.|.+|||++..+.+|..||+|.|.|+|+.++|.++|+|+|++
T Consensus 374 lgi~~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~vtf~i 453 (595)
T PRK01433 374 LGMELYGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAI 453 (595)
T ss_pred eEEEecCCEEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEeccccccCCCcEEEEEEEcCCCCCCCCCccEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEEeeccCCcceeEEEecCCCCCCHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHhhccchhhcC
Q 006381 487 DANGILNVSAEDKTTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGS 566 (647)
Q Consensus 487 d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ls~~e~~~~~~~~~~~~~~d~~~~~~~~a~n~lE~~i~~~r~~l~~~~~~~ 566 (647)
|.||+|+|++.+..||++.++.|..+. .||++|+++++++++++..+|...+++.+++|++|++++.+++.+++ +..
T Consensus 454 d~~Gil~V~a~~~~t~~~~~~~i~~~~-~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 530 (595)
T PRK01433 454 DADGILSVSAYEKISNTSHAIEVKPNH-GIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEALIFNIERAIAE--LTT 530 (595)
T ss_pred CCCCcEEEEEEEcCCCcEEEEEecCCC-CCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhc
Confidence 999999999999999999999997654 49999999999999999999999999999999999999999999965 556
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHH
Q 006381 567 KLAPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNP 611 (647)
Q Consensus 567 ~~~~~~~~~i~~~l~~~~~wl~~~~~~~~~~~~~k~~~l~~~~~~ 611 (647)
.+++++++.+...+++.++||+.+ +...+++++++|++.+.+
T Consensus 531 ~l~~~~~~~i~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~ 572 (595)
T PRK01433 531 LLSESEISIINSLLDNIKEAVHAR---DIILINNSIKEFKSKIKK 572 (595)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999865 555555555555555555
No 17
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-91 Score=766.40 Aligned_cols=573 Identities=55% Similarity=0.837 Sum_probs=539.0
Q ss_pred CCCEEEEecCccceEEEEEECC-eeEEEecCCCCcccceEEEEcCC-ceEecHHHHHHHhhCcCchHHhhHHhhCCCCCC
Q 006381 6 EGPAIGIDLGTTYSCVGVWQHD-RVEIIANDQGNRTTPSYVAFTDS-ERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSD 83 (647)
Q Consensus 6 ~~~vvGID~GTt~s~va~~~~g-~~~ii~~~~g~~~~Ps~v~~~~~-~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~ 83 (647)
...+||||||||||+||+++++ .+.++.|..|.|.+||+|+|..+ ++++|..|+.+...+|.++++.+||++|+.-.
T Consensus 4 ~~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~- 82 (579)
T COG0443 4 AKKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSN- 82 (579)
T ss_pred CceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCC-
Confidence 4579999999999999999988 79999999999999999999876 59999999999999999999999999998611
Q ss_pred hhhhhcccCCCeEEEecCCCcceEEEEEcCceeEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHH
Q 006381 84 ATVQSDTKLWPFKVIAGAGDKPMIVVTYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATK 163 (647)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~~~~~qr~~l~ 163 (647)
...+.+...+ +.++|+++++++|++|++.|+.+++..++++|||||+||++.||++++
T Consensus 83 --------------------~~~~~~~~~~--~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~ 140 (579)
T COG0443 83 --------------------GLKISVEVDG--KKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATK 140 (579)
T ss_pred --------------------CCcceeeeCC--eeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHH
Confidence 0001122222 579999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHHHHHH
Q 006381 164 DAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRM 243 (647)
Q Consensus 164 ~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l 243 (647)
+|+++|||+++++++||+|||++|+++.. .+..|+|||+||||||+|++++..+.++++++.++.++||++||.+|
T Consensus 141 ~A~~iaGl~vlrlinEPtAAAlayg~~~~----~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l 216 (579)
T COG0443 141 DAARIAGLNVLRLINEPTAAALAYGLDKG----KEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNAL 216 (579)
T ss_pred HHHHHcCCCeEEEecchHHHHHHhHhccC----CCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHH
Confidence 99999999999999999999999998876 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCcEEEEEccccCCceeEEeecHHHHHHHHHHHHHHHHHHH
Q 006381 244 VNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYSPITRARFEELNMDLFRKCMEPV 323 (647)
Q Consensus 244 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~d~~~~itr~~fe~~~~~~~~~~~~~i 323 (647)
.+|+.++|..+++.++..+++.+.+|+.+||++|+.||....+.+.++++..+.++...|||++||+++.+++.++..++
T Consensus 217 ~~~~~~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~E~l~~dll~r~~~~~ 296 (579)
T COG0443 217 IDYLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERTIEPV 296 (579)
T ss_pred HHHHHHHhhccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887777788899999999999999999999999
Q ss_pred HHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHHHHHHHcCCCCccccceEEEeee
Q 006381 324 EKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVT 403 (647)
Q Consensus 324 ~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~d~~ 403 (647)
..+|.+++++..+|+.|+||||++|||.|++.+++.|+ .++...+||+++||.|||++|..+++. .+++.+.|+.
T Consensus 297 ~~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~-~~~~~~inpdeava~GAa~qa~~l~~~----~~d~ll~Dv~ 371 (579)
T COG0443 297 EQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFG-KEPEKSINPDEAVALGAAIQAAVLSGE----VPDVLLLDVI 371 (579)
T ss_pred HHHHHHcCCChhhCceEEEccceeccHHHHHHHHHHhC-ccccccCCccHHHHHHHHHHHHhhcCc----ccCceEEeee
Confidence 99999999999999999999999999999999999995 888899999999999999999999865 2388999999
Q ss_pred cccceEEeeCCEEEEEEeCCCCCCCcceEEeeeccCCCCcEEEEEeecccccccCCccceeEEecCCCCCCCCCCeeEEE
Q 006381 404 PLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVC 483 (647)
Q Consensus 404 ~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~ 483 (647)
|+++|++..++.+..++++|+.+|.++...|++..|+|..+.+.+++|++...++|..+|.|.+.++||.++|.++|+++
T Consensus 372 plslgie~~~~~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~i~v~ 451 (579)
T COG0443 372 PLSLGIETLGGVRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVT 451 (579)
T ss_pred eeccccccCcchhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCCCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCceEEEEEeeccCCcceeEEEecCCCCCCHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHhhccchh
Q 006381 484 FDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTVKDEK 563 (647)
Q Consensus 484 ~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ls~~e~~~~~~~~~~~~~~d~~~~~~~~a~n~lE~~i~~~r~~l~~~~ 563 (647)
|.+|.||+++|++.++.+|+...++|....+ |++++++.+.+.+..+.+.|...++..+.+|..+.+++.++..|.+..
T Consensus 452 f~iD~~gi~~v~a~~~~~~k~~~i~i~~~~~-ls~~~i~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 530 (579)
T COG0443 452 FDIDANGILNVTAKDLGTGKEQSITIKASSG-LSDEEIERMVEDAEANAALDKKFRELVEARNEAESLIYSLEKALKEIV 530 (579)
T ss_pred eccCCCcceEeeeecccCCceEEEEEecCCC-CCHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999888 999999999999999999999999999999999999999999997643
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHhc
Q 006381 564 IGSKLAPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 618 (647)
Q Consensus 564 ~~~~~~~~~~~~i~~~l~~~~~wl~~~~~~~~~~~~~k~~~l~~~~~~i~~r~~e 618 (647)
.+++++++.++..+++++.||+.. .++++.+.++|+....++..++++
T Consensus 531 ---~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~l~~~~~~~~~~~~~ 578 (579)
T COG0443 531 ---KVSEEEKEKIEEAITDLEEALEGE----KEEIKAKIEELQEVTQKLAEKKYQ 578 (579)
T ss_pred ---cCCHHHHHHHHHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 889999999999999999999982 899999999999999999988765
No 18
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-90 Score=724.45 Aligned_cols=594 Identities=36% Similarity=0.585 Sum_probs=549.7
Q ss_pred EEEEecCccceEEEEEECCeeEEEecCCCCcccceEEEEcCCceEecHHHHHHHhhCcCchHHhhHHhhCCCCCChhhhh
Q 006381 9 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDATVQS 88 (647)
Q Consensus 9 vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~~~~ 88 (647)
|+|||||..+|.+|+.+.+.+++|.|+.++|.+|++|+|...+|++|.+|+.+...++.+++..+||++|+.|++|.++.
T Consensus 3 vvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~q~ 82 (727)
T KOG0103|consen 3 VVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEVQR 82 (727)
T ss_pred ceeeeccccceeeeeeccCCceeeeeccccccCcceeeeccccceeeeccccceeecccccchhhhhhhccccCChHhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCeEEEecCCCcceEEEEEcCceeEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHH
Q 006381 89 DTKLWPFKVIAGAGDKPMIVVTYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKDAGVI 168 (647)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~~~~~qr~~l~~Aa~~ 168 (647)
..+.+|+.++...|+...+.+.+.|+.+.|++++|++|+|.+|+..++..+..++.+|||+||+||++.||+++.+||++
T Consensus 83 ~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA~i 162 (727)
T KOG0103|consen 83 EIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAARI 162 (727)
T ss_pred cccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeEecChhHHHHhcccccccccC---CCCeeEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHHHHHHHH
Q 006381 169 AGLNVMRIINEPTAAAIAYGLDKKATS---VGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVN 245 (647)
Q Consensus 169 AGl~~~~li~Ep~Aaa~~y~~~~~~~~---~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~ 245 (647)
|||+++++++|.+|+|++|++.+.+.. .++.+++++|+|.+++.+|++.|..|.++++++.++..+||++||+.|.+
T Consensus 163 agLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L~~ 242 (727)
T KOG0103|consen 163 AGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEALID 242 (727)
T ss_pred cCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHHHH
Confidence 999999999999999999999887643 45788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCcEEEEEccccCCceeEEeecHHHHHHHHHHHHHHHHHHHHH
Q 006381 246 HFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYSPITRARFEELNMDLFRKCMEPVEK 325 (647)
Q Consensus 246 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~d~~~~itr~~fe~~~~~~~~~~~~~i~~ 325 (647)
|+..+|+.+|+++...++++..||+..||+.|+.||++...+++|++++++.|.+..|+|++||++|.|+++++..++.+
T Consensus 243 hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~ReEfEel~~plL~rv~~p~~~ 322 (727)
T KOG0103|consen 243 HFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKREEFEELSAPLLERVEVPLLK 322 (727)
T ss_pred HHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecchhhhhccHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHHHHHHHcCCCCccccceEEEeeecc
Q 006381 326 CLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPL 405 (647)
Q Consensus 326 ~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~d~~~~ 405 (647)
+|++++++..+|+.|.+|||+||+|.|.+.|.++| ++++.+++|.++|||+|||+++|++| +.++++++.++|+.|+
T Consensus 323 ~l~d~~l~~edi~~VEiVGg~sripaike~Is~~F-gke~s~TlN~dEavarG~ALqcAIlS--P~frVRef~v~Di~py 399 (727)
T KOG0103|consen 323 ALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFF-GKELSRTLNQDEAVARGAALQCAILS--PTFRVREFSVEDIVPY 399 (727)
T ss_pred HHHHhcCccccceeEEEecCcccchHHHHHHHHHh-CCcccccccHHHHHHHhHHHHHHhcC--ccccceecceecccce
Confidence 99999999999999999999999999999999999 79999999999999999999999999 7789999999999999
Q ss_pred cceEEee----C-CEEEEEEeCCCCCCCcceEEeeeccCCCCcEEEEEeecc-cccccCCccceeEEecCCCCCCCC-CC
Q 006381 406 SLGLETA----G-GVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGE-RTRTRDNNLLGKFELSGIPPAPRG-VP 478 (647)
Q Consensus 406 ~~gi~~~----~-~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~-~~~~~~~~~lg~~~l~~i~~~~~g-~~ 478 (647)
+|.+.+. + +....+||+|.++|.++..+|.... .+.+.++++. ...+.....|++|.+.++.+...| ..
T Consensus 400 sIs~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~~Rk~----~F~lea~yt~~~~lp~~~~kI~~~~i~~v~~~~~ge~s 475 (727)
T KOG0103|consen 400 SISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLTFNRKG----PFTLEAKYTKVNKLPYPKPKIEKWTITGVTPSEDGEFS 475 (727)
T ss_pred eEEEEeccccccCCCceeeecCCCCCCCceEEEEEecC----ceEEEEEeccccccCCCCCceeeEEecccccCcccccc
Confidence 9988754 2 4557899999999999999988765 3778777776 455555678999999998876663 45
Q ss_pred eeEEEEEEcCCceEEEEEeec--------------c--------------CCc----ceeEEEec-CCCCCCHHHHHHHH
Q 006381 479 QITVCFDIDANGILNVSAEDK--------------T--------------TGQ----KNKITITN-DKGRLSKDEIEKMV 525 (647)
Q Consensus 479 ~i~v~~~~d~~g~l~v~~~~~--------------~--------------~~~----~~~~~~~~-~~~~ls~~e~~~~~ 525 (647)
+++|+..++.+|++.+..+.. . .++ ...+.+.. ..+.|+.++++..+
T Consensus 476 kVKvkvr~n~~Gi~~i~sA~~~e~~~veev~~~~~e~~~~~~~~~~~~~~~~k~kvk~~~L~~~~~~~~~l~~~~l~~~~ 555 (727)
T KOG0103|consen 476 KVKVKVRLNEHGIDTIESATLIEDIEVEEVPEEPMEYDDAAKMLERIAPAENKKKVKKVDLPIEAYTKGALITDELELYI 555 (727)
T ss_pred ceeEEEEEcCccceeeecceeecccchhccccchhhhhcchhhhhhhccccccceeeeccccceeeeccccCHHHHHHHH
Confidence 799999999999999864321 0 010 01122222 23579999999999
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHHHHHHHHhhccchhhcCCCCHHHHHHHHHHHHHHHHHHhcC-CccCHHHHHHHHHH
Q 006381 526 QEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLAPADKKKIEDAIDQAIQWLDSN-QLAEADEFEDKMKE 604 (647)
Q Consensus 526 ~~~~~~~~~d~~~~~~~~a~n~lE~~i~~~r~~l~~~~~~~~~~~~~~~~i~~~l~~~~~wl~~~-~~~~~~~~~~k~~~ 604 (647)
+++.+|..+|+...++.++||.||+|||.+|++|.+ .|..++++++++++..+|+++++|||++ ++.+...|..|+.+
T Consensus 556 e~E~~M~~qD~~~~Et~D~KNaleeyVY~~R~kl~~-~y~~f~~~a~~e~~~~~l~~~E~wlyedGed~~k~~Y~~kl~e 634 (727)
T KOG0103|consen 556 EKENKMILQDKLEKETVDAKNALEEYVYDMRDKLSD-KYEDFITDAEREKLKKMLTDTEEWLYEDGEDQTKAVYVAKLEE 634 (727)
T ss_pred HHHHHhhhhhhhhhhhccHHHHHHHHHHHHHHHhhh-hhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHH
Confidence 999999999999999999999999999999999987 4999999999999999999999999987 56899999999999
Q ss_pred HHHHHH
Q 006381 605 LESICN 610 (647)
Q Consensus 605 l~~~~~ 610 (647)
|+++.+
T Consensus 635 lk~~g~ 640 (727)
T KOG0103|consen 635 LKKLGD 640 (727)
T ss_pred HHhhhh
Confidence 999986
No 19
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-81 Score=652.06 Aligned_cols=601 Identities=30% Similarity=0.506 Sum_probs=528.1
Q ss_pred CCEEEEecCccceEEEEEECC-eeEEEecCCCCcccceEEEEcCCceEecHHHHHHHhhCcCchHHhhHHhhCCCCCChh
Q 006381 7 GPAIGIDLGTTYSCVGVWQHD-RVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDAT 85 (647)
Q Consensus 7 ~~vvGID~GTt~s~va~~~~g-~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~ 85 (647)
..|++|||||.+++|+++++| +.+|+.|..++|++|++|+|.+++|+||.+|.....++|++++..++.|+|+...++.
T Consensus 22 ~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~~~ 101 (902)
T KOG0104|consen 22 LAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDDPT 101 (902)
T ss_pred hhheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCCceehhhhhhhhhhcCcHHHHHHHHHHhCcccCCcH
Confidence 579999999999999999998 6899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCeEEEecCCCcceEEEEEcCceeEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHH
Q 006381 86 VQSDTKLWPFKVIAGAGDKPMIVVTYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKDA 165 (647)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~~~~~qr~~l~~A 165 (647)
+..+.+.+|+--+.....+..+.+.+.+ ...|+++++++|+|.+.++.|+.+...+++++|||||.||++.||+++.+|
T Consensus 102 v~ly~~~~p~~e~v~d~~rstV~F~i~d-~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all~A 180 (902)
T KOG0104|consen 102 VDLYQKRFPFFELVEDPQRSTVVFKISD-QEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALLQA 180 (902)
T ss_pred HHHHHhcCCceeecccCccceEEEEeCC-ccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHHHH
Confidence 9988888886544333357777777766 468999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeEecChhHHHHhccccccc-ccCCCCeeEEEEEeCCCceEEEEEEEe----------CCeEEEEEeeCCCCC
Q 006381 166 GVIAGLNVMRIINEPTAAAIAYGLDKK-ATSVGEKNVLIFDLGGGTFDVSLLTIE----------EGIFEVKATAGDTHL 234 (647)
Q Consensus 166 a~~AGl~~~~li~Ep~Aaa~~y~~~~~-~~~~~~~~vlV~D~GggT~dvsv~~~~----------~~~~~v~~~~~~~~l 234 (647)
|++||++++.||++.+|+|+.|++.+. .....++++||||||+|+|.++++.+. ...+++++.+++..+
T Consensus 181 a~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~tL 260 (902)
T KOG0104|consen 181 AQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDRTL 260 (902)
T ss_pred HHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCCcc
Confidence 999999999999999999999999864 334678999999999999999999874 148999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhhcc--CCCCCCHHHHHHHHHHHHHHHHHcCCCCcEEEEEccccCCceeEEeecHHHHHHHH
Q 006381 235 GGEDFDNRMVNHFVQEFKRKHK--KDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYSPITRARFEELN 312 (647)
Q Consensus 235 GG~~~d~~l~~~l~~~~~~~~~--~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~d~~~~itr~~fe~~~ 312 (647)
||..|..+|.+||.+.|.+.++ .++..+|+++.+|.++|+++|..||.|..+...|++++++.||...|||++||++|
T Consensus 261 GG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~ddiDFr~kvTRe~fEelc 340 (902)
T KOG0104|consen 261 GGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDDIDFRLKVTREEFEELC 340 (902)
T ss_pred chHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhccccccceeHHHHHHHH
Confidence 9999999999999999999876 46788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHHHHHHHcCCCCc
Q 006381 313 MDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNE 392 (647)
Q Consensus 313 ~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~~~~~~~~ 392 (647)
.+++.++..+|.++|..++++.++|+.|+|.||+||+|.||+.|.+..+..++...+|.|||+++||+++|+.|| ..|
T Consensus 341 ~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LS--ksF 418 (902)
T KOG0104|consen 341 ADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLS--KSF 418 (902)
T ss_pred HHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhc--ccc
Confidence 999999999999999999999999999999999999999999999999778999999999999999999999999 568
Q ss_pred cccceEEEeeecccceEEeeCC--------EEEEEEeCCCCCCCcceEEeeeccCCCCcEEEEEeecccccccCCcccee
Q 006381 393 KVQDLLLLDVTPLSLGLETAGG--------VMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGK 464 (647)
Q Consensus 393 ~~~~~~~~d~~~~~~gi~~~~~--------~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~ 464 (647)
+++++.+.|.++|+|-++.... ....+|+++.++|..+..+|+.+.|+ +.+.+-.|.-. ..+-.
T Consensus 419 KvKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysdd---f~~~~n~~~~~-----~nl~~ 490 (902)
T KOG0104|consen 419 KVKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDD---FPFNINYGDLG-----QNLTT 490 (902)
T ss_pred cccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCCc---cccccchhhhc-----cCccE
Confidence 9999999999999987765432 23368999999999998888777664 22222222110 23447
Q ss_pred EEecCCCCCCC-------CCCeeEEEEEEcCCceEEEEEeecc---------------------C---------------
Q 006381 465 FELSGIPPAPR-------GVPQITVCFDIDANGILNVSAEDKT---------------------T--------------- 501 (647)
Q Consensus 465 ~~l~~i~~~~~-------g~~~i~v~~~~d~~g~l~v~~~~~~---------------------~--------------- 501 (647)
|++.|+...-+ ...-|+++|.+|.+|++.|+..+.. +
T Consensus 491 velsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~evv~e~~~~~d~~~~~st~~K~~~~~e~e~~~~~~~~~e~ 570 (902)
T KOG0104|consen 491 VELSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVFEKQKEEDSGDKKSTLSKLGSTSEGEETSDDSVQEED 570 (902)
T ss_pred EEEecchHHHHhcccchhhccCceEEEEEcCcCceEEeeeeEEEeccCCcccchhhhhhhccccccccccccccccchhh
Confidence 78877664221 1235999999999999998654210 0
Q ss_pred --------Cc-ce-------------------------------------eEEEecC---CCCCCHHHHHHHHHHHHhhh
Q 006381 502 --------GQ-KN-------------------------------------KITITND---KGRLSKDEIEKMVQEAEKYK 532 (647)
Q Consensus 502 --------~~-~~-------------------------------------~~~~~~~---~~~ls~~e~~~~~~~~~~~~ 532 (647)
++ +. .+.|+.. ..-|+.+.+.....+++.+.
T Consensus 571 ae~k~~ep~e~se~~ee~~~d~s~e~k~e~~t~e~~~~~~~~~~~~p~~~~~~i~~~~~~~~~l~~~~~~~~~~kl~d~~ 650 (902)
T KOG0104|consen 571 AEEKGLEPSERSELEEEAEEDASQEDKTEKETSEAQKPTEKKETPAPMVVRLQIQETYPDLPVLNENALDAAVAKLEDFV 650 (902)
T ss_pred hhhhccCccccccccccccccccccccccccchhccCcchhhcccCcceeEeeeeeecccccCCchhHHHHHHHHHHHHH
Confidence 00 00 1334332 24689999999999999999
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHhhccchhhcCCCCHHHHHHHHHHHHHHHHHHhcC-CccCHHHHHHHHHHHHHHHHH
Q 006381 533 SEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLAPADKKKIEDAIDQAIQWLDSN-QLAEADEFEDKMKELESICNP 611 (647)
Q Consensus 533 ~~d~~~~~~~~a~n~lE~~i~~~r~~l~~~~~~~~~~~~~~~~i~~~l~~~~~wl~~~-~~~~~~~~~~k~~~l~~~~~~ 611 (647)
.+|+.+.++.+|.|+||.|+|++.++|.+++|..+.+++|+..|.+.+..+.+||+++ .+.++++|.+++.+|++++..
T Consensus 651 ~~e~~k~~re~a~N~LE~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~~~~~Wleed~~~~~t~~~~ek~a~L~~l~~~ 730 (902)
T KOG0104|consen 651 QKEKEKSEREEASNELEAFLFELQDKLDDDEYAEVATEEEKKILKKKVSLLMDWLEEDGSQTPTEMLTEKLAELKKLETS 730 (902)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHhcCchHhhhcCHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999988999999999999999999999999987 568999999999999999999
Q ss_pred HHHHHhc
Q 006381 612 IIAKMYQ 618 (647)
Q Consensus 612 i~~r~~e 618 (647)
+..|..+
T Consensus 731 ~~~R~ee 737 (902)
T KOG0104|consen 731 KNFREEE 737 (902)
T ss_pred hhHHHHH
Confidence 9999776
No 20
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=1.3e-55 Score=471.32 Aligned_cols=337 Identities=25% Similarity=0.357 Sum_probs=287.4
Q ss_pred EEEEecCccceEEEEEECCeeEEEecCCCCcccceEEEEc----------------------------------------
Q 006381 9 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFT---------------------------------------- 48 (647)
Q Consensus 9 vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~---------------------------------------- 48 (647)
++|||||||||+||++++|.++++++..|.+.+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 6999999999999999999999999999999999999994
Q ss_pred -CCceEecHHHHHHHhhCcCch--HHhhHHhhCCCCCChhhhhcccCCCeEEEecCCCcceEEEEEcCceeEEeHHHHHH
Q 006381 49 -DSERLIGDAAKNQVAMNPINT--VFDAKRLIGRRFSDATVQSDTKLWPFKVIAGAGDKPMIVVTYKGEEKQFAAEEISS 125 (647)
Q Consensus 49 -~~~~~~G~~A~~~~~~~p~~~--~~~~k~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a 125 (647)
++..++|..|+.++..+|.++ +.++|++||...-.+ .....++++++
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~------------------------------~~~~~~e~l~a 131 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKP------------------------------QQVALFEDLVC 131 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCCc------------------------------cceeCHHHHHH
Confidence 346789999999999999988 779999999752110 01234899999
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEEeCCCCC-----HHHHHH---HHHHHHHcCCceeEecChhHHHHhcccccccccCCC
Q 006381 126 MVLIKMREIAEAYLGSTVKNAVVTVPAYFN-----DSQRQA---TKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVG 197 (647)
Q Consensus 126 ~~L~~l~~~a~~~~~~~~~~~ViTVPa~~~-----~~qr~~---l~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~ 197 (647)
++|++|++.++.+++.++.++|||||++|+ +.||++ +++||+.|||++++|++||+|||++|+.... .
T Consensus 132 ~iL~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~----~ 207 (450)
T PRK11678 132 AMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLT----E 207 (450)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccC----C
Confidence 999999999999999999999999999998 778766 6999999999999999999999999986433 4
Q ss_pred CeeEEEEEeCCCceEEEEEEEeCC-------eEEEEEeeCCCCCChHHHHHHHH-HHHHHHHHhh----ccCCC------
Q 006381 198 EKNVLIFDLGGGTFDVSLLTIEEG-------IFEVKATAGDTHLGGEDFDNRMV-NHFVQEFKRK----HKKDI------ 259 (647)
Q Consensus 198 ~~~vlV~D~GggT~dvsv~~~~~~-------~~~v~~~~~~~~lGG~~~d~~l~-~~l~~~~~~~----~~~~~------ 259 (647)
+..+||||+||||+|+|++++.++ ..+++++.| ..+||++||..|+ +++...|... ++.++
T Consensus 208 ~~~vlV~D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~~ 286 (450)
T PRK11678 208 EKRVLVVDIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFW 286 (450)
T ss_pred CCeEEEEEeCCCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhhh
Confidence 788999999999999999998653 468899888 6899999999998 6777777521 11100
Q ss_pred -----------------------------CCCHHHH------------HHHHHHHHHHHHHcCCCCcEEEEEccccCCce
Q 006381 260 -----------------------------SGNPRAL------------RRLRTSCERAKRTLSSTAQTTIEIDSLYEGID 298 (647)
Q Consensus 260 -----------------------------~~~~~~~------------~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~d 298 (647)
..+++.+ .+|+.+||++|+.||.+..+.+.++.+. .+
T Consensus 287 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~--~~ 364 (450)
T PRK11678 287 NAVAINDVPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS--DG 364 (450)
T ss_pred hhhhhhccchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccC--CC
Confidence 1123333 3688999999999999999998887654 35
Q ss_pred eEEeecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhH
Q 006381 299 FYSPITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYG 378 (647)
Q Consensus 299 ~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~G 378 (647)
+...|||++|+++++++++++..+|+++|+++++. ++.|+||||+|++|.|++.|++.||+.++ ...+|.++||.|
T Consensus 365 ~~~~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v-~~g~~~~sVa~G 440 (450)
T PRK11678 365 LATEISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPI-VGGDDFGSVTAG 440 (450)
T ss_pred cceeeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcE-EeCCCcchHHHH
Confidence 77899999999999999999999999999999876 58999999999999999999999976555 467999999999
Q ss_pred HHHHHHHH
Q 006381 379 AAVQAAIL 386 (647)
Q Consensus 379 Aa~~a~~~ 386 (647)
+|++|..+
T Consensus 441 la~~a~~~ 448 (450)
T PRK11678 441 LARWAQVV 448 (450)
T ss_pred HHHHHHhh
Confidence 99998753
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=100.00 E-value=3.4e-39 Score=337.61 Aligned_cols=307 Identities=22% Similarity=0.334 Sum_probs=237.1
Q ss_pred EEEecCccceEEEEEECCeeEEEecCCCCcccceEEEEcCC--c-eEecHHHHHHHhhCcCchHHhhHHhhCCCCCChhh
Q 006381 10 IGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDS--E-RLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDATV 86 (647)
Q Consensus 10 vGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~--~-~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~~ 86 (647)
+||||||+||+++.. ++..++. .||+|+|... . ..+|.+|+....+.|.+....
T Consensus 6 ~gIDlGt~~~~i~~~--~~~~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~~-------------- 62 (336)
T PRK13928 6 IGIDLGTANVLVYVK--GKGIVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVAI-------------- 62 (336)
T ss_pred eEEEcccccEEEEEC--CCCEEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEEE--------------
Confidence 899999999999876 3334443 5999999853 2 368999987665555443210
Q ss_pred hhcccCCCeEEEecCCCcceEEEEEcCceeEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHH
Q 006381 87 QSDTKLWPFKVIAGAGDKPMIVVTYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKDAG 166 (647)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~~~~~qr~~l~~Aa 166 (647)
.|. .+ -.+...++...+|+++.+.+..........+|||||++|+..||+++++|+
T Consensus 63 ------~pi-----~~-------------G~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~ 118 (336)
T PRK13928 63 ------RPL-----RD-------------GVIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAA 118 (336)
T ss_pred ------ccC-----CC-------------CeEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 011 00 122334566777777775543322223347999999999999999999999
Q ss_pred HHcCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHHHHHHHHH
Q 006381 167 VIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNH 246 (647)
Q Consensus 167 ~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~ 246 (647)
+.||++.+.+++||+|||++|+.... ++..++|||+||||||+++++... ....++..+||++||+.|+++
T Consensus 119 ~~ag~~~~~li~ep~Aaa~~~g~~~~----~~~~~lVvDiGggttdvsvv~~g~-----~~~~~~~~lGG~did~~i~~~ 189 (336)
T PRK13928 119 EQAGAKKVYLIEEPLAAAIGAGLDIS----QPSGNMVVDIGGGTTDIAVLSLGG-----IVTSSSIKVAGDKFDEAIIRY 189 (336)
T ss_pred HHcCCCceEecccHHHHHHHcCCccc----CCCeEEEEEeCCCeEEEEEEEeCC-----EEEeCCcCCHHHHHHHHHHHH
Confidence 99999999999999999999987543 356799999999999999998764 234567899999999999999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCC----cEEEEEc--cccCCceeEEeecHHHHHHHHHHHHHHHH
Q 006381 247 FVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTA----QTTIEID--SLYEGIDFYSPITRARFEELNMDLFRKCM 320 (647)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----~~~~~i~--~~~~~~d~~~~itr~~fe~~~~~~~~~~~ 320 (647)
+..+|....+ ...||++|+.++... ...+.+. .+..+.+..+.|+|++|++++.+.++++.
T Consensus 190 l~~~~~~~~~-------------~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~~~~~~eii~~~~~~i~ 256 (336)
T PRK13928 190 IRKKYKLLIG-------------ERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVTSEEIREALKEPVSAIV 256 (336)
T ss_pred HHHHhchhcC-------------HHHHHHHHHHhcccccccCCcEEEEecccccCCCceEEEECHHHHHHHHHHHHHHHH
Confidence 9877642211 357999999986532 1233332 22345667789999999999999999999
Q ss_pred HHHHHHHHHcC--CCCCCCC-eEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHHHHHHH
Q 006381 321 EPVEKCLRDAK--MDKSSVH-DVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAIL 386 (647)
Q Consensus 321 ~~i~~~l~~~~--~~~~~i~-~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~~ 386 (647)
+.|.+.|+.++ +....++ .|+|+||+|++|.|+++|++.| +.++....||+++||+|||+++..+
T Consensus 257 ~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~-~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 257 QAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEET-KVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred HHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhch
Confidence 99999999986 3445677 7999999999999999999999 6788888899999999999998764
No 22
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=1.3e-38 Score=332.10 Aligned_cols=306 Identities=25% Similarity=0.373 Sum_probs=242.2
Q ss_pred CEEEEecCccceEEEEEECCeeEEEecCCCCcccceEEEEcCCc---eEecHHHHHHHhhCcCchHHhhHHhhCCCCCCh
Q 006381 8 PAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSE---RLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDA 84 (647)
Q Consensus 8 ~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~---~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~ 84 (647)
..+||||||+|+++ +.+++.. +.| .||+|+++.+. ..+|.+|+....++|.++... + ++.
T Consensus 5 ~~~giDlGt~~~~i--~~~~~~~-~~~------~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~----pi~-- 67 (335)
T PRK13929 5 TEIGIDLGTANILV--YSKNKGI-ILN------EPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--R----PMK-- 67 (335)
T ss_pred CeEEEEcccccEEE--EECCCcE-Eec------CCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--e----cCC--
Confidence 36999999999985 4445443 444 49999998542 479999999888888765332 1 100
Q ss_pred hhhhcccCCCeEEEecCCCcceEEEEEcCceeEEeHHHHHHHHHHHHHHHHHHHhCCCCC--cEEEEeCCCCCHHHHHHH
Q 006381 85 TVQSDTKLWPFKVIAGAGDKPMIVVTYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTVK--NAVVTVPAYFNDSQRQAT 162 (647)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~--~~ViTVPa~~~~~qr~~l 162 (647)
+ | .+..-++++.+|++++..++..++..+. .+|||||++|+..||+++
T Consensus 68 -----------------~----------G---~I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l 117 (335)
T PRK13929 68 -----------------D----------G---VIADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAI 117 (335)
T ss_pred -----------------C----------C---ccCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHH
Confidence 0 0 1122378899999999998887776554 799999999999999999
Q ss_pred HHHHHHcCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHHHHH
Q 006381 163 KDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNR 242 (647)
Q Consensus 163 ~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~ 242 (647)
.+|++.||++.+.+++||+|||++|++... .+..++|+|+||||+|++++.+.. ....++..+||.+||+.
T Consensus 118 ~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~----~~~~~lvvDiG~gtt~v~vi~~~~-----~~~~~~~~~GG~~id~~ 188 (335)
T PRK13929 118 SDAVKNCGAKNVHLIEEPVAAAIGADLPVD----EPVANVVVDIGGGTTEVAIISFGG-----VVSCHSIRIGGDQLDED 188 (335)
T ss_pred HHHHHHcCCCeeEeecCHHHHHHhcCCCcC----CCceEEEEEeCCCeEEEEEEEeCC-----EEEecCcCCHHHHHHHH
Confidence 999999999999999999999999977543 356899999999999999998755 23456678999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCC----cEEEEEc--cccCCceeEEeecHHHHHHHHHHHH
Q 006381 243 MVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTA----QTTIEID--SLYEGIDFYSPITRARFEELNMDLF 316 (647)
Q Consensus 243 l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----~~~~~i~--~~~~~~d~~~~itr~~fe~~~~~~~ 316 (647)
|.+++.+.+. .... ...||++|+.++... ...+.+. .+..+....+.+++++|++++.+++
T Consensus 189 l~~~l~~~~~----~~~~---------~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~~i~i~~~~~~~~i~~~l 255 (335)
T PRK13929 189 IVSFVRKKYN----LLIG---------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLESKEIQGAMRESL 255 (335)
T ss_pred HHHHHHHHhC----cCcC---------HHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCeEEEEcHHHHHHHHHHHH
Confidence 9999976542 2211 258999999998632 2223332 2234555788999999999999999
Q ss_pred HHHHHHHHHHHHHcCCC--CCCCC-eEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHHHH
Q 006381 317 RKCMEPVEKCLRDAKMD--KSSVH-DVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQA 383 (647)
Q Consensus 317 ~~~~~~i~~~l~~~~~~--~~~i~-~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a 383 (647)
.++.+.|.++|+++... ...++ .|+|+||+|++|.+.++|++.| +.++....||+++||+||+..-
T Consensus 256 ~~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~-~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 256 LHILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEI-VVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred HHHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHH-CCCceeCCCHHHHHHHHHHHHH
Confidence 99999999999998643 34577 6999999999999999999999 6788888899999999999874
No 23
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=2.7e-36 Score=316.15 Aligned_cols=308 Identities=24% Similarity=0.366 Sum_probs=228.4
Q ss_pred CEEEEecCccceEEEEEECCeeEEEecCCCCcccceEEEEcCC-c--eEecHHHHHHHhhCcCchHHhhHHhhCCCCCCh
Q 006381 8 PAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDS-E--RLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDA 84 (647)
Q Consensus 8 ~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~-~--~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~ 84 (647)
..|||||||++++++....+ .++ .+||+|++... + .++|++|+....+.|.++...
T Consensus 6 ~~igIDlGt~~~~i~~~~~~--~~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~------------ 64 (334)
T PRK13927 6 NDLGIDLGTANTLVYVKGKG--IVL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAI------------ 64 (334)
T ss_pred ceeEEEcCcceEEEEECCCc--EEE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEE------------
Confidence 46999999999998543222 233 37999999754 2 479999988766555543211
Q ss_pred hhhhcccCCCeEEEecCCCcceEEEEEcCceeEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHH
Q 006381 85 TVQSDTKLWPFKVIAGAGDKPMIVVTYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKD 164 (647)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~~~~~qr~~l~~ 164 (647)
+|++ + | ..... +....+++++......... .-..+|+|||++|++.+|++++.
T Consensus 65 --------~pi~-----~----------G--~i~d~-~~~~~ll~~~~~~~~~~~~-~~~~~vi~vP~~~~~~~r~~~~~ 117 (334)
T PRK13927 65 --------RPMK-----D----------G--VIADF-DVTEKMLKYFIKKVHKNFR-PSPRVVICVPSGITEVERRAVRE 117 (334)
T ss_pred --------ecCC-----C----------C--eecCH-HHHHHHHHHHHHHHhhccC-CCCcEEEEeCCCCCHHHHHHHHH
Confidence 0110 0 0 00111 2334445554443322221 12389999999999999999999
Q ss_pred HHHHcCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHHHHHHH
Q 006381 165 AGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMV 244 (647)
Q Consensus 165 Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~ 244 (647)
|++.||++.+.+++||+|||++|+.... .+..++|||+||||||+++++... ....+...+||++||+.|.
T Consensus 118 a~~~ag~~~~~li~ep~aaa~~~g~~~~----~~~~~lvvDiGggttdvs~v~~~~-----~~~~~~~~lGG~~id~~l~ 188 (334)
T PRK13927 118 SALGAGAREVYLIEEPMAAAIGAGLPVT----EPTGSMVVDIGGGTTEVAVISLGG-----IVYSKSVRVGGDKFDEAII 188 (334)
T ss_pred HHHHcCCCeeccCCChHHHHHHcCCccc----CCCeEEEEEeCCCeEEEEEEecCC-----eEeeCCcCChHHHHHHHHH
Confidence 9999999999999999999999987543 356789999999999999998765 2344567899999999999
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCc----EEEEE--ccccCCceeEEeecHHHHHHHHHHHHHH
Q 006381 245 NHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQ----TTIEI--DSLYEGIDFYSPITRARFEELNMDLFRK 318 (647)
Q Consensus 245 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~----~~~~i--~~~~~~~d~~~~itr~~fe~~~~~~~~~ 318 (647)
+++.+++. .... ...||++|+.++.... ..+.+ +.+..+.+..+.|+|++|++++.+.+.+
T Consensus 189 ~~l~~~~~----~~~~---------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~ 255 (334)
T PRK13927 189 NYVRRNYN----LLIG---------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTITISSNEIREALQEPLSA 255 (334)
T ss_pred HHHHHHhC----cCcC---------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeEEEECHHHHHHHHHHHHHH
Confidence 99986553 2111 3578999999875432 22332 2333455668899999999999999999
Q ss_pred HHHHHHHHHHHcCCCC--CCCC-eEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHHHHHHH
Q 006381 319 CMEPVEKCLRDAKMDK--SSVH-DVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAIL 386 (647)
Q Consensus 319 ~~~~i~~~l~~~~~~~--~~i~-~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~~ 386 (647)
+.+.|.++|+++.... ..++ .|+|+||+|++|.++++|++.| +.++....+|+++||+||++++...
T Consensus 256 i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~-~~~v~~~~~P~~ava~Ga~~~~~~~ 325 (334)
T PRK13927 256 IVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEET-GLPVHVAEDPLTCVARGTGKALENI 325 (334)
T ss_pred HHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHH-CCCcEecCCHHHHHHHHHHHHHhhH
Confidence 9999999999886432 2244 5999999999999999999999 5788888999999999999998653
No 24
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=1.4e-35 Score=310.06 Aligned_cols=307 Identities=25% Similarity=0.360 Sum_probs=225.4
Q ss_pred EEEEecCccceEEEEEECCeeEEEecCCCCcccceEEEEcCC-----c--eEecHHHHHHHhhCcCchHHhhHHhhCCCC
Q 006381 9 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDS-----E--RLIGDAAKNQVAMNPINTVFDAKRLIGRRF 81 (647)
Q Consensus 9 vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~-----~--~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~ 81 (647)
-|||||||+||.++....| .++ ..||+|+|.++ + .++|++|+....+.|.+.. +++-+.
T Consensus 4 ~~giDlGt~~s~i~~~~~~--~~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~~pi~--- 69 (333)
T TIGR00904 4 DIGIDLGTANTLVYVKGRG--IVL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIV--AIRPMK--- 69 (333)
T ss_pred eeEEecCcceEEEEECCCC--EEE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEE--EEecCC---
Confidence 3999999999999875444 233 37999999743 3 5699999876655554431 111110
Q ss_pred CChhhhhcccCCCeEEEecCCCcceEEEEEcCceeEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHH
Q 006381 82 SDATVQSDTKLWPFKVIAGAGDKPMIVVTYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQA 161 (647)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~~~~~qr~~ 161 (647)
+ | .... -+....+++++........+.....+|+|||++|+..+|++
T Consensus 70 --------------------~----------G--~i~d-~~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~ 116 (333)
T TIGR00904 70 --------------------D----------G--VIAD-FEVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRA 116 (333)
T ss_pred --------------------C----------C--EEEc-HHHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHH
Confidence 0 0 0111 12334444444433322112222389999999999999999
Q ss_pred HHHHHHHcCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHHHH
Q 006381 162 TKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDN 241 (647)
Q Consensus 162 l~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~ 241 (647)
+++|++.||++.+.+++||+|||++|+.... .+..++|+|+||||||+++++... ....++..+||++||+
T Consensus 117 ~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~----~~~~~lVvDiG~gttdvs~v~~~~-----~~~~~~~~lGG~did~ 187 (333)
T TIGR00904 117 VKESALSAGAREVYLIEEPMAAAIGAGLPVE----EPTGSMVVDIGGGTTEVAVISLGG-----IVVSRSIRVGGDEFDE 187 (333)
T ss_pred HHHHHHHcCCCeEEEecCHHHHHHhcCCccc----CCceEEEEEcCCCeEEEEEEEeCC-----EEecCCccchHHHHHH
Confidence 9999999999999999999999999986443 356789999999999999998765 2344567899999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCc-----EEEEEcc--ccCCceeEEeecHHHHHHHHHH
Q 006381 242 RMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQ-----TTIEIDS--LYEGIDFYSPITRARFEELNMD 314 (647)
Q Consensus 242 ~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~-----~~~~i~~--~~~~~d~~~~itr~~fe~~~~~ 314 (647)
.|++++.+++. .... +..||++|+.++.... ..+.+.. ...+......|++++|.+++.+
T Consensus 188 ~l~~~l~~~~~----~~~~---------~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~ 254 (333)
T TIGR00904 188 AIINYIRRTYN----LLIG---------EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPRTIEITSVEVREALQE 254 (333)
T ss_pred HHHHHHHHHhc----ccCC---------HHHHHHHHHHHhccccccccccceeecCccccCCCCeEEEECHHHHHHHHHH
Confidence 99999986652 2111 3579999999975322 1222211 1123345678999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCC-CCC-C-eEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHHHHHH
Q 006381 315 LFRKCMEPVEKCLRDAKMDK-SSV-H-DVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAI 385 (647)
Q Consensus 315 ~~~~~~~~i~~~l~~~~~~~-~~i-~-~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~ 385 (647)
.+.++.+.|.+.|+.+.... .++ + .|+|+||+|++|.++++|++.| +.++....||+++||.||++++..
T Consensus 255 ~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~-~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 255 PVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKET-GLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred HHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHH-CCCceecCChHHHHHHHHHHHHhC
Confidence 99999999999999876432 233 3 6999999999999999999999 688888899999999999998653
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=1.3e-34 Score=303.90 Aligned_cols=309 Identities=25% Similarity=0.349 Sum_probs=231.5
Q ss_pred CEEEEecCccceEEEEEECCeeEEEecCCCCcccceEEEEcCC---ceEecHHHHHHHhhCcCchHHhhHHhhCCCCCCh
Q 006381 8 PAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDS---ERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDA 84 (647)
Q Consensus 8 ~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~---~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~ 84 (647)
..+||||||++|+++++..+ + ++ .+||+|++.+. ..++|.+|+......|.+.. ++
T Consensus 9 ~~vgiDlGt~~t~i~~~~~~-~-~~-------~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~---------- 67 (335)
T PRK13930 9 KDIGIDLGTANTLVYVKGKG-I-VL-------NEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIE--AI---------- 67 (335)
T ss_pred cceEEEcCCCcEEEEECCCC-E-EE-------ecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeE--Ee----------
Confidence 34999999999999887333 2 33 25999999752 35899999877654444321 00
Q ss_pred hhhhcccCCCeEEEecCCCcceEEEEEcCceeEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHH
Q 006381 85 TVQSDTKLWPFKVIAGAGDKPMIVVTYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKD 164 (647)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~~~~~qr~~l~~ 164 (647)
.|+. + | .+..-+....+++++.+.+..........+|+|+|++|+..+|+++.+
T Consensus 68 --------~pi~-----~----------G---~i~d~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~ 121 (335)
T PRK13930 68 --------RPLK-----D----------G---VIADFEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVRE 121 (335)
T ss_pred --------ecCC-----C----------C---eEcCHHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHH
Confidence 1110 0 1 111124466677777655544334446789999999999999999999
Q ss_pred HHHHcCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHHHHHHH
Q 006381 165 AGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMV 244 (647)
Q Consensus 165 Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~ 244 (647)
|++.+|++.+.+++||+|||++|+.... .....+|||+||||||++++.... ....+...+||.+||+.|.
T Consensus 122 ~~e~~g~~~~~lv~ep~AAa~a~g~~~~----~~~~~lVvDiG~gttdvs~v~~g~-----~~~~~~~~lGG~~id~~l~ 192 (335)
T PRK13930 122 AAEHAGAREVYLIEEPMAAAIGAGLPVT----EPVGNMVVDIGGGTTEVAVISLGG-----IVYSESIRVAGDEMDEAIV 192 (335)
T ss_pred HHHHcCCCeEEecccHHHHHHhcCCCcC----CCCceEEEEeCCCeEEEEEEEeCC-----EEeecCcCchhHHHHHHHH
Confidence 9999999999999999999999976543 244679999999999999997654 2235668999999999999
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCc----EEEEEc--cccCCceeEEeecHHHHHHHHHHHHHH
Q 006381 245 NHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQ----TTIEID--SLYEGIDFYSPITRARFEELNMDLFRK 318 (647)
Q Consensus 245 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~----~~~~i~--~~~~~~d~~~~itr~~fe~~~~~~~~~ 318 (647)
+++.+++. .... ...||++|+.++.... ..+.+. ....+.+..+.|++++|++++.+.+.+
T Consensus 193 ~~l~~~~~----~~~~---------~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~ 259 (335)
T PRK13930 193 QYVRRKYN----LLIG---------ERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIEISSEEVREALAEPLQQ 259 (335)
T ss_pred HHHHHHhC----CCCC---------HHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEEECHHHHHHHHHHHHHH
Confidence 99987642 2211 2579999999976432 122222 222344567889999999999999999
Q ss_pred HHHHHHHHHHHcCCCC--CCCCe-EEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHHHHHHH
Q 006381 319 CMEPVEKCLRDAKMDK--SSVHD-VVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAIL 386 (647)
Q Consensus 319 ~~~~i~~~l~~~~~~~--~~i~~-ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~~ 386 (647)
+.+.|.++|+.+.... ..++. |+|+||+|++|.++++|++.| +.++....+|+++||+||++.+...
T Consensus 260 i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~-~~~v~~~~~p~~ava~Ga~~~~~~~ 329 (335)
T PRK13930 260 IVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEET-GLPVHIAEDPLTCVARGTGKALENL 329 (335)
T ss_pred HHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhCh
Confidence 9999999999875332 23454 999999999999999999999 5778888899999999999997643
No 26
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=100.00 E-value=1.6e-31 Score=271.68 Aligned_cols=306 Identities=26% Similarity=0.383 Sum_probs=217.4
Q ss_pred CEEEEecCccceEEEEEECCeeEEEecCCCCcccceEEEEcCC---ceEecHHHHHHHhhCcCchHHhhHHhhCCCCCCh
Q 006381 8 PAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDS---ERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDA 84 (647)
Q Consensus 8 ~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~---~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~ 84 (647)
.-+||||||+++.++.-..| ++.+ .||+|+|+.. -..+|++|+....+.|.+..
T Consensus 2 ~~igIDLGT~~t~i~~~~~G---iv~~------epSvVA~~~~~~~i~avG~~A~~m~gktp~~i~-------------- 58 (326)
T PF06723_consen 2 KDIGIDLGTSNTRIYVKGKG---IVLN------EPSVVAYDKDTGKILAVGDEAKAMLGKTPDNIE-------------- 58 (326)
T ss_dssp SEEEEEE-SSEEEEEETTTE---EEEE------EES-EEEETTT--EEEESHHHHTTTTS-GTTEE--------------
T ss_pred CceEEecCcccEEEEECCCC---EEEe------cCcEEEEECCCCeEEEEhHHHHHHhhcCCCccE--------------
Confidence 35999999999998543334 3333 3999999864 24589999765544443320
Q ss_pred hhhhcccCCCeEEEecCCCcceEEEEEcCceeEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHH
Q 006381 85 TVQSDTKLWPFKVIAGAGDKPMIVVTYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKD 164 (647)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~~~~~qr~~l~~ 164 (647)
-.+|.+ +| .+.--++...+|+++.+.+.......-..++++||+.-++.+|+++.+
T Consensus 59 ------~~~Pl~---------------~G---vI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~ 114 (326)
T PF06723_consen 59 ------VVRPLK---------------DG---VIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALID 114 (326)
T ss_dssp ------EE-SEE---------------TT---EESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHH
T ss_pred ------EEcccc---------------CC---cccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHH
Confidence 001111 11 122346777788888777665322344579999999999999999999
Q ss_pred HHHHcCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHHHHHHH
Q 006381 165 AGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMV 244 (647)
Q Consensus 165 Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~ 244 (647)
|+..||.+.+.|+.||.|||+..+++-. ++...||+|+||||||++++.... +........||++||+.|.
T Consensus 115 a~~~aGa~~V~li~ep~AaAiGaGl~i~----~~~g~miVDIG~GtTdiavislgg-----iv~s~si~~gG~~~DeaI~ 185 (326)
T PF06723_consen 115 AARQAGARKVYLIEEPIAAAIGAGLDIF----EPRGSMIVDIGGGTTDIAVISLGG-----IVASRSIRIGGDDIDEAII 185 (326)
T ss_dssp HHHHTT-SEEEEEEHHHHHHHHTT--TT----SSS-EEEEEE-SS-EEEEEEETTE-----EEEEEEES-SHHHHHHHHH
T ss_pred HHHHcCCCEEEEecchHHHHhcCCCCCC----CCCceEEEEECCCeEEEEEEECCC-----EEEEEEEEecCcchhHHHH
Confidence 9999999999999999999999987654 367899999999999999997555 3333346899999999999
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCC----cEEEEE--ccccCCceeEEeecHHHHHHHHHHHHHH
Q 006381 245 NHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTA----QTTIEI--DSLYEGIDFYSPITRARFEELNMDLFRK 318 (647)
Q Consensus 245 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----~~~~~i--~~~~~~~d~~~~itr~~fe~~~~~~~~~ 318 (647)
+|++++|.-. +. ...||++|+.++... ...+.+ ..+..|....+.|+.+++.+++.+.+.+
T Consensus 186 ~~ir~~y~l~----Ig---------~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~ 252 (326)
T PF06723_consen 186 RYIREKYNLL----IG---------ERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVREAIEPPVDQ 252 (326)
T ss_dssp HHHHHHHSEE---------------HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHhhCcc----cC---------HHHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHHHHHHHHHH
Confidence 9999887422 21 568999999987542 223444 3456788889999999999999999999
Q ss_pred HHHHHHHHHHHcCCCC-CCC--CeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHHHH
Q 006381 319 CMEPVEKCLRDAKMDK-SSV--HDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQA 383 (647)
Q Consensus 319 ~~~~i~~~l~~~~~~~-~~i--~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a 383 (647)
+++.|+++|+...-.. .|| +.|+|+||+|+++.+.++|++.+ +.++....+|..+||.||....
T Consensus 253 I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~-~~pV~va~~P~~~va~G~~~~l 319 (326)
T PF06723_consen 253 IVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEET-GVPVRVADDPLTAVARGAGKLL 319 (326)
T ss_dssp HHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHH-SS-EEE-SSTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHH-CCCEEEcCCHHHHHHHHHHHHH
Confidence 9999999999653111 122 46999999999999999999999 7999999999999999998754
No 27
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.97 E-value=2.6e-30 Score=255.43 Aligned_cols=202 Identities=21% Similarity=0.323 Sum_probs=174.0
Q ss_pred eHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeEecChhHHHHhcccccccccCCCC
Q 006381 119 AAEEISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGE 198 (647)
Q Consensus 119 ~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~ 198 (647)
.-.+..+++|+++++.++.+++..+.++|+|||++|++.||+++.+|++.||++++.+++||.|||++|+..
T Consensus 37 ~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~-------- 108 (239)
T TIGR02529 37 VDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK-------- 108 (239)
T ss_pred EEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC--------
Confidence 446788999999999999999999999999999999999999999999999999999999999999988542
Q ss_pred eeEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHH
Q 006381 199 KNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKR 278 (647)
Q Consensus 199 ~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~ 278 (647)
..+|+|+||||||+++++. +.+ -...+..+||++||+.|.+.+. .+ +.+||++|+
T Consensus 109 -~~~vvDiGggtt~i~i~~~--G~i---~~~~~~~~GG~~it~~Ia~~~~--------i~-----------~~~AE~~K~ 163 (239)
T TIGR02529 109 -NGAVVDVGGGTTGISILKK--GKV---IYSADEPTGGTHMSLVLAGAYG--------IS-----------FEEAEEYKR 163 (239)
T ss_pred -CcEEEEeCCCcEEEEEEEC--CeE---EEEEeeecchHHHHHHHHHHhC--------CC-----------HHHHHHHHH
Confidence 2599999999999999854 332 2245678999999998876542 21 468999998
Q ss_pred HcCCCCcEEEEEccccCCceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHh
Q 006381 279 TLSSTAQTTIEIDSLYEGIDFYSPITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQD 358 (647)
Q Consensus 279 ~Ls~~~~~~~~i~~~~~~~d~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~ 358 (647)
.++ +.+++.+++.++++++...+++.|++. .++.|+|+||+|++|.+++.+++
T Consensus 164 ~~~----------------------~~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~e~l~~ 216 (239)
T TIGR02529 164 GHK----------------------DEEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFADVFEK 216 (239)
T ss_pred hcC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHHHHHHH
Confidence 754 145677899999999999999999864 36799999999999999999999
Q ss_pred hhCCccccCCCCchhhHHhHHHH
Q 006381 359 FFNGKELCKSINPDEAVAYGAAV 381 (647)
Q Consensus 359 ~f~~~~v~~~~~p~~ava~GAa~ 381 (647)
.| +.++..+.||++++|.|||+
T Consensus 217 ~l-g~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 217 QL-GLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred Hh-CCCcccCCCCCeehhheeec
Confidence 99 68888899999999999986
No 28
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.97 E-value=1.6e-28 Score=239.09 Aligned_cols=311 Identities=24% Similarity=0.329 Sum_probs=239.2
Q ss_pred CCEEEEecCccceEEEEEECCeeEEEecCCCCcccceEEEEcC--Cc---eEecHHHHHHHhhCcCchHHhhHHhhCCCC
Q 006381 7 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTD--SE---RLIGDAAKNQVAMNPINTVFDAKRLIGRRF 81 (647)
Q Consensus 7 ~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~--~~---~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~ 81 (647)
+..|||||||.|+.|..-..| ++.++ ||+|++.. +. ..+|.+|+...-+.|.+...
T Consensus 6 s~diGIDLGTanTlV~~k~kg---IVl~e------PSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni~a---------- 66 (342)
T COG1077 6 SNDIGIDLGTANTLVYVKGKG---IVLNE------PSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNIVA---------- 66 (342)
T ss_pred cccceeeecccceEEEEcCce---EEecC------ceEEEEeecCCCceEEEehHHHHHHhccCCCCceE----------
Confidence 457999999999999765333 55554 99999987 32 35899987655444443210
Q ss_pred CChhhhhcccCCCeEEEecCCCcceEEEEEcCceeEEeHHHHHHHHHHHHHHHHHHHhC-CCCCcEEEEeCCCCCHHHHH
Q 006381 82 SDATVQSDTKLWPFKVIAGAGDKPMIVVTYKGEEKQFAAEEISSMVLIKMREIAEAYLG-STVKNAVVTVPAYFNDSQRQ 160 (647)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~-~~~~~~ViTVPa~~~~~qr~ 160 (647)
+.+-.+ -.+.--++...+|+|+.+....... .....++++||..-++-+|+
T Consensus 67 ---------------iRPmkd-------------GVIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErr 118 (342)
T COG1077 67 ---------------IRPMKD-------------GVIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERR 118 (342)
T ss_pred ---------------EeecCC-------------cEeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHH
Confidence 000011 1234456778888888887654333 33447999999999999999
Q ss_pred HHHHHHHHcCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHHH
Q 006381 161 ATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD 240 (647)
Q Consensus 161 ~l~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d 240 (647)
++++|++.||...+.++.||.|||+..++.-.. +..-||||+||||||++++.+.+ +.+.....+||+.||
T Consensus 119 Ai~ea~~~aGa~~V~lieEp~aAAIGaglpi~e----p~G~mvvDIGgGTTevaVISlgg-----iv~~~Sirv~GD~~D 189 (342)
T COG1077 119 AIKEAAESAGAREVYLIEEPMAAAIGAGLPIME----PTGSMVVDIGGGTTEVAVISLGG-----IVSSSSVRVGGDKMD 189 (342)
T ss_pred HHHHHHHhccCceEEEeccHHHHHhcCCCcccC----CCCCEEEEeCCCceeEEEEEecC-----EEEEeeEEEecchhh
Confidence 999999999999999999999999988776543 55779999999999999999888 555556789999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCC--------cEEEEEccccCCceeEEeecHHHHHHHH
Q 006381 241 NRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTA--------QTTIEIDSLYEGIDFYSPITRARFEELN 312 (647)
Q Consensus 241 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~--------~~~~~i~~~~~~~d~~~~itr~~fe~~~ 312 (647)
+.+.+|++++|+--.+ ...+|++|....... +..+.-..+..+..-.++++..++.+.+
T Consensus 190 e~Ii~yvr~~~nl~IG-------------e~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal 256 (342)
T COG1077 190 EAIIVYVRKKYNLLIG-------------ERTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEAL 256 (342)
T ss_pred HHHHHHHHHHhCeeec-------------HHHHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHHHH
Confidence 9999999887653222 246889998874432 1233334555677788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCC--CCCCCCe-EEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHHHHHHHc
Q 006381 313 MDLFRKCMEPVEKCLRDAKM--DKSSVHD-VVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILS 387 (647)
Q Consensus 313 ~~~~~~~~~~i~~~l~~~~~--~~~~i~~-ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~~~ 387 (647)
++.++++++.++..|++..- ..+-++. ++|+||.|.+..+.+.|++.. +.++....+|-.+||+|+......+.
T Consensus 257 ~~~v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et-~~pv~ia~~pL~~Va~G~G~~le~~~ 333 (342)
T COG1077 257 EEPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEET-GVPVIIADDPLTCVAKGTGKALEALD 333 (342)
T ss_pred HHHHHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhcc-CCeEEECCChHHHHHhccchhhhhhH
Confidence 99999999999999998542 2222455 999999999999999999998 68888999999999999998877654
No 29
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.96 E-value=3.6e-27 Score=237.21 Aligned_cols=202 Identities=23% Similarity=0.361 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeEecChhHHHHhcccccccccCCCCee
Q 006381 121 EEISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKN 200 (647)
Q Consensus 121 ~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~ 200 (647)
.+.....|+++++.++.+++..+..++++||++|+..+|+++.+|++.||+++..+++||.|++.+|.+. .
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~---------~ 136 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID---------N 136 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC---------C
Confidence 5567788999999999998988999999999999999999999999999999999999999999887542 1
Q ss_pred EEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHc
Q 006381 201 VLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTL 280 (647)
Q Consensus 201 vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~L 280 (647)
.+|+|+||||||+++++ ++.+ ...++..+||++||+.|++++. .+ +.+||++|+.+
T Consensus 137 ~~vvDIGggtt~i~v~~--~g~~---~~~~~~~~GG~~it~~Ia~~l~--------i~-----------~~eAE~lK~~~ 192 (267)
T PRK15080 137 GAVVDIGGGTTGISILK--DGKV---VYSADEPTGGTHMSLVLAGAYG--------IS-----------FEEAEQYKRDP 192 (267)
T ss_pred cEEEEeCCCcEEEEEEE--CCeE---EEEecccCchHHHHHHHHHHhC--------CC-----------HHHHHHHHhcc
Confidence 58999999999999975 4433 2235679999999999987762 11 46889999875
Q ss_pred CCCCcEEEEEccccCCceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhh
Q 006381 281 SSTAQTTIEIDSLYEGIDFYSPITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFF 360 (647)
Q Consensus 281 s~~~~~~~~i~~~~~~~d~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f 360 (647)
+ +++++.+++.++++++.+.+++.++.. .++.|+|+||+|++|.+++.+++.|
T Consensus 193 ~----------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~l 245 (267)
T PRK15080 193 K----------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQT 245 (267)
T ss_pred C----------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHHh
Confidence 3 357789999999999999999999864 4789999999999999999999999
Q ss_pred CCccccCCCCchhhHHhHHHHHH
Q 006381 361 NGKELCKSINPDEAVAYGAAVQA 383 (647)
Q Consensus 361 ~~~~v~~~~~p~~ava~GAa~~a 383 (647)
+.++..+.+|+.++|.|||++|
T Consensus 246 -g~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 246 -GLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred -CCCcccCCCchHHHHHHHHhhC
Confidence 6888889999999999999874
No 30
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.92 E-value=2.4e-23 Score=220.95 Aligned_cols=194 Identities=22% Similarity=0.297 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHcCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCCh
Q 006381 157 SQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGG 236 (647)
Q Consensus 157 ~qr~~l~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG 236 (647)
...+.+.+|++.||+++..++.||.|+|++|..... .+..++|+|+||||||++++.- +.+. ......+||
T Consensus 158 ~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~~----~~~~~~vvDiG~gtt~i~i~~~--g~~~---~~~~i~~GG 228 (371)
T TIGR01174 158 TILRNLVKCVERCGLEVDNIVLSGLASAIAVLTEDE----KELGVCLIDIGGGTTDIAVYTG--GSIR---YTKVIPIGG 228 (371)
T ss_pred HHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcch----hcCCEEEEEeCCCcEEEEEEEC--CEEE---EEeeecchH
Confidence 456778889999999999999999999998854322 3567999999999999999853 3322 234468999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHcCCC------CcEEEEEccccCCceeEEeecHHHHHH
Q 006381 237 EDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSST------AQTTIEIDSLYEGIDFYSPITRARFEE 310 (647)
Q Consensus 237 ~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~------~~~~~~i~~~~~~~d~~~~itr~~fe~ 310 (647)
++||+.|.+.+. ..+.+||++|+.++.. ....+.++... .+....++|++|++
T Consensus 229 ~~it~~i~~~l~-------------------~~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~is~~~l~~ 287 (371)
T TIGR01174 229 NHITKDIAKALR-------------------TPLEEAERIKIKYGCASIPLEGPDENIEIPSVG--ERPPRSLSRKELAE 287 (371)
T ss_pred HHHHHHHHHHhC-------------------CCHHHHHHHHHHeeEecccCCCCCCEEEeccCC--CCCCeEEcHHHHHH
Confidence 999999876541 1157899999999763 23455555443 35667999999999
Q ss_pred HHHHHHHHHHHHHH-HHHHHcCCCCCCCCe-EEEEcCCCCcHHHHHHHHhhhCCccccC------------CCCchhhHH
Q 006381 311 LNMDLFRKCMEPVE-KCLRDAKMDKSSVHD-VVLVGGSTRIPKVQQLLQDFFNGKELCK------------SINPDEAVA 376 (647)
Q Consensus 311 ~~~~~~~~~~~~i~-~~l~~~~~~~~~i~~-ViLvGG~s~~p~v~~~l~~~f~~~~v~~------------~~~p~~ava 376 (647)
++.+.++++...|+ +.|++++.+ .+++. |+|+||+|++|.|++.+++.|+ .++.. ..+|..++|
T Consensus 288 ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~-~~vr~~~P~~~~~~~~~~~~p~~~~a 365 (371)
T TIGR01174 288 IIEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFD-NPVRIGLPQNIGGLTEDVNDPEYSTA 365 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhC-CCeEEECCCccCCchhhcCCcHHHHH
Confidence 99999999999997 999998876 56776 9999999999999999999994 33311 126788888
Q ss_pred hHHHHH
Q 006381 377 YGAAVQ 382 (647)
Q Consensus 377 ~GAa~~ 382 (647)
.|.++|
T Consensus 366 ~Gl~~~ 371 (371)
T TIGR01174 366 VGLLLY 371 (371)
T ss_pred HHHHhC
Confidence 888764
No 31
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.91 E-value=1.6e-22 Score=217.19 Aligned_cols=194 Identities=20% Similarity=0.250 Sum_probs=147.3
Q ss_pred HHHHHHHHHcCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHH
Q 006381 160 QATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDF 239 (647)
Q Consensus 160 ~~l~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~ 239 (647)
+.+.+|++.|||++..++.||.|+|.++..... ++..++|+|+||||||+++++ ++. +.......+||++|
T Consensus 169 ~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~e----~~~gv~vvDiGggtTdisv~~--~G~---l~~~~~i~~GG~~i 239 (420)
T PRK09472 169 KNIVKAVERCGLKVDQLIFAGLASSYAVLTEDE----RELGVCVVDIGGGTMDIAVYT--GGA---LRHTKVIPYAGNVV 239 (420)
T ss_pred HHHHHHHHHcCCeEeeEEehhhHHHHHhcChhh----hhcCeEEEEeCCCceEEEEEE--CCE---EEEEeeeechHHHH
Confidence 344679999999999999999999998854432 467899999999999999996 343 33444578999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHcCCC------CcEEEEEccccCCceeEEeecHHHHHHHHH
Q 006381 240 DNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSST------AQTTIEIDSLYEGIDFYSPITRARFEELNM 313 (647)
Q Consensus 240 d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~------~~~~~~i~~~~~~~d~~~~itr~~fe~~~~ 313 (647)
++.|+..+. .. ...||++|+.+... ....+.++...... ...++|.+|.+++.
T Consensus 240 t~dIa~~l~--------i~-----------~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~~--~~~i~~~~l~~ii~ 298 (420)
T PRK09472 240 TSDIAYAFG--------TP-----------PSDAEAIKVRHGCALGSIVGKDESVEVPSVGGRP--PRSLQRQTLAEVIE 298 (420)
T ss_pred HHHHHHHhC--------cC-----------HHHHHHHHHhcceeccccCCCCceeEecCCCCCC--CeEEcHHHHHHHHH
Confidence 999986551 11 46899999775432 23445555433222 24789999999999
Q ss_pred HHHHHHHHHHHH-------HHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCccccC------------CCCchhh
Q 006381 314 DLFRKCMEPVEK-------CLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCK------------SINPDEA 374 (647)
Q Consensus 314 ~~~~~~~~~i~~-------~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~------------~~~p~~a 374 (647)
+.++++++.|++ .|.+++.....++.|+|+||+|++|.|++.+++.|+ .++.. ..+|..+
T Consensus 299 ~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~-~~vri~~P~~~~g~~~~~~~P~~a 377 (420)
T PRK09472 299 PRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFH-TQVRIGAPLNITGLTDYAQEPYYS 377 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhC-CCeEEeCCcccCCChhhcCCcHHH
Confidence 977666666654 556667777778999999999999999999999993 43321 2489999
Q ss_pred HHhHHHHHHH
Q 006381 375 VAYGAAVQAA 384 (647)
Q Consensus 375 va~GAa~~a~ 384 (647)
+|.|.++|+.
T Consensus 378 ta~Gl~~~~~ 387 (420)
T PRK09472 378 TAVGLLHYGK 387 (420)
T ss_pred HHHHHHHHhh
Confidence 9999999976
No 32
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.84 E-value=4.8e-19 Score=184.86 Aligned_cols=198 Identities=25% Similarity=0.350 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHcCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChH
Q 006381 158 QRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGE 237 (647)
Q Consensus 158 qr~~l~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~ 237 (647)
--+.+.+|.+.+|+++..++.+|.|+|.+...+.. ++-.++++|+||||||+++++-.. +.+.+..++||+
T Consensus 166 ~~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~dE----kelGv~lIDiG~GTTdIai~~~G~-----l~~~~~ipvgG~ 236 (418)
T COG0849 166 ILENLEKCVERAGLKVDNIVLEPLASALAVLTEDE----KELGVALIDIGGGTTDIAIYKNGA-----LRYTGVIPVGGD 236 (418)
T ss_pred HHHHHHHHHHHhCCCeeeEEEehhhhhhhccCccc----HhcCeEEEEeCCCcEEEEEEECCE-----EEEEeeEeeCcc
Confidence 45678899999999999999999999987754433 577899999999999999996544 555666899999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCC------cEEEEEccccCCceeEEeecHHHHHHH
Q 006381 238 DFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTA------QTTIEIDSLYEGIDFYSPITRARFEEL 311 (647)
Q Consensus 238 ~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~------~~~~~i~~~~~~~d~~~~itr~~fe~~ 311 (647)
+++..|+.-|.-. +..||++|....... ...+.++...+. ...+++|..+.++
T Consensus 237 ~vT~DIa~~l~t~-------------------~~~AE~iK~~~g~a~~~~~~~~~~i~v~~vg~~--~~~~~t~~~ls~I 295 (418)
T COG0849 237 HVTKDIAKGLKTP-------------------FEEAERIKIKYGSALISLADDEETIEVPSVGSD--IPRQVTRSELSEI 295 (418)
T ss_pred HHHHHHHHHhCCC-------------------HHHHHHHHHHcCccccCcCCCcceEecccCCCc--ccchhhHHHHHHH
Confidence 9999998877322 468999999975432 334555544333 3678999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCcccc--C----------CCCchhhHHhHH
Q 006381 312 NMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELC--K----------SINPDEAVAYGA 379 (647)
Q Consensus 312 ~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~--~----------~~~p~~ava~GA 379 (647)
+++.+.+++..++..|++.+....-...|+|+||++.+|.+.+..++.|+ .++. . ..+|..+.|.|.
T Consensus 296 I~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~-~~vRig~P~~~~Gl~d~~~~p~fs~avGl 374 (418)
T COG0849 296 IEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFG-RPVRLGVPLNIVGLTDIARNPAFSTAVGL 374 (418)
T ss_pred HHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcC-CceEeCCCccccCchhhccCchhhhhHHH
Confidence 99999999999999999999876668899999999999999999999993 3221 1 236888999999
Q ss_pred HHHHHHH
Q 006381 380 AVQAAIL 386 (647)
Q Consensus 380 a~~a~~~ 386 (647)
.+++...
T Consensus 375 ~~~~~~~ 381 (418)
T COG0849 375 LLYGALM 381 (418)
T ss_pred HHHHhhc
Confidence 9998753
No 33
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.70 E-value=2.8e-16 Score=167.28 Aligned_cols=239 Identities=18% Similarity=0.158 Sum_probs=155.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHH-HHHHcCCceeEecChhHHHHhcccccccccCCCCee
Q 006381 122 EISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKD-AGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKN 200 (647)
Q Consensus 122 ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~~~~~qr~~l~~-Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~ 200 (647)
+....+++++....-. ....-..+++++|..++..+|+.+.+ +.+..|++.+.++.+|.+|+++++. .+
T Consensus 75 ~~~e~~~~~~~~~~l~-~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~---------~~ 144 (371)
T cd00012 75 DDMEKIWDHLFFNELK-VNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGR---------TT 144 (371)
T ss_pred HHHHHHHHHHHHHhcC-CCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCC---------Ce
Confidence 3445666665543111 12224579999999999888888877 5777999999999999999998753 47
Q ss_pred EEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHc
Q 006381 201 VLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTL 280 (647)
Q Consensus 201 vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~L 280 (647)
.+|+|+|+++|+++.+. +|..- ........+||.++|+.|.+++..+.. .... ..-...++.+|+.+
T Consensus 145 ~lVVDiG~~~t~i~pv~--~G~~~-~~~~~~~~~GG~~l~~~l~~~l~~~~~---~~~~-------~~~~~~~~~iKe~~ 211 (371)
T cd00012 145 GLVVDSGDGVTHVVPVY--DGYVL-PHAIKRLDLAGRDLTRYLKELLRERGY---ELNS-------SDEREIVRDIKEKL 211 (371)
T ss_pred EEEEECCCCeeEEEEEE--CCEEc-hhhheeccccHHHHHHHHHHHHHhcCC---Cccc-------hhHHHHHHHHHHhh
Confidence 89999999999998774 33221 122344689999999999998865321 0011 11134567777765
Q ss_pred CCCCcE---E----------EEE-ccccCCceeEEeecHHHH---HHHHHHH-----HHHHHHHHHHHHHHcCCC--CCC
Q 006381 281 SSTAQT---T----------IEI-DSLYEGIDFYSPITRARF---EELNMDL-----FRKCMEPVEKCLRDAKMD--KSS 336 (647)
Q Consensus 281 s~~~~~---~----------~~i-~~~~~~~d~~~~itr~~f---e~~~~~~-----~~~~~~~i~~~l~~~~~~--~~~ 336 (647)
..-... . ... -.+.++ ..+.++.+.| |-++.|. ...+.+.|.++|.....+ ..-
T Consensus 212 ~~v~~~~~~~~~~~~~~~~~~~~~~~lpd~--~~i~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l 289 (371)
T cd00012 212 CYVALDIEEEQDKSAKETSLLEKTYELPDG--RTIKVGNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDL 289 (371)
T ss_pred eeecCCHHHHHHhhhccCCccceeEECCCC--eEEEEChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHH
Confidence 332110 0 000 001122 2345555544 2333332 236778888888775433 223
Q ss_pred CCeEEEEcCCCCcHHHHHHHHhhhC----C-----ccccCCCCchhhHHhHHHHHHHH
Q 006381 337 VHDVVLVGGSTRIPKVQQLLQDFFN----G-----KELCKSINPDEAVAYGAAVQAAI 385 (647)
Q Consensus 337 i~~ViLvGG~s~~p~v~~~l~~~f~----~-----~~v~~~~~p~~ava~GAa~~a~~ 385 (647)
.+.|+|+||+|++|.+.++|++.+. . ..+....+|..++-+||+++|..
T Consensus 290 ~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 290 YSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred HhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCc
Confidence 6789999999999999999988773 1 12345568889999999999854
No 34
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.65 E-value=4.4e-16 Score=140.90 Aligned_cols=196 Identities=22% Similarity=0.323 Sum_probs=155.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeEecChhHHHHhcccccccccCCCCeeEEEE
Q 006381 125 SMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIF 204 (647)
Q Consensus 125 a~~L~~l~~~a~~~~~~~~~~~ViTVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~ 204 (647)
-.+.+++++.+++.+|..+++..-++|..--....+...+..+.||++++..++||+|||.-.+++.. .|+
T Consensus 75 veiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~dg---------~VV 145 (277)
T COG4820 75 VEIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLDDG---------GVV 145 (277)
T ss_pred HHHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccCCC---------cEE
Confidence 34678888999999999999999999999877777778888899999999999999999865554433 499
Q ss_pred EeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCC
Q 006381 205 DLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTA 284 (647)
Q Consensus 205 D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~ 284 (647)
|+|||||-+|+++-.+ ..+..|..-||..+...|+-+ ++++ +++||..|+.--..
T Consensus 146 DiGGGTTGIsi~kkGk-----Viy~ADEpTGGtHmtLvlAG~--------ygi~-----------~EeAE~~Kr~~k~~- 200 (277)
T COG4820 146 DIGGGTTGISIVKKGK-----VIYSADEPTGGTHMTLVLAGN--------YGIS-----------LEEAEQYKRGHKKG- 200 (277)
T ss_pred EeCCCcceeEEEEcCc-----EEEeccCCCCceeEEEEEecc--------cCcC-----------HhHHHHhhhccccc-
Confidence 9999999999997665 455567889998887766543 3333 45777777653211
Q ss_pred cEEEEEccccCCceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCcc
Q 006381 285 QTTIEIDSLYEGIDFYSPITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKE 364 (647)
Q Consensus 285 ~~~~~i~~~~~~~d~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~ 364 (647)
++.-..+.|+++++.+.+.+.++..+ +..++|+||+|.-|.+.+..++.| +.+
T Consensus 201 ---------------------~Eif~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~Fe~~l-~l~ 253 (277)
T COG4820 201 ---------------------EEIFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELFEKQL-ALQ 253 (277)
T ss_pred ---------------------hhcccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHHHHHh-ccc
Confidence 11222367899999999999988655 678999999999999999999999 789
Q ss_pred ccCCCCchhhHHhHHHH
Q 006381 365 LCKSINPDEAVAYGAAV 381 (647)
Q Consensus 365 v~~~~~p~~ava~GAa~ 381 (647)
+..+..|....-+|-|+
T Consensus 254 v~~P~~p~y~TPLgIA~ 270 (277)
T COG4820 254 VHLPQHPLYMTPLGIAS 270 (277)
T ss_pred cccCCCcceechhhhhh
Confidence 98888888877777765
No 35
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.64 E-value=1.9e-15 Score=161.02 Aligned_cols=297 Identities=20% Similarity=0.207 Sum_probs=181.4
Q ss_pred CEEEEecCccceEEEEEECCeeEEEecCCCCcccceEEEEcCC---------ceEecHHHHHHHhhCcCchHHhhHHhhC
Q 006381 8 PAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDS---------ERLIGDAAKNQVAMNPINTVFDAKRLIG 78 (647)
Q Consensus 8 ~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~---------~~~~G~~A~~~~~~~p~~~~~~~k~~lg 78 (647)
..|.||+||.++++++..+..|.+ .+||+|+...+ ..++|.+|.... ...
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~--------~~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~----~~~--------- 60 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQV--------VFPSIVGRPKDGKGMVGDAKDTFVGDEAQEKR----GGL--------- 60 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcE--------EccceeeEecccccccCCCcceEecchhhhcC----CCc---------
Confidence 469999999999999885554443 35888877532 235676653210 000
Q ss_pred CCCCChhhhhcccCCCeEEEecCCCcceEEEEEcCceeEEeHHHHHHHHHHHHHHHHHHHhCC--CCCcEEEEeCCCCCH
Q 006381 79 RRFSDATVQSDTKLWPFKVIAGAGDKPMIVVTYKGEEKQFAAEEISSMVLIKMREIAEAYLGS--TVKNAVVTVPAYFND 156 (647)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~--~~~~~ViTVPa~~~~ 156 (647)
.-.+|+. + | .+.--+....+++++... .++. .-..++||+|...+.
T Consensus 61 -----------~~~~P~~-----~----------G---~i~d~~~~e~i~~~~~~~---~l~~~~~~~~vll~~p~~~~~ 108 (373)
T smart00268 61 -----------ELKYPIE-----H----------G---IVENWDDMEKIWDYTFFN---ELRVEPEEHPVLLTEPPMNPK 108 (373)
T ss_pred -----------eecCCCc-----C----------C---EEeCHHHHHHHHHHHHhh---hcCCCCccCeeEEecCCCCCH
Confidence 0111211 0 0 122245556666666553 2222 234689999999999
Q ss_pred HHHHHHHHHH-HHcCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCC
Q 006381 157 SQRQATKDAG-VIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLG 235 (647)
Q Consensus 157 ~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lG 235 (647)
.+|+.+.+.+ +..|++.+.++.+|.+|+++++ ..+.+|+|+|+++++++.+. ++.. +........+|
T Consensus 109 ~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g---------~~~~lVVDiG~~~t~v~pv~--~G~~-~~~~~~~~~~G 176 (373)
T smart00268 109 SNREKILEIMFETFNFPALYIAIQAVLSLYASG---------RTTGLVIDSGDGVTHVVPVV--DGYV-LPHAIKRIDIA 176 (373)
T ss_pred HHHHHHHHHhhccCCCCeEEEeccHHHHHHhCC---------CCEEEEEecCCCcceEEEEE--CCEE-chhhheeccCc
Confidence 9999998876 5789999999999999998875 34689999999999999885 3322 12222346899
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCC-------------------cEEEEEccccCC
Q 006381 236 GEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTA-------------------QTTIEIDSLYEG 296 (647)
Q Consensus 236 G~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~-------------------~~~~~i~~~~~~ 296 (647)
|.++|+.|.+++...- ..... . .-...++.+|+.+..-. ...+. +.++
T Consensus 177 G~~l~~~l~~~l~~~~---~~~~~----~---~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~---lpdg 243 (373)
T smart00268 177 GRDLTDYLKELLSERG---YQFNS----S---AEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYE---LPDG 243 (373)
T ss_pred HHHHHHHHHHHHHhcC---CCCCc----H---HHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEE---CCCC
Confidence 9999999998886510 00110 0 11234555665543211 01111 1123
Q ss_pred ceeEEeecHHHH---HHHHHHH-----HHHHHHHHHHHHHHcCCCCC--CCCeEEEEcCCCCcHHHHHHHHhhh----C-
Q 006381 297 IDFYSPITRARF---EELNMDL-----FRKCMEPVEKCLRDAKMDKS--SVHDVVLVGGSTRIPKVQQLLQDFF----N- 361 (647)
Q Consensus 297 ~d~~~~itr~~f---e~~~~~~-----~~~~~~~i~~~l~~~~~~~~--~i~~ViLvGG~s~~p~v~~~l~~~f----~- 361 (647)
..+ .+..+.| |.++.|. ...+.+.|.++|..+..+.. -.+.|+|+||+|++|.+.++|.+.+ |
T Consensus 244 ~~~--~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~ 321 (373)
T smart00268 244 NTI--KVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPK 321 (373)
T ss_pred CEE--EEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCC
Confidence 332 3333332 2333331 23567777777776543211 1467999999999999999998877 2
Q ss_pred C--ccccCCCCchhhHHhHHHHHHH
Q 006381 362 G--KELCKSINPDEAVAYGAAVQAA 384 (647)
Q Consensus 362 ~--~~v~~~~~p~~ava~GAa~~a~ 384 (647)
. ..+..+.++..++=.||+++|.
T Consensus 322 ~~~v~v~~~~~~~~~~W~G~silas 346 (373)
T smart00268 322 KLKVKVIAPPERKYSVWLGGSILAS 346 (373)
T ss_pred CceeEEecCCCCccceEeCcccccC
Confidence 1 1233445666777788888764
No 36
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.57 E-value=4.6e-13 Score=139.86 Aligned_cols=212 Identities=17% Similarity=0.221 Sum_probs=139.3
Q ss_pred CCCcEE--EEeCCCCCHHHH-HHHHHHHHHc------------CCceeEecChhHHHHhccccccccc----CCCCeeEE
Q 006381 142 TVKNAV--VTVPAYFNDSQR-QATKDAGVIA------------GLNVMRIINEPTAAAIAYGLDKKAT----SVGEKNVL 202 (647)
Q Consensus 142 ~~~~~V--iTVPa~~~~~qr-~~l~~Aa~~A------------Gl~~~~li~Ep~Aaa~~y~~~~~~~----~~~~~~vl 202 (647)
.+.+++ ...|..+-..++ +.+++..... -+..+.++.||.+|.+.+..+.... ......++
T Consensus 109 ~~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~il 188 (344)
T PRK13917 109 EVVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVS 188 (344)
T ss_pred CcceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEE
Confidence 344444 589998854443 6666554221 1234678999999988776643321 12345789
Q ss_pred EEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHcCC
Q 006381 203 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSS 282 (647)
Q Consensus 203 V~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~ 282 (647)
|+|+|+||||++++. +..+. ....+....|..++.+.|.+.+..+. ++..+ ++. ++ +++ |..
T Consensus 189 vIDIG~~TtD~~v~~--~~~~~-~~~s~s~~~G~~~~~~~I~~~i~~~~---~~~~~--~~~---~i----e~~---l~~ 250 (344)
T PRK13917 189 VIDFGSGTTDLDTIQ--NLKRV-EEESFVIPKGTIDVYKRIASHISKKE---EGASI--TPY---ML----EKG---LEY 250 (344)
T ss_pred EEEcCCCcEEEEEEe--CcEEc-ccccccccchHHHHHHHHHHHHHhhC---CCCCC--CHH---HH----HHH---HHc
Confidence 999999999999985 33332 23344477899999999988885432 22222 221 11 221 211
Q ss_pred CCcEEEEEccccCCceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhhCC
Q 006381 283 TAQTTIEIDSLYEGIDFYSPITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNG 362 (647)
Q Consensus 283 ~~~~~~~i~~~~~~~d~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~ 362 (647)
. .+.+. .+.. +.+ ++++.++++++++++...|+..+.+ ..+++.|+|+||++++ +++.|++.|+.
T Consensus 251 g---~i~~~---~~~~--id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~f~~ 315 (344)
T PRK13917 251 G---ACKLN---QKTV--IDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHWYSD 315 (344)
T ss_pred C---cEEeC---CCce--Eeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHHcCC
Confidence 1 11111 1111 222 4667788889999998888887753 3478999999999987 89999999974
Q ss_pred ccccCCCCchhhHHhHHHHHHHHHcC
Q 006381 363 KELCKSINPDEAVAYGAAVQAAILSG 388 (647)
Q Consensus 363 ~~v~~~~~p~~ava~GAa~~a~~~~~ 388 (647)
. ....||..|.|+|...+|..+.+
T Consensus 316 ~--~~~~~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 316 V--EKADESQFANVRGYYKYGELLKN 339 (344)
T ss_pred e--EEcCChHHHHHHHHHHHHHHHhc
Confidence 3 56689999999999999986653
No 37
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.53 E-value=1.4e-12 Score=140.61 Aligned_cols=225 Identities=16% Similarity=0.118 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHH-HHHcCCceeEecChhHHHHhccccccccc-CCCCe
Q 006381 122 EISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKDA-GVIAGLNVMRIINEPTAAAIAYGLDKKAT-SVGEK 199 (647)
Q Consensus 122 ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~Aaa~~y~~~~~~~-~~~~~ 199 (647)
+....++.|+.... -.....-..+++|.|..++..+|+.+.+. .+..+++.+.+..+|.+|++++....... .....
T Consensus 82 d~~e~l~~~~~~~~-L~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~ 160 (414)
T PTZ00280 82 DLMEKFWEQCIFKY-LRCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTL 160 (414)
T ss_pred HHHHHHHHHHHHHh-hccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCce
Confidence 44455666543221 01122234589999999999999998775 45568999999999999998763321110 00234
Q ss_pred eEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHH
Q 006381 200 NVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRT 279 (647)
Q Consensus 200 ~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ 279 (647)
+-||+|+|.|+++++.+. +|..- ........+||.++++.|.++|.++ +..+... .....++.+|+.
T Consensus 161 tglVVDiG~~~T~i~PV~--~G~~l-~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~~-----~~~~~~~~iKe~ 227 (414)
T PTZ00280 161 TGTVIDSGDGVTHVIPVV--DGYVI-GSSIKHIPLAGRDITNFIQQMLRER-----GEPIPAE-----DILLLAQRIKEK 227 (414)
T ss_pred eEEEEECCCCceEEEEEE--CCEEc-ccceEEecCcHHHHHHHHHHHHHHc-----CCCCCcH-----HHHHHHHHHHHh
Confidence 569999999999998774 33221 1122235899999999999988542 1111111 112346667776
Q ss_pred cCCCCc-----------------EEEEEccccCCceeEEeecHHHHH---HHHHHHH------HHHHHHHHHHHHHcCCC
Q 006381 280 LSSTAQ-----------------TTIEIDSLYEGIDFYSPITRARFE---ELNMDLF------RKCMEPVEKCLRDAKMD 333 (647)
Q Consensus 280 Ls~~~~-----------------~~~~i~~~~~~~d~~~~itr~~fe---~~~~~~~------~~~~~~i~~~l~~~~~~ 333 (647)
++.... ..+..+...++....+.+..+.|. -++.|-+ ..+.+.|.++|.++..+
T Consensus 228 ~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d 307 (414)
T PTZ00280 228 YCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPID 307 (414)
T ss_pred cCcccCcHHHHHHHhhcCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChh
Confidence 643210 112222112233345677777763 3444422 14567777777766433
Q ss_pred C--CCCCeEEEEcCCCCcHHHHHHHHhhh
Q 006381 334 K--SSVHDVVLVGGSTRIPKVQQLLQDFF 360 (647)
Q Consensus 334 ~--~~i~~ViLvGG~s~~p~v~~~l~~~f 360 (647)
. .-.+.|+|+||+|.+|.+.++|++.+
T Consensus 308 ~r~~L~~nIvL~GG~s~~~Gf~eRL~~El 336 (414)
T PTZ00280 308 CRRPLYKNIVLSGGSTMFKGFDKRLQRDV 336 (414)
T ss_pred hHHHHhhcEEEeCCcccCcCHHHHHHHHH
Confidence 2 22577999999999999999998877
No 38
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.42 E-value=7.4e-12 Score=130.07 Aligned_cols=209 Identities=17% Similarity=0.196 Sum_probs=130.9
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHHHHHHc---------CCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceE
Q 006381 142 TVKNAVVTVPAYFNDSQRQATKDAGVIA---------GLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFD 212 (647)
Q Consensus 142 ~~~~~ViTVPa~~~~~qr~~l~~Aa~~A---------Gl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~d 212 (647)
.+..+|+..|..+...+|+.+++..... -+..+.+++||.+|.+.+..+..........++|+|+|++|+|
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD 180 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFD 180 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeee
Confidence 4557999999999988999998876532 2355788999999988776543222224667899999999999
Q ss_pred EEEEEEeCCeEEEEEeeCCCCCChHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCcEEEEEcc
Q 006381 213 VSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDS 292 (647)
Q Consensus 213 vsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~ 292 (647)
+.++. +..+ +....+....|-.++-+.|.+.+.+++ +.....+... .++ .|....... +
T Consensus 181 ~~~~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~----g~~~~~~~~~-------i~~---~l~~g~~~~--~-- 239 (320)
T TIGR03739 181 WLVAR--GMRL-VQKRSGSVNGGMSDIYRLLAAEISKDI----GTPAYRDIDR-------IDL---ALRTGKQPR--I-- 239 (320)
T ss_pred eehcc--CCEE-cccccCCchhHHHHHHHHHHHHHHhhc----CCCCccCHHH-------HHH---HHHhCCcee--e--
Confidence 98773 4333 344455567888888888877776654 3321111111 111 111111000 0
Q ss_pred ccCCceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCch
Q 006381 293 LYEGIDFYSPITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPD 372 (647)
Q Consensus 293 ~~~~~d~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~ 372 (647)
.+.. +.|+ +.++ .....+++++..+.+.+. ...+++.|+|+||++. .+++.|++.||...+....||.
T Consensus 240 --~gk~--~di~-~~~~-~~~~~~~~~v~~i~~~~~----~~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~~dp~ 307 (320)
T TIGR03739 240 --YQKP--VDIK-RCLE-LAETVAQQAVSTMMTWIG----APESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEVDEPM 307 (320)
T ss_pred --ccee--cCch-HHHH-HHHHHHHHHHHHHHHhcc----cCCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEecCCcH
Confidence 0111 1122 1122 233334444444443332 1245889999999998 4789999999876665678999
Q ss_pred hhHHhHHHHHH
Q 006381 373 EAVAYGAAVQA 383 (647)
Q Consensus 373 ~ava~GAa~~a 383 (647)
.|.|+|-..++
T Consensus 308 ~ANarG~~~~g 318 (320)
T TIGR03739 308 FANVRGFQIAG 318 (320)
T ss_pred HHHHHHHHHhh
Confidence 99999988765
No 39
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.41 E-value=7.8e-12 Score=134.42 Aligned_cols=311 Identities=18% Similarity=0.204 Sum_probs=176.9
Q ss_pred CCEEEEecCccceEEEEEECCeeEEEecCCCCcccceEEEEcCC-----ceEecHHHHHHHhhCcCchHHhhHHhhCCCC
Q 006381 7 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDS-----ERLIGDAAKNQVAMNPINTVFDAKRLIGRRF 81 (647)
Q Consensus 7 ~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~-----~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~ 81 (647)
..+|-||+|+.++++++..+..|.+ .+||++..... ..++|..+... .+..
T Consensus 4 ~~~vViD~Gs~~~k~G~age~~P~~--------v~ps~~~~~~~~~~~~~~~~g~~~~~~---~~~~------------- 59 (393)
T PF00022_consen 4 NKPVVIDNGSSTIKAGFAGEDLPRV--------VIPSVVGRPRDKNSSNDYYVGDEALSP---RSNL------------- 59 (393)
T ss_dssp SSEEEEEECSSEEEEEETTSSS-SE--------EEESEEEEESSSSSSSSCEETHHHHHT---GTGE-------------
T ss_pred CCEEEEECCCceEEEEECCCCCCCC--------cCCCccccccccccceeEEeecccccc---hhhe-------------
Confidence 4688999999999999974444433 35887776443 34677663321 0000
Q ss_pred CChhhhhcccCCCeEEEecCCCcceEEEEEcCceeEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHH
Q 006381 82 SDATVQSDTKLWPFKVIAGAGDKPMIVVTYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQA 161 (647)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~~~~~qr~~ 161 (647)
.-..|+. .| .+.--+.+..++.++.... -.....-..++++.|..++..+|+.
T Consensus 60 --------~~~~p~~---------------~g---~i~~~~~~e~i~~~~~~~~-l~~~~~~~~vll~~~~~~~~~~r~~ 112 (393)
T PF00022_consen 60 --------ELRSPIE---------------NG---VIVDWDALEEIWDYIFSNL-LKVDPSDHPVLLTEPPFNPRSQREK 112 (393)
T ss_dssp --------EEEESEE---------------TT---EESSHHHHHHHHHHHHHTT-T-SSGGGSEEEEEESTT--HHHHHH
T ss_pred --------eeeeecc---------------cc---ccccccccccccccccccc-cccccccceeeeeccccCCchhhhh
Confidence 0001110 01 1222344555566555432 1112234569999999999999988
Q ss_pred HHHH-HHHcCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHHH
Q 006381 162 TKDA-GVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD 240 (647)
Q Consensus 162 l~~A-a~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d 240 (647)
+.+. .+..|++.+.++.+|.+|+++++.. +-||+|+|.+.+.|+.+ .+|.. +........+||.+++
T Consensus 113 l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~---------tglVVD~G~~~t~v~pV--~dG~~-~~~~~~~~~~GG~~lt 180 (393)
T PF00022_consen 113 LAEILFEKFGVPSVYFIPSPLLALYASGRT---------TGLVVDIGYSSTSVVPV--VDGYV-LPHSIKRSPIGGDDLT 180 (393)
T ss_dssp HHHHHHHTS--SEEEEEEHHHHHHHHTTBS---------SEEEEEESSS-EEEEEE--ETTEE--GGGBEEES-SHHHHH
T ss_pred hhhhhhcccccceeeeeecccccccccccc---------cccccccceeeeeeeee--eeccc-cccccccccccHHHHH
Confidence 8765 5678999999999999999887543 45899999999998876 34322 1111223579999999
Q ss_pred HHHHHHHHHHHHh---hccCCCC----CCHHHHHHHHHHHHHHHHHcC---------------CCCcEEEEEccccCCce
Q 006381 241 NRMVNHFVQEFKR---KHKKDIS----GNPRALRRLRTSCERAKRTLS---------------STAQTTIEIDSLYEGID 298 (647)
Q Consensus 241 ~~l~~~l~~~~~~---~~~~~~~----~~~~~~~~L~~~~e~~K~~Ls---------------~~~~~~~~i~~~~~~~d 298 (647)
+.|.++|..+-.. .+..... ........-...++.+|+.+. ......+.++ ++.
T Consensus 181 ~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~lP---dg~- 256 (393)
T PF00022_consen 181 EYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYELP---DGQ- 256 (393)
T ss_dssp HHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE-T---TSS-
T ss_pred HHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceecccc---ccc-
Confidence 9999988773110 0000000 001111111233444454431 1222333332 333
Q ss_pred eEEeecHHHH---HHHHHHHH------------HHHHHHHHHHHHHcCCCCCC--CCeEEEEcCCCCcHHHHHHHHhhhC
Q 006381 299 FYSPITRARF---EELNMDLF------------RKCMEPVEKCLRDAKMDKSS--VHDVVLVGGSTRIPKVQQLLQDFFN 361 (647)
Q Consensus 299 ~~~~itr~~f---e~~~~~~~------------~~~~~~i~~~l~~~~~~~~~--i~~ViLvGG~s~~p~v~~~l~~~f~ 361 (647)
.+.+..+.| |-++.|.. ..+.+.|.+++.....+... .+.|+|+||+|++|.+.++|.+.+.
T Consensus 257 -~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~ 335 (393)
T PF00022_consen 257 -TIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELR 335 (393)
T ss_dssp -EEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHH
T ss_pred -ccccccccccccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHHhh
Confidence 345555444 22233322 14677788888766533221 5789999999999999999987762
Q ss_pred C-------ccccCCC-CchhhHHhHHHHHHHH
Q 006381 362 G-------KELCKSI-NPDEAVAYGAAVQAAI 385 (647)
Q Consensus 362 ~-------~~v~~~~-~p~~ava~GAa~~a~~ 385 (647)
. .++..+. +|..++=.||+++|..
T Consensus 336 ~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl 367 (393)
T PF00022_consen 336 SLLPSSTKVKVIAPPSDRQFAAWIGGSILASL 367 (393)
T ss_dssp HHSGTTSTEEEE--T-TTTSHHHHHHHHHHTS
T ss_pred hhhhccccceeccCchhhhhcccccceeeecc
Confidence 2 2344444 7889999999999863
No 40
>PTZ00452 actin; Provisional
Probab=99.39 E-value=3.3e-11 Score=127.68 Aligned_cols=215 Identities=16% Similarity=0.170 Sum_probs=136.7
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHH-HHHcCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCC
Q 006381 143 VKNAVVTVPAYFNDSQRQATKDA-GVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEG 221 (647)
Q Consensus 143 ~~~~ViTVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~ 221 (647)
-..+++|-|..++..+|+.+.+. .+..+++.+.+.+.|.+++++++. .+-+|+|+|.+.+.++-+. +|
T Consensus 100 ~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~---------~tglVVDiG~~~t~v~PV~--dG 168 (375)
T PTZ00452 100 DQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGK---------TIGLVVDSGEGVTHCVPVF--EG 168 (375)
T ss_pred cCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCC---------ceeeeecCCCCcceEEEEE--CC
Confidence 35689999999999999988775 566788899999999999887642 3569999999999998663 33
Q ss_pred eEEEEEeeCCCCCChHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCC----------------c
Q 006381 222 IFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTA----------------Q 285 (647)
Q Consensus 222 ~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----------------~ 285 (647)
..-. .......+||.++++.|.+.|..+ +...... .. ...++.+|+.++... .
T Consensus 169 ~~l~-~~~~r~~~gG~~lt~~L~~lL~~~-----~~~~~~~-~~----~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~ 237 (375)
T PTZ00452 169 HQIP-QAITKINLAGRLCTDYLTQILQEL-----GYSLTEP-HQ----RIIVKNIKERLCYTALDPQDEKRIYKESNSQD 237 (375)
T ss_pred EEec-cceEEeeccchHHHHHHHHHHHhc-----CCCCCCH-HH----HHHHHHHHHHhccccCcHHHHHHHhhccCCcC
Confidence 2221 222235799999999998887432 1111111 10 123555666654221 0
Q ss_pred EEEEEccccCCceeEEeecHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCCC--CCCCCeEEEEcCCCCcHHHHHH
Q 006381 286 TTIEIDSLYEGIDFYSPITRARF---EELNMDLF-----RKCMEPVEKCLRDAKMD--KSSVHDVVLVGGSTRIPKVQQL 355 (647)
Q Consensus 286 ~~~~i~~~~~~~d~~~~itr~~f---e~~~~~~~-----~~~~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~v~~~ 355 (647)
..+.+ -++. .+.+..+.| |-++.|-+ ..+.+.|.+++..+..+ ..-.+.|+|+||+|.+|.+.++
T Consensus 238 ~~y~L---PDg~--~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~R 312 (375)
T PTZ00452 238 SPYKL---PDGN--ILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANR 312 (375)
T ss_pred ceEEC---CCCC--EEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHH
Confidence 11221 2333 345566655 33344432 23556677777765433 2225789999999999999999
Q ss_pred HHhhh----CC-c--cccCCCCchhhHHhHHHHHHH
Q 006381 356 LQDFF----NG-K--ELCKSINPDEAVAYGAAVQAA 384 (647)
Q Consensus 356 l~~~f----~~-~--~v~~~~~p~~ava~GAa~~a~ 384 (647)
|++.+ |. . ++..+.++..++=+|++++|.
T Consensus 313 L~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilas 348 (375)
T PTZ00452 313 LSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCT 348 (375)
T ss_pred HHHHHHHhCCCCceeEEecCCCcceeEEECchhhcC
Confidence 98776 21 1 233344555677788888875
No 41
>PTZ00004 actin-2; Provisional
Probab=99.37 E-value=4.6e-11 Score=127.08 Aligned_cols=233 Identities=15% Similarity=0.145 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHHHHHHhC--CCCCcEEEEeCCCCCHHHHHHHHH-HHHHcCCceeEecChhHHHHhcccccccccCCCC
Q 006381 122 EISSMVLIKMREIAEAYLG--STVKNAVVTVPAYFNDSQRQATKD-AGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGE 198 (647)
Q Consensus 122 ev~a~~L~~l~~~a~~~~~--~~~~~~ViTVPa~~~~~qr~~l~~-Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~ 198 (647)
+....++.|+.. ..++ ..-..+++|-|..++..+|+.+.+ ..+..+++.+.+..+|.+++++++.
T Consensus 81 d~~e~i~~~~~~---~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~--------- 148 (378)
T PTZ00004 81 DDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGR--------- 148 (378)
T ss_pred HHHHHHHHHHHH---hhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCC---------
Confidence 344556666432 1222 233467899999999999987766 4567899999999999999887642
Q ss_pred eeEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHH
Q 006381 199 KNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKR 278 (647)
Q Consensus 199 ~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~ 278 (647)
.+-+|+|+|.+.++++.+. +|..- .......++||.++++.|.+.|..+ +..+. +... ...++.+|+
T Consensus 149 ~tglVVDiG~~~t~v~pV~--dG~~l-~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~--~~~~---~~~~~~iKe 215 (378)
T PTZ00004 149 TTGIVLDSGDGVSHTVPIY--EGYSL-PHAIHRLDVAGRDLTEYMMKILHER-----GTTFT--TTAE---KEIVRDIKE 215 (378)
T ss_pred ceEEEEECCCCcEEEEEEE--CCEEe-ecceeeecccHHHHHHHHHHHHHhc-----CCCCC--cHHH---HHHHHHHhh
Confidence 3569999999999998763 33322 2223346799999999999987542 11111 1111 223555665
Q ss_pred HcCCCC-----------------cEEEEEccccCCceeEEeecHHHH---HHHHHHH------HHHHHHHHHHHHHHcCC
Q 006381 279 TLSSTA-----------------QTTIEIDSLYEGIDFYSPITRARF---EELNMDL------FRKCMEPVEKCLRDAKM 332 (647)
Q Consensus 279 ~Ls~~~-----------------~~~~~i~~~~~~~d~~~~itr~~f---e~~~~~~------~~~~~~~i~~~l~~~~~ 332 (647)
.++... ...+.+ -++.. +.+..+.| |-++.|- ...+.+.|.+++..+..
T Consensus 216 ~~c~v~~d~~~~~~~~~~~~~~~~~~y~l---Pdg~~--i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~ 290 (378)
T PTZ00004 216 KLCYIALDFDEEMGNSAGSSDKYEESYEL---PDGTI--ITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDI 290 (378)
T ss_pred cceeecCCHHHHHhhhhcCccccceEEEC---CCCCE--EEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCCh
Confidence 543211 111221 23332 34555554 3445543 23456677777776543
Q ss_pred CCC--CCCeEEEEcCCCCcHHHHHHHHhhhC----C---ccccCCCCchhhHHhHHHHHHH
Q 006381 333 DKS--SVHDVVLVGGSTRIPKVQQLLQDFFN----G---KELCKSINPDEAVAYGAAVQAA 384 (647)
Q Consensus 333 ~~~--~i~~ViLvGG~s~~p~v~~~l~~~f~----~---~~v~~~~~p~~ava~GAa~~a~ 384 (647)
+.. -.+.|+|+||+|.+|.+.++|+..+. . .++..+.++..++=+||+++|.
T Consensus 291 d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 291 DIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred hHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccEEEecCCCCceeEEECcccccC
Confidence 321 25789999999999999999987762 1 1233445666777788888764
No 42
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.36 E-value=4.7e-11 Score=126.12 Aligned_cols=161 Identities=14% Similarity=0.168 Sum_probs=111.9
Q ss_pred CHHHHHHHHHHHHHcCCceeEecChhHHHHhcccc-ccc-ccCCCCe-eEEEEEeCCCceEEEEEEEeCCeEEEEEeeCC
Q 006381 155 NDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGL-DKK-ATSVGEK-NVLIFDLGGGTFDVSLLTIEEGIFEVKATAGD 231 (647)
Q Consensus 155 ~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaa~~y~~-~~~-~~~~~~~-~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~ 231 (647)
.....+.+.++++.||++...+..+|.|.+-.+.+ ... ....... .++++|+|+++++++++.-.. +.....
T Consensus 141 ~~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~-----~~~~r~ 215 (348)
T TIGR01175 141 RKEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGR-----MLFTRE 215 (348)
T ss_pred cHHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCe-----EEEEEE
Confidence 34567888899999999999999999998655521 000 0001233 499999999999999995433 334445
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCcEEEEEccccCCceeEEeecHHHHHHH
Q 006381 232 THLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYSPITRARFEEL 311 (647)
Q Consensus 232 ~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~d~~~~itr~~fe~~ 311 (647)
..+||.+|++.|.+.+ +.+ ...||+.|........ .-.++
T Consensus 216 i~~G~~~i~~~i~~~~--------~~~-----------~~~Ae~~k~~~~~~~~---------------------~~~~~ 255 (348)
T TIGR01175 216 VPFGTRQLTSELSRAY--------GLN-----------PEEAGEAKQQGGLPLL---------------------YDPEV 255 (348)
T ss_pred eechHHHHHHHHHHHc--------CCC-----------HHHHHHHHhcCCCCCc---------------------hhHHH
Confidence 7899999999887543 221 4678888775322110 01234
Q ss_pred HHHHHHHHHHHHHHHHHHc--CCCCCCCCeEEEEcCCCCcHHHHHHHHhhh
Q 006381 312 NMDLFRKCMEPVEKCLRDA--KMDKSSVHDVVLVGGSTRIPKVQQLLQDFF 360 (647)
Q Consensus 312 ~~~~~~~~~~~i~~~l~~~--~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f 360 (647)
+++.++++...|.+.|+-. ......++.|+|+||+++++.+.+.+++.|
T Consensus 256 ~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l 306 (348)
T TIGR01175 256 LRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRL 306 (348)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHH
Confidence 5666777777777777532 223345899999999999999999999999
No 43
>PTZ00281 actin; Provisional
Probab=99.33 E-value=4.9e-11 Score=126.68 Aligned_cols=215 Identities=19% Similarity=0.216 Sum_probs=138.3
Q ss_pred CCcEEEEeCCCCCHHHHHHHHH-HHHHcCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCC
Q 006381 143 VKNAVVTVPAYFNDSQRQATKD-AGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEG 221 (647)
Q Consensus 143 ~~~~ViTVPa~~~~~qr~~l~~-Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~ 221 (647)
-..+++|-|..++..+|+.+.+ ..+..+++.+.+...|.+++++++. .+-+|+|+|.+.+.++-+. +|
T Consensus 101 ~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~---------~tglVVDiG~~~t~v~PV~--dG 169 (376)
T PTZ00281 101 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR---------TTGIVMDSGDGVSHTVPIY--EG 169 (376)
T ss_pred cCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCC---------ceEEEEECCCceEEEEEEE--ec
Confidence 3568999999999999999877 5677899999999999999887642 3669999999999987553 22
Q ss_pred eEEEEEeeCCCCCChHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCC----------------c
Q 006381 222 IFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTA----------------Q 285 (647)
Q Consensus 222 ~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----------------~ 285 (647)
.. +........+||.++++.|.+.|..+ +..... . .- ...++.+|+.++.-. .
T Consensus 170 ~~-~~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~-~-~~---~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~ 238 (376)
T PTZ00281 170 YA-LPHAILRLDLAGRDLTDYMMKILTER-----GYSFTT-T-AE---REIVRDIKEKLAYVALDFEAEMQTAASSSALE 238 (376)
T ss_pred cc-chhheeeccCcHHHHHHHHHHHHHhc-----CCCCCc-H-HH---HHHHHHHHHhcEEecCCchHHHHhhhcCcccc
Confidence 11 12222336799999999999887542 111110 1 11 234667777754211 0
Q ss_pred EEEEEccccCCceeEEeecHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCCCCC--CCCeEEEEcCCCCcHHHHHH
Q 006381 286 TTIEIDSLYEGIDFYSPITRARF---EELNMDLF-----RKCMEPVEKCLRDAKMDKS--SVHDVVLVGGSTRIPKVQQL 355 (647)
Q Consensus 286 ~~~~i~~~~~~~d~~~~itr~~f---e~~~~~~~-----~~~~~~i~~~l~~~~~~~~--~i~~ViLvGG~s~~p~v~~~ 355 (647)
..+. +-++. .+.+..+.| |-++.|-+ ..+.+.|.+++..+..+.. -.+.|+|+||+|.+|.+.++
T Consensus 239 ~~y~---LPdg~--~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~R 313 (376)
T PTZ00281 239 KSYE---LPDGQ--VITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADR 313 (376)
T ss_pred eeEE---CCCCC--EEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHH
Confidence 1111 12232 244555544 34444422 1455667777766543221 15689999999999999999
Q ss_pred HHhhh----CC---ccccCCCCchhhHHhHHHHHHH
Q 006381 356 LQDFF----NG---KELCKSINPDEAVAYGAAVQAA 384 (647)
Q Consensus 356 l~~~f----~~---~~v~~~~~p~~ava~GAa~~a~ 384 (647)
|++.+ |. .++..+.++..++=+||+++|.
T Consensus 314 L~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilas 349 (376)
T PTZ00281 314 MNKELTALAPSTMKIKIIAPPERKYSVWIGGSILAS 349 (376)
T ss_pred HHHHHHHhCCCCcceEEecCCCCceeEEECcccccC
Confidence 88776 21 1244445667788889988875
No 44
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=99.31 E-value=1.1e-10 Score=122.57 Aligned_cols=181 Identities=18% Similarity=0.233 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHcCCceeEecChhHHHHhcccccccc--cCCCCeeEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCC
Q 006381 157 SQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKA--TSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHL 234 (647)
Q Consensus 157 ~qr~~l~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~--~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~l 234 (647)
..-+...++++.|||+...+=-+|.|.+-.+...... .......++++|+|+.++.++++. ++.+ .......+
T Consensus 136 ~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~--~g~~---~f~R~i~~ 210 (340)
T PF11104_consen 136 EIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQ--NGKP---IFSRSIPI 210 (340)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEE--TTEE---EEEEEES-
T ss_pred HHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEE--CCEE---EEEEEEee
Confidence 4566678899999999988877777765554332111 112346899999999999999985 4432 23344689
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCcEEEEEccccCCceeEEeecHHHHHHHHHH
Q 006381 235 GGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYSPITRARFEELNMD 314 (647)
Q Consensus 235 GG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~d~~~~itr~~fe~~~~~ 314 (647)
||.++++.|++.+.-. ..++|..|..-+... +...+.+.+
T Consensus 211 G~~~l~~~i~~~~~i~-------------------~~~Ae~~k~~~~l~~---------------------~~~~~~l~~ 250 (340)
T PF11104_consen 211 GGNDLTEAIARELGID-------------------FEEAEELKRSGGLPE---------------------EYDQDALRP 250 (340)
T ss_dssp SHHHHHHHHHHHTT---------------------HHHHHHHHHHT---------------------------HHHHHHH
T ss_pred CHHHHHHHHHHhcCCC-------------------HHHHHHHHhcCCCCc---------------------chHHHHHHH
Confidence 9999999998765221 346677666522110 223455667
Q ss_pred HHHHHHHHHHHHHHH--cCCCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCcccc---------CCC----------Cchh
Q 006381 315 LFRKCMEPVEKCLRD--AKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELC---------KSI----------NPDE 373 (647)
Q Consensus 315 ~~~~~~~~i~~~l~~--~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~---------~~~----------~p~~ 373 (647)
.++++...|++.++- .......|+.|+|+||++++|.|.+.|++.+ +.++. .+. .|..
T Consensus 251 ~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l-~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~ 329 (340)
T PF11104_consen 251 FLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEEL-GIPVEVINPFKNIKLDPKINSEYLQEDAPQF 329 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHH-TSEEEE--GGGGSB--TTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHH-CCceEEcChHHhCccCcccChhhhhhhhhHH
Confidence 777777777777762 2233457999999999999999999999999 44321 111 2566
Q ss_pred hHHhHHHHHH
Q 006381 374 AVAYGAAVQA 383 (647)
Q Consensus 374 ava~GAa~~a 383 (647)
++|.|.|++.
T Consensus 330 avA~GLAlR~ 339 (340)
T PF11104_consen 330 AVALGLALRG 339 (340)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhcC
Confidence 9999999874
No 45
>PTZ00466 actin-like protein; Provisional
Probab=99.25 E-value=4.6e-10 Score=119.09 Aligned_cols=215 Identities=14% Similarity=0.114 Sum_probs=137.3
Q ss_pred CCcEEEEeCCCCCHHHHHHHHH-HHHHcCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCC
Q 006381 143 VKNAVVTVPAYFNDSQRQATKD-AGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEG 221 (647)
Q Consensus 143 ~~~~ViTVPa~~~~~qr~~l~~-Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~ 221 (647)
-..+++|-|..++..+|+.+.+ ..+..+++.+.+...|.+|+++++. .+-+|+|+|.+.+.++-+. +|
T Consensus 106 ~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~---------~tglVVD~G~~~t~v~PV~--~G 174 (380)
T PTZ00466 106 EHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGK---------TNGTVLDCGDGVCHCVSIY--EG 174 (380)
T ss_pred cCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCC---------ceEEEEeCCCCceEEEEEE--CC
Confidence 3468899999999999999866 4577888999999999999887642 3669999999999997653 33
Q ss_pred eEEEEEeeCCCCCChHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCC---------------cE
Q 006381 222 IFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTA---------------QT 286 (647)
Q Consensus 222 ~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~---------------~~ 286 (647)
..- ........+||.++++.|.+.+.+. +.... .. .-+..++.+|+.++.-. ..
T Consensus 175 ~~~-~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~--~~---~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~ 243 (380)
T PTZ00466 175 YSI-TNTITRTDVAGRDITTYLGYLLRKN-----GHLFN--TS---AEMEVVKNMKENCCYVSFNMNKEKNSSEKALTTL 243 (380)
T ss_pred EEe-ecceeEecCchhHHHHHHHHHHHhc-----CCCCC--cH---HHHHHHHHHHHhCeEecCChHHHHhhccccccce
Confidence 221 2222336899999999999887431 11111 01 11234556666653210 01
Q ss_pred EEEEccccCCceeEEeecHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCCCCC--CCCeEEEEcCCCCcHHHHHHH
Q 006381 287 TIEIDSLYEGIDFYSPITRARF---EELNMDLF-----RKCMEPVEKCLRDAKMDKS--SVHDVVLVGGSTRIPKVQQLL 356 (647)
Q Consensus 287 ~~~i~~~~~~~d~~~~itr~~f---e~~~~~~~-----~~~~~~i~~~l~~~~~~~~--~i~~ViLvGG~s~~p~v~~~l 356 (647)
.+.+ .++. .+.+..+.| |-++.|-+ ..+.+.|.+++.++..+.. -...|+|+||+|.+|.+.++|
T Consensus 244 ~y~L---Pdg~--~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL 318 (380)
T PTZ00466 244 PYIL---PDGS--QILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRL 318 (380)
T ss_pred eEEC---CCCc--EEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHH
Confidence 1111 1333 244565555 33444422 2455667777776543321 257899999999999999999
Q ss_pred HhhhCC-------ccccCCCCchhhHHhHHHHHHH
Q 006381 357 QDFFNG-------KELCKSINPDEAVAYGAAVQAA 384 (647)
Q Consensus 357 ~~~f~~-------~~v~~~~~p~~ava~GAa~~a~ 384 (647)
++.+.. .++..+.++..++=+||+++|.
T Consensus 319 ~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 319 LNEIRKFAPKDITIRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred HHHHHHhCCCCceEEEecCCCCceeEEECchhhcC
Confidence 887721 1233445666677788888875
No 46
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=99.13 E-value=2.2e-10 Score=118.72 Aligned_cols=174 Identities=17% Similarity=0.285 Sum_probs=98.9
Q ss_pred ceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHHHHHHHHHHHHHH
Q 006381 172 NVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEF 251 (647)
Q Consensus 172 ~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~ 251 (647)
..+.+++||.||.+.+..... +...++|+|+||+|+|++++.- +.-.+....+...+|-..+-..+.+.+...
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~~~----~~~~~lVVDIGG~T~Dv~~v~~--~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~~- 213 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMDLD----EDESVLVVDIGGRTTDVAVVRG--GLPDISKCSGTPEIGVSDLYDAIAQALRSA- 213 (318)
T ss_dssp EEEEEEESSHHHHHHHHHTS-----TTSEEEEEEE-SS-EEEEEEEG--GG--EEEEEEETTSSTHHHHHHHHHHTT---
T ss_pred eeEEEEcccHHHHHHHHHhhc----ccCcEEEEEcCCCeEEeeeecC--CccccchhccCCchhHHHHHHHHHHHHHHh-
Confidence 457889999999888765522 3467999999999999998852 211223344556789988888888776541
Q ss_pred HhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCcEEEEEccccCCceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 006381 252 KRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYSPITRARFEELNMDLFRKCMEPVEKCLRDAK 331 (647)
Q Consensus 252 ~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~d~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~ 331 (647)
. ... +......+..... -+..++ ......+ ..+++.++++..++++.+.|.+.+.+
T Consensus 214 ~----~~~--s~~~~~~ii~~~~-~~~~~~----------~~i~~~~-----~~~~v~~~i~~~~~~l~~~i~~~~~~-- 269 (318)
T PF06406_consen 214 G----IDT--SELQIDDIIRNRK-DKGYLR----------QVINDED-----VIDDVSEVIEEAVEELINRILRELGD-- 269 (318)
T ss_dssp S----BHH--HHHHHHHHHHTTT--HHHHH----------HHSSSHH-----HHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred c----CCC--cHHHHHHHHHhhh-ccceec----------ccccchh-----hHHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 1 000 0001111111000 000000 0000000 23444455555555555555555542
Q ss_pred CCCCCCCeEEEEcCCCCcHHHHHHHHhhhC--CccccCCCCchhhHHhHHH
Q 006381 332 MDKSSVHDVVLVGGSTRIPKVQQLLQDFFN--GKELCKSINPDEAVAYGAA 380 (647)
Q Consensus 332 ~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~--~~~v~~~~~p~~ava~GAa 380 (647)
..+++.|+|+||++.+ +.+.|++.|+ ...+...-||..|.|+|-+
T Consensus 270 --~~~~~~I~~vGGGA~l--l~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 270 --FSDIDRIFFVGGGAIL--LKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp --S-S-SEEEEESTTHHH--HHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred --hccCCeEEEECCcHHH--HHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 3467899999999965 8999999985 3467788899999999965
No 47
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.99 E-value=2.4e-08 Score=99.86 Aligned_cols=169 Identities=16% Similarity=0.205 Sum_probs=106.8
Q ss_pred ecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHHHHHHHHHHHHHHHhhc
Q 006381 176 IINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKH 255 (647)
Q Consensus 176 li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~ 255 (647)
.++|.+|-+.......+. .=.|+|+||..+-+..+. ++.+.-......+..|+-.|.+.+++.|.
T Consensus 74 ~~~ei~~~~~g~~~~~~~------~~~vidiGgqd~k~i~~~--~g~~~~~~~n~~ca~Gtg~f~e~~a~~l~------- 138 (248)
T TIGR00241 74 IVTEISCHGKGANYLAPE------ARGVIDIGGQDSKVIKID--DGKVDDFTMNDKCAAGTGRFLEVTARRLG------- 138 (248)
T ss_pred ceEEhhHHHHHHHHHCCC------CCEEEEecCCeeEEEEEC--CCcEeeeeecCcccccccHHHHHHHHHcC-------
Confidence 567777765443222221 124999999999988886 55554445666678888888888877652
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHcC----CCCcEEEEEcc-ccCCceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 006381 256 KKDISGNPRALRRLRTSCERAKRTLS----STAQTTIEIDS-LYEGIDFYSPITRARFEELNMDLFRKCMEPVEKCLRDA 330 (647)
Q Consensus 256 ~~~~~~~~~~~~~L~~~~e~~K~~Ls----~~~~~~~~i~~-~~~~~d~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~ 330 (647)
.+ .++++..+..-. -+....+..+. .... +....++ ++++..+++.+...+.+.+...
T Consensus 139 -~~-----------~~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~~--l~~g~~~---~di~~~~~~~va~~i~~~~~~~ 201 (248)
T TIGR00241 139 -VS-----------VEELGSLAEKADRKAKISSMCTVFAESELISL--LAAGVKK---EDILAGVYESIAERVAEMLQRL 201 (248)
T ss_pred -CC-----------HHHHHHHHhcCCCCCCcCCEeEEEechhHHHH--HHCCCCH---HHHHHHHHHHHHHHHHHHHhhc
Confidence 21 223333333311 11112222211 0000 0011233 4566677777777776666543
Q ss_pred CCCCCCCC-eEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHHH
Q 006381 331 KMDKSSVH-DVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQ 382 (647)
Q Consensus 331 ~~~~~~i~-~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~ 382 (647)
. ++ .|+|+||.+++|++.+.+.+.+ +.++..+.+|..+.|+|||++
T Consensus 202 ~-----~~~~Vvl~GGva~n~~l~~~l~~~l-g~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 202 K-----IEAPIVFTGGVSKNKGLVKALEKKL-GMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred C-----CCCCEEEECccccCHHHHHHHHHHh-CCcEEcCCCccHHHHHHHHhC
Confidence 3 44 7999999999999999999999 788888999999999999973
No 48
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.90 E-value=4.6e-07 Score=89.80 Aligned_cols=157 Identities=15% Similarity=0.212 Sum_probs=108.6
Q ss_pred HHHHHHHHHHcCCceeEecChhHHHHhcccccccccC--CCCeeEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCCh
Q 006381 159 RQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATS--VGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGG 236 (647)
Q Consensus 159 r~~l~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~--~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG 236 (647)
-....+|+++|||....+=-|..|.--+|........ ....+++|+|+|+..+.+.++.-.. .-+..+..+||
T Consensus 151 v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk-----~ly~r~~~~g~ 225 (354)
T COG4972 151 VESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGK-----ILYTREVPVGT 225 (354)
T ss_pred hHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCe-----eeeEeeccCcH
Confidence 3445689999999988888888887666642111111 1123378999999999999986555 44455678999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCcEEEEEccccCCceeEEeecHHHHHHHHHHHH
Q 006381 237 EDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYSPITRARFEELNMDLF 316 (647)
Q Consensus 237 ~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~d~~~~itr~~fe~~~~~~~ 316 (647)
+.++..+.+.+ +.+ ...++.+|....... +--.++..+++
T Consensus 226 ~Qlt~~i~r~~--------~L~-----------~~~a~~~k~~~~~P~---------------------~y~~~vl~~f~ 265 (354)
T COG4972 226 DQLTQEIQRAY--------SLT-----------EEKAEEIKRGGTLPT---------------------DYGSEVLRPFL 265 (354)
T ss_pred HHHHHHHHHHh--------CCC-----------hhHhHHHHhCCCCCC---------------------chhHHHHHHHH
Confidence 99999987654 222 245666666544322 11234556666
Q ss_pred HHHHHHHHHHHHH--cCCCCCCCCeEEEEcCCCCcHHHHHHHHhhh
Q 006381 317 RKCMEPVEKCLRD--AKMDKSSVHDVVLVGGSTRIPKVQQLLQDFF 360 (647)
Q Consensus 317 ~~~~~~i~~~l~~--~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f 360 (647)
+.+.+.|.+.|+- +.-...+|+.|+|.||++.+-.+.+++.+.+
T Consensus 266 ~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl 311 (354)
T COG4972 266 GELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRL 311 (354)
T ss_pred HHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHh
Confidence 7777777776663 2234567999999999999999999999998
No 49
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=98.88 E-value=2.2e-07 Score=93.25 Aligned_cols=116 Identities=14% Similarity=0.201 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHH-HHHHcCCceeEecChhHHHHhcccccccccCCCCee
Q 006381 122 EISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKD-AGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKN 200 (647)
Q Consensus 122 ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~~~~~qr~~l~~-Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~ 200 (647)
+++.++++|..+.- -.....-.-++||-|++=+.+.|+.+.+ +.+...++...|+.+|+++|++.+ ..+
T Consensus 86 D~~~~~w~~~~~~~-Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~G---------rst 155 (426)
T KOG0679|consen 86 DLFEMQWRYAYKNQ-LKVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANG---------RST 155 (426)
T ss_pred HHHHHHHHHHHhhh-hhcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcC---------CCc
Confidence 45566666655321 1122223468999999999999988876 467788889999999999998764 346
Q ss_pred EEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHHHHHHHHHHHHH
Q 006381 201 VLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQE 250 (647)
Q Consensus 201 vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~ 250 (647)
.||+|+|++++.++-+ .+|.+-..+... ..+||+.++..+.+.|..+
T Consensus 156 alVvDiGa~~~svsPV--~DG~Vlqk~vvk-s~laGdFl~~~~~q~l~~~ 202 (426)
T KOG0679|consen 156 ALVVDIGATHTSVSPV--HDGYVLQKGVVK-SPLAGDFLNDQCRQLLEPK 202 (426)
T ss_pred eEEEEecCCCceeeee--ecceEeeeeeEe-cccchHHHHHHHHHHHhhc
Confidence 7999999999999876 355444444444 6899999999999988764
No 50
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=98.84 E-value=1.4e-07 Score=100.73 Aligned_cols=98 Identities=14% Similarity=0.212 Sum_probs=74.3
Q ss_pred CCcEEEEeCCCCCHHHHHHHHH-HHHHcCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCC
Q 006381 143 VKNAVVTVPAYFNDSQRQATKD-AGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEG 221 (647)
Q Consensus 143 ~~~~ViTVPa~~~~~qr~~l~~-Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~ 221 (647)
-..+++|-|..+....|..+.+ .++...++.+.+..++.+++.+.+... .+-+|+|+|.+.++|+-+- +|
T Consensus 106 ~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~-------~~g~ViD~G~~~t~v~PV~--DG 176 (444)
T COG5277 106 EHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSD-------ETGLVIDSGDSVTHVIPVV--DG 176 (444)
T ss_pred CCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCC-------CceEEEEcCCCceeeEeee--cc
Confidence 3468999999999999888765 567778888888988888887665322 4679999999999998663 22
Q ss_pred eEEEEEeeCCCCCChHHHHHHHHHHHHHH
Q 006381 222 IFEVKATAGDTHLGGEDFDNRMVNHFVQE 250 (647)
Q Consensus 222 ~~~v~~~~~~~~lGG~~~d~~l~~~l~~~ 250 (647)
+.+........+||++++..|.+.|...
T Consensus 177 -~~l~~a~~ri~~gG~~it~~l~~lL~~~ 204 (444)
T COG5277 177 -IVLPKAVKRIDIGGRDITDYLKKLLREK 204 (444)
T ss_pred -ccccccceeeecCcHHHHHHHHHHHhhc
Confidence 1122223346899999999999888764
No 51
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.60 E-value=5.9e-06 Score=82.69 Aligned_cols=71 Identities=20% Similarity=0.253 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCcccc-CCCCchhhHHhHHHHHHHH
Q 006381 310 ELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELC-KSINPDEAVAYGAAVQAAI 385 (647)
Q Consensus 310 ~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~-~~~~p~~ava~GAa~~a~~ 385 (647)
+++..+...+...+...+++.++. ..|+|+||.++.|.+++.+++.+ +.++. .+.+|..+-|+|||++|..
T Consensus 217 dI~aGl~~sia~rv~~~~~~~~i~----~~v~~~GGva~N~~l~~al~~~L-g~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 217 MVIAAYCQAMAERVVSLLERIGVE----EGFFITGGIAKNPGVVKRIERIL-GIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCC----CCEEEECcccccHHHHHHHHHHh-CCCceeCCCCccHHHHHHHHHHHHH
Confidence 344444555555454444443322 46899999999999999999999 56665 5778999999999999864
No 52
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=98.60 E-value=3.1e-06 Score=87.90 Aligned_cols=71 Identities=27% Similarity=0.344 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHHHHH
Q 006381 309 EELNMDLFRKCMEPVEK-CLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAA 384 (647)
Q Consensus 309 e~~~~~~~~~~~~~i~~-~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~ 384 (647)
++++..+...+...+.. +++..++ -+.|+++||.++.+.+.+.+++.+ +.++..+.+|..+-|+|||++|.
T Consensus 331 eDIaAGl~~SIa~rv~~~l~~~~~i----~~~VvftGGva~N~gvv~ale~~L-g~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 331 EDVAAAACHSVAEQVYEQQLQEIDV----REPVILVGGTSLIEGLVKALGDLL-GIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCC----CCcEEEECChhhhHHHHHHHHHHh-CCcEEECCcccHHHHHHHHHHhc
Confidence 34444555555554443 3443332 235999999999999999999999 68898999999999999999984
No 53
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=98.48 E-value=4.3e-05 Score=87.00 Aligned_cols=329 Identities=16% Similarity=0.232 Sum_probs=181.0
Q ss_pred EecHHHHHHHhh----CcCchHHhhHHhhCCC--------CCChhhhh----cccCCCeEEEecCCCcceEEE-EEc---
Q 006381 53 LIGDAAKNQVAM----NPINTVFDAKRLIGRR--------FSDATVQS----DTKLWPFKVIAGAGDKPMIVV-TYK--- 112 (647)
Q Consensus 53 ~~G~~A~~~~~~----~p~~~~~~~k~~lg~~--------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~--- 112 (647)
.+|.+|...... .....+++.||+|... |+...... .....|+.-..+..|.+...+ ...
T Consensus 331 RVG~EA~RLa~~r~GtEg~TGlSSPKRYLWDe~~~~q~WRFn~~~~~~~~eP~ata~p~~~liN~~G~~L~~l~~~~~r~ 410 (1002)
T PF07520_consen 331 RVGPEAARLASQRRGTEGSTGLSSPKRYLWDERPYEQGWRFNSAYVKSQNEPLATAAPFTNLINDDGQPLYQLDPEDERL 410 (1002)
T ss_pred eecHHHHHHHHHhcCCccccCCCCchhhccCCCccCCCcccCCCCCCCccCchhhhHHHHHhhcccCcchhhhcCccccC
Confidence 589888766554 2445577888888653 22111100 011122222223445554443 111
Q ss_pred -CceeEEeHHHHHHHHHHHHHHHHHHHhCC--------------CCCcEEEEeCCCCCHHHHHHHHHHHHHc--------
Q 006381 113 -GEEKQFAAEEISSMVLIKMREIAEAYLGS--------------TVKNAVVTVPAYFNDSQRQATKDAGVIA-------- 169 (647)
Q Consensus 113 -~~~~~~~~~ev~a~~L~~l~~~a~~~~~~--------------~~~~~ViTVPa~~~~~qr~~l~~Aa~~A-------- 169 (647)
.-...||-..+..++|..+..+|--+.+. ....+++|||..-...+|+.++++++.|
T Consensus 411 pvf~p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~l 490 (1002)
T PF07520_consen 411 PVFSPHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKAL 490 (1002)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 11234666777788888777777655432 3567999999999999999999888765
Q ss_pred CCc---------------------eeEecChhHHHHhccccc------------------cccc-------CCCCeeEEE
Q 006381 170 GLN---------------------VMRIINEPTAAAIAYGLD------------------KKAT-------SVGEKNVLI 203 (647)
Q Consensus 170 Gl~---------------------~~~li~Ep~Aaa~~y~~~------------------~~~~-------~~~~~~vlV 203 (647)
|.. +..=-+|.+|.=+-|.+. +... ..+.-+|.-
T Consensus 491 Gw~~~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriAS 570 (1002)
T PF07520_consen 491 GWHPWDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIAS 570 (1002)
T ss_pred CCCCCCCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEEE
Confidence 431 111135555553333211 1110 122346899
Q ss_pred EEeCCCceEEEEEEEe----CC-eEEEEEe---eCCCCCChHHHHHHHH-HHHHHHHHhh---cc-------------CC
Q 006381 204 FDLGGGTFDVSLLTIE----EG-IFEVKAT---AGDTHLGGEDFDNRMV-NHFVQEFKRK---HK-------------KD 258 (647)
Q Consensus 204 ~D~GggT~dvsv~~~~----~~-~~~v~~~---~~~~~lGG~~~d~~l~-~~l~~~~~~~---~~-------------~~ 258 (647)
+|+||||||+.|-... .+ ...+.-. --+-.+.|+||-..+. .+++..+.+. .| .+
T Consensus 571 IDIGGGTTDL~It~Y~ld~G~g~nv~I~P~q~FReGFkvAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll~~LfG~d 650 (1002)
T PF07520_consen 571 IDIGGGTTDLMITQYRLDDGQGSNVKITPEQLFREGFKVAGDDILLDVIQRIVLPALQQALKKAGVADPRALLSRLFGGD 650 (1002)
T ss_pred EecCCCcceeeEEEEEeccCCcceeEECcchhhhhhcccccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHHhCCc
Confidence 9999999999997765 22 2222211 1235688988866554 4444443322 11 11
Q ss_pred CCCC-HHH-------------HHHHHHHHHHHHHHcCCCCcEEEEEccc---------------------------cCCc
Q 006381 259 ISGN-PRA-------------LRRLRTSCERAKRTLSSTAQTTIEIDSL---------------------------YEGI 297 (647)
Q Consensus 259 ~~~~-~~~-------------~~~L~~~~e~~K~~Ls~~~~~~~~i~~~---------------------------~~~~ 297 (647)
-... .+. ..+++.++|..-.. +........+..+ ++-.
T Consensus 651 g~~~~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~~-~~~~~~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~Fdil 729 (1002)
T PF07520_consen 651 GQSDQDRVLRQQFTLQVFIPIGLAILKAYENYDPL-DPSAEIDATFGELLEREPPTAAVLDYINEEVRRLPAGAPDFDIL 729 (1002)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-ccCccccccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCCccee
Confidence 0000 000 11333444432110 0000000111000 0112
Q ss_pred eeEEeecHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCc-----------
Q 006381 298 DFYSPITRARFEELNM---DLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGK----------- 363 (647)
Q Consensus 298 d~~~~itr~~fe~~~~---~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~----------- 363 (647)
+..+.|+..++...+. -.+..++..+-+++..-+ .|-++|+|=-||+|.|+..+++..|-.
T Consensus 730 dv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y~-----CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y~ 804 (1002)
T PF07520_consen 730 DVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHYD-----CDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGYR 804 (1002)
T ss_pred cceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHhC-----CCEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCee
Confidence 4556788888888764 555566665656665444 578999999999999999999987310
Q ss_pred --------cccCCCCchhhHHhHHHHHHHHHc
Q 006381 364 --------ELCKSINPDEAVAYGAAVQAAILS 387 (647)
Q Consensus 364 --------~v~~~~~p~~ava~GAa~~a~~~~ 387 (647)
+-.+-.||...||.||.+.+....
T Consensus 805 tg~WYPF~~~~rI~dPKTTaaVGAmLc~La~~ 836 (1002)
T PF07520_consen 805 TGNWYPFNDQGRIDDPKTTAAVGAMLCLLAEG 836 (1002)
T ss_pred ecccccCCCCCcCCCchHHHHHHHHHHHHhcc
Confidence 112344899999999998775443
No 54
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=98.41 E-value=8.4e-06 Score=83.66 Aligned_cols=179 Identities=13% Similarity=0.120 Sum_probs=98.3
Q ss_pred EecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEe-CCeEEEEEeeCCCCCChHHHHHHHHHHHHHHHHh
Q 006381 175 RIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE-EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKR 253 (647)
Q Consensus 175 ~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~-~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~ 253 (647)
.+++|.+|-|....+..+ +.=.|+|+||-.+-+. .+. ++.+.-.....-+.-|.-.|=+.+++.|
T Consensus 249 ~vitEItcHA~GA~~l~P------~vrTIIDIGGQDsK~I--~ld~~G~V~dF~MNDKCAAGTGrFLE~mA~~L------ 314 (432)
T TIGR02259 249 HIRSEILCHGLGAHLMYP------GTRTVLDIGGQDTKGI--QIDDHGIVENFQMNDRCAAGCGRYLGYIADEM------ 314 (432)
T ss_pred ceeeeHHHHHHHHHHHCC------CCCEEEEeCCCceEEE--EEcCCCcEeeeeecCcccccchHHHHHHHHHc------
Confidence 456898887765432222 2337999999887754 444 3444433344434444434444444433
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHHHHcCCCCcEEEEEccccCCceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 006381 254 KHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYSPITRARFEELNMDLFRKCMEPVEKCLRDAKMD 333 (647)
Q Consensus 254 ~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~d~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~ 333 (647)
+.+ .. .|-..+.+.+....-+..+.+..++-.-. -+.--.+++ +++..+...+...+...+.+.. .
T Consensus 315 --gi~----le---El~~lA~~a~~pv~ISS~CtVFAESEVIs-lla~G~~re---DIaAGL~~SIA~Rv~s~l~r~~-~ 380 (432)
T TIGR02259 315 --NMG----LH---ELGPLAMKSSKPARINSTCTVFAGAELRD-RLALGDKRE---DILAGLHRAIILRAISIISRSG-G 380 (432)
T ss_pred --CCC----HH---HHHHHHhcCCCCCCcCCcceEEehHHHHH-HHHCCCCHH---HHHHHHHHHHHHHHHHHHhccc-C
Confidence 221 11 12222333333333333333333211000 001123333 4444555555555555555432 1
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHhhhC----CccccCCCCchhhHHhHHHHHH
Q 006381 334 KSSVHDVVLVGGSTRIPKVQQLLQDFFN----GKELCKSINPDEAVAYGAAVQA 383 (647)
Q Consensus 334 ~~~i~~ViLvGG~s~~p~v~~~l~~~f~----~~~v~~~~~p~~ava~GAa~~a 383 (647)
--..|+|+||.++.+.+.+.|++.++ +.++..+.+|+.+-|+|||++|
T Consensus 381 --i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 381 --ITDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred --CCCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 12479999999999999999999994 4668889999999999999975
No 55
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=98.36 E-value=6.8e-05 Score=76.15 Aligned_cols=159 Identities=19% Similarity=0.245 Sum_probs=92.7
Q ss_pred EEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHcC
Q 006381 202 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLS 281 (647)
Q Consensus 202 lV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls 281 (647)
.|+|+||--.-+..+ .+|.+.-.....-+.-|.-.|-+.+++.| +.++ ..|-+.+++.+..-.
T Consensus 232 tIiDIGGQD~K~i~i--~dG~v~df~mN~~CAAGtGrFLE~~A~~L--------gv~v-------~E~~~~A~~~~~~v~ 294 (396)
T COG1924 232 TVIDIGGQDSKVIKL--EDGKVDDFTMNDKCAAGTGRFLEVIARRL--------GVDV-------EELGKLALKATPPVK 294 (396)
T ss_pred EEEEecCcceeEEEE--eCCeeeeeEeccccccccchHHHHHHHHh--------CCCH-------HHHHHHHhcCCCCcc
Confidence 799999976666555 47765555554444444434444444443 2221 122223333333222
Q ss_pred CCCcEEEEEccccCCceeEEeecHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhh
Q 006381 282 STAQTTIEIDSLYEGIDFYSPITRARFEELNMDLFRKCMEPVEK-CLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFF 360 (647)
Q Consensus 282 ~~~~~~~~i~~~~~~~d~~~~itr~~fe~~~~~~~~~~~~~i~~-~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f 360 (647)
-+..+.+..++-. .+..=.-...|+++..+...+...+.. +++..... + -|+|+||.+....+.+++++.+
T Consensus 295 i~S~CaVF~eSev----i~~~~~G~~~EdI~AGl~~Sv~~~v~~~~~~~~~i~--~--~iv~~GGva~n~av~~ale~~l 366 (396)
T COG1924 295 INSRCAVFAESEV----ISALAEGASPEDILAGLAYSVAENVAEKVIKRVDIE--E--PIVLQGGVALNKAVVRALEDLL 366 (396)
T ss_pred cCCeeEEEehHHH----HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCC--C--CEEEECcchhhHHHHHHHHHHh
Confidence 2222222222100 000000012466666666666665554 55543322 2 2999999999999999999999
Q ss_pred CCccccCCCCchhhHHhHHHHHHHHH
Q 006381 361 NGKELCKSINPDEAVAYGAAVQAAIL 386 (647)
Q Consensus 361 ~~~~v~~~~~p~~ava~GAa~~a~~~ 386 (647)
+.++.+|.+|...-|.|||++|...
T Consensus 367 -g~~V~vP~~~ql~GAiGAAL~a~~~ 391 (396)
T COG1924 367 -GRKVIVPPYAQLMGAIGAALIAKEV 391 (396)
T ss_pred -CCeeecCCccchhhHHHHHHHHhhh
Confidence 7899999999999999999998643
No 56
>PRK10331 L-fuculokinase; Provisional
Probab=98.34 E-value=0.00011 Score=80.74 Aligned_cols=82 Identities=18% Similarity=0.205 Sum_probs=55.9
Q ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHH
Q 006381 302 PITRARFEELNMDLFRKCMEPVEKCLRDAK-MDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAA 380 (647)
Q Consensus 302 ~itr~~fe~~~~~~~~~~~~~i~~~l~~~~-~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa 380 (647)
.-+|.++ ..-+++.+.-.++..++... .....++.|.++||.+++|.+.+.+.+.| +.++.+.. ..++.++|||
T Consensus 357 ~~~~~~l---~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Advl-g~pV~~~~-~~e~~a~GaA 431 (470)
T PRK10331 357 NTTRGHF---YRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWNQIKANML-DIPIKVLD-DAETTVAGAA 431 (470)
T ss_pred CcCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccccCHHHHHHHHHhc-CCeeEecC-cccchHHHHH
Confidence 3456554 34444444444444333321 11234789999999999999999999999 67886554 4578899999
Q ss_pred HHHHHHcC
Q 006381 381 VQAAILSG 388 (647)
Q Consensus 381 ~~a~~~~~ 388 (647)
+.|+.-.+
T Consensus 432 ~la~~~~G 439 (470)
T PRK10331 432 MFGWYGVG 439 (470)
T ss_pred HHHHHhcC
Confidence 99986554
No 57
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=98.32 E-value=7.2e-05 Score=82.16 Aligned_cols=80 Identities=16% Similarity=0.188 Sum_probs=55.4
Q ss_pred eecHHHHHHHHHHHHHHHHHHHH---HHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhH
Q 006381 302 PITRARFEELNMDLFRKCMEPVE---KCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYG 378 (647)
Q Consensus 302 ~itr~~fe~~~~~~~~~~~~~i~---~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~G 378 (647)
.-+|.+| +.-+++.+.-.++ +.+++.+ ...++.|.++||.+++|.+.+.+.+.| +.+|.+..+ .++.++|
T Consensus 361 ~~~~~~l---~rAvlEgia~~~r~~~e~l~~~~--~~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pV~~~~~-~e~~~lG 433 (465)
T TIGR02628 361 NTTRGHI---YRAALEGLTAQLKRNLQMLEQIG--QFKASELLLVGGGSKNTLWNQIRANML-DIPVKVVDD-AETTVAG 433 (465)
T ss_pred CCCHHHH---HHHHHHHHHHHHHHHHHHHHHhc--CCCcceEEEecCccCCHHHHHHhhhhc-CCeeEeccC-CcchHHH
Confidence 3455554 3344444433333 3444432 124789999999999999999999999 688865554 5788999
Q ss_pred HHHHHHHHcC
Q 006381 379 AAVQAAILSG 388 (647)
Q Consensus 379 Aa~~a~~~~~ 388 (647)
||+.|+.-.+
T Consensus 434 aA~~a~~a~G 443 (465)
T TIGR02628 434 AAMFGFYGVG 443 (465)
T ss_pred HHHHHHHhcC
Confidence 9999986654
No 58
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=98.32 E-value=0.00016 Score=71.59 Aligned_cols=72 Identities=17% Similarity=0.105 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCcc----ccCCCCchhhHHhHHHHHH
Q 006381 309 EELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKE----LCKSINPDEAVAYGAAVQA 383 (647)
Q Consensus 309 e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~----v~~~~~p~~ava~GAa~~a 383 (647)
++++.-+...+...+...+++.+.. -+.|+|+||.++.+.+.+.|++.+++.+ +..+.+|+.+-|+|||++|
T Consensus 187 edI~aGl~~sia~r~~~~~~~~~~~---~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 187 PNILKGIHESMADRLAKLLKSLGAL---DGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCC---CCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 3444555555555555555544321 1359999999999999999999884333 5556789999999999974
No 59
>PRK13317 pantothenate kinase; Provisional
Probab=98.27 E-value=0.00015 Score=73.16 Aligned_cols=48 Identities=21% Similarity=0.266 Sum_probs=42.4
Q ss_pred CCeEEEEc-CCCCcHHHHHHHHhhhC--CccccCCCCchhhHHhHHHHHHH
Q 006381 337 VHDVVLVG-GSTRIPKVQQLLQDFFN--GKELCKSINPDEAVAYGAAVQAA 384 (647)
Q Consensus 337 i~~ViLvG-G~s~~p~v~~~l~~~f~--~~~v~~~~~p~~ava~GAa~~a~ 384 (647)
++.|+++| |.++.|.+++.+.+.+. +.++..+.+|..+.|+|||+++.
T Consensus 223 ~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 223 IENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 57899999 79999999999998873 46788899999999999999875
No 60
>PRK15027 xylulokinase; Provisional
Probab=98.24 E-value=0.00026 Score=78.19 Aligned_cols=80 Identities=21% Similarity=0.257 Sum_probs=57.0
Q ss_pred eecHHHHHHHHHHHHHHHHHHHH---HHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhH
Q 006381 302 PITRARFEELNMDLFRKCMEPVE---KCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYG 378 (647)
Q Consensus 302 ~itr~~fe~~~~~~~~~~~~~i~---~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~G 378 (647)
..+|.+|-.. +++.+.-.++ +.+++.+. .++.|+++||+++++.+.+++.+.+ +.++....+.+++.++|
T Consensus 355 ~~~~~~l~rA---vlEgia~~~~~~~~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~~~~~a~G 427 (484)
T PRK15027 355 QHGPNELARA---VLEGVGYALADGMDVVHACGI---KPQSVTLIGGGARSEYWRQMLADIS-GQQLDYRTGGDVGPALG 427 (484)
T ss_pred CCCHHHHHHH---HHHHHHHHHHHHHHHHHHcCC---CccEEEEeCcccCCHHHHHHHHHHh-CCeEEeecCCCcchHHH
Confidence 3456665443 3333333333 34444332 4789999999999999999999999 78886666677788999
Q ss_pred HHHHHHHHcC
Q 006381 379 AAVQAAILSG 388 (647)
Q Consensus 379 Aa~~a~~~~~ 388 (647)
||+.|+.-.|
T Consensus 428 aA~lA~~~~G 437 (484)
T PRK15027 428 AARLAQIAAN 437 (484)
T ss_pred HHHHHHHhcC
Confidence 9999986654
No 61
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=98.23 E-value=3.2e-05 Score=74.99 Aligned_cols=190 Identities=19% Similarity=0.198 Sum_probs=103.4
Q ss_pred HHHcCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHHHHHHHH
Q 006381 166 GVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVN 245 (647)
Q Consensus 166 a~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~ 245 (647)
.+..|.++..-=-|+++|++....... .+....|+|+||||||.+++.-.. .+.-+...| .|+-++..|..
T Consensus 105 ~~~lgv~V~igGvEAemAi~GALTTPG----t~~PlaIlDmG~GSTDAsii~~~g-~v~~iHlAG----AG~mVTmlI~s 175 (332)
T PF08841_consen 105 EEELGVPVEIGGVEAEMAILGALTTPG----TDKPLAILDMGGGSTDASIINRDG-EVTAIHLAG----AGNMVTMLINS 175 (332)
T ss_dssp HHHHTSEEEEECEHHHHHHHHHTTSTT------SSEEEEEE-SSEEEEEEE-TTS--EEEEEEE-----SHHHHHHHHHH
T ss_pred HHHHCCceEEccccHHHHHhcccCCCC----CCCCeEEEecCCCcccHHHhCCCC-cEEEEEecC----CchhhHHHHHH
Confidence 345688888788899999887755444 356789999999999999997554 333333333 46666666544
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHcCC-----------CCcEEEEEcccc-----------CC--ceeEE
Q 006381 246 HFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSS-----------TAQTTIEIDSLY-----------EG--IDFYS 301 (647)
Q Consensus 246 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~-----------~~~~~~~i~~~~-----------~~--~d~~~ 301 (647)
.| +++- +.-+|.+|+.=-. +....+.-+.+. ++ ..+..
T Consensus 176 EL--------Gl~d----------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~~ 237 (332)
T PF08841_consen 176 EL--------GLED----------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIPG 237 (332)
T ss_dssp HC--------T-S-----------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEESS
T ss_pred hh--------CCCC----------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCC
Confidence 33 3211 3467888875110 001111100000 00 11111
Q ss_pred eecHHHHHHHHHHHHHH-HHHHHHHHHHHcC--CCCCCCCeEEEEcCCCCcHHHHHHHHhhhCC-------ccccCCCCc
Q 006381 302 PITRARFEELNMDLFRK-CMEPVEKCLRDAK--MDKSSVHDVVLVGGSTRIPKVQQLLQDFFNG-------KELCKSINP 371 (647)
Q Consensus 302 ~itr~~fe~~~~~~~~~-~~~~i~~~l~~~~--~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~-------~~v~~~~~p 371 (647)
.++-+++..+=...-++ ++.-..++|++.. -...+|+.|+||||++.=--|-+++.+.+.. -.+.-..-|
T Consensus 238 ~~~lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGP 317 (332)
T PF08841_consen 238 DLSLEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGP 317 (332)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTT
T ss_pred CccHHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCc
Confidence 23333333332222222 2233445555543 2345799999999999877777888777732 245666689
Q ss_pred hhhHHhHHHHH
Q 006381 372 DEAVAYGAAVQ 382 (647)
Q Consensus 372 ~~ava~GAa~~ 382 (647)
..|||.|.++-
T Consensus 318 RNAVATGLvls 328 (332)
T PF08841_consen 318 RNAVATGLVLS 328 (332)
T ss_dssp STHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 99999999874
No 62
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=98.20 E-value=6.1e-06 Score=86.90 Aligned_cols=83 Identities=19% Similarity=0.278 Sum_probs=58.5
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHH------------cCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceE
Q 006381 145 NAVVTVPAYFNDSQRQATKDAGVI------------AGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFD 212 (647)
Q Consensus 145 ~~ViTVPa~~~~~qr~~l~~Aa~~------------AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~d 212 (647)
-.+||.+... ++.++++++. ||++...++. |.|++.+.... +++..++++|+||||++
T Consensus 90 ahIITg~~~~----~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLse-----Eke~gVa~IDIGgGTT~ 159 (475)
T PRK10719 90 AVIITGETAR----KENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSE-----ERNTRVLNIDIGGGTAN 159 (475)
T ss_pred EEEEEechhH----HHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhh-----hccCceEEEEeCCCceE
Confidence 4588887764 4555555555 6666666655 88888766532 25778999999999999
Q ss_pred EEEEEEeCCeEEEEEeeCCCCCChHHHHHH
Q 006381 213 VSLLTIEEGIFEVKATAGDTHLGGEDFDNR 242 (647)
Q Consensus 213 vsv~~~~~~~~~v~~~~~~~~lGG~~~d~~ 242 (647)
++++.-.. +.+.+...+||+.++..
T Consensus 160 iaVf~~G~-----l~~T~~l~vGG~~IT~D 184 (475)
T PRK10719 160 YALFDAGK-----VIDTACLNVGGRLIETD 184 (475)
T ss_pred EEEEECCE-----EEEEEEEecccceEEEC
Confidence 99996444 44455578999887543
No 63
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=98.01 E-value=0.00039 Score=77.25 Aligned_cols=51 Identities=20% Similarity=0.293 Sum_probs=43.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHHHHHHHcC
Q 006381 336 SVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSG 388 (647)
Q Consensus 336 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~~~~ 388 (647)
.++.|.++||.++++.+.+.+.+.| +.++.+..+ .++.++|||+.|+.-.+
T Consensus 401 ~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~-~e~~a~GaA~la~~~~G 451 (505)
T TIGR01314 401 PLNMIQATGGFASSEVWRQMMSDIF-EQEIVVPES-YESSCLGACILGLKALG 451 (505)
T ss_pred CCcEEEEecCcccCHHHHHHHHHHc-CCeeEecCC-CCcchHHHHHHHHHhcC
Confidence 4789999999999999999999999 688865544 46889999999986554
No 64
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=97.95 E-value=0.00017 Score=74.80 Aligned_cols=189 Identities=19% Similarity=0.278 Sum_probs=100.4
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHH-HHcCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEE-EEEEeCC
Q 006381 144 KNAVVTVPAYFNDSQRQATKDAG-VIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVS-LLTIEEG 221 (647)
Q Consensus 144 ~~~ViTVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvs-v~~~~~~ 221 (647)
.-+++|-|..|...-|+.+.+.. +.-+.+.+.+ +..|.+ |+... .+=+|+|+|.|-+.+. +++ |
T Consensus 100 ~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yv---a~qavl-ya~g~-------ttG~VvD~G~gvt~~vPI~e---G 165 (372)
T KOG0676|consen 100 HPVLLTEPPLNPKANREKLTQIMFETFNVPALYV---AIQAVL-YASGR-------TTGLVVDSGDGVTHVVPIYE---G 165 (372)
T ss_pred CceEeecCCCCchHhHHHHHHHhhhhcCccHhHH---HHHHHH-HHcCC-------eeEEEEEcCCCceeeeeccc---c
Confidence 57999999999999998887754 3334444333 223322 43322 3458999999966544 442 1
Q ss_pred eEEEEEeeCCCCCChHHHHHHHHHHHHHHHHhhccCCCC-CCHHHHHHHHHHHHHHHHHcCCCCc------------EEE
Q 006381 222 IFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDIS-GNPRALRRLRTSCERAKRTLSSTAQ------------TTI 288 (647)
Q Consensus 222 ~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~-~~~~~~~~L~~~~e~~K~~Ls~~~~------------~~~ 288 (647)
+.+...-....+||++++.-+...|.+ .+.... ... +.-++.+|+.++.... ..+
T Consensus 166 -~~lp~ai~~ldl~G~dlt~~l~~~L~~-----~g~s~~~~~~------~eIv~diKeklCyvald~~~e~~~~~~~~~l 233 (372)
T KOG0676|consen 166 -YALPHAILRLDLAGRDLTDYLLKQLRK-----RGYSFTTSAE------FEIVRDIKEKLCYVALDFEEEEETANTSSSL 233 (372)
T ss_pred -cccchhhheecccchhhHHHHHHHHHh-----cccccccccH------HHHHHHhHhhhcccccccchhhhcccccccc
Confidence 122222345789999999877766655 121111 111 1224455555432210 001
Q ss_pred EEc-cccCCceeEEeecHHHH---HHHHHHHH-----HHHHHHHHHHHHHc--CCCCCCCCeEEEEcCCCCcHHHHHHHH
Q 006381 289 EID-SLYEGIDFYSPITRARF---EELNMDLF-----RKCMEPVEKCLRDA--KMDKSSVHDVVLVGGSTRIPKVQQLLQ 357 (647)
Q Consensus 289 ~i~-~~~~~~d~~~~itr~~f---e~~~~~~~-----~~~~~~i~~~l~~~--~~~~~~i~~ViLvGG~s~~p~v~~~l~ 357 (647)
... .+-++.. +.+.-+.| |-+++|-+ ..+.+.+-+.+-++ .+.+.-...|+|+||++..|.+.+++.
T Consensus 234 ~~~y~lPDg~~--i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~ 311 (372)
T KOG0676|consen 234 ESSYELPDGQK--ITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQ 311 (372)
T ss_pred cccccCCCCCE--EecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHHH
Confidence 000 0112222 44444333 22233222 22223333333332 222333568999999999999999988
Q ss_pred hhh
Q 006381 358 DFF 360 (647)
Q Consensus 358 ~~f 360 (647)
+..
T Consensus 312 kEl 314 (372)
T KOG0676|consen 312 KEL 314 (372)
T ss_pred HHH
Confidence 866
No 65
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=97.84 E-value=0.00044 Score=66.21 Aligned_cols=222 Identities=20% Similarity=0.256 Sum_probs=133.7
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHH-HHHcCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCC
Q 006381 143 VKNAVVTVPAYFNDSQRQATKDA-GVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEG 221 (647)
Q Consensus 143 ~~~~ViTVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~ 221 (647)
...+.+|-|..-....|+.|.+. .+..||..+.+.-...-+.++-++. +=+|+|-|-|-|-+.-+. ++
T Consensus 101 ~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~---------tGvVvDSGDGVTHi~PVy--e~ 169 (389)
T KOG0677|consen 101 NCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLL---------TGVVVDSGDGVTHIVPVY--EG 169 (389)
T ss_pred cCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhccc---------ceEEEecCCCeeEEeeee--cc
Confidence 44689999999999999888775 6788998887765544443333322 237999999988776442 11
Q ss_pred eEEEEEeeCCCCCChHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCC-----------cEEEEE
Q 006381 222 IFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTA-----------QTTIEI 290 (647)
Q Consensus 222 ~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~-----------~~~~~i 290 (647)
+..-.-.+...+.|+++++-|.+++..+ .|..+.+.+ .+....+|+.|+.-. ++++-+
T Consensus 170 -~~l~HLtrRldvAGRdiTryLi~LLl~r---GYafN~tAD-------FETVR~iKEKLCYisYd~e~e~kLalETTvLv 238 (389)
T KOG0677|consen 170 -FVLPHLTRRLDVAGRDITRYLIKLLLRR---GYAFNHTAD-------FETVREIKEKLCYISYDLELEQKLALETTVLV 238 (389)
T ss_pred -eehhhhhhhccccchhHHHHHHHHHHhh---ccccccccc-------hHHHHHHHhhheeEeechhhhhHhhhhheeee
Confidence 1111123446789999999999888653 232222222 234555666654311 122222
Q ss_pred cc--ccCCceeEEeecHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCCCCCC--CCeEEEEcCCCCcHHHHHHHHh
Q 006381 291 DS--LYEGIDFYSPITRARF---EELNMDLF-----RKCMEPVEKCLRDAKMDKSS--VHDVVLVGGSTRIPKVQQLLQD 358 (647)
Q Consensus 291 ~~--~~~~~d~~~~itr~~f---e~~~~~~~-----~~~~~~i~~~l~~~~~~~~~--i~~ViLvGG~s~~p~v~~~l~~ 358 (647)
++ +-+|.- +.+-.+.| |.+++|.+ ..+.+++-++++.+.++... -.+|+|.||++.-|.+-.+|++
T Consensus 239 ~~YtLPDGRv--IkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEk 316 (389)
T KOG0677|consen 239 ESYTLPDGRV--IKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEK 316 (389)
T ss_pred eeeecCCCcE--EEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHH
Confidence 21 223322 34444555 34555543 24456677777776654322 4689999999999998877766
Q ss_pred hhC---------C---------ccccCCCCchhhHHhHHHHHHHHHcC
Q 006381 359 FFN---------G---------KELCKSINPDEAVAYGAAVQAAILSG 388 (647)
Q Consensus 359 ~f~---------~---------~~v~~~~~p~~ava~GAa~~a~~~~~ 388 (647)
.+. + ..+-.++.-...|-+|.|..|.++..
T Consensus 317 Elkqlyl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD 364 (389)
T KOG0677|consen 317 ELKQLYLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKD 364 (389)
T ss_pred HHHHHHHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcC
Confidence 541 1 12333444456788888888887764
No 66
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=97.81 E-value=0.0052 Score=68.15 Aligned_cols=81 Identities=26% Similarity=0.245 Sum_probs=49.6
Q ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHHH
Q 006381 303 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQ 382 (647)
Q Consensus 303 itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~ 382 (647)
.+|.+|-..+-+-+.-......+.|.+.. ...++.|.++||+++++++.+++.+.+ +.++..+.. .|+.+.|+|+.
T Consensus 370 ~~~~~l~ravlEgva~~l~~~~~~l~~~~--g~~~~~i~~~GGgars~~w~Qi~Ad~~-g~~v~~~~~-~e~~a~g~A~~ 445 (502)
T COG1070 370 HTRAHLARAVLEGVAFALADGLEALEELG--GKPPSRVRVVGGGARSPLWLQILADAL-GLPVVVPEV-EEAGALGGAAL 445 (502)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCccEEEEECCcccCHHHHHHHHHHc-CCeeEecCc-ccchHHHHHHH
Confidence 45555544333322222333334444442 234679999999999999999999999 677765433 45555555555
Q ss_pred HHHHc
Q 006381 383 AAILS 387 (647)
Q Consensus 383 a~~~~ 387 (647)
++...
T Consensus 446 ~~~~~ 450 (502)
T COG1070 446 AAAAL 450 (502)
T ss_pred HHHHh
Confidence 54443
No 67
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=97.26 E-value=0.06 Score=58.56 Aligned_cols=52 Identities=25% Similarity=0.367 Sum_probs=39.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHhhhCC-------------------ccccCCCCchhhHHhHHHHHHHHHc
Q 006381 336 SVHDVVLVGGSTRIPKVQQLLQDFFNG-------------------KELCKSINPDEAVAYGAAVQAAILS 387 (647)
Q Consensus 336 ~i~~ViLvGG~s~~p~v~~~l~~~f~~-------------------~~v~~~~~p~~ava~GAa~~a~~~~ 387 (647)
+.|-++|+|--||+|.|+..++...|- .+..+-.||...+|.||.+.+..+.
T Consensus 778 ~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yrvg~WYPF~k~grIddPKtTAaVGAMLC~Lsl~ 848 (1014)
T COG4457 778 DCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYRVGTWYPFRKQGRIDDPKTTAAVGAMLCALSLE 848 (1014)
T ss_pred cccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccceeccceecccccCcCCCcchHHHHHHHHHHHHhh
Confidence 457899999999999999999887631 0122334899999999998876543
No 68
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=97.23 E-value=0.0037 Score=65.68 Aligned_cols=122 Identities=17% Similarity=0.206 Sum_probs=84.7
Q ss_pred eEEeHHHHHHHHHHHHHHHHHHHhCCCCC-----cEEEEeCCCCCHHHHHHH-HHHHHHcCCceeEecChhHHHHhcccc
Q 006381 116 KQFAAEEISSMVLIKMREIAEAYLGSTVK-----NAVVTVPAYFNDSQRQAT-KDAGVIAGLNVMRIINEPTAAAIAYGL 189 (647)
Q Consensus 116 ~~~~~~ev~a~~L~~l~~~a~~~~~~~~~-----~~ViTVPa~~~~~qr~~l-~~Aa~~AGl~~~~li~Ep~Aaa~~y~~ 189 (647)
..++..++.+.+-+-+.-...+.+..+.+ .+|+-||-.|.....+.+ .-.....||....++-|+.||.+..|+
T Consensus 195 ~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGl 274 (618)
T KOG0797|consen 195 PYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGL 274 (618)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCc
Confidence 34566666665544443333444554433 589999999997775544 456778899999999999999887766
Q ss_pred cccccCCCCeeEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHHHHHHHHHHHH
Q 006381 190 DKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQ 249 (647)
Q Consensus 190 ~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~ 249 (647)
. ...|||+|+-+|.|+.++ +|.. +..+.--...||.||++.|+-++++
T Consensus 275 s---------s~CVVdiGAQkTsIaCVE--dGvs-~~ntri~L~YGGdDitr~f~~ll~r 322 (618)
T KOG0797|consen 275 S---------SACVVDIGAQKTSIACVE--DGVS-LPNTRIILPYGGDDITRCFLWLLRR 322 (618)
T ss_pred c---------ceeEEEccCcceeEEEee--cCcc-ccCceEEeccCCchHHHHHHHHHHh
Confidence 4 347999999999998885 3211 1112222568999999999877754
No 69
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=97.14 E-value=0.12 Score=52.47 Aligned_cols=71 Identities=24% Similarity=0.329 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhh----CCccccCCCCchhhHHhHHHHHH
Q 006381 310 ELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFF----NGKELCKSINPDEAVAYGAAVQA 383 (647)
Q Consensus 310 ~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f----~~~~v~~~~~p~~ava~GAa~~a 383 (647)
+++....+.+...+...+.+...... .|+|+||..+.+.+++.+.+.+ +..++..+..|....|.|||++|
T Consensus 197 ~Il~~a~~~la~~i~~~~~~~~~~~~---~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 197 DILAEAADELAELIKAVLKRLGPEKE---PVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTCCCC---SEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCC---eEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 34444455555666666665443221 2999999999977777764444 34455677889999999999986
No 70
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=97.05 E-value=0.0012 Score=63.58 Aligned_cols=75 Identities=23% Similarity=0.353 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC-CCCCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHHHHHH
Q 006381 309 EELNMDLFRKCMEPVEKCLRDAKMD-KSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAI 385 (647)
Q Consensus 309 e~~~~~~~~~~~~~i~~~l~~~~~~-~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~ 385 (647)
.+++.-+++.+.-.++..++...-. ...++.|+++||.+++|.+.+.+.+.| +.++.+..+ .++.|+|||+.|+.
T Consensus 121 ~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl-~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 121 ADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVL-GRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHH-TSEEEEESS-STHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHh-CCceEeCCC-CchHHHHHHHHHHh
Confidence 3444445555555444444433111 234899999999999999999999999 677765544 89999999999874
No 71
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=96.78 E-value=0.027 Score=59.88 Aligned_cols=86 Identities=17% Similarity=0.111 Sum_probs=51.5
Q ss_pred ceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHH-hhhCCccccCCCCchhhH
Q 006381 297 IDFYSPITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQ-DFFNGKELCKSINPDEAV 375 (647)
Q Consensus 297 ~d~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~-~~f~~~~v~~~~~p~~av 375 (647)
..-.+.||..+++++. ---..+..-++-+|++++++..+|+.|+|.||+++---+.+.+. -.+|.....+..--..++
T Consensus 289 ~~~~i~itq~DIr~~q-lAKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~iGLlP~~~~~kv~~~GN~a 367 (412)
T PF14574_consen 289 IGDDIYITQKDIREFQ-LAKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIRIGLLPDVPAEKVRFVGNAA 367 (412)
T ss_dssp SSS-EEEEHHHHHHHH-HHHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHHTTSS--S-GGGEEEEC-HH
T ss_pred CCCCEEEeHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhhcCCCCCccccCEEEECcHH
Confidence 3445789999998763 22344556678889999999999999999999998877777765 234433222222223466
Q ss_pred HhHHHHHH
Q 006381 376 AYGAAVQA 383 (647)
Q Consensus 376 a~GAa~~a 383 (647)
-.||.+..
T Consensus 368 l~GA~~~L 375 (412)
T PF14574_consen 368 LAGARMAL 375 (412)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 67777654
No 72
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=96.66 E-value=0.065 Score=54.86 Aligned_cols=55 Identities=25% Similarity=0.433 Sum_probs=39.7
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHhhhCCc---cccCCCCc----hhhHHhHHHHHHHHHcCC
Q 006381 334 KSSVHDVVLVGGSTRIPKVQQLLQDFFNGK---ELCKSINP----DEAVAYGAAVQAAILSGE 389 (647)
Q Consensus 334 ~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~---~v~~~~~p----~~ava~GAa~~a~~~~~~ 389 (647)
..+++.|+|.|-.+++|-+++.+++.|... ++ ..+.+ ....|.|||+.|.-+.+.
T Consensus 258 ~~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v-~~l~~~~~~aKeaA~GaAiIA~glaGG 319 (343)
T PF07318_consen 258 VPDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKV-RKLEGLARKAKEAAQGAAIIANGLAGG 319 (343)
T ss_pred cCCCCEEEEeccccccHHHHHHHHHHHHhhcccce-eecccccccchhhhhhHHHHhhhhhcc
Confidence 346789999999999999998888877321 22 12222 245899999999877754
No 73
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=96.50 E-value=0.019 Score=60.99 Aligned_cols=89 Identities=22% Similarity=0.225 Sum_probs=56.8
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCceeEe---cChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCC
Q 006381 145 NAVVTVPAYFNDSQRQATKDAGVIAGLNVMRI---INEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEG 221 (647)
Q Consensus 145 ~~ViTVPa~~~~~qr~~l~~Aa~~AGl~~~~l---i~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~ 221 (647)
-++||==+-=.+.+|..+..-+..||==++.- =.|+.-|+-..+..... ......++=+|+||||+.+++++-.+
T Consensus 87 AVIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S-~~~~~~V~NiDIGGGTtN~avf~~G~- 164 (473)
T PF06277_consen 87 AVIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALS-KEHHTVVANIDIGGGTTNIAVFDNGE- 164 (473)
T ss_pred cEEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHh-hhhCCeEEEEEeCCCceeEEEEECCE-
Confidence 36788777777888888888888887433322 23555554433222111 12467899999999999999996443
Q ss_pred eEEEEEeeCCCCCChHHH
Q 006381 222 IFEVKATAGDTHLGGEDF 239 (647)
Q Consensus 222 ~~~v~~~~~~~~lGG~~~ 239 (647)
++.+. -.++||+-|
T Consensus 165 ---v~~T~-cl~IGGRLi 178 (473)
T PF06277_consen 165 ---VIDTA-CLDIGGRLI 178 (473)
T ss_pred ---EEEEE-EEeeccEEE
Confidence 23333 267888654
No 74
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=96.40 E-value=0.0097 Score=66.71 Aligned_cols=85 Identities=18% Similarity=0.211 Sum_probs=64.6
Q ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHH
Q 006381 302 PITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAV 381 (647)
Q Consensus 302 ~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~ 381 (647)
.-+|..+..++.-+++.+.-.++..++...-....++.|.++||.++++.+.+.+.+.+ +.+|.+..+ .++.++|||+
T Consensus 409 ~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~-~e~~alGaA~ 486 (541)
T TIGR01315 409 DRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADAC-DMPVLIPYV-NEAVLHGAAM 486 (541)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHH-CCeeEecCh-hHHHHHHHHH
Confidence 44677777777777777776666665544222234789999999999999999999999 788866644 5688999999
Q ss_pred HHHHHcC
Q 006381 382 QAAILSG 388 (647)
Q Consensus 382 ~a~~~~~ 388 (647)
+|+.-.+
T Consensus 487 lA~~~~G 493 (541)
T TIGR01315 487 LGAKAAG 493 (541)
T ss_pred HHHHhcC
Confidence 9986554
No 75
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=96.40 E-value=0.13 Score=51.37 Aligned_cols=101 Identities=18% Similarity=0.186 Sum_probs=56.4
Q ss_pred CCcEEEEeCCCCCHH-HHHHHHHHHHHcCCceeEecChhHHHHhccc---ccccc-cCCCCeeEEEEEeCCCceEEEEEE
Q 006381 143 VKNAVVTVPAYFNDS-QRQATKDAGVIAGLNVMRIINEPTAAAIAYG---LDKKA-TSVGEKNVLIFDLGGGTFDVSLLT 217 (647)
Q Consensus 143 ~~~~ViTVPa~~~~~-qr~~l~~Aa~~AGl~~~~li~Ep~Aaa~~y~---~~~~~-~~~~~~~vlV~D~GggT~dvsv~~ 217 (647)
-..+|+|=|.+--+. |.....-..+.-+|..+.=. +.|+.+++- .+... ......+.+|+|.|-+-|-+.-+-
T Consensus 93 ~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~kt--taa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v 170 (400)
T KOG0680|consen 93 DHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVLKT--TAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVV 170 (400)
T ss_pred cceEEEecccccccchhhhHHHHHHHHhccceEeec--CHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhh
Confidence 346899999865443 44444444566676654333 333333332 22211 013456899999999877665432
Q ss_pred EeCCeEEEEEeeCCCCCChHHHHHHHHHHHH
Q 006381 218 IEEGIFEVKATAGDTHLGGEDFDNRMVNHFV 248 (647)
Q Consensus 218 ~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~ 248 (647)
.+.....+.. ...+||..++..|.+++.
T Consensus 171 --~g~~~~qaV~-RiDvGGK~LTn~LKE~iS 198 (400)
T KOG0680|consen 171 --KGIPYYQAVK-RIDVGGKALTNLLKETIS 198 (400)
T ss_pred --cCcchhhceE-EeecchHHHHHHHHHHhh
Confidence 2211111222 367999999999888764
No 76
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=96.32 E-value=0.057 Score=58.05 Aligned_cols=181 Identities=18% Similarity=0.177 Sum_probs=102.0
Q ss_pred eEEEEEeCCCceEEEEEEEeC-------CeEEEEEeeCCCCCChHHHHHHHHHHHHHHHH---------hhccCCCCCCH
Q 006381 200 NVLIFDLGGGTFDVSLLTIEE-------GIFEVKATAGDTHLGGEDFDNRMVNHFVQEFK---------RKHKKDISGNP 263 (647)
Q Consensus 200 ~vlV~D~GggT~dvsv~~~~~-------~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~---------~~~~~~~~~~~ 263 (647)
+-|++=+|-+|+.+.+-+-.. .....+....-..-||..=.-.|.+||.+... .+++.. ...
T Consensus 269 ~~l~~I~GTStC~m~~s~~~~~v~GvwGpy~~ai~Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~--~~~ 346 (544)
T COG1069 269 GSLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVLPGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEE--IYE 346 (544)
T ss_pred CeEEEEeccceEEEEecCCceecCccccccccccCcchhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhH--HHH
Confidence 456667788888887654321 11122222222345777777788888876421 011100 011
Q ss_pred HHHHHHHHHHHHHHHHcCCCCcEEEEEccccC------Cce-------eEEeecHHHHHHHHHHHHHHHH---HHHHHHH
Q 006381 264 RALRRLRTSCERAKRTLSSTAQTTIEIDSLYE------GID-------FYSPITRARFEELNMDLFRKCM---EPVEKCL 327 (647)
Q Consensus 264 ~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~------~~d-------~~~~itr~~fe~~~~~~~~~~~---~~i~~~l 327 (647)
....++..-+++.+...+....- +.++.+.. +.+ +++.-+.+.+-.+..-.+.-+. ..|-+++
T Consensus 347 ~~~~~~~~l~~~~~~~~~l~~~l-~~l~~f~GNRsP~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~ 425 (544)
T COG1069 347 SLAQRLELLTEAAAAIPPLASGL-HVLDWFNGNRSPLADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETF 425 (544)
T ss_pred HHHHHHHHHHhhHhccCcccCCc-EecccccCCcCCCCCccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 23334444455555555433221 22222211 111 2233344444444444444443 3344455
Q ss_pred HHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHHHHHHHcC
Q 006381 328 RDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSG 388 (647)
Q Consensus 328 ~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~~~~ 388 (647)
++.+ -.|+.|+.+||-.+.|.+.+.+.+.. +.++..+ ..++++++|+|+.|+.-.+
T Consensus 426 ~~~g---~~Id~l~~sGG~~KN~llmql~aDvt-g~~v~i~-~s~~a~llGsAm~~avAag 481 (544)
T COG1069 426 EDQG---IAIDTLFASGGIRKNPLLMQLYADVT-GRPVVIP-ASDQAVLLGAAMFAAVAAG 481 (544)
T ss_pred HHcC---CeeeEEEecCCcccCHHHHHHHHHhc-CCeEEee-cccchhhhHHHHHHHHHhc
Confidence 5555 45899999999999999999999999 5666555 6788999999999986553
No 77
>PLN02669 xylulokinase
Probab=96.30 E-value=0.013 Score=65.74 Aligned_cols=76 Identities=14% Similarity=0.229 Sum_probs=55.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHHHH
Q 006381 304 TRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQA 383 (647)
Q Consensus 304 tr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a 383 (647)
+|.+ +++-+++.+.-.++..++..+.. ..++.|+++||+|+++.+.+.+.+.| +.+|.+... .++.|+|||+.|
T Consensus 417 ~~~~---~~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVl-g~pV~~~~~-~ea~alGAA~~A 490 (556)
T PLN02669 417 DPPS---EVRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIF-GCDVYTVQR-PDSASLGAALRA 490 (556)
T ss_pred CHHH---HHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHc-CCCeEecCC-CCchHHHHHHHH
Confidence 4544 34455555555555555544332 45789999999999999999999999 677765544 478899999999
Q ss_pred HH
Q 006381 384 AI 385 (647)
Q Consensus 384 ~~ 385 (647)
+.
T Consensus 491 ~~ 492 (556)
T PLN02669 491 AH 492 (556)
T ss_pred HH
Confidence 75
No 78
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=96.24 E-value=0.011 Score=56.24 Aligned_cols=30 Identities=40% Similarity=0.315 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHcCCceeEecChhHHHHhc
Q 006381 157 SQRQATKDAGVIAGLNVMRIINEPTAAAIA 186 (647)
Q Consensus 157 ~qr~~l~~Aa~~AGl~~~~li~Ep~Aaa~~ 186 (647)
...+.+.++.+.|||++..++.+|.|++.+
T Consensus 157 ~~v~n~~~~v~~agl~v~~i~~~~~A~~~a 186 (187)
T smart00842 157 SAIQNLEKCVERAGLEVDGIVLEPLASAEA 186 (187)
T ss_pred HHHHHHHHHHHHcCCchhhEEehhhhhEec
Confidence 457778899999999999999999998754
No 79
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=95.98 E-value=0.095 Score=57.93 Aligned_cols=79 Identities=22% Similarity=0.226 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHcCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChH
Q 006381 158 QRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGE 237 (647)
Q Consensus 158 qr~~l~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~ 237 (647)
....+.++-+..|+++..+=.|-+|--.+.+...... ..+..+|+|+|||+|.+++++-.. + ......++|.-
T Consensus 93 ~~~fl~~i~~~tGl~ievIsG~eEA~l~~~gv~~~l~--~~~~~lviDIGGGStEl~~~~~~~--~---~~~~Sl~lG~v 165 (496)
T PRK11031 93 ADEFLAKAQEILGCPVQVISGEEEARLIYQGVAHTTG--GADQRLVVDIGGASTELVTGTGAQ--A---TSLFSLSMGCV 165 (496)
T ss_pred HHHHHHHHHHHHCCCeEEeCHHHHHHHHHHhhhhccC--CCCCEEEEEecCCeeeEEEecCCc--e---eeeeEEeccch
Confidence 3445556667779987555555555544445444321 234589999999999999885322 2 22223567776
Q ss_pred HHHHHH
Q 006381 238 DFDNRM 243 (647)
Q Consensus 238 ~~d~~l 243 (647)
.+.+.+
T Consensus 166 rl~e~f 171 (496)
T PRK11031 166 TWLERY 171 (496)
T ss_pred HHHHHh
Confidence 655544
No 80
>PRK00047 glpK glycerol kinase; Provisional
Probab=95.75 E-value=0.028 Score=62.39 Aligned_cols=76 Identities=17% Similarity=0.192 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcC-CCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHHHHHHHcC
Q 006381 311 LNMDLFRKCMEPVEKCLRDAK-MDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSG 388 (647)
Q Consensus 311 ~~~~~~~~~~~~i~~~l~~~~-~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~~~~ 388 (647)
++.-+++.+.-.++..++... .....++.|.++||.+++|.+.+.+.+.| +.+|... +..++.|+|||+.|+.-.|
T Consensus 377 l~rAvlEgia~~~r~~~e~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~-~~~e~~a~GaA~~A~~~~G 453 (498)
T PRK00047 377 IIRATLESIAYQTRDVLDAMQADSGIRLKELRVDGGAVANNFLMQFQADIL-GVPVERP-VVAETTALGAAYLAGLAVG 453 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCcccCHHHHHHHHHhh-CCeeEec-CcccchHHHHHHHHhhhcC
Confidence 344444544444444433322 11224789999999999999999999999 6888654 4567889999999986654
No 81
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=95.73 E-value=0.033 Score=61.60 Aligned_cols=51 Identities=33% Similarity=0.563 Sum_probs=44.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHHHHHHHcC
Q 006381 336 SVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSG 388 (647)
Q Consensus 336 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~~~~ 388 (647)
.++.|+++||.++++.+.+.+.+.| +.++... ...++.++|||++|+.-.+
T Consensus 390 ~~~~i~~~GG~s~s~~~~Q~~Adv~-g~pv~~~-~~~e~~a~GaA~~a~~~~g 440 (481)
T TIGR01312 390 PIQSIRLIGGGAKSPAWRQMLADIF-GTPVDVP-EGEEGPALGAAILAAWALG 440 (481)
T ss_pred CcceEEEeccccCCHHHHHHHHHHh-CCceeec-CCCcchHHHHHHHHHHhcC
Confidence 4789999999999999999999999 6777655 4667899999999987654
No 82
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=95.66 E-value=0.028 Score=62.29 Aligned_cols=51 Identities=25% Similarity=0.377 Sum_probs=43.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHHHHHHHcC
Q 006381 336 SVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSG 388 (647)
Q Consensus 336 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~~~~ 388 (647)
.++.|.++||.++++.+.+++.+.| +.++... +..++.|+|||+.|+.-.|
T Consensus 399 ~~~~i~~~GGga~s~~w~Qi~ADv~-g~pv~~~-~~~e~~alGaA~~a~~~~G 449 (493)
T TIGR01311 399 EITKLRVDGGMTNNNLLMQFQADIL-GVPVVRP-KVTETTALGAAYAAGLAVG 449 (493)
T ss_pred CCceEEEecccccCHHHHHHHHHhc-CCeeEec-CCCcchHHHHHHHHHhhcC
Confidence 4789999999999999999999999 6888654 4567889999999986654
No 83
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=95.65 E-value=0.034 Score=61.86 Aligned_cols=80 Identities=21% Similarity=0.275 Sum_probs=54.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHHH
Q 006381 304 TRARFEELNMDLFRKCMEPVEKCLRDAKM-DKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQ 382 (647)
Q Consensus 304 tr~~fe~~~~~~~~~~~~~i~~~l~~~~~-~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~ 382 (647)
++.++ +.-+++.+.-.++..++.... ....++.|.++||.++++.+.+.+.+.| +.++.+.. ..++.++|||+.
T Consensus 376 ~~~~i---~rAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GG~a~s~~w~Qi~Adv~-g~pV~~~~-~~e~~alGaAl~ 450 (504)
T PTZ00294 376 TRAHI---VRAALEAIALQTNDVIESMEKDAGIELNSLRVDGGLTKNKLLMQFQADIL-GKDIVVPE-MAETTALGAALL 450 (504)
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHHhhCCCcceEEEecccccCHHHHHHHHHHh-CCceEecC-cccchHHHHHHH
Confidence 45544 344444444444444333211 1123789999999999999999999999 77886554 556889999999
Q ss_pred HHHHcC
Q 006381 383 AAILSG 388 (647)
Q Consensus 383 a~~~~~ 388 (647)
|+.-.|
T Consensus 451 aa~a~G 456 (504)
T PTZ00294 451 AGLAVG 456 (504)
T ss_pred HHhhcC
Confidence 986654
No 84
>PRK04123 ribulokinase; Provisional
Probab=95.65 E-value=0.029 Score=63.07 Aligned_cols=81 Identities=20% Similarity=0.268 Sum_probs=55.1
Q ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCC-CCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHH
Q 006381 303 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGS-TRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAV 381 (647)
Q Consensus 303 itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~-s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~ 381 (647)
-+|.++ +.-+++.+.-.++..++........++.|.++||. ++++.+.+.+.+.| +.+|.+. .+.|+.|+|||+
T Consensus 408 ~~~~~l---~RAvlEgia~~~~~~~e~l~~~g~~~~~i~~~GGg~s~s~~w~Qi~ADv~-g~pV~~~-~~~e~~alGaA~ 482 (548)
T PRK04123 408 TDAPDI---YRALIEATAFGTRAIMECFEDQGVPVEEVIAAGGIARKNPVLMQIYADVL-NRPIQVV-ASDQCPALGAAI 482 (548)
T ss_pred CCHHHH---HHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCcccCHHHHHHHHHhc-CCceEec-CccccchHHHHH
Confidence 355544 44444444433333333222112347899999999 99999999999999 6777544 456788999999
Q ss_pred HHHHHcC
Q 006381 382 QAAILSG 388 (647)
Q Consensus 382 ~a~~~~~ 388 (647)
.|+.-.+
T Consensus 483 lA~~~~G 489 (548)
T PRK04123 483 FAAVAAG 489 (548)
T ss_pred HHHHHhc
Confidence 9986554
No 85
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=95.58 E-value=0.036 Score=62.13 Aligned_cols=82 Identities=21% Similarity=0.282 Sum_probs=55.4
Q ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCC-CCcHHHHHHHHhhhCCccccCCCCchhhHHhHHH
Q 006381 302 PITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGS-TRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAA 380 (647)
Q Consensus 302 ~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~-s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa 380 (647)
.-+|.+|-..+-+-+--....+.+.|++.+. .++.|+++||. ++++.+.+.+.+.| +.+|.+..+ .++.|+|||
T Consensus 404 ~~~~~~~~RAvlEgia~~~~~~l~~l~~~g~---~~~~i~~~GGg~a~s~~w~Qi~Adv~-g~pV~~~~~-~e~~a~GaA 478 (536)
T TIGR01234 404 ATDAPLLYRALIEATAFGTRMIMETFTDSGV---PVEELMAAGGIARKNPVIMQIYADVT-NRPLQIVAS-DQAPALGAA 478 (536)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CcceEEEeCCccccCHHHHHHHHHhh-CCeeEeccC-CcchhHHHH
Confidence 3456654433322222222223334444333 47899999999 99999999999999 688866655 468899999
Q ss_pred HHHHHHcC
Q 006381 381 VQAAILSG 388 (647)
Q Consensus 381 ~~a~~~~~ 388 (647)
+.|+.-.+
T Consensus 479 ~lA~~~~G 486 (536)
T TIGR01234 479 IFAAVAAG 486 (536)
T ss_pred HHHHHHcC
Confidence 99987654
No 86
>PRK10854 exopolyphosphatase; Provisional
Probab=95.53 E-value=0.12 Score=57.29 Aligned_cols=58 Identities=19% Similarity=0.270 Sum_probs=36.9
Q ss_pred HHHHHHHHHHcCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEE
Q 006381 159 RQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTI 218 (647)
Q Consensus 159 r~~l~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~ 218 (647)
...+.++-+..|+++..+=.+-+|--.+.+...... .....+|+|+|||+|.+++++-
T Consensus 99 ~~fl~~i~~~tGl~i~vIsG~EEA~l~~~gv~~~l~--~~~~~lvvDIGGGStEl~~~~~ 156 (513)
T PRK10854 99 TDFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQP--EKGRKLVIDIGGGSTELVIGEN 156 (513)
T ss_pred HHHHHHHHHHHCCCeEEeCHHHHHHHHHhhhhcccC--CCCCeEEEEeCCCeEEEEEecC
Confidence 344455566679987444444455444445443331 2356899999999999999853
No 87
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=95.36 E-value=0.18 Score=50.84 Aligned_cols=47 Identities=15% Similarity=0.089 Sum_probs=39.4
Q ss_pred CCCCeEEEEcC-CCCcHHHHHHHHhhh--CCccccCCCCchhhHHhHHHH
Q 006381 335 SSVHDVVLVGG-STRIPKVQQLLQDFF--NGKELCKSINPDEAVAYGAAV 381 (647)
Q Consensus 335 ~~i~~ViLvGG-~s~~p~v~~~l~~~f--~~~~v~~~~~p~~ava~GAa~ 381 (647)
..+..|+++|| .+..|.+++.+...+ .+.++..+.|+...+|+||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 34789999999 678999999998776 245677888999999999986
No 88
>PLN02295 glycerol kinase
Probab=95.31 E-value=0.047 Score=60.83 Aligned_cols=51 Identities=25% Similarity=0.351 Sum_probs=43.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHHHHHHHcC
Q 006381 336 SVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSG 388 (647)
Q Consensus 336 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~~~~ 388 (647)
.++.|.++||++++|.+.+.+.+.| +.++.+. +..++.|+|||+.|+.-.+
T Consensus 412 ~~~~i~~~GGga~s~~w~Qi~ADv~-g~pV~~~-~~~e~~alGaA~~A~~~~G 462 (512)
T PLN02295 412 GLFLLRVDGGATANNLLMQIQADLL-GSPVVRP-ADIETTALGAAYAAGLAVG 462 (512)
T ss_pred CcceEEEeccchhCHHHHHHHHHhc-CCceEec-CccccHHHHHHHHHHhhcC
Confidence 4788999999999999999999999 6888544 4567889999999986654
No 89
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=95.30 E-value=0.065 Score=57.96 Aligned_cols=74 Identities=23% Similarity=0.343 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCC-CCCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHHHHHHHcCC
Q 006381 314 DLFRKCMEPVEKCLRDAKMDK-SSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGE 389 (647)
Q Consensus 314 ~~~~~~~~~i~~~l~~~~~~~-~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~~~~~ 389 (647)
-.++.+.-.++..|+....+. ..|+.+.+.||.|+.|.+.+.+.+.+ +.++.++.+++. ++.|||+.|+..++.
T Consensus 391 A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~Q~~ADi~-g~pv~~p~~~e~-~~~GaA~l~~~a~~~ 465 (516)
T KOG2517|consen 391 AALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLMQLQADIL-GLPVVRPQDVEA-VALGAAMLAGAASGK 465 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHHHHHHHHHh-CCccccccchhH-HHHHHHHHHHhhcCC
Confidence 334444433333333332222 46888999999999999999999999 689988888877 999999999987754
No 90
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=95.21 E-value=0.051 Score=59.57 Aligned_cols=50 Identities=22% Similarity=0.299 Sum_probs=42.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHHHHHHHcC
Q 006381 336 SVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSG 388 (647)
Q Consensus 336 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~~~~ 388 (647)
.++.|.++||+++++++.+.+.+.+ +.+|... +.++.|+|||+.|+.-.+
T Consensus 387 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~--~~e~~a~GaA~~a~~~~G 436 (454)
T TIGR02627 387 PISQLHIVGGGSQNAFLNQLCADAC-GIRVIAG--PVEASTLGNIGVQLMALD 436 (454)
T ss_pred CcCEEEEECChhhhHHHHHHHHHHh-CCceEcC--CchHHHHHHHHHHHHhcC
Confidence 4789999999999999999999999 6888543 367899999999987654
No 91
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=95.02 E-value=0.064 Score=59.94 Aligned_cols=51 Identities=27% Similarity=0.369 Sum_probs=43.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHHHHHHHcC
Q 006381 336 SVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSG 388 (647)
Q Consensus 336 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~~~~ 388 (647)
.++.|.++||.++++.+.+.+.+.+ +.++.+..+ .++.++|||+.|+.-.|
T Consensus 409 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~-~e~~alGaA~lA~~~~G 459 (520)
T PRK10939 409 FPSSLVFAGGGSKGKLWSQILADVT-GLPVKVPVV-KEATALGCAIAAGVGAG 459 (520)
T ss_pred CCcEEEEeCCcccCHHHHHHHHHhc-CCeeEEecc-cCchHHHHHHHHHHHhC
Confidence 4789999999999999999999999 788866554 46789999999986654
No 92
>PRK09698 D-allose kinase; Provisional
Probab=94.96 E-value=4.2 Score=41.78 Aligned_cols=49 Identities=20% Similarity=0.289 Sum_probs=31.7
Q ss_pred CCCeEEEEcCCCCc-----HHHHHHHHhhhC------CccccCCCCchhhHHhHHHHHHH
Q 006381 336 SVHDVVLVGGSTRI-----PKVQQLLQDFFN------GKELCKSINPDEAVAYGAAVQAA 384 (647)
Q Consensus 336 ~i~~ViLvGG~s~~-----p~v~~~l~~~f~------~~~v~~~~~p~~ava~GAa~~a~ 384 (647)
+++.|+|-||.++. +.+++.+++... ..++......+.+.++|||+.+.
T Consensus 236 dP~~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~~ 295 (302)
T PRK09698 236 DPDAIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGAAILAH 295 (302)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhHHHHHH
Confidence 46888888887764 345566665431 12344455567788999998864
No 93
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=94.84 E-value=0.075 Score=58.50 Aligned_cols=50 Identities=20% Similarity=0.203 Sum_probs=42.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHHHHHHHcC
Q 006381 336 SVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSG 388 (647)
Q Consensus 336 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~~~~ 388 (647)
.++.|.++||+++++.+.+.+.+.+ +.+|.... .++.++|||+.|+.-.+
T Consensus 375 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~--~ea~alGaa~~a~~a~G 424 (471)
T PRK10640 375 PFSQLHIVGGGCQNALLNQLCADAC-GIRVIAGP--VEASTLGNIGIQLMTLD 424 (471)
T ss_pred CcceEEEECChhhhHHHHHHHHHHh-CCCeeeCC--hhHHHHHHHHHHHHHcC
Confidence 4789999999999999999999999 68885432 37899999999987654
No 94
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=94.75 E-value=0.11 Score=54.41 Aligned_cols=56 Identities=21% Similarity=0.393 Sum_probs=47.5
Q ss_pred HHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHHHHHH
Q 006381 328 RDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAI 385 (647)
Q Consensus 328 ~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~ 385 (647)
+..+........|+.+||.|+...|-+.|.+.| +.++... +..+++|+|+|+.|+.
T Consensus 434 ~~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf-~apVy~~-~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 434 EPLGFKSNPPTRILVTGGASRNEAILQIIADVF-GAPVYTI-EGPNSAALGGAYRAAY 489 (545)
T ss_pred ccccCCCCCCceEEEecCccccHHHHHHHHHHh-CCCeEee-cCCchhhHHHHHHHHH
Confidence 445666667899999999999999999999999 6777654 7888999999999874
No 95
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=94.65 E-value=0.069 Score=46.77 Aligned_cols=48 Identities=13% Similarity=0.297 Sum_probs=27.8
Q ss_pred EEEEEeCCCceEEEEEEEe-CCeEEEEEeeCCCC--CChHHHH--HHHHHHHH
Q 006381 201 VLIFDLGGGTFDVSLLTIE-EGIFEVKATAGDTH--LGGEDFD--NRMVNHFV 248 (647)
Q Consensus 201 vlV~D~GggT~dvsv~~~~-~~~~~v~~~~~~~~--lGG~~~d--~~l~~~l~ 248 (647)
++++|+|++++.+.+++.. .+.++++....... +=+..+. +.+.+-+.
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~ 53 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVPSKGIKGGHITDIEDISKAIK 53 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES----------HHHHH--HHHHHHHT
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEecccccccCCCEEEEHHHHHHHHH
Confidence 5799999999999999873 34445443331111 1166666 66665553
No 96
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=94.62 E-value=0.37 Score=49.66 Aligned_cols=73 Identities=23% Similarity=0.341 Sum_probs=40.9
Q ss_pred HHHHHHHHcCCceeEecChhHHHHhcc-cccccccCCCCeeEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHH
Q 006381 161 ATKDAGVIAGLNVMRIINEPTAAAIAY-GLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDF 239 (647)
Q Consensus 161 ~l~~Aa~~AGl~~~~li~Ep~Aaa~~y-~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~ 239 (647)
.+...-+..|++. ++++..+=|.+.| +..... .....+++|+|||++.++.+.-.. + ......++|...+
T Consensus 90 ~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~~---~~~~~~v~DiGGGSte~~~~~~~~--~---~~~~Sl~lG~vrl 160 (300)
T TIGR03706 90 FLREAEAILGLPI-EVISGEEEARLIYLGVAHTL---PIADGLVVDIGGGSTELILGKDFE--P---GEGVSLPLGCVRL 160 (300)
T ss_pred HHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhCC---CCCCcEEEEecCCeEEEEEecCCC--E---eEEEEEccceEEh
Confidence 3334445679876 5666665555544 332222 112249999999999999875322 1 1222345665555
Q ss_pred HHH
Q 006381 240 DNR 242 (647)
Q Consensus 240 d~~ 242 (647)
.+.
T Consensus 161 ~e~ 163 (300)
T TIGR03706 161 TEQ 163 (300)
T ss_pred HHh
Confidence 444
No 97
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=93.78 E-value=0.45 Score=50.96 Aligned_cols=117 Identities=13% Similarity=0.065 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCC----CCcEEEEeCCCCCHHHHHHHHHH-HHHcCCceeEecChhHHHHhcccccccccCC
Q 006381 122 EISSMVLIKMREIAEAYLGST----VKNAVVTVPAYFNDSQRQATKDA-GVIAGLNVMRIINEPTAAAIAYGLDKKATSV 196 (647)
Q Consensus 122 ev~a~~L~~l~~~a~~~~~~~----~~~~ViTVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~ 196 (647)
++...+|.|+.. ++|.. ..-+++|-+..=....|+.|.+- .+.-|++.+.+=-...=+ +.++... .
T Consensus 95 el~E~ilDY~F~----~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS---~~hN~~~--~ 165 (645)
T KOG0681|consen 95 ELMEQILDYIFG----KLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFS---FYHNYGK--S 165 (645)
T ss_pred HHHHHHHHHHHH----hcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHH---HhhccCc--c
Confidence 444445555443 34432 23578888888778888888764 567788776542221111 1111111 2
Q ss_pred CCeeEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHHHHHHHHHHHHH
Q 006381 197 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQE 250 (647)
Q Consensus 197 ~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~ 250 (647)
.+..-||+++|..+|-|-.+- +|... +....-.++||.....-|.+++..+
T Consensus 166 ~~~~~liis~g~~~T~vipvl--dG~~i-l~~~kRiN~GG~qa~dYL~~Lmq~K 216 (645)
T KOG0681|consen 166 SNKSGLIISMGHSATHVIPVL--DGRLI-LKDVKRINWGGYQAGDYLSRLMQLK 216 (645)
T ss_pred cCcceEEEecCCCcceeEEEe--cCchh-hhcceeeccCcchHHHHHHHHHhcc
Confidence 234689999999999887663 33322 2333447899988766666655443
No 98
>PRK09557 fructokinase; Reviewed
Probab=93.57 E-value=9.9 Score=39.01 Aligned_cols=48 Identities=21% Similarity=0.270 Sum_probs=30.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHhhhC--------CccccCCCCchhhHHhHHHHHH
Q 006381 336 SVHDVVLVGGSTRIPKVQQLLQDFFN--------GKELCKSINPDEAVAYGAAVQA 383 (647)
Q Consensus 336 ~i~~ViLvGG~s~~p~v~~~l~~~f~--------~~~v~~~~~p~~ava~GAa~~a 383 (647)
+++.|+|-||.++.+.+...|++.+. ..++....-.+.+.++|||+..
T Consensus 244 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 244 DPDVIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAAWLW 299 (301)
T ss_pred CCCEEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhhHhh
Confidence 36788888888877766655555441 1123333345668899998753
No 99
>PRK09604 UGMP family protein; Validated
Probab=93.27 E-value=9.5 Score=39.86 Aligned_cols=52 Identities=21% Similarity=0.266 Sum_probs=37.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHhhhC--CccccCCC---CchhhHHhHHHHHHHHHc
Q 006381 336 SVHDVVLVGGSTRIPKVQQLLQDFFN--GKELCKSI---NPDEAVAYGAAVQAAILS 387 (647)
Q Consensus 336 ~i~~ViLvGG~s~~p~v~~~l~~~f~--~~~v~~~~---~p~~ava~GAa~~a~~~~ 387 (647)
.++.|+|.||.+...++++.|.+.+. +.++..+. -.|.++++|+|=+-....
T Consensus 254 ~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~~~~~ 310 (332)
T PRK09604 254 GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYERLKA 310 (332)
T ss_pred CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHHHHHc
Confidence 46789999999999999999998873 23333332 357788888885544343
No 100
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=93.00 E-value=0.86 Score=45.96 Aligned_cols=89 Identities=25% Similarity=0.223 Sum_probs=50.5
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCceeEe---cChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCC
Q 006381 145 NAVVTVPAYFNDSQRQATKDAGVIAGLNVMRI---INEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEG 221 (647)
Q Consensus 145 ~~ViTVPa~~~~~qr~~l~~Aa~~AGl~~~~l---i~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~ 221 (647)
-++||=-.-=...+|..+..-...||==++.- -.|+.-|.-..+...- ..++..+++=+|+||||+..|++.-.+
T Consensus 89 AvIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~-Seqr~t~v~NlDIGGGTtN~slFD~Gk- 166 (473)
T COG4819 89 AVIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTL-SEQRLTRVLNLDIGGGTTNYSLFDAGK- 166 (473)
T ss_pred cEEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccccch-hhhhceEEEEEeccCCccceeeecccc-
Confidence 35777666666777777766666666322221 1244444332221111 113456799999999999999985443
Q ss_pred eEEEEEeeCCCCCChHHH
Q 006381 222 IFEVKATAGDTHLGGEDF 239 (647)
Q Consensus 222 ~~~v~~~~~~~~lGG~~~ 239 (647)
+..+. -..+||+-+
T Consensus 167 ---v~dTa-CLdiGGRLi 180 (473)
T COG4819 167 ---VSDTA-CLDIGGRLI 180 (473)
T ss_pred ---cccce-eeecCcEEE
Confidence 22222 256777643
No 101
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=92.81 E-value=6.5 Score=40.70 Aligned_cols=93 Identities=18% Similarity=0.287 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHH--hCCCCCcEEEEeCCCCCHHH------------HHHHHHHH-HHcCCceeEecChhHHHH
Q 006381 120 AEEISSMVLIKMREIAEAY--LGSTVKNAVVTVPAYFNDSQ------------RQATKDAG-VIAGLNVMRIINEPTAAA 184 (647)
Q Consensus 120 ~~ev~a~~L~~l~~~a~~~--~~~~~~~~ViTVPa~~~~~q------------r~~l~~Aa-~~AGl~~~~li~Ep~Aaa 184 (647)
+++++..+.+.+.+..+.. ...++..+.|++|...+... .-.+++.. +..|++ +.+.|+..|+|
T Consensus 33 ~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~p-v~v~NDa~~~a 111 (318)
T TIGR00744 33 PETIVDAIASAVDSFIQHIAKVGHEIVAIGIGAPGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLP-VVVENDANAAA 111 (318)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccceEEEEEeccccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCC-EEEechHHHHH
Confidence 4455555555554444332 11245567788887553211 11233322 344765 67999999998
Q ss_pred hcccccccccCCCCeeEEEEEeCCCceEEEEE
Q 006381 185 IAYGLDKKATSVGEKNVLIFDLGGGTFDVSLL 216 (647)
Q Consensus 185 ~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~ 216 (647)
++-.+.... ...++++++.+|.|- -.+++
T Consensus 112 laE~~~g~~--~~~~~~~~v~igtGi-G~giv 140 (318)
T TIGR00744 112 LGEYKKGAG--KGARDVICITLGTGL-GGGII 140 (318)
T ss_pred HHHHHhccc--CCCCcEEEEEeCCcc-EEEEE
Confidence 865432221 234678888998875 45544
No 102
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=92.40 E-value=0.13 Score=54.97 Aligned_cols=66 Identities=23% Similarity=0.362 Sum_probs=49.3
Q ss_pred HHHHHHHHHHcCCCCCC--CCeEEEEcCCCCcHHHHHHHHhhhC-------CccccCCCCchhhHHhHHHHHHHH
Q 006381 320 MEPVEKCLRDAKMDKSS--VHDVVLVGGSTRIPKVQQLLQDFFN-------GKELCKSINPDEAVAYGAAVQAAI 385 (647)
Q Consensus 320 ~~~i~~~l~~~~~~~~~--i~~ViLvGG~s~~p~v~~~l~~~f~-------~~~v~~~~~p~~ava~GAa~~a~~ 385 (647)
.+.+...|.....+... ++.|+|+||+|.+|.+.++|.+.+- ...|....||-..+=+||+.+|+.
T Consensus 540 ~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 540 AEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred HHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 34444455543222222 8899999999999999999998772 245677889999999999999874
No 103
>PTZ00288 glucokinase 1; Provisional
Probab=92.21 E-value=8.3 Score=41.31 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=18.3
Q ss_pred CCCEEEEecCccceEEEEEEC
Q 006381 6 EGPAIGIDLGTTYSCVGVWQH 26 (647)
Q Consensus 6 ~~~vvGID~GTt~s~va~~~~ 26 (647)
..+++|+|.|.||+++++++.
T Consensus 25 ~~~~~~~DiGgt~~R~~~~~~ 45 (405)
T PTZ00288 25 GPIFVGCDVGGTNARVGFARE 45 (405)
T ss_pred CCeEEEEEecCCceEEEEEec
Confidence 357999999999999999854
No 104
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=91.18 E-value=0.11 Score=45.57 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=16.9
Q ss_pred EEEEecCccceEEEEEECCe
Q 006381 9 AIGIDLGTTYSCVGVWQHDR 28 (647)
Q Consensus 9 vvGID~GTt~s~va~~~~g~ 28 (647)
|++||+|++.+++++++.+.
T Consensus 1 i~~iDiGs~~~~~~i~~~~~ 20 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGS 20 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTE
T ss_pred CEEEEcCCCcEEEEEEEeCC
Confidence 68999999999999998764
No 105
>PRK14878 UGMP family protein; Provisional
Probab=91.17 E-value=21 Score=37.12 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHhhh
Q 006381 337 VHDVVLVGGSTRIPKVQQLLQDFF 360 (647)
Q Consensus 337 i~~ViLvGG~s~~p~v~~~l~~~f 360 (647)
+..|+|+||.+...++++.+.+.+
T Consensus 242 ~~~vvlsGGVa~N~~L~~~l~~~~ 265 (323)
T PRK14878 242 KKEVLLVGGVAANRRLREKLEIMA 265 (323)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHH
Confidence 678999999999999999999876
No 106
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=90.11 E-value=20 Score=41.16 Aligned_cols=73 Identities=7% Similarity=0.040 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCc--HHHHH-HHHhhhCC----------ccccCCCCchhhHHhH
Q 006381 312 NMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRI--PKVQQ-LLQDFFNG----------KELCKSINPDEAVAYG 378 (647)
Q Consensus 312 ~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~--p~v~~-~l~~~f~~----------~~v~~~~~p~~ava~G 378 (647)
+...++.+...+-..+...-....+++.|+|.||-+.- +++.+ .+.+.|.. .++....+ +.+.-.|
T Consensus 245 A~~~~~~~~~~lg~~~~nl~~~~~~p~~vvigGGIs~~~~~~l~~~~f~~~f~~kg~~~~~~~~ipv~~i~~-~~~~l~G 323 (638)
T PRK14101 245 ALEAVECFCAILGTFAGNLALTLGALGGIYIGGGVVPKLGELFTRSSFRARFEAKGRFEAYLANIPTYLITA-EYPAFLG 323 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEeCcHHHHHHHHcChHHHHHHHHhCCChHHHHhcCCEEEEeC-CChhHHH
Confidence 44555555555555554433333346789999998733 55553 56666622 23433333 3456688
Q ss_pred HHHHHHH
Q 006381 379 AAVQAAI 385 (647)
Q Consensus 379 Aa~~a~~ 385 (647)
||.++..
T Consensus 324 aa~~~~~ 330 (638)
T PRK14101 324 VSAILAE 330 (638)
T ss_pred HHHHHHH
Confidence 8665543
No 107
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=89.75 E-value=0.51 Score=48.23 Aligned_cols=75 Identities=23% Similarity=0.318 Sum_probs=41.9
Q ss_pred HHHHHHHcCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHHHH
Q 006381 162 TKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDN 241 (647)
Q Consensus 162 l~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~ 241 (647)
+.+.-+..|+++..+=.|-+|...+.+..... ......+|+|+|||+|.++.++- +.+ ......++|.-.+.+
T Consensus 77 ~~~i~~~tGi~i~iIsgeeEa~l~~~gv~~~l--~~~~~~lviDIGGGStEl~~~~~--~~~---~~~~Sl~lG~vrl~e 149 (285)
T PF02541_consen 77 LDRIKKETGIDIEIISGEEEARLSFLGVLSSL--PPDKNGLVIDIGGGSTELILFEN--GKV---VFSQSLPLGAVRLTE 149 (285)
T ss_dssp HHHHHHHHSS-EEEE-HHHHHHHHHHHHHHHS--TTTSSEEEEEEESSEEEEEEEET--TEE---EEEEEES--HHHHHH
T ss_pred HHHHHHHhCCceEEecHHHHHHHHHHHHHhhc--cccCCEEEEEECCCceEEEEEEC--Cee---eEeeeeehHHHHHHH
Confidence 44445667987654444444443333332222 24567899999999999998853 322 222235788877766
Q ss_pred HH
Q 006381 242 RM 243 (647)
Q Consensus 242 ~l 243 (647)
.+
T Consensus 150 ~~ 151 (285)
T PF02541_consen 150 RF 151 (285)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 108
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=89.38 E-value=3 Score=45.72 Aligned_cols=95 Identities=21% Similarity=0.212 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCC---HHHHHHHHHHHHHcCCceeEecChhHHHHhcccccccccCCC
Q 006381 121 EEISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFN---DSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVG 197 (647)
Q Consensus 121 ~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~~~---~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~ 197 (647)
++.....+.-|+..++...+..+..+ ..|=.... ...-+.+..+-+..|+++-.+=-|-+|--.+++.-.... .
T Consensus 51 ~eai~R~~~aL~~f~e~~~~~~~~~v-~~vATsA~R~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~--~ 127 (492)
T COG0248 51 EEAIERALSALKRFAELLDGFGAEEV-RVVATSALRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLP--R 127 (492)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCEE-EEehhHHHHcCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCC--C
Confidence 44455555666666555545555553 22221111 223455677888889987666666666655555544442 1
Q ss_pred CeeEEEEEeCCCceEEEEEEE
Q 006381 198 EKNVLIFDLGGGTFDVSLLTI 218 (647)
Q Consensus 198 ~~~vlV~D~GggT~dvsv~~~ 218 (647)
....+|+|+|||+|.+++..-
T Consensus 128 ~~~~lv~DIGGGStEl~~g~~ 148 (492)
T COG0248 128 KGDGLVIDIGGGSTELVLGDN 148 (492)
T ss_pred CCCEEEEEecCCeEEEEEecC
Confidence 667999999999999999863
No 109
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=89.22 E-value=1.3 Score=46.50 Aligned_cols=76 Identities=22% Similarity=0.232 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCccccC----CCCchhhHHhHHHHHH
Q 006381 308 FEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCK----SINPDEAVAYGAAVQA 383 (647)
Q Consensus 308 fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~----~~~p~~ava~GAa~~a 383 (647)
-+++...+.+-+...|.+.++..... ++.|+++||+++.|.+.+.|++.+++.++.. .++|+.-=|.+-|++|
T Consensus 259 ~~D~~aTlt~~TA~sI~~~i~~~~~~---~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aFA~La 335 (364)
T PF03702_consen 259 PEDILATLTEFTAQSIADAIRRFPPQ---PDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAFAWLA 335 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-TT----EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCC---CceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHHHHHH
Confidence 44555566666666677777765432 7899999999999999999999997655432 2345544455566666
Q ss_pred HHH
Q 006381 384 AIL 386 (647)
Q Consensus 384 ~~~ 386 (647)
...
T Consensus 336 ~~~ 338 (364)
T PF03702_consen 336 YRR 338 (364)
T ss_dssp HHH
T ss_pred HHH
Confidence 644
No 110
>PLN02666 5-oxoprolinase
Probab=89.09 E-value=5.2 Score=49.05 Aligned_cols=77 Identities=12% Similarity=0.144 Sum_probs=49.4
Q ss_pred ecHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHH
Q 006381 303 ITRARFEELNMDLFR-KCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAV 381 (647)
Q Consensus 303 itr~~fe~~~~~~~~-~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~ 381 (647)
++-++...-+..+.+ .+...|+.....-+.++.+ -.++..||++ |..--.|.+.++=..+..+.+|.-..|+|+++
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~-~~l~afGGag--p~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ 530 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYETAN-HALACFGGAG--PQHACAIARALGMSEVFVHRYCGILSAYGMGL 530 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-ceEEEecCcH--HHHHHHHHHHcCCCEEEeCCCccHHHHHHHHh
Confidence 444555444444433 3445566665566666554 2455566655 67888888888433488888999999999986
Q ss_pred H
Q 006381 382 Q 382 (647)
Q Consensus 382 ~ 382 (647)
-
T Consensus 531 a 531 (1275)
T PLN02666 531 A 531 (1275)
T ss_pred h
Confidence 3
No 111
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=89.04 E-value=1.4 Score=47.11 Aligned_cols=81 Identities=21% Similarity=0.263 Sum_probs=56.7
Q ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHH
Q 006381 303 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDK-SSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAV 381 (647)
Q Consensus 303 itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~-~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~ 381 (647)
.++++| ++..++.+.-...++++....+. ..++.+-+=||.++..++.+...+.+ +.+|.++.+ .|..|+|||+
T Consensus 371 t~~~hi---~RA~LEsiayQ~~dv~~aM~~d~~~~~~~LrvDGG~s~n~~lmQfqADil-g~~V~Rp~~-~EtTAlGaA~ 445 (499)
T COG0554 371 TTKAHI---ARATLESIAYQTRDVLEAMEKDSGIKLTRLRVDGGASRNNFLMQFQADIL-GVPVERPVV-LETTALGAAY 445 (499)
T ss_pred CCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEcCccccchhHHHHHHHHh-CCeeecccc-chhhHHHHHH
Confidence 344444 44455555544444444322111 15788889999999999999999999 688877654 6788999999
Q ss_pred HHHHHcC
Q 006381 382 QAAILSG 388 (647)
Q Consensus 382 ~a~~~~~ 388 (647)
.|..-.+
T Consensus 446 lAGla~G 452 (499)
T COG0554 446 LAGLAVG 452 (499)
T ss_pred HHhhhhC
Confidence 9987665
No 112
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=88.62 E-value=1.3 Score=43.13 Aligned_cols=73 Identities=19% Similarity=0.240 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEEeCCCCCHH-HHHHHHHHHHHcCCceeEecChhHHHHhcccccccccCCCCeeEEEEE
Q 006381 127 VLIKMREIAEAYLGSTVKNAVVTVPAYFNDS-QRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFD 205 (647)
Q Consensus 127 ~L~~l~~~a~~~~~~~~~~~ViTVPa~~~~~-qr~~l~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D 205 (647)
-..+|.+..+..++.++ .++++-..|... ..+..++.| .|+. .|.|- +... ...+..+++|
T Consensus 75 GVe~Ii~~v~~Af~~pv--~~v~~~G~~~ssEa~~~~~~vA-AaNW---------~Ata~-~~~e-----~~~dsci~VD 136 (330)
T COG1548 75 GVEDIIDTVEKAFNCPV--YVVDVNGNFLSSEALKNPREVA-AANW---------VATAR-FLAE-----EIKDSCILVD 136 (330)
T ss_pred HHHHHHHHHHHhcCCce--EEEeccCcCcChhHhcCHHHHH-Hhhh---------HHHHH-HHHH-----hcCCceEEEe
Confidence 34556666777666664 789999888764 222233321 1111 01110 1000 1345689999
Q ss_pred eCCCceEEEEEE
Q 006381 206 LGGGTFDVSLLT 217 (647)
Q Consensus 206 ~GggT~dvsv~~ 217 (647)
+|+.|+|+.-+.
T Consensus 137 ~GSTTtDIIPi~ 148 (330)
T COG1548 137 MGSTTTDIIPIK 148 (330)
T ss_pred cCCcccceEeec
Confidence 999999998765
No 113
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=85.30 E-value=0.56 Score=48.01 Aligned_cols=65 Identities=18% Similarity=0.159 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhhHHhHHHH
Q 006381 314 DLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAV 381 (647)
Q Consensus 314 ~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~ 381 (647)
-..+++.+.|+......+..+.+ -.++.+||.+ |++-..|.+.++-..+..+..+.-+.|.||++
T Consensus 219 ~~~~~m~~~i~~~~~~~g~~~~~-~~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~ 283 (290)
T PF01968_consen 219 IANENMADAIREVSVERGYDPRD-FPLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAV 283 (290)
T ss_dssp HHHHHHHHHHHHHHHHHT--EEE-E-------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhhCCCccc-cccccccccc--cccccccccccccccccccccccccccccccc
Confidence 34444455555554444544433 2355566666 66788888888433455666678899999986
No 114
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=84.10 E-value=24 Score=37.22 Aligned_cols=82 Identities=17% Similarity=0.121 Sum_probs=56.0
Q ss_pred EeecHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCe-EEEEcCCCCcHHHHHHHHhhhCCcccc-CCCCchhhHHh
Q 006381 301 SPITRARFEELNMDLFRKCM-EPVEKCLRDAKMDKSSVHD-VVLVGGSTRIPKVQQLLQDFFNGKELC-KSINPDEAVAY 377 (647)
Q Consensus 301 ~~itr~~fe~~~~~~~~~~~-~~i~~~l~~~~~~~~~i~~-ViLvGG~s~~p~v~~~l~~~f~~~~v~-~~~~p~~ava~ 377 (647)
..-.+.++-..++..+++++ ..++.++++.+ ++. |.|.||....-..-..|.+..+-.++. .+.-.|.-+|+
T Consensus 131 ~~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~ai 205 (360)
T PF02543_consen 131 LTQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAI 205 (360)
T ss_dssp EESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHH
Confidence 34567777777777777665 45566666666 445 999999999988888888874323443 44456788999
Q ss_pred HHHHHHHHHc
Q 006381 378 GAAVQAAILS 387 (647)
Q Consensus 378 GAa~~a~~~~ 387 (647)
|||+++....
T Consensus 206 GaA~~~~~~~ 215 (360)
T PF02543_consen 206 GAALYAWHEL 215 (360)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998654
No 115
>PLN02920 pantothenate kinase 1
Probab=83.85 E-value=8 Score=40.74 Aligned_cols=49 Identities=12% Similarity=-0.014 Sum_probs=36.7
Q ss_pred CCCCeEEEEcCCCCcH-HHHHHHHh---hh--CCccccCCCCchhhHHhHHHHHH
Q 006381 335 SSVHDVVLVGGSTRIP-KVQQLLQD---FF--NGKELCKSINPDEAVAYGAAVQA 383 (647)
Q Consensus 335 ~~i~~ViLvGG~s~~p-~v~~~l~~---~f--~~~~v~~~~~p~~ava~GAa~~a 383 (647)
..++.|+++|.+.|.+ ..++.|.- ++ ++.+.....+....-|+||.+..
T Consensus 296 ~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~ 350 (398)
T PLN02920 296 FGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSY 350 (398)
T ss_pred cCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhc
Confidence 4589999999999998 66764433 22 34566677788899999998753
No 116
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=83.41 E-value=62 Score=33.86 Aligned_cols=39 Identities=21% Similarity=0.395 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhh
Q 006381 317 RKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFF 360 (647)
Q Consensus 317 ~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f 360 (647)
+.+.+.+.++++.. .++.|+++||-+...+||++|++..
T Consensus 249 ~~L~~k~~~a~~~~-----~~~~lvv~GGVAaN~~LR~~l~~~~ 287 (345)
T PTZ00340 249 AMLVEVTERAMSHC-----GSNEVLIVGGVGCNLRLQEMMQQMA 287 (345)
T ss_pred HHHHHHHHHHHHHh-----CCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 33444455555543 3678999999999999999999987
No 117
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=82.82 E-value=7.1 Score=41.07 Aligned_cols=73 Identities=18% Similarity=0.293 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCccccC----CCCchhhHHhHHHHHHHH
Q 006381 310 ELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCK----SINPDEAVAYGAAVQAAI 385 (647)
Q Consensus 310 ~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~----~~~p~~ava~GAa~~a~~ 385 (647)
+++..+..-+...|.+.+.... ..++.|+++||+++.|+|.++|++.++ .++.. ..+++.-=|..-|++|..
T Consensus 263 D~~aTlt~~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~-~~v~~~~~~G~~~da~EA~aFA~La~~ 338 (365)
T PRK09585 263 DVQATLTELTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLP-TEVATTDALGIDGDAKEALAFAWLAVR 338 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcC-CcccCHHHcCCChhHHHHHHHHHHHHH
Confidence 4444455555566666665433 224689999999999999999999995 33321 245555556666777754
Q ss_pred H
Q 006381 386 L 386 (647)
Q Consensus 386 ~ 386 (647)
.
T Consensus 339 ~ 339 (365)
T PRK09585 339 T 339 (365)
T ss_pred H
Confidence 3
No 118
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=82.71 E-value=8.7 Score=38.82 Aligned_cols=172 Identities=17% Similarity=0.208 Sum_probs=91.0
Q ss_pred cChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCCeEE-----EEEeeCCCCCChHHHHHHHHHHHHHHH
Q 006381 177 INEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFE-----VKATAGDTHLGGEDFDNRMVNHFVQEF 251 (647)
Q Consensus 177 i~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~-----v~~~~~~~~lGG~~~d~~l~~~l~~~~ 251 (647)
+..|+=..++|...... .-.+++|.|+-+-|..+.|- ++++. .+...| .++ --+|-.++..+-.-
T Consensus 129 ~aSpEKi~iay~a~~~~---~~~~~ivsDiSSNTVtlaVk---~GKIVggidaciGAPG--~lh-GpLDlE~ir~Id~g- 198 (326)
T TIGR03281 129 IASPEKVSIAYNAYCLT---GFKDFIVSDISSNTVTLLIK---DGKIIGGFDACVGAPG--VLH-GPLDLEAIRNIDAG- 198 (326)
T ss_pred cCCHHHHHHHHHHHHHc---CCCCEEEEecCCCeEEEEEE---CCEEEccccccccCcc--ccc-CcccHHHHHhcccC-
Confidence 45677777777554443 23689999999988887765 33221 011112 122 23454444433110
Q ss_pred HhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCcEEEEEccccCCceeEEeecHHHHHHHHHH------HHHHHHHHHHH
Q 006381 252 KRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYSPITRARFEELNMD------LFRKCMEPVEK 325 (647)
Q Consensus 252 ~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~d~~~~itr~~fe~~~~~------~~~~~~~~i~~ 325 (647)
+. .+-..||..--..+. ..+.+ ...+++||.+.+.. -++.+...+..
T Consensus 199 ------~~---------------tan~aFs~aGa~kIa--~~~~~----~~~~~eE~~~~~~~~e~~~lA~dal~~~vam 251 (326)
T TIGR03281 199 ------KK---------------TANEAFSHAGAVKIA--CADKG----VENAKEEILNNYNGDEPGRLALDSLAMSVAM 251 (326)
T ss_pred ------cc---------------cHHHHHhhcCeeEEe--ccccc----ccCCHHHHHHHhccChhHHHHHHHHHHHHHH
Confidence 00 111223222221111 11111 14567777654421 23333333333
Q ss_pred HHHHcCCCCCCCCeEEEEcC--CCCcH-HHHHHHHhhhCCccccCCCCchhhHHhHHHHHHHHHcC
Q 006381 326 CLRDAKMDKSSVHDVVLVGG--STRIP-KVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSG 388 (647)
Q Consensus 326 ~l~~~~~~~~~i~~ViLvGG--~s~~p-~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~~~~ 388 (647)
.+............|+|.|- +.+.| .+++.|++.| ..++. .+.. +..|.|+|+.|.-+.+
T Consensus 252 eIasLl~l~~~~~~IvLSGs~g~~r~~~~v~~~I~~~L-~~~V~-~L~~-ksAA~G~AiIA~dI~g 314 (326)
T TIGR03281 252 EIASLGLLDCKEAGVVLAGSGGTLREPINFSGKIKRVL-SCKVL-VLDS-ESAAIGLALIAEDIFS 314 (326)
T ss_pred HHHhheeccCCCCcEEEeCcchhccCchHHHHHHHHHh-CCCeE-Eecc-hhhhhhHHHHHHHHhC
Confidence 22222222123458999987 99999 9999999999 45543 3343 7899999999987764
No 119
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=82.53 E-value=19 Score=37.01 Aligned_cols=36 Identities=25% Similarity=0.588 Sum_probs=27.6
Q ss_pred HHHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhh
Q 006381 320 MEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFF 360 (647)
Q Consensus 320 ~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f 360 (647)
.+.++++++.. .++.|+|+||.+...++++.|.+.+
T Consensus 247 ~~~~~~~~~~~-----g~~~vvlsGGVa~N~~L~~~l~~~~ 282 (305)
T TIGR00329 247 IEKTKRALKDT-----GPKELVLVGGVSANKRLREMLETLC 282 (305)
T ss_pred HHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHHHH
Confidence 34444444432 4779999999999999999998887
No 120
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=79.96 E-value=79 Score=32.79 Aligned_cols=42 Identities=19% Similarity=0.347 Sum_probs=30.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHhhhC--CccccCCC---CchhhHHhH
Q 006381 337 VHDVVLVGGSTRIPKVQQLLQDFFN--GKELCKSI---NPDEAVAYG 378 (647)
Q Consensus 337 i~~ViLvGG~s~~p~v~~~l~~~f~--~~~v~~~~---~p~~ava~G 378 (647)
+..|+|+||.+...++++.|.+.+. +.++..+. -.|..++.|
T Consensus 243 ~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~~p~~D~Gi~Ig 289 (322)
T TIGR03722 243 KKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPPEYAGDNGAMIA 289 (322)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCCCCCchHHHHHH
Confidence 6789999999999999999998652 23333222 235667777
No 121
>PRK03011 butyrate kinase; Provisional
Probab=78.63 E-value=4.8 Score=42.39 Aligned_cols=47 Identities=21% Similarity=0.227 Sum_probs=36.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHhhhC---CccccCCCCchhhHHhHHHHH
Q 006381 336 SVHDVVLVGGSTRIPKVQQLLQDFFN---GKELCKSINPDEAVAYGAAVQ 382 (647)
Q Consensus 336 ~i~~ViLvGG~s~~p~v~~~l~~~f~---~~~v~~~~~p~~ava~GAa~~ 382 (647)
+++.|+|.||.+..+.+++.|.+.+. ...+....+..+|.+.||+..
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~rv 344 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALRV 344 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH
Confidence 58999999999999999998888763 234445556667999998754
No 122
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=76.80 E-value=1.3e+02 Score=33.62 Aligned_cols=51 Identities=16% Similarity=0.246 Sum_probs=37.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHhhh--CCccccCCC---CchhhHHhHHHHHHHHHc
Q 006381 337 VHDVVLVGGSTRIPKVQQLLQDFF--NGKELCKSI---NPDEAVAYGAAVQAAILS 387 (647)
Q Consensus 337 i~~ViLvGG~s~~p~v~~~l~~~f--~~~~v~~~~---~p~~ava~GAa~~a~~~~ 387 (647)
++.|+|+||-+...++++.|.+.+ .+.++..+. -.|.+++.|++.+....+
T Consensus 246 ~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~ 301 (535)
T PRK09605 246 KDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKA 301 (535)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHc
Confidence 678999999999999999999665 233444333 457889999887655444
No 123
>PRK00976 hypothetical protein; Provisional
Probab=76.18 E-value=12 Score=38.58 Aligned_cols=49 Identities=22% Similarity=0.326 Sum_probs=38.1
Q ss_pred CCCeEEEEcCCCCcH--HHHHHHHhhhCCccccCCCCchhhHHhHHHHHHHHHc
Q 006381 336 SVHDVVLVGGSTRIP--KVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILS 387 (647)
Q Consensus 336 ~i~~ViLvGG~s~~p--~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~~~ 387 (647)
+++.|+|-||.++.+ .+.+.+++.+. .. ...-...+-++|||+.|....
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~-~~--~a~LG~dAGaiGAA~iA~~i~ 313 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLD-KK--VLVLGKESAAIGLALIARDIF 313 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhc-cc--ccccCCchHHHHHHHHHHHHh
Confidence 378999999999998 78889988873 23 223345899999999987664
No 124
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=76.02 E-value=25 Score=33.86 Aligned_cols=64 Identities=16% Similarity=0.308 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCc--cccCCCCchhhHHhHHHHH
Q 006381 313 MDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGK--ELCKSINPDEAVAYGAAVQ 382 (647)
Q Consensus 313 ~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~--~v~~~~~p~~ava~GAa~~ 382 (647)
+.+|.-+++.-++++...+ -+.|++|||-+..-.+|+++....... ++ ..-|-..++-.|+.+.
T Consensus 236 EtvFamLVEiTERAMAh~~-----s~evLIVGGVGCN~RLQeMM~~Mc~eRgg~~-faTDeRfCIDNG~MIA 301 (336)
T KOG2708|consen 236 ETVFAMLVEITERAMAHCG-----SKEVLIVGGVGCNERLQEMMAIMCSERGGKL-FATDERFCIDNGVMIA 301 (336)
T ss_pred HHHHHHHHHHHHHHHhhcC-----CCcEEEEecccccHHHHHHHHHHHHhcCCce-EecccceeeeCchHHH
Confidence 3455555666667766554 368999999999999999998877321 22 2234444666666553
No 125
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=75.50 E-value=45 Score=34.78 Aligned_cols=54 Identities=22% Similarity=0.247 Sum_probs=42.6
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHhhhCCcccc----CCCCchhhHHhHHHHHHHHH
Q 006381 333 DKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELC----KSINPDEAVAYGAAVQAAIL 386 (647)
Q Consensus 333 ~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~----~~~~p~~ava~GAa~~a~~~ 386 (647)
.....+.++++||+.+.|++.+.|...+++.+|. ..++++..=|.+-|+.|...
T Consensus 287 ~~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r~ 344 (371)
T COG2377 287 LQGDPRRLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWRT 344 (371)
T ss_pred ccCCCceeEeecCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHHH
Confidence 3456789999999999999999999999765554 24577777777778777654
No 126
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=74.88 E-value=2.9 Score=47.64 Aligned_cols=42 Identities=29% Similarity=0.510 Sum_probs=28.8
Q ss_pred eeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEE
Q 006381 173 VMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLT 217 (647)
Q Consensus 173 ~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~ 217 (647)
+..+.+=|.|..+........ ..+ +++++|+||.|||++++.
T Consensus 255 v~tI~SGPAagvvGAa~ltg~--~~g-~~i~~DmGGTStDva~i~ 296 (674)
T COG0145 255 VETILSGPAAGVVGAAYLTGL--KAG-NAIVFDMGGTSTDVALII 296 (674)
T ss_pred eeeEeeccHHHHHHHHHhccc--ccC-CEEEEEcCCcceeeeeee
Confidence 344667777776655433111 122 599999999999999887
No 127
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=73.58 E-value=8.5 Score=40.45 Aligned_cols=158 Identities=22% Similarity=0.286 Sum_probs=78.0
Q ss_pred CCEEEEecCccceEEEEEE--C---CeeEEEecCCCCcccceEEEEcCCceEecHHHHHHHhhCcCchHHhhHHhhCCCC
Q 006381 7 GPAIGIDLGTTYSCVGVWQ--H---DRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPINTVFDAKRLIGRRF 81 (647)
Q Consensus 7 ~~vvGID~GTt~s~va~~~--~---g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~ 81 (647)
.++|-||=|+|-|.|-++. + +.+-.+..+-=....|-.-+|.+ +|.....++..+|....
T Consensus 67 ~Y~iiiDAGSTGsRvHvY~F~~~~~~~~p~le~E~F~~~kPGLSsfad---------------dp~~aA~Sl~~LLd~A~ 131 (453)
T KOG1385|consen 67 QYAIIIDAGSTGTRVHVYKFDQCLPGMPPELEHELFKEVKPGLSSFAD---------------DPEEAANSLRPLLDVAE 131 (453)
T ss_pred EEEEEEecCCCcceEEEEEeccCCCCCCchhHHHHHhhcCCcccccCC---------------ChHHHHHhHHHHHHHHH
Confidence 4688999999999999884 2 21111211111223344334433 44444555666663321
Q ss_pred CChhhhhcccCCCeEEEecCCCcceEEEEEcCceeEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHH
Q 006381 82 SDATVQSDTKLWPFKVIAGAGDKPMIVVTYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQA 161 (647)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~~~~~qr~~ 161 (647)
. ..|.... .-.| +.+. ........|.+-+..+|+.++++.+......+..-.++|=.
T Consensus 132 ~---------~vP~~~~---~kTP-i~lk-ATAGLRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~VsIm~--------- 188 (453)
T KOG1385|consen 132 A---------FVPREHW---KKTP-IVLK-ATAGLRLLPGSKADNILQAVRELLKNDSPFPVVEDAVSIMD--------- 188 (453)
T ss_pred h---------hCCHhHh---ccCc-eEEE-eecccccCChhHHHHHHHHHHHHHhccCCccccCCceeecc---------
Confidence 1 1111110 0011 1111 11234567888899999999998774333222111122211
Q ss_pred HHHHHHHcCCceeEecChhHHH--HhcccccccccCCCCeeEEEEEeCCCceEEEEEE
Q 006381 162 TKDAGVIAGLNVMRIINEPTAA--AIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLT 217 (647)
Q Consensus 162 l~~Aa~~AGl~~~~li~Ep~Aa--a~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~ 217 (647)
=.+|..-| .+.|.+..-.. ....++-|+|+|||+|.++..-
T Consensus 189 --------------GtdEGv~aWiTiN~Llg~L~~-~~~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 189 --------------GTDEGVYAWITINYLLGTLGA-PGHRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred --------------CcccceeeeeehhhhhcccCC-CCCCceEEEEcCCceEEEEEec
Confidence 11122111 13343322221 1256899999999999999764
No 128
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=73.51 E-value=2.9 Score=41.46 Aligned_cols=18 Identities=33% Similarity=0.457 Sum_probs=16.5
Q ss_pred CEEEEecCccceEEEEEE
Q 006381 8 PAIGIDLGTTYSCVGVWQ 25 (647)
Q Consensus 8 ~vvGID~GTt~s~va~~~ 25 (647)
+++|||+|||++++++++
T Consensus 1 y~lgiDiGTts~K~~l~d 18 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFD 18 (245)
T ss_dssp EEEEEEECSSEEEEEEEE
T ss_pred CEEEEEEcccceEEEEEe
Confidence 479999999999999986
No 129
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=73.03 E-value=7.6 Score=44.86 Aligned_cols=49 Identities=24% Similarity=0.375 Sum_probs=37.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHhhhC--CccccCC---CCchhhHHhHHHHHHH
Q 006381 336 SVHDVVLVGGSTRIPKVQQLLQDFFN--GKELCKS---INPDEAVAYGAAVQAA 384 (647)
Q Consensus 336 ~i~~ViLvGG~s~~p~v~~~l~~~f~--~~~v~~~---~~p~~ava~GAa~~a~ 384 (647)
.++.|+|+||..+..++++.|.+.+. +.++..+ .-.|.++++|.|++|+
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 47789999999999999999988773 2333322 2357899999988764
No 130
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=72.56 E-value=13 Score=27.90 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=26.8
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 006381 145 NAVVTVPAYFNDSQRQATKDAGVIAGLNV 173 (647)
Q Consensus 145 ~~ViTVPa~~~~~qr~~l~~Aa~~AGl~~ 173 (647)
...++.|+.++..+|..+.+.|+..||..
T Consensus 16 ~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s 44 (59)
T cd06007 16 NEEYEFPSSLTNHERAVIHRLCRKLGLKS 44 (59)
T ss_pred ccEEEcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 67889999999999999999999999865
No 131
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=72.22 E-value=1.3e+02 Score=31.31 Aligned_cols=210 Identities=19% Similarity=0.296 Sum_probs=105.0
Q ss_pred EeHHHHHHHHHHHHHHHHHHHh---CC---CCCcEEEEeCCCCCHHHHHHH---HHHHHHcCCceeEecChhHHHHhccc
Q 006381 118 FAAEEISSMVLIKMREIAEAYL---GS---TVKNAVVTVPAYFNDSQRQAT---KDAGVIAGLNVMRIINEPTAAAIAYG 188 (647)
Q Consensus 118 ~~~~ev~a~~L~~l~~~a~~~~---~~---~~~~~ViTVPa~~~~~qr~~l---~~Aa~~AGl~~~~li~Ep~Aaa~~y~ 188 (647)
+-|+..+....+.+-...++.+ +. .++-+.+|.=+.....-+--. |.-|...+.+ +.-++-..+=.+.-.
T Consensus 41 VvPe~Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T~gPGL~gaL~VG~~~Ak~LA~a~~kP-li~VnH~~gHi~a~~ 119 (342)
T COG0533 41 VVPELASRHHVENIPPLIEEALAEAGVSLEDIDAIAVTAGPGLGGALLVGATAAKALALALNKP-LIPVNHLEGHIEAAR 119 (342)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEecCCCchhHHHHHHHHHHHHHHHhCCC-EeecchHHHHHHHHH
Confidence 5678788777777766655443 22 355566665555443332221 1122222332 334454444333222
Q ss_pred ccccccCCCCeeEEEEEeCCCceEEEEEEEeC-CeEEEEEeeCCCCCChHHHHHHHHHHHHHHHHhhccCCCCCCHHHHH
Q 006381 189 LDKKATSVGEKNVLIFDLGGGTFDVSLLTIEE-GIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALR 267 (647)
Q Consensus 189 ~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~-~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~ 267 (647)
+.... ....+..=+-||.|.+..+ .+ +.+++++..-|..+ |+.||+ +.+..+......| .+.
T Consensus 120 l~~~~----~~p~v~LlVSGGHTqli~~--~~~g~y~ilGeTlDdA~-Gea~DK---------vAR~lGL~yPGGp-~Ie 182 (342)
T COG0533 120 LETGL----AFPPVALLVSGGHTQLIAV--RGIGRYEVLGETLDDAA-GEAFDK---------VARLLGLGYPGGP-AIE 182 (342)
T ss_pred hccCC----CCCcEEEEEecCceEEEEE--cCCCcEEEEeeechhhh-hHHHHH---------HHHHhCCCCCCcH-HHH
Confidence 22221 2234444455666655444 44 67898888775443 455553 3333344443333 222
Q ss_pred HHHHHHHHHHHHcCCCCcEEEEEcc-ccCC--ceeEE------------------eecHHHHHHHHHH----HHHHHHHH
Q 006381 268 RLRTSCERAKRTLSSTAQTTIEIDS-LYEG--IDFYS------------------PITRARFEELNMD----LFRKCMEP 322 (647)
Q Consensus 268 ~L~~~~e~~K~~Ls~~~~~~~~i~~-~~~~--~d~~~------------------~itr~~fe~~~~~----~~~~~~~~ 322 (647)
+| |++-.. . .+.++. ...+ .||++ .+..++.+++|.. .++-+++.
T Consensus 183 ~l---A~~G~~------~-~~~fP~~~~~~~~~DfSFSGLkTa~~~~~~~~~~~~~~~~~d~~dia~sfQ~av~~~L~~k 252 (342)
T COG0533 183 KL---AKKGDP------D-AFEFPRPMVKGKNLDFSFSGLKTAVLRLLKKLKQKEELNEEDKEDIAASFQEAVFDMLVEK 252 (342)
T ss_pred HH---HhcCCC------C-ceeCCccccCCCCcceehHhHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 22 222110 0 011111 1111 22222 1233444445543 45555666
Q ss_pred HHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhh
Q 006381 323 VEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFF 360 (647)
Q Consensus 323 i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f 360 (647)
.+++++..+ .+.++++||-+....+|+++++..
T Consensus 253 t~rAl~~~~-----~~~lvi~GGVaaN~~LR~~l~~~~ 285 (342)
T COG0533 253 TERALKHTG-----KKELVIAGGVAANSRLREMLEEMC 285 (342)
T ss_pred HHHHHHHhC-----CCEEEEeccHHHhHHHHHHHHHHH
Confidence 677777655 568999999999999999999876
No 132
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=70.87 E-value=4 Score=33.84 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=16.2
Q ss_pred CEEEEecCccceEEEEEE
Q 006381 8 PAIGIDLGTTYSCVGVWQ 25 (647)
Q Consensus 8 ~vvGID~GTt~s~va~~~ 25 (647)
.++|||+|.|++++|+.+
T Consensus 2 ~ilgiD~Ggt~i~~a~~d 19 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVD 19 (99)
T ss_pred cEEEEccCCCeEEEEEEC
Confidence 389999999999999885
No 133
>PTZ00107 hexokinase; Provisional
Probab=69.79 E-value=1.8e+02 Score=31.95 Aligned_cols=81 Identities=16% Similarity=0.235 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHcCCCCCCCCeEEEEcCC-CCcHHHHHHHHhhhC----C--ccccCCCCchh
Q 006381 305 RARFEELNMDLFRKCMEPVEKCL----RDAKMDKSSVHDVVLVGGS-TRIPKVQQLLQDFFN----G--KELCKSINPDE 373 (647)
Q Consensus 305 r~~fe~~~~~~~~~~~~~i~~~l----~~~~~~~~~i~~ViLvGG~-s~~p~v~~~l~~~f~----~--~~v~~~~~p~~ 373 (647)
+.-+..+|.-+..|...++...+ .+.+... .--.|-+.|+. -..|..++.+++.+. . .++ .-.-.+.
T Consensus 370 ~~~lr~i~~~V~~RAA~L~Aa~iaail~k~~~~~-~~~~VgvDGSv~~~~p~f~~~~~~~l~~ll~~~~~~v-~l~~a~D 447 (464)
T PTZ00107 370 LYTIRKICELVRGRAAQLAAAFIAAPAKKTRTVQ-GKATVAIDGSVYVKNPWFRRLLQEYINSILGPDAGNV-VFYLADD 447 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CceEEEEeCcceecCccHHHHHHHHHHHHhCCCCCcE-EEEEccC
Confidence 33445566666666655443333 2322211 11234444444 357777777776662 1 112 2223455
Q ss_pred hHHhHHHHHHHHHc
Q 006381 374 AVAYGAAVQAAILS 387 (647)
Q Consensus 374 ava~GAa~~a~~~~ 387 (647)
..-+|||+.||...
T Consensus 448 GSg~GAAl~AA~~~ 461 (464)
T PTZ00107 448 GSGKGAAIIAAMVA 461 (464)
T ss_pred chHHHHHHHHHHhc
Confidence 78899999998764
No 134
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=67.69 E-value=24 Score=37.57 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=21.5
Q ss_pred CCCCEEEEecCccceEEEEEE---CCeeEE
Q 006381 5 GEGPAIGIDLGTTYSCVGVWQ---HDRVEI 31 (647)
Q Consensus 5 ~~~~vvGID~GTt~s~va~~~---~g~~~i 31 (647)
....++.||||.||.++|+.. +|++++
T Consensus 73 e~g~~LaiD~GGTnlRvc~V~l~g~gt~~~ 102 (466)
T COG5026 73 ESGSVLAIDLGGTNLRVCLVVLGGDGTFDI 102 (466)
T ss_pred CCCCEEEEecCCceEEEEEEEeCCCCCccc
Confidence 356899999999999999884 455554
No 135
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=67.09 E-value=4.5 Score=45.21 Aligned_cols=19 Identities=16% Similarity=0.211 Sum_probs=17.4
Q ss_pred CCEEEEecCccceEEEEEE
Q 006381 7 GPAIGIDLGTTYSCVGVWQ 25 (647)
Q Consensus 7 ~~vvGID~GTt~s~va~~~ 25 (647)
..++|||+|||++++++++
T Consensus 3 ~~~lgID~GTts~Ka~l~d 21 (520)
T PRK10939 3 SYLMALDAGTGSIRAVIFD 21 (520)
T ss_pred cEEEEEecCCCceEEEEEC
Confidence 4799999999999999995
No 136
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=67.06 E-value=1.5e+02 Score=30.17 Aligned_cols=182 Identities=13% Similarity=0.129 Sum_probs=92.6
Q ss_pred eeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCCeEEEEEe---eCCCCCChHHHHHHHHHHHHH
Q 006381 173 VMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKAT---AGDTHLGGEDFDNRMVNHFVQ 249 (647)
Q Consensus 173 ~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~---~~~~~lGG~~~d~~l~~~l~~ 249 (647)
.+.+.++...|...... .+..+ |+=+|.||.-+.. .+++....+- .=....+|..+-+.+.+....
T Consensus 99 ~v~v~~Dg~iAl~ga~~-------~~~Gi-i~i~GTGSi~~~~---~gg~~~r~GG~Gf~IgDegSga~ig~~~L~~~lr 167 (301)
T COG2971 99 KVDVENDGLIALRGALG-------DDDGI-IVIAGTGSIGYGR---KGGRRERVGGWGFPIGDEGSGAWIGREALQEALR 167 (301)
T ss_pred eEEEecChHHHHhhccC-------CCCCE-EEEecCCeEEEEE---eCCeeEEecCcCccccccchHHHHHHHHHHHHHH
Confidence 66777777666443211 12233 4446777765544 3433322221 112356788888888877776
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCcEEEEEccccCC--ce-eEEeecHHHHHHH------HHHHHHHHH
Q 006381 250 EFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEG--ID-FYSPITRARFEEL------NMDLFRKCM 320 (647)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~--~d-~~~~itr~~fe~~------~~~~~~~~~ 320 (647)
.+........ -++.+...|..+...-+. ..+.. .+ ..-.++..-|+-+ ...++++..
T Consensus 168 a~DG~~~~t~------------L~d~v~~~f~~d~edlv~--~~y~a~~~~~~ia~lap~V~~~A~~GD~~A~~Il~~aa 233 (301)
T COG2971 168 AFDGRREATP------------LTDAVMAEFNLDPEDLVA--FIYKAGPGDKKIAALAPAVFEAARKGDPVAIRILKEAA 233 (301)
T ss_pred HhcCCccCCh------------HHHHHHHHhCCCHHHHHH--HHHhcCCchHHHHHhhHHHHHHHHcCCHHHHHHHHHHH
Confidence 6543222110 122222233221111000 00000 00 0012333334322 225666667
Q ss_pred HHHHHHHHHcCCCCCCCCeEEEEcCCCCc-HHHHHHHHhhhCCccccCCCCchhhHHhHHHHHHHHHc
Q 006381 321 EPVEKCLRDAKMDKSSVHDVVLVGGSTRI-PKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILS 387 (647)
Q Consensus 321 ~~i~~~l~~~~~~~~~i~~ViLvGG~s~~-p~v~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~~~ 387 (647)
..|...++.... ......+.|.||.... |++.....+.... +|.--+..||.+.|....
T Consensus 234 ~~i~~~~~~l~~-~~g~~~l~l~GG~~~~~~~~~~~~~~~l~~-------~~~~D~~~GA~~~A~~~~ 293 (301)
T COG2971 234 AYIATLLEALSI-FNGSEKLSLLGGLAPSYPYYLSLFRRALLV-------PPIGDALSGAVLLALGRF 293 (301)
T ss_pred HHHHHHHHHHhc-ccCCceEEEeccccccchhhHHHHHHHhcC-------CccccHHHHHHHHHHHhh
Confidence 777777776532 2335689999999877 8888888777632 225567889998886443
No 137
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=66.81 E-value=4.6 Score=44.90 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=17.3
Q ss_pred CEEEEecCccceEEEEEEC
Q 006381 8 PAIGIDLGTTYSCVGVWQH 26 (647)
Q Consensus 8 ~vvGID~GTt~s~va~~~~ 26 (647)
.++|||+|||++++++++.
T Consensus 3 ~~lgiDiGTts~Ka~l~d~ 21 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDE 21 (504)
T ss_pred EEEEEecCCCceEEEEECC
Confidence 6999999999999999953
No 138
>PLN02362 hexokinase
Probab=65.16 E-value=38 Score=37.44 Aligned_cols=21 Identities=33% Similarity=0.177 Sum_probs=18.1
Q ss_pred CCCCEEEEecCccceEEEEEE
Q 006381 5 GEGPAIGIDLGTTYSCVGVWQ 25 (647)
Q Consensus 5 ~~~~vvGID~GTt~s~va~~~ 25 (647)
.....++||||.||..|+.++
T Consensus 93 E~G~fLAlDlGGTNfRV~~V~ 113 (509)
T PLN02362 93 EIGTYYALDLGGTNFRVLRVQ 113 (509)
T ss_pred cceeEEEEecCCceEEEEEEE
Confidence 346799999999999999884
No 139
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=64.95 E-value=1.3e+02 Score=31.45 Aligned_cols=47 Identities=21% Similarity=0.219 Sum_probs=34.6
Q ss_pred CCCeEEEEcCCCCc-HHHHHHHH---hhh--CCccccCCCCchhhHHhHHHHH
Q 006381 336 SVHDVVLVGGSTRI-PKVQQLLQ---DFF--NGKELCKSINPDEAVAYGAAVQ 382 (647)
Q Consensus 336 ~i~~ViLvGG~s~~-p~v~~~l~---~~f--~~~~v~~~~~p~~ava~GAa~~ 382 (647)
.++.|+++|.+-+. |..++.|. .++ +..+.....|...+-|+||.+.
T Consensus 287 ~~~~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~gy~galGa~l~ 339 (341)
T PF03630_consen 287 GVKRIVFGGSFIRNNPITMRTLSYAINFWSKGELKALFLRHEGYLGALGAFLK 339 (341)
T ss_dssp T--EEEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEETTTTSHHHHHHHHT
T ss_pred CCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEecCCchhHHHHHHHh
Confidence 47899999999875 77888887 555 3445667778899999999874
No 140
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=64.74 E-value=6.6 Score=35.03 Aligned_cols=20 Identities=25% Similarity=0.306 Sum_probs=18.0
Q ss_pred CEEEEecCccceEEEEEECC
Q 006381 8 PAIGIDLGTTYSCVGVWQHD 27 (647)
Q Consensus 8 ~vvGID~GTt~s~va~~~~g 27 (647)
.++|||+|+..+++|+.++.
T Consensus 2 riL~lD~G~kriGiAvsd~~ 21 (135)
T PF03652_consen 2 RILGLDYGTKRIGIAVSDPL 21 (135)
T ss_dssp EEEEEEECSSEEEEEEEETT
T ss_pred eEEEEEeCCCeEEEEEecCC
Confidence 48999999999999999765
No 141
>PRK09343 prefoldin subunit beta; Provisional
Probab=64.55 E-value=97 Score=27.00 Aligned_cols=51 Identities=22% Similarity=0.300 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHhccc
Q 006381 566 SKLAPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQGA 620 (647)
Q Consensus 566 ~~~~~~~~~~i~~~l~~~~~wl~~~~~~~~~~~~~k~~~l~~~~~~i~~r~~e~~ 620 (647)
..+-..++..+...+++-.+.++. ..+.++.+.+.|++.+......+.+..
T Consensus 62 ~vlv~qd~~e~~~~l~~r~E~ie~----~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 62 NLLVKVDKTKVEKELKERKELLEL----RSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455777777777777777774 577788888888888888888877755
No 142
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=64.35 E-value=26 Score=26.30 Aligned_cols=42 Identities=19% Similarity=0.235 Sum_probs=32.0
Q ss_pred HHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCcee
Q 006381 132 REIAEAYLGSTVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVM 174 (647)
Q Consensus 132 ~~~a~~~~~~~~~~~ViTVPa~~~~~qr~~l~~Aa~~AGl~~~ 174 (647)
.+....+.... ....++.|+.++..+|..+.+.|+..||...
T Consensus 5 ~~~i~~F~~s~-~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s~ 46 (60)
T cd02640 5 RQIIQNYAHSD-DIRDMVFSPEFSKEERALIHQIAQKYGLKSR 46 (60)
T ss_pred HHHHHHHHcCC-ccceEEcCCCCCHHHHHHHHHHHHHcCCcee
Confidence 33344444333 3577899999999999999999999999753
No 143
>PLN02405 hexokinase
Probab=63.75 E-value=37 Score=37.43 Aligned_cols=21 Identities=29% Similarity=0.131 Sum_probs=17.9
Q ss_pred CCCCEEEEecCccceEEEEEE
Q 006381 5 GEGPAIGIDLGTTYSCVGVWQ 25 (647)
Q Consensus 5 ~~~~vvGID~GTt~s~va~~~ 25 (647)
.....++||||.||..|+..+
T Consensus 93 E~G~flAlDlGGTNfRV~~V~ 113 (497)
T PLN02405 93 EKGLFYALDLGGTNFRVLRVL 113 (497)
T ss_pred cceeEEEEecCCceEEEEEEE
Confidence 346799999999999999874
No 144
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=61.78 E-value=11 Score=34.53 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=0.0
Q ss_pred CEEEEecCccceEEEEE--ECCeeEEE
Q 006381 8 PAIGIDLGTTYSCVGVW--QHDRVEII 32 (647)
Q Consensus 8 ~vvGID~GTt~s~va~~--~~g~~~ii 32 (647)
.|+|||.|+++++.|+. .++.+.++
T Consensus 1 rILGIDPGl~~~G~av~~~~~~~~~~~ 27 (154)
T cd00529 1 RILGIDPGSRNTGYGVIEQEGRKLIYL 27 (154)
T ss_pred CEEEEccCcCceEEEEEEeeCCeEEEE
No 145
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=61.49 E-value=1.1e+02 Score=30.46 Aligned_cols=97 Identities=18% Similarity=0.275 Sum_probs=56.9
Q ss_pred CCCCCcEEE--EeCCCCCHHHHHHHHHHHHHcCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEE
Q 006381 140 GSTVKNAVV--TVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLT 217 (647)
Q Consensus 140 ~~~~~~~Vi--TVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~ 217 (647)
+..+..++. .+|.+|+. -+++++++.-.|.+. .+++-..||.+....+..- .....++++|+|=|.|=..++
T Consensus 111 g~~~~~~~y~~~~P~~~TR--m~av~~~~~~~~~~~-~vmDTg~AAvlGal~d~~v--~~~~~~~~vniGN~HTlaa~v- 184 (254)
T PF08735_consen 111 GGRPESFVYADDPPPYFTR--MRAVRESLGGAGYDE-VVMDTGPAAVLGALCDPEV--SSREGIIVVNIGNGHTLAALV- 184 (254)
T ss_pred CCCHHHeeecCCCcHHHHH--HHHHHHHhccCCCCc-eEecCHHHHHhhhhcChhh--hccCCeEEEEeCCccEEEEEE-
Confidence 445667777 88988663 234555555555555 4555555555544333322 245689999999998888777
Q ss_pred EeCCeEEEEEeeCCCCCChHHHHHHH
Q 006381 218 IEEGIFEVKATAGDTHLGGEDFDNRM 243 (647)
Q Consensus 218 ~~~~~~~v~~~~~~~~lGG~~~d~~l 243 (647)
.++++.=+.......+-...+...|
T Consensus 185 -~~~rI~GvfEHHT~~l~~~kL~~~l 209 (254)
T PF08735_consen 185 -KDGRIYGVFEHHTGMLTPEKLEEYL 209 (254)
T ss_pred -eCCEEEEEEecccCCCCHHHHHHHH
Confidence 4444443433333455555444333
No 146
>PRK00047 glpK glycerol kinase; Provisional
Probab=61.25 E-value=7.3 Score=43.28 Aligned_cols=19 Identities=26% Similarity=0.302 Sum_probs=17.2
Q ss_pred CCEEEEecCccceEEEEEE
Q 006381 7 GPAIGIDLGTTYSCVGVWQ 25 (647)
Q Consensus 7 ~~vvGID~GTt~s~va~~~ 25 (647)
..++|||+|||++++++++
T Consensus 5 ~~~lgiD~GTts~Ka~l~d 23 (498)
T PRK00047 5 KYILALDQGTTSSRAIIFD 23 (498)
T ss_pred CEEEEEecCCCceEEEEEC
Confidence 4799999999999999985
No 147
>PRK04123 ribulokinase; Provisional
Probab=60.07 E-value=8.1 Score=43.49 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=17.4
Q ss_pred CCEEEEecCccceEEEEEE
Q 006381 7 GPAIGIDLGTTYSCVGVWQ 25 (647)
Q Consensus 7 ~~vvGID~GTt~s~va~~~ 25 (647)
..++|||+|||++++++++
T Consensus 3 ~~~lgiD~GTts~Ka~l~d 21 (548)
T PRK04123 3 AYVIGLDFGTDSVRALLVD 21 (548)
T ss_pred cEEEEEecCCCceEEEEEE
Confidence 3699999999999999997
No 148
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=59.54 E-value=8.4 Score=43.22 Aligned_cols=18 Identities=33% Similarity=0.333 Sum_probs=16.9
Q ss_pred CEEEEecCccceEEEEEE
Q 006381 8 PAIGIDLGTTYSCVGVWQ 25 (647)
Q Consensus 8 ~vvGID~GTt~s~va~~~ 25 (647)
.++|||+|||++++++++
T Consensus 2 ~~lgiD~GTss~Ka~l~d 19 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVD 19 (536)
T ss_pred eEEEEecCCCceEEEEEE
Confidence 589999999999999998
No 149
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=59.50 E-value=6.5 Score=40.53 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=16.9
Q ss_pred eeEEEEEeCCCceEEEEEE
Q 006381 199 KNVLIFDLGGGTFDVSLLT 217 (647)
Q Consensus 199 ~~vlV~D~GggT~dvsv~~ 217 (647)
.+++++||||.|+|++++.
T Consensus 128 ~~~I~~DmGGTTtDi~~i~ 146 (318)
T TIGR03123 128 PECLFVDMGSTTTDIIPII 146 (318)
T ss_pred CCEEEEEcCccceeeEEec
Confidence 3599999999999999985
No 150
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=58.62 E-value=78 Score=32.55 Aligned_cols=128 Identities=20% Similarity=0.234 Sum_probs=0.0
Q ss_pred CCCCCCEEEEecCccceEEEEEECCeeEEEecCCCCcccceEEEEcCCceEecHHHHHHHhhCcCchHHhhHHhhCCCCC
Q 006381 3 GKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPINTVFDAKRLIGRRFS 82 (647)
Q Consensus 3 ~~~~~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~ 82 (647)
+..+..++|||+|.|++.+++.+...-.+. ....|+
T Consensus 2 ~~~~~~~lgidIggt~i~~~l~d~~g~~l~-----~~~~~~--------------------------------------- 37 (314)
T COG1940 2 NPEAMTVLGIDIGGTKIKVALVDLDGEILL-----RERIPT--------------------------------------- 37 (314)
T ss_pred CccCcEEEEEEecCCEEEEEEECCCCcEEE-----EEEEec---------------------------------------
Q ss_pred ChhhhhcccCCCeEEEecCCCcceEEEEEcCceeEEeHHHHHHHHHHHHHHHHHHH-hCCCCCcEEEEeCCCCCHHH---
Q 006381 83 DATVQSDTKLWPFKVIAGAGDKPMIVVTYKGEEKQFAAEEISSMVLIKMREIAEAY-LGSTVKNAVVTVPAYFNDSQ--- 158 (647)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~-~~~~~~~~ViTVPa~~~~~q--- 158 (647)
...-..+++...++..+++....+ .......+.++.|.......
T Consensus 38 --------------------------------~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iGIgi~~pg~~~~~~~~~ 85 (314)
T COG1940 38 --------------------------------PTPDPEEAILEAILALVAELLKQAQGRVAIIGIGIPGPGDVDNGTVIV 85 (314)
T ss_pred --------------------------------CCCCchhHHHHHHHHHHHHHHHhcCCcCceEEEEeccceeccCCcEEe
Q ss_pred ----------HHHHHHHHHHcCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCC
Q 006381 159 ----------RQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGG 209 (647)
Q Consensus 159 ----------r~~l~~Aa~~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~Ggg 209 (647)
-..-..-.+..|+++ .+-|+..|+|++-.+.... .....++.+-+|-|
T Consensus 86 ~~~~~~~~~~~~l~~~L~~~~~~Pv-~veNDan~aalaE~~~g~~--~~~~~~~~i~~gtG 143 (314)
T COG1940 86 PAPNLGWWNGVDLAEELEARLGLPV-FVENDANAAALAEAWFGAG--RGIDDVVYITLGTG 143 (314)
T ss_pred ecCCCCccccccHHHHHHHHHCCCE-EEecHHHHHHHHHHHhCCC--CCCCCEEEEEEccc
No 151
>PLN02914 hexokinase
Probab=57.56 E-value=55 Score=35.99 Aligned_cols=20 Identities=35% Similarity=0.222 Sum_probs=17.5
Q ss_pred CCCEEEEecCccceEEEEEE
Q 006381 6 EGPAIGIDLGTTYSCVGVWQ 25 (647)
Q Consensus 6 ~~~vvGID~GTt~s~va~~~ 25 (647)
....++||||.||..|+.++
T Consensus 94 ~G~fLAlDlGGTNfRV~~V~ 113 (490)
T PLN02914 94 KGLFYALDLGGTNFRVLRVQ 113 (490)
T ss_pred eeEEEEEecCCceEEEEEEE
Confidence 45689999999999999884
No 152
>PLN02295 glycerol kinase
Probab=57.28 E-value=8.7 Score=42.82 Aligned_cols=21 Identities=29% Similarity=0.270 Sum_probs=17.7
Q ss_pred CEEEEecCccceEEEEEE-CCe
Q 006381 8 PAIGIDLGTTYSCVGVWQ-HDR 28 (647)
Q Consensus 8 ~vvGID~GTt~s~va~~~-~g~ 28 (647)
.++|||+|||++++++++ +|.
T Consensus 1 ~vlgID~GTts~Ka~l~d~~G~ 22 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDRDAR 22 (512)
T ss_pred CEEEEecCCCceEEEEECCCCC
Confidence 479999999999999995 443
No 153
>PF13941 MutL: MutL protein
Probab=54.74 E-value=10 Score=41.12 Aligned_cols=33 Identities=27% Similarity=0.607 Sum_probs=25.7
Q ss_pred EEEEecCccceEEEEEE--CCeeEEEecCCCCcccceEE
Q 006381 9 AIGIDLGTTYSCVGVWQ--HDRVEIIANDQGNRTTPSYV 45 (647)
Q Consensus 9 vvGID~GTt~s~va~~~--~g~~~ii~~~~g~~~~Ps~v 45 (647)
++.+|||+|+|++..++ .+..+++ |....||.|
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~i----g~a~apTTv 36 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLI----GQAEAPTTV 36 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEE----EEEeCCCCc
Confidence 68899999999999998 7777776 334556655
No 154
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=54.49 E-value=1.2e+02 Score=30.96 Aligned_cols=48 Identities=25% Similarity=0.239 Sum_probs=31.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHhhhCC--------ccccCCCCchhhHHhHHHHHH
Q 006381 336 SVHDVVLVGGSTRIPKVQQLLQDFFNG--------KELCKSINPDEAVAYGAAVQA 383 (647)
Q Consensus 336 ~i~~ViLvGG~s~~p~v~~~l~~~f~~--------~~v~~~~~p~~ava~GAa~~a 383 (647)
+++.|+|-||.+..|.+.+.|++.+.. .++......+.+.++|||..+
T Consensus 245 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 245 DPHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred CCCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHh
Confidence 367888888877766666666655521 123334455678999999875
No 155
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=54.25 E-value=66 Score=31.85 Aligned_cols=89 Identities=19% Similarity=0.311 Sum_probs=56.0
Q ss_pred eCCCCCHHHHHHHHHHHHH---cCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCCeEEEE
Q 006381 150 VPAYFNDSQRQATKDAGVI---AGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVK 226 (647)
Q Consensus 150 VPa~~~~~qr~~l~~Aa~~---AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~ 226 (647)
+|.+|+ .|+.|+.. ++-. ..+++.-.||+..+.++.. ....||+|+|-|.+-.+++ ..+++.-+
T Consensus 186 iPe~Ft-----RMraaa~sal~~~t~-av~mDskfaav~gal~dpa-----a~palvVd~GngHttaalv--dedRI~gv 252 (342)
T COG4012 186 IPESFT-----RMRAAAMSALSAGTD-AVAMDSKFAAVMGALVDPA-----ADPALVVDYGNGHTTAALV--DEDRIVGV 252 (342)
T ss_pred CchhHH-----HHHHHHHHHHhcCce-EEEEcchhHhhhhcccCcc-----cCceEEEEccCCceEEEEe--cCCeEEEE
Confidence 566665 34444333 3333 4566666777666655544 3489999999999988877 44566555
Q ss_pred EeeCCCCCChHHHHHHHHHHHHHHH
Q 006381 227 ATAGDTHLGGEDFDNRMVNHFVQEF 251 (647)
Q Consensus 227 ~~~~~~~lGG~~~d~~l~~~l~~~~ 251 (647)
.......+....|-..|.++..-++
T Consensus 253 ~EHHT~~Lspekled~I~rf~~GeL 277 (342)
T COG4012 253 YEHHTIRLSPEKLEDQIIRFVEGEL 277 (342)
T ss_pred eecccccCCHHHHHHHHHHHHhccc
Confidence 5555567777777666666654433
No 156
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=54.22 E-value=10 Score=41.97 Aligned_cols=18 Identities=39% Similarity=0.366 Sum_probs=16.6
Q ss_pred CEEEEecCccceEEEEEE
Q 006381 8 PAIGIDLGTTYSCVGVWQ 25 (647)
Q Consensus 8 ~vvGID~GTt~s~va~~~ 25 (647)
.++|||+|||++++++++
T Consensus 2 ~~lgiDiGtt~iKa~l~d 19 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFD 19 (493)
T ss_pred eEEEEecCCCceEEEEEC
Confidence 589999999999999985
No 157
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=54.07 E-value=15 Score=32.95 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=18.2
Q ss_pred CCEEEEecCccceEEEEEECC
Q 006381 7 GPAIGIDLGTTYSCVGVWQHD 27 (647)
Q Consensus 7 ~~vvGID~GTt~s~va~~~~g 27 (647)
..++|||+|+..+++|+.++.
T Consensus 4 ~~iLalD~G~kriGvAv~d~~ 24 (138)
T PRK00109 4 GRILGLDVGTKRIGVAVSDPL 24 (138)
T ss_pred CcEEEEEeCCCEEEEEEecCC
Confidence 459999999999999988653
No 158
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=53.81 E-value=10 Score=42.55 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=15.9
Q ss_pred EEEEecCccceEEEEEE
Q 006381 9 AIGIDLGTTYSCVGVWQ 25 (647)
Q Consensus 9 vvGID~GTt~s~va~~~ 25 (647)
++|||+|||++++++++
T Consensus 2 ~lgID~GTts~Ka~l~d 18 (541)
T TIGR01315 2 YIGVDVGTGSARACIID 18 (541)
T ss_pred EEEEEecCcCEEEEEEc
Confidence 79999999999999995
No 159
>PLN02596 hexokinase-like
Probab=52.48 E-value=96 Score=34.19 Aligned_cols=21 Identities=14% Similarity=0.072 Sum_probs=18.0
Q ss_pred CCCCEEEEecCccceEEEEEE
Q 006381 5 GEGPAIGIDLGTTYSCVGVWQ 25 (647)
Q Consensus 5 ~~~~vvGID~GTt~s~va~~~ 25 (647)
.....++||||.||..|+.++
T Consensus 94 E~G~yLAlDlGGTNfRV~~V~ 114 (490)
T PLN02596 94 EKGLYYGLNLRGSNFLLLRAR 114 (490)
T ss_pred cceEEEEEeeCCceEEEEEEE
Confidence 346789999999999999874
No 160
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=51.98 E-value=15 Score=33.01 Aligned_cols=21 Identities=24% Similarity=0.156 Sum_probs=18.3
Q ss_pred CCEEEEecCccceEEEEEECC
Q 006381 7 GPAIGIDLGTTYSCVGVWQHD 27 (647)
Q Consensus 7 ~~vvGID~GTt~s~va~~~~g 27 (647)
..++||||||-.++||+.+..
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~ 22 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDIL 22 (141)
T ss_pred ceEEEEecCCceEEEEEecCC
Confidence 468999999999999998654
No 161
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=51.49 E-value=58 Score=33.07 Aligned_cols=49 Identities=24% Similarity=0.203 Sum_probs=32.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHhhhCC------ccccCCCCchhhHHhHHHHHHH
Q 006381 336 SVHDVVLVGGSTRIPKVQQLLQDFFNG------KELCKSINPDEAVAYGAAVQAA 384 (647)
Q Consensus 336 ~i~~ViLvGG~s~~p~v~~~l~~~f~~------~~v~~~~~p~~ava~GAa~~a~ 384 (647)
+++.|+|.|+.+..+.+.+.+++.+.. .++......+.+.+.|||.++.
T Consensus 233 dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 233 DCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred CCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHhc
Confidence 368899988887777666667665532 1233333456788999998763
No 162
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=50.51 E-value=54 Score=33.57 Aligned_cols=39 Identities=23% Similarity=0.258 Sum_probs=25.4
Q ss_pred HcCCceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCC
Q 006381 168 IAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGG 209 (647)
Q Consensus 168 ~AGl~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~Ggg 209 (647)
..|++ +.+.|+-.|+|++-.+.... ...+.++++.+|.|
T Consensus 95 ~~~~p-V~ieNDa~aaalaE~~~g~~--~~~~~~~~l~~gtG 133 (303)
T PRK13310 95 RLGRD-VRLDNDANCFALSEAWDDEF--TQYPLVMGLILGTG 133 (303)
T ss_pred HHCCC-eEEeccHhHHHHHHhhhccc--cCCCcEEEEEecCc
Confidence 34775 67999999998874332211 13457888888865
No 163
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=47.38 E-value=17 Score=33.63 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=16.9
Q ss_pred CCEEEEecCccceEEEEEE
Q 006381 7 GPAIGIDLGTTYSCVGVWQ 25 (647)
Q Consensus 7 ~~vvGID~GTt~s~va~~~ 25 (647)
..|+|||-|++++..|+.+
T Consensus 2 m~iLGIDPgl~~tG~avi~ 20 (164)
T PRK00039 2 MRILGIDPGLRRTGYGVIE 20 (164)
T ss_pred CEEEEEccccCceeEEEEE
Confidence 4699999999999999874
No 164
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=47.16 E-value=52 Score=35.80 Aligned_cols=65 Identities=12% Similarity=0.154 Sum_probs=45.1
Q ss_pred EeCCCCCHHHHHHHHHHHHHcCCc---eeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEEEe
Q 006381 149 TVPAYFNDSQRQATKDAGVIAGLN---VMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE 219 (647)
Q Consensus 149 TVPa~~~~~qr~~l~~Aa~~AGl~---~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~ 219 (647)
.++......--+.+.+|.+.-|+. ++.++|+.++.-++..+.. +++++=+=+|.||=-+-+.+..
T Consensus 184 ~~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~------~~~~igvI~GTGtNacY~e~~~ 251 (474)
T KOG1369|consen 184 KATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYED------PNCEIGVIFGTGTNACYMEDMR 251 (474)
T ss_pred cchhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecC------CCcEEEEEECCCccceeeeecc
Confidence 344555556677888899888885 5778999998877654433 3466667778888766665544
No 165
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=46.97 E-value=41 Score=25.30 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=26.4
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCcee
Q 006381 145 NAVVTVPAYFNDSQRQATKDAGVIAGLNVM 174 (647)
Q Consensus 145 ~~ViTVPa~~~~~qr~~l~~Aa~~AGl~~~ 174 (647)
.-.++.|+.++..+|+.+...|...|+...
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la~~lGL~~~ 46 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLASRLGLNHV 46 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHcCCceE
Confidence 556788999999999999999999999653
No 166
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=46.55 E-value=32 Score=31.27 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=17.0
Q ss_pred EEEEecCccceEEEEEE--CCeeEEE
Q 006381 9 AIGIDLGTTYSCVGVWQ--HDRVEII 32 (647)
Q Consensus 9 vvGID~GTt~s~va~~~--~g~~~ii 32 (647)
|+|||-|+++++.|+.+ ++.+.++
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i 26 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLI 26 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEE
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEE
Confidence 69999999999999884 4455544
No 167
>PLN02669 xylulokinase
Probab=46.18 E-value=17 Score=40.95 Aligned_cols=20 Identities=20% Similarity=0.172 Sum_probs=17.7
Q ss_pred CCCEEEEecCccceEEEEEE
Q 006381 6 EGPAIGIDLGTTYSCVGVWQ 25 (647)
Q Consensus 6 ~~~vvGID~GTt~s~va~~~ 25 (647)
...++|||+||+.+++++++
T Consensus 7 ~~~~LGiD~GT~s~Ka~l~d 26 (556)
T PLN02669 7 DSLFLGFDSSTQSLKATVLD 26 (556)
T ss_pred CCeEEEEecccCCeEEEEEc
Confidence 35799999999999999985
No 168
>PRK13331 pantothenate kinase; Reviewed
Probab=45.70 E-value=29 Score=34.49 Aligned_cols=28 Identities=11% Similarity=0.139 Sum_probs=22.1
Q ss_pred CCCCCCCCEEEEecCccceEEEEEECCe
Q 006381 1 MAGKGEGPAIGIDLGTTYSCVGVWQHDR 28 (647)
Q Consensus 1 M~~~~~~~vvGID~GTt~s~va~~~~g~ 28 (647)
|.......++.||.|+|+++++++++++
T Consensus 1 ~~~~~~~~~L~iDiGNT~~~~g~f~~~~ 28 (251)
T PRK13331 1 MMFHTSNEWLALMIGNSRLHWGYFSGET 28 (251)
T ss_pred CCCCCCCcEEEEEeCCCcEEEEEEECCE
Confidence 3333456789999999999999998664
No 169
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=45.30 E-value=89 Score=23.42 Aligned_cols=28 Identities=14% Similarity=0.218 Sum_probs=25.8
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 006381 146 AVVTVPAYFNDSQRQATKDAGVIAGLNV 173 (647)
Q Consensus 146 ~ViTVPa~~~~~qr~~l~~Aa~~AGl~~ 173 (647)
..++.|+.++..||..+.+.|+..||..
T Consensus 18 ~~l~F~p~ls~~eR~~vH~lA~~~gL~s 45 (60)
T cd02641 18 TELEFPPTLSSHDRLLVHELAEELGLRH 45 (60)
T ss_pred CcEECCCCCCHHHHHHHHHHHHHcCCce
Confidence 5789999999999999999999999865
No 170
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=44.47 E-value=68 Score=32.18 Aligned_cols=48 Identities=25% Similarity=0.226 Sum_probs=34.8
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHhhhCC-ccc--cCCCCchhhHHhHHHH
Q 006381 334 KSSVHDVVLVGGSTRIPKVQQLLQDFFNG-KEL--CKSINPDEAVAYGAAV 381 (647)
Q Consensus 334 ~~~i~~ViLvGG~s~~p~v~~~l~~~f~~-~~v--~~~~~p~~ava~GAa~ 381 (647)
+..+|.|+|+||.++...+-++|.+...- .++ .-..+-.+|.|.||..
T Consensus 294 ~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lR 344 (358)
T COG3426 294 KGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALR 344 (358)
T ss_pred CCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHH
Confidence 45799999999999999999999886521 122 2233445688888864
No 171
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=43.39 E-value=64 Score=23.92 Aligned_cols=41 Identities=15% Similarity=0.297 Sum_probs=30.2
Q ss_pred HHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 006381 130 KMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 173 (647)
Q Consensus 130 ~l~~~a~~~~~~~~~~~ViTVPa~~~~~qr~~l~~Aa~~AGl~~ 173 (647)
.+.+..+.++... .-.++.|+ ++..+|..+.+.|...||..
T Consensus 3 ~i~~~i~~F~~~~--~~~~~fpp-m~~~~R~~vH~lA~~~~L~S 43 (58)
T cd02646 3 DIKDEIEAFLLDS--RDSLSFPP-MDKHGRKTIHKLANCYNLKS 43 (58)
T ss_pred HHHHHHHHHHhCC--CceEecCC-CCHHHHHHHHHHHHHcCCcc
Confidence 3444445554433 44679999 89999999999999998854
No 172
>PRK13318 pantothenate kinase; Reviewed
Probab=42.93 E-value=25 Score=35.17 Aligned_cols=20 Identities=25% Similarity=0.634 Sum_probs=17.7
Q ss_pred EEEEecCccceEEEEEECCe
Q 006381 9 AIGIDLGTTYSCVGVWQHDR 28 (647)
Q Consensus 9 vvGID~GTt~s~va~~~~g~ 28 (647)
+++||+|.|++++++++++.
T Consensus 2 iL~IDIGnT~iK~al~d~g~ 21 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGGK 21 (258)
T ss_pred EEEEEECCCcEEEEEEECCE
Confidence 68999999999999998654
No 173
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=42.86 E-value=5.2e+02 Score=28.81 Aligned_cols=81 Identities=20% Similarity=0.203 Sum_probs=53.7
Q ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHH-HHHHhhhCCcccc-CCCCchhhHHhHHH
Q 006381 303 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQ-QLLQDFFNGKELC-KSINPDEAVAYGAA 380 (647)
Q Consensus 303 itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~-~~l~~~f~~~~v~-~~~~p~~ava~GAa 380 (647)
..-.++...++..+++++..+-+-+.+... ...+.+.||....-..- +.+.+-+ ..++. .+.-.|.-.|.|||
T Consensus 256 ~~~~diAasaQ~~lE~l~l~~~~~~~~~~g----~~~L~~AGGVAlNv~~N~~~l~~~~-f~dlfV~Pa~gD~G~AvGAA 330 (555)
T COG2192 256 ERAADIAASAQAYLEELVLEMLRYLREETG----EDNLALAGGVALNVKANGKLLRRGL-FEDLFVQPAMGDAGLAVGAA 330 (555)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhC----ccceEEccceeeeeeehHhHhhccc-CceeEecCCCCCcchHHHHH
Confidence 344555666667777776666665554321 57899999998876666 5555554 33443 44456778999999
Q ss_pred HHHHHHcC
Q 006381 381 VQAAILSG 388 (647)
Q Consensus 381 ~~a~~~~~ 388 (647)
+++....+
T Consensus 331 l~~~~~~~ 338 (555)
T COG2192 331 LAVKRELG 338 (555)
T ss_pred HHHHHHhc
Confidence 99876553
No 174
>PRK13321 pantothenate kinase; Reviewed
Probab=42.58 E-value=26 Score=35.09 Aligned_cols=19 Identities=37% Similarity=0.543 Sum_probs=17.3
Q ss_pred EEEEecCccceEEEEEECC
Q 006381 9 AIGIDLGTTYSCVGVWQHD 27 (647)
Q Consensus 9 vvGID~GTt~s~va~~~~g 27 (647)
+++||+|.|++++++++++
T Consensus 2 iL~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 5899999999999999865
No 175
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=42.26 E-value=62 Score=32.05 Aligned_cols=73 Identities=21% Similarity=0.289 Sum_probs=43.6
Q ss_pred eEEEEEeCCCceEEEEEEEeC-CeEE----------------------EEEeeCCCCCChHHHHHHHHHHHHHHHHhhcc
Q 006381 200 NVLIFDLGGGTFDVSLLTIEE-GIFE----------------------VKATAGDTHLGGEDFDNRMVNHFVQEFKRKHK 256 (647)
Q Consensus 200 ~vlV~D~GggT~dvsv~~~~~-~~~~----------------------v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~ 256 (647)
++|++|+|.||.|+-.+.-.. +.+. -+...| ..+||--.++++.+++.. +
T Consensus 2 kila~DvG~GTqDi~~~d~~~EnSl~mVmPspt~~~A~R~R~~~~~g~~l~l~G-~~MGGGp~travrrhlk~------G 74 (342)
T COG4012 2 KILAIDVGVGTQDIVAYDGDPENSLRMVMPSPTSTLAQRLRFMLREGPYLALIG-VPMGGGPTTRAVRRHLKK------G 74 (342)
T ss_pred ceEEEEecCCceeEEEecCCcccceeEeecCchHHHHHHHHHHhccCCcEEEEe-eecCCChhhHHHHHHHhc------C
Confidence 579999999999998875321 0111 112222 467888889999888843 2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Q 006381 257 KDISGNPRALRRLRTSCERAKRT 279 (647)
Q Consensus 257 ~~~~~~~~~~~~L~~~~e~~K~~ 279 (647)
..+-..+.+...+....|+.++.
T Consensus 75 ~rVyatedAAlT~hddleRv~em 97 (342)
T COG4012 75 TRVYATEDAALTLHDDLERVEEM 97 (342)
T ss_pred CeeEechhhhhhhhcCHHHHHhh
Confidence 22223344444555555555543
No 176
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=41.54 E-value=1.2e+02 Score=30.32 Aligned_cols=54 Identities=30% Similarity=0.433 Sum_probs=33.9
Q ss_pred CCCCeEEEEcCCCCcHHH----HHHHHhhhCC----cccc--CCCCchhhHHhHHHHHHHHHcC
Q 006381 335 SSVHDVVLVGGSTRIPKV----QQLLQDFFNG----KELC--KSINPDEAVAYGAAVQAAILSG 388 (647)
Q Consensus 335 ~~i~~ViLvGG~s~~p~v----~~~l~~~f~~----~~v~--~~~~p~~ava~GAa~~a~~~~~ 388 (647)
...+.|+|.|-++++|.+ ++.|++.|.. ..+. -..--..-.|.|||+.|.-+.|
T Consensus 272 ~~pd~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~KeaA~GaAiiAnaiAG 335 (374)
T COG2441 272 TYPDAIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKEAAEGAAIIANAIAG 335 (374)
T ss_pred cCcceEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhhhccchhhhhhhhcc
Confidence 346789999999998665 5566666621 1221 1112223568899998876665
No 177
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=41.08 E-value=77 Score=29.73 Aligned_cols=55 Identities=11% Similarity=0.291 Sum_probs=26.4
Q ss_pred HHHHHHHhhccchhhcCCCCHHHHHHHHHHHHHHHHHHhcCC--ccCHHHHHHHHHHHHHHHHHHH
Q 006381 550 NYAYNMRNTVKDEKIGSKLAPADKKKIEDAIDQAIQWLDSNQ--LAEADEFEDKMKELESICNPII 613 (647)
Q Consensus 550 ~~i~~~r~~l~~~~~~~~~~~~~~~~i~~~l~~~~~wl~~~~--~~~~~~~~~k~~~l~~~~~~i~ 613 (647)
+|+.+++..|+. ++++|++ +.++.+++++++.. ..+.++.-+++-.=+++...+.
T Consensus 5 efL~~L~~~L~~------lp~~e~~---e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~ 61 (181)
T PF08006_consen 5 EFLNELEKYLKK------LPEEERE---EILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREIL 61 (181)
T ss_pred HHHHHHHHHHHc------CCHHHHH---HHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHH
Confidence 345555555432 3444443 33555566665532 1345555555555555555444
No 178
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=40.92 E-value=4.1e+02 Score=27.05 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHhcC---CccCHHHHHHHHHHHHHHHHHHHHHHhccc
Q 006381 574 KKIEDAIDQAIQWLDSN---QLAEADEFEDKMKELESICNPIIAKMYQGA 620 (647)
Q Consensus 574 ~~i~~~l~~~~~wl~~~---~~~~~~~~~~k~~~l~~~~~~i~~r~~e~~ 620 (647)
..+...++....-+.+- -..-+.+|..-+..|+.+.+.|-.+..-+.
T Consensus 186 ~~~t~~le~qk~tv~~Leaev~~~K~~Y~~slrnLE~ISd~IHeeRssqs 235 (426)
T KOG2008|consen 186 AKYTVQLEQQKKTVDDLEAEVTLAKGEYKMSLRNLEMISDEIHEERSSQS 235 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhhhh
Confidence 34444444444444332 112566899999999999999987666634
No 179
>PLN02902 pantothenate kinase
Probab=40.68 E-value=1.8e+02 Score=34.32 Aligned_cols=50 Identities=12% Similarity=-0.012 Sum_probs=32.0
Q ss_pred CCCCeEEEEcCCCCc-HHHHHHHHh---hh--CCccccCCCCchhhHHhHHHHHHH
Q 006381 335 SSVHDVVLVGGSTRI-PKVQQLLQD---FF--NGKELCKSINPDEAVAYGAAVQAA 384 (647)
Q Consensus 335 ~~i~~ViLvGG~s~~-p~v~~~l~~---~f--~~~~v~~~~~p~~ava~GAa~~a~ 384 (647)
..++.|+++|.+-|- |...+.|.. ++ +..+....-+-...-|+||.+...
T Consensus 345 ~~ikrIvF~G~fIr~h~~tm~~ls~Ai~fwSkg~~~a~FlrHeGylGAlGafl~~~ 400 (876)
T PLN02902 345 FGLKRIFFGGFFIRGHAYTMDTISFAVHFWSKGEAQAMFLRHEGFLGALGAFMSYE 400 (876)
T ss_pred cCCCEEEEecceecCCcchHHHHHHHHHHhcCCceEEEEecccchhHHHHHHhcCC
Confidence 458899999998653 333343433 33 234555666777889999986543
No 180
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=40.41 E-value=1.7e+02 Score=29.34 Aligned_cols=16 Identities=6% Similarity=0.177 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHhc
Q 006381 574 KKIEDAIDQAIQWLDS 589 (647)
Q Consensus 574 ~~i~~~l~~~~~wl~~ 589 (647)
......|.++++||.+
T Consensus 188 ~~~~~kL~Dl~~~l~e 203 (264)
T PF06008_consen 188 NDYNAKLQDLRDLLNE 203 (264)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 181
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=39.65 E-value=72 Score=36.07 Aligned_cols=62 Identities=29% Similarity=0.506 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhhccchhhcCCCCHHHHHHHHHHHHHHHHHHhcCC---c-----c---CHHHHHHHHHHHHHHHHHH
Q 006381 544 AKNALENYAYNMRNTVKDEKIGSKLAPADKKKIEDAIDQAIQWLDSNQ---L-----A---EADEFEDKMKELESICNPI 612 (647)
Q Consensus 544 a~n~lE~~i~~~r~~l~~~~~~~~~~~~~~~~i~~~l~~~~~wl~~~~---~-----~---~~~~~~~k~~~l~~~~~~i 612 (647)
+..+|+..|..+|..+++ +..+....+++.+.|++... + + ..++...+.++|.+.+.+|
T Consensus 653 ~~d~~~~~i~~~r~~~~~----------~~~k~~~~~~~a~kw~~~~~~~q~~~~~t~~pv~~~e~~~~~~~l~~~~~~i 722 (727)
T KOG0103|consen 653 AFDELGKKIQEIRKAIES----------EMEKVLLEIEEAEKWLERKSNKQNKLSKTADPVPSSEIESEAKELNNTCSDI 722 (727)
T ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCchHHHHHhhhhhccccccc
Confidence 444555555555555432 66778888899999998641 1 1 3489999999999999998
Q ss_pred HHH
Q 006381 613 IAK 615 (647)
Q Consensus 613 ~~r 615 (647)
..+
T Consensus 723 ~~~ 725 (727)
T KOG0103|consen 723 ISK 725 (727)
T ss_pred ccc
Confidence 764
No 182
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=39.32 E-value=1.3e+02 Score=29.95 Aligned_cols=28 Identities=11% Similarity=0.227 Sum_probs=17.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHh-hccc
Q 006381 534 EDEEHKKKVEAKNALENYAYNMRN-TVKD 561 (647)
Q Consensus 534 ~d~~~~~~~~a~n~lE~~i~~~r~-~l~~ 561 (647)
..+..+.|..-.-+|.+-+++||+ +|++
T Consensus 80 s~~~l~dRetEI~eLksQL~RMrEDWIEE 108 (305)
T PF15290_consen 80 SENRLHDRETEIDELKSQLARMREDWIEE 108 (305)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556678888888884 4544
No 183
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=39.01 E-value=1.9e+02 Score=23.76 Aligned_cols=67 Identities=21% Similarity=0.321 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhhhhc--hHHHHHHHHHHHHHHHHHHHHHhhccchhhcCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 006381 519 DEIEKMVQEAEKYKSE--DEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLAPADKKKIEDAIDQAIQWLDSNQ 591 (647)
Q Consensus 519 ~e~~~~~~~~~~~~~~--d~~~~~~~~a~n~lE~~i~~~r~~l~~~~~~~~~~~~~~~~i~~~l~~~~~wl~~~~ 591 (647)
+++..++..++.+... +.-.....+++..+++.+..+|+.+.+- ...-++..++....+++++.+++
T Consensus 5 ~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~------~~~~~~~~~~~~~~~~~~V~e~P 73 (94)
T PF05957_consen 5 AELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDA------ADQAREQAREAAEQTEDYVRENP 73 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHCh
Confidence 4556666655554322 3333445667777777777777777541 22344566667777777777664
No 184
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=38.41 E-value=83 Score=25.76 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHhcccC
Q 006381 603 KELESICNPIIAKMYQGAG 621 (647)
Q Consensus 603 ~~l~~~~~~i~~r~~e~~~ 621 (647)
++|+..++.|..|+..+..
T Consensus 46 ~eL~~~FeeIa~RFrk~~~ 64 (92)
T PF07820_consen 46 AELQAAFEEIAARFRKGKK 64 (92)
T ss_pred HHHHHHHHHHHHHHhcccc
Confidence 5677788888888877653
No 185
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=38.22 E-value=51 Score=34.67 Aligned_cols=46 Identities=22% Similarity=0.109 Sum_probs=31.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHhhhCC-ccccCCC--CchhhHHhHHHH
Q 006381 336 SVHDVVLVGGSTRIPKVQQLLQDFFNG-KELCKSI--NPDEAVAYGAAV 381 (647)
Q Consensus 336 ~i~~ViLvGG~s~~p~v~~~l~~~f~~-~~v~~~~--~p~~ava~GAa~ 381 (647)
+++.|++.||.+..+.+++.|.+.+.- .+|..-. +-.++.|.||..
T Consensus 293 ~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg~~e~~ala~ga~r 341 (351)
T TIGR02707 293 KVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPGEDEMEALAEGALR 341 (351)
T ss_pred CCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCCcHHHHHHHHhHHH
Confidence 479999999999999999999888732 2332222 234567777653
No 186
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=38.17 E-value=12 Score=40.21 Aligned_cols=51 Identities=24% Similarity=0.369 Sum_probs=39.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHhhhCC-----cc------c---cCCCCchhhHHhHHHHHHHHHc
Q 006381 337 VHDVVLVGGSTRIPKVQQLLQDFFNG-----KE------L---CKSINPDEAVAYGAAVQAAILS 387 (647)
Q Consensus 337 i~~ViLvGG~s~~p~v~~~l~~~f~~-----~~------v---~~~~~p~~ava~GAa~~a~~~~ 387 (647)
-+.|.+|||+...|.+...|++..-. .+ | -+..||...+=+|||++|..-.
T Consensus 527 ~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~ 591 (618)
T KOG0797|consen 527 FSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDF 591 (618)
T ss_pred hhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHHH
Confidence 56899999999999999999987621 11 1 2336888888999999987654
No 187
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=37.26 E-value=4.8e+02 Score=26.87 Aligned_cols=46 Identities=22% Similarity=0.335 Sum_probs=33.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHhhhC--CccccCCC---CchhhHHhHHHH
Q 006381 336 SVHDVVLVGGSTRIPKVQQLLQDFFN--GKELCKSI---NPDEAVAYGAAV 381 (647)
Q Consensus 336 ~i~~ViLvGG~s~~p~v~~~l~~~f~--~~~v~~~~---~p~~ava~GAa~ 381 (647)
.++.|+|.||.+...++++.|.+.+. +.++..+. -.|.+++.|+|=
T Consensus 259 ~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~ag 309 (314)
T TIGR03723 259 GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAAG 309 (314)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHHH
Confidence 46789999999999999999998872 12332222 346778887763
No 188
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=37.13 E-value=2.1e+02 Score=29.56 Aligned_cols=201 Identities=17% Similarity=0.193 Sum_probs=93.7
Q ss_pred HHcCCceeEecChhHHHHhccccccc--------ccCCCCeeEEEEEeCCCceEEEEEEEeCCeEEEEEee-CCCCCCh-
Q 006381 167 VIAGLNVMRIINEPTAAAIAYGLDKK--------ATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATA-GDTHLGG- 236 (647)
Q Consensus 167 ~~AGl~~~~li~Ep~Aaa~~y~~~~~--------~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~-~~~~lGG- 236 (647)
+..|++.+.++|+=+|.|+....-.. .........+|+-.|.| +-++.+--.++...++.+. |...+.-
T Consensus 88 ~~lg~~~v~liNDfeA~a~gl~~L~~~~l~~l~~g~~~~~~~~~Vig~GTG-LG~a~l~~~~~~~~v~~sEgGH~~fap~ 166 (316)
T PF02685_consen 88 QRLGIPRVRLINDFEAQAYGLPALDPEDLVTLQPGEPDPGGPRAVIGPGTG-LGVALLVPDGDGYYVLPSEGGHVDFAPR 166 (316)
T ss_dssp CCCT-TCEEEEEHHHHHHHHHHHHHHCCECCHCCEESSTTS-EEEEEESSS-EEEEEEEEETTEEEEEEE-GGGSB---S
T ss_pred HHhCCceEEEEcccchheeccCCCCHHHeeeccCCCCCCCCcEEEEEcCCC-cEEEEEEecCCceEeCCCccccccCCCC
Confidence 34588899999999998876421111 11134667899999865 4555554455555577665 4344443
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCcEEEEEccccCCceeEEeecHHHH---HHHHH
Q 006381 237 EDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYSPITRARF---EELNM 313 (647)
Q Consensus 237 ~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~d~~~~itr~~f---e~~~~ 313 (647)
.+.+..|.+++.+++..-.-.+ -.+-+-+.+|.+.....+ . ..... .-.-.|++.-. ..+|.
T Consensus 167 ~~~e~~l~~~l~~~~~~vs~E~-vlSG~GL~~ly~~l~~~~---~-~~~~~----------~~~~~I~~~A~~~~d~~a~ 231 (316)
T PF02685_consen 167 TDEEAELLRFLRRRYGRVSVER-VLSGRGLENLYRFLAGER---G-AEPPL----------LSAAEISAAALEGGDPLAR 231 (316)
T ss_dssp SHHHHHHHHHHHHHCTS-BHHH-CSSHHHHHHHHHHHHCCT---T---S--------------HHHHHHHHHCT--HHHH
T ss_pred CHHHHHHHHHHHHhcCCceeEe-ecchhhHHHHHHHHHhcc---C-CCCCC----------CCHHHHHHHHHcCCCHHHH
Confidence 4567788888887662111001 112233334433322111 0 00000 00012333322 23444
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCC-CcH-HHH-HHHHhhh----------CCccccCCCCchhhHHhHHH
Q 006381 314 DLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGST-RIP-KVQ-QLLQDFF----------NGKELCKSINPDEAVAYGAA 380 (647)
Q Consensus 314 ~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p-~v~-~~l~~~f----------~~~~v~~~~~p~~ava~GAa 380 (647)
..++.+...+-+...+.-+....-..|+|.||-+ +++ +++ +.+.+.| ...++....|++ +.-+||+
T Consensus 232 ~al~~f~~~lg~~agdlaL~~~a~gGvyiaGGI~~~~~~~l~~~~F~~~F~~kg~~~~~l~~iPv~li~~~~-~gL~Gaa 310 (316)
T PF02685_consen 232 EALDLFARILGRVAGDLALTFLARGGVYIAGGIAPRLLPLLDESAFREAFEDKGRMSDLLEDIPVYLITDPD-AGLLGAA 310 (316)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCEEEEE-TTGGGGHHHHHCSSHHHHHH--GGGHHHHTT--EEEE--S--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeeEEEecchhhHHHHHcChhHHHHHHhccCCcHHHHhcCcEEEEeCCC-HHHHHHH
Confidence 5555555554444444333222346899999986 333 222 1222333 223444444444 7778998
Q ss_pred HHHH
Q 006381 381 VQAA 384 (647)
Q Consensus 381 ~~a~ 384 (647)
.++.
T Consensus 311 ~~a~ 314 (316)
T PF02685_consen 311 AYAR 314 (316)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8875
No 189
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=36.93 E-value=1.1e+02 Score=32.83 Aligned_cols=45 Identities=24% Similarity=0.338 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHH
Q 006381 309 EELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQ 353 (647)
Q Consensus 309 e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~ 353 (647)
+++-.-+++.+-..+.+.+.+++.++.+|..++++|-++..-++.
T Consensus 56 ~~L~~~i~~~i~~li~~l~~~~gi~~~~I~~i~i~GNt~M~hLll 100 (412)
T PF14574_consen 56 EELQRLIRETINELIEELLEKAGISPEDIYEIVIVGNTTMLHLLL 100 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT--GGGEEEEEEEE-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEecHHHHHHHc
Confidence 444455567777888888999999999999999999655444443
No 190
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=36.47 E-value=51 Score=31.74 Aligned_cols=29 Identities=28% Similarity=0.544 Sum_probs=24.3
Q ss_pred CCeeEEEEEeCCCceEEEEEEEeCC-eEEE
Q 006381 197 GEKNVLIFDLGGGTFDVSLLTIEEG-IFEV 225 (647)
Q Consensus 197 ~~~~vlV~D~GggT~dvsv~~~~~~-~~~v 225 (647)
+...+|++|+||.++-|..+++.++ .+++
T Consensus 61 E~G~~LalDlGGTnlRv~~V~L~g~~~~~~ 90 (206)
T PF00349_consen 61 EKGDFLALDLGGTNLRVALVELSGNGKVEI 90 (206)
T ss_dssp TEEEEEEEEESSSSEEEEEEEEESSSEEEE
T ss_pred CCceEEEEeecCcEEEEEEEEEcCCCCcee
Confidence 4567999999999999999999876 4443
No 191
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=35.82 E-value=23 Score=31.30 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=15.0
Q ss_pred EEEecCccceEEEEEEC
Q 006381 10 IGIDLGTTYSCVGVWQH 26 (647)
Q Consensus 10 vGID~GTt~s~va~~~~ 26 (647)
+|||+|+..+++|+.++
T Consensus 1 laiD~G~kriGvA~~d~ 17 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDI 17 (130)
T ss_pred CeEccCCCeEEEEEECC
Confidence 59999999999998754
No 192
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=34.70 E-value=1.7e+02 Score=22.26 Aligned_cols=43 Identities=14% Similarity=0.139 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhhccchhhcCCCCHHHHHHHHHHHHHHHHHH
Q 006381 545 KNALENYAYNMRNTVKDEKIGSKLAPADKKKIEDAIDQAIQWL 587 (647)
Q Consensus 545 ~n~lE~~i~~~r~~l~~~~~~~~~~~~~~~~i~~~l~~~~~wl 587 (647)
...++..|-.+...|.++.|....+++-++.-+..+.++..=+
T Consensus 13 l~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~ 55 (66)
T PF10458_consen 13 LEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEEL 55 (66)
T ss_dssp HHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHH
Confidence 3467777888888898888888888877777666665554433
No 193
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=34.06 E-value=3.2e+02 Score=31.50 Aligned_cols=54 Identities=19% Similarity=0.312 Sum_probs=44.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCc------------cCHHHHHHHHHHHHHHHHHHHHHHhccc
Q 006381 567 KLAPADKKKIEDAIDQAIQWLDSNQL------------AEADEFEDKMKELESICNPIIAKMYQGA 620 (647)
Q Consensus 567 ~~~~~~~~~i~~~l~~~~~wl~~~~~------------~~~~~~~~k~~~l~~~~~~i~~r~~e~~ 620 (647)
.++..++..|.+.+.+.-.|+.+..+ ...+++.+|.+.|+..+.-..+|+.-..
T Consensus 774 ~ft~~e~~~L~k~i~~t~~W~~~~~~~~~k~~k~edp~~k~kei~~K~k~Ldrev~~~lnK~k~~~ 839 (902)
T KOG0104|consen 774 IFTKTEIDTLEKVIAKTTAWLNDRLDLFEKKAKTEDPVLKVKEIEEKAKSLDREVLYLLNKLKIRK 839 (902)
T ss_pred chhhhhHHHHHHHHHHhHHHhhhhHHHHHhhhcccCccccHHHHHHHHHhhHHHHHHHHHHhhccC
Confidence 46888899999999999999986422 2778999999999999988888877643
No 194
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=34.02 E-value=35 Score=32.91 Aligned_cols=38 Identities=21% Similarity=0.229 Sum_probs=24.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCc---eeEecChhHHHHhccc
Q 006381 151 PAYFNDSQRQATKDAGVIAGLN---VMRIINEPTAAAIAYG 188 (647)
Q Consensus 151 Pa~~~~~qr~~l~~Aa~~AGl~---~~~li~Ep~Aaa~~y~ 188 (647)
|..-...-.+.+.+|....|++ ++.++|+.+|.-++.+
T Consensus 163 ~~~~G~dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~ 203 (206)
T PF00349_consen 163 SGVVGKDVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGA 203 (206)
T ss_dssp BTGTTSBHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHH
T ss_pred cCCCCCccchhHHHHHHHhcccCcceEEEEECCHHHhhhhh
Confidence 3333444556677777777775 5678999999876554
No 195
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=33.03 E-value=30 Score=35.33 Aligned_cols=43 Identities=30% Similarity=0.540 Sum_probs=26.5
Q ss_pred CceeEecChhHHHHhcccccccccCCCCeeEEEEEeCCCceEEEEEE
Q 006381 171 LNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLT 217 (647)
Q Consensus 171 l~~~~li~Ep~Aaa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~ 217 (647)
.++..+.+-|.|.+..... .. ...++++++|+||.|||++++.
T Consensus 53 ~Pv~ti~SGPaas~~ga~~-~~---~g~~~~i~vDmGGTTtDi~~i~ 95 (290)
T PF01968_consen 53 RPVETILSGPAASVIGAAA-RL---TGLENAIVVDMGGTTTDIALIK 95 (290)
T ss_dssp SGGCTB--SSHHHHHHHHH------HT-SSEEEEEE-SS-EEEEEEE
T ss_pred hHHHHhhcCHHHhHhhhhh-hc---CCCCCEEEEeCCCCEEEEEEEE
Confidence 3455677778777665444 11 1345799999999999999985
No 196
>PF09921 DUF2153: Uncharacterized protein conserved in archaea (DUF2153); InterPro: IPR014450 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=33.00 E-value=3.3e+02 Score=23.70 Aligned_cols=100 Identities=15% Similarity=0.177 Sum_probs=68.7
Q ss_pred HHHHHHHHHhhhhchHHHHH--HHHHHHHHHHHHHHHHhhccchhhcCCCCHHHHHHHHHHHHHHHHHHhcCCccCHHHH
Q 006381 521 IEKMVQEAEKYKSEDEEHKK--KVEAKNALENYAYNMRNTVKDEKIGSKLAPADKKKIEDAIDQAIQWLDSNQLAEADEF 598 (647)
Q Consensus 521 ~~~~~~~~~~~~~~d~~~~~--~~~a~n~lE~~i~~~r~~l~~~~~~~~~~~~~~~~i~~~l~~~~~wl~~~~~~~~~~~ 598 (647)
++.+++-.+.++..|+..-. ...|.+.....|-..-+.|.++-....++.+-...+++.+-++-.=|-+-.-..+++|
T Consensus 13 l~~~~~~e~~~~~~DRL~LIl~sr~afqhm~RTlKaFd~WLqdP~ItshMPreML~dv~~~~~~il~~llelDI~HTS~~ 92 (126)
T PF09921_consen 13 LETFKKHEKNVESADRLDLILSSRAAFQHMMRTLKAFDQWLQDPMITSHMPREMLEDVWETLREILEQLLELDIRHTSQF 92 (126)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHhcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33444445566666765432 3446777778888888889888778889988888888887776555544323456778
Q ss_pred HHHHHHHHH--HHHHHHHHHhccc
Q 006381 599 EDKMKELES--ICNPIIAKMYQGA 620 (647)
Q Consensus 599 ~~k~~~l~~--~~~~i~~r~~e~~ 620 (647)
.+-+..|.+ .++|+...+.++.
T Consensus 93 rdll~kl~kEGkl~pll~~~~~~~ 116 (126)
T PF09921_consen 93 RDLLKKLAKEGKLNPLLWLYKQQG 116 (126)
T ss_pred HHHHHHHHHcCCCCHHHHhhcccc
Confidence 877777764 6789998888743
No 197
>PRK13326 pantothenate kinase; Reviewed
Probab=32.97 E-value=53 Score=32.99 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=19.9
Q ss_pred CCCEEEEecCccceEEEEEECCe
Q 006381 6 EGPAIGIDLGTTYSCVGVWQHDR 28 (647)
Q Consensus 6 ~~~vvGID~GTt~s~va~~~~g~ 28 (647)
-+..+.||.|+|+++++++++++
T Consensus 5 ~~~~L~IDiGNT~ik~glf~~~~ 27 (262)
T PRK13326 5 LSSQLIIDIGNTSISFALYKDNK 27 (262)
T ss_pred ccEEEEEEeCCCeEEEEEEECCE
Confidence 35689999999999999998764
No 198
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=32.68 E-value=64 Score=35.49 Aligned_cols=19 Identities=37% Similarity=0.503 Sum_probs=17.6
Q ss_pred CCEEEEecCccceEEEEEE
Q 006381 7 GPAIGIDLGTTYSCVGVWQ 25 (647)
Q Consensus 7 ~~vvGID~GTt~s~va~~~ 25 (647)
..++|||.|||++++++++
T Consensus 6 ~~~~gIDvGTtSaR~~v~~ 24 (516)
T KOG2517|consen 6 PVVLGIDVGTTSARALVFN 24 (516)
T ss_pred ceEEEEEcCCCceEEEEEe
Confidence 5799999999999999996
No 199
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=32.52 E-value=4.1e+02 Score=28.77 Aligned_cols=71 Identities=25% Similarity=0.354 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhhhhc----hHHHHHHHHHHHHHHHHHHHHHhhccch-----hhcC--CCCHHHHHHHHHHHHHHHHH
Q 006381 518 KDEIEKMVQEAEKYKSE----DEEHKKKVEAKNALENYAYNMRNTVKDE-----KIGS--KLAPADKKKIEDAIDQAIQW 586 (647)
Q Consensus 518 ~~e~~~~~~~~~~~~~~----d~~~~~~~~a~n~lE~~i~~~r~~l~~~-----~~~~--~~~~~~~~~i~~~l~~~~~w 586 (647)
.+++.+.++.++++.+. ++..++...--|.+++|+..|+.+.++. .++. ...+++.+.++...+++..-
T Consensus 280 n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q 359 (622)
T COG5185 280 NDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQ 359 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34555566655555443 5566666667899999999999887541 1111 12345555666666665555
Q ss_pred Hh
Q 006381 587 LD 588 (647)
Q Consensus 587 l~ 588 (647)
+.
T Consensus 360 ~~ 361 (622)
T COG5185 360 LR 361 (622)
T ss_pred HH
Confidence 54
No 200
>PRK11546 zraP zinc resistance protein; Provisional
Probab=32.47 E-value=3.8e+02 Score=24.17 Aligned_cols=42 Identities=7% Similarity=0.161 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006381 513 KGRLSKDEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTVK 560 (647)
Q Consensus 513 ~~~ls~~e~~~~~~~~~~~~~~d~~~~~~~~a~n~lE~~i~~~r~~l~ 560 (647)
...||+|+...+.+...+|..+= .+.|.+|-+--++++..+.
T Consensus 41 ~~~LT~EQQa~~q~I~~~f~~~t------~~LRqqL~aKr~ELnALl~ 82 (143)
T PRK11546 41 AAPLTTEQQAAWQKIHNDFYAQT------SALRQQLVSKRYEYNALLT 82 (143)
T ss_pred cccCCHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHc
Confidence 34699999887776666664432 2333333333355555554
No 201
>COG4296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.87 E-value=79 Score=27.69 Aligned_cols=21 Identities=19% Similarity=0.653 Sum_probs=16.2
Q ss_pred HHHHHhcCCc-cCHHHHHHHHH
Q 006381 583 AIQWLDSNQL-AEADEFEDKMK 603 (647)
Q Consensus 583 ~~~wl~~~~~-~~~~~~~~k~~ 603 (647)
.++||++++. -|.++|+++..
T Consensus 91 nE~WleEDe~~iTpE~fk~Rm~ 112 (156)
T COG4296 91 NEDWLEEDEQPITPESFKERMA 112 (156)
T ss_pred hhhhhhccCCccCHHHHHHHhh
Confidence 4679998854 69999988754
No 202
>PLN02377 3-ketoacyl-CoA synthase
Probab=31.77 E-value=1.2e+02 Score=33.47 Aligned_cols=54 Identities=4% Similarity=0.153 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEE-EcCCCCcHHHHHHHHhhhC
Q 006381 308 FEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVL-VGGSTRIPKVQQLLQDFFN 361 (647)
Q Consensus 308 fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViL-vGG~s~~p~v~~~l~~~f~ 361 (647)
++...++...-+...++++|+++++++.+|+.|+. +.+....|.+--+|.+.++
T Consensus 165 ~~~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LG 219 (502)
T PLN02377 165 MAAAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYK 219 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhC
Confidence 44444455555667888999999999999999877 4555568999999999994
No 203
>PRK00292 glk glucokinase; Provisional
Probab=30.87 E-value=45 Score=34.40 Aligned_cols=44 Identities=23% Similarity=0.197 Sum_probs=27.7
Q ss_pred HHcCCceeEecChhHHHHhcccccc-------cccCC-CCeeEEEEEeCCCc
Q 006381 167 VIAGLNVMRIINEPTAAAIAYGLDK-------KATSV-GEKNVLIFDLGGGT 210 (647)
Q Consensus 167 ~~AGl~~~~li~Ep~Aaa~~y~~~~-------~~~~~-~~~~vlV~D~GggT 210 (647)
+..|++.+.+.|+-.|+|++-.... ..... ....++++-+|.|-
T Consensus 88 ~~~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTGi 139 (316)
T PRK00292 88 QELGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTGL 139 (316)
T ss_pred HHhCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCcc
Confidence 3458877899999999998753310 11000 13567888888664
No 204
>PLN03170 chalcone synthase; Provisional
Probab=30.84 E-value=1.5e+02 Score=31.75 Aligned_cols=50 Identities=14% Similarity=0.232 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCC-CcHHHHHHHHhhhC
Q 006381 312 NMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGST-RIPKVQQLLQDFFN 361 (647)
Q Consensus 312 ~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~v~~~l~~~f~ 361 (647)
.+...+-..+..+++|+++++++.+|+.|+.+-.+. .+|.+--.|.+.++
T Consensus 103 ~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LG 153 (401)
T PLN03170 103 VVEVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLG 153 (401)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhC
Confidence 334455566788999999999999999988766544 69999999999994
No 205
>PLN02939 transferase, transferring glycosyl groups
Probab=30.71 E-value=2.8e+02 Score=33.33 Aligned_cols=74 Identities=19% Similarity=0.176 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHhhccc-hhhcCCCCHHHHHHHHHHHHHHHHHHhc
Q 006381 516 LSKDEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLAPADKKKIEDAIDQAIQWLDS 589 (647)
Q Consensus 516 ls~~e~~~~~~~~~~~~~~d~~~~~~~~a~n~lE~~i~~~r~~l~~-~~~~~~~~~~~~~~i~~~l~~~~~wl~~ 589 (647)
+=++.++.++.++.+..+-|+.......-+.-|++++.++..++.. .+-...+.+-+.+.++++++.++..|+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (977)
T PLN02939 237 LLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDR 311 (977)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHH
Confidence 3467788888888888888888877777888899999999888732 1122334444555677777777777764
No 206
>PLN03173 chalcone synthase; Provisional
Probab=30.65 E-value=1.8e+02 Score=31.18 Aligned_cols=48 Identities=17% Similarity=0.262 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCC-CcHHHHHHHHhhhC
Q 006381 314 DLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGST-RIPKVQQLLQDFFN 361 (647)
Q Consensus 314 ~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~v~~~l~~~f~ 361 (647)
...+-..+.++++|+++++++.+|+.|+.+.-+. ..|.+--.|.+.++
T Consensus 101 ~a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LG 149 (391)
T PLN03173 101 EVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLG 149 (391)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhC
Confidence 4445556778999999999999999998876544 58999999999983
No 207
>PRK13320 pantothenate kinase; Reviewed
Probab=30.20 E-value=58 Score=32.33 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=18.5
Q ss_pred CEEEEecCccceEEEEEECCe
Q 006381 8 PAIGIDLGTTYSCVGVWQHDR 28 (647)
Q Consensus 8 ~vvGID~GTt~s~va~~~~g~ 28 (647)
.++.||.|+|+++.++++++.
T Consensus 3 M~L~iDiGNT~ik~~~~~~~~ 23 (244)
T PRK13320 3 MNLVIDIGNTTTKLAVFEGDE 23 (244)
T ss_pred eEEEEEeCCCcEEEEEEECCE
Confidence 489999999999999998664
No 208
>PLN03172 chalcone synthase family protein; Provisional
Probab=29.75 E-value=1.8e+02 Score=31.15 Aligned_cols=53 Identities=15% Similarity=0.249 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCC-CcHHHHHHHHhhhC
Q 006381 309 EELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGST-RIPKVQQLLQDFFN 361 (647)
Q Consensus 309 e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~v~~~l~~~f~ 361 (647)
+...+...+-..+..+++|+++++++.+|+.|+++-.+. .+|.+--.|.+.++
T Consensus 96 ~~~~~~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LG 149 (393)
T PLN03172 96 DMVVVEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLG 149 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhC
Confidence 333344455566778999999999999999998766554 69999999999994
No 209
>PLN00130 succinate dehydrogenase (SDH3); Provisional
Probab=29.70 E-value=7.3 Score=35.71 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=17.4
Q ss_pred CCEEEEecCccceEEEEEECC
Q 006381 7 GPAIGIDLGTTYSCVGVWQHD 27 (647)
Q Consensus 7 ~~vvGID~GTt~s~va~~~~g 27 (647)
.-++|+|+||+|++++..++.
T Consensus 57 ~d~~g~~~gt~n~~~~~~e~~ 77 (213)
T PLN00130 57 NDILGTGLGTNNAIREEREKS 77 (213)
T ss_pred cceeccCCCcchHHHHHHhcc
Confidence 458999999999999887543
No 210
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=28.77 E-value=3.6e+02 Score=22.83 Aligned_cols=61 Identities=16% Similarity=0.237 Sum_probs=36.5
Q ss_pred eEEeeeccCCCCcEEEEEeecccccccCCccceeEEecCCCCCCCCCCeeEEEEEEcC--CceEEEEE
Q 006381 431 EQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDA--NGILNVSA 496 (647)
Q Consensus 431 ~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~~~~d~--~g~l~v~~ 496 (647)
+..|....+....+.|.+|.-+.. .+..||++.+. +.....|. .....|.+.. .|.|.++.
T Consensus 53 ~f~f~i~~~~~~~l~v~v~d~d~~---~~~~iG~~~~~-l~~l~~g~-~~~~~~~L~~~~~g~l~~~~ 115 (119)
T cd04036 53 TFEFRIQSQVKNVLELTVMDEDYV---MDDHLGTVLFD-VSKLKLGE-KVRVTFSLNPQGKEELEVEF 115 (119)
T ss_pred EEEEEeCcccCCEEEEEEEECCCC---CCcccEEEEEE-HHHCCCCC-cEEEEEECCCCCCceEEEEE
Confidence 344443333344578888875543 56789999876 44333443 3666777665 37776654
No 211
>PLN03184 chloroplast Hsp70; Provisional
Probab=27.63 E-value=5.3e+02 Score=29.89 Aligned_cols=37 Identities=22% Similarity=0.280 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHhcC----CccCHHHHHHHHHHHHH
Q 006381 571 ADKKKIEDAIDQAIQWLDSN----QLAEADEFEDKMKELES 607 (647)
Q Consensus 571 ~~~~~i~~~l~~~~~wl~~~----~~~~~~~~~~k~~~l~~ 607 (647)
+.+++++..+..++++|.+. ...+.+++.+.++++++
T Consensus 566 eakN~lE~~iy~~r~~l~e~~~~~~~eer~~l~~~l~~~e~ 606 (673)
T PLN03184 566 DTKNQADSVVYQTEKQLKELGDKVPADVKEKVEAKLKELKD 606 (673)
T ss_pred HHHHhHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHH
Confidence 34555666666666666421 11244455555555543
No 212
>PF07865 DUF1652: Protein of unknown function (DUF1652); InterPro: IPR012448 The proteins in this entry have not been characterised.
Probab=26.99 E-value=2e+02 Score=22.29 Aligned_cols=49 Identities=20% Similarity=0.340 Sum_probs=32.3
Q ss_pred eEEEEEEcCCceEEEEEeeccCCcceeEEEec--CCCCCCHHHHHHHHHHHH
Q 006381 480 ITVCFDIDANGILNVSAEDKTTGQKNKITITN--DKGRLSKDEIEKMVQEAE 529 (647)
Q Consensus 480 i~v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~--~~~~ls~~e~~~~~~~~~ 529 (647)
....++++.+|.++|...+..+|.. .++++- -..-.|..+|.+++.+++
T Consensus 15 l~C~ct~~~~~smtvrl~d~~sg~~-~l~vtGI~~~~l~s~rdI~~LI~eLr 65 (69)
T PF07865_consen 15 LRCECTIAPDGSMTVRLFDPASGRV-ELTVTGISTSALNSSRDIVRLIAELR 65 (69)
T ss_pred ceeEEEECCCCcEEEEEecCCCCcE-EEEEcCcCHHHcCCHHHHHHHHHHHH
Confidence 6778899999999999999988865 233321 112245566666665443
No 213
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=26.91 E-value=1.1e+02 Score=25.87 Aligned_cols=45 Identities=20% Similarity=0.409 Sum_probs=30.8
Q ss_pred eeEEEEEEcCC-ceEEEEEeeccCCcceeEEEecCCCCCCHHHHHHHHHHHHhh
Q 006381 479 QITVCFDIDAN-GILNVSAEDKTTGQKNKITITNDKGRLSKDEIEKMVQEAEKY 531 (647)
Q Consensus 479 ~i~v~~~~d~~-g~l~v~~~~~~~~~~~~~~~~~~~~~ls~~e~~~~~~~~~~~ 531 (647)
...+.|.+|.+ |.+.|.+.+..||+... .+..+++-++.+++.++
T Consensus 54 ~~~l~F~vde~~~~~vVkViD~~T~eVIR--------qIP~Ee~l~l~~~l~e~ 99 (107)
T PF03646_consen 54 NTSLRFSVDEESGRVVVKVIDKETGEVIR--------QIPPEELLDLAKRLREL 99 (107)
T ss_dssp S--EEEEEEEETTEEEEEEEETTT-SEEE--------EE-HHHHHHHHHHHHHH
T ss_pred CCceEEEEecCCCcEEEEEEECCCCcEEE--------eCCcHHHHHHHHHHHHH
Confidence 36788999875 88999999999986522 26778887777666654
No 214
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=26.81 E-value=7.3e+02 Score=25.74 Aligned_cols=100 Identities=17% Similarity=0.200 Sum_probs=55.1
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHHcCCceeEecChhHHH--HhcccccccccCCCCeeEEEEEeCCCceEEEEEEEeCC
Q 006381 144 KNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAA--AIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEG 221 (647)
Q Consensus 144 ~~~ViTVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aa--a~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~ 221 (647)
....+|-|.--.+.-|.-+.+..-. -|++..+.- ..+| ||+.......-....-+=+|+|-|-|-+-+-.+ .++
T Consensus 107 h~fLlteppln~penreytaeImfE-sfnvpglyi-AVqavLALaaswts~~v~er~ltG~VidsGdgvThvipv--aEg 182 (415)
T KOG0678|consen 107 HYFLLTEPPLNQPENREYTAEIMFE-SFNVPGLYI-AVQAVLALAASWTSRQVGERFLTGIVIDSGDGVTHVIPV--AEG 182 (415)
T ss_pred ceEEecCCCCCCchhhHHHHHhhhh-hccCchHHH-HHHHHHHHHHHHHHhhhhhheeeeEEEecCCCeeEEEEe--ecc
Confidence 3468888888888888777654322 133332211 1222 222222222111123345799999998776554 233
Q ss_pred eEEEEEeeCCCCCChHHHHHHHHHHHH
Q 006381 222 IFEVKATAGDTHLGGEDFDNRMVNHFV 248 (647)
Q Consensus 222 ~~~v~~~~~~~~lGG~~~d~~l~~~l~ 248 (647)
+.+.+.-....+.|++++.-+...++
T Consensus 183 -yVigScik~iPiagrdiT~fiQ~llR 208 (415)
T KOG0678|consen 183 -YVIGSCIKHIPIAGRDITYFIQQLLR 208 (415)
T ss_pred -eEEeeeeccccccCCchhHHHHHHhh
Confidence 23334345688999999977766664
No 215
>KOG3133 consensus 40 kDa farnesylated protein associated with peroxisomes [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.65 E-value=2.1e+02 Score=28.47 Aligned_cols=59 Identities=14% Similarity=0.301 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhhccchhhcCCCCHHHHHHHHHHHHHHHHHHhcCCcc----CHHHHHHHHHHHHHHHHH
Q 006381 546 NALENYAYNMRNTVKDEKIGSKLAPADKKKIEDAIDQAIQWLDSNQLA----EADEFEDKMKELESICNP 611 (647)
Q Consensus 546 n~lE~~i~~~r~~l~~~~~~~~~~~~~~~~i~~~l~~~~~wl~~~~~~----~~~~~~~k~~~l~~~~~~ 611 (647)
+.||.++..+=+.|-+.+. + ..-++++...+=.||.+|... +.+-|++..+-++.++.+
T Consensus 142 g~le~~m~~iMqqllSKEI---L----yeplKEl~~~YPkwLeen~e~l~~E~~erYqkQ~~~i~~i~~~ 204 (267)
T KOG3133|consen 142 GDLEPIMESIMQQLLSKEI---L----YEPLKELGANYPKWLEENGESLSKEDKERYQKQFELIKEIESV 204 (267)
T ss_pred ccHHHHHHHHHHHHHHHHH---h----hhhHHHHHHHhhHHHHhcccccCHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666555543221 1 245788888888999988442 444555555544444433
No 216
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=26.62 E-value=7.6e+02 Score=25.88 Aligned_cols=222 Identities=16% Similarity=0.133 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCC---cEEEEeCCCCCHHHHHHHHHHHHHcCC--ceeEecChhHHHHhcccccccccC
Q 006381 121 EEISSMVLIKMREIAEAYLGSTVK---NAVVTVPAYFNDSQRQATKDAGVIAGL--NVMRIINEPTAAAIAYGLDKKATS 195 (647)
Q Consensus 121 ~ev~a~~L~~l~~~a~~~~~~~~~---~~ViTVPa~~~~~qr~~l~~Aa~~AGl--~~~~li~Ep~Aaa~~y~~~~~~~~ 195 (647)
.+.-..-+..+.+.+-...+..++ -+.+|+=....-.-+--++-|-..|+- +.+--++--+|-|+...+....
T Consensus 79 ~~~Hr~ni~~~iqral~aa~~~p~dldaIAVT~gPGl~lsL~vGl~fA~glA~~l~kPlipVHHMeAHAL~~rl~~~~-- 156 (405)
T KOG2707|consen 79 QLLHRENIPRLIQRALDAAGLSPKDLDAIAVTRGPGLPLSLKVGLSFAKGLAVKLQKPLIPVHHMEAHALSIRLVDDS-- 156 (405)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcccceeEEEecCCCceeehhhhHHHHHHHHHhccCCccchhHHHHhHHHHHhccCC--
Confidence 344455566666666555554444 457777777766666666666666643 2333455666767765554432
Q ss_pred CCCeeEEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHH
Q 006381 196 VGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCER 275 (647)
Q Consensus 196 ~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~ 275 (647)
-.-.++.+=+-||.+-+.+.+ .-+.+++++..-|.. =|+.||.. .++| +... ++......-+++|.
T Consensus 157 -v~FPFl~lLvSGGH~llvla~-~~~~~~llg~TvDiA-pGe~lDK~-ar~L--------gl~~--~~e~~~~~g~aie~ 222 (405)
T KOG2707|consen 157 -VRFPFLALLVSGGHTLLVLAN-GVGDHELLGQTVDIA-PGEALDKC-ARRL--------GLLG--HPEDARSGGKAIEH 222 (405)
T ss_pred -cCCceeeEeeeCCceEEEEec-cccceeeeecccccc-hHHHHHHH-HHHh--------cCCC--CccchhhhhhHHHH
Confidence 345677777778887776654 224667777665443 35666643 2222 2111 11111112222222
Q ss_pred HHHHcCCCCcEEEEEccccC---CceeEE--------------------eecHHHHH-HHHHHHHHHHHHHHHHHHHHcC
Q 006381 276 AKRTLSSTAQTTIEIDSLYE---GIDFYS--------------------PITRARFE-ELNMDLFRKCMEPVEKCLRDAK 331 (647)
Q Consensus 276 ~K~~Ls~~~~~~~~i~~~~~---~~d~~~--------------------~itr~~fe-~~~~~~~~~~~~~i~~~l~~~~ 331 (647)
.-..-|.... +..+.... .-+|++ ...+.+|- ++-...+..+.+....+++...
T Consensus 223 la~~~s~~~~--l~~piPL~~~~~~nFSFsglk~~~~~~i~k~~k~e~~~s~~~dfaa~lQ~tv~~Hi~~Kt~~ai~~~~ 300 (405)
T KOG2707|consen 223 LANRASADLH--LKFPIPLKNVKKCNFSFSGLKTSYRRIIEKLEKNEETLSEIADFAASLQRTVFRHISSKTHRAIKSLL 300 (405)
T ss_pred HHhccCcccc--ccCCCCccccccCCccHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2111111111 11111110 011111 11222221 1222345555666667777666
Q ss_pred CCCCCCCeEEEEcCCCCcHHHHHHHHhhh
Q 006381 332 MDKSSVHDVVLVGGSTRIPKVQQLLQDFF 360 (647)
Q Consensus 332 ~~~~~i~~ViLvGG~s~~p~v~~~l~~~f 360 (647)
+....+...++.||-++..+|+.+|+...
T Consensus 301 l~~~~~~~lV~SGGVAsN~yir~~le~l~ 329 (405)
T KOG2707|consen 301 LQPKNVKQLVISGGVASNQYIRGALEKLS 329 (405)
T ss_pred hcccCCceEEEcCCccchHHHHHHHHHHH
Confidence 66777889999999999999999999876
No 217
>KOG1386 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=26.49 E-value=8.9e+02 Score=26.60 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=18.8
Q ss_pred CCeeEEEEEeCCCceEEEEEEE
Q 006381 197 GEKNVLIFDLGGGTFDVSLLTI 218 (647)
Q Consensus 197 ~~~~vlV~D~GggT~dvsv~~~ 218 (647)
+..++-++|+||-++.|+..--
T Consensus 160 ~~~T~G~lDlGGAS~QItFe~~ 181 (501)
T KOG1386|consen 160 RKETFGALDLGGASTQITFEPP 181 (501)
T ss_pred CcceeeeEecCCceeEEEEecC
Confidence 5678999999999999997654
No 218
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=25.95 E-value=34 Score=37.48 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=14.5
Q ss_pred EEEecCccceEEEEEE
Q 006381 10 IGIDLGTTYSCVGVWQ 25 (647)
Q Consensus 10 vGID~GTt~s~va~~~ 25 (647)
+|||+|||+++++++.
T Consensus 1 ~aiD~Gtt~~k~~l~~ 16 (454)
T TIGR02627 1 VAVDLGASSGRVMLAS 16 (454)
T ss_pred CcEeccCCchheEEEE
Confidence 5899999999999885
No 219
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=25.44 E-value=2e+02 Score=29.11 Aligned_cols=69 Identities=25% Similarity=0.381 Sum_probs=46.4
Q ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHhhhCCccccCCCCchhh
Q 006381 302 PITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEA 374 (647)
Q Consensus 302 ~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~a 374 (647)
.++.++|++.+.|.+.+|++.+++-+.+.++.. +--|+..-|+... +.+.-..-+.-..+..+.+|.++
T Consensus 219 eLspe~f~e~s~PYl~~I~~~Vk~rl~~~~~~~--vPmi~fakG~g~~--Le~l~~tG~DVvgLDWTvdp~ea 287 (359)
T KOG2872|consen 219 ELSPEDFEEFSLPYLRQIAEAVKKRLPELGLAP--VPMILFAKGSGGA--LEELAQTGYDVVGLDWTVDPAEA 287 (359)
T ss_pred cCCHHHHHHhhhHHHHHHHHHHHHhhhhhcCCC--CceEEEEcCcchH--HHHHHhcCCcEEeecccccHHHH
Confidence 578999999999999999999999999876543 6677777666532 32222222211233455666554
No 220
>PLN03168 chalcone synthase; Provisional
Probab=24.85 E-value=2.3e+02 Score=30.36 Aligned_cols=54 Identities=15% Similarity=0.287 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCC-CCcHHHHHHHHhhhC
Q 006381 308 FEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGS-TRIPKVQQLLQDFFN 361 (647)
Q Consensus 308 fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~-s~~p~v~~~l~~~f~ 361 (647)
.+-..+...+-..+..+++|+++++++.+|+.|+.+-.+ -.+|.+--.|.+.++
T Consensus 94 ~~~~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LG 148 (389)
T PLN03168 94 HDIVVVQVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLLG 148 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHhC
Confidence 333344555556778899999999999999999875333 347999999999983
No 221
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=24.80 E-value=1.1e+02 Score=32.70 Aligned_cols=45 Identities=7% Similarity=0.091 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCC-CcHHHHHHHHhhhC
Q 006381 314 DLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGST-RIPKVQQLLQDFFN 361 (647)
Q Consensus 314 ~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~v~~~l~~~f~ 361 (647)
-.+.++...|-...... ...+|.|+++||-+ ..+.|++.|.+.+.
T Consensus 304 ~f~yri~k~Iga~~a~L---~g~vDaiVfTGGIgE~s~~lr~~I~~~l~ 349 (402)
T PRK00180 304 VFVYRLAKYIGSYAAAL---NGRLDAIVFTAGIGENSALVREKVLEGLE 349 (402)
T ss_pred HHHHHHHHHHHHHHHHh---cCCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 33444444444433332 13599999999999 99999999998773
No 222
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=24.64 E-value=4.1e+02 Score=29.90 Aligned_cols=102 Identities=14% Similarity=0.202 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHhhccchhhcCCCCHHHHHHHHHHHHHHHHHHhcC------
Q 006381 517 SKDEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLAPADKKKIEDAIDQAIQWLDSN------ 590 (647)
Q Consensus 517 s~~e~~~~~~~~~~~~~~d~~~~~~~~a~n~lE~~i~~~r~~l~~~~~~~~~~~~~~~~i~~~l~~~~~wl~~~------ 590 (647)
|..+.++++..++++.+.=..+.+...-++++++|-.++...-.. .+-++.+.....+.++++..=+..+
T Consensus 162 T~~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~----~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~ 237 (555)
T TIGR03545 162 TVETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKK----DIKNPLELQKIKEEFDKLKKEGKADKQKIKS 237 (555)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhc----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554444333222222222356677766666554332 3345665555555555544444321
Q ss_pred ----CccCHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 006381 591 ----QLAEADEFEDKMKELESICNPIIAKMYQGAGG 622 (647)
Q Consensus 591 ----~~~~~~~~~~k~~~l~~~~~~i~~r~~e~~~~ 622 (647)
-..+.+.++..+.+|++.-..=..|+.+..+.
T Consensus 238 ~~~~l~~~~~~~~~~~~~lk~ap~~D~~~L~~~~~~ 273 (555)
T TIGR03545 238 AKNDLQNDKKQLKADLAELKKAPQNDLKRLENKYAI 273 (555)
T ss_pred HHHHHHHhHHHHHHHHHHHHhccHhHHHHHHHHhCC
Confidence 11255566666666666655555666664433
No 223
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=24.59 E-value=4.4e+02 Score=26.32 Aligned_cols=17 Identities=18% Similarity=0.499 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006381 597 EFEDKMKELESICNPII 613 (647)
Q Consensus 597 ~~~~k~~~l~~~~~~i~ 613 (647)
+|..|+.+|+..++...
T Consensus 189 ~~~~kL~Dl~~~l~eA~ 205 (264)
T PF06008_consen 189 DYNAKLQDLRDLLNEAQ 205 (264)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444333
No 224
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=24.54 E-value=43 Score=36.87 Aligned_cols=16 Identities=38% Similarity=0.432 Sum_probs=14.8
Q ss_pred EEEecCccceEEEEEE
Q 006381 10 IGIDLGTTYSCVGVWQ 25 (647)
Q Consensus 10 vGID~GTt~s~va~~~ 25 (647)
||||+|||++++++++
T Consensus 1 lgIDiGtt~ik~~l~d 16 (481)
T TIGR01312 1 LGIDLGTSGVKALLVD 16 (481)
T ss_pred CceeecCcceEEEEEC
Confidence 6999999999999985
No 225
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=24.09 E-value=76 Score=31.45 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=16.9
Q ss_pred EEEecCccceEEEEEECCe
Q 006381 10 IGIDLGTTYSCVGVWQHDR 28 (647)
Q Consensus 10 vGID~GTt~s~va~~~~g~ 28 (647)
+.||.|+|+++++++++++
T Consensus 2 L~iDiGNT~i~~g~~~~~~ 20 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSGNK 20 (243)
T ss_pred EEEEECCCcEEEEEEECCE
Confidence 6799999999999998764
No 226
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=23.93 E-value=80 Score=33.76 Aligned_cols=30 Identities=33% Similarity=0.709 Sum_probs=24.5
Q ss_pred CCeeEEEEEeCCCceEEEEEEEe-CCeEEEE
Q 006381 197 GEKNVLIFDLGGGTFDVSLLTIE-EGIFEVK 226 (647)
Q Consensus 197 ~~~~vlV~D~GggT~dvsv~~~~-~~~~~v~ 226 (647)
+.+.+|++|+||..+-++.+++. ++.+++.
T Consensus 73 e~g~~LaiD~GGTnlRvc~V~l~g~gt~~~~ 103 (466)
T COG5026 73 ESGSVLAIDLGGTNLRVCLVVLGGDGTFDIE 103 (466)
T ss_pred CCCCEEEEecCCceEEEEEEEeCCCCCcccc
Confidence 56789999999999999999998 4444443
No 227
>PF00815 Histidinol_dh: Histidinol dehydrogenase; InterPro: IPR012131 Histidinol dehydrogenase (HDH) catalyzes the terminal step in the biosynthesis of histidine in bacteria, fungi, and plants, the four-electron oxidation of L-histidinol to histidine. In 4-electron dehydrogenases, a single active site catalyses 2 separate oxidation steps: oxidation of the substrate alcohol to an intermediate aldehyde; and oxidation of the aldehyde to the product acid, in this case His []. The reaction proceeds via a tightly- or covalently-bound inter-mediate, and requires the presence of 2 NAD molecules []. By contrast with most dehydrogenases, the substrate is bound before the NAD coenzyme []. A Cys residue has been implicated in the catalytic mechanism of the second oxidative step []. In bacteria HDH is a single chain polypeptide; in fungi it is the C-terminal domain of a multifunctional enzyme which catalyzes three different steps of histidine biosynthesis; and in plants it is expressed as nuclear encoded protein precursor which is exported to the chloroplast [].; GO: 0004399 histidinol dehydrogenase activity, 0008270 zinc ion binding, 0051287 NAD binding, 0000105 histidine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1KAE_B 1K75_A 1KAH_A 1KAR_B.
Probab=23.63 E-value=1.2e+02 Score=32.53 Aligned_cols=49 Identities=31% Similarity=0.402 Sum_probs=30.7
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeEecChhHH-HHhcccccc
Q 006381 143 VKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTA-AAIAYGLDK 191 (647)
Q Consensus 143 ~~~~ViTVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~A-aa~~y~~~~ 191 (647)
+.++|++-|+.-+..--..+..||.++|.+.+.-+--.-| ||++||...
T Consensus 137 V~~Iv~~TPp~~~G~i~p~vL~Aa~~~Gv~evy~vGGaqAIAAlAyGTet 186 (412)
T PF00815_consen 137 VKEIVVCTPPPKDGKINPAVLAAAHLAGVDEVYKVGGAQAIAALAYGTET 186 (412)
T ss_dssp -SEEEEEE-SS------HHHHHHHHHTT-SEEEE--HHHHHHHHHH--SS
T ss_pred CCeEEEEcCCCccCCCCHHHHHHHHHcCCCEEEecccHHHHHHHHcCCCC
Confidence 5689999998876666678899999999999998888777 577898543
No 228
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=23.62 E-value=1.7e+02 Score=29.69 Aligned_cols=44 Identities=11% Similarity=0.214 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHcCCCCCCCCeEEE-EcCCCCcHHHHHHHHhhhC
Q 006381 318 KCMEPVEKCLRDAKMDKSSVHDVVL-VGGSTRIPKVQQLLQDFFN 361 (647)
Q Consensus 318 ~~~~~i~~~l~~~~~~~~~i~~ViL-vGG~s~~p~v~~~l~~~f~ 361 (647)
-+...|+++|+++++++.+|+.++. +..++-.|.+-.+|.+.|+
T Consensus 86 v~f~av~~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~~ 130 (290)
T PF08392_consen 86 VIFGAVDDLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRYG 130 (290)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHhC
Confidence 3457788899999999999998665 6778899999999999993
No 229
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=23.55 E-value=6.9e+02 Score=26.46 Aligned_cols=51 Identities=18% Similarity=0.337 Sum_probs=26.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCCCCeEEEEcCCCCcHH-HHHHHHh
Q 006381 304 TRARFEELNMDLFRKCMEPVEKCLRDAKMD--KSSVHDVVLVGGSTRIPK-VQQLLQD 358 (647)
Q Consensus 304 tr~~fe~~~~~~~~~~~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~-v~~~l~~ 358 (647)
..+.++.+++.+++.... .=.+.++. ...+..|.++||.+.|-. +-..+.+
T Consensus 67 ~~~~~~~i~~~i~~~s~~----~q~~~~~~~~~~~~~~I~IiGG~GlmG~slA~~l~~ 120 (374)
T PRK11199 67 PPDLIEDVLRRVMRESYS----SENDKGFKTLNPDLRPVVIVGGKGQLGRLFAKMLTL 120 (374)
T ss_pred CHHHHHHHHHHHHHHHHH----HhHHhcccccCcccceEEEEcCCChhhHHHHHHHHH
Confidence 445555555555544432 11222222 124578999998777743 3344443
No 230
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=23.54 E-value=1.2e+02 Score=27.35 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=19.3
Q ss_pred CEEEEecCccceEEEEEE--CCeeEEE
Q 006381 8 PAIGIDLGTTYSCVGVWQ--HDRVEII 32 (647)
Q Consensus 8 ~vvGID~GTt~s~va~~~--~g~~~ii 32 (647)
.+++||.|+-|.+.++.+ ++.+.++
T Consensus 2 ii~sIDiGikNlA~~iie~~~~~i~~~ 28 (143)
T PF04848_consen 2 IILSIDIGIKNLAYCIIEFEGNKIRVI 28 (143)
T ss_pred eEEEEecCCCceeEEEEEcCCCeEEEE
Confidence 589999999999999886 3334444
No 231
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=23.32 E-value=49 Score=35.78 Aligned_cols=30 Identities=20% Similarity=0.400 Sum_probs=0.0
Q ss_pred EecCccceEEEEE--ECCeeEEEecCCCCcccceEE
Q 006381 12 IDLGTTYSCVGVW--QHDRVEIIANDQGNRTTPSYV 45 (647)
Q Consensus 12 ID~GTt~s~va~~--~~g~~~ii~~~~g~~~~Ps~v 45 (647)
+|||+|+|+++.+ +++.+..+ ++..+||.+
T Consensus 1 ~DiGST~Tk~~a~~~~~~~~~~~----~~~~tpTt~ 32 (463)
T TIGR01319 1 LDFGSTWTKAAAFDIEGDAILAT----AHDITPIES 32 (463)
T ss_pred CCccccceEEEEEecCCCcEEEE----EeccCccch
No 232
>PRK04406 hypothetical protein; Provisional
Probab=23.17 E-value=3.7e+02 Score=21.24 Aligned_cols=22 Identities=5% Similarity=0.087 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccc
Q 006381 599 EDKMKELESICNPIIAKMYQGA 620 (647)
Q Consensus 599 ~~k~~~l~~~~~~i~~r~~e~~ 620 (647)
+..++.|+..+.-+..|+.+..
T Consensus 38 q~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 38 QLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 4456667777777777877744
No 233
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=22.78 E-value=68 Score=34.78 Aligned_cols=20 Identities=35% Similarity=0.356 Sum_probs=17.8
Q ss_pred CCCEEEEecCccceEEEEEE
Q 006381 6 EGPAIGIDLGTTYSCVGVWQ 25 (647)
Q Consensus 6 ~~~vvGID~GTt~s~va~~~ 25 (647)
+.++++||-|||+|++.+++
T Consensus 4 ~~yIlAiDqGTTssRaivfd 23 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFD 23 (499)
T ss_pred ccEEEEEecCCcceeEEEEC
Confidence 57899999999999998884
No 234
>PF13941 MutL: MutL protein
Probab=22.57 E-value=2e+02 Score=31.44 Aligned_cols=47 Identities=21% Similarity=0.267 Sum_probs=32.1
Q ss_pred EEEEEeCCCceEEEEEEEeCCeEEEEEeeCCCCCChH-HHHHHHHHHH
Q 006381 201 VLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGE-DFDNRMVNHF 247 (647)
Q Consensus 201 vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~-~~d~~l~~~l 247 (647)
+|++|||+.+|-++++....+..++++......-=.. |+..-+.+-+
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTTv~~~Dv~~G~~~A~ 49 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTTVEPGDVTIGLNNAL 49 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCCcCcccHHHHHHHHH
Confidence 7999999999999999976777777766533322222 5555554433
No 235
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=22.37 E-value=1.1e+02 Score=28.67 Aligned_cols=18 Identities=39% Similarity=0.674 Sum_probs=15.4
Q ss_pred EEEecCccceEEEEEECC
Q 006381 10 IGIDLGTTYSCVGVWQHD 27 (647)
Q Consensus 10 vGID~GTt~s~va~~~~g 27 (647)
||||.|.|||=+.+.+++
T Consensus 2 igIDvGGT~TD~v~~d~~ 19 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDED 19 (176)
T ss_pred eeEecCCCcEEEEEEeCC
Confidence 799999999988777654
No 236
>COG1334 FlaG Uncharacterized flagellar protein FlaG [Cell motility and secretion]
Probab=22.14 E-value=2.2e+02 Score=24.74 Aligned_cols=42 Identities=24% Similarity=0.295 Sum_probs=30.4
Q ss_pred eEEEEEEcC-CceEEEEEeeccCCcceeEEEecCCCCCCHHHHHHHHHHHH
Q 006381 480 ITVCFDIDA-NGILNVSAEDKTTGQKNKITITNDKGRLSKDEIEKMVQEAE 529 (647)
Q Consensus 480 i~v~~~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~ls~~e~~~~~~~~~ 529 (647)
-.+.|++|. -|.+.|+..+.+||+.. ..+.++++-++-+++.
T Consensus 67 t~l~F~~dd~lg~~vVkI~d~~TgeVI--------RqIPpee~L~l~~r~~ 109 (120)
T COG1334 67 THLNFSYDDELGELVVKIIDKDTGEVI--------RQIPPEEALELAARMR 109 (120)
T ss_pred CceEEEEecccCcEEEEEEECCCCcch--------hhCChHHHHHHHHHHH
Confidence 567888876 48999999999998642 2466777666655444
No 237
>COG5418 Predicted secreted protein [Function unknown]
Probab=21.90 E-value=2.5e+02 Score=25.13 Aligned_cols=69 Identities=19% Similarity=0.450 Sum_probs=39.6
Q ss_pred HHHHHHHHcCCCCcE--EEEEcccc---CCceeEEeecHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEc
Q 006381 272 SCERAKRTLSSTAQT--TIEIDSLY---EGIDFYSPITRARFEEL-NMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVG 344 (647)
Q Consensus 272 ~~e~~K~~Ls~~~~~--~~~i~~~~---~~~d~~~~itr~~fe~~-~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvG 344 (647)
.+..+++.|+.++.. -+.+++.- -+.+ .-.+||++|+.. .+.+++.+.++|-+.|++-. ++.+ .++++|
T Consensus 30 ~~~ev~~~l~~npk~~~IiqlPCPE~~yLg~~-R~~~tke~~d~~~yRr~c~ki~~pi~~~l~e~k--~d~~-kii~IG 104 (164)
T COG5418 30 TAKEVRKALPSNPKDWNIIQLPCPEFEYLGWP-RPPMTKEVFDHPGYRRVCRKIADPIGRVLEEEK--PDGI-KIIFIG 104 (164)
T ss_pred HHHHHHHhhccCCCCCceEeccCchHHhhCCC-CCCcCHHHhcchhHHHHHHHHHHHHHHHHHHhC--cCCc-eEEEEe
Confidence 667788888877532 23343321 1111 135889998754 45667777777778777643 2222 455555
No 238
>PLN00078 photosystem I reaction center subunit N (PsaN); Provisional
Probab=21.29 E-value=4.9e+02 Score=21.76 Aligned_cols=9 Identities=44% Similarity=1.092 Sum_probs=6.4
Q ss_pred HHHHHHhcC
Q 006381 582 QAIQWLDSN 590 (647)
Q Consensus 582 ~~~~wl~~~ 590 (647)
.+.+||+.|
T Consensus 113 ~IleWL~KN 121 (122)
T PLN00078 113 GILEWLDKN 121 (122)
T ss_pred HHHHHHHcc
Confidence 456899865
No 239
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=21.07 E-value=3e+02 Score=28.02 Aligned_cols=51 Identities=31% Similarity=0.320 Sum_probs=31.1
Q ss_pred CeEEEEcCCCCc-HHHHHHHHhhhCC---ccccCCCCchhhHHhHHHHHHHHHcC
Q 006381 338 HDVVLVGGSTRI-PKVQQLLQDFFNG---KELCKSINPDEAVAYGAAVQAAILSG 388 (647)
Q Consensus 338 ~~ViLvGG~s~~-p~v~~~l~~~f~~---~~v~~~~~p~~ava~GAa~~a~~~~~ 388 (647)
=.|++|||.-.+ ..+++-....+.. .+-.....|.++-|.|||++|+.+.+
T Consensus 265 l~Iv~vG~V~~Sw~~l~~Gfl~sls~~~~f~~~~l~~~k~ssAvgAA~laa~~~~ 319 (336)
T KOG1794|consen 265 LPIVCVGGVFDSWDLLQEGFLDSLSDTRGFERVELYRPKESSAVGAAILAASLDN 319 (336)
T ss_pred ceEEEEcchhhHHHHHHHHHHHHhhcccCccceEEEeecccchHHHHHHhhhhcc
Confidence 369999997554 4444432222211 11123346788999999999997753
No 240
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=20.90 E-value=1.1e+02 Score=29.26 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=16.9
Q ss_pred EEEEecCccceEEEEEECCee
Q 006381 9 AIGIDLGTTYSCVGVWQHDRV 29 (647)
Q Consensus 9 vvGID~GTt~s~va~~~~g~~ 29 (647)
++-||.|+|++++++++++..
T Consensus 1 ~L~iDiGNT~ik~~~~~~~~~ 21 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGDKL 21 (206)
T ss_dssp EEEEEE-SSEEEEEEEETTEE
T ss_pred CEEEEECCCeEEEEEEECCEE
Confidence 478999999999999987743
No 241
>PF07066 DUF3882: Lactococcus phage M3 protein; InterPro: IPR009773 This family consists of several Lactococcus bacteriophage 712, middle-3 (M3) proteins of around 160 residues in length. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The function of this family is unknown.
Probab=20.78 E-value=1.2e+02 Score=27.21 Aligned_cols=22 Identities=9% Similarity=0.229 Sum_probs=18.6
Q ss_pred CCEEEEecCccc-----eEEEEEECCe
Q 006381 7 GPAIGIDLGTTY-----SCVGVWQHDR 28 (647)
Q Consensus 7 ~~vvGID~GTt~-----s~va~~~~g~ 28 (647)
+.++.|||-||+ +.-|+++++.
T Consensus 2 ~~~LslD~STs~~~~~gTG~A~~~~~~ 28 (159)
T PF07066_consen 2 KKVLSLDFSTSSKKGEGTGWAFFKGSD 28 (159)
T ss_pred CeeEEEEEecccCCCCCceeEEecCCe
Confidence 468999999998 9999887664
No 242
>PLN02854 3-ketoacyl-CoA synthase
Probab=20.60 E-value=2.7e+02 Score=31.06 Aligned_cols=45 Identities=2% Similarity=0.172 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCeEEE-EcCCCCcHHHHHHHHhhhC
Q 006381 317 RKCMEPVEKCLRDAKMDKSSVHDVVL-VGGSTRIPKVQQLLQDFFN 361 (647)
Q Consensus 317 ~~~~~~i~~~l~~~~~~~~~i~~ViL-vGG~s~~p~v~~~l~~~f~ 361 (647)
.-+...++++|+++++++.+|+.|+. +.+....|.+-.+|.+.++
T Consensus 190 ~v~~~~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~LG 235 (521)
T PLN02854 190 AVMFGALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHYK 235 (521)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhC
Confidence 34456778889999999999999987 4455568999999999994
No 243
>PRK13324 pantothenate kinase; Reviewed
Probab=20.43 E-value=1.1e+02 Score=30.73 Aligned_cols=20 Identities=30% Similarity=0.620 Sum_probs=17.5
Q ss_pred EEEEecCccceEEEEEECCe
Q 006381 9 AIGIDLGTTYSCVGVWQHDR 28 (647)
Q Consensus 9 vvGID~GTt~s~va~~~~g~ 28 (647)
++.||.|+|+++.++++++.
T Consensus 2 iL~iDiGNT~ik~gl~~~~~ 21 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDGDR 21 (258)
T ss_pred EEEEEeCCCceEEEEEECCE
Confidence 68999999999999998553
No 244
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=20.42 E-value=2.3e+02 Score=26.05 Aligned_cols=88 Identities=19% Similarity=0.278 Sum_probs=49.9
Q ss_pred eHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHH----------------HHHHHHHHHHcCCceeEecChhHH
Q 006381 119 AAEEISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQ----------------RQATKDAGVIAGLNVMRIINEPTA 182 (647)
Q Consensus 119 ~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~~~~~q----------------r~~l~~Aa~~AGl~~~~li~Ep~A 182 (647)
++++++..+.+.+.+.....- .. .+.|++|...+... .+.+.+ ..++ .+.+.++-.|
T Consensus 31 ~~~~~~~~l~~~i~~~~~~~~-~~--gIgi~~pG~v~~~~g~i~~~~~~~~~~~~l~~~l~~---~~~~-pv~i~Nd~~~ 103 (179)
T PF00480_consen 31 SPEELLDALAELIERLLADYG-RS--GIGISVPGIVDSEKGRIISSPNPGWENIPLKEELEE---RFGV-PVIIENDANA 103 (179)
T ss_dssp SHHHHHHHHHHHHHHHHHHHT-CE--EEEEEESSEEETTTTEEEECSSGTGTTCEHHHHHHH---HHTS-EEEEEEHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhcc-cc--cEEEeccccCcCCCCeEEecCCCCcccCCHHHHhhc---ccce-EEEEecCCCc
Confidence 456666666666666554432 11 55555555443221 233333 3355 4678999999
Q ss_pred HHhcccccccccCCCCeeEEEEEeCCCceEEEEE
Q 006381 183 AAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLL 216 (647)
Q Consensus 183 aa~~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~ 216 (647)
+|++....... ...++++.+-+|-| +-.+++
T Consensus 104 ~a~ae~~~~~~--~~~~~~~~l~ig~G-iG~~ii 134 (179)
T PF00480_consen 104 AALAEYWFGAA--KDCDNFLYLYIGTG-IGAGII 134 (179)
T ss_dssp HHHHHHHHSTT--TTTSSEEEEEESSS-EEEEEE
T ss_pred ceeehhhcCcc--CCcceEEEEEeecC-CCccee
Confidence 99876543322 23467888888876 444444
No 245
>cd02198 YjgH_like YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=20.36 E-value=1.7e+02 Score=24.71 Aligned_cols=48 Identities=17% Similarity=0.310 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCe--EEEEcCCCCcHHHHHHHHhhhC
Q 006381 314 DLFRKCMEPVEKCLRDAKMDKSSVHD--VVLVGGSTRIPKVQQLLQDFFN 361 (647)
Q Consensus 314 ~~~~~~~~~i~~~l~~~~~~~~~i~~--ViLvGG~s~~p~v~~~l~~~f~ 361 (647)
.-...+.+-|+.+|+.++.+..+|-. |+|+.-....+.+.+...++|+
T Consensus 33 ~Q~~~~~~ni~~~L~~aG~~~~dvvk~~vyl~~~~~~~~~~~~~~~~~f~ 82 (111)
T cd02198 33 AQFRLAFQNLGAVLEAAGCSFDDVVELTTFHVDMAAHLPAFAAVKDEYFK 82 (111)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEeccHHHHHHHHHHHHHHcC
Confidence 44566667788888888988777544 5667655788888888899995
No 246
>PRK12408 glucokinase; Provisional
Probab=20.30 E-value=73 Score=33.29 Aligned_cols=24 Identities=17% Similarity=0.106 Sum_probs=0.0
Q ss_pred CCCCCEEEEecCccceEEEEEECC
Q 006381 4 KGEGPAIGIDLGTTYSCVGVWQHD 27 (647)
Q Consensus 4 ~~~~~vvGID~GTt~s~va~~~~g 27 (647)
.++..++|||+|.|++++++++.+
T Consensus 13 ~~~~~~L~~DIGGT~i~~al~d~~ 36 (336)
T PRK12408 13 PRPESFVAADVGGTHVRVALVCAS 36 (336)
T ss_pred cccccEEEEEcChhhhheeEEecc
No 247
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=20.28 E-value=1.1e+02 Score=30.52 Aligned_cols=45 Identities=20% Similarity=0.334 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCc
Q 006381 305 RARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRI 349 (647)
Q Consensus 305 r~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~ 349 (647)
++..+.+...++...+..|+..+++.......-..++++||.+++
T Consensus 181 k~T~~aiqsG~v~g~~~~i~~~~~~~k~~~~~~~~~vltGg~~~~ 225 (251)
T COG1521 181 KNTVEAIQSGVVYGYVGLIEGLLKEIKEELKGGDAVVLTGGLAKL 225 (251)
T ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCchHh
Confidence 455666666777777777777777654332234689999998755
No 248
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=20.15 E-value=6e+02 Score=29.33 Aligned_cols=38 Identities=13% Similarity=0.099 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhhccchhhcCCCCHHHHHHHHHHHHHHHHHH
Q 006381 544 AKNALENYAYNMRNTVKDEKIGSKLAPADKKKIEDAIDQAIQWL 587 (647)
Q Consensus 544 a~n~lE~~i~~~r~~l~~~~~~~~~~~~~~~~i~~~l~~~~~wl 587 (647)
-+++|+..+.+.+++|++. ...+.+.+.+.++++.+-+
T Consensus 568 e~~~l~~~l~~~~~wL~~~------~~~~~~~~~~kl~eL~~~~ 605 (653)
T PTZ00009 568 DKATIEKAIDEALEWLEKN------QLAEKEEFEHKQKEVESVC 605 (653)
T ss_pred HHHHHHHHHHHHHHHHhcC------CchhHHHHHHHHHHHHHHH
Confidence 3455666666666666531 1233445555555554433
Done!