Query 006384
Match_columns 647
No_of_seqs 417 out of 2836
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 22:30:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006384.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006384hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1230 Protein containing rep 100.0 6.6E-79 1.4E-83 615.0 32.1 478 1-511 1-493 (521)
2 PLN02153 epithiospecifier prot 100.0 2.4E-42 5.2E-47 368.3 35.7 279 53-348 8-293 (341)
3 PLN02193 nitrile-specifier pro 100.0 1.3E-41 2.8E-46 376.5 36.6 258 62-348 159-419 (470)
4 KOG1230 Protein containing rep 100.0 1.2E-41 2.6E-46 344.8 23.9 270 120-500 62-348 (521)
5 KOG4693 Uncharacterized conser 100.0 4.6E-40 1E-44 316.4 22.1 263 66-350 11-287 (392)
6 PLN02193 nitrile-specifier pro 100.0 1.4E-37 3E-42 344.4 35.0 299 65-501 106-419 (470)
7 KOG4441 Proteins containing BT 100.0 1.8E-38 3.8E-43 356.2 27.9 284 65-501 272-555 (571)
8 PLN02153 epithiospecifier prot 100.0 1.3E-36 2.8E-41 324.2 31.8 281 108-501 4-293 (341)
9 TIGR03547 muta_rot_YjhT mutatr 100.0 1.8E-36 3.9E-41 323.9 29.6 257 63-348 2-307 (346)
10 PHA02713 hypothetical protein; 100.0 1E-36 2.3E-41 343.1 29.0 265 101-503 272-544 (557)
11 TIGR03548 mutarot_permut cycli 100.0 3.2E-36 6.8E-41 318.9 30.8 248 67-348 2-288 (323)
12 PRK14131 N-acetylneuraminic ac 100.0 1.4E-35 3.1E-40 320.0 30.1 307 55-497 15-373 (376)
13 PHA02713 hypothetical protein; 100.0 1.9E-35 4.2E-40 332.8 26.2 244 59-348 284-542 (557)
14 KOG4441 Proteins containing BT 100.0 2.4E-35 5.2E-40 330.9 25.3 243 59-348 313-555 (571)
15 KOG4693 Uncharacterized conser 100.0 5.3E-35 1.1E-39 281.6 18.7 264 123-502 12-286 (392)
16 KOG4152 Host cell transcriptio 100.0 2.3E-34 5E-39 297.4 21.1 330 53-504 18-379 (830)
17 PHA03098 kelch-like protein; P 100.0 2E-33 4.3E-38 317.6 27.3 271 82-502 251-521 (534)
18 KOG0379 Kelch repeat-containin 100.0 5.2E-33 1.1E-37 307.4 28.0 255 62-348 54-310 (482)
19 KOG0379 Kelch repeat-containin 100.0 4E-33 8.6E-38 308.3 25.6 258 118-503 54-312 (482)
20 PHA03098 kelch-like protein; P 100.0 1.3E-32 2.8E-37 311.0 28.7 238 69-350 285-522 (534)
21 PHA02790 Kelch-like protein; P 100.0 1.4E-30 3E-35 289.3 27.6 208 81-347 271-478 (480)
22 TIGR03548 mutarot_permut cycli 100.0 1.7E-30 3.7E-35 275.1 25.8 236 58-317 52-314 (323)
23 TIGR03547 muta_rot_YjhT mutatr 100.0 1.2E-29 2.6E-34 271.2 27.4 257 60-338 44-345 (346)
24 PHA02790 Kelch-like protein; P 100.0 1E-29 2.2E-34 282.4 25.8 210 130-498 267-476 (480)
25 PRK14131 N-acetylneuraminic ac 100.0 2.6E-29 5.6E-34 271.4 27.7 258 61-345 66-374 (376)
26 KOG4152 Host cell transcriptio 100.0 7.2E-30 1.6E-34 264.2 18.2 216 111-348 17-247 (830)
27 COG3055 Uncharacterized protei 99.8 9.1E-18 2E-22 169.9 20.1 258 61-348 29-335 (381)
28 KOG2437 Muskelin [Signal trans 99.8 3.6E-20 7.8E-25 192.5 2.1 264 64-348 256-543 (723)
29 COG3055 Uncharacterized protei 99.6 1.2E-14 2.7E-19 147.4 18.8 253 65-340 79-375 (381)
30 PF13422 DUF4110: Domain of un 99.6 4.4E-16 9.6E-21 131.4 2.6 46 587-632 1-48 (96)
31 KOG2437 Muskelin [Signal trans 99.5 6.5E-15 1.4E-19 153.7 3.6 207 110-339 238-471 (723)
32 PF13964 Kelch_6: Kelch motif 99.0 1.1E-09 2.5E-14 82.3 6.4 50 124-180 1-50 (50)
33 PF13964 Kelch_6: Kelch motif 98.9 1.4E-09 3.1E-14 81.8 5.6 50 179-236 1-50 (50)
34 PF13415 Kelch_3: Galactose ox 98.8 1.3E-08 2.9E-13 76.1 6.4 49 134-188 1-49 (49)
35 PF03089 RAG2: Recombination a 98.8 6.9E-07 1.5E-11 88.7 19.8 195 53-257 6-231 (337)
36 PF13415 Kelch_3: Galactose ox 98.7 2.6E-08 5.6E-13 74.6 6.6 49 81-133 1-49 (49)
37 PF13854 Kelch_5: Kelch motif 98.7 1.1E-08 2.4E-13 73.8 3.1 41 450-492 1-41 (42)
38 PLN02772 guanylate kinase 98.7 9.9E-08 2.1E-12 101.2 10.7 88 233-341 22-110 (398)
39 PF07646 Kelch_2: Kelch motif; 98.7 4.8E-08 1E-12 73.1 5.7 48 179-227 1-48 (49)
40 PF01344 Kelch_1: Kelch motif; 98.7 5.2E-08 1.1E-12 72.1 5.8 46 179-227 1-46 (47)
41 PF13418 Kelch_4: Galactose ox 98.6 5.4E-08 1.2E-12 72.8 4.9 46 179-227 1-47 (49)
42 PF13418 Kelch_4: Galactose ox 98.6 1.1E-07 2.3E-12 71.1 6.1 46 68-118 1-46 (49)
43 PLN02772 guanylate kinase 98.6 2.2E-07 4.7E-12 98.6 10.4 88 177-282 22-110 (398)
44 PF01344 Kelch_1: Kelch motif; 98.6 2E-07 4.3E-12 68.9 6.8 46 235-290 1-46 (47)
45 PF07646 Kelch_2: Kelch motif; 98.6 1.7E-07 3.7E-12 70.1 6.4 47 124-173 1-47 (49)
46 PF13854 Kelch_5: Kelch motif 98.4 4.6E-07 9.9E-12 65.4 5.9 42 121-166 1-42 (42)
47 PF03089 RAG2: Recombination a 98.4 8.2E-06 1.8E-10 81.2 15.9 114 136-257 40-176 (337)
48 TIGR01640 F_box_assoc_1 F-box 98.2 0.00033 7.1E-09 70.4 22.5 204 101-341 14-230 (230)
49 smart00612 Kelch Kelch domain. 98.2 2.6E-06 5.7E-11 62.4 4.7 47 136-190 1-47 (47)
50 smart00612 Kelch Kelch domain. 98.2 3.3E-06 7.2E-11 61.9 4.9 47 247-307 1-47 (47)
51 PF07250 Glyoxal_oxid_N: Glyox 98.0 0.00039 8.5E-09 69.9 17.2 151 102-290 47-208 (243)
52 PF07250 Glyoxal_oxid_N: Glyox 97.8 0.00072 1.6E-08 68.0 15.3 149 156-348 46-207 (243)
53 PRK11138 outer membrane biogen 97.2 0.064 1.4E-06 58.5 23.3 193 81-345 69-282 (394)
54 PRK11138 outer membrane biogen 97.2 0.12 2.7E-06 56.3 25.5 170 102-342 171-356 (394)
55 TIGR01640 F_box_assoc_1 F-box 97.0 0.066 1.4E-06 53.7 18.7 160 156-348 14-186 (230)
56 PF13360 PQQ_2: PQQ-like domai 96.9 0.58 1.3E-05 46.5 27.4 187 81-344 36-237 (238)
57 TIGR03300 assembly_YfgL outer 96.7 0.75 1.6E-05 49.6 25.9 169 102-341 156-340 (377)
58 PF08450 SGL: SMP-30/Gluconola 96.7 0.72 1.6E-05 46.5 24.1 200 81-347 11-221 (246)
59 TIGR03300 assembly_YfgL outer 96.4 0.91 2E-05 49.0 24.1 188 81-345 65-267 (377)
60 KOG2055 WD40 repeat protein [G 96.4 0.19 4.1E-06 53.8 17.1 195 62-314 207-406 (514)
61 PF13360 PQQ_2: PQQ-like domai 96.3 1.3 2.8E-05 44.0 24.0 176 102-346 4-200 (238)
62 PF12768 Rax2: Cortical protei 95.6 0.69 1.5E-05 47.9 17.0 127 139-289 2-130 (281)
63 KOG2055 WD40 repeat protein [G 95.2 0.3 6.5E-06 52.3 12.8 150 134-341 224-376 (514)
64 PF07893 DUF1668: Protein of u 95.1 0.59 1.3E-05 50.0 15.4 127 186-348 73-216 (342)
65 cd00094 HX Hemopexin-like repe 95.1 1.8 4E-05 42.1 17.6 148 81-283 16-178 (194)
66 cd00094 HX Hemopexin-like repe 95.0 2 4.2E-05 41.9 17.5 154 129-342 11-178 (194)
67 PF07893 DUF1668: Protein of u 94.9 0.76 1.6E-05 49.1 15.5 130 130-289 71-216 (342)
68 TIGR03866 PQQ_ABC_repeats PQQ- 94.9 4.5 9.8E-05 41.0 21.1 101 83-220 2-106 (300)
69 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.6 10 0.00022 43.1 26.6 117 81-225 69-199 (527)
70 PRK05137 tolB translocation pr 94.5 8.6 0.00019 42.4 23.2 194 101-347 226-420 (435)
71 PRK04792 tolB translocation pr 94.3 4.5 9.8E-05 44.9 20.4 147 156-347 242-390 (448)
72 PRK13684 Ycf48-like protein; P 93.8 11 0.00023 40.2 22.3 156 110-315 118-279 (334)
73 PRK04792 tolB translocation pr 93.8 5.3 0.00011 44.4 19.7 149 101-289 242-391 (448)
74 PF12768 Rax2: Cortical protei 93.7 1 2.2E-05 46.6 12.7 112 208-348 15-130 (281)
75 cd00216 PQQ_DH Dehydrogenases 93.5 16 0.00034 41.2 24.5 122 81-225 61-193 (488)
76 PRK04922 tolB translocation pr 93.4 10 0.00022 41.8 21.1 184 101-341 228-413 (433)
77 TIGR02800 propeller_TolB tol-p 93.3 12 0.00026 40.7 21.4 147 101-288 214-362 (417)
78 PF05096 Glu_cyclase_2: Glutam 93.1 2.1 4.6E-05 43.6 13.5 111 184-342 49-160 (264)
79 PRK00178 tolB translocation pr 93.0 11 0.00023 41.5 20.5 147 156-348 223-372 (430)
80 PRK05137 tolB translocation pr 92.9 11 0.00023 41.7 20.3 147 156-346 226-373 (435)
81 PRK00178 tolB translocation pr 92.8 18 0.00038 39.8 22.1 145 101-289 223-372 (430)
82 TIGR02800 propeller_TolB tol-p 92.7 9.2 0.0002 41.6 19.4 147 156-347 214-362 (417)
83 PRK04922 tolB translocation pr 92.6 10 0.00023 41.7 19.8 146 156-347 228-376 (433)
84 PF03178 CPSF_A: CPSF A subuni 92.5 5.4 0.00012 42.0 16.7 141 135-314 42-190 (321)
85 PRK03629 tolB translocation pr 92.2 19 0.00041 39.7 21.0 149 156-348 223-372 (429)
86 cd00200 WD40 WD40 domain, foun 92.1 13 0.00027 36.5 21.7 111 73-220 14-126 (289)
87 cd00200 WD40 WD40 domain, foun 91.9 13 0.00029 36.3 21.0 70 73-167 56-126 (289)
88 PRK02889 tolB translocation pr 91.6 19 0.00042 39.6 20.3 147 156-347 220-368 (427)
89 PRK11028 6-phosphogluconolacto 91.4 21 0.00046 37.5 20.8 113 72-218 38-157 (330)
90 PF03178 CPSF_A: CPSF A subuni 91.3 9.6 0.00021 40.1 16.8 141 82-252 42-190 (321)
91 PF05096 Glu_cyclase_2: Glutam 90.8 4.5 9.7E-05 41.3 12.9 107 133-283 54-160 (264)
92 PF02897 Peptidase_S9_N: Proly 90.8 27 0.00059 38.0 20.5 147 156-348 252-413 (414)
93 PRK13684 Ycf48-like protein; P 90.7 26 0.00056 37.3 21.2 187 66-314 43-233 (334)
94 PF10446 DUF2457: Protein of u 90.4 0.063 1.4E-06 57.3 -0.8 8 480-487 26-33 (458)
95 TIGR03866 PQQ_ABC_repeats PQQ- 90.3 22 0.00048 35.9 24.5 113 73-221 77-191 (300)
96 PRK04043 tolB translocation pr 89.3 38 0.00083 37.2 20.7 193 102-348 214-409 (419)
97 PF12217 End_beta_propel: Cata 89.1 28 0.0006 35.3 18.3 229 70-317 76-335 (367)
98 PRK03629 tolB translocation pr 88.9 41 0.00089 37.1 23.6 168 101-315 223-393 (429)
99 TIGR03075 PQQ_enz_alc_DH PQQ-d 88.1 41 0.00089 38.2 19.6 122 130-287 65-198 (527)
100 PLN00181 protein SPA1-RELATED; 88.1 46 0.001 39.8 21.1 91 156-282 555-650 (793)
101 KOG0310 Conserved WD40 repeat- 87.6 48 0.001 36.3 19.6 174 81-317 122-301 (487)
102 PF10282 Lactonase: Lactonase, 87.0 46 0.001 35.4 19.0 195 102-349 16-234 (345)
103 PF02191 OLF: Olfactomedin-lik 87.0 10 0.00022 38.7 12.4 172 134-348 30-212 (250)
104 KOG0649 WD40 repeat protein [G 86.1 40 0.00087 33.9 15.7 145 65-252 112-263 (325)
105 PF06524 NOA36: NOA36 protein; 85.9 0.55 1.2E-05 46.7 2.5 15 184-198 127-141 (314)
106 PF02191 OLF: Olfactomedin-lik 85.5 45 0.00097 34.0 17.0 155 122-313 66-237 (250)
107 PRK11028 6-phosphogluconolacto 85.3 52 0.0011 34.5 21.7 10 156-165 148-157 (330)
108 PLN02919 haloacid dehalogenase 85.1 1.1E+02 0.0024 38.1 26.7 159 134-342 694-891 (1057)
109 PF08450 SGL: SMP-30/Gluconola 84.8 45 0.00098 33.3 22.8 163 81-289 51-222 (246)
110 PRK04043 tolB translocation pr 84.3 29 0.00063 38.2 15.5 153 156-348 213-366 (419)
111 PF02897 Peptidase_S9_N: Proly 84.0 69 0.0015 34.8 20.9 147 100-288 251-412 (414)
112 COG4257 Vgb Streptogramin lyas 83.7 33 0.00072 35.1 13.8 138 105-288 172-313 (353)
113 PLN00181 protein SPA1-RELATED; 83.3 95 0.0021 37.2 20.6 60 134-219 587-650 (793)
114 PTZ00421 coronin; Provisional 83.2 86 0.0019 35.3 22.8 64 135-220 138-201 (493)
115 cd00216 PQQ_DH Dehydrogenases 83.0 75 0.0016 35.7 18.4 127 130-288 57-193 (488)
116 COG4257 Vgb Streptogramin lyas 82.6 62 0.0013 33.3 17.4 187 102-352 125-318 (353)
117 PF08268 FBA_3: F-box associat 82.3 31 0.00067 30.9 12.4 87 186-289 2-89 (129)
118 PLN00033 photosystem II stabil 81.3 88 0.0019 34.2 23.7 68 81-171 146-214 (398)
119 PRK02889 tolB translocation pr 81.1 92 0.002 34.2 22.3 182 101-340 220-404 (427)
120 PF08268 FBA_3: F-box associat 80.8 30 0.00066 31.0 11.8 86 132-227 3-90 (129)
121 PLN00033 photosystem II stabil 80.4 95 0.0021 34.0 27.3 121 70-224 89-214 (398)
122 KOG0772 Uncharacterized conser 80.4 71 0.0015 35.5 15.7 41 167-216 304-346 (641)
123 PF10282 Lactonase: Lactonase, 79.4 91 0.002 33.1 19.6 173 69-289 144-333 (345)
124 KOG0943 Predicted ubiquitin-pr 78.6 1 2.2E-05 53.5 1.5 9 612-620 1880-1888(3015)
125 KOG2321 WD40 repeat protein [G 78.2 49 0.0011 37.1 13.9 74 178-282 132-207 (703)
126 PRK10115 protease 2; Provision 78.2 1.5E+02 0.0032 35.0 27.4 149 156-346 199-353 (686)
127 smart00284 OLF Olfactomedin-li 77.9 86 0.0019 32.0 16.3 167 134-342 34-211 (255)
128 TIGR03074 PQQ_membr_DH membran 77.5 1.6E+02 0.0036 35.1 26.2 142 185-342 312-480 (764)
129 COG4946 Uncharacterized protei 76.8 1.3E+02 0.0027 33.3 17.3 174 155-352 106-308 (668)
130 PRK01742 tolB translocation pr 76.5 1.2E+02 0.0027 33.2 18.8 62 156-226 228-289 (429)
131 KOG1832 HIV-1 Vpr-binding prot 75.3 1.7 3.7E-05 50.4 2.0 8 309-316 1268-1275(1516)
132 KOG3130 Uncharacterized conser 74.9 3.9 8.4E-05 43.3 4.4 7 603-609 363-369 (514)
133 PF02239 Cytochrom_D1: Cytochr 74.2 1.3E+02 0.0029 32.4 19.1 186 101-347 16-210 (369)
134 PF02724 CDC45: CDC45-like pro 74.2 3.7 8.1E-05 47.5 4.6 10 580-589 200-209 (622)
135 PTZ00421 coronin; Provisional 74.1 1.6E+02 0.0034 33.2 20.4 52 102-167 149-201 (493)
136 PF09910 DUF2139: Uncharacteri 74.1 1.2E+02 0.0025 31.7 20.0 134 99-251 76-219 (339)
137 PLN03215 ascorbic acid mannose 72.6 1.5E+02 0.0032 32.1 17.5 154 165-349 189-356 (373)
138 KOG0646 WD40 repeat protein [G 72.5 80 0.0017 34.5 13.5 42 209-257 198-240 (476)
139 KOG2321 WD40 repeat protein [G 71.6 94 0.002 35.0 14.0 74 123-219 132-207 (703)
140 KOG0310 Conserved WD40 repeat- 70.8 91 0.002 34.2 13.5 128 81-257 165-302 (487)
141 COG1520 FOG: WD40-like repeat 69.3 1.7E+02 0.0036 31.4 22.0 199 81-347 68-278 (370)
142 PRK01742 tolB translocation pr 67.7 2E+02 0.0042 31.6 20.4 61 101-173 228-289 (429)
143 KOG0943 Predicted ubiquitin-pr 65.7 4 8.7E-05 48.8 2.4 23 65-88 1087-1109(3015)
144 COG4946 Uncharacterized protei 65.6 2.2E+02 0.0048 31.5 19.8 185 101-348 287-486 (668)
145 KOG0641 WD40 repeat protein [G 65.5 1.5E+02 0.0032 29.5 17.5 53 189-257 151-205 (350)
146 PF14870 PSII_BNR: Photosynthe 65.4 1.8E+02 0.004 30.5 20.9 191 81-348 71-270 (302)
147 KOG0289 mRNA splicing factor [ 64.9 2E+02 0.0043 31.5 14.3 59 157-227 412-472 (506)
148 KOG3064 RNA-binding nuclear pr 62.2 1.8 3.9E-05 43.1 -1.0 7 245-251 57-63 (303)
149 PF14870 PSII_BNR: Photosynthe 62.1 2.1E+02 0.0045 30.0 21.5 186 66-313 14-204 (302)
150 PF14583 Pectate_lyase22: Olig 61.3 2.4E+02 0.0053 30.5 15.5 209 81-341 46-274 (386)
151 PRK10115 protease 2; Provision 60.1 3.5E+02 0.0075 31.9 25.9 149 156-348 247-403 (686)
152 PLN03215 ascorbic acid mannose 59.9 2.6E+02 0.0055 30.3 17.0 101 110-227 189-304 (373)
153 KOG1832 HIV-1 Vpr-binding prot 59.9 5 0.00011 46.8 1.8 11 331-341 1206-1216(1516)
154 KOG0315 G-protein beta subunit 59.6 2.1E+02 0.0045 29.1 18.3 186 101-348 61-252 (311)
155 KOG0772 Uncharacterized conser 58.6 3E+02 0.0066 30.8 16.0 102 70-200 169-291 (641)
156 PF09910 DUF2139: Uncharacteri 58.5 2.4E+02 0.0051 29.5 14.7 104 154-284 76-185 (339)
157 KOG0266 WD40 repeat-containing 58.4 3E+02 0.0064 30.6 20.9 66 134-221 257-322 (456)
158 KOG4378 Nuclear protein COP1 [ 57.6 1.6E+02 0.0035 32.7 12.3 51 210-283 188-242 (673)
159 PF02239 Cytochrom_D1: Cytochr 55.3 3E+02 0.0065 29.7 16.3 178 72-301 39-223 (369)
160 KOG2773 Apoptosis antagonizing 54.9 13 0.00029 40.3 3.8 30 587-617 204-233 (483)
161 PF12217 End_beta_propel: Cata 53.9 2.6E+02 0.0056 28.6 13.9 168 127-315 77-258 (367)
162 TIGR03074 PQQ_membr_DH membran 53.1 2.3E+02 0.005 33.9 14.0 34 184-227 189-224 (764)
163 KOG0291 WD40-repeat-containing 51.8 4.6E+02 0.01 30.8 21.7 158 128-347 310-474 (893)
164 KOG0296 Angio-associated migra 50.8 3.4E+02 0.0074 29.0 17.2 146 134-341 75-222 (399)
165 KOG0291 WD40-repeat-containing 50.7 4.8E+02 0.01 30.7 18.5 110 134-287 361-473 (893)
166 KOG0526 Nucleosome-binding fac 50.7 12 0.00026 41.4 2.7 32 107-144 47-78 (615)
167 KOG4264 Nucleo-cytoplasmic pro 50.6 11 0.00023 41.5 2.3 8 609-616 198-205 (694)
168 PF03066 Nucleoplasmin: Nucleo 50.1 5.3 0.00012 37.2 0.0 9 464-472 97-105 (149)
169 COG5129 MAK16 Nuclear protein 49.5 9 0.00019 37.4 1.4 10 506-515 233-242 (303)
170 KOG0296 Angio-associated migra 49.1 3.6E+02 0.0079 28.8 18.1 61 70-145 66-128 (399)
171 KOG3241 Uncharacterized conser 48.8 13 0.00027 35.1 2.2 9 450-458 164-172 (227)
172 PF15525 DUF4652: Domain of un 48.1 1.9E+02 0.004 28.1 9.9 69 155-227 87-158 (200)
173 KOG0649 WD40 repeat protein [G 47.9 3.2E+02 0.0068 27.8 15.2 120 111-254 99-226 (325)
174 PF15525 DUF4652: Domain of un 47.8 2.4E+02 0.0052 27.4 10.5 67 99-173 86-157 (200)
175 PRK01029 tolB translocation pr 47.8 4.2E+02 0.0091 29.2 20.6 61 272-348 351-412 (428)
176 COG3823 Glutamine cyclotransfe 47.1 3E+02 0.0066 27.3 13.1 104 81-219 55-160 (262)
177 PLN02919 haloacid dehalogenase 47.1 6.7E+02 0.015 31.3 29.1 209 81-348 579-842 (1057)
178 KOG0308 Conserved WD40 repeat- 47.0 5.1E+02 0.011 29.9 14.7 77 71-167 119-204 (735)
179 COG4880 Secreted protein conta 46.9 4.3E+02 0.0093 29.0 14.2 57 98-166 403-459 (603)
180 TIGR02658 TTQ_MADH_Hv methylam 45.3 4.2E+02 0.0091 28.5 24.5 78 81-170 57-142 (352)
181 KOG1189 Global transcriptional 44.8 13 0.00028 42.8 1.9 7 465-471 803-809 (960)
182 KOG1517 Guanine nucleotide bin 44.5 6.9E+02 0.015 30.8 15.5 193 64-317 1160-1372(1387)
183 PTZ00415 transmission-blocking 44.4 13 0.00027 46.6 1.9 10 306-315 71-80 (2849)
184 KOG3881 Uncharacterized conser 43.7 2.9E+02 0.0064 29.7 11.4 96 154-281 224-321 (412)
185 PF03115 Astro_capsid: Astrovi 43.3 7.9 0.00017 45.6 0.0 11 330-340 535-545 (787)
186 KOG4364 Chromatin assembly fac 42.5 18 0.00038 41.1 2.5 7 506-512 526-532 (811)
187 PTZ00420 coronin; Provisional 42.5 5.9E+02 0.013 29.3 22.1 51 156-220 148-200 (568)
188 PF04147 Nop14: Nop14-like fam 41.2 17 0.00036 43.8 2.3 7 43-49 88-94 (840)
189 PF05285 SDA1: SDA1; InterPro 40.9 23 0.0005 37.5 3.1 14 602-615 234-247 (324)
190 KOG0316 Conserved WD40 repeat- 40.5 4E+02 0.0088 26.9 14.6 84 156-257 81-166 (307)
191 PTZ00415 transmission-blocking 40.4 17 0.00036 45.7 2.0 11 466-476 115-125 (2849)
192 PTZ00420 coronin; Provisional 39.9 6.4E+02 0.014 29.0 21.2 113 73-218 130-249 (568)
193 smart00284 OLF Olfactomedin-li 39.2 4.4E+02 0.0095 26.9 16.5 156 65-252 70-242 (255)
194 PF03344 Daxx: Daxx Family; I 39.1 10 0.00022 44.4 0.0 9 307-315 343-351 (713)
195 KOG0286 G-protein beta subunit 38.9 4.7E+02 0.01 27.3 19.7 38 274-314 253-292 (343)
196 KOG0316 Conserved WD40 repeat- 38.8 4.3E+02 0.0093 26.7 14.0 93 102-220 82-176 (307)
197 KOG0266 WD40 repeat-containing 37.7 6E+02 0.013 28.1 16.7 96 156-284 225-322 (456)
198 KOG1980 Uncharacterized conser 37.7 31 0.00067 39.2 3.4 22 588-610 452-473 (754)
199 PF13088 BNR_2: BNR repeat-lik 37.4 4.4E+02 0.0095 26.4 21.6 211 72-311 51-275 (275)
200 PF03066 Nucleoplasmin: Nucleo 37.0 11 0.00025 35.0 0.0 6 333-338 17-22 (149)
201 COG3823 Glutamine cyclotransfe 36.4 2.5E+02 0.0053 27.9 8.8 100 184-315 50-149 (262)
202 COG1520 FOG: WD40-like repeat 35.6 5.7E+02 0.012 27.2 19.2 99 102-224 122-226 (370)
203 PF03115 Astro_capsid: Astrovi 35.2 13 0.00027 43.9 0.0 6 636-641 778-783 (787)
204 PF11134 Phage_stabilise: Phag 33.9 6.9E+02 0.015 27.6 12.8 75 127-221 234-319 (469)
205 KOG0305 Anaphase promoting com 33.3 7.4E+02 0.016 27.8 16.1 79 102-199 198-279 (484)
206 KOG4649 PQQ (pyrrolo-quinoline 33.1 5.6E+02 0.012 26.4 11.5 104 185-341 16-125 (354)
207 KOG2048 WD40 repeat protein [G 33.0 8.3E+02 0.018 28.3 15.2 125 69-227 383-515 (691)
208 KOG3064 RNA-binding nuclear pr 32.7 17 0.00037 36.4 0.5 7 306-312 57-63 (303)
209 KOG3540 Beta amyloid precursor 32.5 28 0.0006 38.1 2.0 11 466-476 167-177 (615)
210 KOG0289 mRNA splicing factor [ 31.7 7.3E+02 0.016 27.3 13.2 100 157-290 370-472 (506)
211 KOG0279 G protein beta subunit 31.4 6.1E+02 0.013 26.3 13.3 98 134-257 203-305 (315)
212 KOG2038 CAATT-binding transcri 31.4 34 0.00074 39.7 2.5 10 278-287 756-765 (988)
213 KOG1834 Calsyntenin [Extracell 30.8 28 0.0006 39.5 1.7 6 84-89 344-349 (952)
214 KOG1834 Calsyntenin [Extracell 30.5 30 0.00065 39.3 1.9 6 137-142 344-349 (952)
215 COG2706 3-carboxymuconate cycl 30.3 7E+02 0.015 26.6 17.7 178 72-296 148-339 (346)
216 KOG0306 WD40-repeat-containing 29.4 1E+03 0.022 28.2 15.0 195 73-338 378-581 (888)
217 KOG2076 RNA polymerase III tra 29.3 31 0.00067 40.7 1.8 38 593-632 168-211 (895)
218 KOG0281 Beta-TrCP (transducin 27.7 1.8E+02 0.0038 30.9 6.7 82 156-257 340-421 (499)
219 KOG1446 Histone H3 (Lys4) meth 27.6 7.3E+02 0.016 26.0 17.4 29 300-341 236-264 (311)
220 KOG1036 Mitotic spindle checkp 27.6 7.3E+02 0.016 26.0 13.9 91 101-219 75-165 (323)
221 COG0823 TolB Periplasmic compo 27.5 8.6E+02 0.019 26.8 15.7 105 156-289 262-368 (425)
222 PF13570 PQQ_3: PQQ-like domai 26.0 1.2E+02 0.0027 20.7 3.9 26 300-340 15-40 (40)
223 COG5177 Uncharacterized conser 25.7 99 0.0021 34.3 4.7 14 598-611 471-484 (769)
224 KOG1036 Mitotic spindle checkp 25.7 7.9E+02 0.017 25.8 12.0 129 157-341 36-165 (323)
225 KOG0263 Transcription initiati 25.2 6.3E+02 0.014 29.6 11.1 12 305-316 629-640 (707)
226 PF13088 BNR_2: BNR repeat-lik 25.0 7E+02 0.015 24.9 14.6 151 81-250 118-275 (275)
227 KOG0235 Phosphoglycerate mutas 24.9 66 0.0014 31.9 3.0 26 598-623 128-153 (214)
228 KOG0640 mRNA cleavage stimulat 23.1 7.4E+02 0.016 26.1 10.0 100 73-199 221-326 (430)
229 COG0823 TolB Periplasmic compo 23.0 8.1E+02 0.018 27.0 11.4 108 208-349 261-369 (425)
230 PF04050 Upf2: Up-frameshift s 22.3 29 0.00063 33.0 0.0 6 581-586 68-73 (170)
231 KOG0318 WD40 repeat stress pro 21.8 1.1E+03 0.024 26.7 11.6 114 72-218 447-561 (603)
232 KOG0272 U4/U6 small nuclear ri 20.3 1.2E+03 0.025 25.7 12.7 144 70-256 305-452 (459)
No 1
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=6.6e-79 Score=615.04 Aligned_cols=478 Identities=46% Similarity=0.773 Sum_probs=382.6
Q ss_pred CCCCCCCCCCCchhhHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHhhhhhcceEEEEeccCCCCCCCCcceEEEEeccC
Q 006384 1 MGKKNKKAGKGKEKTERKTAKAEEKRARRETKKISPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNCSLNINPLK 80 (647)
Q Consensus 1 m~k~~~~~~~~~~k~~~k~~k~~~k~~~~~~~~~~~~edi~~~l~~~~~~e~~~~~~~~~~~~~~P~~R~~~s~~~~~~~ 80 (647)
||||+||++|+|. ++++++|+.+|.+++. +++.++.|+..|...|+..+++....+++..+++|+||.+++++++|.+
T Consensus 1 MgKK~Kk~kkgk~-aek~a~K~dkK~akr~-kkl~~e~de~~i~~~iq~~eaK~~e~~~e~~~~~PspRsn~sl~~nPek 78 (521)
T KOG1230|consen 1 MGKKNKKDKKGKG-AEKTAAKQDKKFAKRK-KKLNEELDEADIAEIIQSLEAKQIEHVVETSVPPPSPRSNPSLFANPEK 78 (521)
T ss_pred CCccccCcccccc-hhhhHHHHHHHHHhhh-hhcCcccchHHHHHHHHhhhhhccceeeeccCCCCCCCCCcceeeccCc
Confidence 9999888777763 3334444444444444 6677777777777788888887767777788999999999999999987
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEEC-CEEEEEeCCcCCCCCccccccCcEE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK-NYLYIFGGEFTSPNQERFHHYKDFW 159 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~-~~iyv~GG~~~~~~~~~~~~~~dv~ 159 (647)
+.|+||||++++|+++.+||+||+||+.+++|+++.+++.|+||++|++|++. |.+|||||.+.++++.+|+||+|+|
T Consensus 79 -eELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W 157 (521)
T KOG1230|consen 79 -EELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLW 157 (521)
T ss_pred -ceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhhee
Confidence 69999999999999999999999999999999999999999999999999995 8999999999999999999999999
Q ss_pred EEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceee
Q 006384 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGF 239 (647)
Q Consensus 160 ~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~ 239 (647)
+||+.+++|+++...+.|+||++|+|++++++|+|||||++..++..|+||||+||+.+.+|+++.+. +..|.||+||
T Consensus 158 ~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Kleps--ga~PtpRSGc 235 (521)
T KOG1230|consen 158 LFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPS--GAGPTPRSGC 235 (521)
T ss_pred eeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCC--CCCCCCCCcc
Confidence 99999999999999989999999999999999999999999999999999999999999999999984 4489999999
Q ss_pred eEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCC-----CeEEEeecCCCCCCCceeeEEEEE-CCeEEEe
Q 006384 240 QFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT-----WEWSKVKKIGMPPGPRAGFSMCVH-KKRALLF 312 (647)
Q Consensus 240 s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t-----~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyif 312 (647)
++++. .+.|||+|||+.. ..+.....+..++|+|.++|.. ..|+++.+.|..|.||+++++++. +++.|+|
T Consensus 236 q~~vtpqg~i~vyGGYsK~--~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~F 313 (521)
T KOG1230|consen 236 QFSVTPQGGIVVYGGYSKQ--RVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFF 313 (521)
T ss_pred eEEecCCCcEEEEcchhHh--hhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEe
Confidence 99999 9999999999987 5777888999999999999988 899999999999999999999998 5699999
Q ss_pred cceeccccCccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchh
Q 006384 313 GGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENA 392 (647)
Q Consensus 313 GG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 392 (647)
||+.+.+..++.+.+.|+||||.||+..++|+...+.+.++....+++.. .+....+.+...+ .+.-|-
T Consensus 314 GGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~qlq~~~S~~~~~r~~~------Kd~~k~~~~~~~G---~~tkd~-- 382 (521)
T KOG1230|consen 314 GGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQLQGKKSPATSRRRSR------KDQEKELQRPTVG---PNTKDL-- 382 (521)
T ss_pred cceecccccchhhhhhhhhhhhheecccchhhHhhhccCCCCcccccccc------ccccccccCcccC---CCcccc--
Confidence 99999999999999999999999999999999998766554432211111 1111111000000 000000
Q ss_pred hhhhhhhhcccccccccccCCccee-ecCceee---eecCCCCCcc-cccccccccCCCCCcCCccccccceeeecCeEE
Q 006384 393 EYYEEADEMESNIDNLSECVPNSVI-VDDGVLA---AKSGGKPYES-KKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLY 467 (647)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Ly 467 (647)
+ .......+. +-.+++. +..++....+ ++......++....--|.||+++.++|..+.||
T Consensus 383 ---------e------~~~v~k~v~~~~d~l~i~v~v~~~g~~~~p~s~~e~s~~~~~e~~~~~~pr~d~~~~v~~G~~~ 447 (521)
T KOG1230|consen 383 ---------E------VQAVDKAVCPTTDSLFIYVGVWEPGEADYPESEDEASREGDREPDEGEFPRMDDELSVKVGVLY 447 (521)
T ss_pred ---------c------ceecceeeeecCCceEEEeecCCCCCCCCcccccccccccCCCCCCCCCccCCCccCcccceEE
Confidence 0 000001111 1122221 1111111111 111122222222222599999999999999999
Q ss_pred EecceEeecCeEEeecceeccccCCccceEEeccCCc--hhhcccc
Q 006384 468 VYGGMMEINDQEITLDDLYSLNLSKLDEWKCIIPASE--SEWVEAS 511 (647)
Q Consensus 468 i~GG~~e~g~~e~tl~D~~~ldl~~~d~w~~~~~~~~--~~w~~~~ 511 (647)
|+||+++.+|++.||.|||+|+|+++..|+.|.+.+. .||++..
T Consensus 448 i~gGi~ee~d~q~tl~dfyal~~hr~~~~K~L~~~sfe~~E~re~~ 493 (521)
T KOG1230|consen 448 IGGGIFEERDWQPTLRDFYALDLHRNEKGKQLKTKSFELCEWRERR 493 (521)
T ss_pred ecCCCcccccccchHHHHhhhhhhhhhhhhhhccCCchhhhhhhhh
Confidence 9999999999999999999999999889999999876 4898653
No 2
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=2.4e-42 Score=368.34 Aligned_cols=279 Identities=23% Similarity=0.408 Sum_probs=216.3
Q ss_pred ceEEEEeccCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCC-CCCC-cceeEE
Q 006384 53 KKKEVHVEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN-SPPP-RSAHQA 130 (647)
Q Consensus 53 ~~~~~~~~~~~~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~-~P~~-R~~ha~ 130 (647)
.|..+.. ....+|.||.+|+++++ ++.||||||.... .....+++|+||+.+++|..++++. .|.+ +.+|++
T Consensus 8 ~W~~~~~-~~~~~P~pR~~h~~~~~---~~~iyv~GG~~~~--~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~ 81 (341)
T PLN02153 8 GWIKVEQ-KGGKGPGPRCSHGIAVV---GDKLYSFGGELKP--NEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRM 81 (341)
T ss_pred eEEEecC-CCCCCCCCCCcceEEEE---CCEEEEECCccCC--CCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEE
Confidence 4554443 22347899999999999 8999999996322 2235689999999999999987653 2332 447899
Q ss_pred EEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccC---CCCCCcceeEEEEECCEEEEEecccCCCC--ce
Q 006384 131 VSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK---GCPSPRSGHRMVLYKHKIIVFGGFYDTLR--EV 205 (647)
Q Consensus 131 v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~---~~P~~R~~h~~~~~~~~lyv~GG~~~~~~--~~ 205 (647)
++++++||||||..... .++++++||+.+++|+.++.. ..|.+|.+|++++++++||||||+..... ..
T Consensus 82 ~~~~~~iyv~GG~~~~~------~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~ 155 (341)
T PLN02153 82 VAVGTKLYIFGGRDEKR------EFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTP 155 (341)
T ss_pred EEECCEEEEECCCCCCC------ccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCC
Confidence 99999999999975432 468999999999999998762 12889999999999999999999864321 12
Q ss_pred eeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEE
Q 006384 206 RYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS 285 (647)
Q Consensus 206 ~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~ 285 (647)
..++++++||+.+++|+.++.+ ...|.+|.+|++++++++|||+||.... ...+. ......+++++||+.+++|+
T Consensus 156 ~~~~~v~~yd~~~~~W~~l~~~--~~~~~~r~~~~~~~~~~~iyv~GG~~~~--~~~gG-~~~~~~~~v~~yd~~~~~W~ 230 (341)
T PLN02153 156 ERFRTIEAYNIADGKWVQLPDP--GENFEKRGGAGFAVVQGKIWVVYGFATS--ILPGG-KSDYESNAVQFFDPASGKWT 230 (341)
T ss_pred cccceEEEEECCCCeEeeCCCC--CCCCCCCCcceEEEECCeEEEEeccccc--cccCC-ccceecCceEEEEcCCCcEE
Confidence 2468999999999999999876 2346899999999999999999997532 10000 01123678999999999999
Q ss_pred EeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 286 KVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 286 ~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
++...+..|.+|..|++++++++||||||.......+........|+||+||+.+++|+.+..
T Consensus 231 ~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 231 EVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGE 293 (341)
T ss_pred eccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccC
Confidence 998877789999999999999999999997532211111224567899999999999998865
No 3
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.3e-41 Score=376.54 Aligned_cols=258 Identities=25% Similarity=0.449 Sum_probs=213.5
Q ss_pred CCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCC-CCCC-CcceeEEEEECCEEEE
Q 006384 62 NVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSP-NSPP-PRSAHQAVSWKNYLYI 139 (647)
Q Consensus 62 ~~~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~-~~P~-~R~~ha~v~~~~~iyv 139 (647)
...+|.||.+|+++++ ++.||||||.... .....+++|+||+.+++|..++.+ ..|. +|.+|++++++++|||
T Consensus 159 ~~~~P~pR~~h~~~~~---~~~iyv~GG~~~~--~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYv 233 (470)
T PLN02193 159 KGEGPGLRCSHGIAQV---GNKIYSFGGEFTP--NQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYV 233 (470)
T ss_pred CCCCCCCccccEEEEE---CCEEEEECCcCCC--CCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEE
Confidence 3457899999999999 8999999996322 223567999999999999987754 2344 3678999999999999
Q ss_pred EeCCcCCCCCccccccCcEEEEECCCCcEEEcccCC-CCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCC
Q 006384 140 FGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-CPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (647)
Q Consensus 140 ~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~-~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (647)
|||.... ..++++|+||+.+++|+.+.+.+ .|.+|++|++++++++||||||+... ..++++++||+.+
T Consensus 234 fGG~~~~------~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~----~~~~~~~~yd~~t 303 (470)
T PLN02193 234 FGGRDAS------RQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSAT----ARLKTLDSYNIVD 303 (470)
T ss_pred ECCCCCC------CCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCC----CCcceEEEEECCC
Confidence 9997643 24799999999999999998732 28899999999999999999998653 2478999999999
Q ss_pred CceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCce
Q 006384 219 FKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRA 298 (647)
Q Consensus 219 ~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~ 298 (647)
++|+.+++. ...|.+|.+|++++++++|||+||.... .++++++||+.+++|+++..++..|.+|.
T Consensus 304 ~~W~~~~~~--~~~~~~R~~~~~~~~~gkiyviGG~~g~------------~~~dv~~yD~~t~~W~~~~~~g~~P~~R~ 369 (470)
T PLN02193 304 KKWFHCSTP--GDSFSIRGGAGLEVVQGKVWVVYGFNGC------------EVDDVHYYDPVQDKWTQVETFGVRPSERS 369 (470)
T ss_pred CEEEeCCCC--CCCCCCCCCcEEEEECCcEEEEECCCCC------------ccCceEEEECCCCEEEEeccCCCCCCCcc
Confidence 999998764 3357899999999999999999997533 36889999999999999998888899999
Q ss_pred eeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 299 GFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 299 ~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
.|++++++++||||||..............++|++|+||+.+++|+.+..
T Consensus 370 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~ 419 (470)
T PLN02193 370 VFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDK 419 (470)
T ss_pred eeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEccc
Confidence 99999999999999998653222222224567899999999999998875
No 4
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=1.2e-41 Score=344.83 Aligned_cols=270 Identities=28% Similarity=0.590 Sum_probs=229.2
Q ss_pred CCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEEC-CEEEEEe
Q 006384 120 NSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYK-HKIIVFG 196 (647)
Q Consensus 120 ~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~-~~lyv~G 196 (647)
..|.||++.++++. .+.|+||||.+..... .++||++|.||+.+++|..+..+..|.||++|.+|++. |.|||||
T Consensus 62 ~~PspRsn~sl~~nPekeELilfGGEf~ngqk--T~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fG 139 (521)
T KOG1230|consen 62 PPPSPRSNPSLFANPEKEELILFGGEFYNGQK--THVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFG 139 (521)
T ss_pred CCCCCCCCcceeeccCcceeEEecceeeccee--EEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEec
Confidence 35789999998887 4789999998776443 67899999999999999999887789999999999985 8999999
Q ss_pred cccCCCCce--eeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeE
Q 006384 197 GFYDTLREV--RYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDL 274 (647)
Q Consensus 197 G~~~~~~~~--~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv 274 (647)
|-....... ..+.|+|.||+.+++|.++.... .|.||+||-|++...+|+||||+... .+...++||+
T Consensus 140 GEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g---~PS~RSGHRMvawK~~lilFGGFhd~-------nr~y~YyNDv 209 (521)
T KOG1230|consen 140 GEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG---GPSPRSGHRMVAWKRQLILFGGFHDS-------NRDYIYYNDV 209 (521)
T ss_pred cccCCcchhhhhhhhheeeeeeccchheeeccCC---CCCCCccceeEEeeeeEEEEcceecC-------CCceEEeeee
Confidence 976543322 25789999999999999998764 49999999999999999999998654 4456789999
Q ss_pred EEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEecceeccccCccccccccCCcEEEEECCC-----CcEEEeEe
Q 006384 275 WSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN-----HRWYPLEL 348 (647)
Q Consensus 275 ~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t-----~~W~~l~~ 348 (647)
|+||+.+.+|+++.+.|..|.||+||++++. ++.|||+||++......+...++..+|+|.+++.. ..|.++.+
T Consensus 210 y~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp 289 (521)
T KOG1230|consen 210 YAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKP 289 (521)
T ss_pred EEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccC
Confidence 9999999999999999889999999999998 99999999998877777777889999999999998 56777766
Q ss_pred cCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhhcccccccccccCCcceeecCceeeeecC
Q 006384 349 RKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSG 428 (647)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (647)
.+
T Consensus 290 ~g------------------------------------------------------------------------------ 291 (521)
T KOG1230|consen 290 SG------------------------------------------------------------------------------ 291 (521)
T ss_pred CC------------------------------------------------------------------------------
Confidence 21
Q ss_pred CCCCcccccccccccCCCCCcCCccccccceeeecC-eEEEecceEeec-CeE----EeecceeccccCCccceEEec
Q 006384 429 GKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKD-TLYVYGGMMEIN-DQE----ITLDDLYSLNLSKLDEWKCII 500 (647)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~-~Lyi~GG~~e~g-~~e----~tl~D~~~ldl~~~d~w~~~~ 500 (647)
+.|.||.+++.+|..| +-|.|||++... +.| .-+||||.|||.. ++|....
T Consensus 292 --------------------~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~-nrW~~~q 348 (521)
T KOG1230|consen 292 --------------------VKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTR-NRWSEGQ 348 (521)
T ss_pred --------------------CCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheeccc-chhhHhh
Confidence 1599999999988766 899999987521 111 3389999999988 9997653
No 5
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=4.6e-40 Score=316.42 Aligned_cols=263 Identities=23% Similarity=0.447 Sum_probs=224.0
Q ss_pred CCCCcceEEEEeccCCCEEEEEcCeecCCCcc--eeeCcEEEEECCCCeEEEecCC-----------CCCCCcceeEEEE
Q 006384 66 PSPRSNCSLNINPLKETELILYGGEFYNGNKT--YVYGDLYRYDVEKQEWKVISSP-----------NSPPPRSAHQAVS 132 (647)
Q Consensus 66 P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~--~~~ndl~~yd~~~~~W~~l~s~-----------~~P~~R~~ha~v~ 132 (647)
-+.|.+|+++.+ +.+||-|||.. .|... .--=|+.++|..+-+|.++++. ..|-.|++|+++.
T Consensus 11 GPrRVNHAavaV---G~riYSFGGYC-sGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~ 86 (392)
T KOG4693|consen 11 GPRRVNHAAVAV---GSRIYSFGGYC-SGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVE 86 (392)
T ss_pred Ccccccceeeee---cceEEecCCcc-cccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEE
Confidence 346899999999 89999999963 22211 1123789999999999988762 2466799999999
Q ss_pred ECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCC-CCCcceeEEEEECCEEEEEecccCCCCceeeeCcE
Q 006384 133 WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDL 211 (647)
Q Consensus 133 ~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~-P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv 211 (647)
+.+++||.||.+.... ..|-++.||++++.|.+....+. |.+|-+|++|++++.+|||||+.... .++.+++
T Consensus 87 y~d~~yvWGGRND~eg-----aCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a--~~FS~d~ 159 (392)
T KOG4693|consen 87 YQDKAYVWGGRNDDEG-----ACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDA--QRFSQDT 159 (392)
T ss_pred EcceEEEEcCccCccc-----ccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHH--Hhhhccc
Confidence 9999999999987644 46899999999999999887765 99999999999999999999997643 3578999
Q ss_pred EEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCC
Q 006384 212 YVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG 291 (647)
Q Consensus 212 ~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g 291 (647)
+.||+.|.+|+.+... +.+|.-|-.|+++++++.+|||||.... ..........+.+.+..||+.+..|.+....+
T Consensus 160 h~ld~~TmtWr~~~Tk--g~PprwRDFH~a~~~~~~MYiFGGR~D~--~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~ 235 (392)
T KOG4693|consen 160 HVLDFATMTWREMHTK--GDPPRWRDFHTASVIDGMMYIFGGRSDE--SGPFHSIHEQYCDTIMALDLATGAWTRTPENT 235 (392)
T ss_pred eeEeccceeeeehhcc--CCCchhhhhhhhhhccceEEEecccccc--CCCccchhhhhcceeEEEeccccccccCCCCC
Confidence 9999999999999887 6678899999999999999999999876 33444455667788999999999999998888
Q ss_pred CCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEecC
Q 006384 292 MPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRK 350 (647)
Q Consensus 292 ~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~ 350 (647)
..|..|..|++.+++++||||||++.. ....+|+||.|||.+..|..+..++
T Consensus 236 ~~P~GRRSHS~fvYng~~Y~FGGYng~-------ln~HfndLy~FdP~t~~W~~I~~~G 287 (392)
T KOG4693|consen 236 MKPGGRRSHSTFVYNGKMYMFGGYNGT-------LNVHFNDLYCFDPKTSMWSVISVRG 287 (392)
T ss_pred cCCCcccccceEEEcceEEEecccchh-------hhhhhcceeecccccchheeeeccC
Confidence 889999999999999999999999863 3567899999999999999999843
No 6
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.4e-37 Score=344.38 Aligned_cols=299 Identities=22% Similarity=0.376 Sum_probs=238.3
Q ss_pred CCCCC-cceEEEEeccCCCEEEEEcCeecCCCcceeeCcE--EEEECCC----CeEEEecCC-CCCCCcceeEEEEECCE
Q 006384 65 APSPR-SNCSLNINPLKETELILYGGEFYNGNKTYVYGDL--YRYDVEK----QEWKVISSP-NSPPPRSAHQAVSWKNY 136 (647)
Q Consensus 65 ~P~~R-~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl--~~yd~~~----~~W~~l~s~-~~P~~R~~ha~v~~~~~ 136 (647)
+|... .+..+++. +++|+.|+|+. +. .++.+ |.+++.+ ++|..++++ ..|.||.+|+++++++.
T Consensus 106 ~~~g~~~g~~f~~~---~~~ivgf~G~~--~~---~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~ 177 (470)
T PLN02193 106 HPIEKRPGVKFVLQ---GGKIVGFHGRS--TD---VLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNK 177 (470)
T ss_pred cccccCCCCEEEEc---CCeEEEEeccC--CC---cEEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCE
Confidence 44443 44445543 89999999962 22 34444 4446544 899998764 35889999999999999
Q ss_pred EEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCC-CCC-CcceeEEEEECCEEEEEecccCCCCceeeeCcEEEE
Q 006384 137 LYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-CPS-PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVF 214 (647)
Q Consensus 137 iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~-~P~-~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~y 214 (647)
||||||...... ...+++|+||+.+++|+.++..+ .|. .|.+|++++++++||||||+... ..++++|+|
T Consensus 178 iyv~GG~~~~~~----~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~----~~~ndv~~y 249 (470)
T PLN02193 178 IYSFGGEFTPNQ----PIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDAS----RQYNGFYSF 249 (470)
T ss_pred EEEECCcCCCCC----CeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCC----CCCccEEEE
Confidence 999999754322 14578999999999999887643 344 36789999999999999998643 257999999
Q ss_pred EcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCC
Q 006384 215 DLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPP 294 (647)
Q Consensus 215 D~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P 294 (647)
|+.+++|+.++++. ..|.+|++|++++++++||||||+... ..++++++||+.+++|+.++..+.+|
T Consensus 250 D~~t~~W~~l~~~~--~~P~~R~~h~~~~~~~~iYv~GG~~~~-----------~~~~~~~~yd~~t~~W~~~~~~~~~~ 316 (470)
T PLN02193 250 DTTTNEWKLLTPVE--EGPTPRSFHSMAADEENVYVFGGVSAT-----------ARLKTLDSYNIVDKKWFHCSTPGDSF 316 (470)
T ss_pred ECCCCEEEEcCcCC--CCCCCccceEEEEECCEEEEECCCCCC-----------CCcceEEEEECCCCEEEeCCCCCCCC
Confidence 99999999998763 348899999999999999999998654 35678999999999999998766678
Q ss_pred CCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhc
Q 006384 295 GPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEK 374 (647)
Q Consensus 295 ~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (647)
.+|.+|++++++++|||+||... ..+++|++||+.+++|+.+...+.
T Consensus 317 ~~R~~~~~~~~~gkiyviGG~~g----------~~~~dv~~yD~~t~~W~~~~~~g~----------------------- 363 (470)
T PLN02193 317 SIRGGAGLEVVQGKVWVVYGFNG----------CEVDDVHYYDPVQDKWTQVETFGV----------------------- 363 (470)
T ss_pred CCCCCcEEEEECCcEEEEECCCC----------CccCceEEEECCCCEEEEeccCCC-----------------------
Confidence 89999999999999999999753 236899999999999999876210
Q ss_pred cCchhhhhcccCcccchhhhhhhhhhcccccccccccCCcceeecCceeeeecCCCCCcccccccccccCCCCCcCCccc
Q 006384 375 LNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGR 454 (647)
Q Consensus 375 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R 454 (647)
.|.+|
T Consensus 364 ---------------------------------------------------------------------------~P~~R 368 (470)
T PLN02193 364 ---------------------------------------------------------------------------RPSER 368 (470)
T ss_pred ---------------------------------------------------------------------------CCCCc
Confidence 48999
Q ss_pred cccceeeecCeEEEecceEeecC-----eEEeecceeccccCCccceEEecc
Q 006384 455 INSCMVVGKDTLYVYGGMMEIND-----QEITLDDLYSLNLSKLDEWKCIIP 501 (647)
Q Consensus 455 ~~~~~~v~~~~Lyi~GG~~e~g~-----~e~tl~D~~~ldl~~~d~w~~~~~ 501 (647)
..|+++++++.||||||...... ....++|+|.||+.+ ++|+.+..
T Consensus 369 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t-~~W~~~~~ 419 (470)
T PLN02193 369 SVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTET-LQWERLDK 419 (470)
T ss_pred ceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCc-CEEEEccc
Confidence 99999999999999999753110 113478999999999 99998864
No 7
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.8e-38 Score=356.19 Aligned_cols=284 Identities=21% Similarity=0.366 Sum_probs=248.8
Q ss_pred CCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCc
Q 006384 65 APSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEF 144 (647)
Q Consensus 65 ~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~ 144 (647)
.+.+|..... .. .+.||++||... .....+.+.+||+.+++|..++.+ |.+|..++++++++.||++||++
T Consensus 272 ~~~~~t~~r~-~~---~~~l~~vGG~~~---~~~~~~~ve~yd~~~~~w~~~a~m--~~~r~~~~~~~~~~~lYv~GG~~ 342 (571)
T KOG4441|consen 272 MQSPRTRPRR-SV---SGKLVAVGGYNR---QGQSLRSVECYDPKTNEWSSLAPM--PSPRCRVGVAVLNGKLYVVGGYD 342 (571)
T ss_pred ccCCCcccCc-CC---CCeEEEECCCCC---CCcccceeEEecCCcCcEeecCCC--CcccccccEEEECCEEEEEcccc
Confidence 5666655443 22 589999999632 234678999999999999999885 58999999999999999999998
Q ss_pred CCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEe
Q 006384 145 TSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (647)
Q Consensus 145 ~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (647)
.. ...++.+|+||+.+++|..+++ |+.+|.+|+++++++.||++||+++ ..+++++++||+.+++|+.+
T Consensus 343 ~~-----~~~l~~ve~YD~~~~~W~~~a~--M~~~R~~~~v~~l~g~iYavGG~dg----~~~l~svE~YDp~~~~W~~v 411 (571)
T KOG4441|consen 343 SG-----SDRLSSVERYDPRTNQWTPVAP--MNTKRSDFGVAVLDGKLYAVGGFDG----EKSLNSVECYDPVTNKWTPV 411 (571)
T ss_pred CC-----CcccceEEEecCCCCceeccCC--ccCccccceeEEECCEEEEEecccc----ccccccEEEecCCCCccccc
Confidence 51 2367999999999999999988 9999999999999999999999985 34799999999999999999
Q ss_pred ccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEE
Q 006384 225 KPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV 304 (647)
Q Consensus 225 ~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~ 304 (647)
+++ +.+|++|++++++++||++||.+.. ...++.+.+|||.+++|+.+++| +.+|.++++++
T Consensus 412 a~m-----~~~r~~~gv~~~~g~iYi~GG~~~~----------~~~l~sve~YDP~t~~W~~~~~M---~~~R~~~g~a~ 473 (571)
T KOG4441|consen 412 APM-----LTRRSGHGVAVLGGKLYIIGGGDGS----------SNCLNSVECYDPETNTWTLIAPM---NTRRSGFGVAV 473 (571)
T ss_pred CCC-----CcceeeeEEEEECCEEEEEcCcCCC----------ccccceEEEEcCCCCceeecCCc---ccccccceEEE
Confidence 999 7799999999999999999999876 23889999999999999999887 89999999999
Q ss_pred ECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcc
Q 006384 305 HKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFD 384 (647)
Q Consensus 305 ~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (647)
++++||++||.++ ......|++||+.+++|+.+..
T Consensus 474 ~~~~iYvvGG~~~---------~~~~~~VE~ydp~~~~W~~v~~------------------------------------ 508 (571)
T KOG4441|consen 474 LNGKIYVVGGFDG---------TSALSSVERYDPETNQWTMVAP------------------------------------ 508 (571)
T ss_pred ECCEEEEECCccC---------CCccceEEEEcCCCCceeEccc------------------------------------
Confidence 9999999999876 2345669999999999999976
Q ss_pred cCcccchhhhhhhhhhcccccccccccCCcceeecCceeeeecCCCCCcccccccccccCCCCCcCCccccccceeeecC
Q 006384 385 ANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKD 464 (647)
Q Consensus 385 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~ 464 (647)
|+.+|.++++++.++
T Consensus 509 -----------------------------------------------------------------m~~~rs~~g~~~~~~ 523 (571)
T KOG4441|consen 509 -----------------------------------------------------------------MTSPRSAVGVVVLGG 523 (571)
T ss_pred -----------------------------------------------------------------CccccccccEEEECC
Confidence 789999999999999
Q ss_pred eEEEecceEeecCeEEeecceeccccCCccceEEecc
Q 006384 465 TLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCIIP 501 (647)
Q Consensus 465 ~Lyi~GG~~e~g~~e~tl~D~~~ldl~~~d~w~~~~~ 501 (647)
.||+.||... .-.|+.+-+||..+ |+|+.+.+
T Consensus 524 ~ly~vGG~~~----~~~l~~ve~ydp~~-d~W~~~~~ 555 (571)
T KOG4441|consen 524 KLYAVGGFDG----NNNLNTVECYDPET-DTWTEVTE 555 (571)
T ss_pred EEEEEecccC----ccccceeEEcCCCC-CceeeCCC
Confidence 9999999542 24589999999999 99999887
No 8
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.3e-36 Score=324.23 Aligned_cols=281 Identities=21% Similarity=0.347 Sum_probs=219.2
Q ss_pred CCCCeEEEecCCC--CCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCC-CCCC-ccee
Q 006384 108 VEKQEWKVISSPN--SPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-CPSP-RSGH 183 (647)
Q Consensus 108 ~~~~~W~~l~s~~--~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~-~P~~-R~~h 183 (647)
+...+|..+.... .|.||.+|+++++++.||||||...... ...+++|+||+.+++|..+++.+ .|.. +.+|
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~----~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~ 79 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNE----HIDKDLYVFDFNTHTWSIAPANGDVPRISCLGV 79 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCC----ceeCcEEEEECCCCEEEEcCccCCCCCCccCce
Confidence 3567899987642 5889999999999999999999854321 24589999999999999988743 2332 3478
Q ss_pred EEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCccc
Q 006384 184 RMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKN 263 (647)
Q Consensus 184 ~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~ 263 (647)
++++++++||||||+... ..++++++||+.+++|+.++.+.....|.+|.+|++++++++||||||.... .
T Consensus 80 ~~~~~~~~iyv~GG~~~~----~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~--~--- 150 (341)
T PLN02153 80 RMVAVGTKLYIFGGRDEK----REFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKG--G--- 150 (341)
T ss_pred EEEEECCEEEEECCCCCC----CccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCC--C---
Confidence 999999999999998643 2478999999999999999876433458899999999999999999998643 0
Q ss_pred CCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcE
Q 006384 264 QSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (647)
Q Consensus 264 ~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (647)
.......++++++||+.+++|+.++.++.+|.+|.+|++++++++|||+||.......+. ......++|++||+.+++|
T Consensus 151 ~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG-~~~~~~~~v~~yd~~~~~W 229 (341)
T PLN02153 151 LMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGG-KSDYESNAVQFFDPASGKW 229 (341)
T ss_pred ccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCC-ccceecCceEEEEcCCCcE
Confidence 000112457899999999999999887777789999999999999999999753211000 0012368899999999999
Q ss_pred EEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhhcccccccccccCCcceeecCcee
Q 006384 344 YPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVL 423 (647)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (647)
+.+...+.
T Consensus 230 ~~~~~~g~------------------------------------------------------------------------ 237 (341)
T PLN02153 230 TEVETTGA------------------------------------------------------------------------ 237 (341)
T ss_pred EeccccCC------------------------------------------------------------------------
Confidence 99875210
Q ss_pred eeecCCCCCcccccccccccCCCCCcCCccccccceeeecCeEEEecceEeec-----CeEEeecceeccccCCccceEE
Q 006384 424 AAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEIN-----DQEITLDDLYSLNLSKLDEWKC 498 (647)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~g-----~~e~tl~D~~~ldl~~~d~w~~ 498 (647)
+|.+|..|+++++++.||||||..... .....++|+|.||+.+ +.|+.
T Consensus 238 --------------------------~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~-~~W~~ 290 (341)
T PLN02153 238 --------------------------KPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTET-LVWEK 290 (341)
T ss_pred --------------------------CCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCc-cEEEe
Confidence 599999999999999999999974210 1223478999999999 99998
Q ss_pred ecc
Q 006384 499 IIP 501 (647)
Q Consensus 499 ~~~ 501 (647)
+..
T Consensus 291 ~~~ 293 (341)
T PLN02153 291 LGE 293 (341)
T ss_pred ccC
Confidence 864
No 9
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=1.8e-36 Score=323.89 Aligned_cols=257 Identities=19% Similarity=0.296 Sum_probs=190.7
Q ss_pred CCCCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEEC--CCCeEEEecCCCCC-CCcceeEEEEECCEEEE
Q 006384 63 VPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDV--EKQEWKVISSPNSP-PPRSAHQAVSWKNYLYI 139 (647)
Q Consensus 63 ~~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~--~~~~W~~l~s~~~P-~~R~~ha~v~~~~~iyv 139 (647)
+++|.+|.+++++++ +++|||+||. . .+.+|+||+ .+++|..++++ | .+|..|++++++++|||
T Consensus 2 ~~lp~~~~~~~~~~~---~~~vyv~GG~--~------~~~~~~~d~~~~~~~W~~l~~~--p~~~R~~~~~~~~~~~iYv 68 (346)
T TIGR03547 2 PDLPVGFKNGTGAII---GDKVYVGLGS--A------GTSWYKLDLKKPSKGWQKIADF--PGGPRNQAVAAAIDGKLYV 68 (346)
T ss_pred CCCCccccCceEEEE---CCEEEEEccc--c------CCeeEEEECCCCCCCceECCCC--CCCCcccceEEEECCEEEE
Confidence 468899999888888 8999999995 1 257899996 57899999875 4 47999999999999999
Q ss_pred EeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEE-EECCEEEEEecccCCCC---------------
Q 006384 140 FGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMV-LYKHKIIVFGGFYDTLR--------------- 203 (647)
Q Consensus 140 ~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~-~~~~~lyv~GG~~~~~~--------------- 203 (647)
+||............++++|+||+.+++|+.++. .+|.+|.+|+++ +++++||++||+.....
T Consensus 69 ~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~-~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 147 (346)
T TIGR03547 69 FGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT-RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSE 147 (346)
T ss_pred EeCCCCCCCCCcceecccEEEEECCCCEEecCCC-CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccch
Confidence 9997543211112357899999999999999974 357888888877 78999999999853100
Q ss_pred ---------------ceeeeCcEEEEEcCCCceEEeccCCCCCCCC-CceeeeEEEeCCEEEEEecccCCCCCcccCCCC
Q 006384 204 ---------------EVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS-PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEK 267 (647)
Q Consensus 204 ---------------~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~-~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~ 267 (647)
...+++++++||+.+++|+.++++ |. +|.++++++++++|||+||....
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~-----p~~~r~~~~~~~~~~~iyv~GG~~~~---------- 212 (346)
T TIGR03547 148 PKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGEN-----PFLGTAGSAIVHKGNKLLLINGEIKP---------- 212 (346)
T ss_pred hhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccC-----CCCcCCCceEEEECCEEEEEeeeeCC----------
Confidence 001247899999999999999887 54 78999999999999999998543
Q ss_pred CceeeeEEEEe--CCCCeEEEeecCCCC----CCCceeeEEEEECCeEEEecceeccccCccc----cc----cccCCcE
Q 006384 268 GIIHSDLWSLD--PRTWEWSKVKKIGMP----PGPRAGFSMCVHKKRALLFGGVVDMEMKGDV----IM----SLFLNEL 333 (647)
Q Consensus 268 ~~~~~dv~~yd--~~t~~W~~v~~~g~~----P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~----~~----~~~~ndl 333 (647)
.....+++.|+ +.+++|+.++++..+ +..|.+|++++++++|||+||.+.....+.. .. ....+.+
T Consensus 213 ~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (346)
T TIGR03547 213 GLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSS 292 (346)
T ss_pred CccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEe
Confidence 12234555554 577899999876322 1223577788899999999998632110000 00 0012468
Q ss_pred EEEECCCCcEEEeEe
Q 006384 334 YGFQLDNHRWYPLEL 348 (647)
Q Consensus 334 ~~yd~~t~~W~~l~~ 348 (647)
.+||+.+++|+.+..
T Consensus 293 e~yd~~~~~W~~~~~ 307 (346)
T TIGR03547 293 EVYALDNGKWSKVGK 307 (346)
T ss_pred eEEEecCCcccccCC
Confidence 999999999987765
No 10
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1e-36 Score=343.08 Aligned_cols=265 Identities=13% Similarity=0.204 Sum_probs=221.3
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCc
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R 180 (647)
..+++||+.+++|..++++ |.+|.+|+++++++.|||+||..... ..++++++||+.+++|..+++ ||.+|
T Consensus 272 ~~v~~yd~~~~~W~~l~~m--p~~r~~~~~a~l~~~IYviGG~~~~~-----~~~~~v~~Yd~~~n~W~~~~~--m~~~R 342 (557)
T PHA02713 272 PCILVYNINTMEYSVISTI--PNHIINYASAIVDNEIIIAGGYNFNN-----PSLNKVYKINIENKIHVELPP--MIKNR 342 (557)
T ss_pred CCEEEEeCCCCeEEECCCC--CccccceEEEEECCEEEEEcCCCCCC-----CccceEEEEECCCCeEeeCCC--Ccchh
Confidence 4789999999999999874 67899999999999999999974221 146899999999999999988 89999
Q ss_pred ceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCC
Q 006384 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVST 260 (647)
Q Consensus 181 ~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~ 260 (647)
.+|++++++++||++||..+. ..++++++||+.+++|+.++++ |.+|.++++++++++|||+||.......
T Consensus 343 ~~~~~~~~~g~IYviGG~~~~----~~~~sve~Ydp~~~~W~~~~~m-----p~~r~~~~~~~~~g~IYviGG~~~~~~~ 413 (557)
T PHA02713 343 CRFSLAVIDDTIYAIGGQNGT----NVERTIECYTMGDDKWKMLPDM-----PIALSSYGMCVLDQYIYIIGGRTEHIDY 413 (557)
T ss_pred hceeEEEECCEEEEECCcCCC----CCCceEEEEECCCCeEEECCCC-----CcccccccEEEECCEEEEEeCCCccccc
Confidence 999999999999999998543 2478899999999999999988 8999999999999999999998642000
Q ss_pred ccc-------CCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcE
Q 006384 261 DKN-------QSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNEL 333 (647)
Q Consensus 261 ~~~-------~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl 333 (647)
... ........+.+++|||.+++|+.++++ |.+|.++++++++++|||+||.++. ....+.+
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m---~~~r~~~~~~~~~~~IYv~GG~~~~--------~~~~~~v 482 (557)
T PHA02713 414 TSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF---WTGTIRPGVVSHKDDIYVVCDIKDE--------KNVKTCI 482 (557)
T ss_pred ccccccccccccccccccceEEEECCCCCeEeecCCC---CcccccCcEEEECCEEEEEeCCCCC--------CccceeE
Confidence 000 000012357899999999999999875 7889999999999999999997631 1123568
Q ss_pred EEEECCC-CcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhhcccccccccccC
Q 006384 334 YGFQLDN-HRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECV 412 (647)
Q Consensus 334 ~~yd~~t-~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 412 (647)
++|||.+ ++|+.++.
T Consensus 483 e~Ydp~~~~~W~~~~~---------------------------------------------------------------- 498 (557)
T PHA02713 483 FRYNTNTYNGWELITT---------------------------------------------------------------- 498 (557)
T ss_pred EEecCCCCCCeeEccc----------------------------------------------------------------
Confidence 9999999 89998876
Q ss_pred CcceeecCceeeeecCCCCCcccccccccccCCCCCcCCccccccceeeecCeEEEecceEeecCeEEeecceeccccCC
Q 006384 413 PNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSK 492 (647)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~g~~e~tl~D~~~ldl~~ 492 (647)
||.+|..+++++++++|||+||... ...+.+||+.+
T Consensus 499 -------------------------------------m~~~r~~~~~~~~~~~iyv~Gg~~~-------~~~~e~yd~~~ 534 (557)
T PHA02713 499 -------------------------------------TESRLSALHTILHDNTIMMLHCYES-------YMLQDTFNVYT 534 (557)
T ss_pred -------------------------------------cCcccccceeEEECCEEEEEeeecc-------eeehhhcCccc
Confidence 7999999999999999999999853 23688999999
Q ss_pred ccceEEeccCC
Q 006384 493 LDEWKCIIPAS 503 (647)
Q Consensus 493 ~d~w~~~~~~~ 503 (647)
++|+.+.+..
T Consensus 535 -~~W~~~~~~~ 544 (557)
T PHA02713 535 -YEWNHICHQH 544 (557)
T ss_pred -ccccchhhhc
Confidence 9999988764
No 11
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=3.2e-36 Score=318.92 Aligned_cols=248 Identities=19% Similarity=0.309 Sum_probs=191.4
Q ss_pred CCCcceEEEEeccCCCEEEEEcCeecC------CCcceeeCcEEEEE-CC-CCeEEEecCCCCCCCcceeEEEEECCEEE
Q 006384 67 SPRSNCSLNINPLKETELILYGGEFYN------GNKTYVYGDLYRYD-VE-KQEWKVISSPNSPPPRSAHQAVSWKNYLY 138 (647)
Q Consensus 67 ~~R~~~s~~~~~~~~~~lyv~GG~~~~------g~~~~~~ndl~~yd-~~-~~~W~~l~s~~~P~~R~~ha~v~~~~~iy 138 (647)
..++++.++++ ++.|||+||..+. +.....++++|+|+ +. +.+|..+++ +|.+|..|+++++++.||
T Consensus 2 ~~~~g~~~~~~---~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~--lp~~r~~~~~~~~~~~ly 76 (323)
T TIGR03548 2 LGVAGCYAGII---GDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQ--LPYEAAYGASVSVENGIY 76 (323)
T ss_pred CceeeEeeeEE---CCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEccc--CCccccceEEEEECCEEE
Confidence 45788888888 8999999997543 22345788999996 33 237998876 468898888899999999
Q ss_pred EEeCCcCCCCCccccccCcEEEEECCCCcE----EEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEE
Q 006384 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQW----EQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVF 214 (647)
Q Consensus 139 v~GG~~~~~~~~~~~~~~dv~~yD~~t~~W----~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~y 214 (647)
++||..... .++++|+||+.+++| ..+++ +|.+|..|++++++++|||+||.... ..++++++|
T Consensus 77 viGG~~~~~------~~~~v~~~d~~~~~w~~~~~~~~~--lp~~~~~~~~~~~~~~iYv~GG~~~~----~~~~~v~~y 144 (323)
T TIGR03548 77 YIGGSNSSE------RFSSVYRITLDESKEELICETIGN--LPFTFENGSACYKDGTLYVGGGNRNG----KPSNKSYLF 144 (323)
T ss_pred EEcCCCCCC------CceeEEEEEEcCCceeeeeeEcCC--CCcCccCceEEEECCEEEEEeCcCCC----ccCceEEEE
Confidence 999975432 468999999999998 55555 78999999999999999999997532 247899999
Q ss_pred EcCCCceEEeccCCCCCCC-CCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCC-
Q 006384 215 DLDQFKWQEIKPRFGSMWP-SPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGM- 292 (647)
Q Consensus 215 D~~t~~W~~v~~~~~~~~P-~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~- 292 (647)
|+.+++|+.++++ | .+|..|++++++++|||+||.... ...++++||+.+++|+.++.+..
T Consensus 145 d~~~~~W~~~~~~-----p~~~r~~~~~~~~~~~iYv~GG~~~~------------~~~~~~~yd~~~~~W~~~~~~~~~ 207 (323)
T TIGR03548 145 NLETQEWFELPDF-----PGEPRVQPVCVKLQNELYVFGGGSNI------------AYTDGYKYSPKKNQWQKVADPTTD 207 (323)
T ss_pred cCCCCCeeECCCC-----CCCCCCcceEEEECCEEEEEcCCCCc------------cccceEEEecCCCeeEECCCCCCC
Confidence 9999999999877 4 478999999999999999998543 24578999999999999987632
Q ss_pred -CCCCceeeEE-EEECCeEEEecceeccccCcc-----------------------ccccccCCcEEEEECCCCcEEEeE
Q 006384 293 -PPGPRAGFSM-CVHKKRALLFGGVVDMEMKGD-----------------------VIMSLFLNELYGFQLDNHRWYPLE 347 (647)
Q Consensus 293 -~P~~R~~~s~-~~~~~~iyifGG~~~~~~~~~-----------------------~~~~~~~ndl~~yd~~t~~W~~l~ 347 (647)
.|.++.++++ ++.+++||||||.+....... .-...+.+++++||+.+++|+.++
T Consensus 208 ~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~ 287 (323)
T TIGR03548 208 SEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIG 287 (323)
T ss_pred CCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcc
Confidence 2444444444 445799999999864210000 000123578999999999999887
Q ss_pred e
Q 006384 348 L 348 (647)
Q Consensus 348 ~ 348 (647)
.
T Consensus 288 ~ 288 (323)
T TIGR03548 288 N 288 (323)
T ss_pred c
Confidence 5
No 12
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=1.4e-35 Score=319.99 Aligned_cols=307 Identities=19% Similarity=0.277 Sum_probs=228.2
Q ss_pred EEEEeccCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECC--CCeEEEecCCCCCCCcceeEEEE
Q 006384 55 KEVHVEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVE--KQEWKVISSPNSPPPRSAHQAVS 132 (647)
Q Consensus 55 ~~~~~~~~~~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~--~~~W~~l~s~~~P~~R~~ha~v~ 132 (647)
..+.+...+++|.||..++.+++ ++.|||+||. . .+.+|+||+. +++|..+++++ ..+|.+|++++
T Consensus 15 ~~~~~~~l~~lP~~~~~~~~~~~---~~~iyv~gG~--~------~~~~~~~d~~~~~~~W~~l~~~p-~~~r~~~~~v~ 82 (376)
T PRK14131 15 FAANAEQLPDLPVPFKNGTGAID---NNTVYVGLGS--A------GTSWYKLDLNAPSKGWTKIAAFP-GGPREQAVAAF 82 (376)
T ss_pred cceecccCCCCCcCccCCeEEEE---CCEEEEEeCC--C------CCeEEEEECCCCCCCeEECCcCC-CCCcccceEEE
Confidence 34556677899999998888888 8999999995 1 1358899986 47899988653 24899999999
Q ss_pred ECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEE-ECCEEEEEecccCCCC--------
Q 006384 133 WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVL-YKHKIIVFGGFYDTLR-------- 203 (647)
Q Consensus 133 ~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~-~~~~lyv~GG~~~~~~-------- 203 (647)
+++.|||+||............++++|+||+.+++|+.++. ..|.+|.+|++++ .+++||+|||......
T Consensus 83 ~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~-~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~ 161 (376)
T PRK14131 83 IDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDT-RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLA 161 (376)
T ss_pred ECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCC-CCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhh
Confidence 99999999998642111112357899999999999999985 2477888888877 8999999999753100
Q ss_pred ----------------------ceeeeCcEEEEEcCCCceEEeccCCCCCCC-CCceeeeEEEeCCEEEEEecccCCCCC
Q 006384 204 ----------------------EVRYYNDLYVFDLDQFKWQEIKPRFGSMWP-SPRSGFQFFVYQDEVFLYGGYSKEVST 260 (647)
Q Consensus 204 ----------------------~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P-~~R~~~s~~~~~~~Iyv~GG~~~~~~~ 260 (647)
.....+++++||+.+++|+.+.++ | .+|.+|++++++++|||+||....
T Consensus 162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~-----p~~~~~~~a~v~~~~~iYv~GG~~~~--- 233 (376)
T PRK14131 162 AAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGES-----PFLGTAGSAVVIKGNKLWLINGEIKP--- 233 (376)
T ss_pred hcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcC-----CCCCCCcceEEEECCEEEEEeeeECC---
Confidence 001357899999999999998877 5 478899999999999999997543
Q ss_pred cccCCCCCceeeeE--EEEeCCCCeEEEeecCCCCCCCc--------eeeEEEEECCeEEEecceeccccCccccccc--
Q 006384 261 DKNQSEKGIIHSDL--WSLDPRTWEWSKVKKIGMPPGPR--------AGFSMCVHKKRALLFGGVVDMEMKGDVIMSL-- 328 (647)
Q Consensus 261 ~~~~~~~~~~~~dv--~~yd~~t~~W~~v~~~g~~P~~R--------~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~-- 328 (647)
+....++ +.||+.+++|+.+..+ |.+| .++.+++++++|||+||.......++.....
T Consensus 234 -------~~~~~~~~~~~~~~~~~~W~~~~~~---p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~ 303 (376)
T PRK14131 234 -------GLRTDAVKQGKFTGNNLKWQKLPDL---PPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLY 303 (376)
T ss_pred -------CcCChhheEEEecCCCcceeecCCC---CCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcc
Confidence 1222334 4567889999999876 3333 3344677899999999976422110000000
Q ss_pred ------cCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhhcc
Q 006384 329 ------FLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEME 402 (647)
Q Consensus 329 ------~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 402 (647)
....+++||+.+++|+.+..
T Consensus 304 ~~~~~~~~~~~e~yd~~~~~W~~~~~------------------------------------------------------ 329 (376)
T PRK14131 304 AHEGLKKSWSDEIYALVNGKWQKVGE------------------------------------------------------ 329 (376)
T ss_pred cccCCcceeehheEEecCCcccccCc------------------------------------------------------
Confidence 01347799999999987754
Q ss_pred cccccccccCCcceeecCceeeeecCCCCCcccccccccccCCCCCcCCccccccceeeecCeEEEecceEeecCeEEee
Q 006384 403 SNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITL 482 (647)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~g~~e~tl 482 (647)
+|.+|..++++++++.|||+||....+ ..+
T Consensus 330 -----------------------------------------------lp~~r~~~~av~~~~~iyv~GG~~~~~---~~~ 359 (376)
T PRK14131 330 -----------------------------------------------LPQGLAYGVSVSWNNGVLLIGGETAGG---KAV 359 (376)
T ss_pred -----------------------------------------------CCCCccceEEEEeCCEEEEEcCCCCCC---cEe
Confidence 699999999999999999999975444 358
Q ss_pred cceeccccCCccceE
Q 006384 483 DDLYSLNLSKLDEWK 497 (647)
Q Consensus 483 ~D~~~ldl~~~d~w~ 497 (647)
+|+|.|++.. ..+.
T Consensus 360 ~~v~~~~~~~-~~~~ 373 (376)
T PRK14131 360 SDVTLLSWDG-KKLT 373 (376)
T ss_pred eeEEEEEEcC-CEEE
Confidence 8999998875 4443
No 13
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.9e-35 Score=332.80 Aligned_cols=244 Identities=13% Similarity=0.221 Sum_probs=208.5
Q ss_pred eccCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEE
Q 006384 59 VEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLY 138 (647)
Q Consensus 59 ~~~~~~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iy 138 (647)
|....++|.+|.+++++++ ++.|||+||.... ....+.+++||+.+++|..++++ |.+|..|++++++++||
T Consensus 284 W~~l~~mp~~r~~~~~a~l---~~~IYviGG~~~~---~~~~~~v~~Yd~~~n~W~~~~~m--~~~R~~~~~~~~~g~IY 355 (557)
T PHA02713 284 YSVISTIPNHIINYASAIV---DNEIIIAGGYNFN---NPSLNKVYKINIENKIHVELPPM--IKNRCRFSLAVIDDTIY 355 (557)
T ss_pred EEECCCCCccccceEEEEE---CCEEEEEcCCCCC---CCccceEEEEECCCCeEeeCCCC--cchhhceeEEEECCEEE
Confidence 4456789999999999999 8999999995211 22468999999999999999875 68999999999999999
Q ss_pred EEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCC--------------c
Q 006384 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLR--------------E 204 (647)
Q Consensus 139 v~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~--------------~ 204 (647)
++||.... ..++++++||+.+++|..+++ +|.+|.+|++++++++||++||...... .
T Consensus 356 viGG~~~~------~~~~sve~Ydp~~~~W~~~~~--mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 356 AIGGQNGT------NVERTIECYTMGDDKWKMLPD--MPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred EECCcCCC------CCCceEEEEECCCCeEEECCC--CCcccccccEEEECCEEEEEeCCCccccccccccccccccccc
Confidence 99997543 246889999999999999988 8999999999999999999999864210 0
Q ss_pred eeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCC-Ce
Q 006384 205 VRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT-WE 283 (647)
Q Consensus 205 ~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t-~~ 283 (647)
...++.+++|||.+++|+.++++ |.+|.++++++++++|||+||++.. ....+.+++|||.+ ++
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m-----~~~r~~~~~~~~~~~IYv~GG~~~~----------~~~~~~ve~Ydp~~~~~ 492 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNF-----WTGTIRPGVVSHKDDIYVVCDIKDE----------KNVKTCIFRYNTNTYNG 492 (557)
T ss_pred ccccceEEEECCCCCeEeecCCC-----CcccccCcEEEECCEEEEEeCCCCC----------CccceeEEEecCCCCCC
Confidence 11368899999999999999988 8899999999999999999998643 12335689999999 89
Q ss_pred EEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 284 WSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 284 W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
|+.++++ |.+|.++++++++++||++||..+ ...+.+||+.+++|+.+.+
T Consensus 493 W~~~~~m---~~~r~~~~~~~~~~~iyv~Gg~~~------------~~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 493 WELITTT---ESRLSALHTILHDNTIMMLHCYES------------YMLQDTFNVYTYEWNHICH 542 (557)
T ss_pred eeEcccc---CcccccceeEEECCEEEEEeeecc------------eeehhhcCcccccccchhh
Confidence 9999765 889999999999999999999865 2468999999999999887
No 14
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2.4e-35 Score=330.93 Aligned_cols=243 Identities=23% Similarity=0.395 Sum_probs=219.0
Q ss_pred eccCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEE
Q 006384 59 VEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLY 138 (647)
Q Consensus 59 ~~~~~~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iy 138 (647)
|....++|.+|..++++++ +|.||++||... ....++.+++||+.+++|..+++|+ .+|.+|+++++++.||
T Consensus 313 w~~~a~m~~~r~~~~~~~~---~~~lYv~GG~~~---~~~~l~~ve~YD~~~~~W~~~a~M~--~~R~~~~v~~l~g~iY 384 (571)
T KOG4441|consen 313 WSSLAPMPSPRCRVGVAVL---NGKLYVVGGYDS---GSDRLSSVERYDPRTNQWTPVAPMN--TKRSDFGVAVLDGKLY 384 (571)
T ss_pred EeecCCCCcccccccEEEE---CCEEEEEccccC---CCcccceEEEecCCCCceeccCCcc--CccccceeEEECCEEE
Confidence 4467889999999999999 899999999632 2346799999999999999998865 8999999999999999
Q ss_pred EEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCC
Q 006384 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (647)
Q Consensus 139 v~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (647)
++||.++. ..++++.+||+.+++|+.+++ |+.+|++|++++++++||++||...... +++++++|||.+
T Consensus 385 avGG~dg~------~~l~svE~YDp~~~~W~~va~--m~~~r~~~gv~~~~g~iYi~GG~~~~~~---~l~sve~YDP~t 453 (571)
T KOG4441|consen 385 AVGGFDGE------KSLNSVECYDPVTNKWTPVAP--MLTRRSGHGVAVLGGKLYIIGGGDGSSN---CLNSVECYDPET 453 (571)
T ss_pred EEeccccc------cccccEEEecCCCCcccccCC--CCcceeeeEEEEECCEEEEEcCcCCCcc---ccceEEEEcCCC
Confidence 99999854 357999999999999999998 8889999999999999999999876532 799999999999
Q ss_pred CceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCce
Q 006384 219 FKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRA 298 (647)
Q Consensus 219 ~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~ 298 (647)
++|+.+++| +.+|.+++++++++.||++||+++. .....+.+|||.+++|+.+.++ +.+|.
T Consensus 454 ~~W~~~~~M-----~~~R~~~g~a~~~~~iYvvGG~~~~-----------~~~~~VE~ydp~~~~W~~v~~m---~~~rs 514 (571)
T KOG4441|consen 454 NTWTLIAPM-----NTRRSGFGVAVLNGKIYVVGGFDGT-----------SALSSVERYDPETNQWTMVAPM---TSPRS 514 (571)
T ss_pred CceeecCCc-----ccccccceEEEECCEEEEECCccCC-----------CccceEEEEcCCCCceeEcccC---ccccc
Confidence 999999999 8999999999999999999999874 4456699999999999999765 78999
Q ss_pred eeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 299 GFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 299 ~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
.++++++++++|++||... ..+++.|..||+.+++|+.+..
T Consensus 515 ~~g~~~~~~~ly~vGG~~~---------~~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 515 AVGVVVLGGKLYAVGGFDG---------NNNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred cccEEEECCEEEEEecccC---------ccccceeEEcCCCCCceeeCCC
Confidence 9999999999999999765 5678999999999999999887
No 15
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=5.3e-35 Score=281.56 Aligned_cols=264 Identities=25% Similarity=0.455 Sum_probs=225.8
Q ss_pred CCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccC-----------CCCCCcceeEEEEECCE
Q 006384 123 PPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK-----------GCPSPRSGHRMVLYKHK 191 (647)
Q Consensus 123 ~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~-----------~~P~~R~~h~~~~~~~~ 191 (647)
+.|..|++++++..||-|||+.+...-. ..---||.+||..+..|+++++. ..|-.|++|+.+.++++
T Consensus 12 PrRVNHAavaVG~riYSFGGYCsGedy~-~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~ 90 (392)
T KOG4693|consen 12 PRRVNHAAVAVGSRIYSFGGYCSGEDYD-AKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDK 90 (392)
T ss_pred cccccceeeeecceEEecCCcccccccc-cCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcce
Confidence 5789999999999999999987654321 11124799999999999999871 11678999999999999
Q ss_pred EEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCcee
Q 006384 192 IIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIH 271 (647)
Q Consensus 192 lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~ 271 (647)
+||.||.++.. ...|.++.||+++++|.+.... +..|.+|-||+++++++.+|||||+... ...+.
T Consensus 91 ~yvWGGRND~e---gaCN~Ly~fDp~t~~W~~p~v~--G~vPgaRDGHsAcV~gn~MyiFGGye~~---------a~~FS 156 (392)
T KOG4693|consen 91 AYVWGGRNDDE---GACNLLYEFDPETNVWKKPEVE--GFVPGARDGHSACVWGNQMYIFGGYEED---------AQRFS 156 (392)
T ss_pred EEEEcCccCcc---cccceeeeecccccccccccee--eecCCccCCceeeEECcEEEEecChHHH---------HHhhh
Confidence 99999998742 3689999999999999987665 6679999999999999999999999766 34788
Q ss_pred eeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEecCC
Q 006384 272 SDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKE 351 (647)
Q Consensus 272 ~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~ 351 (647)
++++.||..+.+|+.+...|.||.-|-.|+++++++++|||||+.+....-.+....+.+.|..||+.|..|...+..
T Consensus 157 ~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~-- 234 (392)
T KOG4693|consen 157 QDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPEN-- 234 (392)
T ss_pred ccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCC--
Confidence 999999999999999999999999999999999999999999998866555566677889999999999999977541
Q ss_pred CcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhhcccccccccccCCcceeecCceeeeecCCCC
Q 006384 352 KSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKP 431 (647)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (647)
T Consensus 235 -------------------------------------------------------------------------------- 234 (392)
T KOG4693|consen 235 -------------------------------------------------------------------------------- 234 (392)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccccccccCCCCCcCCccccccceeeecCeEEEecceEeecCeEEeecceeccccCCccceEEeccC
Q 006384 432 YESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCIIPA 502 (647)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~g~~e~tl~D~~~ldl~~~d~w~~~~~~ 502 (647)
.++|.+|..|++.|.++.||||||+...=++ -++|||+||..+ -.|+.|.+.
T Consensus 235 ----------------~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~--HfndLy~FdP~t-~~W~~I~~~ 286 (392)
T KOG4693|consen 235 ----------------TMKPGGRRSHSTFVYNGKMYMFGGYNGTLNV--HFNDLYCFDPKT-SMWSVISVR 286 (392)
T ss_pred ----------------CcCCCcccccceEEEcceEEEecccchhhhh--hhcceeeccccc-chheeeecc
Confidence 1159999999999999999999999865444 479999999998 899998764
No 16
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=2.3e-34 Score=297.37 Aligned_cols=330 Identities=25% Similarity=0.454 Sum_probs=261.1
Q ss_pred ceEEEEeccCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEec-CCCCCCCcceeEEE
Q 006384 53 KKKEVHVEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVIS-SPNSPPPRSAHQAV 131 (647)
Q Consensus 53 ~~~~~~~~~~~~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~-s~~~P~~R~~ha~v 131 (647)
+|+.+.- ...+.|.||.+|.++++ ..-|+||||- +. -....+..||..+++|..-. .+..|++...|.++
T Consensus 18 rWrrV~~-~tGPvPrpRHGHRAVai---kELiviFGGG--NE---GiiDELHvYNTatnqWf~PavrGDiPpgcAA~Gfv 88 (830)
T KOG4152|consen 18 RWRRVQQ-STGPVPRPRHGHRAVAI---KELIVIFGGG--NE---GIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFV 88 (830)
T ss_pred ceEEEec-ccCCCCCccccchheee---eeeEEEecCC--cc---cchhhhhhhccccceeecchhcCCCCCchhhcceE
Confidence 4554443 55789999999999999 7889999992 22 26789999999999998433 34578888999999
Q ss_pred EECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCC-----CCCcceeEEEEECCEEEEEecccCCCCc--
Q 006384 132 SWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-----PSPRSGHRMVLYKHKIIVFGGFYDTLRE-- 204 (647)
Q Consensus 132 ~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~-----P~~R~~h~~~~~~~~lyv~GG~~~~~~~-- 204 (647)
..+.+||+|||..... .+.|++|-+-...-.|.++.+... |-||.+|+..+++++.|+|||......+
T Consensus 89 cdGtrilvFGGMvEYG-----kYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpk 163 (830)
T KOG4152|consen 89 CDGTRILVFGGMVEYG-----KYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPK 163 (830)
T ss_pred ecCceEEEEccEeeec-----cccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcc
Confidence 9999999999986553 367898877766667888766432 7899999999999999999998654432
Q ss_pred ---eeeeCcEEEEEcCCC----ceEEeccCCCCCCCCCceeeeEEEe------CCEEEEEecccCCCCCcccCCCCCcee
Q 006384 205 ---VRYYNDLYVFDLDQF----KWQEIKPRFGSMWPSPRSGFQFFVY------QDEVFLYGGYSKEVSTDKNQSEKGIIH 271 (647)
Q Consensus 205 ---~~~~~dv~~yD~~t~----~W~~v~~~~~~~~P~~R~~~s~~~~------~~~Iyv~GG~~~~~~~~~~~~~~~~~~ 271 (647)
.+|+||+|++++.-+ .|...-.. +..|.+|..|+++++ ..++|||||.++ ..+
T Consensus 164 nNvPrYLnDlY~leL~~Gsgvv~W~ip~t~--Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G------------~RL 229 (830)
T KOG4152|consen 164 NNVPRYLNDLYILELRPGSGVVAWDIPITY--GVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG------------CRL 229 (830)
T ss_pred cccchhhcceEEEEeccCCceEEEeccccc--CCCCCCcccceeEEEEeccCCcceEEEEccccc------------ccc
Confidence 349999999998743 48765444 567999999999998 458999999975 589
Q ss_pred eeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccC-----ccccccccCCcEEEEECCCCcEEEe
Q 006384 272 SDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMK-----GDVIMSLFLNELYGFQLDNHRWYPL 346 (647)
Q Consensus 272 ~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~-----~~~~~~~~~ndl~~yd~~t~~W~~l 346 (647)
.|+|.+|+.+.+|.+....|.+|.||+-|+++++++++|||||....-.. .+.-.-.+.+.+-++|+++..|..|
T Consensus 230 gDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl 309 (830)
T KOG4152|consen 230 GDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETL 309 (830)
T ss_pred cceeEEecceeecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeee
Confidence 99999999999999999999999999999999999999999998543221 1223345678899999999999998
Q ss_pred EecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhhcccccccccccCCcceeecCceeeee
Q 006384 347 ELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAK 426 (647)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (647)
-... .+|+
T Consensus 310 ~~d~------------------------------------~ed~------------------------------------ 317 (830)
T KOG4152|consen 310 LMDT------------------------------------LEDN------------------------------------ 317 (830)
T ss_pred eecc------------------------------------cccc------------------------------------
Confidence 8721 0000
Q ss_pred cCCCCCcccccccccccCCCCCcCCccccccceeeecCeEEEecceEee---cCeEEeecceeccccCCcc---ceEEec
Q 006384 427 SGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEI---NDQEITLDDLYSLNLSKLD---EWKCII 500 (647)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~---g~~e~tl~D~~~ldl~~~d---~w~~~~ 500 (647)
-+|.+|.+||++.++..|||+-|...- .+.++..-|||-||..+.. +.+.+.
T Consensus 318 ----------------------tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdTekPp~P~~VQL~r 375 (830)
T KOG4152|consen 318 ----------------------TIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDTEKPPPPARVQLVR 375 (830)
T ss_pred ----------------------ccccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhcccCCCCCceEEEEe
Confidence 069999999999999999999996533 4678999999999988754 344444
Q ss_pred cCCc
Q 006384 501 PASE 504 (647)
Q Consensus 501 ~~~~ 504 (647)
..+-
T Consensus 376 A~tN 379 (830)
T KOG4152|consen 376 ANTN 379 (830)
T ss_pred cccc
Confidence 4443
No 17
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=2e-33 Score=317.58 Aligned_cols=271 Identities=18% Similarity=0.263 Sum_probs=222.1
Q ss_pred CEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEE
Q 006384 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWML 161 (647)
Q Consensus 82 ~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~y 161 (647)
..+++.||.. . .+..+..|++..++|..++.. | .+..|+++++++.|||+||..... ...+++++|
T Consensus 251 ~~~~~~~g~~---~---~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~lyv~GG~~~~~-----~~~~~v~~y 316 (534)
T PHA03098 251 SIIYIHITMS---I---FTYNYITNYSPLSEINTIIDI--H-YVYCFGSVVLNNVIYFIGGMNKNN-----LSVNSVVSY 316 (534)
T ss_pred cceEeecccc---h---hhceeeecchhhhhcccccCc--c-ccccceEEEECCEEEEECCCcCCC-----CeeccEEEE
Confidence 4455556631 1 234566788888999987642 2 345678899999999999986432 246799999
Q ss_pred ECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeE
Q 006384 162 DLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQF 241 (647)
Q Consensus 162 D~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~ 241 (647)
|+.+++|..++. +|.+|.+|++++++++||++||... ...++++++||+.+++|+.++++ |.+|++|++
T Consensus 317 d~~~~~W~~~~~--~~~~R~~~~~~~~~~~lyv~GG~~~----~~~~~~v~~yd~~~~~W~~~~~l-----p~~r~~~~~ 385 (534)
T PHA03098 317 DTKTKSWNKVPE--LIYPRKNPGVTVFNNRIYVIGGIYN----SISLNTVESWKPGESKWREEPPL-----IFPRYNPCV 385 (534)
T ss_pred eCCCCeeeECCC--CCcccccceEEEECCEEEEEeCCCC----CEecceEEEEcCCCCceeeCCCc-----CcCCccceE
Confidence 999999999987 7889999999999999999999863 23678999999999999999887 889999999
Q ss_pred EEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccC
Q 006384 242 FVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMK 321 (647)
Q Consensus 242 ~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~ 321 (647)
++++++|||+||.... ...++++++||+.+++|+.+.++ |.+|.+|++++++++|||+||......
T Consensus 386 ~~~~~~iYv~GG~~~~----------~~~~~~v~~yd~~t~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~~~~- 451 (534)
T PHA03098 386 VNVNNLIYVIGGISKN----------DELLKTVECFSLNTNKWSKGSPL---PISHYGGCAIYHDGKIYVIGGISYIDN- 451 (534)
T ss_pred EEECCEEEEECCcCCC----------CcccceEEEEeCCCCeeeecCCC---CccccCceEEEECCEEEEECCccCCCC-
Confidence 9999999999997543 23468899999999999998764 789999999999999999999764221
Q ss_pred ccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhhc
Q 006384 322 GDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEM 401 (647)
Q Consensus 322 ~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 401 (647)
...++.+++||+.+++|+.++.
T Consensus 452 -----~~~~~~v~~yd~~~~~W~~~~~----------------------------------------------------- 473 (534)
T PHA03098 452 -----IKVYNIVESYNPVTNKWTELSS----------------------------------------------------- 473 (534)
T ss_pred -----CcccceEEEecCCCCceeeCCC-----------------------------------------------------
Confidence 1225679999999999998765
Q ss_pred ccccccccccCCcceeecCceeeeecCCCCCcccccccccccCCCCCcCCccccccceeeecCeEEEecceEeecCeEEe
Q 006384 402 ESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEIT 481 (647)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~g~~e~t 481 (647)
+|.||.++++++.++.|||+||.... ..
T Consensus 474 ------------------------------------------------~~~~r~~~~~~~~~~~iyv~GG~~~~----~~ 501 (534)
T PHA03098 474 ------------------------------------------------LNFPRINASLCIFNNKIYVVGGDKYE----YY 501 (534)
T ss_pred ------------------------------------------------CCcccccceEEEECCEEEEEcCCcCC----cc
Confidence 58889999999999999999998532 23
Q ss_pred ecceeccccCCccceEEeccC
Q 006384 482 LDDLYSLNLSKLDEWKCIIPA 502 (647)
Q Consensus 482 l~D~~~ldl~~~d~w~~~~~~ 502 (647)
+++++.||+.+ +.|+.+...
T Consensus 502 ~~~v~~yd~~~-~~W~~~~~~ 521 (534)
T PHA03098 502 INEIEVYDDKT-NTWTLFCKF 521 (534)
T ss_pred cceeEEEeCCC-CEEEecCCC
Confidence 78999999998 999988653
No 18
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=5.2e-33 Score=307.36 Aligned_cols=255 Identities=33% Similarity=0.592 Sum_probs=221.9
Q ss_pred CCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEec-CCCCCCCcceeEEEEECCEEEEE
Q 006384 62 NVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVIS-SPNSPPPRSAHQAVSWKNYLYIF 140 (647)
Q Consensus 62 ~~~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~-s~~~P~~R~~ha~v~~~~~iyv~ 140 (647)
....|.+|++|+++.+ ++++|||||........ -.++|+||..+..|.... ....|.+|++|++++++++||+|
T Consensus 54 ~~~~p~~R~~hs~~~~---~~~~~vfGG~~~~~~~~--~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lf 128 (482)
T KOG0379|consen 54 LGVGPIPRAGHSAVLI---GNKLYVFGGYGSGDRLT--DLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLF 128 (482)
T ss_pred CCCCcchhhccceeEE---CCEEEEECCCCCCCccc--cceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEE
Confidence 4568999999999999 89999999964322211 116999999999998654 45578899999999999999999
Q ss_pred eCCcCCCCCccccccCcEEEEECCCCcEEEcccCCC-CCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCC
Q 006384 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (647)
Q Consensus 141 GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~-P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (647)
||.... ..++++++.||+.|++|..+.+.+. |.+|.+|++++++++||||||...... .+|++|+||+.+.
T Consensus 129 GG~~~~-----~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~---~~ndl~i~d~~~~ 200 (482)
T KOG0379|consen 129 GGTDKK-----YRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGD---SLNDLHIYDLETS 200 (482)
T ss_pred ccccCC-----CCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCccc---ceeeeeeeccccc
Confidence 998752 2357999999999999999988776 999999999999999999999876432 7999999999999
Q ss_pred ceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCcee
Q 006384 220 KWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAG 299 (647)
Q Consensus 220 ~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~ 299 (647)
+|.++... +..|.||.+|+++++++++|||||.+.. ..+++|+|+||+.+..|.++...+..|.+|++
T Consensus 201 ~W~~~~~~--g~~P~pR~gH~~~~~~~~~~v~gG~~~~----------~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~ 268 (482)
T KOG0379|consen 201 TWSELDTQ--GEAPSPRYGHAMVVVGNKLLVFGGGDDG----------DVYLNDVHILDLSTWEWKLLPTGGDLPSPRSG 268 (482)
T ss_pred cceecccC--CCCCCCCCCceEEEECCeEEEEeccccC----------CceecceEeeecccceeeeccccCCCCCCcce
Confidence 99999887 5669999999999999999999998832 48999999999999999999999999999999
Q ss_pred eEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 300 FSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 300 ~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
|++++.+.+++||||..... ...+.++|.|++.+..|..+..
T Consensus 269 h~~~~~~~~~~l~gG~~~~~-------~~~l~~~~~l~~~~~~w~~~~~ 310 (482)
T KOG0379|consen 269 HSLTVSGDHLLLFGGGTDPK-------QEPLGDLYGLDLETLVWSKVES 310 (482)
T ss_pred eeeEEECCEEEEEcCCcccc-------cccccccccccccccceeeeec
Confidence 99999999999999986520 1258899999999999999987
No 19
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=4e-33 Score=308.29 Aligned_cols=258 Identities=31% Similarity=0.539 Sum_probs=224.5
Q ss_pred CCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCC-CCCcceeEEEEECCEEEEEe
Q 006384 118 SPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLYKHKIIVFG 196 (647)
Q Consensus 118 s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~-P~~R~~h~~~~~~~~lyv~G 196 (647)
....|.+|.+|+++.+++++|||||........ . .++|+||..+..|......+. |.+|++|.++.++++||+||
T Consensus 54 ~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~---~-~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfG 129 (482)
T KOG0379|consen 54 LGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLT---D-LDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFG 129 (482)
T ss_pred CCCCcchhhccceeEECCEEEEECCCCCCCccc---c-ceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEc
Confidence 345688999999999999999999987665431 1 169999999999999887765 89999999999999999999
Q ss_pred cccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEE
Q 006384 197 GFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWS 276 (647)
Q Consensus 197 G~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~ 276 (647)
|.... ...+++++.||+.|.+|..+.+. +.+|++|.+|++++++++||||||.... +..++++|+
T Consensus 130 G~~~~---~~~~~~l~~~d~~t~~W~~l~~~--~~~P~~r~~Hs~~~~g~~l~vfGG~~~~----------~~~~ndl~i 194 (482)
T KOG0379|consen 130 GTDKK---YRNLNELHSLDLSTRTWSLLSPT--GDPPPPRAGHSATVVGTKLVVFGGIGGT----------GDSLNDLHI 194 (482)
T ss_pred cccCC---CCChhheEeccCCCCcEEEecCc--CCCCCCcccceEEEECCEEEEECCccCc----------ccceeeeee
Confidence 98763 23589999999999999999887 4479999999999999999999999876 338999999
Q ss_pred EeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEecCCCcchh
Q 006384 277 LDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKD 356 (647)
Q Consensus 277 yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~ 356 (647)
||+.+.+|.++...|..|.||.+|++++++++++||||.+. ...+++|+|+||+.+..|..+...+.
T Consensus 195 ~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~--------~~~~l~D~~~ldl~~~~W~~~~~~g~----- 261 (482)
T KOG0379|consen 195 YDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDD--------GDVYLNDVHILDLSTWEWKLLPTGGD----- 261 (482)
T ss_pred eccccccceecccCCCCCCCCCCceEEEECCeEEEEecccc--------CCceecceEeeecccceeeeccccCC-----
Confidence 99999999999999999999999999999999999999872 15689999999999999996655210
Q ss_pred hhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhhcccccccccccCCcceeecCceeeeecCCCCCcccc
Q 006384 357 KLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKK 436 (647)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (647)
T Consensus 262 -------------------------------------------------------------------------------- 261 (482)
T KOG0379|consen 262 -------------------------------------------------------------------------------- 261 (482)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCCCcCCccccccceeeecCeEEEecceEeecCeEEeecceeccccCCccceEEeccCC
Q 006384 437 KSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCIIPAS 503 (647)
Q Consensus 437 ~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~g~~e~tl~D~~~ldl~~~d~w~~~~~~~ 503 (647)
.|.||+.|++++.+++++|+||.... ....|.|+|.|++.+ ..|..+....
T Consensus 262 -------------~p~~R~~h~~~~~~~~~~l~gG~~~~--~~~~l~~~~~l~~~~-~~w~~~~~~~ 312 (482)
T KOG0379|consen 262 -------------LPSPRSGHSLTVSGDHLLLFGGGTDP--KQEPLGDLYGLDLET-LVWSKVESVG 312 (482)
T ss_pred -------------CCCCcceeeeEEECCEEEEEcCCccc--ccccccccccccccc-cceeeeeccc
Confidence 59999999999999999999998643 112699999999997 9999988776
No 20
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=1.3e-32 Score=310.96 Aligned_cols=238 Identities=18% Similarity=0.308 Sum_probs=200.6
Q ss_pred CcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCC
Q 006384 69 RSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPN 148 (647)
Q Consensus 69 R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~ 148 (647)
+..|+++++ ++.|||+||... .....+++++||+.+++|..++++ |.+|.+|++++++++|||+||....
T Consensus 285 ~~~~~~~~~---~~~lyv~GG~~~---~~~~~~~v~~yd~~~~~W~~~~~~--~~~R~~~~~~~~~~~lyv~GG~~~~-- 354 (534)
T PHA03098 285 VYCFGSVVL---NNVIYFIGGMNK---NNLSVNSVVSYDTKTKSWNKVPEL--IYPRKNPGVTVFNNRIYVIGGIYNS-- 354 (534)
T ss_pred cccceEEEE---CCEEEEECCCcC---CCCeeccEEEEeCCCCeeeECCCC--CcccccceEEEECCEEEEEeCCCCC--
Confidence 445677777 899999999632 223568999999999999998764 5789999999999999999998632
Q ss_pred CccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCC
Q 006384 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (647)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (647)
..++++++||+.+++|+.+++ +|.+|++|++++++++|||+||..... ..++++++||+.+++|+.++++
T Consensus 355 ----~~~~~v~~yd~~~~~W~~~~~--lp~~r~~~~~~~~~~~iYv~GG~~~~~---~~~~~v~~yd~~t~~W~~~~~~- 424 (534)
T PHA03098 355 ----ISLNTVESWKPGESKWREEPP--LIFPRYNPCVVNVNNLIYVIGGISKND---ELLKTVECFSLNTNKWSKGSPL- 424 (534)
T ss_pred ----EecceEEEEcCCCCceeeCCC--cCcCCccceEEEECCEEEEECCcCCCC---cccceEEEEeCCCCeeeecCCC-
Confidence 246899999999999999987 889999999999999999999975432 2478999999999999999887
Q ss_pred CCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCe
Q 006384 229 GSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKR 308 (647)
Q Consensus 229 ~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~ 308 (647)
|.+|.+|++++++++|||+||.... . ....++.+++||+.+++|+.++.+ |.+|.++++++++++
T Consensus 425 ----p~~r~~~~~~~~~~~iyv~GG~~~~--~------~~~~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~~~ 489 (534)
T PHA03098 425 ----PISHYGGCAIYHDGKIYVIGGISYI--D------NIKVYNIVESYNPVTNKWTELSSL---NFPRINASLCIFNNK 489 (534)
T ss_pred ----CccccCceEEEECCEEEEECCccCC--C------CCcccceEEEecCCCCceeeCCCC---CcccccceEEEECCE
Confidence 8899999999999999999998643 0 112356699999999999999764 678999999999999
Q ss_pred EEEecceeccccCccccccccCCcEEEEECCCCcEEEeEecC
Q 006384 309 ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRK 350 (647)
Q Consensus 309 iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~ 350 (647)
|||+||... ..+.+++++||+.+++|+.+...+
T Consensus 490 iyv~GG~~~---------~~~~~~v~~yd~~~~~W~~~~~~p 522 (534)
T PHA03098 490 IYVVGGDKY---------EYYINEIEVYDDKTNTWTLFCKFP 522 (534)
T ss_pred EEEEcCCcC---------CcccceeEEEeCCCCEEEecCCCc
Confidence 999999865 234688999999999999987643
No 21
>PHA02790 Kelch-like protein; Provisional
Probab=99.97 E-value=1.4e-30 Score=289.26 Aligned_cols=208 Identities=17% Similarity=0.232 Sum_probs=181.7
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~ 160 (647)
++.||++||.. + ....+.+++|||.+++|..++++ |.+|..|++++++++||++||... .+.+++
T Consensus 271 ~~~lyviGG~~--~--~~~~~~v~~Ydp~~~~W~~~~~m--~~~r~~~~~v~~~~~iYviGG~~~---------~~sve~ 335 (480)
T PHA02790 271 GEVVYLIGGWM--N--NEIHNNAIAVNYISNNWIPIPPM--NSPRLYASGVPANNKLYVVGGLPN---------PTSVER 335 (480)
T ss_pred CCEEEEEcCCC--C--CCcCCeEEEEECCCCEEEECCCC--CchhhcceEEEECCEEEEECCcCC---------CCceEE
Confidence 79999999952 2 22567899999999999999885 589999999999999999999642 256899
Q ss_pred EECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeee
Q 006384 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240 (647)
Q Consensus 161 yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s 240 (647)
||+.+++|..+++ +|.+|.+|++++++++||++||.... .+.+++|||.+++|+.++++ |.+|.+++
T Consensus 336 ydp~~n~W~~~~~--l~~~r~~~~~~~~~g~IYviGG~~~~------~~~ve~ydp~~~~W~~~~~m-----~~~r~~~~ 402 (480)
T PHA02790 336 WFHGDAAWVNMPS--LLKPRCNPAVASINNVIYVIGGHSET------DTTTEYLLPNHDQWQFGPST-----YYPHYKSC 402 (480)
T ss_pred EECCCCeEEECCC--CCCCCcccEEEEECCEEEEecCcCCC------CccEEEEeCCCCEEEeCCCC-----CCccccce
Confidence 9999999999988 89999999999999999999997532 36799999999999999988 88999999
Q ss_pred EEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceecccc
Q 006384 241 FFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEM 320 (647)
Q Consensus 241 ~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~ 320 (647)
+++++++|||+||. +.+|||.+++|+.++++ |.+|.++++++++++||++||.+.
T Consensus 403 ~~~~~~~IYv~GG~-------------------~e~ydp~~~~W~~~~~m---~~~r~~~~~~v~~~~IYviGG~~~--- 457 (480)
T PHA02790 403 ALVFGRRLFLVGRN-------------------AEFYCESSNTWTLIDDP---IYPRDNPELIIVDNKLLLIGGFYR--- 457 (480)
T ss_pred EEEECCEEEEECCc-------------------eEEecCCCCcEeEcCCC---CCCccccEEEEECCEEEEECCcCC---
Confidence 99999999999983 45899999999999765 789999999999999999999863
Q ss_pred CccccccccCCcEEEEECCCCcEEEeE
Q 006384 321 KGDVIMSLFLNELYGFQLDNHRWYPLE 347 (647)
Q Consensus 321 ~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (647)
....+.+++||+.+++|+...
T Consensus 458 ------~~~~~~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 458 ------GSYIDTIEVYNNRTYSWNIWD 478 (480)
T ss_pred ------CcccceEEEEECCCCeEEecC
Confidence 223578999999999998754
No 22
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.97 E-value=1.7e-30 Score=275.13 Aligned_cols=236 Identities=19% Similarity=0.300 Sum_probs=181.7
Q ss_pred EeccCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeE----EEecCCCCCCCcceeEEEEE
Q 006384 58 HVEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW----KVISSPNSPPPRSAHQAVSW 133 (647)
Q Consensus 58 ~~~~~~~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W----~~l~s~~~P~~R~~ha~v~~ 133 (647)
.|....++|.+|..++++++ ++.|||+||.. +. ..++++++||+.+++| ..+++ +|.+|..|+++++
T Consensus 52 ~W~~~~~lp~~r~~~~~~~~---~~~lyviGG~~--~~--~~~~~v~~~d~~~~~w~~~~~~~~~--lp~~~~~~~~~~~ 122 (323)
T TIGR03548 52 KWVKDGQLPYEAAYGASVSV---ENGIYYIGGSN--SS--ERFSSVYRITLDESKEELICETIGN--LPFTFENGSACYK 122 (323)
T ss_pred eEEEcccCCccccceEEEEE---CCEEEEEcCCC--CC--CCceeEEEEEEcCCceeeeeeEcCC--CCcCccCceEEEE
Confidence 34456788999998888888 89999999962 22 2468999999999998 45544 5788999999999
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCC-CCcceeEEEEECCEEEEEecccCCCCceeeeCcEE
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCP-SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLY 212 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P-~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~ 212 (647)
+++|||+||.... ..++++++||+.+++|+.+++ +| .+|..|++++++++||||||.... ...+++
T Consensus 123 ~~~iYv~GG~~~~------~~~~~v~~yd~~~~~W~~~~~--~p~~~r~~~~~~~~~~~iYv~GG~~~~-----~~~~~~ 189 (323)
T TIGR03548 123 DGTLYVGGGNRNG------KPSNKSYLFNLETQEWFELPD--FPGEPRVQPVCVKLQNELYVFGGGSNI-----AYTDGY 189 (323)
T ss_pred CCEEEEEeCcCCC------ccCceEEEEcCCCCCeeECCC--CCCCCCCcceEEEECCEEEEEcCCCCc-----cccceE
Confidence 9999999997432 136899999999999999986 55 479999999999999999997532 246789
Q ss_pred EEEcCCCceEEeccCCCCCCCCCceeeeEE-EeCCEEEEEecccCCCCCcc---------------------cCCCCCce
Q 006384 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFF-VYQDEVFLYGGYSKEVSTDK---------------------NQSEKGII 270 (647)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~-~~~~~Iyv~GG~~~~~~~~~---------------------~~~~~~~~ 270 (647)
+||+.+++|+.+++++....|.++.+++.+ +.+++|||+||.+.....+. .......+
T Consensus 190 ~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (323)
T TIGR03548 190 KYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNW 269 (323)
T ss_pred EEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCc
Confidence 999999999999887433345555555544 44799999999864310000 00001123
Q ss_pred eeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceec
Q 006384 271 HSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVD 317 (647)
Q Consensus 271 ~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~ 317 (647)
.+++++||+.+++|+.+..+ +..+|.++++++++++||++||...
T Consensus 270 ~~~v~~yd~~~~~W~~~~~~--p~~~r~~~~~~~~~~~iyv~GG~~~ 314 (323)
T TIGR03548 270 NRKILIYNVRTGKWKSIGNS--PFFARCGAALLLTGNNIFSINGELK 314 (323)
T ss_pred CceEEEEECCCCeeeEcccc--cccccCchheEEECCEEEEEecccc
Confidence 46799999999999999753 2358999999999999999999754
No 23
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.97 E-value=1.2e-29 Score=271.24 Aligned_cols=257 Identities=20% Similarity=0.260 Sum_probs=187.2
Q ss_pred ccCCCCC-CCCcceEEEEeccCCCEEEEEcCeecCC--CcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEE-EECC
Q 006384 60 EDNVPAP-SPRSNCSLNINPLKETELILYGGEFYNG--NKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAV-SWKN 135 (647)
Q Consensus 60 ~~~~~~P-~~R~~~s~~~~~~~~~~lyv~GG~~~~g--~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v-~~~~ 135 (647)
...+++| .+|.+++++++ +++|||+||..... .....++++|+||+.+++|+.++. ..|.+|.+|+++ ++++
T Consensus 44 ~~l~~~p~~~R~~~~~~~~---~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~-~~p~~~~~~~~~~~~~g 119 (346)
T TIGR03547 44 QKIADFPGGPRNQAVAAAI---DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT-RSPVGLLGASGFSLHNG 119 (346)
T ss_pred eECCCCCCCCcccceEEEE---CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCC-CCCCcccceeEEEEeCC
Confidence 3456777 58999999999 89999999963221 112357899999999999999974 356778888777 6899
Q ss_pred EEEEEeCCcCCCC----------------------------CccccccCcEEEEECCCCcEEEcccCCCCC-CcceeEEE
Q 006384 136 YLYIFGGEFTSPN----------------------------QERFHHYKDFWMLDLKTNQWEQLNLKGCPS-PRSGHRMV 186 (647)
Q Consensus 136 ~iyv~GG~~~~~~----------------------------~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~-~R~~h~~~ 186 (647)
+|||+||...... ......++++++||+.+++|+.+++ +|. +|.+|+++
T Consensus 120 ~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~--~p~~~r~~~~~~ 197 (346)
T TIGR03547 120 QAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGE--NPFLGTAGSAIV 197 (346)
T ss_pred EEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECcc--CCCCcCCCceEE
Confidence 9999999753200 0000124789999999999999987 775 78999999
Q ss_pred EECCEEEEEecccCCCCceeeeCcEEEEE--cCCCceEEeccCCCCC--CCCCceeeeEEEeCCEEEEEecccCCCCCcc
Q 006384 187 LYKHKIIVFGGFYDTLREVRYYNDLYVFD--LDQFKWQEIKPRFGSM--WPSPRSGFQFFVYQDEVFLYGGYSKEVSTDK 262 (647)
Q Consensus 187 ~~~~~lyv~GG~~~~~~~~~~~~dv~~yD--~~t~~W~~v~~~~~~~--~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~ 262 (647)
+++++||||||..... .....++.|+ +.+++|+.+++++... .+..|.+|++++++++|||+||.... ...
T Consensus 198 ~~~~~iyv~GG~~~~~---~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~--~~~ 272 (346)
T TIGR03547 198 HKGNKLLLINGEIKPG---LRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFP--GAQ 272 (346)
T ss_pred EECCEEEEEeeeeCCC---ccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCC--Cch
Confidence 9999999999985432 1234566665 5678999999883211 12234577788899999999998632 000
Q ss_pred c-----C---CCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEE
Q 006384 263 N-----Q---SEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELY 334 (647)
Q Consensus 263 ~-----~---~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~ 334 (647)
. . ......+..+.+||+.+++|+.+..+ |.+|.++++++++++|||+||.+.. ...+++|+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~l---p~~~~~~~~~~~~~~iyv~GG~~~~--------~~~~~~v~ 341 (346)
T TIGR03547 273 ENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKL---PQGLAYGVSVSWNNGVLLIGGENSG--------GKAVTDVY 341 (346)
T ss_pred hhhhcCCccccCCCCceeEeeEEEecCCcccccCCC---CCCceeeEEEEcCCEEEEEeccCCC--------CCEeeeEE
Confidence 0 0 00001234688999999999999765 7889999988999999999998642 34578888
Q ss_pred EEEC
Q 006384 335 GFQL 338 (647)
Q Consensus 335 ~yd~ 338 (647)
.|-+
T Consensus 342 ~~~~ 345 (346)
T TIGR03547 342 LLSW 345 (346)
T ss_pred EEEe
Confidence 7643
No 24
>PHA02790 Kelch-like protein; Provisional
Probab=99.97 E-value=1e-29 Score=282.37 Aligned_cols=210 Identities=17% Similarity=0.246 Sum_probs=182.6
Q ss_pred EEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeC
Q 006384 130 AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYN 209 (647)
Q Consensus 130 ~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~ 209 (647)
++..++.||++||.... ...+.+++||+.+++|..+++ +|.+|..|++++++++||++||... .+
T Consensus 267 ~~~~~~~lyviGG~~~~------~~~~~v~~Ydp~~~~W~~~~~--m~~~r~~~~~v~~~~~iYviGG~~~-------~~ 331 (480)
T PHA02790 267 STHVGEVVYLIGGWMNN------EIHNNAIAVNYISNNWIPIPP--MNSPRLYASGVPANNKLYVVGGLPN-------PT 331 (480)
T ss_pred eEEECCEEEEEcCCCCC------CcCCeEEEEECCCCEEEECCC--CCchhhcceEEEECCEEEEECCcCC-------CC
Confidence 34589999999997532 246889999999999999998 8899999999999999999999742 25
Q ss_pred cEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeec
Q 006384 210 DLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (647)
Q Consensus 210 dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~ 289 (647)
++++||+.+++|+.++++ |.+|.+|++++++++|||+||.... .+.+.+|||.+++|+.+++
T Consensus 332 sve~ydp~~n~W~~~~~l-----~~~r~~~~~~~~~g~IYviGG~~~~-------------~~~ve~ydp~~~~W~~~~~ 393 (480)
T PHA02790 332 SVERWFHGDAAWVNMPSL-----LKPRCNPAVASINNVIYVIGGHSET-------------DTTTEYLLPNHDQWQFGPS 393 (480)
T ss_pred ceEEEECCCCeEEECCCC-----CCCCcccEEEEECCEEEEecCcCCC-------------CccEEEEeCCCCEEEeCCC
Confidence 789999999999999988 8899999999999999999997532 2468899999999999877
Q ss_pred CCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCch
Q 006384 290 IGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSS 369 (647)
Q Consensus 290 ~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~ 369 (647)
+ |.+|.++++++++++|||+||. +.+||+.+++|+.+++
T Consensus 394 m---~~~r~~~~~~~~~~~IYv~GG~-----------------~e~ydp~~~~W~~~~~--------------------- 432 (480)
T PHA02790 394 T---YYPHYKSCALVFGRRLFLVGRN-----------------AEFYCESSNTWTLIDD--------------------- 432 (480)
T ss_pred C---CCccccceEEEECCEEEEECCc-----------------eEEecCCCCcEeEcCC---------------------
Confidence 5 7899999999999999999983 4689999999998876
Q ss_pred hhhhccCchhhhhcccCcccchhhhhhhhhhcccccccccccCCcceeecCceeeeecCCCCCcccccccccccCCCCCc
Q 006384 370 ALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIV 449 (647)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (647)
T Consensus 433 -------------------------------------------------------------------------------- 432 (480)
T PHA02790 433 -------------------------------------------------------------------------------- 432 (480)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccceeeecCeEEEecceEeecCeEEeecceeccccCCccceEE
Q 006384 450 KPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKC 498 (647)
Q Consensus 450 ~P~~R~~~~~~v~~~~Lyi~GG~~e~g~~e~tl~D~~~ldl~~~d~w~~ 498 (647)
+|.||.++++++++++|||+||... . ..++.+..||+.+ |+|.-
T Consensus 433 m~~~r~~~~~~v~~~~IYviGG~~~--~--~~~~~ve~Yd~~~-~~W~~ 476 (480)
T PHA02790 433 PIYPRDNPELIIVDNKLLLIGGFYR--G--SYIDTIEVYNNRT-YSWNI 476 (480)
T ss_pred CCCCccccEEEEECCEEEEECCcCC--C--cccceEEEEECCC-CeEEe
Confidence 7899999999999999999999852 1 2368899999999 99953
No 25
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.97 E-value=2.6e-29 Score=271.35 Aligned_cols=258 Identities=21% Similarity=0.290 Sum_probs=189.1
Q ss_pred cCCCCC-CCCcceEEEEeccCCCEEEEEcCeecCC--CcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEE-ECCE
Q 006384 61 DNVPAP-SPRSNCSLNINPLKETELILYGGEFYNG--NKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVS-WKNY 136 (647)
Q Consensus 61 ~~~~~P-~~R~~~s~~~~~~~~~~lyv~GG~~~~g--~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~-~~~~ 136 (647)
..+++| .+|.+++++++ ++.||||||..... .....++++|+||+.+++|+.++++ .|.+|.+|++++ .+++
T Consensus 66 ~l~~~p~~~r~~~~~v~~---~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~-~p~~~~~~~~~~~~~~~ 141 (376)
T PRK14131 66 KIAAFPGGPREQAVAAFI---DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTR-SPVGLAGHVAVSLHNGK 141 (376)
T ss_pred ECCcCCCCCcccceEEEE---CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCC-CCCcccceEEEEeeCCE
Confidence 345555 58999999999 89999999963211 1124678999999999999999853 467788888877 7999
Q ss_pred EEEEeCCcCCCC----------------------------CccccccCcEEEEECCCCcEEEcccCCCCC-CcceeEEEE
Q 006384 137 LYIFGGEFTSPN----------------------------QERFHHYKDFWMLDLKTNQWEQLNLKGCPS-PRSGHRMVL 187 (647)
Q Consensus 137 iyv~GG~~~~~~----------------------------~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~-~R~~h~~~~ 187 (647)
|||+||...... ...+...+++++||+.+++|+.+.+ +|. +|.+|+++.
T Consensus 142 IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~--~p~~~~~~~a~v~ 219 (376)
T PRK14131 142 AYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGE--SPFLGTAGSAVVI 219 (376)
T ss_pred EEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCc--CCCCCCCcceEEE
Confidence 999999753100 0001124789999999999999887 664 788999999
Q ss_pred ECCEEEEEecccCCCCceeeeCcEE--EEEcCCCceEEeccCCCCCCCCCc--------eeeeEEEeCCEEEEEecccCC
Q 006384 188 YKHKIIVFGGFYDTLREVRYYNDLY--VFDLDQFKWQEIKPRFGSMWPSPR--------SGFQFFVYQDEVFLYGGYSKE 257 (647)
Q Consensus 188 ~~~~lyv~GG~~~~~~~~~~~~dv~--~yD~~t~~W~~v~~~~~~~~P~~R--------~~~s~~~~~~~Iyv~GG~~~~ 257 (647)
++++|||+||...... ....++ .||+.+++|..++++ |.+| .++.+++++++|||+||....
T Consensus 220 ~~~~iYv~GG~~~~~~---~~~~~~~~~~~~~~~~W~~~~~~-----p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~ 291 (376)
T PRK14131 220 KGNKLWLINGEIKPGL---RTDAVKQGKFTGNNLKWQKLPDL-----PPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFP 291 (376)
T ss_pred ECCEEEEEeeeECCCc---CChhheEEEecCCCcceeecCCC-----CCCCcCCcCCccceEeceeECCEEEEeeccCCC
Confidence 9999999999754321 234455 457789999999988 4443 334456789999999998643
Q ss_pred CCCcccCCCCC--------ceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCcccccccc
Q 006384 258 VSTDKNQSEKG--------IIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLF 329 (647)
Q Consensus 258 ~~~~~~~~~~~--------~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~ 329 (647)
........+ .....+.+||+.+++|+.+..+ |.+|.++++++++++||||||.... ...
T Consensus 292 --~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~l---p~~r~~~~av~~~~~iyv~GG~~~~--------~~~ 358 (376)
T PRK14131 292 --GARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGEL---PQGLAYGVSVSWNNGVLLIGGETAG--------GKA 358 (376)
T ss_pred --CChhhhhcCCcccccCCcceeehheEEecCCcccccCcC---CCCccceEEEEeCCEEEEEcCCCCC--------CcE
Confidence 100000000 0113467999999999988654 8899999999999999999997541 245
Q ss_pred CCcEEEEECCCCcEEE
Q 006384 330 LNELYGFQLDNHRWYP 345 (647)
Q Consensus 330 ~ndl~~yd~~t~~W~~ 345 (647)
.++|++|++..+.|+.
T Consensus 359 ~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 359 VSDVTLLSWDGKKLTV 374 (376)
T ss_pred eeeEEEEEEcCCEEEE
Confidence 7899999999887764
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=7.2e-30 Score=264.22 Aligned_cols=216 Identities=27% Similarity=0.572 Sum_probs=184.5
Q ss_pred CeEEEec--CCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCC-CCCcceeEEEE
Q 006384 111 QEWKVIS--SPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVL 187 (647)
Q Consensus 111 ~~W~~l~--s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~-P~~R~~h~~~~ 187 (647)
-.|+.+. .++.|.||.+|.++++..-|+||||-+.. ....+.+||..+++|......|. |.+...|+.+.
T Consensus 17 ~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEG-------iiDELHvYNTatnqWf~PavrGDiPpgcAA~Gfvc 89 (830)
T KOG4152|consen 17 VRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEG-------IIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVC 89 (830)
T ss_pred cceEEEecccCCCCCccccchheeeeeeEEEecCCccc-------chhhhhhhccccceeecchhcCCCCCchhhcceEe
Confidence 3688776 44568889999999999999999996654 56889999999999998776655 88888999999
Q ss_pred ECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccC--CCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCC
Q 006384 188 YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR--FGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQS 265 (647)
Q Consensus 188 ~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~--~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~ 265 (647)
.+.+||+|||+...++ |.|++|.+-...-.|.++.+. +.+.+|.||.||++.+++++-|+|||.... ....++
T Consensus 90 dGtrilvFGGMvEYGk---YsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNd--seDpkn 164 (830)
T KOG4152|consen 90 DGTRILVFGGMVEYGK---YSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLAND--SEDPKN 164 (830)
T ss_pred cCceEEEEccEeeecc---ccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEecccccc--ccCccc
Confidence 9999999999977654 899998887777888888765 356788999999999999999999999766 445556
Q ss_pred CCCceeeeEEEEeCCC----CeEEEeecCCCCCCCceeeEEEEE------CCeEEEecceeccccCccccccccCCcEEE
Q 006384 266 EKGIIHSDLWSLDPRT----WEWSKVKKIGMPPGPRAGFSMCVH------KKRALLFGGVVDMEMKGDVIMSLFLNELYG 335 (647)
Q Consensus 266 ~~~~~~~dv~~yd~~t----~~W~~v~~~g~~P~~R~~~s~~~~------~~~iyifGG~~~~~~~~~~~~~~~~ndl~~ 335 (647)
....+++|+|++++.. -.|......|..|.+|-.|+++++ ..+||||||.++ ..+.|||.
T Consensus 165 NvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G----------~RLgDLW~ 234 (830)
T KOG4152|consen 165 NVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG----------CRLGDLWT 234 (830)
T ss_pred ccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccc----------ccccceeE
Confidence 6778999999999763 479999888999999999999998 357999999875 56899999
Q ss_pred EECCCCcEEEeEe
Q 006384 336 FQLDNHRWYPLEL 348 (647)
Q Consensus 336 yd~~t~~W~~l~~ 348 (647)
+|+++..|.+...
T Consensus 235 Ldl~Tl~W~kp~~ 247 (830)
T KOG4152|consen 235 LDLDTLTWNKPSL 247 (830)
T ss_pred Eecceeecccccc
Confidence 9999999998877
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.78 E-value=9.1e-18 Score=169.89 Aligned_cols=258 Identities=20% Similarity=0.289 Sum_probs=188.0
Q ss_pred cCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCC--CeEEEecCCCCCCCcceeEEEEECCEEE
Q 006384 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEK--QEWKVISSPNSPPPRSAHQAVSWKNYLY 138 (647)
Q Consensus 61 ~~~~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~--~~W~~l~s~~~P~~R~~ha~v~~~~~iy 138 (647)
..+..|.+--+-+-..+ ++.+||-=|. .| ...|..|+.. ..|+.+..-+ -.+|....+++++++||
T Consensus 29 ~lPdlPvg~KnG~Ga~i---g~~~YVGLGs--~G------~afy~ldL~~~~k~W~~~a~Fp-G~~rnqa~~a~~~~kLy 96 (381)
T COG3055 29 QLPDLPVGFKNGAGALI---GDTVYVGLGS--AG------TAFYVLDLKKPGKGWTKIADFP-GGARNQAVAAVIGGKLY 96 (381)
T ss_pred cCCCCCcccccccccee---cceEEEEecc--CC------ccceehhhhcCCCCceEcccCC-CcccccchheeeCCeEE
Confidence 34667877766666667 7889986662 22 3667777765 5899998653 26799999999999999
Q ss_pred EEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECC-EEEEEecccCC----------------
Q 006384 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKH-KIIVFGGFYDT---------------- 201 (647)
Q Consensus 139 v~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~-~lyv~GG~~~~---------------- 201 (647)
||||...... .....++++|+||+.+++|.++.+.. |....+|.++.+++ +||++||.+..
T Consensus 97 vFgG~Gk~~~-~~~~~~nd~Y~y~p~~nsW~kl~t~s-P~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~ 174 (381)
T COG3055 97 VFGGYGKSVS-SSPQVFNDAYRYDPSTNSWHKLDTRS-PTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDK 174 (381)
T ss_pred EeeccccCCC-CCceEeeeeEEecCCCChhheecccc-ccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccH
Confidence 9999865544 23457899999999999999998843 88888999999987 99999998632
Q ss_pred --------------CCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCC
Q 006384 202 --------------LREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEK 267 (647)
Q Consensus 202 --------------~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~ 267 (647)
..+..+...++.|+|.+++|+.+...| -.++++.+.+.-++.|.++-|.-..
T Consensus 175 ~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~p----f~~~aGsa~~~~~n~~~lInGEiKp---------- 240 (381)
T COG3055 175 EAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENP----FYGNAGSAVVIKGNKLTLINGEIKP---------- 240 (381)
T ss_pred HHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCc----ccCccCcceeecCCeEEEEcceecC----------
Confidence 111235678999999999999987552 4677886666668889999998765
Q ss_pred CceeeeEEEEeCC--CCeEEEeecCCCCC----CCceeeEEEEECCeEEEecceeccccCc----------cccccccCC
Q 006384 268 GIIHSDLWSLDPR--TWEWSKVKKIGMPP----GPRAGFSMCVHKKRALLFGGVVDMEMKG----------DVIMSLFLN 331 (647)
Q Consensus 268 ~~~~~dv~~yd~~--t~~W~~v~~~g~~P----~~R~~~s~~~~~~~iyifGG~~~~~~~~----------~~~~~~~~n 331 (647)
+.....+++++.. ..+|..+.....++ ....|+-.-..++.+++.||.+-..... +.+.-.+.+
T Consensus 241 GLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~ 320 (381)
T COG3055 241 GLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNS 320 (381)
T ss_pred CccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhc
Confidence 4556667777764 56899996652222 1223333344578899999876543221 135566778
Q ss_pred cEEEEECCCCcEEEeEe
Q 006384 332 ELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 332 dl~~yd~~t~~W~~l~~ 348 (647)
+||+|| ++.|..+..
T Consensus 321 ~Vy~~d--~g~Wk~~Ge 335 (381)
T COG3055 321 EVYIFD--NGSWKIVGE 335 (381)
T ss_pred eEEEEc--CCceeeecc
Confidence 899999 889998775
No 28
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.78 E-value=3.6e-20 Score=192.49 Aligned_cols=264 Identities=22% Similarity=0.359 Sum_probs=189.5
Q ss_pred CCCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCC-CCCCcceeEEEEECC--EEEEE
Q 006384 64 PAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN-SPPPRSAHQAVSWKN--YLYIF 140 (647)
Q Consensus 64 ~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~-~P~~R~~ha~v~~~~--~iyv~ 140 (647)
.-|..|.+|.++..+- ++-||++|| ++|.+ -+.|+|.|+...+.|..+.... .|..|+.|.+|..-. +||+.
T Consensus 256 ~~p~~RgGHQMV~~~~-~~CiYLYGG--WdG~~--~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLl 330 (723)
T KOG2437|consen 256 NRPGMRGGHQMVIDVQ-TECVYLYGG--WDGTQ--DLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLL 330 (723)
T ss_pred cCccccCcceEEEeCC-CcEEEEecC--cccch--hHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhh
Confidence 4689999999999963 479999999 67755 4689999999999999887554 789999999998854 89999
Q ss_pred eCCcCCCCCccccccCcEEEEECCCCcEEEcccC----CCCCCcceeEEEEECCE--EEEEecccCCCCceeeeCcEEEE
Q 006384 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK----GCPSPRSGHRMVLYKHK--IIVFGGFYDTLREVRYYNDLYVF 214 (647)
Q Consensus 141 GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~----~~P~~R~~h~~~~~~~~--lyv~GG~~~~~~~~~~~~dv~~y 214 (647)
|-+..+...+.+..-.|+|+||..++.|..+.-. |.|...+.|.|++...+ ||||||..-.-. ...+..+|.|
T Consensus 331 G~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~-e~~f~GLYaf 409 (723)
T KOG2437|consen 331 GRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCN-EPQFSGLYAF 409 (723)
T ss_pred hhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCC-CccccceEEE
Confidence 9988776665566678999999999999988642 34889999999999877 999999854322 2357889999
Q ss_pred EcCCCceEEeccCCCC-----CCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEe
Q 006384 215 DLDQFKWQEIKPRFGS-----MWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (647)
Q Consensus 215 D~~t~~W~~v~~~~~~-----~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v 287 (647)
|+....|..+...... ..-..|.+|+|-.+ +..+|++||.... +-++-.+.|++....=..+
T Consensus 410 ~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~-----------~El~L~f~y~I~~E~~~~~ 478 (723)
T KOG2437|consen 410 NCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSK-----------TELNLFFSYDIDSEHVDII 478 (723)
T ss_pred ecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccc-----------eEEeehhcceeccccchhh
Confidence 9999999877543111 11246888888776 7899999998765 5566677777544332222
Q ss_pred ec-----CCCCCCCceeeEEEEE---CCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 288 KK-----IGMPPGPRAGFSMCVH---KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 288 ~~-----~g~~P~~R~~~s~~~~---~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
.. ....|++ ....-+.. .+.|.+.-|........ .....|.+|+|++.++.|..+..
T Consensus 479 s~~~k~dsS~~pS~-~f~qRs~~dp~~~~i~~~~G~~~~~~~~---e~~~rns~wi~~i~~~~w~cI~~ 543 (723)
T KOG2437|consen 479 SDGTKKDSSMVPST-GFTQRATIDPELNEIHVLSGLSKDKEKR---EENVRNSFWIYDIVRNSWSCIYK 543 (723)
T ss_pred hccCcCccccCCCc-chhhhcccCCCCcchhhhcccchhccCc---cccccCcEEEEEecccchhhHhh
Confidence 11 0112222 11111222 35566655554322211 13357899999999999987765
No 29
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.63 E-value=1.2e-14 Score=147.37 Aligned_cols=253 Identities=20% Similarity=0.289 Sum_probs=177.3
Q ss_pred CCCCCcceEEEEeccCCCEEEEEcCeecCC-CcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECC-EEEEEeC
Q 006384 65 APSPRSNCSLNINPLKETELILYGGEFYNG-NKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKN-YLYIFGG 142 (647)
Q Consensus 65 ~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g-~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~-~iyv~GG 142 (647)
|-.+|.+...+++ +++||||||..-.. .....++++|+|||.+++|.++... .|....+|+++.+++ .||++||
T Consensus 79 pG~~rnqa~~a~~---~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~-sP~gl~G~~~~~~~~~~i~f~GG 154 (381)
T COG3055 79 PGGARNQAVAAVI---GGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTR-SPTGLVGASTFSLNGTKIYFFGG 154 (381)
T ss_pred CCcccccchheee---CCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccc-cccccccceeEecCCceEEEEcc
Confidence 4467899999999 89999999974332 2356899999999999999999865 366678888888876 9999999
Q ss_pred CcCC----------------------------CCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEE
Q 006384 143 EFTS----------------------------PNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIV 194 (647)
Q Consensus 143 ~~~~----------------------------~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv 194 (647)
.+.. .....+...+.|+.|+|.++.|+.+...+ -.++++++.+.-+++|.+
T Consensus 155 vn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~p-f~~~aGsa~~~~~n~~~l 233 (381)
T COG3055 155 VNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENP-FYGNAGSAVVIKGNKLTL 233 (381)
T ss_pred ccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCc-ccCccCcceeecCCeEEE
Confidence 6322 11123455778999999999999987521 356777666666888999
Q ss_pred EecccCCCCceeeeCcEEEEEcC--CCceEEeccCCCCC--CCCCceeeeEEEeCCEEEEEecccCCCCCccc-------
Q 006384 195 FGGFYDTLREVRYYNDLYVFDLD--QFKWQEIKPRFGSM--WPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKN------- 263 (647)
Q Consensus 195 ~GG~~~~~~~~~~~~dv~~yD~~--t~~W~~v~~~~~~~--~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~------- 263 (647)
+-|....+- ....+++++.. ..+|..+...+... .+....|+-.-..++.++|.||.... ....
T Consensus 234 InGEiKpGL---Rt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~--Ga~~~y~~Gk~ 308 (381)
T COG3055 234 INGEIKPGL---RTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFP--GALKAYKNGKF 308 (381)
T ss_pred EcceecCCc---cccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCCh--hHHHHHHhccc
Confidence 988755432 24456666665 56799997763211 11233344444458899999987543 1100
Q ss_pred ---CCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCC
Q 006384 264 ---QSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (647)
Q Consensus 264 ---~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (647)
..-.-..+.+||.|| .+.|..+ |.+|.++.+-.++..++.||++||.+.. +.....++.+-...
T Consensus 309 ~AH~Gl~K~w~~~Vy~~d--~g~Wk~~---GeLp~~l~YG~s~~~nn~vl~IGGE~~~--------Gka~~~v~~l~~~g 375 (381)
T COG3055 309 YAHEGLSKSWNSEVYIFD--NGSWKIV---GELPQGLAYGVSLSYNNKVLLIGGETSG--------GKATTRVYSLSWDG 375 (381)
T ss_pred ccccchhhhhhceEEEEc--CCceeee---cccCCCccceEEEecCCcEEEEccccCC--------CeeeeeEEEEEEcC
Confidence 111224567899999 8899998 4568888888888889999999998763 34455666655443
No 30
>PF13422 DUF4110: Domain of unknown function (DUF4110)
Probab=99.59 E-value=4.4e-16 Score=131.41 Aligned_cols=46 Identities=46% Similarity=0.619 Sum_probs=43.4
Q ss_pred HhcCCCCCCCCCCCCCcHHHHHHhhHHHHHHHHHhccc--ccCcEEee
Q 006384 587 ANLGLSDSQRTPMPGESLKDFYRRTSMYWQMAAHEHTQ--HTGKVIWF 632 (647)
Q Consensus 587 ~~~~~~~~~~tp~~~e~l~~f~~rt~~~w~~~~~~~~~--~~~~~~~~ 632 (647)
++++++|.+|||+||||||+||+||++||+++|+++++ ++||+||-
T Consensus 1 ~~~~~~d~~ptP~p~EsLr~Ff~RT~~~W~~~a~~~~~~~~~~KeLrk 48 (96)
T PF13422_consen 1 EQPDLDDWLPTPKPFESLRDFFARTSEYWQEWAIESNRDAHRGKELRK 48 (96)
T ss_pred CCCCCccCCCCCCCCCcHHHHHHHhHHHHHHHHHHccccccchHHHHH
Confidence 36899999999999999999999999999999999999 88999984
No 31
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.51 E-value=6.5e-15 Score=153.72 Aligned_cols=207 Identities=26% Similarity=0.461 Sum_probs=156.8
Q ss_pred CCeEEEecCC--------CCCCCcceeEEEEEC--CEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCC-CCC
Q 006384 110 KQEWKVISSP--------NSPPPRSAHQAVSWK--NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-CPS 178 (647)
Q Consensus 110 ~~~W~~l~s~--------~~P~~R~~ha~v~~~--~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~-~P~ 178 (647)
+-.|.+++.. ..|..|.+|++|... +.||++||.++.. -+.|+|.|+...+.|+.+...+ .|.
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~------~l~DFW~Y~v~e~~W~~iN~~t~~PG 311 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQ------DLADFWAYSVKENQWTCINRDTEGPG 311 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccch------hHHHHHhhcCCcceeEEeecCCCCCc
Confidence 4567766532 368899999999985 4999999998764 4799999999999999987755 499
Q ss_pred CcceeEEEEECC--EEEEEecccCCCCcee--eeCcEEEEEcCCCceEEeccCCC-CCCCCCceeeeEEEeCCE--EEEE
Q 006384 179 PRSGHRMVLYKH--KIIVFGGFYDTLREVR--YYNDLYVFDLDQFKWQEIKPRFG-SMWPSPRSGFQFFVYQDE--VFLY 251 (647)
Q Consensus 179 ~R~~h~~~~~~~--~lyv~GG~~~~~~~~~--~~~dv~~yD~~t~~W~~v~~~~~-~~~P~~R~~~s~~~~~~~--Iyv~ 251 (647)
.|+.|+|+..-. +||+.|-+-+..+.+. ...|+|+||..++.|..+..... ...|...+.|+|++..++ ||||
T Consensus 312 ~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVf 391 (723)
T KOG2437|consen 312 ARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVF 391 (723)
T ss_pred chhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEe
Confidence 999999998754 9999999876554332 45799999999999999876532 134888999999999766 9999
Q ss_pred ecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecC-----C--CCCCCceeeEEEEE--CCeEEEecceeccccCc
Q 006384 252 GGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI-----G--MPPGPRAGFSMCVH--KKRALLFGGVVDMEMKG 322 (647)
Q Consensus 252 GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~-----g--~~P~~R~~~s~~~~--~~~iyifGG~~~~~~~~ 322 (647)
||..... ....+.-+|.|+.....|..++.- + ..-..|.+|.|-+. +..+|+|||...
T Consensus 392 GGr~~~~--------~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s----- 458 (723)
T KOG2437|consen 392 GGRILTC--------NEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRS----- 458 (723)
T ss_pred cCeeccC--------CCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCccc-----
Confidence 9987551 124566799999999999987431 0 01245888887665 678999999754
Q ss_pred cccccccCCcEEEEECC
Q 006384 323 DVIMSLFLNELYGFQLD 339 (647)
Q Consensus 323 ~~~~~~~~ndl~~yd~~ 339 (647)
.+-++=++.||+.
T Consensus 459 ----~~El~L~f~y~I~ 471 (723)
T KOG2437|consen 459 ----KTELNLFFSYDID 471 (723)
T ss_pred ----ceEEeehhcceec
Confidence 1224445666654
No 32
>PF13964 Kelch_6: Kelch motif
Probab=98.98 E-value=1.1e-09 Score=82.32 Aligned_cols=50 Identities=42% Similarity=0.591 Sum_probs=44.6
Q ss_pred CcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCc
Q 006384 124 PRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (647)
Q Consensus 124 ~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R 180 (647)
||.+|++++++++||||||.... ...++++|+||+.+++|+.+++ ||.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~-----~~~~~~v~~yd~~t~~W~~~~~--mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNS-----GKYSNDVERYDPETNTWEQLPP--MPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCC-----CCccccEEEEcCCCCcEEECCC--CCCCC
Confidence 68999999999999999998774 2357999999999999999988 88887
No 33
>PF13964 Kelch_6: Kelch motif
Probab=98.94 E-value=1.4e-09 Score=81.79 Aligned_cols=50 Identities=40% Similarity=0.833 Sum_probs=44.6
Q ss_pred CcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCc
Q 006384 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPR 236 (647)
Q Consensus 179 ~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R 236 (647)
||.+|++++++++||||||.... ..+++++++||+.+++|++++++ |.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~---~~~~~~v~~yd~~t~~W~~~~~m-----p~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNS---GKYSNDVERYDPETNTWEQLPPM-----PTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCC---CCccccEEEEcCCCCcEEECCCC-----CCCC
Confidence 69999999999999999998764 34789999999999999999988 6665
No 34
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.79 E-value=1.3e-08 Score=76.13 Aligned_cols=49 Identities=39% Similarity=0.786 Sum_probs=41.6
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY 188 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~ 188 (647)
+++||||||...... ..++++|+||+.+++|+++.. +|.+|++|+++++
T Consensus 1 g~~~~vfGG~~~~~~----~~~nd~~~~~~~~~~W~~~~~--~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGG----TRLNDVWVFDLDTNTWTRIGD--LPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCC----CEecCEEEEECCCCEEEECCC--CCCCccceEEEEC
Confidence 578999999874222 368999999999999999955 7999999999874
No 35
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.79 E-value=6.9e-07 Score=88.67 Aligned_cols=195 Identities=18% Similarity=0.229 Sum_probs=118.7
Q ss_pred ceEEEEeccC-CCCCCCCcceEEEE-eccCC--CEEEEEcCeecCCCcceeeCcEEEEECCCCe-EEEec--------CC
Q 006384 53 KKKEVHVEDN-VPAPSPRSNCSLNI-NPLKE--TELILYGGEFYNGNKTYVYGDLYRYDVEKQE-WKVIS--------SP 119 (647)
Q Consensus 53 ~~~~~~~~~~-~~~P~~R~~~s~~~-~~~~~--~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~-W~~l~--------s~ 119 (647)
+.+.+..... .-+|+.|.-+.+.+ .|..+ ...+|-||+..|.. ..+.+|........ =++++ .+
T Consensus 6 kLrp~sFsndSCYLPPLR~PAv~~~~~~~~~~~~~YlIHGGrTPNNE---lS~~LY~ls~~s~~cNkK~tl~C~EKeLvG 82 (337)
T PF03089_consen 6 KLRPISFSNDSCYLPPLRCPAVCHLSDPSDGEPEQYLIHGGRTPNNE---LSSSLYILSVDSRGCNKKVTLCCQEKELVG 82 (337)
T ss_pred eecceeecCCcccCCCCCCccEeeecCCCCCCeeeEEecCCcCCCcc---cccceEEEEeecCCCCceeEEEEecceecC
Confidence 3344444333 46777777666555 33222 24566788755443 67788988776543 11111 24
Q ss_pred CCCCCcceeEEEEE----CCEEEEEeCCcCCCCCc--------cccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEE
Q 006384 120 NSPPPRSAHQAVSW----KNYLYIFGGEFTSPNQE--------RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVL 187 (647)
Q Consensus 120 ~~P~~R~~ha~v~~----~~~iyv~GG~~~~~~~~--------~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~ 187 (647)
..|.+|++|++.++ +..+++|||...-+..+ ...+...|+.+|+.-+.++....+.+....++|.+..
T Consensus 83 dvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvsla 162 (337)
T PF03089_consen 83 DVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLA 162 (337)
T ss_pred CCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEe
Confidence 57999999999877 35689999975433221 1234557899999998887766544567889999999
Q ss_pred ECCEEEEEecccCCCCceeeeCcEEEEEcC--C-CceEEeccCCCCCCCCCceeeeEEEe---CCEEEEEecccCC
Q 006384 188 YKHKIIVFGGFYDTLREVRYYNDLYVFDLD--Q-FKWQEIKPRFGSMWPSPRSGFQFFVY---QDEVFLYGGYSKE 257 (647)
Q Consensus 188 ~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~--t-~~W~~v~~~~~~~~P~~R~~~s~~~~---~~~Iyv~GG~~~~ 257 (647)
-++.+|++||..-... .....++++-.+ . .-+-..... +.+.+-.++.+. .+..+|+|||...
T Consensus 163 r~D~VYilGGHsl~sd--~Rpp~l~rlkVdLllGSP~vsC~vl-----~~glSisSAIvt~~~~~e~iIlGGY~sd 231 (337)
T PF03089_consen 163 RNDCVYILGGHSLESD--SRPPRLYRLKVDLLLGSPAVSCTVL-----QGGLSISSAIVTQTGPHEYIILGGYQSD 231 (337)
T ss_pred cCceEEEEccEEccCC--CCCCcEEEEEEeecCCCceeEEEEC-----CCCceEeeeeEeecCCCceEEEeccccc
Confidence 9999999999864321 122344544322 1 112222222 333444444433 6789999999766
No 36
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.75 E-value=2.6e-08 Score=74.59 Aligned_cols=49 Identities=29% Similarity=0.592 Sum_probs=40.8
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW 133 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~ 133 (647)
+++||||||... .....++++|+||+.+++|+.++ ..|.+|++|+++++
T Consensus 1 g~~~~vfGG~~~--~~~~~~nd~~~~~~~~~~W~~~~--~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDD--DGGTRLNDVWVFDLDTNTWTRIG--DLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCC--CCCCEecCEEEEECCCCEEEECC--CCCCCccceEEEEC
Confidence 479999999642 33457899999999999999994 46899999999874
No 37
>PF13854 Kelch_5: Kelch motif
Probab=98.69 E-value=1.1e-08 Score=73.83 Aligned_cols=41 Identities=29% Similarity=0.559 Sum_probs=35.5
Q ss_pred CCccccccceeeecCeEEEecceEeecCeEEeecceeccccCC
Q 006384 450 KPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSK 492 (647)
Q Consensus 450 ~P~~R~~~~~~v~~~~Lyi~GG~~e~g~~e~tl~D~~~ldl~~ 492 (647)
+|.||.+|++++.++.||||||... .....++|+|.|||.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~--~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSG--NNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccC--CCCCEECcEEEEECCC
Confidence 4999999999999999999999974 2335699999999975
No 38
>PLN02772 guanylate kinase
Probab=98.67 E-value=9.9e-08 Score=101.21 Aligned_cols=88 Identities=20% Similarity=0.314 Sum_probs=75.9
Q ss_pred CCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEE
Q 006384 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALL 311 (647)
Q Consensus 233 P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyi 311 (647)
+.|+.+++++.+++++|||||.... +...+.+++||+.+.+|......|.+|.+|.||++|++ +++|+|
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~----------~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv 91 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEG----------NTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILV 91 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCC----------ccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEE
Confidence 5688899999999999999997654 34678999999999999999999999999999999999 689999
Q ss_pred ecceeccccCccccccccCCcEEEEECCCC
Q 006384 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (647)
Q Consensus 312 fGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (647)
+++... .-.++|.+.++|-
T Consensus 92 ~~~~~~-----------~~~~~w~l~~~t~ 110 (398)
T PLN02772 92 IKKGSA-----------PDDSIWFLEVDTP 110 (398)
T ss_pred EeCCCC-----------CccceEEEEcCCH
Confidence 997654 2367888888763
No 39
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.66 E-value=4.8e-08 Score=73.13 Aligned_cols=48 Identities=42% Similarity=0.752 Sum_probs=41.1
Q ss_pred CcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccC
Q 006384 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (647)
Q Consensus 179 ~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (647)
||++|++++++++||||||+ .......+.+++++||+.+.+|+.++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~-~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGY-GTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCc-ccCCCCcccceeEEEECCCCEEeecCCC
Confidence 69999999999999999999 1122345789999999999999999876
No 40
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.65 E-value=5.2e-08 Score=72.10 Aligned_cols=46 Identities=37% Similarity=0.673 Sum_probs=41.3
Q ss_pred CcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccC
Q 006384 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (647)
Q Consensus 179 ~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (647)
||++|++++++++||||||+... ...++++++||+.+++|+.++++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~---~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGN---NQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBEST---SSBEEEEEEEETTTTEEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeeccc---CceeeeEEEEeCCCCEEEEcCCC
Confidence 69999999999999999999872 34799999999999999999887
No 41
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.61 E-value=5.4e-08 Score=72.76 Aligned_cols=46 Identities=35% Similarity=0.646 Sum_probs=31.2
Q ss_pred CcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccC
Q 006384 179 PRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (647)
Q Consensus 179 ~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (647)
||.+|+++.+ +++||||||..... ..++++|+||+.+++|++++++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~---~~~~d~~~~d~~~~~W~~~~~~ 47 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSG---SPLNDLWIFDIETNTWTRLPSM 47 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-T---EE---EEEEETTTTEEEE--SS
T ss_pred CcceEEEEEEeCCeEEEECCCCCCC---cccCCEEEEECCCCEEEECCCC
Confidence 6999999999 58999999997643 4799999999999999999666
No 42
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.59 E-value=1.1e-07 Score=71.12 Aligned_cols=46 Identities=26% Similarity=0.517 Sum_probs=30.0
Q ss_pred CCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecC
Q 006384 68 PRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISS 118 (647)
Q Consensus 68 ~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s 118 (647)
||.+|+++.+. ++.||||||...++ ..++++|+||+.+++|+++++
T Consensus 1 pR~~h~~~~~~--~~~i~v~GG~~~~~---~~~~d~~~~d~~~~~W~~~~~ 46 (49)
T PF13418_consen 1 PRYGHSAVSIG--DNSIYVFGGRDSSG---SPLNDLWIFDIETNTWTRLPS 46 (49)
T ss_dssp --BS-EEEEE---TTEEEEE--EEE-T---EE---EEEEETTTTEEEE--S
T ss_pred CcceEEEEEEe--CCeEEEECCCCCCC---cccCCEEEEECCCCEEEECCC
Confidence 69999999995 58999999985443 489999999999999999954
No 43
>PLN02772 guanylate kinase
Probab=98.59 E-value=2.2e-07 Score=98.63 Aligned_cols=88 Identities=19% Similarity=0.265 Sum_probs=74.7
Q ss_pred CCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEeccc
Q 006384 177 PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYS 255 (647)
Q Consensus 177 P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~ 255 (647)
+.++..|+++.+++++|||||.++.. ...+.|++||+.+..|...+.. +.+|.||.||+++++ +++|+||++..
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~---~~~~~v~i~D~~t~~W~~P~V~--G~~P~~r~GhSa~v~~~~rilv~~~~~ 96 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGN---TLSIGVQILDKITNNWVSPIVL--GTGPKPCKGYSAVVLNKDRILVIKKGS 96 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCc---cccceEEEEECCCCcEeccccc--CCCCCCCCcceEEEECCceEEEEeCCC
Confidence 56899999999999999999987632 2579999999999999988776 677999999999999 78999999865
Q ss_pred CCCCCcccCCCCCceeeeEEEEeCCCC
Q 006384 256 KEVSTDKNQSEKGIIHSDLWSLDPRTW 282 (647)
Q Consensus 256 ~~~~~~~~~~~~~~~~~dv~~yd~~t~ 282 (647)
.. -.++|.+...|.
T Consensus 97 ~~-------------~~~~w~l~~~t~ 110 (398)
T PLN02772 97 AP-------------DDSIWFLEVDTP 110 (398)
T ss_pred CC-------------ccceEEEEcCCH
Confidence 43 367999987663
No 44
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.56 E-value=2e-07 Score=68.95 Aligned_cols=46 Identities=26% Similarity=0.563 Sum_probs=41.4
Q ss_pred CceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecC
Q 006384 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI 290 (647)
Q Consensus 235 ~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~ 290 (647)
||.+|+++++++.|||+||+... ...++++++||+.+++|+.++++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~----------~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGN----------NQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBEST----------SSBEEEEEEEETTTTEEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeeccc----------CceeeeEEEEeCCCCEEEEcCCC
Confidence 68999999999999999999873 47899999999999999999875
No 45
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.56 E-value=1.7e-07 Score=70.12 Aligned_cols=47 Identities=38% Similarity=0.684 Sum_probs=39.2
Q ss_pred CcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEccc
Q 006384 124 PRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNL 173 (647)
Q Consensus 124 ~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~ 173 (647)
||.+|++++++++||||||...... ....+++++||+.+++|+.+++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~---~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNG---GSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCC---CcccceeEEEECCCCEEeecCC
Confidence 6899999999999999999911111 2367999999999999999987
No 46
>PF13854 Kelch_5: Kelch motif
Probab=98.45 E-value=4.6e-07 Score=65.40 Aligned_cols=42 Identities=38% Similarity=0.566 Sum_probs=35.2
Q ss_pred CCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCC
Q 006384 121 SPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN 166 (647)
Q Consensus 121 ~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~ 166 (647)
.|.+|.+|++++++++||||||..... ...++++|+||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~----~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNN----NSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCC----CCEECcEEEEECCCC
Confidence 378999999999999999999998522 236899999998763
No 47
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.43 E-value=8.2e-06 Score=81.19 Aligned_cols=114 Identities=20% Similarity=0.280 Sum_probs=75.1
Q ss_pred EEEEEeCCcCCCCCccccccCcEEEEECCCCc--------EEEcccCC-CCCCcceeEEEEE----CCEEEEEecccCCC
Q 006384 136 YLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--------WEQLNLKG-CPSPRSGHRMVLY----KHKIIVFGGFYDTL 202 (647)
Q Consensus 136 ~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~--------W~~~~~~~-~P~~R~~h~~~~~----~~~lyv~GG~~~~~ 202 (647)
..+|.||...... ....+|++...+.. +......| .|.+|++|++-++ +...++|||.....
T Consensus 40 ~YlIHGGrTPNNE-----lS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P 114 (337)
T PF03089_consen 40 QYLIHGGRTPNNE-----LSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMP 114 (337)
T ss_pred eEEecCCcCCCcc-----cccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCC
Confidence 4667788766533 46778888765443 22222222 3999999999776 33588999986422
Q ss_pred Cc---e-------eeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCC
Q 006384 203 RE---V-------RYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKE 257 (647)
Q Consensus 203 ~~---~-------~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~ 257 (647)
.. + .....|+.+|++-+..+.-... .+-.+.+.|.+.+-++.+|++||..-.
T Consensus 115 ~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lp---El~dG~SFHvslar~D~VYilGGHsl~ 176 (337)
T PF03089_consen 115 PGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLP---ELQDGQSFHVSLARNDCVYILGGHSLE 176 (337)
T ss_pred ccccchhhcceeccCCCeEEEEeccccccccccch---hhcCCeEEEEEEecCceEEEEccEEcc
Confidence 11 1 1445788889988877654332 224567788888889999999998754
No 48
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.21 E-value=0.00033 Score=70.41 Aligned_cols=204 Identities=15% Similarity=0.229 Sum_probs=115.7
Q ss_pred CcEEEEECCCCeEEEecCCCCCCC-ccee-EEEEEC----C-EEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEccc
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPP-RSAH-QAVSWK----N-YLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNL 173 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~-R~~h-a~v~~~----~-~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~ 173 (647)
..++++||.|.+|+.++.+..|.. ...+ ....++ . +|+.+...... .....+.+|+..+++|+.+..
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~------~~~~~~~Vys~~~~~Wr~~~~ 87 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN------RNQSEHQVYTLGSNSWRTIEC 87 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC------CCCccEEEEEeCCCCcccccc
Confidence 368999999999999986432211 1111 111121 1 34444332111 012468899999999999874
Q ss_pred CCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEE-eccCCCCCCCCCceeeeEEEeCCEEEEEe
Q 006384 174 KGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE-IKPRFGSMWPSPRSGFQFFVYQDEVFLYG 252 (647)
Q Consensus 174 ~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~-v~~~~~~~~P~~R~~~s~~~~~~~Iyv~G 252 (647)
.. +........+.+++.||-+.-..... ....+..||+.+.+|.. ++.... .........++.++++|.++.
T Consensus 88 ~~-~~~~~~~~~v~~~G~lyw~~~~~~~~----~~~~IvsFDl~~E~f~~~i~~P~~--~~~~~~~~~L~~~~G~L~~v~ 160 (230)
T TIGR01640 88 SP-PHHPLKSRGVCINGVLYYLAYTLKTN----PDYFIVSFDVSSERFKEFIPLPCG--NSDSVDYLSLINYKGKLAVLK 160 (230)
T ss_pred CC-CCccccCCeEEECCEEEEEEEECCCC----CcEEEEEEEcccceEeeeeecCcc--ccccccceEEEEECCEEEEEE
Confidence 22 22122223778899999887532211 11269999999999995 543210 001122345666789988876
Q ss_pred cccCCCCCcccCCCCCceeeeEEEEe-CCCCeEEEeecCCCCCCCcee----eEEEEECCeEEEecceeccccCcccccc
Q 006384 253 GYSKEVSTDKNQSEKGIIHSDLWSLD-PRTWEWSKVKKIGMPPGPRAG----FSMCVHKKRALLFGGVVDMEMKGDVIMS 327 (647)
Q Consensus 253 G~~~~~~~~~~~~~~~~~~~dv~~yd-~~t~~W~~v~~~g~~P~~R~~----~s~~~~~~~iyifGG~~~~~~~~~~~~~ 327 (647)
..... ..-+||+++ -....|+++-....++.+... ...+..++.|++......
T Consensus 161 ~~~~~------------~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~---------- 218 (230)
T TIGR01640 161 QKKDT------------NNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDEN---------- 218 (230)
T ss_pred ecCCC------------CcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCC----------
Confidence 54321 114699986 445679987554322222221 234455788887664210
Q ss_pred ccCCcEEEEECCCC
Q 006384 328 LFLNELYGFQLDNH 341 (647)
Q Consensus 328 ~~~ndl~~yd~~t~ 341 (647)
..-+..||+.++
T Consensus 219 --~~~~~~y~~~~~ 230 (230)
T TIGR01640 219 --PFYIFYYNVGEN 230 (230)
T ss_pred --ceEEEEEeccCC
Confidence 113888998764
No 49
>smart00612 Kelch Kelch domain.
Probab=98.17 E-value=2.6e-06 Score=62.44 Aligned_cols=47 Identities=32% Similarity=0.579 Sum_probs=39.7
Q ss_pred EEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECC
Q 006384 136 YLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKH 190 (647)
Q Consensus 136 ~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~ 190 (647)
+|||+||.... ..++++++||+.+++|+.+++ +|.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~------~~~~~v~~yd~~~~~W~~~~~--~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG------QRLKSVEVYDPETNKWTPLPS--MPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC------ceeeeEEEECCCCCeEccCCC--CCCccccceEEEeCC
Confidence 48999997542 246899999999999999987 899999999988764
No 50
>smart00612 Kelch Kelch domain.
Probab=98.15 E-value=3.3e-06 Score=61.89 Aligned_cols=47 Identities=23% Similarity=0.564 Sum_probs=39.5
Q ss_pred EEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECC
Q 006384 247 EVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKK 307 (647)
Q Consensus 247 ~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~ 307 (647)
+|||+||.... ..++++++||+.+++|+.++++ |.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~-----------~~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG-----------QRLKSVEVYDPETNKWTPLPSM---PTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC-----------ceeeeEEEECCCCCeEccCCCC---CCccccceEEEeCC
Confidence 48999998643 4678999999999999998765 88999999988764
No 51
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.97 E-value=0.00039 Score=69.90 Aligned_cols=151 Identities=12% Similarity=0.133 Sum_probs=91.7
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCC----CcEEEcccCCCC
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT----NQWEQLNLKGCP 177 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t----~~W~~~~~~~~P 177 (647)
.-..||+.+++++.+....- .=.++|+ +.-++.++++||.... .+.+-.|++.+ ..|...... |.
T Consensus 47 ~s~~yD~~tn~~rpl~v~td-~FCSgg~-~L~dG~ll~tGG~~~G--------~~~ir~~~p~~~~~~~~w~e~~~~-m~ 115 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTD-TFCSGGA-FLPDGRLLQTGGDNDG--------NKAIRIFTPCTSDGTCDWTESPND-MQ 115 (243)
T ss_pred EEEEEecCCCcEEeccCCCC-CcccCcC-CCCCCCEEEeCCCCcc--------ccceEEEecCCCCCCCCceECccc-cc
Confidence 34579999999998764321 1122222 2237899999998653 24566787765 579887653 78
Q ss_pred CCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCC--C---ceEEeccCCCCCCCCCceeeeEEEeCCEEEEE
Q 006384 178 SPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ--F---KWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLY 251 (647)
Q Consensus 178 ~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t--~---~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~ 251 (647)
.+|-+.+++.+ +++++|+||... ...+.|.... . .|..+.... ...+...+=+..+.-+++||++
T Consensus 116 ~~RWYpT~~~L~DG~vlIvGG~~~--------~t~E~~P~~~~~~~~~~~~~l~~~~-~~~~~nlYP~~~llPdG~lFi~ 186 (243)
T PF07250_consen 116 SGRWYPTATTLPDGRVLIVGGSNN--------PTYEFWPPKGPGPGPVTLPFLSQTS-DTLPNNLYPFVHLLPDGNLFIF 186 (243)
T ss_pred CCCccccceECCCCCEEEEeCcCC--------CcccccCCccCCCCceeeecchhhh-ccCccccCceEEEcCCCCEEEE
Confidence 89999888776 889999999752 1222232211 1 122221110 0113333333344449999999
Q ss_pred ecccCCCCCcccCCCCCceeeeEEEEeCCCCeE-EEeecC
Q 006384 252 GGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW-SKVKKI 290 (647)
Q Consensus 252 GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W-~~v~~~ 290 (647)
+... ..+||+.++++ ..++.+
T Consensus 187 an~~------------------s~i~d~~~n~v~~~lP~l 208 (243)
T PF07250_consen 187 ANRG------------------SIIYDYKTNTVVRTLPDL 208 (243)
T ss_pred EcCC------------------cEEEeCCCCeEEeeCCCC
Confidence 9864 45889999977 455543
No 52
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.77 E-value=0.00072 Score=68.02 Aligned_cols=149 Identities=15% Similarity=0.153 Sum_probs=94.1
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCC----CceEEeccCCCCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ----FKWQEIKPRFGSM 231 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t----~~W~~v~~~~~~~ 231 (647)
..-..||+.+++++.+.... -.-.++| +..-+++++++||..+. ...+-.|++.+ ..|......
T Consensus 46 a~s~~yD~~tn~~rpl~v~t-d~FCSgg-~~L~dG~ll~tGG~~~G------~~~ir~~~p~~~~~~~~w~e~~~~---- 113 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTVQT-DTFCSGG-AFLPDGRLLQTGGDNDG------NKAIRIFTPCTSDGTCDWTESPND---- 113 (243)
T ss_pred EEEEEEecCCCcEEeccCCC-CCcccCc-CCCCCCCEEEeCCCCcc------ccceEEEecCCCCCCCCceECccc----
Confidence 44567999999999887521 1122222 23348899999998653 34566677754 568877542
Q ss_pred CCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCC------CCeEEEeecCC-CCCCCceeeEEE
Q 006384 232 WPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR------TWEWSKVKKIG-MPPGPRAGFSMC 303 (647)
Q Consensus 232 ~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~------t~~W~~v~~~g-~~P~~R~~~s~~ 303 (647)
+-.+|...++..+ +++++|+||.... .+.|-|. ...|..+.... ..|...+-+...
T Consensus 114 m~~~RWYpT~~~L~DG~vlIvGG~~~~----------------t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~l 177 (243)
T PF07250_consen 114 MQSGRWYPTATTLPDGRVLIVGGSNNP----------------TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHL 177 (243)
T ss_pred ccCCCccccceECCCCCEEEEeCcCCC----------------cccccCCccCCCCceeeecchhhhccCccccCceEEE
Confidence 3678999999888 8999999998633 1222222 12222222110 123333344555
Q ss_pred EECCeEEEecceeccccCccccccccCCcEEEEECCCCcE-EEeEe
Q 006384 304 VHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW-YPLEL 348 (647)
Q Consensus 304 ~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W-~~l~~ 348 (647)
.-+++||+|+.. .-.+||..++++ +.++.
T Consensus 178 lPdG~lFi~an~----------------~s~i~d~~~n~v~~~lP~ 207 (243)
T PF07250_consen 178 LPDGNLFIFANR----------------GSIIYDYKTNTVVRTLPD 207 (243)
T ss_pred cCCCCEEEEEcC----------------CcEEEeCCCCeEEeeCCC
Confidence 559999999974 367889999976 56665
No 53
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.25 E-value=0.064 Score=58.48 Aligned_cols=193 Identities=12% Similarity=0.068 Sum_probs=106.8
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCC--eEEEecCCC------CCCCcceeEEEEECCEEEEEeCCcCCCCCccc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPN------SPPPRSAHQAVSWKNYLYIFGGEFTSPNQERF 152 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~--~W~~l~s~~------~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~ 152 (647)
++.||+.+.. ..+++||..+. .|+.-.... .+.++...+.++.++.||+.+.
T Consensus 69 ~~~vy~~~~~----------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~---------- 128 (394)
T PRK11138 69 YNKVYAADRA----------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE---------- 128 (394)
T ss_pred CCEEEEECCC----------CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC----------
Confidence 7899987652 36899998765 587432210 0011222334566888887432
Q ss_pred cccCcEEEEECCCC--cEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc--eEEeccCC
Q 006384 153 HHYKDFWMLDLKTN--QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRF 228 (647)
Q Consensus 153 ~~~~dv~~yD~~t~--~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~ 228 (647)
...++.||..++ .|+.-.. .+ ...+-++.++.+|+..+ ...++.||+.+.+ |+.-...+
T Consensus 129 --~g~l~ald~~tG~~~W~~~~~----~~-~~ssP~v~~~~v~v~~~----------~g~l~ald~~tG~~~W~~~~~~~ 191 (394)
T PRK11138 129 --KGQVYALNAEDGEVAWQTKVA----GE-ALSRPVVSDGLVLVHTS----------NGMLQALNESDGAVKWTVNLDVP 191 (394)
T ss_pred --CCEEEEEECCCCCCcccccCC----Cc-eecCCEEECCEEEEECC----------CCEEEEEEccCCCEeeeecCCCC
Confidence 146899999876 5865432 11 12223556788887433 2468999998765 87643321
Q ss_pred CCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCC--eEEEeecC--CCCCCCc---eeeE
Q 006384 229 GSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKI--GMPPGPR---AGFS 301 (647)
Q Consensus 229 ~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~v~~~--g~~P~~R---~~~s 301 (647)
. ...+...+-++.++.+|+..+ .+ .++.+|+.+. .|+..... +.....| ...+
T Consensus 192 ~---~~~~~~~sP~v~~~~v~~~~~-~g----------------~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~s 251 (394)
T PRK11138 192 S---LTLRGESAPATAFGGAIVGGD-NG----------------RVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTT 251 (394)
T ss_pred c---ccccCCCCCEEECCEEEEEcC-CC----------------EEEEEEccCChhhheeccccCCCccchhcccccCCC
Confidence 0 111222233445666666432 22 2677777654 57653211 0000001 1234
Q ss_pred EEEECCeEEEecceeccccCccccccccCCcEEEEECCCC--cEEE
Q 006384 302 MCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH--RWYP 345 (647)
Q Consensus 302 ~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~--~W~~ 345 (647)
.++.++.+|+.+. ...++.+|+.+. .|+.
T Consensus 252 P~v~~~~vy~~~~---------------~g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 252 PVVVGGVVYALAY---------------NGNLVALDLRSGQIVWKR 282 (394)
T ss_pred cEEECCEEEEEEc---------------CCeEEEEECCCCCEEEee
Confidence 4566888887653 135899999876 4764
No 54
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.24 E-value=0.12 Score=56.25 Aligned_cols=170 Identities=15% Similarity=0.128 Sum_probs=95.0
Q ss_pred cEEEEECCCCe--EEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCC--cEEEcccCCCC
Q 006384 102 DLYRYDVEKQE--WKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--QWEQLNLKGCP 177 (647)
Q Consensus 102 dl~~yd~~~~~--W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~--~W~~~~~~~~P 177 (647)
.++.||+.+.+ |+.-........+...+-++.++.+|+..+. ..++.+|+.++ .|+.-.. .|
T Consensus 171 ~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~------------g~v~a~d~~~G~~~W~~~~~--~~ 236 (394)
T PRK11138 171 MLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDN------------GRVSAVLMEQGQLIWQQRIS--QP 236 (394)
T ss_pred EEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCC------------CEEEEEEccCChhhheeccc--cC
Confidence 58888988764 7754321101112222334446666664331 35778888876 4764321 11
Q ss_pred CC-----c---ceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc--eEEeccCCCCCCCCCceeeeEEEeCCE
Q 006384 178 SP-----R---SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDE 247 (647)
Q Consensus 178 ~~-----R---~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~R~~~s~~~~~~~ 247 (647)
.. | ...+-++.++.+|+.+. -..++.+|+.+.+ |+.-... + ...++.++.
T Consensus 237 ~~~~~~~~~~~~~~sP~v~~~~vy~~~~----------~g~l~ald~~tG~~~W~~~~~~-------~---~~~~~~~~~ 296 (394)
T PRK11138 237 TGATEIDRLVDVDTTPVVVGGVVYALAY----------NGNLVALDLRSGQIVWKREYGS-------V---NDFAVDGGR 296 (394)
T ss_pred CCccchhcccccCCCcEEECCEEEEEEc----------CCeEEEEECCCCCEEEeecCCC-------c---cCcEEECCE
Confidence 11 1 11234566888887653 1468899998764 8753111 1 124566889
Q ss_pred EEEEecccCCCCCcccCCCCCceeeeEEEEeCCCC--eEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCcccc
Q 006384 248 VFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVI 325 (647)
Q Consensus 248 Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~ 325 (647)
||+.... ..++++|+.+. .|+.-.. ..+...+.++.+++||+...
T Consensus 297 vy~~~~~-----------------g~l~ald~~tG~~~W~~~~~-----~~~~~~sp~v~~g~l~v~~~----------- 343 (394)
T PRK11138 297 IYLVDQN-----------------DRVYALDTRGGVELWSQSDL-----LHRLLTAPVLYNGYLVVGDS----------- 343 (394)
T ss_pred EEEEcCC-----------------CeEEEEECCCCcEEEccccc-----CCCcccCCEEECCEEEEEeC-----------
Confidence 9986532 23888988654 5864321 12233345667888887532
Q ss_pred ccccCCcEEEEECCCCc
Q 006384 326 MSLFLNELYGFQLDNHR 342 (647)
Q Consensus 326 ~~~~~ndl~~yd~~t~~ 342 (647)
-..|+++|+.+.+
T Consensus 344 ----~G~l~~ld~~tG~ 356 (394)
T PRK11138 344 ----EGYLHWINREDGR 356 (394)
T ss_pred ----CCEEEEEECCCCC
Confidence 1348888887754
No 55
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=96.98 E-value=0.066 Score=53.68 Aligned_cols=160 Identities=14% Similarity=0.136 Sum_probs=93.1
Q ss_pred CcEEEEECCCCcEEEcccCCCCCC-ccee-EEEEEC----C-EEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSP-RSGH-RMVLYK----H-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~-R~~h-~~~~~~----~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (647)
..++++||.|++|..++....+.. ...+ ....++ . +++.+...... .....+++|++.++.|+.+...+
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~----~~~~~~~Vys~~~~~Wr~~~~~~ 89 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN----RNQSEHQVYTLGSNSWRTIECSP 89 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC----CCCccEEEEEeCCCCccccccCC
Confidence 468899999999999976322101 1111 111221 1 45555432110 12357899999999999987432
Q ss_pred CCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEE-eecCCCCCCCc----eeeEEE
Q 006384 229 GSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK-VKKIGMPPGPR----AGFSMC 303 (647)
Q Consensus 229 ~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~-v~~~g~~P~~R----~~~s~~ 303 (647)
+........+.+++.||-+.-.... .....|..||+.+.+|.. ++. |..+ ....++
T Consensus 90 ----~~~~~~~~~v~~~G~lyw~~~~~~~-----------~~~~~IvsFDl~~E~f~~~i~~----P~~~~~~~~~~~L~ 150 (230)
T TIGR01640 90 ----PHHPLKSRGVCINGVLYYLAYTLKT-----------NPDYFIVSFDVSSERFKEFIPL----PCGNSDSVDYLSLI 150 (230)
T ss_pred ----CCccccCCeEEECCEEEEEEEECCC-----------CCcEEEEEEEcccceEeeeeec----CccccccccceEEE
Confidence 1111122256679999988743221 111258999999999995 543 3222 234566
Q ss_pred EECCeEEEecceeccccCccccccccCCcEEEEE-CCCCcEEEeEe
Q 006384 304 VHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQ-LDNHRWYPLEL 348 (647)
Q Consensus 304 ~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd-~~t~~W~~l~~ 348 (647)
.++++|.++...... ..-+||+++ -....|+++-.
T Consensus 151 ~~~G~L~~v~~~~~~----------~~~~IWvl~d~~~~~W~k~~~ 186 (230)
T TIGR01640 151 NYKGKLAVLKQKKDT----------NNFDLWVLNDAGKQEWSKLFT 186 (230)
T ss_pred EECCEEEEEEecCCC----------CcEEEEEECCCCCCceeEEEE
Confidence 678888887653210 014688886 44567997554
No 56
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.85 E-value=0.58 Score=46.50 Aligned_cols=187 Identities=19% Similarity=0.243 Sum_probs=107.1
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCe--EEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDF 158 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~--W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv 158 (647)
++.||+..+ ...+++||+.+.+ |+.-.. . +.....+..++.||+..+. +.+
T Consensus 36 ~~~v~~~~~----------~~~l~~~d~~tG~~~W~~~~~----~-~~~~~~~~~~~~v~v~~~~------------~~l 88 (238)
T PF13360_consen 36 GGRVYVASG----------DGNLYALDAKTGKVLWRFDLP----G-PISGAPVVDGGRVYVGTSD------------GSL 88 (238)
T ss_dssp TTEEEEEET----------TSEEEEEETTTSEEEEEEECS----S-CGGSGEEEETTEEEEEETT------------SEE
T ss_pred CCEEEEEcC----------CCEEEEEECCCCCEEEEeecc----c-cccceeeecccccccccce------------eee
Confidence 788888844 2489999998774 765432 1 1122246778999888631 468
Q ss_pred EEEECCCC--cEEE-cccCCCCC-CcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc--eEEeccCCCCCC
Q 006384 159 WMLDLKTN--QWEQ-LNLKGCPS-PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMW 232 (647)
Q Consensus 159 ~~yD~~t~--~W~~-~~~~~~P~-~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~ 232 (647)
+.||..++ .|+. .... .+. .+.....++.++.+|+... ...++.+|+.+++ |..-...+....
T Consensus 89 ~~~d~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------~g~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 89 YALDAKTGKVLWSIYLTSS-PPAGVRSSSSPAVDGDRLYVGTS----------SGKLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEETTTSCEEEEEEE-SS-CTCSTB--SEEEEETTEEEEEET----------CSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred EecccCCcceeeeeccccc-cccccccccCceEecCEEEEEec----------cCcEEEEecCCCcEEEEeecCCCCCCc
Confidence 99998877 5883 4331 122 2334445555777777653 2568999998765 776543311000
Q ss_pred CC---CceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCe--EEEeecCCCCCCCceeeEEEEECC
Q 006384 233 PS---PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE--WSKVKKIGMPPGPRAGFSMCVHKK 307 (647)
Q Consensus 233 P~---~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~--W~~v~~~g~~P~~R~~~s~~~~~~ 307 (647)
+. .......++.++.||+..+... +..+|..+.. |+.. .. . ........++
T Consensus 158 ~~~~~~~~~~~~~~~~~~v~~~~~~g~-----------------~~~~d~~tg~~~w~~~-~~-----~-~~~~~~~~~~ 213 (238)
T PF13360_consen 158 PISSFSDINGSPVISDGRVYVSSGDGR-----------------VVAVDLATGEKLWSKP-IS-----G-IYSLPSVDGG 213 (238)
T ss_dssp -EEEETTEEEEEECCTTEEEEECCTSS-----------------EEEEETTTTEEEEEEC-SS-------ECECEECCCT
T ss_pred ceeeecccccceEEECCEEEEEcCCCe-----------------EEEEECCCCCEEEEec-CC-----C-ccCCceeeCC
Confidence 00 1112333344678888765421 5566888876 8433 21 1 1111344466
Q ss_pred eEEEecceeccccCccccccccCCcEEEEECCCCc--EE
Q 006384 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR--WY 344 (647)
Q Consensus 308 ~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~--W~ 344 (647)
.||+.. . ...|+++|+.+++ |.
T Consensus 214 ~l~~~~-~--------------~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 214 TLYVTS-S--------------DGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EEEEEE-T--------------TTEEEEEETTTTEEEEE
T ss_pred EEEEEe-C--------------CCEEEEEECCCCCEEeE
Confidence 676665 2 2569999999874 65
No 57
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.75 E-value=0.75 Score=49.64 Aligned_cols=169 Identities=17% Similarity=0.119 Sum_probs=89.7
Q ss_pred cEEEEECCCC--eEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCC--cEEEcccCCCC
Q 006384 102 DLYRYDVEKQ--EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--QWEQLNLKGCP 177 (647)
Q Consensus 102 dl~~yd~~~~--~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~--~W~~~~~~~~P 177 (647)
.++.+|+.+. .|+.-........+...+.++.++.+| +|.. -..++.+|+.++ .|+.-.. .|
T Consensus 156 ~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~-~~~~-----------~g~v~ald~~tG~~~W~~~~~--~~ 221 (377)
T TIGR03300 156 RLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVL-VGFA-----------GGKLVALDLQTGQPLWEQRVA--LP 221 (377)
T ss_pred eEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEE-EECC-----------CCEEEEEEccCCCEeeeeccc--cC
Confidence 5888898765 476433211001122233345566554 4332 135888998876 4764321 11
Q ss_pred CCc--------ceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc--eEEeccCCCCCCCCCceeeeEEEeCCE
Q 006384 178 SPR--------SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDE 247 (647)
Q Consensus 178 ~~R--------~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~R~~~s~~~~~~~ 247 (647)
..+ .....++.++.||+... ...++.||+.+.+ |..-. + ...+.++.++.
T Consensus 222 ~g~~~~~~~~~~~~~p~~~~~~vy~~~~----------~g~l~a~d~~tG~~~W~~~~-------~---~~~~p~~~~~~ 281 (377)
T TIGR03300 222 KGRTELERLVDVDGDPVVDGGQVYAVSY----------QGRVAALDLRSGRVLWKRDA-------S---SYQGPAVDDNR 281 (377)
T ss_pred CCCCchhhhhccCCccEEECCEEEEEEc----------CCEEEEEECCCCcEEEeecc-------C---CccCceEeCCE
Confidence 111 12233456778887543 2458899988754 76531 1 11233456888
Q ss_pred EEEEecccCCCCCcccCCCCCceeeeEEEEeCCCC--eEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCcccc
Q 006384 248 VFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVI 325 (647)
Q Consensus 248 Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~ 325 (647)
||+... ++ .++++|+.+. .|+.... ..+...+.++.++.||+.. .
T Consensus 282 vyv~~~-~G----------------~l~~~d~~tG~~~W~~~~~-----~~~~~ssp~i~g~~l~~~~-~---------- 328 (377)
T TIGR03300 282 LYVTDA-DG----------------VVVALDRRSGSELWKNDEL-----KYRQLTAPAVVGGYLVVGD-F---------- 328 (377)
T ss_pred EEEECC-CC----------------eEEEEECCCCcEEEccccc-----cCCccccCEEECCEEEEEe-C----------
Confidence 887642 22 3788887654 6765321 1122233455677777643 2
Q ss_pred ccccCCcEEEEECCCC
Q 006384 326 MSLFLNELYGFQLDNH 341 (647)
Q Consensus 326 ~~~~~ndl~~yd~~t~ 341 (647)
...|+++|+.+.
T Consensus 329 ----~G~l~~~d~~tG 340 (377)
T TIGR03300 329 ----EGYLHWLSREDG 340 (377)
T ss_pred ----CCEEEEEECCCC
Confidence 235888887665
No 58
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.72 E-value=0.72 Score=46.53 Aligned_cols=200 Identities=17% Similarity=0.090 Sum_probs=106.4
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDF 158 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv 158 (647)
++.||+..- ..+.++++++.+..-..+..+ . ..+++.. ++.||+... ..+
T Consensus 11 ~g~l~~~D~---------~~~~i~~~~~~~~~~~~~~~~---~---~~G~~~~~~~g~l~v~~~-------------~~~ 62 (246)
T PF08450_consen 11 DGRLYWVDI---------PGGRIYRVDPDTGEVEVIDLP---G---PNGMAFDRPDGRLYVADS-------------GGI 62 (246)
T ss_dssp TTEEEEEET---------TTTEEEEEETTTTEEEEEESS---S---EEEEEEECTTSEEEEEET-------------TCE
T ss_pred CCEEEEEEc---------CCCEEEEEECCCCeEEEEecC---C---CceEEEEccCCEEEEEEc-------------Cce
Confidence 477777643 124899999999987765542 2 3334444 688888764 335
Q ss_pred EEEECCCCcEEEcccC--CC-CCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCC
Q 006384 159 WMLDLKTNQWEQLNLK--GC-PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSP 235 (647)
Q Consensus 159 ~~yD~~t~~W~~~~~~--~~-P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~ 235 (647)
.++|+.+++++.+... +. +..+.+-.++--++.||+---...... ......++++++. .+.+.+... ..
T Consensus 63 ~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~-~~~~g~v~~~~~~-~~~~~~~~~------~~ 134 (246)
T PF08450_consen 63 AVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGAS-GIDPGSVYRIDPD-GKVTVVADG------LG 134 (246)
T ss_dssp EEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTT-CGGSEEEEEEETT-SEEEEEEEE------ES
T ss_pred EEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccc-cccccceEEECCC-CeEEEEecC------cc
Confidence 6679999999888663 11 333444444444778887532211110 0001569999998 665555332 11
Q ss_pred ceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCC--CCeEEEeecCCCCCCC-ceeeEEEEE-CCeE
Q 006384 236 RSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR--TWEWSKVKKIGMPPGP-RAGFSMCVH-KKRA 309 (647)
Q Consensus 236 R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~--t~~W~~v~~~g~~P~~-R~~~s~~~~-~~~i 309 (647)
.-.+++.. +..||+.--.. ..||+|++. ...+.........+.. ...-++++- ++.|
T Consensus 135 -~pNGi~~s~dg~~lyv~ds~~----------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l 197 (246)
T PF08450_consen 135 -FPNGIAFSPDGKTLYVADSFN----------------GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNL 197 (246)
T ss_dssp -SEEEEEEETTSSEEEEEETTT----------------TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-E
T ss_pred -cccceEECCcchheeeccccc----------------ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCE
Confidence 11234444 44677743322 338888875 3334432211111222 123345554 6788
Q ss_pred EEecceeccccCccccccccCCcEEEEECCCCcEEEeE
Q 006384 310 LLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (647)
Q Consensus 310 yifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (647)
|+..-. .+.|++||+....-..+.
T Consensus 198 ~va~~~--------------~~~I~~~~p~G~~~~~i~ 221 (246)
T PF08450_consen 198 WVADWG--------------GGRIVVFDPDGKLLREIE 221 (246)
T ss_dssp EEEEET--------------TTEEEEEETTSCEEEEEE
T ss_pred EEEEcC--------------CCEEEEECCCccEEEEEc
Confidence 886321 246899998744333333
No 59
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.44 E-value=0.91 Score=48.96 Aligned_cols=188 Identities=14% Similarity=0.119 Sum_probs=100.4
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCC--eEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDF 158 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~--~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv 158 (647)
++.||+.+.. ..+++||+.+. .|+.-... +...+.++.++.+|+.+. -..+
T Consensus 65 ~~~v~v~~~~----------g~v~a~d~~tG~~~W~~~~~~-----~~~~~p~v~~~~v~v~~~------------~g~l 117 (377)
T TIGR03300 65 GGKVYAADAD----------GTVVALDAETGKRLWRVDLDE-----RLSGGVGADGGLVFVGTE------------KGEV 117 (377)
T ss_pred CCEEEEECCC----------CeEEEEEccCCcEeeeecCCC-----CcccceEEcCCEEEEEcC------------CCEE
Confidence 6777776541 36899998765 48743221 111223444677776432 1468
Q ss_pred EEEECCCCc--EEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc--eEEeccCCCCCCCC
Q 006384 159 WMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPS 234 (647)
Q Consensus 159 ~~yD~~t~~--W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~ 234 (647)
+.||+.+++ |+.... .. .....++.++.+|+..+ ...++.||+.+.+ |+.-...+. ..
T Consensus 118 ~ald~~tG~~~W~~~~~----~~-~~~~p~v~~~~v~v~~~----------~g~l~a~d~~tG~~~W~~~~~~~~---~~ 179 (377)
T TIGR03300 118 IALDAEDGKELWRAKLS----SE-VLSPPLVANGLVVVRTN----------DGRLTALDAATGERLWTYSRVTPA---LT 179 (377)
T ss_pred EEEECCCCcEeeeeccC----ce-eecCCEEECCEEEEECC----------CCeEEEEEcCCCceeeEEccCCCc---ee
Confidence 999987764 865432 11 12233456777777533 2458999988654 775433210 01
Q ss_pred CceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCC--eEEEeecCC--CCCCCc---eeeEEEEECC
Q 006384 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIG--MPPGPR---AGFSMCVHKK 307 (647)
Q Consensus 235 ~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~v~~~g--~~P~~R---~~~s~~~~~~ 307 (647)
.+...+.++.++.+| +|...+ .++.+|+.+. .|+.-...+ .....| ...+.++.++
T Consensus 180 ~~~~~sp~~~~~~v~-~~~~~g----------------~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~ 242 (377)
T TIGR03300 180 LRGSASPVIADGGVL-VGFAGG----------------KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGG 242 (377)
T ss_pred ecCCCCCEEECCEEE-EECCCC----------------EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECC
Confidence 122233445566544 444322 3788887654 676532110 000011 1223445677
Q ss_pred eEEEecceeccccCccccccccCCcEEEEECCCC--cEEE
Q 006384 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH--RWYP 345 (647)
Q Consensus 308 ~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~--~W~~ 345 (647)
.+|+... ...++.||+.+. .|..
T Consensus 243 ~vy~~~~---------------~g~l~a~d~~tG~~~W~~ 267 (377)
T TIGR03300 243 QVYAVSY---------------QGRVAALDLRSGRVLWKR 267 (377)
T ss_pred EEEEEEc---------------CCEEEEEECCCCcEEEee
Confidence 7777542 235899998776 3654
No 60
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.38 E-value=0.19 Score=53.84 Aligned_cols=195 Identities=19% Similarity=0.205 Sum_probs=111.5
Q ss_pred CCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEE--ECCE-EE
Q 006384 62 NVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVS--WKNY-LY 138 (647)
Q Consensus 62 ~~~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~--~~~~-iy 138 (647)
+...|+-+.--++-++| .-.|++++|. ++. -.+|..|-.+|. .+.++. ..++--..+. -+|. ..
T Consensus 207 Na~~ps~~~I~sv~FHp--~~plllvaG~--d~~-----lrifqvDGk~N~--~lqS~~--l~~fPi~~a~f~p~G~~~i 273 (514)
T KOG2055|consen 207 NAAHPSHGGITSVQFHP--TAPLLLVAGL--DGT-----LRIFQVDGKVNP--KLQSIH--LEKFPIQKAEFAPNGHSVI 273 (514)
T ss_pred ccCCcCcCCceEEEecC--CCceEEEecC--CCc-----EEEEEecCccCh--hheeee--eccCccceeeecCCCceEE
Confidence 34567777777788888 6789999994 332 245666666664 444432 1111111111 2444 77
Q ss_pred EEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEE-EEECCEEEEEecccCCCCceeeeCcEEEEEcC
Q 006384 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRM-VLYKHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (647)
Q Consensus 139 v~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~-~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~ 217 (647)
+++|. -.-+|.||+.+.+-.++.+......++-+.. +...+.++++-|.. .-++++...
T Consensus 274 ~~s~r-----------rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~---------G~I~lLhak 333 (514)
T KOG2055|consen 274 FTSGR-----------RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN---------GHIHLLHAK 333 (514)
T ss_pred Eeccc-----------ceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC---------ceEEeehhh
Confidence 77774 2458999999999888876432223333333 34455667776753 346777777
Q ss_pred CCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCc
Q 006384 218 QFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPR 297 (647)
Q Consensus 218 t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R 297 (647)
|+.|.---.+ +-....+++...+..||+.||++ . ||++|+..+.-...-.- -..-
T Consensus 334 T~eli~s~Ki-----eG~v~~~~fsSdsk~l~~~~~~G-e----------------V~v~nl~~~~~~~rf~D---~G~v 388 (514)
T KOG2055|consen 334 TKELITSFKI-----EGVVSDFTFSSDSKELLASGGTG-E----------------VYVWNLRQNSCLHRFVD---DGSV 388 (514)
T ss_pred hhhhhheeee-----ccEEeeEEEecCCcEEEEEcCCc-e----------------EEEEecCCcceEEEEee---cCcc
Confidence 8777533222 33344555555577888888874 3 89999987733222110 1122
Q ss_pred eeeEEEE-ECCeEEEecc
Q 006384 298 AGFSMCV-HKKRALLFGG 314 (647)
Q Consensus 298 ~~~s~~~-~~~~iyifGG 314 (647)
.+.+.|. .++..+..|-
T Consensus 389 ~gts~~~S~ng~ylA~GS 406 (514)
T KOG2055|consen 389 HGTSLCISLNGSYLATGS 406 (514)
T ss_pred ceeeeeecCCCceEEecc
Confidence 3444443 4566555553
No 61
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.32 E-value=1.3 Score=43.98 Aligned_cols=176 Identities=22% Similarity=0.257 Sum_probs=100.4
Q ss_pred cEEEEECCCC--eEEEecCCCCCCCcceeE--EEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCc--EEEcccCC
Q 006384 102 DLYRYDVEKQ--EWKVISSPNSPPPRSAHQ--AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKG 175 (647)
Q Consensus 102 dl~~yd~~~~--~W~~l~s~~~P~~R~~ha--~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~--W~~~~~~~ 175 (647)
.|.++|+.+. .|+.-.. ....+.. .+..++.+|+..+ ...+++||+.+++ |+.-..
T Consensus 4 ~l~~~d~~tG~~~W~~~~~----~~~~~~~~~~~~~~~~v~~~~~------------~~~l~~~d~~tG~~~W~~~~~-- 65 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLG----PGIGGPVATAVPDGGRVYVASG------------DGNLYALDAKTGKVLWRFDLP-- 65 (238)
T ss_dssp EEEEEETTTTEEEEEEECS----SSCSSEEETEEEETTEEEEEET------------TSEEEEEETTTSEEEEEEECS--
T ss_pred EEEEEECCCCCEEEEEECC----CCCCCccceEEEeCCEEEEEcC------------CCEEEEEECCCCCEEEEeecc--
Confidence 5778888665 4775321 1122222 3446899999843 2679999998875 655432
Q ss_pred CCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc--eE-EeccCCCCCCCC-CceeeeEEEeCCEEEEE
Q 006384 176 CPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQ-EIKPRFGSMWPS-PRSGFQFFVYQDEVFLY 251 (647)
Q Consensus 176 ~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~-~v~~~~~~~~P~-~R~~~s~~~~~~~Iyv~ 251 (647)
.+.....+..++.||+..+ -+.++.||+.+.+ |+ .....+ +. .+......+.++.+|+.
T Consensus 66 ---~~~~~~~~~~~~~v~v~~~----------~~~l~~~d~~tG~~~W~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 128 (238)
T PF13360_consen 66 ---GPISGAPVVDGGRVYVGTS----------DGSLYALDAKTGKVLWSIYLTSSP----PAGVRSSSSPAVDGDRLYVG 128 (238)
T ss_dssp ---SCGGSGEEEETTEEEEEET----------TSEEEEEETTTSCEEEEEEE-SSC----TCSTB--SEEEEETTEEEEE
T ss_pred ---ccccceeeecccccccccc----------eeeeEecccCCcceeeeecccccc----ccccccccCceEecCEEEEE
Confidence 1222224777889988763 1368999977654 88 444321 22 23334444557777665
Q ss_pred ecccCCCCCcccCCCCCceeeeEEEEeCCCC--eEEEeecCCCCCCC-------ceeeEEEEECCeEEEecceeccccCc
Q 006384 252 GGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPPGP-------RAGFSMCVHKKRALLFGGVVDMEMKG 322 (647)
Q Consensus 252 GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~v~~~g~~P~~-------R~~~s~~~~~~~iyifGG~~~~~~~~ 322 (647)
.. .+ .++++|+.+. .|...... ++.. ......++.++.+|++.+..
T Consensus 129 ~~-~g----------------~l~~~d~~tG~~~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g------ 183 (238)
T PF13360_consen 129 TS-SG----------------KLVALDPKTGKLLWKYPVGE--PRGSSPISSFSDINGSPVISDGRVYVSSGDG------ 183 (238)
T ss_dssp ET-CS----------------EEEEEETTTTEEEEEEESST--T-SS--EEEETTEEEEEECCTTEEEEECCTS------
T ss_pred ec-cC----------------cEEEEecCCCcEEEEeecCC--CCCCcceeeecccccceEEECCEEEEEcCCC------
Confidence 53 22 3889998765 57765422 1111 11233344467788776531
Q ss_pred cccccccCCcEEEEECCCCc--EEEe
Q 006384 323 DVIMSLFLNELYGFQLDNHR--WYPL 346 (647)
Q Consensus 323 ~~~~~~~~ndl~~yd~~t~~--W~~l 346 (647)
.+..+|+.++. |...
T Consensus 184 ---------~~~~~d~~tg~~~w~~~ 200 (238)
T PF13360_consen 184 ---------RVVAVDLATGEKLWSKP 200 (238)
T ss_dssp ---------SEEEEETTTTEEEEEEC
T ss_pred ---------eEEEEECCCCCEEEEec
Confidence 26777999886 7433
No 62
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.58 E-value=0.69 Score=47.86 Aligned_cols=127 Identities=17% Similarity=0.299 Sum_probs=78.2
Q ss_pred EEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcC
Q 006384 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (647)
Q Consensus 139 v~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~ 217 (647)
++||.+..... -....+..||+.+.+|..+... ..-.-+.+... +++||+.|-+.-... -...+-.||+.
T Consensus 2 ~VGG~F~~aGs---L~C~~lC~yd~~~~qW~~~g~~---i~G~V~~l~~~~~~~Llv~G~ft~~~~---~~~~la~yd~~ 72 (281)
T PF12768_consen 2 YVGGSFTSAGS---LPCPGLCLYDTDNSQWSSPGNG---ISGTVTDLQWASNNQLLVGGNFTLNGT---NSSNLATYDFK 72 (281)
T ss_pred EEeeecCCCCC---cCCCEEEEEECCCCEeecCCCC---ceEEEEEEEEecCCEEEEEEeeEECCC---CceeEEEEecC
Confidence 56776655432 1257899999999999998762 11122334444 778888886654331 24568899999
Q ss_pred CCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeec
Q 006384 218 QFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (647)
Q Consensus 218 t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~ 289 (647)
+.+|+.+.......+|.|.....+... ...+++.|..... ..-+..| ...+|..+..
T Consensus 73 ~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g-------------~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 73 NQTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANG-------------STFLMKY--DGSSWSSIGS 130 (281)
T ss_pred CCeeeecCCcccccCCCcEEEEEeeccCCceEEEeceecCC-------------CceEEEE--cCCceEeccc
Confidence 999999877422334555433333333 4567777765211 2235666 4567888865
No 63
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.19 E-value=0.3 Score=52.33 Aligned_cols=150 Identities=23% Similarity=0.301 Sum_probs=89.2
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCC-CCCcceeEEEEECCE-EEEEecccCCCCceeeeCcE
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLYKHK-IIVFGGFYDTLREVRYYNDL 211 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~-P~~R~~h~~~~~~~~-lyv~GG~~~~~~~~~~~~dv 211 (647)
.-.|.+.+|.+.. -.+|..|-++|. .+...-+ -.|...... .-++. .++++|. ..-+
T Consensus 224 ~~plllvaG~d~~---------lrifqvDGk~N~--~lqS~~l~~fPi~~a~f-~p~G~~~i~~s~r---------rky~ 282 (514)
T KOG2055|consen 224 TAPLLLVAGLDGT---------LRIFQVDGKVNP--KLQSIHLEKFPIQKAEF-APNGHSVIFTSGR---------RKYL 282 (514)
T ss_pred CCceEEEecCCCc---------EEEEEecCccCh--hheeeeeccCccceeee-cCCCceEEEeccc---------ceEE
Confidence 3568888887543 457777777775 3332101 112222111 22444 7777775 3457
Q ss_pred EEEEcCCCceEEeccCCCCCCCCCceeeeE-EEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecC
Q 006384 212 YVFDLDQFKWQEIKPRFGSMWPSPRSGFQF-FVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI 290 (647)
Q Consensus 212 ~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~-~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~ 290 (647)
|.||+.+.+-+++.++-+- + .++-+.+ +...+.++++-|..+. |+.+...++.|..--.+
T Consensus 283 ysyDle~ak~~k~~~~~g~--e-~~~~e~FeVShd~~fia~~G~~G~----------------I~lLhakT~eli~s~Ki 343 (514)
T KOG2055|consen 283 YSYDLETAKVTKLKPPYGV--E-EKSMERFEVSHDSNFIAIAGNNGH----------------IHLLHAKTKELITSFKI 343 (514)
T ss_pred EEeeccccccccccCCCCc--c-cchhheeEecCCCCeEEEcccCce----------------EEeehhhhhhhhheeee
Confidence 9999999999998876321 2 2222223 3346667777777665 77888888777543222
Q ss_pred CCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCC
Q 006384 291 GMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (647)
Q Consensus 291 g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (647)
+..-..++....+..||+.||. ..||+||+..+
T Consensus 344 ---eG~v~~~~fsSdsk~l~~~~~~---------------GeV~v~nl~~~ 376 (514)
T KOG2055|consen 344 ---EGVVSDFTFSSDSKELLASGGT---------------GEVYVWNLRQN 376 (514)
T ss_pred ---ccEEeeEEEecCCcEEEEEcCC---------------ceEEEEecCCc
Confidence 2222333334446678888885 35999999877
No 64
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=95.14 E-value=0.59 Score=49.98 Aligned_cols=127 Identities=16% Similarity=0.180 Sum_probs=75.1
Q ss_pred EEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCC
Q 006384 186 VLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQS 265 (647)
Q Consensus 186 ~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~ 265 (647)
++.+++|+..+.. ..+.+||+.+..-...+.+ +.+.....++.+++.||++...... ......
T Consensus 73 al~gskIv~~d~~----------~~t~vyDt~t~av~~~P~l-----~~pk~~pisv~VG~~LY~m~~~~~~--~~~~~~ 135 (342)
T PF07893_consen 73 ALHGSKIVAVDQS----------GRTLVYDTDTRAVATGPRL-----HSPKRCPISVSVGDKLYAMDRSPFP--EPAGRP 135 (342)
T ss_pred EecCCeEEEEcCC----------CCeEEEECCCCeEeccCCC-----CCCCcceEEEEeCCeEEEeeccCcc--ccccCc
Confidence 3358899988653 3378999999877755554 4444555666668889999887543 000000
Q ss_pred CCCceeeeEEEEe--------CCCCeEEEeecCCCCCCCce-------eeEEEEE-CCeEEE-ecceeccccCccccccc
Q 006384 266 EKGIIHSDLWSLD--------PRTWEWSKVKKIGMPPGPRA-------GFSMCVH-KKRALL-FGGVVDMEMKGDVIMSL 328 (647)
Q Consensus 266 ~~~~~~~dv~~yd--------~~t~~W~~v~~~g~~P~~R~-------~~s~~~~-~~~iyi-fGG~~~~~~~~~~~~~~ 328 (647)
....-++..|+ .....|..+++. |-.+. -.+-+++ +..|+| +-|..
T Consensus 136 --~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~P---Pf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------------ 198 (342)
T PF07893_consen 136 --DFPCFEALVYRPPPDDPSPEESWSWRSLPPP---PFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------------ 198 (342)
T ss_pred --cceeEEEeccccccccccCCCcceEEcCCCC---CccccCCcccceEEEEEEecCCeEEEEecCCc------------
Confidence 00022233333 345678887542 32221 2344555 566776 43321
Q ss_pred cCCcEEEEECCCCcEEEeEe
Q 006384 329 FLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 329 ~~ndl~~yd~~t~~W~~l~~ 348 (647)
.-.|.||+.+.+|+.+..
T Consensus 199 --~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 199 --WGTYSFDTESHEWRKHGD 216 (342)
T ss_pred --eEEEEEEcCCcceeeccc
Confidence 138999999999999854
No 65
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=95.10 E-value=1.8 Score=42.14 Aligned_cols=148 Identities=22% Similarity=0.357 Sum_probs=75.8
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCe--EEEecCCCCC-CCcceeEEEEEC--CEEEEEeCCcCCCCCcccccc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSP-PPRSAHQAVSWK--NYLYIFGGEFTSPNQERFHHY 155 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~--W~~l~s~~~P-~~R~~ha~v~~~--~~iyv~GG~~~~~~~~~~~~~ 155 (647)
.+++|+|-|. .+|+|+..... -+.+... .| .|..-.++.... +++|+|-|
T Consensus 16 ~g~~y~FkG~-----------~~w~~~~~~~~~~p~~I~~~-w~~~p~~IDAa~~~~~~~~~yfFkg------------- 70 (194)
T cd00094 16 RGELYFFKGR-----------YFWRLSPGKPPGSPFLISSF-WPSLPSPVDAAFERPDTGKIYFFKG------------- 70 (194)
T ss_pred CCEEEEEeCC-----------EEEEEeCCCCCCCCeEhhhh-CCCCCCCccEEEEECCCCEEEEECC-------------
Confidence 4889999883 56777765221 1222221 11 222233344443 89999977
Q ss_pred CcEEEEECCCCcEE---EcccCCCCC-CcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCC
Q 006384 156 KDFWMLDLKTNQWE---QLNLKGCPS-PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (647)
Q Consensus 156 ~dv~~yD~~t~~W~---~~~~~~~P~-~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~ 229 (647)
+.+|+|+..+..+. .+...+.|. +..-.++..+ ++++|+|.| +..|+||..+.+...--+...
T Consensus 71 ~~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-----------~~y~ry~~~~~~v~~~yP~~i 139 (194)
T cd00094 71 DKYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-----------DKYWRYDEKTQKMDPGYPKLI 139 (194)
T ss_pred CEEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC-----------CEEEEEeCCCccccCCCCcch
Confidence 46888887642221 111111221 1111233334 579999988 356788876554321101100
Q ss_pred ----CCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCe
Q 006384 230 ----SMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (647)
Q Consensus 230 ----~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (647)
..+|.. ...++...++.+|+|-|. ..|+||..+.+
T Consensus 140 ~~~w~g~p~~-idaa~~~~~~~~yfF~g~------------------~y~~~d~~~~~ 178 (194)
T cd00094 140 ETDFPGVPDK-VDAAFRWLDGYYYFFKGD------------------QYWRFDPRSKE 178 (194)
T ss_pred hhcCCCcCCC-cceeEEeCCCcEEEEECC------------------EEEEEeCccce
Confidence 011222 222222224889999774 37899987665
No 66
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=95.00 E-value=2 Score=41.94 Aligned_cols=154 Identities=16% Similarity=0.259 Sum_probs=76.9
Q ss_pred EEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCc--EEEcccCCCC-CCcceeEEEEEC--CEEEEEecccCCCC
Q 006384 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKGCP-SPRSGHRMVLYK--HKIIVFGGFYDTLR 203 (647)
Q Consensus 129 a~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~--W~~~~~~~~P-~~R~~h~~~~~~--~~lyv~GG~~~~~~ 203 (647)
+++...+.+|+|-| +.+|+|+..... -..+... -| .+..-.++.... +++|+|-|
T Consensus 11 A~~~~~g~~y~FkG-------------~~~w~~~~~~~~~~p~~I~~~-w~~~p~~IDAa~~~~~~~~~yfFkg------ 70 (194)
T cd00094 11 AVTTLRGELYFFKG-------------RYFWRLSPGKPPGSPFLISSF-WPSLPSPVDAAFERPDTGKIYFFKG------ 70 (194)
T ss_pred eEEEeCCEEEEEeC-------------CEEEEEeCCCCCCCCeEhhhh-CCCCCCCccEEEEECCCCEEEEECC------
Confidence 34445699999987 457888765221 1222221 12 122223344443 79999977
Q ss_pred ceeeeCcEEEEEcCCCceEEeccCCC-CCCCC-CceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCC
Q 006384 204 EVRYYNDLYVFDLDQFKWQEIKPRFG-SMWPS-PRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR 280 (647)
Q Consensus 204 ~~~~~~dv~~yD~~t~~W~~v~~~~~-~~~P~-~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~ 280 (647)
+.+|+|+..+..+........ +.++. .....++... ++++|+|-|. ..|+|+..
T Consensus 71 -----~~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~------------------~y~ry~~~ 127 (194)
T cd00094 71 -----DKYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD------------------KYWRYDEK 127 (194)
T ss_pred -----CEEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC------------------EEEEEeCC
Confidence 357778765422211111100 11111 1122222222 6899999884 26788865
Q ss_pred CCeEEEe-----ec-CCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 281 TWEWSKV-----KK-IGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 281 t~~W~~v-----~~-~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
..+...- .. -...|. ..-.+....++++|+|-| +..|+||..+.+
T Consensus 128 ~~~v~~~yP~~i~~~w~g~p~-~idaa~~~~~~~~yfF~g----------------~~y~~~d~~~~~ 178 (194)
T cd00094 128 TQKMDPGYPKLIETDFPGVPD-KVDAAFRWLDGYYYFFKG----------------DQYWRFDPRSKE 178 (194)
T ss_pred CccccCCCCcchhhcCCCcCC-CcceeEEeCCCcEEEEEC----------------CEEEEEeCccce
Confidence 5443210 00 001121 122222223488999988 348999988766
No 67
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=94.94 E-value=0.76 Score=49.15 Aligned_cols=130 Identities=13% Similarity=0.083 Sum_probs=76.0
Q ss_pred EEEE-CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCcee-e
Q 006384 130 AVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVR-Y 207 (647)
Q Consensus 130 ~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~-~ 207 (647)
++++ +++|+..+.. ..+.+||+.+..-...+. ++.+.....++.++++||++........... .
T Consensus 71 F~al~gskIv~~d~~------------~~t~vyDt~t~av~~~P~--l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~ 136 (342)
T PF07893_consen 71 FFALHGSKIVAVDQS------------GRTLVYDTDTRAVATGPR--LHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPD 136 (342)
T ss_pred EEEecCCeEEEEcCC------------CCeEEEECCCCeEeccCC--CCCCCcceEEEEeCCeEEEeeccCccccccCcc
Confidence 3444 8888888653 337799999998776665 5555556677888999999987643211100 0
Q ss_pred eCcEEEE--E--------cCCCceEEeccCCCCCCCCC--ceeeeEEEe-CCEEEE-EecccCCCCCcccCCCCCceeee
Q 006384 208 YNDLYVF--D--------LDQFKWQEIKPRFGSMWPSP--RSGFQFFVY-QDEVFL-YGGYSKEVSTDKNQSEKGIIHSD 273 (647)
Q Consensus 208 ~~dv~~y--D--------~~t~~W~~v~~~~~~~~P~~--R~~~s~~~~-~~~Iyv-~GG~~~~~~~~~~~~~~~~~~~d 273 (647)
...++.+ + ...-.|+.+++.|-...... +.-.+.+++ +..||| .-|.. .-
T Consensus 137 ~~~FE~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~----------------~G 200 (342)
T PF07893_consen 137 FPCFEALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR----------------WG 200 (342)
T ss_pred ceeEEEeccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc----------------eE
Confidence 0033343 3 12335777766421110000 002344444 667777 33321 12
Q ss_pred EEEEeCCCCeEEEeec
Q 006384 274 LWSLDPRTWEWSKVKK 289 (647)
Q Consensus 274 v~~yd~~t~~W~~v~~ 289 (647)
.|.||..+.+|+++..
T Consensus 201 TysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 201 TYSFDTESHEWRKHGD 216 (342)
T ss_pred EEEEEcCCcceeeccc
Confidence 8899999999999843
No 68
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=94.92 E-value=4.5 Score=41.04 Aligned_cols=101 Identities=16% Similarity=0.130 Sum_probs=53.0
Q ss_pred EEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEE
Q 006384 83 ELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWM 160 (647)
Q Consensus 83 ~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~ 160 (647)
.+|+.++. -+.+++||+.+++-...-... ..++ +++.. +..+|+.++. .+.+++
T Consensus 2 ~~~~s~~~---------d~~v~~~d~~t~~~~~~~~~~-~~~~---~l~~~~dg~~l~~~~~~-----------~~~v~~ 57 (300)
T TIGR03866 2 KAYVSNEK---------DNTISVIDTATLEVTRTFPVG-QRPR---GITLSKDGKLLYVCASD-----------SDTIQV 57 (300)
T ss_pred cEEEEecC---------CCEEEEEECCCCceEEEEECC-CCCC---ceEECCCCCEEEEEECC-----------CCeEEE
Confidence 46666662 247888898876543322211 1122 22222 3457777653 246889
Q ss_pred EECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCc
Q 006384 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (647)
Q Consensus 161 yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (647)
||+.+.+....-.. .+.+ +.+++. ++.+|+.++. .+.+.+||+.+.+
T Consensus 58 ~d~~~~~~~~~~~~-~~~~---~~~~~~~~g~~l~~~~~~---------~~~l~~~d~~~~~ 106 (300)
T TIGR03866 58 IDLATGEVIGTLPS-GPDP---ELFALHPNGKILYIANED---------DNLVTVIDIETRK 106 (300)
T ss_pred EECCCCcEEEeccC-CCCc---cEEEECCCCCEEEEEcCC---------CCeEEEEECCCCe
Confidence 99988776542211 1111 122222 3456665442 2468889988754
No 69
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.63 E-value=10 Score=43.08 Aligned_cols=117 Identities=15% Similarity=0.145 Sum_probs=64.0
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCC--eEEEecCCC---CC---CCcceeEEEEECCEEEEEeCCcCCCCCccc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPN---SP---PPRSAHQAVSWKNYLYIFGGEFTSPNQERF 152 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~--~W~~l~s~~---~P---~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~ 152 (647)
++.||+... .+.|+.+|..+. .|+.-.... .+ ........++.+++||+...
T Consensus 69 ~g~vyv~s~----------~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~---------- 128 (527)
T TIGR03075 69 DGVMYVTTS----------YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL---------- 128 (527)
T ss_pred CCEEEEECC----------CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC----------
Confidence 688887554 236899998875 587543211 00 00111223555778776432
Q ss_pred cccCcEEEEECCCCc--EEEcccCCCCCC--cceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc--eEEec
Q 006384 153 HHYKDFWMLDLKTNQ--WEQLNLKGCPSP--RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIK 225 (647)
Q Consensus 153 ~~~~dv~~yD~~t~~--W~~~~~~~~P~~--R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~ 225 (647)
-..++.+|..+++ |+.-.. .+.. ....+-++.++.||+-...... .....|+.||..+.+ |+.-.
T Consensus 129 --dg~l~ALDa~TGk~~W~~~~~--~~~~~~~~tssP~v~~g~Vivg~~~~~~----~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 129 --DARLVALDAKTGKVVWSKKNG--DYKAGYTITAAPLVVKGKVITGISGGEF----GVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred --CCEEEEEECCCCCEEeecccc--cccccccccCCcEEECCEEEEeeccccc----CCCcEEEEEECCCCceeEeccC
Confidence 1468999998874 765322 1111 1222345668887774321110 123568899998764 76443
No 70
>PRK05137 tolB translocation protein TolB; Provisional
Probab=94.50 E-value=8.6 Score=42.42 Aligned_cols=194 Identities=13% Similarity=0.000 Sum_probs=95.3
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCc
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R 180 (647)
..+|++|+.+.+.+.++... ......+....+..|++...... ..++|++|+.+.....+... +. .
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~--g~~~~~~~SPDG~~la~~~~~~g---------~~~Iy~~d~~~~~~~~Lt~~--~~-~ 291 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFP--GMTFAPRFSPDGRKVVMSLSQGG---------NTDIYTMDLRSGTTTRLTDS--PA-I 291 (435)
T ss_pred CEEEEEECCCCcEEEeecCC--CcccCcEECCCCCEEEEEEecCC---------CceEEEEECCCCceEEccCC--CC-c
Confidence 47999999999888776421 21111111112345544432211 25799999999887776541 21 1
Q ss_pred ceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCC
Q 006384 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVST 260 (647)
Q Consensus 181 ~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~ 260 (647)
.......-+++.++|..... + ...+|++|+.+...+.+... ...........-+..|++.. ....
T Consensus 292 ~~~~~~spDG~~i~f~s~~~-g-----~~~Iy~~d~~g~~~~~lt~~-----~~~~~~~~~SpdG~~ia~~~-~~~~--- 356 (435)
T PRK05137 292 DTSPSYSPDGSQIVFESDRS-G-----SPQLYVMNADGSNPRRISFG-----GGRYSTPVWSPRGDLIAFTK-QGGG--- 356 (435)
T ss_pred cCceeEcCCCCEEEEEECCC-C-----CCeEEEEECCCCCeEEeecC-----CCcccCeEECCCCCEEEEEE-cCCC---
Confidence 11112222444333432111 1 24789999988877777543 11111111111244444433 2211
Q ss_pred cccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEE-ECCeEEEecceeccccCccccccccCCcEEEEECC
Q 006384 261 DKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV-HKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD 339 (647)
Q Consensus 261 ~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~-~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~ 339 (647)
...++++++.+.....+... ... ..... -+++.++|-...... .....||++|+.
T Consensus 357 ----------~~~i~~~d~~~~~~~~lt~~-----~~~-~~p~~spDG~~i~~~~~~~~~--------~~~~~L~~~dl~ 412 (435)
T PRK05137 357 ----------QFSIGVMKPDGSGERILTSG-----FLV-EGPTWAPNGRVIMFFRQTPGS--------GGAPKLYTVDLT 412 (435)
T ss_pred ----------ceEEEEEECCCCceEeccCC-----CCC-CCCeECCCCCEEEEEEccCCC--------CCcceEEEEECC
Confidence 13588889876655544321 111 11122 255655554332100 002469999998
Q ss_pred CCcEEEeE
Q 006384 340 NHRWYPLE 347 (647)
Q Consensus 340 t~~W~~l~ 347 (647)
...-..+.
T Consensus 413 g~~~~~l~ 420 (435)
T PRK05137 413 GRNEREVP 420 (435)
T ss_pred CCceEEcc
Confidence 76655554
No 71
>PRK04792 tolB translocation protein TolB; Provisional
Probab=94.30 E-value=4.5 Score=44.93 Aligned_cols=147 Identities=10% Similarity=0.108 Sum_probs=78.2
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcceeEEEEEC-CEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYK-HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~-~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (647)
..+|++|+.+++-..+.. .+.. .......-+ .+|++.....+ ..++|++|+.+.+.+++.... .
T Consensus 242 ~~L~~~dl~tg~~~~lt~--~~g~-~~~~~wSPDG~~La~~~~~~g-------~~~Iy~~dl~tg~~~~lt~~~-----~ 306 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTS--FPGI-NGAPRFSPDGKKLALVLSKDG-------QPEIYVVDIATKALTRITRHR-----A 306 (448)
T ss_pred cEEEEEECCCCCeEEecC--CCCC-cCCeeECCCCCEEEEEEeCCC-------CeEEEEEECCCCCeEECccCC-----C
Confidence 579999999887766654 2211 111111123 45655433221 257999999999888775531 1
Q ss_pred CceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEE-ECCeEEEec
Q 006384 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV-HKKRALLFG 313 (647)
Q Consensus 235 ~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~-~~~~iyifG 313 (647)
.-...+....+..|++.....+ ...+|++|+.+..++++...+.. ..+.++ -+++.++|.
T Consensus 307 ~~~~p~wSpDG~~I~f~s~~~g--------------~~~Iy~~dl~~g~~~~Lt~~g~~-----~~~~~~SpDG~~l~~~ 367 (448)
T PRK04792 307 IDTEPSWHPDGKSLIFTSERGG--------------KPQIYRVNLASGKVSRLTFEGEQ-----NLGGSITPDGRSMIMV 367 (448)
T ss_pred CccceEECCCCCEEEEEECCCC--------------CceEEEEECCCCCEEEEecCCCC-----CcCeeECCCCCEEEEE
Confidence 1111111112334544432211 14699999998888887532211 111222 245545454
Q ss_pred ceeccccCccccccccCCcEEEEECCCCcEEEeE
Q 006384 314 GVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (647)
Q Consensus 314 G~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (647)
+... -...||++|+.+.....+.
T Consensus 368 ~~~~-----------g~~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 368 NRTN-----------GKFNIARQDLETGAMQVLT 390 (448)
T ss_pred EecC-----------CceEEEEEECCCCCeEEcc
Confidence 3321 1246999999988776654
No 72
>PRK13684 Ycf48-like protein; Provisional
Probab=93.81 E-value=11 Score=40.19 Aligned_cols=156 Identities=12% Similarity=0.078 Sum_probs=77.2
Q ss_pred CCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE
Q 006384 110 KQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY 188 (647)
Q Consensus 110 ~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~ 188 (647)
-.+|+.+..+. ..+...+.+..+ ++.+|+.|.. ..+++-+-.-.+|+.+.. +..-..+.+...
T Consensus 118 G~tW~~~~~~~-~~~~~~~~i~~~~~~~~~~~g~~------------G~i~~S~DgG~tW~~~~~---~~~g~~~~i~~~ 181 (334)
T PRK13684 118 GKNWTRIPLSE-KLPGSPYLITALGPGTAEMATNV------------GAIYRTTDGGKNWEALVE---DAAGVVRNLRRS 181 (334)
T ss_pred CCCCeEccCCc-CCCCCceEEEEECCCcceeeecc------------ceEEEECCCCCCceeCcC---CCcceEEEEEEC
Confidence 35899886431 122233334444 3456666542 235554445679998875 223344455555
Q ss_pred CCEEEEEecccCCCCceeeeCcEEE-EEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCC
Q 006384 189 KHKIIVFGGFYDTLREVRYYNDLYV-FDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSE 266 (647)
Q Consensus 189 ~~~lyv~GG~~~~~~~~~~~~dv~~-yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~ 266 (647)
.+..|+..|..+ .++. .+.....|+.+.. +..+.-++++.. ++.++++|... .
T Consensus 182 ~~g~~v~~g~~G---------~i~~s~~~gg~tW~~~~~------~~~~~l~~i~~~~~g~~~~vg~~G-~--------- 236 (334)
T PRK13684 182 PDGKYVAVSSRG---------NFYSTWEPGQTAWTPHQR------NSSRRLQSMGFQPDGNLWMLARGG-Q--------- 236 (334)
T ss_pred CCCeEEEEeCCc---------eEEEEcCCCCCeEEEeeC------CCcccceeeeEcCCCCEEEEecCC-E---------
Confidence 444444443221 2222 2334457998854 333444455444 67788887532 1
Q ss_pred CCceeeeEEEE--eCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEecce
Q 006384 267 KGIIHSDLWSL--DPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGV 315 (647)
Q Consensus 267 ~~~~~~dv~~y--d~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG~ 315 (647)
.++ +-.-.+|+.+... ........+++++. ++.+|++|..
T Consensus 237 --------~~~~s~d~G~sW~~~~~~-~~~~~~~l~~v~~~~~~~~~~~G~~ 279 (334)
T PRK13684 237 --------IRFNDPDDLESWSKPIIP-EITNGYGYLDLAYRTPGEIWAGGGN 279 (334)
T ss_pred --------EEEccCCCCCccccccCC-ccccccceeeEEEcCCCCEEEEcCC
Confidence 123 2234589976421 00011222344444 5678888753
No 73
>PRK04792 tolB translocation protein TolB; Provisional
Probab=93.80 E-value=5.3 Score=44.41 Aligned_cols=149 Identities=10% Similarity=0.022 Sum_probs=78.9
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCc
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R 180 (647)
..+|++|+.+.+-+.+... +......+...-+..|++...... ..++|++|+.++....+.... ..
T Consensus 242 ~~L~~~dl~tg~~~~lt~~--~g~~~~~~wSPDG~~La~~~~~~g---------~~~Iy~~dl~tg~~~~lt~~~---~~ 307 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSF--PGINGAPRFSPDGKKLALVLSKDG---------QPEIYVVDIATKALTRITRHR---AI 307 (448)
T ss_pred cEEEEEECCCCCeEEecCC--CCCcCCeeECCCCCEEEEEEeCCC---------CeEEEEEECCCCCeEECccCC---CC
Confidence 4799999998877766542 111111111112445655433211 257999999999888776421 11
Q ss_pred ceeEEEEECC-EEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCC
Q 006384 181 SGHRMVLYKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVS 259 (647)
Q Consensus 181 ~~h~~~~~~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~ 259 (647)
.......-++ +|++.....+ ...+|.+|+.+.++..+.... ... .......-+..|++.+ ....
T Consensus 308 ~~~p~wSpDG~~I~f~s~~~g-------~~~Iy~~dl~~g~~~~Lt~~g----~~~-~~~~~SpDG~~l~~~~-~~~g-- 372 (448)
T PRK04792 308 DTEPSWHPDGKSLIFTSERGG-------KPQIYRVNLASGKVSRLTFEG----EQN-LGGSITPDGRSMIMVN-RTNG-- 372 (448)
T ss_pred ccceEECCCCCEEEEEECCCC-------CceEEEEECCCCCEEEEecCC----CCC-cCeeECCCCCEEEEEE-ecCC--
Confidence 1111112244 4544432211 257999999999998886331 111 1111212244555443 2211
Q ss_pred CcccCCCCCceeeeEEEEeCCCCeEEEeec
Q 006384 260 TDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (647)
Q Consensus 260 ~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~ 289 (647)
...++++|+.+.....+..
T Consensus 373 -----------~~~I~~~dl~~g~~~~lt~ 391 (448)
T PRK04792 373 -----------KFNIARQDLETGAMQVLTS 391 (448)
T ss_pred -----------ceEEEEEECCCCCeEEccC
Confidence 1358999998888776643
No 74
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=93.68 E-value=1 Score=46.63 Aligned_cols=112 Identities=17% Similarity=0.288 Sum_probs=69.1
Q ss_pred eCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEE
Q 006384 208 YNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (647)
Q Consensus 208 ~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (647)
...+..||+.+.+|..+... ..+ .-.++... +++|||.|-.... +.....+-.||..+.+|+.
T Consensus 15 C~~lC~yd~~~~qW~~~g~~-----i~G-~V~~l~~~~~~~Llv~G~ft~~----------~~~~~~la~yd~~~~~w~~ 78 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNG-----ISG-TVTDLQWASNNQLLVGGNFTLN----------GTNSSNLATYDFKNQTWSS 78 (281)
T ss_pred CCEEEEEECCCCEeecCCCC-----ceE-EEEEEEEecCCEEEEEEeeEEC----------CCCceeEEEEecCCCeeee
Confidence 67899999999999987654 112 22333333 7778877755433 1134458899999999999
Q ss_pred eecC--CCCCCCceeeEEEEEC-CeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 287 VKKI--GMPPGPRAGFSMCVHK-KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 287 v~~~--g~~P~~R~~~s~~~~~-~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
+... ...|.+-...+....+ ..+++.|.... -..-|..| +..+|..+..
T Consensus 79 ~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~-----------g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 79 LGGGSSNSIPGPVTALTFISNDGSNFWVAGRSAN-----------GSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred cCCcccccCCCcEEEEEeeccCCceEEEeceecC-----------CCceEEEE--cCCceEeccc
Confidence 8762 2345443222222233 45777776421 02235555 6678999887
No 75
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=93.53 E-value=16 Score=41.16 Aligned_cols=122 Identities=14% Similarity=0.188 Sum_probs=62.3
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCC--eEEEecCCC--CCCCc-ceeEEEEEC-CEEEEEeCCcCCCCCccccc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPN--SPPPR-SAHQAVSWK-NYLYIFGGEFTSPNQERFHH 154 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~--~W~~l~s~~--~P~~R-~~ha~v~~~-~~iyv~GG~~~~~~~~~~~~ 154 (647)
++.||+.... ..++.+|..+. .|+.-.... ...+. .....++.+ +.||+...
T Consensus 61 ~g~vy~~~~~----------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~------------ 118 (488)
T cd00216 61 DGDMYFTTSH----------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF------------ 118 (488)
T ss_pred CCEEEEeCCC----------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC------------
Confidence 7888876541 47899998865 487533211 00010 111223445 77776432
Q ss_pred cCcEEEEECCCC--cEEEcccCCC-CCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc--eEEec
Q 006384 155 YKDFWMLDLKTN--QWEQLNLKGC-PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIK 225 (647)
Q Consensus 155 ~~dv~~yD~~t~--~W~~~~~~~~-P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~ 225 (647)
-..|+.||..+. .|+.-..... +......+.++.++.+|+ |..............++.||..+.+ |+.-.
T Consensus 119 ~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 119 DGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred CCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 146889998876 4775433110 000112233555666665 4221110000123578999998754 87543
No 76
>PRK04922 tolB translocation protein TolB; Provisional
Probab=93.38 E-value=10 Score=41.80 Aligned_cols=184 Identities=11% Similarity=-0.016 Sum_probs=93.2
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCc
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R 180 (647)
..+|++|+.+++-+.+... +......+...-+.+|++...... ..++|++|+.++....+... +. .
T Consensus 228 ~~l~~~dl~~g~~~~l~~~--~g~~~~~~~SpDG~~l~~~~s~~g---------~~~Iy~~d~~~g~~~~lt~~--~~-~ 293 (433)
T PRK04922 228 SAIYVQDLATGQRELVASF--RGINGAPSFSPDGRRLALTLSRDG---------NPEIYVMDLGSRQLTRLTNH--FG-I 293 (433)
T ss_pred cEEEEEECCCCCEEEeccC--CCCccCceECCCCCEEEEEEeCCC---------CceEEEEECCCCCeEECccC--CC-C
Confidence 4689999998887777542 111111111111345554432211 14799999999887766541 11 1
Q ss_pred ceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe--CCEEEEEecccCCC
Q 006384 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEV 258 (647)
Q Consensus 181 ~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~ 258 (647)
.......-+++.++|..... + ...+|.+|+.+..+..+... . ......... +..|++..+...
T Consensus 294 ~~~~~~spDG~~l~f~sd~~-g-----~~~iy~~dl~~g~~~~lt~~-----g--~~~~~~~~SpDG~~Ia~~~~~~~-- 358 (433)
T PRK04922 294 DTEPTWAPDGKSIYFTSDRG-G-----RPQIYRVAASGGSAERLTFQ-----G--NYNARASVSPDGKKIAMVHGSGG-- 358 (433)
T ss_pred ccceEECCCCCEEEEEECCC-C-----CceEEEEECCCCCeEEeecC-----C--CCccCEEECCCCCEEEEEECCCC--
Confidence 11111122444334332111 1 24789999988888877643 1 111122222 455555543211
Q ss_pred CCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEEC
Q 006384 259 STDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQL 338 (647)
Q Consensus 259 ~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~ 338 (647)
. ..++++|+.+.....+...+ . .......-+++.++|..... -...||.+++
T Consensus 359 ----------~--~~I~v~d~~~g~~~~Lt~~~---~--~~~p~~spdG~~i~~~s~~~-----------g~~~L~~~~~ 410 (433)
T PRK04922 359 ----------Q--YRIAVMDLSTGSVRTLTPGS---L--DESPSFAPNGSMVLYATREG-----------GRGVLAAVST 410 (433)
T ss_pred ----------c--eeEEEEECCCCCeEECCCCC---C--CCCceECCCCCEEEEEEecC-----------CceEEEEEEC
Confidence 1 26899999888877664321 1 11111223566666654321 1245888888
Q ss_pred CCC
Q 006384 339 DNH 341 (647)
Q Consensus 339 ~t~ 341 (647)
...
T Consensus 411 ~g~ 413 (433)
T PRK04922 411 DGR 413 (433)
T ss_pred CCC
Confidence 643
No 77
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=93.33 E-value=12 Score=40.70 Aligned_cols=147 Identities=11% Similarity=-0.017 Sum_probs=77.7
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCc
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R 180 (647)
..+|+||+.+.....+.... ......+...-+..|++...... ..++|.+|+.+.....+.... ...
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~--~~~~~~~~spDg~~l~~~~~~~~---------~~~i~~~d~~~~~~~~l~~~~--~~~ 280 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFP--GMNGAPAFSPDGSKLAVSLSKDG---------NPDIYVMDLDGKQLTRLTNGP--GID 280 (417)
T ss_pred cEEEEEECCCCCEEEeecCC--CCccceEECCCCCEEEEEECCCC---------CccEEEEECCCCCEEECCCCC--CCC
Confidence 47899999888766654321 11111111111345655433211 257999999988877775421 111
Q ss_pred ceeEEEEECC-EEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCC
Q 006384 181 SGHRMVLYKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEV 258 (647)
Q Consensus 181 ~~h~~~~~~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~ 258 (647)
.. .....++ +|++.....+ ...+|.+|+.+..+..+.... ......+.. ++..+++......
T Consensus 281 ~~-~~~s~dg~~l~~~s~~~g-------~~~iy~~d~~~~~~~~l~~~~-------~~~~~~~~spdg~~i~~~~~~~~- 344 (417)
T TIGR02800 281 TE-PSWSPDGKSIAFTSDRGG-------SPQIYMMDADGGEVRRLTFRG-------GYNASPSWSPDGDLIAFVHREGG- 344 (417)
T ss_pred CC-EEECCCCCEEEEEECCCC-------CceEEEEECCCCCEEEeecCC-------CCccCeEECCCCCEEEEEEccCC-
Confidence 11 1111244 4444332211 247999999988887775431 111222222 4555555543321
Q ss_pred CCcccCCCCCceeeeEEEEeCCCCeEEEee
Q 006384 259 STDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (647)
Q Consensus 259 ~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~ 288 (647)
...++.+|+.+..++.+.
T Consensus 345 ------------~~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 345 ------------GFNIAVMDLDGGGERVLT 362 (417)
T ss_pred ------------ceEEEEEeCCCCCeEEcc
Confidence 235899999887666654
No 78
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.06 E-value=2.1 Score=43.56 Aligned_cols=111 Identities=20% Similarity=0.296 Sum_probs=77.3
Q ss_pred EEEE-ECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcc
Q 006384 184 RMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDK 262 (647)
Q Consensus 184 ~~~~-~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~ 262 (647)
+... .++.||.--|.++ .+.+..||+.+++-...... |..-+|-++++++++||.+--..+.
T Consensus 49 GL~~~~~g~LyESTG~yG-------~S~l~~~d~~tg~~~~~~~l-----~~~~FgEGit~~~d~l~qLTWk~~~----- 111 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYG-------QSSLRKVDLETGKVLQSVPL-----PPRYFGEGITILGDKLYQLTWKEGT----- 111 (264)
T ss_dssp EEEEEETTEEEEEECSTT-------EEEEEEEETTTSSEEEEEE------TTT--EEEEEEETTEEEEEESSSSE-----
T ss_pred cEEecCCCEEEEeCCCCC-------cEEEEEEECCCCcEEEEEEC-----CccccceeEEEECCEEEEEEecCCe-----
Confidence 3444 5789999888765 36788999999987766666 6677888999999999999766544
Q ss_pred cCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 263 NQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 263 ~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
+++||+.+. +.+... +.+.-|-++|.-+..+|+--|. +.|+.+||.+-+
T Consensus 112 -----------~f~yd~~tl--~~~~~~---~y~~EGWGLt~dg~~Li~SDGS---------------~~L~~~dP~~f~ 160 (264)
T PF05096_consen 112 -----------GFVYDPNTL--KKIGTF---PYPGEGWGLTSDGKRLIMSDGS---------------SRLYFLDPETFK 160 (264)
T ss_dssp -----------EEEEETTTT--EEEEEE---E-SSS--EEEECSSCEEEE-SS---------------SEEEEE-TTT-S
T ss_pred -----------EEEEccccc--eEEEEE---ecCCcceEEEcCCCEEEEECCc---------------cceEEECCcccc
Confidence 889999875 333322 3445778888778888888873 569999998643
No 79
>PRK00178 tolB translocation protein TolB; Provisional
Probab=93.00 E-value=11 Score=41.50 Aligned_cols=147 Identities=11% Similarity=0.071 Sum_probs=77.5
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CC-EEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWP 233 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P 233 (647)
..+|++|+.++.-..+... +. ........ ++ +|++.....+ ..++|++|+.+...+.+... +
T Consensus 223 ~~l~~~~l~~g~~~~l~~~--~g--~~~~~~~SpDG~~la~~~~~~g-------~~~Iy~~d~~~~~~~~lt~~-----~ 286 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNF--EG--LNGAPAWSPDGSKLAFVLSKDG-------NPEIYVMDLASRQLSRVTNH-----P 286 (430)
T ss_pred CEEEEEECCCCCEEEccCC--CC--CcCCeEECCCCCEEEEEEccCC-------CceEEEEECCCCCeEEcccC-----C
Confidence 4799999999887776541 11 11112222 34 4544322111 25799999999988877543 1
Q ss_pred CCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEE-ECCeEEEe
Q 006384 234 SPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV-HKKRALLF 312 (647)
Q Consensus 234 ~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~-~~~~iyif 312 (647)
..-..+....-+..|++.....+ ...+|.+++.+..+.++...+ ........ -+++.++|
T Consensus 287 ~~~~~~~~spDg~~i~f~s~~~g--------------~~~iy~~d~~~g~~~~lt~~~-----~~~~~~~~Spdg~~i~~ 347 (430)
T PRK00178 287 AIDTEPFWGKDGRTLYFTSDRGG--------------KPQIYKVNVNGGRAERVTFVG-----NYNARPRLSADGKTLVM 347 (430)
T ss_pred CCcCCeEECCCCCEEEEEECCCC--------------CceEEEEECCCCCEEEeecCC-----CCccceEECCCCCEEEE
Confidence 11111111112345554432111 136899999888888775321 11111222 24444444
Q ss_pred cceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 313 GGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 313 GG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
..... + ...|+++|+.+..++.+..
T Consensus 348 ~~~~~---------~--~~~l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 348 VHRQD---------G--NFHVAAQDLQRGSVRILTD 372 (430)
T ss_pred EEccC---------C--ceEEEEEECCCCCEEEccC
Confidence 33221 1 2359999999988776653
No 80
>PRK05137 tolB translocation protein TolB; Provisional
Probab=92.88 E-value=11 Score=41.71 Aligned_cols=147 Identities=14% Similarity=0.092 Sum_probs=73.5
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcceeEEEEECC-EEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (647)
..+|++|+.++....+.. .+..-. .....-++ +|++.....+ ..++|++|+.+....++... +.
T Consensus 226 ~~i~~~dl~~g~~~~l~~--~~g~~~-~~~~SPDG~~la~~~~~~g-------~~~Iy~~d~~~~~~~~Lt~~-----~~ 290 (435)
T PRK05137 226 PRVYLLDLETGQRELVGN--FPGMTF-APRFSPDGRKVVMSLSQGG-------NTDIYTMDLRSGTTTRLTDS-----PA 290 (435)
T ss_pred CEEEEEECCCCcEEEeec--CCCccc-CcEECCCCCEEEEEEecCC-------CceEEEEECCCCceEEccCC-----CC
Confidence 579999999998877754 221111 11122244 4544333211 35799999998887776554 11
Q ss_pred CceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecc
Q 006384 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314 (647)
Q Consensus 235 ~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG 314 (647)
.-........+..|++.....+ ...+|++|+.+...+++... ..+.......-+++.++|..
T Consensus 291 ~~~~~~~spDG~~i~f~s~~~g--------------~~~Iy~~d~~g~~~~~lt~~----~~~~~~~~~SpdG~~ia~~~ 352 (435)
T PRK05137 291 IDTSPSYSPDGSQIVFESDRSG--------------SPQLYVMNADGSNPRRISFG----GGRYSTPVWSPRGDLIAFTK 352 (435)
T ss_pred ccCceeEcCCCCEEEEEECCCC--------------CCeEEEEECCCCCeEEeecC----CCcccCeEECCCCCEEEEEE
Confidence 1111111112334443321111 23689999888777776431 11111111112444444432
Q ss_pred eeccccCccccccccCCcEEEEECCCCcEEEe
Q 006384 315 VVDMEMKGDVIMSLFLNELYGFQLDNHRWYPL 346 (647)
Q Consensus 315 ~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l 346 (647)
... . ...|+++|+.+.....+
T Consensus 353 ~~~---------~--~~~i~~~d~~~~~~~~l 373 (435)
T PRK05137 353 QGG---------G--QFSIGVMKPDGSGERIL 373 (435)
T ss_pred cCC---------C--ceEEEEEECCCCceEec
Confidence 211 0 24689999876655444
No 81
>PRK00178 tolB translocation protein TolB; Provisional
Probab=92.84 E-value=18 Score=39.79 Aligned_cols=145 Identities=6% Similarity=-0.027 Sum_probs=77.4
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCC
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~ 178 (647)
..+|++|+.+++-+.+.... . ...+.... +.+|++...... ..++|++|+.+.....+... +.
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~--g--~~~~~~~SpDG~~la~~~~~~g---------~~~Iy~~d~~~~~~~~lt~~--~~ 287 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFE--G--LNGAPAWSPDGSKLAFVLSKDG---------NPEIYVMDLASRQLSRVTNH--PA 287 (430)
T ss_pred CEEEEEECCCCCEEEccCCC--C--CcCCeEECCCCCEEEEEEccCC---------CceEEEEECCCCCeEEcccC--CC
Confidence 47999999988877775421 1 11111221 344544322111 15799999999988877541 11
Q ss_pred CcceeEEEEECC-EEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEE--eCCEEEEEeccc
Q 006384 179 PRSGHRMVLYKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFV--YQDEVFLYGGYS 255 (647)
Q Consensus 179 ~R~~h~~~~~~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~--~~~~Iyv~GG~~ 255 (647)
........-++ +||+.....+ ...+|.+|+.+..+.++.... ........ .+..|++.....
T Consensus 288 -~~~~~~~spDg~~i~f~s~~~g-------~~~iy~~d~~~g~~~~lt~~~-------~~~~~~~~Spdg~~i~~~~~~~ 352 (430)
T PRK00178 288 -IDTEPFWGKDGRTLYFTSDRGG-------KPQIYKVNVNGGRAERVTFVG-------NYNARPRLSADGKTLVMVHRQD 352 (430)
T ss_pred -CcCCeEECCCCCEEEEEECCCC-------CceEEEEECCCCCEEEeecCC-------CCccceEECCCCCEEEEEEccC
Confidence 11111112244 4554432111 247899999998888875431 11111122 244555443221
Q ss_pred CCCCCcccCCCCCceeeeEEEEeCCCCeEEEeec
Q 006384 256 KEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (647)
Q Consensus 256 ~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~ 289 (647)
+ ...++++|+.+...+.+..
T Consensus 353 ~--------------~~~l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 353 G--------------NFHVAAQDLQRGSVRILTD 372 (430)
T ss_pred C--------------ceEEEEEECCCCCEEEccC
Confidence 1 1258999999888777754
No 82
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=92.70 E-value=9.2 Score=41.59 Aligned_cols=147 Identities=15% Similarity=0.066 Sum_probs=77.9
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcceeEEEEECC-EEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (647)
..++++|+.++....+.. .+..... ....-++ .|++.....+ ...+|.+|+.+.....+.... .
T Consensus 214 ~~i~v~d~~~g~~~~~~~--~~~~~~~-~~~spDg~~l~~~~~~~~-------~~~i~~~d~~~~~~~~l~~~~-----~ 278 (417)
T TIGR02800 214 PEIYVQDLATGQREKVAS--FPGMNGA-PAFSPDGSKLAVSLSKDG-------NPDIYVMDLDGKQLTRLTNGP-----G 278 (417)
T ss_pred cEEEEEECCCCCEEEeec--CCCCccc-eEECCCCCEEEEEECCCC-------CccEEEEECCCCCEEECCCCC-----C
Confidence 569999999887666543 1211111 1112243 4555433211 257999999988877775431 1
Q ss_pred CceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEE-ECCeEEEec
Q 006384 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV-HKKRALLFG 313 (647)
Q Consensus 235 ~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~-~~~~iyifG 313 (647)
..........+..|++...... ...+|++++.+..+.++...+ ......+. -+++.+++.
T Consensus 279 ~~~~~~~s~dg~~l~~~s~~~g--------------~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~i~~~ 339 (417)
T TIGR02800 279 IDTEPSWSPDGKSIAFTSDRGG--------------SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGDLIAFV 339 (417)
T ss_pred CCCCEEECCCCCEEEEEECCCC--------------CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCCEEEEE
Confidence 1111111112334444432211 136899999888887775421 11122222 256666665
Q ss_pred ceeccccCccccccccCCcEEEEECCCCcEEEeE
Q 006384 314 GVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (647)
Q Consensus 314 G~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (647)
.... -...|+.+|+.+..+..+.
T Consensus 340 ~~~~-----------~~~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 340 HREG-----------GGFNIAVMDLDGGGERVLT 362 (417)
T ss_pred EccC-----------CceEEEEEeCCCCCeEEcc
Confidence 4321 1246999999887665554
No 83
>PRK04922 tolB translocation protein TolB; Provisional
Probab=92.62 E-value=10 Score=41.74 Aligned_cols=146 Identities=10% Similarity=0.087 Sum_probs=75.3
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcceeEEEEECC-EEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (647)
..+|++|+.+++...+.. .+.. .......-++ +|++.....+ ..++|++|+.+....++... +.
T Consensus 228 ~~l~~~dl~~g~~~~l~~--~~g~-~~~~~~SpDG~~l~~~~s~~g-------~~~Iy~~d~~~g~~~~lt~~-----~~ 292 (433)
T PRK04922 228 SAIYVQDLATGQRELVAS--FRGI-NGAPSFSPDGRRLALTLSRDG-------NPEIYVMDLGSRQLTRLTNH-----FG 292 (433)
T ss_pred cEEEEEECCCCCEEEecc--CCCC-ccCceECCCCCEEEEEEeCCC-------CceEEEEECCCCCeEECccC-----CC
Confidence 569999999888777654 2211 1111122234 4554432211 24799999998877666543 11
Q ss_pred CceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCe-EEEe
Q 006384 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKR-ALLF 312 (647)
Q Consensus 235 ~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~-iyif 312 (647)
.-...+....+..|++.....+ ...+|.++..+..++++...+ ......+.. +++ |++.
T Consensus 293 ~~~~~~~spDG~~l~f~sd~~g--------------~~~iy~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~ 353 (433)
T PRK04922 293 IDTEPTWAPDGKSIYFTSDRGG--------------RPQIYRVAASGGSAERLTFQG-----NYNARASVSPDGKKIAMV 353 (433)
T ss_pred CccceEECCCCCEEEEEECCCC--------------CceEEEEECCCCCeEEeecCC-----CCccCEEECCCCCEEEEE
Confidence 1111111111333443322211 136899999888887775422 111122222 444 4443
Q ss_pred cceeccccCccccccccCCcEEEEECCCCcEEEeE
Q 006384 313 GGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (647)
Q Consensus 313 GG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (647)
.+... -..|+++|+.+.....+.
T Consensus 354 ~~~~~------------~~~I~v~d~~~g~~~~Lt 376 (433)
T PRK04922 354 HGSGG------------QYRIAVMDLSTGSVRTLT 376 (433)
T ss_pred ECCCC------------ceeEEEEECCCCCeEECC
Confidence 33111 136999999888777554
No 84
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=92.53 E-value=5.4 Score=42.01 Aligned_cols=141 Identities=16% Similarity=0.195 Sum_probs=83.7
Q ss_pred CEEEEEeCCcCCCCCcccccc-CcEEEEECCCC-----cEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeee
Q 006384 135 NYLYIFGGEFTSPNQERFHHY-KDFWMLDLKTN-----QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYY 208 (647)
Q Consensus 135 ~~iyv~GG~~~~~~~~~~~~~-~dv~~yD~~t~-----~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~ 208 (647)
..++++|........ .... ..++.|++... ++..+... +..-.-++++.++++|++.-|
T Consensus 42 ~~~ivVGT~~~~~~~--~~~~~Gri~v~~i~~~~~~~~~l~~i~~~--~~~g~V~ai~~~~~~lv~~~g----------- 106 (321)
T PF03178_consen 42 KEYIVVGTAFNYGED--PEPSSGRILVFEISESPENNFKLKLIHST--EVKGPVTAICSFNGRLVVAVG----------- 106 (321)
T ss_dssp SEEEEEEEEE--TTS--SS-S-EEEEEEEECSS-----EEEEEEEE--EESS-EEEEEEETTEEEEEET-----------
T ss_pred cCEEEEEeccccccc--ccccCcEEEEEEEEcccccceEEEEEEEE--eecCcceEhhhhCCEEEEeec-----------
Confidence 466677754332221 0112 56888988884 56655442 223335567778999777655
Q ss_pred CcEEEEEcCCCc-eEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEe
Q 006384 209 NDLYVFDLDQFK-WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (647)
Q Consensus 209 ~dv~~yD~~t~~-W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v 287 (647)
+.+++|++.... +...... ..+-...++.++++.|+| |-.... -.++.|+....+-..+
T Consensus 107 ~~l~v~~l~~~~~l~~~~~~-----~~~~~i~sl~~~~~~I~v-gD~~~s--------------v~~~~~~~~~~~l~~v 166 (321)
T PF03178_consen 107 NKLYVYDLDNSKTLLKKAFY-----DSPFYITSLSVFKNYILV-GDAMKS--------------VSLLRYDEENNKLILV 166 (321)
T ss_dssp TEEEEEEEETTSSEEEEEEE------BSSSEEEEEEETTEEEE-EESSSS--------------EEEEEEETTTE-EEEE
T ss_pred CEEEEEEccCcccchhhhee-----cceEEEEEEeccccEEEE-EEcccC--------------EEEEEEEccCCEEEEE
Confidence 467888888777 8887776 334466666777886654 433222 1356778767777777
Q ss_pred ecCCCCCCCceeeEEEEE-CCeEEEecc
Q 006384 288 KKIGMPPGPRAGFSMCVH-KKRALLFGG 314 (647)
Q Consensus 288 ~~~g~~P~~R~~~s~~~~-~~~iyifGG 314 (647)
... +.++...++.++ ++. .++++
T Consensus 167 a~d---~~~~~v~~~~~l~d~~-~~i~~ 190 (321)
T PF03178_consen 167 ARD---YQPRWVTAAEFLVDED-TIIVG 190 (321)
T ss_dssp EEE---SS-BEEEEEEEE-SSS-EEEEE
T ss_pred Eec---CCCccEEEEEEecCCc-EEEEE
Confidence 664 557777777777 665 44444
No 85
>PRK03629 tolB translocation protein TolB; Provisional
Probab=92.19 E-value=19 Score=39.74 Aligned_cols=149 Identities=11% Similarity=0.053 Sum_probs=76.0
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcceeEEEEECC-EEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (647)
..+|++|+.+++-..+.. .+.. .......-++ +|++.....+ ...+|++|+.+....++... +.
T Consensus 223 ~~i~i~dl~~G~~~~l~~--~~~~-~~~~~~SPDG~~La~~~~~~g-------~~~I~~~d~~tg~~~~lt~~-----~~ 287 (429)
T PRK03629 223 SALVIQTLANGAVRQVAS--FPRH-NGAPAFSPDGSKLAFALSKTG-------SLNLYVMDLASGQIRQVTDG-----RS 287 (429)
T ss_pred cEEEEEECCCCCeEEccC--CCCC-cCCeEECCCCCEEEEEEcCCC-------CcEEEEEECCCCCEEEccCC-----CC
Confidence 468999998887666654 1211 1111112244 4555433211 23599999999888777543 11
Q ss_pred CceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecc
Q 006384 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314 (647)
Q Consensus 235 ~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG 314 (647)
......... ++..++|...... ...+|.+++.+..-.++...+ .........-+++.++|.+
T Consensus 288 ~~~~~~wSP-DG~~I~f~s~~~g-------------~~~Iy~~d~~~g~~~~lt~~~----~~~~~~~~SpDG~~Ia~~~ 349 (429)
T PRK03629 288 NNTEPTWFP-DSQNLAYTSDQAG-------------RPQVYKVNINGGAPQRITWEG----SQNQDADVSSDGKFMVMVS 349 (429)
T ss_pred CcCceEECC-CCCEEEEEeCCCC-------------CceEEEEECCCCCeEEeecCC----CCccCEEECCCCCEEEEEE
Confidence 111111111 4443333322111 136899998877666664321 1111111122455555543
Q ss_pred eeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 315 VVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 315 ~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
... -...|+++|+.++.+..+..
T Consensus 350 ~~~-----------g~~~I~~~dl~~g~~~~Lt~ 372 (429)
T PRK03629 350 SNG-----------GQQHIAKQDLATGGVQVLTD 372 (429)
T ss_pred ccC-----------CCceEEEEECCCCCeEEeCC
Confidence 321 02469999999988876653
No 86
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=92.13 E-value=13 Score=36.46 Aligned_cols=111 Identities=14% Similarity=0.165 Sum_probs=52.0
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCcc
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~ 151 (647)
++...| ++.++++|+. -+.+..|+..+..-....... . ..-..+... ++..+++++..
T Consensus 14 ~~~~~~--~~~~l~~~~~---------~g~i~i~~~~~~~~~~~~~~~--~-~~i~~~~~~~~~~~l~~~~~~------- 72 (289)
T cd00200 14 CVAFSP--DGKLLATGSG---------DGTIKVWDLETGELLRTLKGH--T-GPVRDVAASADGTYLASGSSD------- 72 (289)
T ss_pred EEEEcC--CCCEEEEeec---------CcEEEEEEeeCCCcEEEEecC--C-cceeEEEECCCCCEEEEEcCC-------
Confidence 344444 4567777762 236777777765422111110 1 111122222 34466666642
Q ss_pred ccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCc
Q 006384 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (647)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (647)
..+.+||+.+......-. .....-.++... ++.+++.|+. ...+.+||+.+.+
T Consensus 73 ----~~i~i~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~---------~~~i~~~~~~~~~ 126 (289)
T cd00200 73 ----KTIRLWDLETGECVRTLT---GHTSYVSSVAFSPDGRILSSSSR---------DKTIKVWDVETGK 126 (289)
T ss_pred ----CeEEEEEcCcccceEEEe---ccCCcEEEEEEcCCCCEEEEecC---------CCeEEEEECCCcE
Confidence 468888887653221111 111112222333 3356666552 2468888887544
No 87
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=91.93 E-value=13 Score=36.30 Aligned_cols=70 Identities=10% Similarity=0.068 Sum_probs=34.8
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCcc
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~ 151 (647)
.+...+ ++..+++|+. -+.+++|++.+......-.. ....-.++... ++.+++.|+..
T Consensus 56 ~~~~~~--~~~~l~~~~~---------~~~i~i~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~------- 114 (289)
T cd00200 56 DVAASA--DGTYLASGSS---------DKTIRLWDLETGECVRTLTG---HTSYVSSVAFSPDGRILSSSSRD------- 114 (289)
T ss_pred EEEECC--CCCEEEEEcC---------CCeEEEEEcCcccceEEEec---cCCcEEEEEEcCCCCEEEEecCC-------
Confidence 344444 4556666662 24678888876432211111 11112222333 34566666521
Q ss_pred ccccCcEEEEECCCCc
Q 006384 152 FHHYKDFWMLDLKTNQ 167 (647)
Q Consensus 152 ~~~~~dv~~yD~~t~~ 167 (647)
..+.+||+.+..
T Consensus 115 ----~~i~~~~~~~~~ 126 (289)
T cd00200 115 ----KTIKVWDVETGK 126 (289)
T ss_pred ----CeEEEEECCCcE
Confidence 468889987544
No 88
>PRK02889 tolB translocation protein TolB; Provisional
Probab=91.61 E-value=19 Score=39.60 Aligned_cols=147 Identities=11% Similarity=0.055 Sum_probs=72.9
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcceeEEEEECC-EEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (647)
..+|++|+.++.=..+.. .+. ...+....-++ +|++.....+ ..++|.+|+.+....++... ..
T Consensus 220 ~~I~~~dl~~g~~~~l~~--~~g-~~~~~~~SPDG~~la~~~~~~g-------~~~Iy~~d~~~~~~~~lt~~-----~~ 284 (427)
T PRK02889 220 PVVYVHDLATGRRRVVAN--FKG-SNSAPAWSPDGRTLAVALSRDG-------NSQIYTVNADGSGLRRLTQS-----SG 284 (427)
T ss_pred cEEEEEECCCCCEEEeec--CCC-CccceEECCCCCEEEEEEccCC-------CceEEEEECCCCCcEECCCC-----CC
Confidence 469999998887555543 121 11111112244 5554333221 35799999988776666443 11
Q ss_pred CceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEE-ECCeEEEec
Q 006384 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV-HKKRALLFG 313 (647)
Q Consensus 235 ~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~-~~~~iyifG 313 (647)
.....+...-+..|++.....+ ...+|.++..+...+++...+ ......++ -+++.+++.
T Consensus 285 ~~~~~~wSpDG~~l~f~s~~~g--------------~~~Iy~~~~~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~ 345 (427)
T PRK02889 285 IDTEPFFSPDGRSIYFTSDRGG--------------APQIYRMPASGGAAQRVTFTG-----SYNTSPRISPDGKLLAYI 345 (427)
T ss_pred CCcCeEEcCCCCEEEEEecCCC--------------CcEEEEEECCCCceEEEecCC-----CCcCceEECCCCCEEEEE
Confidence 1111111111334444322111 135889998877777765321 11112222 245444443
Q ss_pred ceeccccCccccccccCCcEEEEECCCCcEEEeE
Q 006384 314 GVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (647)
Q Consensus 314 G~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (647)
.... . ...|+++|+.+.....+.
T Consensus 346 s~~~---------g--~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 346 SRVG---------G--AFKLYVQDLATGQVTALT 368 (427)
T ss_pred EccC---------C--cEEEEEEECCCCCeEEcc
Confidence 3221 0 136999999887766554
No 89
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=91.36 E-value=21 Score=37.48 Aligned_cols=113 Identities=11% Similarity=0.055 Sum_probs=52.6
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECC-CCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVE-KQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPN 148 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~-~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~ 148 (647)
+.+++.|. +..||+.+.. .+.+..|++. +.++..+.... .+-..+.++.. +..||+..- .
T Consensus 38 ~~l~~spd-~~~lyv~~~~---------~~~i~~~~~~~~g~l~~~~~~~--~~~~p~~i~~~~~g~~l~v~~~-~---- 100 (330)
T PRK11028 38 QPMVISPD-KRHLYVGVRP---------EFRVLSYRIADDGALTFAAESP--LPGSPTHISTDHQGRFLFSASY-N---- 100 (330)
T ss_pred ccEEECCC-CCEEEEEECC---------CCcEEEEEECCCCceEEeeeec--CCCCceEEEECCCCCEEEEEEc-C----
Confidence 34555552 3556664431 1456667765 45665444221 11111223333 345666542 1
Q ss_pred CccccccCcEEEEECCCC-c-EEEcccCCCCCCcceeEEEEE-C-CEEEEEecccCCCCceeeeCcEEEEEcCC
Q 006384 149 QERFHHYKDFWMLDLKTN-Q-WEQLNLKGCPSPRSGHRMVLY-K-HKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (647)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~-~-W~~~~~~~~P~~R~~h~~~~~-~-~~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (647)
-+.+.+|++.++ . ...+.. .+.....|.+++. + +.+|+..- ..+.|.+||+.+
T Consensus 101 ------~~~v~v~~~~~~g~~~~~~~~--~~~~~~~~~~~~~p~g~~l~v~~~---------~~~~v~v~d~~~ 157 (330)
T PRK11028 101 ------ANCVSVSPLDKDGIPVAPIQI--IEGLEGCHSANIDPDNRTLWVPCL---------KEDRIRLFTLSD 157 (330)
T ss_pred ------CCeEEEEEECCCCCCCCceee--ccCCCcccEeEeCCCCCEEEEeeC---------CCCEEEEEEECC
Confidence 145667776532 1 111211 1222233555444 3 35665432 136789999876
No 90
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=91.28 E-value=9.6 Score=40.11 Aligned_cols=141 Identities=18% Similarity=0.282 Sum_probs=84.1
Q ss_pred CEEEEEcCeecCCCcceee-CcEEEEECCCC-----eEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCcccccc
Q 006384 82 TELILYGGEFYNGNKTYVY-GDLYRYDVEKQ-----EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHY 155 (647)
Q Consensus 82 ~~lyv~GG~~~~g~~~~~~-ndl~~yd~~~~-----~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~ 155 (647)
..++++|-.+..+...... ..++.|++... +++.+..... +-.-++++.++++|++.-|
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~--~g~V~ai~~~~~~lv~~~g------------- 106 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEV--KGPVTAICSFNGRLVVAVG------------- 106 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEE--SS-EEEEEEETTEEEEEET-------------
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEee--cCcceEhhhhCCEEEEeec-------------
Confidence 5777778765444333233 78999999885 6666654332 2335677778999777666
Q ss_pred CcEEEEECCCCc-EEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCC
Q 006384 156 KDFWMLDLKTNQ-WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (647)
Q Consensus 156 ~dv~~yD~~t~~-W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (647)
+.+.+|++.... +..... ...+-....+.+++++|++ |-... .-.++.|+....+-..+... +.
T Consensus 107 ~~l~v~~l~~~~~l~~~~~--~~~~~~i~sl~~~~~~I~v-gD~~~-------sv~~~~~~~~~~~l~~va~d-----~~ 171 (321)
T PF03178_consen 107 NKLYVYDLDNSKTLLKKAF--YDSPFYITSLSVFKNYILV-GDAMK-------SVSLLRYDEENNKLILVARD-----YQ 171 (321)
T ss_dssp TEEEEEEEETTSSEEEEEE--E-BSSSEEEEEEETTEEEE-EESSS-------SEEEEEEETTTE-EEEEEEE-----SS
T ss_pred CEEEEEEccCcccchhhhe--ecceEEEEEEeccccEEEE-EEccc-------CEEEEEEEccCCEEEEEEec-----CC
Confidence 467788877777 877776 3333455566777886664 43211 11244567766667777665 56
Q ss_pred CceeeeEEEe-CCEEEEEe
Q 006384 235 PRSGFQFFVY-QDEVFLYG 252 (647)
Q Consensus 235 ~R~~~s~~~~-~~~Iyv~G 252 (647)
++...++..+ ++..++.+
T Consensus 172 ~~~v~~~~~l~d~~~~i~~ 190 (321)
T PF03178_consen 172 PRWVTAAEFLVDEDTIIVG 190 (321)
T ss_dssp -BEEEEEEEE-SSSEEEEE
T ss_pred CccEEEEEEecCCcEEEEE
Confidence 7776677666 54444444
No 91
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=90.83 E-value=4.5 Score=41.26 Aligned_cols=107 Identities=21% Similarity=0.300 Sum_probs=74.8
Q ss_pred ECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEE
Q 006384 133 WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLY 212 (647)
Q Consensus 133 ~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~ 212 (647)
.++.||.--|..+. +.+.+||+.+++-..... +|..-++-+++.++++||..-=. .+..+
T Consensus 54 ~~g~LyESTG~yG~---------S~l~~~d~~tg~~~~~~~--l~~~~FgEGit~~~d~l~qLTWk---------~~~~f 113 (264)
T PF05096_consen 54 DDGTLYESTGLYGQ---------SSLRKVDLETGKVLQSVP--LPPRYFGEGITILGDKLYQLTWK---------EGTGF 113 (264)
T ss_dssp ETTEEEEEECSTTE---------EEEEEEETTTSSEEEEEE---TTT--EEEEEEETTEEEEEESS---------SSEEE
T ss_pred CCCEEEEeCCCCCc---------EEEEEEECCCCcEEEEEE--CCccccceeEEEECCEEEEEEec---------CCeEE
Confidence 47899998887543 678899999998665544 57777888999999999998653 35789
Q ss_pred EEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCe
Q 006384 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (647)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (647)
+||+.+. ..+... +.+..|-+++..+..||+--|.+ .++.+||.+.+
T Consensus 114 ~yd~~tl--~~~~~~-----~y~~EGWGLt~dg~~Li~SDGS~-----------------~L~~~dP~~f~ 160 (264)
T PF05096_consen 114 VYDPNTL--KKIGTF-----PYPGEGWGLTSDGKRLIMSDGSS-----------------RLYFLDPETFK 160 (264)
T ss_dssp EEETTTT--EEEEEE-----E-SSS--EEEECSSCEEEE-SSS-----------------EEEEE-TTT-S
T ss_pred EEccccc--eEEEEE-----ecCCcceEEEcCCCEEEEECCcc-----------------ceEEECCcccc
Confidence 9999864 455444 45568888998888999888843 38899998754
No 92
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=90.80 E-value=27 Score=38.00 Aligned_cols=147 Identities=16% Similarity=0.137 Sum_probs=84.9
Q ss_pred CcEEEEECCCC-----cEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc---eEE-ecc
Q 006384 156 KDFWMLDLKTN-----QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK---WQE-IKP 226 (647)
Q Consensus 156 ~dv~~yD~~t~-----~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~---W~~-v~~ 226 (647)
+.+|.+++... .|..+.. +..-..+.+...++.+|+...... ....|..+++.... |.. +.+
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~---~~~~~~~~v~~~~~~~yi~Tn~~a------~~~~l~~~~l~~~~~~~~~~~l~~ 322 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSP---REDGVEYYVDHHGDRLYILTNDDA------PNGRLVAVDLADPSPAEWWTVLIP 322 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEE---SSSS-EEEEEEETTEEEEEE-TT-------TT-EEEEEETTSTSGGGEEEEEE-
T ss_pred CeEEEEeccccCCCcCCcEEEeC---CCCceEEEEEccCCEEEEeeCCCC------CCcEEEEecccccccccceeEEcC
Confidence 78999999875 7888765 223333344556899999876322 23567888887665 664 333
Q ss_pred CCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCC-CCeEEEeecCCCCCCCceeeEEEEE
Q 006384 227 RFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR-TWEWSKVKKIGMPPGPRAGFSMCVH 305 (647)
Q Consensus 227 ~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~-t~~W~~v~~~g~~P~~R~~~s~~~~ 305 (647)
. .....--.+.+.++.|++.-=.+ ....|.+|++. +..-..+.. |. .+....+.
T Consensus 323 ~-----~~~~~l~~~~~~~~~Lvl~~~~~--------------~~~~l~v~~~~~~~~~~~~~~----p~--~g~v~~~~ 377 (414)
T PF02897_consen 323 E-----DEDVSLEDVSLFKDYLVLSYREN--------------GSSRLRVYDLDDGKESREIPL----PE--AGSVSGVS 377 (414)
T ss_dssp ------SSSEEEEEEEEETTEEEEEEEET--------------TEEEEEEEETT-TEEEEEEES----SS--SSEEEEEE
T ss_pred C-----CCceeEEEEEEECCEEEEEEEEC--------------CccEEEEEECCCCcEEeeecC----Cc--ceEEeccC
Confidence 2 22234455566688888875432 24568899998 433333322 22 22212222
Q ss_pred ----CCe-EEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 306 ----KKR-ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 306 ----~~~-iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
.+. .|.+.+... -..+|.||+.+++.+.+..
T Consensus 378 ~~~~~~~~~~~~ss~~~------------P~~~y~~d~~t~~~~~~k~ 413 (414)
T PF02897_consen 378 GDFDSDELRFSYSSFTT------------PPTVYRYDLATGELTLLKQ 413 (414)
T ss_dssp S-TT-SEEEEEEEETTE------------EEEEEEEETTTTCEEEEEE
T ss_pred CCCCCCEEEEEEeCCCC------------CCEEEEEECCCCCEEEEEe
Confidence 233 334444432 3579999999998877653
No 93
>PRK13684 Ycf48-like protein; Provisional
Probab=90.69 E-value=26 Score=37.30 Aligned_cols=187 Identities=12% Similarity=0.118 Sum_probs=91.2
Q ss_pred CCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcc-eeEEEEECCEEEEEeCCc
Q 006384 66 PSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRS-AHQAVSWKNYLYIFGGEF 144 (647)
Q Consensus 66 P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~-~ha~v~~~~~iyv~GG~~ 144 (647)
|....-..+++.. .++.|++|-. ..+++=.=.-.+|+.+.... |.... ..++...++..|+.|..
T Consensus 43 ~~~~~l~~v~F~d--~~~g~avG~~----------G~il~T~DgG~tW~~~~~~~-~~~~~~l~~v~~~~~~~~~~G~~- 108 (334)
T PRK13684 43 PTEANLLDIAFTD--PNHGWLVGSN----------RTLLETNDGGETWEERSLDL-PEENFRLISISFKGDEGWIVGQP- 108 (334)
T ss_pred CCCCceEEEEEeC--CCcEEEEECC----------CEEEEEcCCCCCceECccCC-cccccceeeeEEcCCcEEEeCCC-
Confidence 3333444455553 4667777741 13333222345899875432 22222 22333335556666521
Q ss_pred CCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEE
Q 006384 145 TSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE 223 (647)
Q Consensus 145 ~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~ 223 (647)
.-+++=.=.-.+|+.+... ...+........+ .+.+|+.|.. ..+++=+-.-.+|+.
T Consensus 109 -----------g~i~~S~DgG~tW~~~~~~-~~~~~~~~~i~~~~~~~~~~~g~~----------G~i~~S~DgG~tW~~ 166 (334)
T PRK13684 109 -----------SLLLHTTDGGKNWTRIPLS-EKLPGSPYLITALGPGTAEMATNV----------GAIYRTTDGGKNWEA 166 (334)
T ss_pred -----------ceEEEECCCCCCCeEccCC-cCCCCCceEEEEECCCcceeeecc----------ceEEEECCCCCCcee
Confidence 1233322223489988642 1112222223333 3456665542 234444334578998
Q ss_pred eccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEE-eCCCCeEEEeecCCCCCCCceeeEE
Q 006384 224 IKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSL-DPRTWEWSKVKKIGMPPGPRAGFSM 302 (647)
Q Consensus 224 v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~y-d~~t~~W~~v~~~g~~P~~R~~~s~ 302 (647)
+... ..-..+.+....+..|+..|..+. ++.. +....+|+.+.. +..+.-+++
T Consensus 167 ~~~~------~~g~~~~i~~~~~g~~v~~g~~G~----------------i~~s~~~gg~tW~~~~~----~~~~~l~~i 220 (334)
T PRK13684 167 LVED------AAGVVRNLRRSPDGKYVAVSSRGN----------------FYSTWEPGQTAWTPHQR----NSSRRLQSM 220 (334)
T ss_pred CcCC------CcceEEEEEECCCCeEEEEeCCce----------------EEEEcCCCCCeEEEeeC----CCcccceee
Confidence 8654 222444555554555555444333 3332 445568998854 344455555
Q ss_pred EEE-CCeEEEecc
Q 006384 303 CVH-KKRALLFGG 314 (647)
Q Consensus 303 ~~~-~~~iyifGG 314 (647)
++. ++.++++|.
T Consensus 221 ~~~~~g~~~~vg~ 233 (334)
T PRK13684 221 GFQPDGNLWMLAR 233 (334)
T ss_pred eEcCCCCEEEEec
Confidence 554 677888874
No 94
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=90.41 E-value=0.063 Score=57.34 Aligned_cols=8 Identities=25% Similarity=0.576 Sum_probs=5.8
Q ss_pred Eeecceec
Q 006384 480 ITLDDLYS 487 (647)
Q Consensus 480 ~tl~D~~~ 487 (647)
+|++|+-.
T Consensus 26 lTi~Dtlk 33 (458)
T PF10446_consen 26 LTINDTLK 33 (458)
T ss_pred ccHHHHHH
Confidence 78888744
No 95
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=90.26 E-value=22 Score=35.87 Aligned_cols=113 Identities=14% Similarity=0.030 Sum_probs=52.4
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEE-EecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCc
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~-~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~ 150 (647)
.+++.|. ++.+|+.++. .+.++.||+.+.+-. .+... ...++++.. ++.+++++....
T Consensus 77 ~~~~~~~-g~~l~~~~~~---------~~~l~~~d~~~~~~~~~~~~~-----~~~~~~~~~~dg~~l~~~~~~~----- 136 (300)
T TIGR03866 77 LFALHPN-GKILYIANED---------DNLVTVIDIETRKVLAEIPVG-----VEPEGMAVSPDGKIVVNTSETT----- 136 (300)
T ss_pred EEEECCC-CCEEEEEcCC---------CCeEEEEECCCCeEEeEeeCC-----CCcceEEECCCCCEEEEEecCC-----
Confidence 3445542 3456665541 136888998875422 22211 111223332 466666654321
Q ss_pred cccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCce
Q 006384 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (647)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W 221 (647)
+.+..||..+..-..... ...+..+.....+++.+++++.. -..+.+||+.+.+.
T Consensus 137 -----~~~~~~d~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~--------~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 137 -----NMAHFIDTKTYEIVDNVL---VDQRPRFAEFTADGKELWVSSEI--------GGTVSVIDVATRKV 191 (300)
T ss_pred -----CeEEEEeCCCCeEEEEEE---cCCCccEEEECCCCCEEEEEcCC--------CCEEEEEEcCccee
Confidence 235567877654322111 11111222222345444444421 24588899887654
No 96
>PRK04043 tolB translocation protein TolB; Provisional
Probab=89.31 E-value=38 Score=37.25 Aligned_cols=193 Identities=13% Similarity=0.153 Sum_probs=103.9
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCc
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R 180 (647)
++|++|+.+.+=+.+.... . ........- +.+|++.-.... ..++|.+|+.+..++++... +.
T Consensus 214 ~Iyv~dl~tg~~~~lt~~~--g-~~~~~~~SPDG~~la~~~~~~g---------~~~Iy~~dl~~g~~~~LT~~--~~-- 277 (419)
T PRK04043 214 TLYKYNLYTGKKEKIASSQ--G-MLVVSDVSKDGSKLLLTMAPKG---------QPDIYLYDTNTKTLTQITNY--PG-- 277 (419)
T ss_pred EEEEEECCCCcEEEEecCC--C-cEEeeEECCCCCEEEEEEccCC---------CcEEEEEECCCCcEEEcccC--CC--
Confidence 7999999988777776421 1 111111222 345555433211 25899999999999988652 21
Q ss_pred ceeEEEE-E-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCC
Q 006384 181 SGHRMVL-Y-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEV 258 (647)
Q Consensus 181 ~~h~~~~-~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~ 258 (647)
....... - +.+||+.-...+ ...||++|+.+...+++.... .........+..|.+.......
T Consensus 278 ~d~~p~~SPDG~~I~F~Sdr~g-------~~~Iy~~dl~~g~~~rlt~~g-------~~~~~~SPDG~~Ia~~~~~~~~- 342 (419)
T PRK04043 278 IDVNGNFVEDDKRIVFVSDRLG-------YPNIFMKKLNSGSVEQVVFHG-------KNNSSVSTYKNYIVYSSRETNN- 342 (419)
T ss_pred ccCccEECCCCCEEEEEECCCC-------CceEEEEECCCCCeEeCccCC-------CcCceECCCCCEEEEEEcCCCc-
Confidence 1111122 1 446766544321 358999999999888776531 1122222224444444322111
Q ss_pred CCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEEC
Q 006384 259 STDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQL 338 (647)
Q Consensus 259 ~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~ 338 (647)
.......+++++|+.+..++.+...+ ....-...-+++.++|-.... ....|+.+++
T Consensus 343 -------~~~~~~~~I~v~d~~~g~~~~LT~~~-----~~~~p~~SPDG~~I~f~~~~~-----------~~~~L~~~~l 399 (419)
T PRK04043 343 -------EFGKNTFNLYLISTNSDYIRRLTANG-----VNQFPRFSSDGGSIMFIKYLG-----------NQSALGIIRL 399 (419)
T ss_pred -------ccCCCCcEEEEEECCCCCeEECCCCC-----CcCCeEECCCCCEEEEEEccC-----------CcEEEEEEec
Confidence 00112357999999999888886531 111111122555555543221 1346999999
Q ss_pred CCCcEEEeEe
Q 006384 339 DNHRWYPLEL 348 (647)
Q Consensus 339 ~t~~W~~l~~ 348 (647)
..+.=..++.
T Consensus 400 ~g~~~~~l~~ 409 (419)
T PRK04043 400 NYNKSFLFPL 409 (419)
T ss_pred CCCeeEEeec
Confidence 8766555554
No 97
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=89.06 E-value=28 Score=35.27 Aligned_cols=229 Identities=12% Similarity=0.123 Sum_probs=94.6
Q ss_pred cceEEEEeccCCCEEEEEcCe-ecCCCcceeeCcEEE-EECCCCeEEEecCCCCCC-------CcceeEEEEECCEEEEE
Q 006384 70 SNCSLNINPLKETELILYGGE-FYNGNKTYVYGDLYR-YDVEKQEWKVISSPNSPP-------PRSAHQAVSWKNYLYIF 140 (647)
Q Consensus 70 ~~~s~~~~~~~~~~lyv~GG~-~~~g~~~~~~ndl~~-yd~~~~~W~~l~s~~~P~-------~R~~ha~v~~~~~iyv~ 140 (647)
.++++-++ +|+||.+=-. +..+.+ .....+|. --...+.|+...-+..|. .-.-|+.+.+++.-|.+
T Consensus 76 HCmSMGv~---~NRLfa~iEtR~~a~~k-m~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~ 151 (367)
T PF12217_consen 76 HCMSMGVV---GNRLFAVIETRTVASNK-MVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAV 151 (367)
T ss_dssp E-B-EEEE---TTEEEEEEEEEETTT---EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEE
T ss_pred eeeeeeee---cceeeEEEeehhhhhhh-hhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeE
Confidence 45667777 8999866543 222221 11112221 114677898544332333 45578899998888888
Q ss_pred eCCcCCCCCccccccCcE--EEEECC----CC-cEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEE
Q 006384 141 GGEFTSPNQERFHHYKDF--WMLDLK----TN-QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYV 213 (647)
Q Consensus 141 GG~~~~~~~~~~~~~~dv--~~yD~~----t~-~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~ 213 (647)
|=.++.... +.+ ..|... .. .=+.++.. .-..-+-.+.-.+++.||+.---... ...-+.+.+
T Consensus 152 GyHnGD~sP------Re~G~~yfs~~~~sp~~~vrr~i~se-y~~~AsEPCvkyY~g~LyLtTRgt~~---~~~GS~L~r 221 (367)
T PF12217_consen 152 GYHNGDVSP------RELGFLYFSDAFASPGVFVRRIIPSE-YERNASEPCVKYYDGVLYLTTRGTLP---TNPGSSLHR 221 (367)
T ss_dssp EEEE-SSSS-------EEEEEEETTTTT-TT--EEEE--GG-G-TTEEEEEEEEETTEEEEEEEES-T---TS---EEEE
T ss_pred EeccCCCCc------ceeeEEEecccccCCcceeeeechhh-hccccccchhhhhCCEEEEEEcCcCC---CCCcceeee
Confidence 844333222 222 222111 11 11222221 11222334555679999997532211 123456777
Q ss_pred EEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCC---CcccCCCCCceeeeEEEE-------eCCCCe
Q 006384 214 FDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVS---TDKNQSEKGIIHSDLWSL-------DPRTWE 283 (647)
Q Consensus 214 yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~---~~~~~~~~~~~~~dv~~y-------d~~t~~ 283 (647)
-+.....|..+.... .......-++..++.||+||--....- ....++-.+.+ .-++.. .+..-.
T Consensus 222 s~d~G~~w~slrfp~----nvHhtnlPFakvgD~l~mFgsERA~~EWE~G~~D~RY~~~y-PRtF~~k~nv~~W~~d~~e 296 (367)
T PF12217_consen 222 SDDNGQNWSSLRFPN----NVHHTNLPFAKVGDVLYMFGSERAENEWEGGEPDNRYRANY-PRTFMLKVNVSDWSLDDVE 296 (367)
T ss_dssp ESSTTSS-EEEE-TT-------SS---EEEETTEEEEEEE-SSTT-SSTT-----SS-B---EEEEEEEETTT---TT--
T ss_pred ecccCCchhhccccc----cccccCCCceeeCCEEEEEeccccccccccCCCcccccccC-CceEEEEeecccCCccceE
Confidence 777778899886541 122233345666999999995322100 00011111111 112222 355567
Q ss_pred EEEeecC---CCCCCCceeeEEEEE-CCeE-EEecceec
Q 006384 284 WSKVKKI---GMPPGPRAGFSMCVH-KKRA-LLFGGVVD 317 (647)
Q Consensus 284 W~~v~~~---g~~P~~R~~~s~~~~-~~~i-yifGG~~~ 317 (647)
|..+... |..-..-.|.+.+++ ++.| |||||..-
T Consensus 297 w~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgED~ 335 (367)
T PF12217_consen 297 WVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGEDF 335 (367)
T ss_dssp -EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEEB-S
T ss_pred EEEeecceeccccccccccceeEEEECCEEEEEecCccc
Confidence 7776542 333344455555555 6766 47888643
No 98
>PRK03629 tolB translocation protein TolB; Provisional
Probab=88.90 E-value=41 Score=37.06 Aligned_cols=168 Identities=10% Similarity=-0.010 Sum_probs=84.9
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCc
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R 180 (647)
..+|++++.+.+-+.+.... ..-.......-+..|++...... ..++|++|+.+....++... +
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~--~~~~~~~~SPDG~~La~~~~~~g---------~~~I~~~d~~tg~~~~lt~~--~--- 286 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFP--RHNGAPAFSPDGSKLAFALSKTG---------SLNLYVMDLASGQIRQVTDG--R--- 286 (429)
T ss_pred cEEEEEECCCCCeEEccCCC--CCcCCeEECCCCCEEEEEEcCCC---------CcEEEEEECCCCCEEEccCC--C---
Confidence 46889999888777665421 11111111111345555432211 24699999999888777542 1
Q ss_pred ceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCC
Q 006384 181 SGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (647)
Q Consensus 181 ~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~ 257 (647)
.......+ +++.++|..... + ...+|.+|+.+..-.++... ..... ..... ++..+++.+....
T Consensus 287 ~~~~~~~wSPDG~~I~f~s~~~-g-----~~~Iy~~d~~~g~~~~lt~~-----~~~~~--~~~~SpDG~~Ia~~~~~~g 353 (429)
T PRK03629 287 SNNTEPTWFPDSQNLAYTSDQA-G-----RPQVYKVNINGGAPQRITWE-----GSQNQ--DADVSSDGKFMVMVSSNGG 353 (429)
T ss_pred CCcCceEECCCCCEEEEEeCCC-C-----CceEEEEECCCCCeEEeecC-----CCCcc--CEEECCCCCEEEEEEccCC
Confidence 11222333 444444433211 1 24789999988777766433 11111 12222 3444444332211
Q ss_pred CCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecce
Q 006384 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGV 315 (647)
Q Consensus 258 ~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~ 315 (647)
...++++|+.+..+..+.... ........-+++.++|.+.
T Consensus 354 -------------~~~I~~~dl~~g~~~~Lt~~~-----~~~~p~~SpDG~~i~~~s~ 393 (429)
T PRK03629 354 -------------QQHIAKQDLATGGVQVLTDTF-----LDETPSIAPNGTMVIYSSS 393 (429)
T ss_pred -------------CceEEEEECCCCCeEEeCCCC-----CCCCceECCCCCEEEEEEc
Confidence 135889999988888775321 0111112236777777664
No 99
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=88.10 E-value=41 Score=38.24 Aligned_cols=122 Identities=16% Similarity=0.181 Sum_probs=64.5
Q ss_pred EEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCC--cEEEcccCCC---C---CCcceeEEEEECCEEEEEecccCC
Q 006384 130 AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--QWEQLNLKGC---P---SPRSGHRMVLYKHKIIVFGGFYDT 201 (647)
Q Consensus 130 ~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~--~W~~~~~~~~---P---~~R~~h~~~~~~~~lyv~GG~~~~ 201 (647)
-++.++.||+... ...|+.+|..+. .|+.-..... + ........++.+++||+...
T Consensus 65 Pvv~~g~vyv~s~------------~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~---- 128 (527)
T TIGR03075 65 PLVVDGVMYVTTS------------YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL---- 128 (527)
T ss_pred CEEECCEEEEECC------------CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC----
Confidence 3566899998653 145889998876 4775432110 1 00112234566788886322
Q ss_pred CCceeeeCcEEEEEcCCCc--eEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeC
Q 006384 202 LREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDP 279 (647)
Q Consensus 202 ~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~ 279 (647)
-..|+.+|..+.+ |+.-..... .......+.++.++.||+-...... .....++.||+
T Consensus 129 ------dg~l~ALDa~TGk~~W~~~~~~~~---~~~~~tssP~v~~g~Vivg~~~~~~-----------~~~G~v~AlD~ 188 (527)
T TIGR03075 129 ------DARLVALDAKTGKVVWSKKNGDYK---AGYTITAAPLVVKGKVITGISGGEF-----------GVRGYVTAYDA 188 (527)
T ss_pred ------CCEEEEEECCCCCEEeeccccccc---ccccccCCcEEECCEEEEeeccccc-----------CCCcEEEEEEC
Confidence 2468999998765 765322100 0111222345567777664321110 12235778887
Q ss_pred CCC--eEEEe
Q 006384 280 RTW--EWSKV 287 (647)
Q Consensus 280 ~t~--~W~~v 287 (647)
.+. .|+.-
T Consensus 189 ~TG~~lW~~~ 198 (527)
T TIGR03075 189 KTGKLVWRRY 198 (527)
T ss_pred CCCceeEecc
Confidence 654 56643
No 100
>PLN00181 protein SPA1-RELATED; Provisional
Probab=88.08 E-value=46 Score=39.84 Aligned_cols=91 Identities=10% Similarity=0.016 Sum_probs=45.8
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceE-EeccCCCCCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ-EIKPRFGSMW 232 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~-~v~~~~~~~~ 232 (647)
..+.+||+.++.....-. ... ..-.+++.. ++.+++.||.+ ..+.+||+.+..-. .+..
T Consensus 555 g~v~lWd~~~~~~~~~~~--~H~-~~V~~l~~~p~~~~~L~Sgs~D---------g~v~iWd~~~~~~~~~~~~------ 616 (793)
T PLN00181 555 GVVQVWDVARSQLVTEMK--EHE-KRVWSIDYSSADPTLLASGSDD---------GSVKLWSINQGVSIGTIKT------ 616 (793)
T ss_pred CeEEEEECCCCeEEEEec--CCC-CCEEEEEEcCCCCCEEEEEcCC---------CEEEEEECCCCcEEEEEec------
Confidence 357788887664322111 111 112223332 45677777753 35778887654321 2211
Q ss_pred CCCceeeeEEE--eCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCC
Q 006384 233 PSPRSGFQFFV--YQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW 282 (647)
Q Consensus 233 P~~R~~~s~~~--~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~ 282 (647)
... ..++.. .++.+++.|+.++. +.+||+.+.
T Consensus 617 ~~~--v~~v~~~~~~g~~latgs~dg~----------------I~iwD~~~~ 650 (793)
T PLN00181 617 KAN--ICCVQFPSESGRSLAFGSADHK----------------VYYYDLRNP 650 (793)
T ss_pred CCC--eEEEEEeCCCCCEEEEEeCCCe----------------EEEEECCCC
Confidence 111 111221 25677888876654 788887653
No 101
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=87.59 E-value=48 Score=36.31 Aligned_cols=174 Identities=16% Similarity=0.223 Sum_probs=87.4
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEec-CCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVIS-SPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFW 159 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~-s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~ 159 (647)
++.++++|+- .. -+-.+|..+..- ++. +...-.-|++ ++...++.|++.||++. .|-
T Consensus 122 d~t~l~s~sD---d~------v~k~~d~s~a~v-~~~l~~htDYVR~g-~~~~~~~hivvtGsYDg-----------~vr 179 (487)
T KOG0310|consen 122 DNTMLVSGSD---DK------VVKYWDLSTAYV-QAELSGHTDYVRCG-DISPANDHIVVTGSYDG-----------KVR 179 (487)
T ss_pred CCeEEEecCC---Cc------eEEEEEcCCcEE-EEEecCCcceeEee-ccccCCCeEEEecCCCc-----------eEE
Confidence 7899999983 21 122234444332 211 1111122322 22334678999999865 366
Q ss_pred EEECCCC-cEEEcccCCCCCCcceeEEEEE-C-CEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCc
Q 006384 160 MLDLKTN-QWEQLNLKGCPSPRSGHRMVLY-K-HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPR 236 (647)
Q Consensus 160 ~yD~~t~-~W~~~~~~~~P~~R~~h~~~~~-~-~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R 236 (647)
.||+.+. .|..--..+.|..+ ++.+ + ..|...|| |.+-++|+.++. +.+..+. ....
T Consensus 180 l~DtR~~~~~v~elnhg~pVe~----vl~lpsgs~iasAgG-----------n~vkVWDl~~G~-qll~~~~----~H~K 239 (487)
T KOG0310|consen 180 LWDTRSLTSRVVELNHGCPVES----VLALPSGSLIASAGG-----------NSVKVWDLTTGG-QLLTSMF----NHNK 239 (487)
T ss_pred EEEeccCCceeEEecCCCceee----EEEcCCCCEEEEcCC-----------CeEEEEEecCCc-eehhhhh----cccc
Confidence 7888777 55443333334332 2333 3 34555566 467777776432 1111110 0111
Q ss_pred eeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEE-ECCeEEEecc
Q 006384 237 SGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV-HKKRALLFGG 314 (647)
Q Consensus 237 ~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~-~~~~iyifGG 314 (647)
.--++... ++.-++-||.+.. +-+||. ..|..+..+.. |.|-. ++++ .++..+++|+
T Consensus 240 tVTcL~l~s~~~rLlS~sLD~~----------------VKVfd~--t~~Kvv~s~~~-~~pvL--siavs~dd~t~viGm 298 (487)
T KOG0310|consen 240 TVTCLRLASDSTRLLSGSLDRH----------------VKVFDT--TNYKVVHSWKY-PGPVL--SIAVSPDDQTVVIGM 298 (487)
T ss_pred eEEEEEeecCCceEeecccccc----------------eEEEEc--cceEEEEeeec-cccee--eEEecCCCceEEEec
Confidence 11122222 5577778888776 678883 34666655422 33332 3333 2778888888
Q ss_pred eec
Q 006384 315 VVD 317 (647)
Q Consensus 315 ~~~ 317 (647)
.++
T Consensus 299 snG 301 (487)
T KOG0310|consen 299 SNG 301 (487)
T ss_pred ccc
Confidence 654
No 102
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=86.97 E-value=46 Score=35.42 Aligned_cols=195 Identities=15% Similarity=0.108 Sum_probs=92.0
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcceeEEEEE---CCEEEEEeCCcCCCCCccccccCcEEE--EECCCCcEEEcccCCC
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFTSPNQERFHHYKDFWM--LDLKTNQWEQLNLKGC 176 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~---~~~iyv~GG~~~~~~~~~~~~~~dv~~--yD~~t~~W~~~~~~~~ 176 (647)
.++.||..+.++..+.... .-...+..++ ++.||+....... ...|.. ++..+.+.+.+.. .
T Consensus 16 ~~~~~d~~~g~l~~~~~~~---~~~~Ps~l~~~~~~~~LY~~~e~~~~--------~g~v~~~~i~~~~g~L~~~~~--~ 82 (345)
T PF10282_consen 16 YVFRFDEETGTLTLVQTVA---EGENPSWLAVSPDGRRLYVVNEGSGD--------SGGVSSYRIDPDTGTLTLLNS--V 82 (345)
T ss_dssp EEEEEETTTTEEEEEEEEE---ESSSECCEEE-TTSSEEEEEETTSST--------TTEEEEEEEETTTTEEEEEEE--E
T ss_pred EEEEEcCCCCCceEeeeec---CCCCCceEEEEeCCCEEEEEEccccC--------CCCEEEEEECCCcceeEEeee--e
Confidence 4556677899998665311 1111122222 5789988654311 134444 4555567877765 3
Q ss_pred CCCcceeEEEEE---CCEEEEEecccCCCCceeeeCcEEEEEcCCC-ceEEec-------cCCCCCCCCCceeeeEEEe-
Q 006384 177 PSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF-KWQEIK-------PRFGSMWPSPRSGFQFFVY- 244 (647)
Q Consensus 177 P~~R~~h~~~~~---~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~-~W~~v~-------~~~~~~~P~~R~~~s~~~~- 244 (647)
+......+.+.+ +..||+. -+. -..+.+|++... .-.... ..+.......-.-|++...
T Consensus 83 ~~~g~~p~~i~~~~~g~~l~va-ny~--------~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p 153 (345)
T PF10282_consen 83 PSGGSSPCHIAVDPDGRFLYVA-NYG--------GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP 153 (345)
T ss_dssp EESSSCEEEEEECTTSSEEEEE-ETT--------TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T
T ss_pred ccCCCCcEEEEEecCCCEEEEE-Ecc--------CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC
Confidence 322222222333 3455553 221 245777777653 222211 0000000122233455444
Q ss_pred -CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCe--EEEeecCCCCCCCceeeEEEEE--CCeEEEecceeccc
Q 006384 245 -QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE--WSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDME 319 (647)
Q Consensus 245 -~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~--W~~v~~~g~~P~~R~~~s~~~~--~~~iyifGG~~~~~ 319 (647)
+..+|+..= . .+.|++|+..... .+..... ..|..-.-..+++. +..+||..-.
T Consensus 154 dg~~v~v~dl-G---------------~D~v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv~~e~---- 212 (345)
T PF10282_consen 154 DGRFVYVPDL-G---------------ADRVYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAYVVNEL---- 212 (345)
T ss_dssp TSSEEEEEET-T---------------TTEEEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEEEEETT----
T ss_pred CCCEEEEEec-C---------------CCEEEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEEEecCC----
Confidence 446776532 1 2347777776554 6553332 11222222344555 3578888643
Q ss_pred cCccccccccCCcEEEEECC--CCcEEEeEec
Q 006384 320 MKGDVIMSLFLNELYGFQLD--NHRWYPLELR 349 (647)
Q Consensus 320 ~~~~~~~~~~~ndl~~yd~~--t~~W~~l~~~ 349 (647)
.+.|.+|++. +..|+.+...
T Consensus 213 ----------s~~v~v~~~~~~~g~~~~~~~~ 234 (345)
T PF10282_consen 213 ----------SNTVSVFDYDPSDGSLTEIQTI 234 (345)
T ss_dssp ----------TTEEEEEEEETTTTEEEEEEEE
T ss_pred ----------CCcEEEEeecccCCceeEEEEe
Confidence 4667777766 6667666553
No 103
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=86.96 E-value=10 Score=38.65 Aligned_cols=172 Identities=16% Similarity=0.184 Sum_probs=91.9
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEE
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYV 213 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~ 213 (647)
.+++|++.|..... ..-+..+..| ...+.....-. +|-+-.|.+.+++++.||..-. -.+.|..
T Consensus 30 ~~~iy~~~~~~~~~----v~ey~~~~~f-~~~~~~~~~~~--Lp~~~~GtG~vVYngslYY~~~---------~s~~Ivk 93 (250)
T PF02191_consen 30 SEKIYVTSGFSGNT----VYEYRNYEDF-LRNGRSSRTYK--LPYPWQGTGHVVYNGSLYYNKY---------NSRNIVK 93 (250)
T ss_pred CCCEEEECccCCCE----EEEEcCHhHH-hhcCCCceEEE--EeceeccCCeEEECCcEEEEec---------CCceEEE
Confidence 35688887754320 1122222222 12222222222 4666777788889999987544 1578999
Q ss_pred EEcCCCceE---EeccCCCC-CCCCCcee---eeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCC----
Q 006384 214 FDLDQFKWQ---EIKPRFGS-MWPSPRSG---FQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW---- 282 (647)
Q Consensus 214 yD~~t~~W~---~v~~~~~~-~~P~~R~~---~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~---- 282 (647)
||+.+..-. .++..... ..|....+ .-+++-.+.|+|+-..... .+. --+-.+|+.+.
T Consensus 94 ydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~---------~g~--ivvskld~~tL~v~~ 162 (250)
T PF02191_consen 94 YDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDN---------NGN--IVVSKLDPETLSVEQ 162 (250)
T ss_pred EECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCC---------CCc--EEEEeeCcccCceEE
Confidence 999988765 33222110 11222222 3344557778888665443 111 22456676554
Q ss_pred eEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 283 EWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 283 ~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
+|..- .+. +....+.++.|.||++-..... ...=.+.||+.+++=..+..
T Consensus 163 tw~T~-----~~k-~~~~naFmvCGvLY~~~s~~~~----------~~~I~yafDt~t~~~~~~~i 212 (250)
T PF02191_consen 163 TWNTS-----YPK-RSAGNAFMVCGVLYATDSYDTR----------DTEIFYAFDTYTGKEEDVSI 212 (250)
T ss_pred EEEec-----cCc-hhhcceeeEeeEEEEEEECCCC----------CcEEEEEEECCCCceeceee
Confidence 45431 122 2223356678999998765431 12336889998776554443
No 104
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=86.11 E-value=40 Score=33.89 Aligned_cols=145 Identities=21% Similarity=0.268 Sum_probs=80.0
Q ss_pred CCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEEC-CEEEEEeCC
Q 006384 65 APSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK-NYLYIFGGE 143 (647)
Q Consensus 65 ~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~-~~iyv~GG~ 143 (647)
.|.|-.+ ++.+.|. .|.|++.||. .-+|+.|+.+++.+..--+ ..-+-|+++.-+ +.-++.|++
T Consensus 112 ~evPeIN-am~ldP~-enSi~~AgGD----------~~~y~~dlE~G~i~r~~rG---HtDYvH~vv~R~~~~qilsG~E 176 (325)
T KOG0649|consen 112 VEVPEIN-AMWLDPS-ENSILFAGGD----------GVIYQVDLEDGRIQREYRG---HTDYVHSVVGRNANGQILSGAE 176 (325)
T ss_pred ccCCccc-eeEeccC-CCcEEEecCC----------eEEEEEEecCCEEEEEEcC---CcceeeeeeecccCcceeecCC
Confidence 3444444 3556665 5899999983 2689999999988765433 234567766643 344566776
Q ss_pred cCCCCCccccccCcEEEEECCCCcEEEcccC-CCCC-Cc--cee--EEEEECCEEEEEecccCCCCceeeeCcEEEEEcC
Q 006384 144 FTSPNQERFHHYKDFWMLDLKTNQWEQLNLK-GCPS-PR--SGH--RMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (647)
Q Consensus 144 ~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~-~~P~-~R--~~h--~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~ 217 (647)
++ .+-++|++|.+-..+-.. ..|. -| .+- .+...+..-.|.||- ..+-.|++.
T Consensus 177 DG-----------tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG----------p~lslwhLr 235 (325)
T KOG0649|consen 177 DG-----------TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG----------PKLSLWHLR 235 (325)
T ss_pred Cc-----------cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC----------CceeEEecc
Confidence 54 366788888876554221 1111 12 222 444556666667663 234455555
Q ss_pred CCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEe
Q 006384 218 QFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYG 252 (647)
Q Consensus 218 t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~G 252 (647)
+..-+.+-+. |-..+-+...++.|++.|
T Consensus 236 sse~t~vfpi-------pa~v~~v~F~~d~vl~~G 263 (325)
T KOG0649|consen 236 SSESTCVFPI-------PARVHLVDFVDDCVLIGG 263 (325)
T ss_pred CCCceEEEec-------ccceeEeeeecceEEEec
Confidence 5554444333 323333444455555554
No 105
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=85.93 E-value=0.55 Score=46.66 Aligned_cols=15 Identities=13% Similarity=0.133 Sum_probs=7.2
Q ss_pred EEEEECCEEEEEecc
Q 006384 184 RMVLYKHKIIVFGGF 198 (647)
Q Consensus 184 ~~~~~~~~lyv~GG~ 198 (647)
.++-....+|-.||.
T Consensus 127 ~C~EC~R~vw~hGGr 141 (314)
T PF06524_consen 127 VCIECERGVWDHGGR 141 (314)
T ss_pred EeeeeecccccCCCe
Confidence 344444455555553
No 106
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=85.55 E-value=45 Score=33.96 Aligned_cols=155 Identities=19% Similarity=0.229 Sum_probs=82.7
Q ss_pred CCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEE---EcccCCC----CCCcce---eEEEEECCE
Q 006384 122 PPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWE---QLNLKGC----PSPRSG---HRMVLYKHK 191 (647)
Q Consensus 122 P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~---~~~~~~~----P~~R~~---h~~~~~~~~ 191 (647)
|-+-.+-..+++++.||---. -.+.+.+||+.++.-. .++..+. |-...+ .-.++-.+-
T Consensus 66 p~~~~GtG~vVYngslYY~~~-----------~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~G 134 (250)
T PF02191_consen 66 PYPWQGTGHVVYNGSLYYNKY-----------NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENG 134 (250)
T ss_pred eceeccCCeEEECCcEEEEec-----------CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCC
Confidence 344455566677777776533 2478999999998654 3333111 111111 223334556
Q ss_pred EEEEecccCCCCceeeeCcEEEEEcCCC----ceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCC
Q 006384 192 IIVFGGFYDTLREVRYYNDLYVFDLDQF----KWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEK 267 (647)
Q Consensus 192 lyv~GG~~~~~~~~~~~~dv~~yD~~t~----~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~ 267 (647)
|+|+-....... .-.|-.+|+.+. .|..- .+.+..+.++ ++-|.||++......
T Consensus 135 LWvIYat~~~~g----~ivvskld~~tL~v~~tw~T~-------~~k~~~~naF-mvCGvLY~~~s~~~~---------- 192 (250)
T PF02191_consen 135 LWVIYATEDNNG----NIVVSKLDPETLSVEQTWNTS-------YPKRSAGNAF-MVCGVLYATDSYDTR---------- 192 (250)
T ss_pred EEEEEecCCCCC----cEEEEeeCcccCceEEEEEec-------cCchhhccee-eEeeEEEEEEECCCC----------
Confidence 777755433210 123445566554 35421 1444455444 445788888776543
Q ss_pred CceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE---CCeEEEec
Q 006384 268 GIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH---KKRALLFG 313 (647)
Q Consensus 268 ~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~---~~~iyifG 313 (647)
...-.+.||+.+++=..+.. ..+.+-..+++.-. +.+||++-
T Consensus 193 --~~~I~yafDt~t~~~~~~~i--~f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 193 --DTEIFYAFDTYTGKEEDVSI--PFPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred --CcEEEEEEECCCCceeceee--eeccccCceEeeeECCCCCeEEEEE
Confidence 12336899998876554432 12333345555555 46788874
No 107
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=85.34 E-value=52 Score=34.48 Aligned_cols=10 Identities=10% Similarity=0.285 Sum_probs=8.0
Q ss_pred CcEEEEECCC
Q 006384 156 KDFWMLDLKT 165 (647)
Q Consensus 156 ~dv~~yD~~t 165 (647)
+.+++||+.+
T Consensus 148 ~~v~v~d~~~ 157 (330)
T PRK11028 148 DRIRLFTLSD 157 (330)
T ss_pred CEEEEEEECC
Confidence 5788999876
No 108
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=85.12 E-value=1.1e+02 Score=38.06 Aligned_cols=159 Identities=10% Similarity=0.106 Sum_probs=85.2
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCC-----------CCcceeEEEEE--CCEEEEEecccC
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCP-----------SPRSGHRMVLY--KHKIIVFGGFYD 200 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P-----------~~R~~h~~~~~--~~~lyv~GG~~~ 200 (647)
++.|||.... .+.|++||+.++....+...+.. ....-+.+++. ++.|||.-..
T Consensus 694 ~g~LyVad~~-----------~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-- 760 (1057)
T PLN02919 694 NEKVYIAMAG-----------QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE-- 760 (1057)
T ss_pred CCeEEEEECC-----------CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC--
Confidence 5788887532 25689999887766544322110 01111233333 3468887542
Q ss_pred CCCceeeeCcEEEEEcCCCceEEeccCCC-------------CCCCCCcee--eeEEEe-CCEEEEEecccCCCCCcccC
Q 006384 201 TLREVRYYNDLYVFDLDQFKWQEIKPRFG-------------SMWPSPRSG--FQFFVY-QDEVFLYGGYSKEVSTDKNQ 264 (647)
Q Consensus 201 ~~~~~~~~~dv~~yD~~t~~W~~v~~~~~-------------~~~P~~R~~--~s~~~~-~~~Iyv~GG~~~~~~~~~~~ 264 (647)
.+.|.+||+.++....+..... +........ .++++. ++.|||....+.
T Consensus 761 -------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~-------- 825 (1057)
T PLN02919 761 -------SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNH-------- 825 (1057)
T ss_pred -------CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCC--------
Confidence 3678999988765433221000 000000010 123333 567888876543
Q ss_pred CCCCceeeeEEEEeCCCCeEEEeecCCCC-------CCCc--eeeEEEEE-CCeEEEecceeccccCccccccccCCcEE
Q 006384 265 SEKGIIHSDLWSLDPRTWEWSKVKKIGMP-------PGPR--AGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELY 334 (647)
Q Consensus 265 ~~~~~~~~dv~~yd~~t~~W~~v~~~g~~-------P~~R--~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~ 334 (647)
.|.+||+.+.....+...|.. .... .-+++++- +++|||.-.. -+.|.
T Consensus 826 --------rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~--------------Nn~Ir 883 (1057)
T PLN02919 826 --------KIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN--------------NSLIR 883 (1057)
T ss_pred --------EEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC--------------CCEEE
Confidence 388999988888777654321 0011 11233443 5778887543 35689
Q ss_pred EEECCCCc
Q 006384 335 GFQLDNHR 342 (647)
Q Consensus 335 ~yd~~t~~ 342 (647)
++|+.+.+
T Consensus 884 vid~~~~~ 891 (1057)
T PLN02919 884 YLDLNKGE 891 (1057)
T ss_pred EEECCCCc
Confidence 99998875
No 109
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=84.76 E-value=45 Score=33.31 Aligned_cols=163 Identities=12% Similarity=0.091 Sum_probs=85.2
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCC--C-CCCcceeEEEEECCEEEEEeCCcCCCCCccccccCc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN--S-PPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKD 157 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~--~-P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~d 157 (647)
++.||+.... .+.++|+.+.+++.+.... . +..+..-.++.-++.||+.--....... .....
T Consensus 51 ~g~l~v~~~~-----------~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~---~~~g~ 116 (246)
T PF08450_consen 51 DGRLYVADSG-----------GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASG---IDPGS 116 (246)
T ss_dssp TSEEEEEETT-----------CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTC---GGSEE
T ss_pred CCEEEEEEcC-----------ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCcccc---ccccc
Confidence 6888887662 3466799999998776531 1 2333333333336788886432221111 00156
Q ss_pred EEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCc--eEEeccCCCCCCC
Q 006384 158 FWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWP 233 (647)
Q Consensus 158 v~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P 233 (647)
+|++++. .+...+... -....++++- ++.||+.-- ..+.|+.|++.... +....... ..+
T Consensus 117 v~~~~~~-~~~~~~~~~----~~~pNGi~~s~dg~~lyv~ds---------~~~~i~~~~~~~~~~~~~~~~~~~--~~~ 180 (246)
T PF08450_consen 117 VYRIDPD-GKVTVVADG----LGFPNGIAFSPDGKTLYVADS---------FNGRIWRFDLDADGGELSNRRVFI--DFP 180 (246)
T ss_dssp EEEEETT-SEEEEEEEE----ESSEEEEEEETTSSEEEEEET---------TTTEEEEEEEETTTCCEEEEEEEE--E-S
T ss_pred eEEECCC-CeEEEEecC----cccccceEECCcchheeeccc---------ccceeEEEeccccccceeeeeeEE--EcC
Confidence 9999998 666655431 1222344444 346777432 24569999886432 43222110 001
Q ss_pred CC-ceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeec
Q 006384 234 SP-RSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (647)
Q Consensus 234 ~~-R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~ 289 (647)
.. ..--++++- ++.|||..-... .|++|++....-..+..
T Consensus 181 ~~~g~pDG~~vD~~G~l~va~~~~~----------------~I~~~~p~G~~~~~i~~ 222 (246)
T PF08450_consen 181 GGPGYPDGLAVDSDGNLWVADWGGG----------------RIVVFDPDGKLLREIEL 222 (246)
T ss_dssp SSSCEEEEEEEBTTS-EEEEEETTT----------------EEEEEETTSCEEEEEE-
T ss_pred CCCcCCCcceEcCCCCEEEEEcCCC----------------EEEEECCCccEEEEEcC
Confidence 11 112234444 788888743222 48999999766666653
No 110
>PRK04043 tolB translocation protein TolB; Provisional
Probab=84.29 E-value=29 Score=38.18 Aligned_cols=153 Identities=11% Similarity=0.044 Sum_probs=82.7
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcceeEEEEECC-EEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (647)
.++|++|+.+++=+.+... + .........-++ +|++.-...+ ..++|.+|+.+..+++++..+.
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~--~-g~~~~~~~SPDG~~la~~~~~~g-------~~~Iy~~dl~~g~~~~LT~~~~----- 277 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASS--Q-GMLVVSDVSKDGSKLLLTMAPKG-------QPDIYLYDTNTKTLTQITNYPG----- 277 (419)
T ss_pred CEEEEEECCCCcEEEEecC--C-CcEEeeEECCCCCEEEEEEccCC-------CcEEEEEECCCCcEEEcccCCC-----
Confidence 4689999988876666431 1 111111222244 5554433211 3589999999999998876521
Q ss_pred CceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecc
Q 006384 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314 (647)
Q Consensus 235 ~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG 314 (647)
.-........+..||+.....+ ..++|++|+.+...+++...+. ... ...-+++.++|-.
T Consensus 278 ~d~~p~~SPDG~~I~F~Sdr~g--------------~~~Iy~~dl~~g~~~rlt~~g~-----~~~-~~SPDG~~Ia~~~ 337 (419)
T PRK04043 278 IDVNGNFVEDDKRIVFVSDRLG--------------YPNIFMKKLNSGSVEQVVFHGK-----NNS-SVSTYKNYIVYSS 337 (419)
T ss_pred ccCccEECCCCCEEEEEECCCC--------------CceEEEEECCCCCeEeCccCCC-----cCc-eECCCCCEEEEEE
Confidence 1111122222456666543321 2479999999888877754321 112 1222444444433
Q ss_pred eeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 315 VVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 315 ~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
...... ......+|+++|+.+..+..|..
T Consensus 338 ~~~~~~-----~~~~~~~I~v~d~~~g~~~~LT~ 366 (419)
T PRK04043 338 RETNNE-----FGKNTFNLYLISTNSDYIRRLTA 366 (419)
T ss_pred cCCCcc-----cCCCCcEEEEEECCCCCeEECCC
Confidence 221100 01113589999999998887765
No 111
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=83.98 E-value=69 Score=34.82 Aligned_cols=147 Identities=20% Similarity=0.217 Sum_probs=84.9
Q ss_pred eCcEEEEECCCC-----eEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCc---EEE-
Q 006384 100 YGDLYRYDVEKQ-----EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ---WEQ- 170 (647)
Q Consensus 100 ~ndl~~yd~~~~-----~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~---W~~- 170 (647)
.+.+|.++.... .|+.+... ..-..+.+...++.+|+....... ...|..+++.+.. |..
T Consensus 251 ~s~v~~~d~~~~~~~~~~~~~l~~~---~~~~~~~v~~~~~~~yi~Tn~~a~--------~~~l~~~~l~~~~~~~~~~~ 319 (414)
T PF02897_consen 251 ESEVYLLDLDDGGSPDAKPKLLSPR---EDGVEYYVDHHGDRLYILTNDDAP--------NGRLVAVDLADPSPAEWWTV 319 (414)
T ss_dssp EEEEEEEECCCTTTSS-SEEEEEES---SSS-EEEEEEETTEEEEEE-TT-T--------T-EEEEEETTSTSGGGEEEE
T ss_pred CCeEEEEeccccCCCcCCcEEEeCC---CCceEEEEEccCCEEEEeeCCCCC--------CcEEEEecccccccccceeE
Confidence 378999999875 89888642 222333444558999998764332 3568888988775 664
Q ss_pred cccCCCCCC-cceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcC-CCceEEeccCCCCCCCCCceeeeEEEe---C
Q 006384 171 LNLKGCPSP-RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLD-QFKWQEIKPRFGSMWPSPRSGFQFFVY---Q 245 (647)
Q Consensus 171 ~~~~~~P~~-R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~-t~~W~~v~~~~~~~~P~~R~~~s~~~~---~ 245 (647)
+.+ +.. ..--.+.+.+++|++.-=.+. ...|.+|++. +..-..++. |..- ....... .
T Consensus 320 l~~---~~~~~~l~~~~~~~~~Lvl~~~~~~-------~~~l~v~~~~~~~~~~~~~~------p~~g-~v~~~~~~~~~ 382 (414)
T PF02897_consen 320 LIP---EDEDVSLEDVSLFKDYLVLSYRENG-------SSRLRVYDLDDGKESREIPL------PEAG-SVSGVSGDFDS 382 (414)
T ss_dssp EE-----SSSEEEEEEEEETTEEEEEEEETT-------EEEEEEEETT-TEEEEEEES------SSSS-EEEEEES-TT-
T ss_pred EcC---CCCceeEEEEEEECCEEEEEEEECC-------ccEEEEEECCCCcEEeeecC------Ccce-EEeccCCCCCC
Confidence 332 223 234455667889888754322 5678999998 333333332 2211 1111111 3
Q ss_pred C-EEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEee
Q 006384 246 D-EVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (647)
Q Consensus 246 ~-~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~ 288 (647)
+ ..|.+.+.. .-..+|.||+.+.+.+.++
T Consensus 383 ~~~~~~~ss~~--------------~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 383 DELRFSYSSFT--------------TPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp SEEEEEEEETT--------------EEEEEEEEETTTTCEEEEE
T ss_pred CEEEEEEeCCC--------------CCCEEEEEECCCCCEEEEE
Confidence 3 344455543 3357999999999888765
No 112
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=83.67 E-value=33 Score=35.15 Aligned_cols=138 Identities=14% Similarity=0.096 Sum_probs=77.1
Q ss_pred EEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCC-cce
Q 006384 105 RYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP-RSG 182 (647)
Q Consensus 105 ~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~-R~~ 182 (647)
++||.++.-+..+.+. .-.-+.+|+. ++.+|+.-= .-+-+-+.|+.+..=+.++. |.+ ..+
T Consensus 172 rLdPa~~~i~vfpaPq---G~gpyGi~atpdGsvwyasl-----------agnaiaridp~~~~aev~p~---P~~~~~g 234 (353)
T COG4257 172 RLDPARNVISVFPAPQ---GGGPYGICATPDGSVWYASL-----------AGNAIARIDPFAGHAEVVPQ---PNALKAG 234 (353)
T ss_pred ecCcccCceeeeccCC---CCCCcceEECCCCcEEEEec-----------cccceEEcccccCCcceecC---CCccccc
Confidence 5567666555554432 2223444554 677777521 11456677888776555543 333 122
Q ss_pred eEEEE--ECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCC
Q 006384 183 HRMVL--YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVST 260 (647)
Q Consensus 183 h~~~~--~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~ 260 (647)
.+-+. --+++++.-- -...++.||+.+..|..-+... ..+|-....+--.+.+++.--
T Consensus 235 sRriwsdpig~~wittw---------g~g~l~rfdPs~~sW~eypLPg----s~arpys~rVD~~grVW~sea------- 294 (353)
T COG4257 235 SRRIWSDPIGRAWITTW---------GTGSLHRFDPSVTSWIEYPLPG----SKARPYSMRVDRHGRVWLSEA------- 294 (353)
T ss_pred ccccccCccCcEEEecc---------CCceeeEeCcccccceeeeCCC----CCCCcceeeeccCCcEEeecc-------
Confidence 22222 2456776511 1357999999999999876541 223333222323556665322
Q ss_pred cccCCCCCceeeeEEEEeCCCCeEEEee
Q 006384 261 DKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (647)
Q Consensus 261 ~~~~~~~~~~~~dv~~yd~~t~~W~~v~ 288 (647)
-.+-+.+||+.+.+.+.+.
T Consensus 295 ---------~agai~rfdpeta~ftv~p 313 (353)
T COG4257 295 ---------DAGAIGRFDPETARFTVLP 313 (353)
T ss_pred ---------ccCceeecCcccceEEEec
Confidence 1234889999999999874
No 113
>PLN00181 protein SPA1-RELATED; Provisional
Probab=83.32 E-value=95 Score=37.18 Aligned_cols=60 Identities=13% Similarity=0.197 Sum_probs=33.0
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEE-EcccCCCCCCcceeEEEEE---CCEEEEEecccCCCCceeeeC
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWE-QLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYN 209 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~-~~~~~~~P~~R~~h~~~~~---~~~lyv~GG~~~~~~~~~~~~ 209 (647)
++.+++.||.. ..+.+||+.+..-. .+.. . ....++.+ ++.++++|+.+ +
T Consensus 587 ~~~~L~Sgs~D-----------g~v~iWd~~~~~~~~~~~~---~---~~v~~v~~~~~~g~~latgs~d---------g 640 (793)
T PLN00181 587 DPTLLASGSDD-----------GSVKLWSINQGVSIGTIKT---K---ANICCVQFPSESGRSLAFGSAD---------H 640 (793)
T ss_pred CCCEEEEEcCC-----------CEEEEEECCCCcEEEEEec---C---CCeEEEEEeCCCCCEEEEEeCC---------C
Confidence 35677777743 34778888765322 1211 1 11122222 46677777742 4
Q ss_pred cEEEEEcCCC
Q 006384 210 DLYVFDLDQF 219 (647)
Q Consensus 210 dv~~yD~~t~ 219 (647)
.+.+||+.+.
T Consensus 641 ~I~iwD~~~~ 650 (793)
T PLN00181 641 KVYYYDLRNP 650 (793)
T ss_pred eEEEEECCCC
Confidence 6888998754
No 114
>PTZ00421 coronin; Provisional
Probab=83.21 E-value=86 Score=35.34 Aligned_cols=64 Identities=8% Similarity=-0.093 Sum_probs=34.4
Q ss_pred CEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEE
Q 006384 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVF 214 (647)
Q Consensus 135 ~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~y 214 (647)
+.+++.||.. ..|.+||+.+..-...-. + ............++.+++.|+.+ ..+.+|
T Consensus 138 ~~iLaSgs~D-----------gtVrIWDl~tg~~~~~l~-~-h~~~V~sla~spdG~lLatgs~D---------g~IrIw 195 (493)
T PTZ00421 138 MNVLASAGAD-----------MVVNVWDVERGKAVEVIK-C-HSDQITSLEWNLDGSLLCTTSKD---------KKLNII 195 (493)
T ss_pred CCEEEEEeCC-----------CEEEEEECCCCeEEEEEc-C-CCCceEEEEEECCCCEEEEecCC---------CEEEEE
Confidence 3577777643 357888988765322111 0 11111111112256777777753 357889
Q ss_pred EcCCCc
Q 006384 215 DLDQFK 220 (647)
Q Consensus 215 D~~t~~ 220 (647)
|+.+.+
T Consensus 196 D~rsg~ 201 (493)
T PTZ00421 196 DPRDGT 201 (493)
T ss_pred ECCCCc
Confidence 988765
No 115
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=83.02 E-value=75 Score=35.71 Aligned_cols=127 Identities=14% Similarity=0.084 Sum_probs=64.7
Q ss_pred EEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCC--cEEEcccCC-C-CCCc-ceeEEEEEC-CEEEEEecccCCCC
Q 006384 130 AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--QWEQLNLKG-C-PSPR-SGHRMVLYK-HKIIVFGGFYDTLR 203 (647)
Q Consensus 130 ~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~--~W~~~~~~~-~-P~~R-~~h~~~~~~-~~lyv~GG~~~~~~ 203 (647)
-++.++.||+.... ..++.+|..+. .|+.-.... . ..+. .....++.+ ++||+...
T Consensus 57 Pvv~~g~vy~~~~~------------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~------ 118 (488)
T cd00216 57 PLVVDGDMYFTTSH------------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF------ 118 (488)
T ss_pred CEEECCEEEEeCCC------------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC------
Confidence 35668999986542 45888998876 487643211 0 0011 111234456 77776432
Q ss_pred ceeeeCcEEEEEcCCCc--eEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCC
Q 006384 204 EVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT 281 (647)
Q Consensus 204 ~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t 281 (647)
-..|+.||..+.+ |+.-..... .+......+.++.++.+| +|....... .......+++||..+
T Consensus 119 ----~g~v~AlD~~TG~~~W~~~~~~~~--~~~~~i~ssP~v~~~~v~-vg~~~~~~~-------~~~~~g~v~alD~~T 184 (488)
T cd00216 119 ----DGRLVALDAETGKQVWKFGNNDQV--PPGYTMTGAPTIVKKLVI-IGSSGAEFF-------ACGVRGALRAYDVET 184 (488)
T ss_pred ----CCeEEEEECCCCCEeeeecCCCCc--CcceEecCCCEEECCEEE-Eeccccccc-------cCCCCcEEEEEECCC
Confidence 2468999988654 876433210 000011223345566555 443222100 001234689999865
Q ss_pred --CeEEEee
Q 006384 282 --WEWSKVK 288 (647)
Q Consensus 282 --~~W~~v~ 288 (647)
..|+.-.
T Consensus 185 G~~~W~~~~ 193 (488)
T cd00216 185 GKLLWRFYT 193 (488)
T ss_pred CceeeEeec
Confidence 4687643
No 116
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=82.60 E-value=62 Score=33.27 Aligned_cols=187 Identities=15% Similarity=0.117 Sum_probs=100.9
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCC
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~ 179 (647)
-+-++|+++..-+..+-+. -.+-.+.-..++ .+.|+..|-. . ++. ++|+.++.-+..+. |..
T Consensus 125 aI~R~dpkt~evt~f~lp~-~~a~~nlet~vfD~~G~lWFt~q~-G--------~yG---rLdPa~~~i~vfpa---PqG 188 (353)
T COG4257 125 AIGRLDPKTLEVTRFPLPL-EHADANLETAVFDPWGNLWFTGQI-G--------AYG---RLDPARNVISVFPA---PQG 188 (353)
T ss_pred eeEEecCcccceEEeeccc-ccCCCcccceeeCCCccEEEeecc-c--------cce---ecCcccCceeeecc---CCC
Confidence 6778899888777665321 111222222334 3567766532 1 111 67787776655543 322
Q ss_pred cceeEEEE-ECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe---CCEEEEEeccc
Q 006384 180 RSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY---QDEVFLYGGYS 255 (647)
Q Consensus 180 R~~h~~~~-~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~---~~~Iyv~GG~~ 255 (647)
-.-.++|+ -++.+|+.-= +-|-+-..|+.+..=..++. |.+....+-.+. .+.+++.--
T Consensus 189 ~gpyGi~atpdGsvwyasl---------agnaiaridp~~~~aev~p~------P~~~~~gsRriwsdpig~~wittw-- 251 (353)
T COG4257 189 GGPYGICATPDGSVWYASL---------AGNAIARIDPFAGHAEVVPQ------PNALKAGSRRIWSDPIGRAWITTW-- 251 (353)
T ss_pred CCCcceEECCCCcEEEEec---------cccceEEcccccCCcceecC------CCcccccccccccCccCcEEEecc--
Confidence 22233443 4777776421 12456677877775444433 222111111111 445555421
Q ss_pred CCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEecceeccccCccccccccCCcEE
Q 006384 256 KEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELY 334 (647)
Q Consensus 256 ~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~ 334 (647)
....+++|||....|..-+-.+.- +|. .++-+- .+++++--- -.+.|.
T Consensus 252 --------------g~g~l~rfdPs~~sW~eypLPgs~--arp-ys~rVD~~grVW~sea--------------~agai~ 300 (353)
T COG4257 252 --------------GTGSLHRFDPSVTSWIEYPLPGSK--ARP-YSMRVDRHGRVWLSEA--------------DAGAIG 300 (353)
T ss_pred --------------CCceeeEeCcccccceeeeCCCCC--CCc-ceeeeccCCcEEeecc--------------ccCcee
Confidence 223589999999999987653322 232 233222 455555211 146799
Q ss_pred EEECCCCcEEEeEecCCC
Q 006384 335 GFQLDNHRWYPLELRKEK 352 (647)
Q Consensus 335 ~yd~~t~~W~~l~~~~~~ 352 (647)
+||+.+.+.+.++...+.
T Consensus 301 rfdpeta~ftv~p~pr~n 318 (353)
T COG4257 301 RFDPETARFTVLPIPRPN 318 (353)
T ss_pred ecCcccceEEEecCCCCC
Confidence 999999999999985544
No 117
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=82.28 E-value=31 Score=30.93 Aligned_cols=87 Identities=20% Similarity=0.167 Sum_probs=58.5
Q ss_pred EEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCC
Q 006384 186 VLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQS 265 (647)
Q Consensus 186 ~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~ 265 (647)
+.++|-||-..-... ...+.+..||+.+.+|+.+..+ ...........++.++|+|-++.-....
T Consensus 2 icinGvly~~a~~~~-----~~~~~IvsFDv~~E~f~~i~~P--~~~~~~~~~~~L~~~~G~L~~v~~~~~~-------- 66 (129)
T PF08268_consen 2 ICINGVLYWLAWSED-----SDNNVIVSFDVRSEKFRFIKLP--EDPYSSDCSSTLIEYKGKLALVSYNDQG-------- 66 (129)
T ss_pred EEECcEEEeEEEECC-----CCCcEEEEEEcCCceEEEEEee--eeeccccCccEEEEeCCeEEEEEecCCC--------
Confidence 456787877665411 1357899999999999988763 1113445566777779998887654432
Q ss_pred CCCceeeeEEEEe-CCCCeEEEeec
Q 006384 266 EKGIIHSDLWSLD-PRTWEWSKVKK 289 (647)
Q Consensus 266 ~~~~~~~dv~~yd-~~t~~W~~v~~ 289 (647)
....-++|+++ .....|++...
T Consensus 67 --~~~~~~iWvLeD~~k~~Wsk~~~ 89 (129)
T PF08268_consen 67 --EPDSIDIWVLEDYEKQEWSKKHI 89 (129)
T ss_pred --CcceEEEEEeeccccceEEEEEE
Confidence 02345799994 66789998754
No 118
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=81.35 E-value=88 Score=34.19 Aligned_cols=68 Identities=12% Similarity=0.133 Sum_probs=36.2
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~ 159 (647)
++.+|++|-. .-+++=.-.-.+|+.++.+.. .+-..+.+..+ ++.+++.|.. ..++
T Consensus 146 ~~~g~~vG~~----------G~il~T~DgG~tW~~~~~~~~-~p~~~~~i~~~~~~~~~ivg~~------------G~v~ 202 (398)
T PLN00033 146 GKEGWIIGKP----------AILLHTSDGGETWERIPLSPK-LPGEPVLIKATGPKSAEMVTDE------------GAIY 202 (398)
T ss_pred CCEEEEEcCc----------eEEEEEcCCCCCceECccccC-CCCCceEEEEECCCceEEEecc------------ceEE
Confidence 5677777541 123332333578998765311 12223334444 3567777742 2355
Q ss_pred EEECCCCcEEEc
Q 006384 160 MLDLKTNQWEQL 171 (647)
Q Consensus 160 ~yD~~t~~W~~~ 171 (647)
+-+-.-.+|+.+
T Consensus 203 ~S~D~G~tW~~~ 214 (398)
T PLN00033 203 VTSNAGRNWKAA 214 (398)
T ss_pred EECCCCCCceEc
Confidence 555455689987
No 119
>PRK02889 tolB translocation protein TolB; Provisional
Probab=81.13 E-value=92 Score=34.24 Aligned_cols=182 Identities=11% Similarity=0.007 Sum_probs=88.6
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEE---CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCC
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCP 177 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~---~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P 177 (647)
..+|++|+.+.+=+.+... +. .. ....+ +..|++...... ..++|.+|+.+....++... .
T Consensus 220 ~~I~~~dl~~g~~~~l~~~--~g--~~-~~~~~SPDG~~la~~~~~~g---------~~~Iy~~d~~~~~~~~lt~~--~ 283 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANF--KG--SN-SAPAWSPDGRTLAVALSRDG---------NSQIYTVNADGSGLRRLTQS--S 283 (427)
T ss_pred cEEEEEECCCCCEEEeecC--CC--Cc-cceEECCCCCEEEEEEccCC---------CceEEEEECCCCCcEECCCC--C
Confidence 3699999988866655431 11 11 12222 345554433211 25799999988876666431 1
Q ss_pred CCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCC
Q 006384 178 SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKE 257 (647)
Q Consensus 178 ~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~ 257 (647)
.........-+++.++|..... + ...+|.++..+.....+.... ...........+..|++......
T Consensus 284 -~~~~~~~wSpDG~~l~f~s~~~-g-----~~~Iy~~~~~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~s~~~g- 350 (427)
T PRK02889 284 -GIDTEPFFSPDGRSIYFTSDRG-G-----APQIYRMPASGGAAQRVTFTG-----SYNTSPRISPDGKLLAYISRVGG- 350 (427)
T ss_pred -CCCcCeEEcCCCCEEEEEecCC-C-----CcEEEEEECCCCceEEEecCC-----CCcCceEECCCCCEEEEEEccCC-
Confidence 1111112222444333432111 1 246888888888777775331 00111111112444444332211
Q ss_pred CCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEE
Q 006384 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQ 337 (647)
Q Consensus 258 ~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd 337 (647)
. ..++++|+.+.....+..... ...-...-+++.++|..... -...+++++
T Consensus 351 -----------~--~~I~v~d~~~g~~~~lt~~~~-----~~~p~~spdg~~l~~~~~~~-----------g~~~l~~~~ 401 (427)
T PRK02889 351 -----------A--FKLYVQDLATGQVTALTDTTR-----DESPSFAPNGRYILYATQQG-----------GRSVLAAVS 401 (427)
T ss_pred -----------c--EEEEEEECCCCCeEEccCCCC-----ccCceECCCCCEEEEEEecC-----------CCEEEEEEE
Confidence 1 258999998877776643210 01111122666666655322 023477877
Q ss_pred CCC
Q 006384 338 LDN 340 (647)
Q Consensus 338 ~~t 340 (647)
+..
T Consensus 402 ~~g 404 (427)
T PRK02889 402 SDG 404 (427)
T ss_pred CCC
Confidence 743
No 120
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=80.76 E-value=30 Score=30.97 Aligned_cols=86 Identities=14% Similarity=0.211 Sum_probs=56.7
Q ss_pred EECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccC-CCCCCcceeEEEEECCEEEEEecccCCCCceeeeCc
Q 006384 132 SWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK-GCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYND 210 (647)
Q Consensus 132 ~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~-~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~d 210 (647)
.++|.||-..-. .. ...+-+.+||+.+.+|+.+..+ ...........+.++++|-++.-..... ...-+
T Consensus 3 cinGvly~~a~~-~~------~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~---~~~~~ 72 (129)
T PF08268_consen 3 CINGVLYWLAWS-ED------SDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE---PDSID 72 (129)
T ss_pred EECcEEEeEEEE-CC------CCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC---cceEE
Confidence 456777776654 11 1246799999999999988763 1134455667788899998876543221 12347
Q ss_pred EEEE-EcCCCceEEeccC
Q 006384 211 LYVF-DLDQFKWQEIKPR 227 (647)
Q Consensus 211 v~~y-D~~t~~W~~v~~~ 227 (647)
+|++ |.....|++....
T Consensus 73 iWvLeD~~k~~Wsk~~~~ 90 (129)
T PF08268_consen 73 IWVLEDYEKQEWSKKHIV 90 (129)
T ss_pred EEEeeccccceEEEEEEE
Confidence 8888 5667889987553
No 121
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=80.45 E-value=95 Score=33.96 Aligned_cols=121 Identities=14% Similarity=0.119 Sum_probs=60.4
Q ss_pred cceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCC--CCCCc-ceeEEEEECCEEEEEeCCcCC
Q 006384 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN--SPPPR-SAHQAVSWKNYLYIFGGEFTS 146 (647)
Q Consensus 70 ~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~--~P~~R-~~ha~v~~~~~iyv~GG~~~~ 146 (647)
.-..+.+.|...++.|++|-. .-+..-+=--.+|.....+. .+..+ ...++...++.+|++|-.
T Consensus 89 ~L~~V~F~~~d~~~GwAVG~~----------G~IL~T~DGG~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~--- 155 (398)
T PLN00033 89 VLLDIAFVPDDPTHGFLLGTR----------QTLLETKDGGKTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGKP--- 155 (398)
T ss_pred ceEEEEeccCCCCEEEEEcCC----------CEEEEEcCCCCCceECccCcccccccccceeeeEEECCEEEEEcCc---
Confidence 445555533224688888862 12333233356898754221 11111 234444557778888531
Q ss_pred CCCccccccCcEEEEECCCCcEEEcccCCC-CCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEe
Q 006384 147 PNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (647)
Q Consensus 147 ~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~-P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (647)
.-+++=.-.-.+|+.+..... |.. .+....+ .+.++++|.. ..+++-+-.-..|+.+
T Consensus 156 ---------G~il~T~DgG~tW~~~~~~~~~p~~--~~~i~~~~~~~~~ivg~~----------G~v~~S~D~G~tW~~~ 214 (398)
T PLN00033 156 ---------AILLHTSDGGETWERIPLSPKLPGE--PVLIKATGPKSAEMVTDE----------GAIYVTSNAGRNWKAA 214 (398)
T ss_pred ---------eEEEEEcCCCCCceECccccCCCCC--ceEEEEECCCceEEEecc----------ceEEEECCCCCCceEc
Confidence 122222223468998865211 222 2333334 4567777742 2344444445689987
No 122
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=80.35 E-value=71 Score=35.47 Aligned_cols=41 Identities=17% Similarity=0.281 Sum_probs=24.1
Q ss_pred cEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEc
Q 006384 167 QWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDL 216 (647)
Q Consensus 167 ~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~ 216 (647)
+-..+.+.++...|...+.|.| ++++ |.+|+.+ .+|.+++.
T Consensus 304 q~qVik~k~~~g~Rv~~tsC~~nrdg~~-iAagc~D--------GSIQ~W~~ 346 (641)
T KOG0772|consen 304 QLQVIKTKPAGGKRVPVTSCAWNRDGKL-IAAGCLD--------GSIQIWDK 346 (641)
T ss_pred heeEEeeccCCCcccCceeeecCCCcch-hhhcccC--------Cceeeeec
Confidence 3444555445567777777877 3455 6666643 34566654
No 123
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=79.44 E-value=91 Score=33.15 Aligned_cols=173 Identities=18% Similarity=0.227 Sum_probs=86.3
Q ss_pred CcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCe--EEEecCCCCC---CCcceeEEEEE-CCEEEEEeC
Q 006384 69 RSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSP---PPRSAHQAVSW-KNYLYIFGG 142 (647)
Q Consensus 69 R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~--W~~l~s~~~P---~~R~~ha~v~~-~~~iyv~GG 142 (647)
-..|.+.+.|. ++.|||..= | .+.+++|+..... .........| .|| |.+..- +..+||..-
T Consensus 144 ~h~H~v~~~pd-g~~v~v~dl----G-----~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR--h~~f~pdg~~~Yv~~e 211 (345)
T PF10282_consen 144 PHPHQVVFSPD-GRFVYVPDL----G-----ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR--HLAFSPDGKYAYVVNE 211 (345)
T ss_dssp TCEEEEEE-TT-SSEEEEEET----T-----TTEEEEEEE-TTS-TEEEEEEEECSTTSSEE--EEEE-TTSSEEEEEET
T ss_pred ccceeEEECCC-CCEEEEEec----C-----CCEEEEEEEeCCCceEEEeeccccccCCCCc--EEEEcCCcCEEEEecC
Confidence 35577777773 356776532 1 2468888887665 5432211111 233 222221 468999875
Q ss_pred CcCCCCCccccccCcEEEEECC--CCcEEEcccCC-CCC---Cc-ceeEEEEE--CCEEEEEecccCCCCceeeeCcEEE
Q 006384 143 EFTSPNQERFHHYKDFWMLDLK--TNQWEQLNLKG-CPS---PR-SGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYV 213 (647)
Q Consensus 143 ~~~~~~~~~~~~~~dv~~yD~~--t~~W~~~~~~~-~P~---~R-~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~ 213 (647)
. .+.|.+|+.. +..++.+.... .|. .. ..+..++. +.+||+--. ..+.|.+
T Consensus 212 ~-----------s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr---------~~~sI~v 271 (345)
T PF10282_consen 212 L-----------SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR---------GSNSISV 271 (345)
T ss_dssp T-----------TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC---------TTTEEEE
T ss_pred C-----------CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec---------cCCEEEE
Confidence 3 2455555544 66666554321 222 22 22333333 457887532 2467888
Q ss_pred EEc--CCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeec
Q 006384 214 FDL--DQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (647)
Q Consensus 214 yD~--~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~ 289 (647)
|++ .+.+.+.+...+.. ...||. +.+...+..|||....+.. -.++..|..+..++.+..
T Consensus 272 f~~d~~~g~l~~~~~~~~~-G~~Pr~-~~~s~~g~~l~Va~~~s~~--------------v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 272 FDLDPATGTLTLVQTVPTG-GKFPRH-FAFSPDGRYLYVANQDSNT--------------VSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp EEECTTTTTEEEEEEEEES-SSSEEE-EEE-TTSSEEEEEETTTTE--------------EEEEEEETTTTEEEEEEE
T ss_pred EEEecCCCceEEEEEEeCC-CCCccE-EEEeCCCCEEEEEecCCCe--------------EEEEEEeCCCCcEEEecc
Confidence 877 45566655444210 022332 1122235666665543322 235566778889988864
No 124
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=78.63 E-value=1 Score=53.45 Aligned_cols=9 Identities=22% Similarity=0.084 Sum_probs=5.1
Q ss_pred HHHHHHHHH
Q 006384 612 SMYWQMAAH 620 (647)
Q Consensus 612 ~~~w~~~~~ 620 (647)
.|-|+.++.
T Consensus 1880 p~imAsiaa 1888 (3015)
T KOG0943|consen 1880 PMIMASIAA 1888 (3015)
T ss_pred hhHHHHHhh
Confidence 456666554
No 125
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=78.25 E-value=49 Score=37.12 Aligned_cols=74 Identities=16% Similarity=0.180 Sum_probs=42.8
Q ss_pred CCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEeccc
Q 006384 178 SPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYS 255 (647)
Q Consensus 178 ~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~ 255 (647)
.|+.+.-+++. .--||+.|- -++||+||++.+.|-..-.. -.+-..+.-+.--+.|+.+||..
T Consensus 132 IP~~GRDm~y~~~scDly~~gs----------g~evYRlNLEqGrfL~P~~~-----~~~~lN~v~in~~hgLla~Gt~~ 196 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLVGS----------GSEVYRLNLEQGRFLNPFET-----DSGELNVVSINEEHGLLACGTED 196 (703)
T ss_pred cCcCCccccccCCCccEEEeec----------CcceEEEEcccccccccccc-----ccccceeeeecCccceEEecccC
Confidence 45555555543 334666543 36899999999988543221 11111111122256789999876
Q ss_pred CCCCCcccCCCCCceeeeEEEEeCCCC
Q 006384 256 KEVSTDKNQSEKGIIHSDLWSLDPRTW 282 (647)
Q Consensus 256 ~~~~~~~~~~~~~~~~~dv~~yd~~t~ 282 (647)
+. |..+|+...
T Consensus 197 g~----------------VEfwDpR~k 207 (703)
T KOG2321|consen 197 GV----------------VEFWDPRDK 207 (703)
T ss_pred ce----------------EEEecchhh
Confidence 65 777887654
No 126
>PRK10115 protease 2; Provisional
Probab=78.24 E-value=1.5e+02 Score=34.97 Aligned_cols=149 Identities=10% Similarity=0.048 Sum_probs=74.6
Q ss_pred CcEEEEECCCCcE--EEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEc--CCCceEEeccCCCC
Q 006384 156 KDFWMLDLKTNQW--EQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDL--DQFKWQEIKPRFGS 230 (647)
Q Consensus 156 ~dv~~yD~~t~~W--~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~--~t~~W~~v~~~~~~ 230 (647)
.+||++++.+..- ..+-. .+........... +++..++..... ..+.++.|+. .+..|..+.+..
T Consensus 199 ~~v~~h~lgt~~~~d~lv~~--e~~~~~~~~~~~s~d~~~l~i~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~-- 268 (686)
T PRK10115 199 YQVWRHTIGTPASQDELVYE--EKDDTFYVSLHKTTSKHYVVIHLASA------TTSEVLLLDAELADAEPFVFLPRR-- 268 (686)
T ss_pred CEEEEEECCCChhHCeEEEe--eCCCCEEEEEEEcCCCCEEEEEEECC------ccccEEEEECcCCCCCceEEEECC--
Confidence 7899999998832 22222 1222333222223 444334444322 2356788873 344444333321
Q ss_pred CCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCC-CCeEEEeecCCCCCCCceeeEEEEECCeE
Q 006384 231 MWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR-TWEWSKVKKIGMPPGPRAGFSMCVHKKRA 309 (647)
Q Consensus 231 ~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~-t~~W~~v~~~g~~P~~R~~~s~~~~~~~i 309 (647)
.... +.....++.+||.--.... ...+..+++. ...|+.+-+.. ..+.--.+.+.++.|
T Consensus 269 --~~~~--~~~~~~~~~ly~~tn~~~~-------------~~~l~~~~~~~~~~~~~l~~~~---~~~~i~~~~~~~~~l 328 (686)
T PRK10115 269 --KDHE--YSLDHYQHRFYLRSNRHGK-------------NFGLYRTRVRDEQQWEELIPPR---ENIMLEGFTLFTDWL 328 (686)
T ss_pred --CCCE--EEEEeCCCEEEEEEcCCCC-------------CceEEEecCCCcccCeEEECCC---CCCEEEEEEEECCEE
Confidence 1222 2333447788887643222 1225666765 57898886421 122233445557777
Q ss_pred EEecceeccccCccccccccCCcEEEEECCCCcEEEe
Q 006384 310 LLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPL 346 (647)
Q Consensus 310 yifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l 346 (647)
++..-... ...++++++.+.....+
T Consensus 329 ~~~~~~~g------------~~~l~~~~~~~~~~~~l 353 (686)
T PRK10115 329 VVEERQRG------------LTSLRQINRKTREVIGI 353 (686)
T ss_pred EEEEEeCC------------EEEEEEEcCCCCceEEe
Confidence 77654322 34488887655444433
No 127
>smart00284 OLF Olfactomedin-like domains.
Probab=77.90 E-value=86 Score=32.00 Aligned_cols=167 Identities=13% Similarity=0.131 Sum_probs=88.4
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEEC----CCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeC
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDL----KTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYN 209 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~----~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~ 209 (647)
.+++|++.|.... .+.++.|.. ....+...-. +|.+-.|.+.+++++.||..-.. .+
T Consensus 34 ~~~~wv~~~~~~~--------~~~v~ey~~~~~f~~~~~~~~~~--Lp~~~~GtG~VVYngslYY~~~~---------s~ 94 (255)
T smart00284 34 KSLYWYMPLNTRV--------LRSVREYSSMSDFQMGKNPTDHP--LPHAGQGTGVVVYNGSLYFNKFN---------SH 94 (255)
T ss_pred CceEEEEccccCC--------CcEEEEecCHHHHhccCCceEEE--CCCccccccEEEECceEEEEecC---------Cc
Confidence 4678887664311 234555532 2333332222 46677788899999999985432 46
Q ss_pred cEEEEEcCCCceEEeccCCC----CCCCCCceee---eEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCC
Q 006384 210 DLYVFDLDQFKWQEIKPRFG----SMWPSPRSGF---QFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW 282 (647)
Q Consensus 210 dv~~yD~~t~~W~~v~~~~~----~~~P~~R~~~---s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~ 282 (647)
.|..||+.+.+-.....++. ...|....++ -+++-.+.|+|+=..... .+.+ -|-.+||.+.
T Consensus 95 ~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~---------~g~i--vvSkLnp~tL 163 (255)
T smart00284 95 DICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQN---------AGKI--VISKLNPATL 163 (255)
T ss_pred cEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCC---------CCCE--EEEeeCcccc
Confidence 79999999987654443321 1222222222 234446667776433222 0111 1446677654
Q ss_pred eEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 283 EWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 283 ~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
.-.+.=..+ -..+....+.++.|.||++-.... .-..-.|.||+.+++
T Consensus 164 ~ve~tW~T~--~~k~sa~naFmvCGvLY~~~s~~~----------~~~~I~yayDt~t~~ 211 (255)
T smart00284 164 TIENTWITT--YNKRSASNAFMICGILYVTRSLGS----------KGEKVFYAYDTNTGK 211 (255)
T ss_pred eEEEEEEcC--CCcccccccEEEeeEEEEEccCCC----------CCcEEEEEEECCCCc
Confidence 333322111 122333356667899999853211 112237889988765
No 128
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=77.49 E-value=1.6e+02 Score=35.06 Aligned_cols=142 Identities=16% Similarity=0.134 Sum_probs=65.7
Q ss_pred EEEECCEEEEEeccc-CCCCceeeeCcEEEEEcCCCc--eEEeccCCCCCCC-CC-----ceee---eEEEe---CCEEE
Q 006384 185 MVLYKHKIIVFGGFY-DTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWP-SP-----RSGF---QFFVY---QDEVF 249 (647)
Q Consensus 185 ~~~~~~~lyv~GG~~-~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P-~~-----R~~~---s~~~~---~~~Iy 249 (647)
-++.++.||+ |+.. +..........|..||..|.+ |..-...+....+ .+ |.+. ....+ .+.+|
T Consensus 312 P~V~~g~VIv-G~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy 390 (764)
T TIGR03074 312 PLVAGTTVVI-GGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVY 390 (764)
T ss_pred CEEECCEEEE-EecccccccccCCCcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEE
Confidence 4566777766 5431 111101124568899998865 7654322111101 11 1111 11122 45666
Q ss_pred EEecccCCCCCcccC--CCCCceeeeEEEEeCCCC--eEEEeecCC-----CCCCCceeeEEEEECCe---EEEecceec
Q 006384 250 LYGGYSKEVSTDKNQ--SEKGIIHSDLWSLDPRTW--EWSKVKKIG-----MPPGPRAGFSMCVHKKR---ALLFGGVVD 317 (647)
Q Consensus 250 v~GG~~~~~~~~~~~--~~~~~~~~dv~~yd~~t~--~W~~v~~~g-----~~P~~R~~~s~~~~~~~---iyifGG~~~ 317 (647)
+--|..... ..... .....+.+.+..+|+.|. .|....... ..|..-.-..+...+++ +++++..+
T Consensus 391 ~ptGn~~pd-~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~- 468 (764)
T TIGR03074 391 LPMGNQTPD-QWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQ- 468 (764)
T ss_pred EeCCCcccc-ccCCccccCcccccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCC-
Confidence 644432210 00011 112356788999998764 687754211 12222222222222442 55565543
Q ss_pred cccCccccccccCCcEEEEECCCCc
Q 006384 318 MEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 318 ~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
..+|+||..+.+
T Consensus 469 -------------G~~~vlDr~tG~ 480 (764)
T TIGR03074 469 -------------GQIYVLDRRTGE 480 (764)
T ss_pred -------------CEEEEEECCCCC
Confidence 359999998874
No 129
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=76.79 E-value=1.3e+02 Score=33.32 Aligned_cols=174 Identities=16% Similarity=0.237 Sum_probs=91.8
Q ss_pred cCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCC
Q 006384 155 YKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232 (647)
Q Consensus 155 ~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~ 232 (647)
..|+|+++.+.++-.++.-.| |.....+-+ ++.|+|.--+...-. ....+|..+....+...+.
T Consensus 106 taDly~v~~e~Ge~kRiTyfG----r~fT~VaG~~~dg~iiV~TD~~tPF~---q~~~lYkv~~dg~~~e~Ln------- 171 (668)
T COG4946 106 TADLYVVPSEDGEAKRITYFG----RRFTRVAGWIPDGEIIVSTDFHTPFS---QWTELYKVNVDGIKTEPLN------- 171 (668)
T ss_pred cccEEEEeCCCCcEEEEEEec----cccceeeccCCCCCEEEEeccCCCcc---cceeeeEEccCCceeeecc-------
Confidence 479999999999999888744 444444444 677877765543211 1223344433333222222
Q ss_pred CCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEe
Q 006384 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLF 312 (647)
Q Consensus 233 P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyif 312 (647)
..-.+..+..+.+.|+|-.... ...=..-++..-..+|+=.....+++++-.+ +..- .+-++++++||.+
T Consensus 172 ---lGpathiv~~dg~ivigRntyd--LP~WK~YkGGtrGklWis~d~g~tFeK~vdl---~~~v--S~PmIV~~RvYFl 241 (668)
T COG4946 172 ---LGPATHIVIKDGIIVIGRNTYD--LPHWKGYKGGTRGKLWISSDGGKTFEKFVDL---DGNV--SSPMIVGERVYFL 241 (668)
T ss_pred ---CCceeeEEEeCCEEEEccCccc--CcccccccCCccceEEEEecCCcceeeeeec---CCCc--CCceEEcceEEEE
Confidence 1122334455668888865443 1111122333445677766666677776543 1110 1224456666665
Q ss_pred cceeccc---------------------------cCccccccccCCcEEEEECCCCcEEEeEecCCC
Q 006384 313 GGVVDME---------------------------MKGDVIMSLFLNELYGFQLDNHRWYPLELRKEK 352 (647)
Q Consensus 313 GG~~~~~---------------------------~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~ 352 (647)
--..+.. ..+..+.-..-.++|.|||++.+-.++....|.
T Consensus 242 sD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl 308 (668)
T COG4946 242 SDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPL 308 (668)
T ss_pred ecccCccceEEeccCCchhhhcCCchhccccccCCCCcEEEEecCCcEEEeCCCcCcceeeecCCcc
Confidence 4211110 001111122245799999999999999886444
No 130
>PRK01742 tolB translocation protein TolB; Provisional
Probab=76.55 E-value=1.2e+02 Score=33.19 Aligned_cols=62 Identities=11% Similarity=0.138 Sum_probs=33.5
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEecc
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~ 226 (647)
..+|++|+.++.-..+.. .+. ........-+++.++++...+. .-++|.+|+.+.....+..
T Consensus 228 ~~i~i~dl~tg~~~~l~~--~~g-~~~~~~wSPDG~~La~~~~~~g------~~~Iy~~d~~~~~~~~lt~ 289 (429)
T PRK01742 228 SQLVVHDLRSGARKVVAS--FRG-HNGAPAFSPDGSRLAFASSKDG------VLNIYVMGANGGTPSQLTS 289 (429)
T ss_pred cEEEEEeCCCCceEEEec--CCC-ccCceeECCCCCEEEEEEecCC------cEEEEEEECCCCCeEeecc
Confidence 468999998877665543 111 1111111224544444332111 1358899998887776654
No 131
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=75.31 E-value=1.7 Score=50.41 Aligned_cols=8 Identities=25% Similarity=0.061 Sum_probs=3.7
Q ss_pred EEEeccee
Q 006384 309 ALLFGGVV 316 (647)
Q Consensus 309 iyifGG~~ 316 (647)
+|++||..
T Consensus 1268 ~~~~G~FH 1275 (1516)
T KOG1832|consen 1268 DYGGGGFH 1275 (1516)
T ss_pred eccccccc
Confidence 44445443
No 132
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.95 E-value=3.9 Score=43.30 Aligned_cols=7 Identities=43% Similarity=0.809 Sum_probs=5.3
Q ss_pred cHHHHHH
Q 006384 603 SLKDFYR 609 (647)
Q Consensus 603 ~l~~f~~ 609 (647)
+.+|||.
T Consensus 363 ~p~d~y~ 369 (514)
T KOG3130|consen 363 TPADIYR 369 (514)
T ss_pred Ccchhhh
Confidence 5678986
No 133
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=74.20 E-value=1.3e+02 Score=32.40 Aligned_cols=186 Identities=12% Similarity=0.075 Sum_probs=91.0
Q ss_pred CcEEEEECCCCe-EEEecCCCCCCCcceeEEEEE---CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCC
Q 006384 101 GDLYRYDVEKQE-WKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC 176 (647)
Q Consensus 101 ndl~~yd~~~~~-W~~l~s~~~P~~R~~ha~v~~---~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~ 176 (647)
+.+..+|..+++ -..++.+. ..|....+ +.++|+.+. . ..+-++|+.+.+- +.. .
T Consensus 16 ~~v~viD~~t~~~~~~i~~~~-----~~h~~~~~s~Dgr~~yv~~r-d-----------g~vsviD~~~~~~--v~~--i 74 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIPTGG-----APHAGLKFSPDGRYLYVANR-D-----------GTVSVIDLATGKV--VAT--I 74 (369)
T ss_dssp TEEEEEETTT-SEEEEEE-ST-----TEEEEEE-TT-SSEEEEEET-T-----------SEEEEEETTSSSE--EEE--E
T ss_pred CEEEEEECCCCeEEEEEcCCC-----CceeEEEecCCCCEEEEEcC-C-----------CeEEEEECCcccE--EEE--E
Confidence 578888988765 34554322 22555544 467999863 1 3588999998873 322 2
Q ss_pred CCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEE-eccCC-CCCCCCCceeeeEEEeCCEEEEEec
Q 006384 177 PSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE-IKPRF-GSMWPSPRSGFQFFVYQDEVFLYGG 253 (647)
Q Consensus 177 P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~-v~~~~-~~~~P~~R~~~s~~~~~~~Iyv~GG 253 (647)
+.....++.++- +++.++.+.+ ..+.+.++|..+.+=.+ ++... ....+.+|...-.+......||+--
T Consensus 75 ~~G~~~~~i~~s~DG~~~~v~n~--------~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l 146 (369)
T PF02239_consen 75 KVGGNPRGIAVSPDGKYVYVANY--------EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL 146 (369)
T ss_dssp E-SSEEEEEEE--TTTEEEEEEE--------ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE
T ss_pred ecCCCcceEEEcCCCCEEEEEec--------CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEE
Confidence 334444444443 5554444443 24789999998865433 22210 0011334443333333455455543
Q ss_pred ccCCCCCcccCCCCCceeeeEEEEeCCCC--eEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCC
Q 006384 254 YSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLN 331 (647)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~n 331 (647)
.. ...+|..|.... ...+.- +..+..|-..+-.+.=|++.+... .|
T Consensus 147 kd---------------~~~I~vVdy~d~~~~~~~~i-----~~g~~~~D~~~dpdgry~~va~~~------------sn 194 (369)
T PF02239_consen 147 KD---------------TGEIWVVDYSDPKNLKVTTI-----KVGRFPHDGGFDPDGRYFLVAANG------------SN 194 (369)
T ss_dssp TT---------------TTEEEEEETTTSSCEEEEEE-----E--TTEEEEEE-TTSSEEEEEEGG------------GT
T ss_pred cc---------------CCeEEEEEeccccccceeee-----cccccccccccCcccceeeecccc------------cc
Confidence 32 235788885443 222211 244556666555433333333332 46
Q ss_pred cEEEEECCCCcEEEeE
Q 006384 332 ELYGFQLDNHRWYPLE 347 (647)
Q Consensus 332 dl~~yd~~t~~W~~l~ 347 (647)
.+-+.|+.+++-..+-
T Consensus 195 ~i~viD~~~~k~v~~i 210 (369)
T PF02239_consen 195 KIAVIDTKTGKLVALI 210 (369)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred eeEEEeeccceEEEEe
Confidence 7888888877655443
No 134
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=74.16 E-value=3.7 Score=47.49 Aligned_cols=10 Identities=20% Similarity=0.125 Sum_probs=4.0
Q ss_pred HHHHHHHHhc
Q 006384 580 ARIEQIRANL 589 (647)
Q Consensus 580 ~~~~~~~~~~ 589 (647)
...+.++.-+
T Consensus 200 ~~~~~i~~yY 209 (622)
T PF02724_consen 200 EYREEIEKYY 209 (622)
T ss_pred HHHHHHHHHH
Confidence 3333444434
No 135
>PTZ00421 coronin; Provisional
Probab=74.13 E-value=1.6e+02 Score=33.23 Aligned_cols=52 Identities=12% Similarity=0.017 Sum_probs=27.5
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEEEEECCCCc
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ 167 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~ 167 (647)
.+.+||+.+.+-...-.. ....-.++... ++.+++.|+.. ..+.+||+.+..
T Consensus 149 tVrIWDl~tg~~~~~l~~---h~~~V~sla~spdG~lLatgs~D-----------g~IrIwD~rsg~ 201 (493)
T PTZ00421 149 VVNVWDVERGKAVEVIKC---HSDQITSLEWNLDGSLLCTTSKD-----------KKLNIIDPRDGT 201 (493)
T ss_pred EEEEEECCCCeEEEEEcC---CCCceEEEEEECCCCEEEEecCC-----------CEEEEEECCCCc
Confidence 577888877643221111 01111122222 56677777643 357889998765
No 136
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=74.09 E-value=1.2e+02 Score=31.67 Aligned_cols=134 Identities=14% Similarity=0.162 Sum_probs=70.1
Q ss_pred eeCcEEEEECCCCeEEEec--CCCCCCCcceeEE-EEE---CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcc
Q 006384 99 VYGDLYRYDVEKQEWKVIS--SPNSPPPRSAHQA-VSW---KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLN 172 (647)
Q Consensus 99 ~~ndl~~yd~~~~~W~~l~--s~~~P~~R~~ha~-v~~---~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~ 172 (647)
-++.+..||..+++-+.+= +..-|..-.+-.+ ..+ ++.||+.-+-. +..--||..|.+++.-+.+.
T Consensus 76 KYSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~DG--------h~nLGvy~ldr~~g~~~~L~ 147 (339)
T PF09910_consen 76 KYSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARADG--------HANLGVYSLDRRTGKAEKLS 147 (339)
T ss_pred ccceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCEEEEEecCC--------cceeeeEEEcccCCceeecc
Confidence 3567999999988643321 1111111112111 122 57787765421 12346899999999988887
Q ss_pred cCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCce--EEeccC--CCCCCCCCceeeeEEEeCCEE
Q 006384 173 LKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW--QEIKPR--FGSMWPSPRSGFQFFVYQDEV 248 (647)
Q Consensus 173 ~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W--~~v~~~--~~~~~P~~R~~~s~~~~~~~I 248 (647)
. .|++. .+.+.+..+|-+ ... ..-.+.+.+||+.+++| ...... ..+.....|....++...+++
T Consensus 148 ~--~ps~K---G~~~~D~a~F~i---~~~---~~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~ 216 (339)
T PF09910_consen 148 S--NPSLK---GTLVHDYACFGI---NNF---HKGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRL 216 (339)
T ss_pred C--CCCcC---ceEeeeeEEEec---ccc---ccCCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeE
Confidence 6 34442 233333333322 111 11267899999999999 333222 111112233344455555665
Q ss_pred EEE
Q 006384 249 FLY 251 (647)
Q Consensus 249 yv~ 251 (647)
|.|
T Consensus 217 faF 219 (339)
T PF09910_consen 217 FAF 219 (339)
T ss_pred EEE
Confidence 555
No 137
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=72.58 E-value=1.5e+02 Score=32.14 Aligned_cols=154 Identities=14% Similarity=0.161 Sum_probs=79.2
Q ss_pred CCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCc--eeeeEE
Q 006384 165 TNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPR--SGFQFF 242 (647)
Q Consensus 165 t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R--~~~s~~ 242 (647)
.+.|+.+.. ..-..--++.++|++|++.- ...++.++.+- .=+++.+.....+..++ .....+
T Consensus 189 ~~~Wt~l~~----~~~~~~DIi~~kGkfYAvD~----------~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLV 253 (373)
T PLN03215 189 GNVLKALKQ----MGYHFSDIIVHKGQTYALDS----------IGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFV 253 (373)
T ss_pred CCeeeEccC----CCceeeEEEEECCEEEEEcC----------CCeEEEEecCC-ceeeecceecccccCCcccCceeEE
Confidence 489999864 12234467889999999832 24566666431 22233221110000111 123355
Q ss_pred EeCCEEEEEecccCCCCCcc---cCCCCCceeeeEEEEeCCCCeEEEeecCCCCC---CCceeeEEEE------ECCeEE
Q 006384 243 VYQDEVFLYGGYSKEVSTDK---NQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPP---GPRAGFSMCV------HKKRAL 310 (647)
Q Consensus 243 ~~~~~Iyv~GG~~~~~~~~~---~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P---~~R~~~s~~~------~~~~iy 310 (647)
...+.|+++..+........ .........-.||.+|....+|.++...|.-- .....+++.. .++.||
T Consensus 254 Es~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIY 333 (373)
T PLN03215 254 ECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIY 333 (373)
T ss_pred EECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEE
Confidence 66788999988643200000 00001123346788898899999998764310 0001111111 134455
Q ss_pred EecceeccccCccccccccCCcEEEEECCCCcEEEeEec
Q 006384 311 LFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELR 349 (647)
Q Consensus 311 ifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~ 349 (647)
+... ...++||+..++=..+...
T Consensus 334 Ftdd----------------~~~~v~~~~dg~~~~~~~~ 356 (373)
T PLN03215 334 FTED----------------TMPKVFKLDNGNGSSIETT 356 (373)
T ss_pred EECC----------------CcceEEECCCCCccceEee
Confidence 5532 3467899988887766653
No 138
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=72.50 E-value=80 Score=34.53 Aligned_cols=42 Identities=14% Similarity=0.041 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCC
Q 006384 209 NDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (647)
Q Consensus 209 ~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~ 257 (647)
+.+-+||+..+.-- ... -.|+.-+++++- .++.+.+|+..+.
T Consensus 198 ~t~k~wdlS~g~LL--lti-----~fp~si~av~lDpae~~~yiGt~~G~ 240 (476)
T KOG0646|consen 198 RTIKLWDLSLGVLL--LTI-----TFPSSIKAVALDPAERVVYIGTEEGK 240 (476)
T ss_pred ceEEEEEeccceee--EEE-----ecCCcceeEEEcccccEEEecCCcce
Confidence 46677787776321 111 234444555555 5556666766554
No 139
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=71.61 E-value=94 Score=35.02 Aligned_cols=74 Identities=14% Similarity=0.123 Sum_probs=45.1
Q ss_pred CCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccC
Q 006384 123 PPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYD 200 (647)
Q Consensus 123 ~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~ 200 (647)
.|+.+..++.. .-.||+.|- -.+||+||+..+.|-..-. ...+-..+..+.--+.|+.+||..
T Consensus 132 IP~~GRDm~y~~~scDly~~gs------------g~evYRlNLEqGrfL~P~~--~~~~~lN~v~in~~hgLla~Gt~~- 196 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLVGS------------GSEVYRLNLEQGRFLNPFE--TDSGELNVVSINEEHGLLACGTED- 196 (703)
T ss_pred cCcCCccccccCCCccEEEeec------------CcceEEEEccccccccccc--cccccceeeeecCccceEEecccC-
Confidence 45555555554 345776653 2689999999999854322 122333333333356789999853
Q ss_pred CCCceeeeCcEEEEEcCCC
Q 006384 201 TLREVRYYNDLYVFDLDQF 219 (647)
Q Consensus 201 ~~~~~~~~~dv~~yD~~t~ 219 (647)
+.|+.+|+.+.
T Consensus 197 --------g~VEfwDpR~k 207 (703)
T KOG2321|consen 197 --------GVVEFWDPRDK 207 (703)
T ss_pred --------ceEEEecchhh
Confidence 46788888654
No 140
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=70.81 E-value=91 Score=34.25 Aligned_cols=128 Identities=16% Similarity=0.270 Sum_probs=65.2
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCC-eEEEecCCCCCCCcceeEEEEE-C-CEEEEEeCCcCCCCCccccccCc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ-EWKVISSPNSPPPRSAHQAVSW-K-NYLYIFGGEFTSPNQERFHHYKD 157 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~-~W~~l~s~~~P~~R~~ha~v~~-~-~~iyv~GG~~~~~~~~~~~~~~d 157 (647)
+++|++.|| |+| .+-.||.... .|..--.-..|.. .++++ + ..|...|| +.
T Consensus 165 ~~hivvtGs--YDg-------~vrl~DtR~~~~~v~elnhg~pVe----~vl~lpsgs~iasAgG-------------n~ 218 (487)
T KOG0310|consen 165 NDHIVVTGS--YDG-------KVRLWDTRSLTSRVVELNHGCPVE----SVLALPSGSLIASAGG-------------NS 218 (487)
T ss_pred CCeEEEecC--CCc-------eEEEEEeccCCceeEEecCCCcee----eEEEcCCCCEEEEcCC-------------Ce
Confidence 478899998 444 4666787766 4442211112221 23333 2 34445555 56
Q ss_pred EEEEECCCCcEEEcccCCCCCCcc-eeE----EEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCC
Q 006384 158 FWMLDLKTNQWEQLNLKGCPSPRS-GHR----MVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSM 231 (647)
Q Consensus 158 v~~yD~~t~~W~~~~~~~~P~~R~-~h~----~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~ 231 (647)
|-++|+.++.= ++..+. +|- +.+. ++.-.+-||.+ ..+-+||+.+ |..+....
T Consensus 219 vkVWDl~~G~q-------ll~~~~~H~KtVTcL~l~s~~~rLlS~sLD---------~~VKVfd~t~--~Kvv~s~~--- 277 (487)
T KOG0310|consen 219 VKVWDLTTGGQ-------LLTSMFNHNKTVTCLRLASDSTRLLSGSLD---------RHVKVFDTTN--YKVVHSWK--- 277 (487)
T ss_pred EEEEEecCCce-------ehhhhhcccceEEEEEeecCCceEeecccc---------cceEEEEccc--eEEEEeee---
Confidence 77777765431 122222 221 1222 34555666653 3577788443 55554441
Q ss_pred CCCCceeeeEEEe-CCEEEEEecccCC
Q 006384 232 WPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (647)
Q Consensus 232 ~P~~R~~~s~~~~-~~~Iyv~GG~~~~ 257 (647)
.|.|... +++. +++-.++|..++.
T Consensus 278 ~~~pvLs--iavs~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 278 YPGPVLS--IAVSPDDQTVVIGMSNGL 302 (487)
T ss_pred cccceee--EEecCCCceEEEecccce
Confidence 1444433 3333 7788888887654
No 141
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=69.28 E-value=1.7e+02 Score=31.41 Aligned_cols=199 Identities=15% Similarity=0.195 Sum_probs=100.1
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCe--EEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDF 158 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~--W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv 158 (647)
++++|+... + ..++.+|+.+.. |+...... .....-....-+++||+-... ..+
T Consensus 68 dg~v~~~~~---~-------G~i~A~d~~~g~~~W~~~~~~~--~~~~~~~~~~~~G~i~~g~~~------------g~~ 123 (370)
T COG1520 68 DGTVYVGTR---D-------GNIFALNPDTGLVKWSYPLLGA--VAQLSGPILGSDGKIYVGSWD------------GKL 123 (370)
T ss_pred CCeEEEecC---C-------CcEEEEeCCCCcEEecccCcCc--ceeccCceEEeCCeEEEeccc------------ceE
Confidence 677887621 1 278999999876 87544320 001111112226776664331 258
Q ss_pred EEEECCCC--cEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCC--CceEEeccCCCCCCCC
Q 006384 159 WMLDLKTN--QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ--FKWQEIKPRFGSMWPS 234 (647)
Q Consensus 159 ~~yD~~t~--~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t--~~W~~v~~~~~~~~P~ 234 (647)
++||..+. .|..-... . ++..-..++.++.+|+.-. .+.++.+|..+ ..|..-...+ ..
T Consensus 124 y~ld~~~G~~~W~~~~~~--~-~~~~~~~v~~~~~v~~~s~----------~g~~~al~~~tG~~~W~~~~~~~----~~ 186 (370)
T COG1520 124 YALDASTGTLVWSRNVGG--S-PYYASPPVVGDGTVYVGTD----------DGHLYALNADTGTLKWTYETPAP----LS 186 (370)
T ss_pred EEEECCCCcEEEEEecCC--C-eEEecCcEEcCcEEEEecC----------CCeEEEEEccCCcEEEEEecCCc----cc
Confidence 89999654 58766542 1 3444444555666665421 25688888875 4587544321 01
Q ss_pred CceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCC--CeEEEeecCCCCCCCceee--EEEEECCeEE
Q 006384 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT--WEWSKVKKIGMPPGPRAGF--SMCVHKKRAL 310 (647)
Q Consensus 235 ~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t--~~W~~v~~~g~~P~~R~~~--s~~~~~~~iy 310 (647)
.+.....++..+.+|+- ..... ..++.+|+.+ ..|+.-... +..+..- ...+..+.||
T Consensus 187 ~~~~~~~~~~~~~vy~~-~~~~~--------------~~~~a~~~~~G~~~w~~~~~~---~~~~~~~~~~~~~~~~~v~ 248 (370)
T COG1520 187 LSIYGSPAIASGTVYVG-SDGYD--------------GILYALNAEDGTLKWSQKVSQ---TIGRTAISTTPAVDGGPVY 248 (370)
T ss_pred cccccCceeecceEEEe-cCCCc--------------ceEEEEEccCCcEeeeeeeec---ccCcccccccccccCceEE
Confidence 11111122335555543 22101 1488898854 468753221 1111111 2334455666
Q ss_pred EecceeccccCccccccccCCcEEEEECCCC--cEEEeE
Q 006384 311 LFGGVVDMEMKGDVIMSLFLNELYGFQLDNH--RWYPLE 347 (647)
Q Consensus 311 ifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~--~W~~l~ 347 (647)
+-||... ......++++|..+. .|..-.
T Consensus 249 v~~~~~~---------~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 249 VDGGVYA---------GSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred ECCcEEE---------EecCCeEEEEEcCCCceEEEEec
Confidence 6665311 112344888887765 476544
No 142
>PRK01742 tolB translocation protein TolB; Provisional
Probab=67.72 E-value=2e+02 Score=31.65 Aligned_cols=61 Identities=13% Similarity=0.076 Sum_probs=33.1
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEccc
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNL 173 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~ 173 (647)
..+|.+|+.+..-+.+.... . ...+.... ++..++++..... .-++|.+|+.+.....+..
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~--g--~~~~~~wSPDG~~La~~~~~~g--------~~~Iy~~d~~~~~~~~lt~ 289 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFR--G--HNGAPAFSPDGSRLAFASSKDG--------VLNIYVMGANGGTPSQLTS 289 (429)
T ss_pred cEEEEEeCCCCceEEEecCC--C--ccCceeECCCCCEEEEEEecCC--------cEEEEEEECCCCCeEeecc
Confidence 36899999887766664321 1 11122222 4443333321111 1369999998888776654
No 143
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=65.74 E-value=4 Score=48.77 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=9.5
Q ss_pred CCCCCcceEEEEeccCCCEEEEEc
Q 006384 65 APSPRSNCSLNINPLKETELILYG 88 (647)
Q Consensus 65 ~P~~R~~~s~~~~~~~~~~lyv~G 88 (647)
+|..-..|.+.... .+...+++|
T Consensus 1087 e~ggepdh~~~a~~-~Ded~i~~g 1109 (3015)
T KOG0943|consen 1087 EPGGEPDHPAMAPD-GDEDFILAG 1109 (3015)
T ss_pred CCCCCCCCcccCCC-CCccccccc
Confidence 34444444444332 123445555
No 144
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=65.59 E-value=2.2e+02 Score=31.50 Aligned_cols=185 Identities=15% Similarity=0.152 Sum_probs=95.8
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeE------------EEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcE
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQ------------AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQW 168 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha------------~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W 168 (647)
.++|.|||.+..-.++... +|.-|.--. .+..++.++++=. -...+++++..+--
T Consensus 287 GdIylydP~td~lekldI~-lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS------------RGkaFi~~~~~~~~ 353 (668)
T COG4946 287 GDIYLYDPETDSLEKLDIG-LPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS------------RGKAFIMRPWDGYS 353 (668)
T ss_pred CcEEEeCCCcCcceeeecC-CccccccccccccCHHHhhhhhccCCCcEEEEEe------------cCcEEEECCCCCee
Confidence 4899999999998887654 233332111 1122333333211 12355665544433
Q ss_pred EEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEE
Q 006384 169 EQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEV 248 (647)
Q Consensus 169 ~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~I 248 (647)
.++... .|....-...++.-.++|-..+ +.+.+||..+..-.++... .++.....+.-+++.
T Consensus 354 iqv~~~----~~VrY~r~~~~~e~~vigt~dg--------D~l~iyd~~~~e~kr~e~~------lg~I~av~vs~dGK~ 415 (668)
T COG4946 354 IQVGKK----GGVRYRRIQVDPEGDVIGTNDG--------DKLGIYDKDGGEVKRIEKD------LGNIEAVKVSPDGKK 415 (668)
T ss_pred EEcCCC----CceEEEEEccCCcceEEeccCC--------ceEEEEecCCceEEEeeCC------ccceEEEEEcCCCcE
Confidence 344332 2333333333444677776543 4688999988877766543 333332222335565
Q ss_pred EEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceee--EEEEE-CCeEEEecceeccccCcccc
Q 006384 249 FLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGF--SMCVH-KKRALLFGGVVDMEMKGDVI 325 (647)
Q Consensus 249 yv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~--s~~~~-~~~iyifGG~~~~~~~~~~~ 325 (647)
.+.+-... .+|++|+.+..-+.+..+ |.+. ..+.+ +.+.+.++ .-.
T Consensus 416 ~vvaNdr~----------------el~vididngnv~~idkS------~~~lItdf~~~~nsr~iAYa-fP~-------- 464 (668)
T COG4946 416 VVVANDRF----------------ELWVIDIDNGNVRLIDKS------EYGLITDFDWHPNSRWIAYA-FPE-------- 464 (668)
T ss_pred EEEEcCce----------------EEEEEEecCCCeeEeccc------ccceeEEEEEcCCceeEEEe-cCc--------
Confidence 66554322 489999888776666432 2221 12223 23333332 111
Q ss_pred ccccCCcEEEEECCCCcEEEeEe
Q 006384 326 MSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 326 ~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
+.+...+.+||+.+.+-..+..
T Consensus 465 -gy~tq~Iklydm~~~Kiy~vTT 486 (668)
T COG4946 465 -GYYTQSIKLYDMDGGKIYDVTT 486 (668)
T ss_pred -ceeeeeEEEEecCCCeEEEecC
Confidence 3345667777777766665554
No 145
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=65.49 E-value=1.5e+02 Score=29.47 Aligned_cols=53 Identities=21% Similarity=0.239 Sum_probs=28.2
Q ss_pred CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe--CCEEEEEecccCC
Q 006384 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKE 257 (647)
Q Consensus 189 ~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~ 257 (647)
++.|.+-||..+ -.+|+-|..+++=-. .-.+..||-++.+ ++-+|+-|..+..
T Consensus 151 ~~~il~s~gagd--------c~iy~tdc~~g~~~~--------a~sghtghilalyswn~~m~~sgsqdkt 205 (350)
T KOG0641|consen 151 GGAILASAGAGD--------CKIYITDCGRGQGFH--------ALSGHTGHILALYSWNGAMFASGSQDKT 205 (350)
T ss_pred CceEEEecCCCc--------ceEEEeecCCCCcce--------eecCCcccEEEEEEecCcEEEccCCCce
Confidence 467888887532 234444544432110 1234455555544 8888888776544
No 146
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=65.43 E-value=1.8e+02 Score=30.47 Aligned_cols=191 Identities=14% Similarity=0.168 Sum_probs=85.3
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~ 159 (647)
++..|++|-. .-+++-.=.-.+|..++... +.|-..+.+.++ .+.++++|.. ..+|
T Consensus 71 ~~~g~ivG~~----------g~ll~T~DgG~tW~~v~l~~-~lpgs~~~i~~l~~~~~~l~~~~------------G~iy 127 (302)
T PF14870_consen 71 GNEGWIVGEP----------GLLLHTTDGGKTWERVPLSS-KLPGSPFGITALGDGSAELAGDR------------GAIY 127 (302)
T ss_dssp TTEEEEEEET----------TEEEEESSTTSS-EE----T-T-SS-EEEEEEEETTEEEEEETT--------------EE
T ss_pred CCceEEEcCC----------ceEEEecCCCCCcEEeecCC-CCCCCeeEEEEcCCCcEEEEcCC------------CcEE
Confidence 6778887641 12333333456899986321 344455555555 5677777643 2344
Q ss_pred EEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCcee
Q 006384 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSG 238 (647)
Q Consensus 160 ~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~ 238 (647)
+=.=.-.+|+.+... ....-...... ++++++++-. + +-+...|+-...|+..... ..|.-
T Consensus 128 ~T~DgG~tW~~~~~~---~~gs~~~~~r~~dG~~vavs~~-G--------~~~~s~~~G~~~w~~~~r~------~~~ri 189 (302)
T PF14870_consen 128 RTTDGGKTWQAVVSE---TSGSINDITRSSDGRYVAVSSR-G--------NFYSSWDPGQTTWQPHNRN------SSRRI 189 (302)
T ss_dssp EESSTTSSEEEEE-S-------EEEEEE-TTS-EEEEETT-S--------SEEEEE-TT-SS-EEEE--------SSS-E
T ss_pred EeCCCCCCeeEcccC---CcceeEeEEECCCCcEEEEECc-c--------cEEEEecCCCccceEEccC------cccee
Confidence 444455689987652 22222222333 5676666543 1 1233567777789987654 33444
Q ss_pred eeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEe--CCCCeEEEeecCCCCCCCceee---EEEEE-CCeEEE
Q 006384 239 FQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLD--PRTWEWSKVKKIGMPPGPRAGF---SMCVH-KKRALL 311 (647)
Q Consensus 239 ~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd--~~t~~W~~v~~~g~~P~~R~~~---s~~~~-~~~iyi 311 (647)
.+|... ++.|+++. ..+. +++-+ -...+|.+... |....++ .++.. ++.+++
T Consensus 190 q~~gf~~~~~lw~~~-~Gg~----------------~~~s~~~~~~~~w~~~~~----~~~~~~~~~ld~a~~~~~~~wa 248 (302)
T PF14870_consen 190 QSMGFSPDGNLWMLA-RGGQ----------------IQFSDDPDDGETWSEPII----PIKTNGYGILDLAYRPPNEIWA 248 (302)
T ss_dssp EEEEE-TTS-EEEEE-TTTE----------------EEEEE-TTEEEEE---B-----TTSS--S-EEEEEESSSS-EEE
T ss_pred hhceecCCCCEEEEe-CCcE----------------EEEccCCCCccccccccC----CcccCceeeEEEEecCCCCEEE
Confidence 444444 67777765 3332 22333 34557877332 3322332 33444 578999
Q ss_pred ecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 312 fGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
.||.. .|++=.=.-++|.+...
T Consensus 249 ~gg~G---------------~l~~S~DgGktW~~~~~ 270 (302)
T PF14870_consen 249 VGGSG---------------TLLVSTDGGKTWQKDRV 270 (302)
T ss_dssp EESTT----------------EEEESSTTSS-EE-GG
T ss_pred EeCCc---------------cEEEeCCCCccceECcc
Confidence 98843 24443334568987765
No 147
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=64.92 E-value=2e+02 Score=31.46 Aligned_cols=59 Identities=14% Similarity=0.212 Sum_probs=34.2
Q ss_pred cEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccC
Q 006384 157 DFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (647)
Q Consensus 157 dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (647)
.|.+||+.... .++....+... .-..+.+ .+...+++|. .-.||.|+-.+..|+.+...
T Consensus 412 ~V~lwDLRKl~--n~kt~~l~~~~-~v~s~~fD~SGt~L~~~g~---------~l~Vy~~~k~~k~W~~~~~~ 472 (506)
T KOG0289|consen 412 SVKLWDLRKLK--NFKTIQLDEKK-EVNSLSFDQSGTYLGIAGS---------DLQVYICKKKTKSWTEIKEL 472 (506)
T ss_pred eEEEEEehhhc--ccceeeccccc-cceeEEEcCCCCeEEeecc---------eeEEEEEecccccceeeehh
Confidence 38889987654 33331122221 2233333 4566666663 12467778889999999776
No 148
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=62.20 E-value=1.8 Score=43.07 Aligned_cols=7 Identities=29% Similarity=0.838 Sum_probs=3.1
Q ss_pred CCEEEEE
Q 006384 245 QDEVFLY 251 (647)
Q Consensus 245 ~~~Iyv~ 251 (647)
++.+|+|
T Consensus 57 ~g~~yLy 63 (303)
T KOG3064|consen 57 NGVLYLY 63 (303)
T ss_pred CCEEEEE
Confidence 4444444
No 149
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=62.07 E-value=2.1e+02 Score=30.02 Aligned_cols=186 Identities=15% Similarity=0.130 Sum_probs=81.0
Q ss_pred CCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCC-cc-eeEEEEECCEEEEEeCC
Q 006384 66 PSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPP-RS-AHQAVSWKNYLYIFGGE 143 (647)
Q Consensus 66 P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~-R~-~ha~v~~~~~iyv~GG~ 143 (647)
|....-..+.+.. .++-|++|-. ..+++=.=--.+|..+.... +.+ .. .+++...++..||.|-.
T Consensus 14 ~t~~~l~dV~F~d--~~~G~~VG~~----------g~il~T~DGG~tW~~~~~~~-~~~~~~~l~~I~f~~~~g~ivG~~ 80 (302)
T PF14870_consen 14 PTDKPLLDVAFVD--PNHGWAVGAY----------GTILKTTDGGKTWQPVSLDL-DNPFDYHLNSISFDGNEGWIVGEP 80 (302)
T ss_dssp S-SS-EEEEEESS--SS-EEEEETT----------TEEEEESSTTSS-EE------S-----EEEEEEEETTEEEEEEET
T ss_pred CCCCceEEEEEec--CCEEEEEecC----------CEEEEECCCCccccccccCC-CccceeeEEEEEecCCceEEEcCC
Confidence 3334445555553 5788888752 23333222335899876432 222 22 33444457889988742
Q ss_pred cCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEE-ECCEEEEEecccCCCCceeeeCcEEEEEcCCCceE
Q 006384 144 FTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ 222 (647)
Q Consensus 144 ~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~-~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~ 222 (647)
.-+++-.=.-.+|++++.. .+.+...+.... -.+.++++|.. ..+|+=.=.-..|+
T Consensus 81 ------------g~ll~T~DgG~tW~~v~l~-~~lpgs~~~i~~l~~~~~~l~~~~----------G~iy~T~DgG~tW~ 137 (302)
T PF14870_consen 81 ------------GLLLHTTDGGKTWERVPLS-SKLPGSPFGITALGDGSAELAGDR----------GAIYRTTDGGKTWQ 137 (302)
T ss_dssp ------------TEEEEESSTTSS-EE-----TT-SS-EEEEEEEETTEEEEEETT------------EEEESSTTSSEE
T ss_pred ------------ceEEEecCCCCCcEEeecC-CCCCCCeeEEEEcCCCcEEEEcCC----------CcEEEeCCCCCCee
Confidence 1233333345689998742 133444444444 36677777642 23443333456899
Q ss_pred EeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeE
Q 006384 223 EIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFS 301 (647)
Q Consensus 223 ~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s 301 (647)
.+... .. ..-..+... ++.+++++.. +. + +...++....|..... +..|.-.+
T Consensus 138 ~~~~~-----~~-gs~~~~~r~~dG~~vavs~~-G~------------~---~~s~~~G~~~w~~~~r----~~~~riq~ 191 (302)
T PF14870_consen 138 AVVSE-----TS-GSINDITRSSDGRYVAVSSR-GN------------F---YSSWDPGQTTWQPHNR----NSSRRIQS 191 (302)
T ss_dssp EEE-S----------EEEEEE-TTS-EEEEETT-SS------------E---EEEE-TT-SS-EEEE------SSS-EEE
T ss_pred EcccC-----Cc-ceeEeEEECCCCcEEEEECc-cc------------E---EEEecCCCccceEEcc----Cccceehh
Confidence 88654 22 222223333 5565555543 33 1 3356888888998865 35566666
Q ss_pred EEEE-CCeEEEec
Q 006384 302 MCVH-KKRALLFG 313 (647)
Q Consensus 302 ~~~~-~~~iyifG 313 (647)
|.+. ++.|+++.
T Consensus 192 ~gf~~~~~lw~~~ 204 (302)
T PF14870_consen 192 MGFSPDGNLWMLA 204 (302)
T ss_dssp EEE-TTS-EEEEE
T ss_pred ceecCCCCEEEEe
Confidence 6665 45665543
No 150
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=61.30 E-value=2.4e+02 Score=30.55 Aligned_cols=209 Identities=16% Similarity=0.225 Sum_probs=92.1
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEE-eCCcCCCCCccccccCcEE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIF-GGEFTSPNQERFHHYKDFW 159 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~-GG~~~~~~~~~~~~~~dv~ 159 (647)
++.-+||+|. .++. ..+|.+|+.+.+-.+++.... ....+..++.-+..||-+ .+ +.|+
T Consensus 46 dG~kllF~s~-~dg~-----~nly~lDL~t~~i~QLTdg~g-~~~~g~~~s~~~~~~~Yv~~~-------------~~l~ 105 (386)
T PF14583_consen 46 DGRKLLFASD-FDGN-----RNLYLLDLATGEITQLTDGPG-DNTFGGFLSPDDRALYYVKNG-------------RSLR 105 (386)
T ss_dssp TS-EEEEEE--TTSS------EEEEEETTT-EEEE---SS--B-TTT-EE-TTSSEEEEEETT-------------TEEE
T ss_pred CCCEEEEEec-cCCC-----cceEEEEcccCEEEECccCCC-CCccceEEecCCCeEEEEECC-------------CeEE
Confidence 5667777775 3332 478999999999999987531 223232222224555434 33 4689
Q ss_pred EEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEeccc----C-CCC---------ceeeeCcEEEEEcCCCceEE
Q 006384 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFY----D-TLR---------EVRYYNDLYVFDLDQFKWQE 223 (647)
Q Consensus 160 ~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~----~-~~~---------~~~~~~dv~~yD~~t~~W~~ 223 (647)
.+|+.|.+=+.+-. .|..-.+....+. ++..++ |=.. . ... ..+....+...|+.+.+.+.
T Consensus 106 ~vdL~T~e~~~vy~--~p~~~~g~gt~v~n~d~t~~~-g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~ 182 (386)
T PF14583_consen 106 RVDLDTLEERVVYE--VPDDWKGYGTWVANSDCTKLV-GIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKV 182 (386)
T ss_dssp EEETTT--EEEEEE----TTEEEEEEEEE-TTSSEEE-EEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEE
T ss_pred EEECCcCcEEEEEE--CCcccccccceeeCCCccEEE-EEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeE
Confidence 99999887655554 3444443333333 233322 1110 0 000 01245677888888888777
Q ss_pred eccCCCCCCCCCceeeeEEEeCCEEEEE---ecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceee
Q 006384 224 IKPRFGSMWPSPRSGFQFFVYQDEVFLY---GGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGF 300 (647)
Q Consensus 224 v~~~~~~~~P~~R~~~s~~~~~~~Iyv~---GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~ 300 (647)
+-.. ..-.....+...+..+++| |... .+-.-||..+.......++... .+.-..+|
T Consensus 183 v~~~-----~~wlgH~~fsP~dp~li~fCHEGpw~-------------~Vd~RiW~i~~dg~~~~~v~~~--~~~e~~gH 242 (386)
T PF14583_consen 183 VFED-----TDWLGHVQFSPTDPTLIMFCHEGPWD-------------LVDQRIWTINTDGSNVKKVHRR--MEGESVGH 242 (386)
T ss_dssp EEEE-----SS-EEEEEEETTEEEEEEEEE-S-TT-------------TSS-SEEEEETTS---EESS-----TTEEEEE
T ss_pred EEec-----CccccCcccCCCCCCEEEEeccCCcc-------------eeceEEEEEEcCCCcceeeecC--CCCccccc
Confidence 6544 1111222233336667777 3332 2233689999877766666432 23334445
Q ss_pred EEEEECCeEEEecceeccccCccccccccCCcEEEEECCCC
Q 006384 301 SMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (647)
Q Consensus 301 s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (647)
=.-+.++..+.+=+..... .---|..||+.+.
T Consensus 243 Efw~~DG~~i~y~~~~~~~---------~~~~i~~~d~~t~ 274 (386)
T PF14583_consen 243 EFWVPDGSTIWYDSYTPGG---------QDFWIAGYDPDTG 274 (386)
T ss_dssp EEE-TTSS-EEEEEEETTT-----------EEEEEE-TTT-
T ss_pred ccccCCCCEEEEEeecCCC---------CceEEEeeCCCCC
Confidence 4444455544443332210 0112677777764
No 151
>PRK10115 protease 2; Provisional
Probab=60.13 E-value=3.5e+02 Score=31.94 Aligned_cols=149 Identities=13% Similarity=0.113 Sum_probs=78.0
Q ss_pred CcEEEEEC--CCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcC-CCceEEeccCCCCCC
Q 006384 156 KDFWMLDL--KTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLD-QFKWQEIKPRFGSMW 232 (647)
Q Consensus 156 ~dv~~yD~--~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~-t~~W~~v~~~~~~~~ 232 (647)
+.++.|+. .+..|..+.. .+. .........++.+|+.--... ....|...++. ...|+.+-+.
T Consensus 247 ~~~~l~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~ly~~tn~~~------~~~~l~~~~~~~~~~~~~l~~~----- 312 (686)
T PRK10115 247 SEVLLLDAELADAEPFVFLP--RRK-DHEYSLDHYQHRFYLRSNRHG------KNFGLYRTRVRDEQQWEELIPP----- 312 (686)
T ss_pred ccEEEEECcCCCCCceEEEE--CCC-CCEEEEEeCCCEEEEEEcCCC------CCceEEEecCCCcccCeEEECC-----
Confidence 57888883 3344433322 111 222233455788888754321 12336666766 5789887654
Q ss_pred CCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEE---EC-Ce
Q 006384 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV---HK-KR 308 (647)
Q Consensus 233 P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~---~~-~~ 308 (647)
...+.--.+.+.++.|++..-..+ ...++++++.+.....+.. +.+.....+.. .+ +.
T Consensus 313 ~~~~~i~~~~~~~~~l~~~~~~~g--------------~~~l~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~ 374 (686)
T PRK10115 313 RENIMLEGFTLFTDWLVVEERQRG--------------LTSLRQINRKTREVIGIAF----DDPAYVTWIAYNPEPETSR 374 (686)
T ss_pred CCCCEEEEEEEECCEEEEEEEeCC--------------EEEEEEEcCCCCceEEecC----CCCceEeeecccCCCCCce
Confidence 112222344555787777754332 2347888876555554431 12222211111 11 23
Q ss_pred EE-EecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 309 AL-LFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 309 iy-ifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
++ .+.+. ..-..+|.||+.+.+|+.+..
T Consensus 375 ~~~~~ss~------------~~P~~~y~~d~~~~~~~~l~~ 403 (686)
T PRK10115 375 LRYGYSSM------------TTPDTLFELDMDTGERRVLKQ 403 (686)
T ss_pred EEEEEecC------------CCCCEEEEEECCCCcEEEEEe
Confidence 32 23322 235789999999999888775
No 152
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=59.90 E-value=2.6e+02 Score=30.32 Aligned_cols=101 Identities=12% Similarity=0.122 Sum_probs=57.4
Q ss_pred CCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccC--CCCC-Cc--ceeE
Q 006384 110 KQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK--GCPS-PR--SGHR 184 (647)
Q Consensus 110 ~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~--~~P~-~R--~~h~ 184 (647)
.+.|..+.. ..-..-.++.++|++|++.- ...++.++..- .-.++.+. ..+. .+ ....
T Consensus 189 ~~~Wt~l~~----~~~~~~DIi~~kGkfYAvD~------------~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~y 251 (373)
T PLN03215 189 GNVLKALKQ----MGYHFSDIIVHKGQTYALDS------------IGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRR 251 (373)
T ss_pred CCeeeEccC----CCceeeEEEEECCEEEEEcC------------CCeEEEEecCC-ceeeecceecccccCCcccCcee
Confidence 489998863 22335677888999999832 23466666321 11222210 0010 11 1233
Q ss_pred EEEECCEEEEEecccCCCCc----------eeeeCcEEEEEcCCCceEEeccC
Q 006384 185 MVLYKHKIIVFGGFYDTLRE----------VRYYNDLYVFDLDQFKWQEIKPR 227 (647)
Q Consensus 185 ~~~~~~~lyv~GG~~~~~~~----------~~~~~dv~~yD~~t~~W~~v~~~ 227 (647)
.|...+.|+++..+...... ....-.|+.+|....+|.++...
T Consensus 252 LVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sL 304 (373)
T PLN03215 252 FVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTL 304 (373)
T ss_pred EEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEeccc
Confidence 56677889999886432110 11223566778888999999887
No 153
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=59.87 E-value=5 Score=46.76 Aligned_cols=11 Identities=0% Similarity=0.220 Sum_probs=5.7
Q ss_pred CcEEEEECCCC
Q 006384 331 NELYGFQLDNH 341 (647)
Q Consensus 331 ndl~~yd~~t~ 341 (647)
++..+||+.|+
T Consensus 1206 d~a~~YDvqT~ 1216 (1516)
T KOG1832|consen 1206 DDALLYDVQTC 1216 (1516)
T ss_pred cceEEEecccC
Confidence 44555555543
No 154
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=59.63 E-value=2.1e+02 Score=29.14 Aligned_cols=186 Identities=16% Similarity=0.145 Sum_probs=90.6
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCC
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~ 178 (647)
..+-.||+.++.=..+.+ .-.++...+++.+ .++-...||..+. +-++|+..-...+.-. .+.
T Consensus 61 qhvRlyD~~S~np~Pv~t--~e~h~kNVtaVgF~~dgrWMyTgseDgt-----------~kIWdlR~~~~qR~~~--~~s 125 (311)
T KOG0315|consen 61 QHVRLYDLNSNNPNPVAT--FEGHTKNVTAVGFQCDGRWMYTGSEDGT-----------VKIWDLRSLSCQRNYQ--HNS 125 (311)
T ss_pred CeeEEEEccCCCCCceeE--EeccCCceEEEEEeecCeEEEecCCCce-----------EEEEeccCcccchhcc--CCC
Confidence 467788887653211111 1123334445554 5777777876543 4566766643333322 122
Q ss_pred CcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCC
Q 006384 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEV 258 (647)
Q Consensus 179 ~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~ 258 (647)
|.. ..+...+.-=+|-|-. ...++++|+..+.......+. ..-+--++++..+.-++.++.+..
T Consensus 126 pVn--~vvlhpnQteLis~dq--------sg~irvWDl~~~~c~~~liPe-----~~~~i~sl~v~~dgsml~a~nnkG- 189 (311)
T KOG0315|consen 126 PVN--TVVLHPNQTELISGDQ--------SGNIRVWDLGENSCTHELIPE-----DDTSIQSLTVMPDGSMLAAANNKG- 189 (311)
T ss_pred Ccc--eEEecCCcceEEeecC--------CCcEEEEEccCCccccccCCC-----CCcceeeEEEcCCCcEEEEecCCc-
Confidence 221 2344455544444422 356999999988766543221 112223445554545555554433
Q ss_pred CCcccCCCCCceeeeEEEEeCCCCe-EEEeecCCCCCCCceeeEE-EEE--CCeEEEecceeccccCccccccccCCcEE
Q 006384 259 STDKNQSEKGIIHSDLWSLDPRTWE-WSKVKKIGMPPGPRAGFSM-CVH--KKRALLFGGVVDMEMKGDVIMSLFLNELY 334 (647)
Q Consensus 259 ~~~~~~~~~~~~~~dv~~yd~~t~~-W~~v~~~g~~P~~R~~~s~-~~~--~~~iyifGG~~~~~~~~~~~~~~~~ndl~ 334 (647)
.+|++++.+.. =+.+.+.-. -..+.+|.. |.+ +++.+..-+. -..++
T Consensus 190 --------------~cyvW~l~~~~~~s~l~P~~k-~~ah~~~il~C~lSPd~k~lat~ss--------------dktv~ 240 (311)
T KOG0315|consen 190 --------------NCYVWRLLNHQTASELEPVHK-FQAHNGHILRCLLSPDVKYLATCSS--------------DKTVK 240 (311)
T ss_pred --------------cEEEEEccCCCccccceEhhh-eecccceEEEEEECCCCcEEEeecC--------------CceEE
Confidence 26666654321 122222111 123445543 333 4555554443 24588
Q ss_pred EEECCCCcEEEeEe
Q 006384 335 GFQLDNHRWYPLEL 348 (647)
Q Consensus 335 ~yd~~t~~W~~l~~ 348 (647)
+|++++. .++..
T Consensus 241 iwn~~~~--~kle~ 252 (311)
T KOG0315|consen 241 IWNTDDF--FKLEL 252 (311)
T ss_pred EEecCCc--eeeEE
Confidence 8888876 44443
No 155
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=58.58 E-value=3e+02 Score=30.78 Aligned_cols=102 Identities=14% Similarity=0.160 Sum_probs=53.3
Q ss_pred cceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCC-----eEEEecCCCCCCCcceeEEEE-----ECCEEEE
Q 006384 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ-----EWKVISSPNSPPPRSAHQAVS-----WKNYLYI 139 (647)
Q Consensus 70 ~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~-----~W~~l~s~~~P~~R~~ha~v~-----~~~~iyv 139 (647)
.-.++++.| .+-=|+.||. -.+|.+||+... ..+.|. |--.|+.-. .++.|+|
T Consensus 169 ~Vsal~~Dp--~GaR~~sGs~---------Dy~v~~wDf~gMdas~~~fr~l~------P~E~h~i~sl~ys~Tg~~iLv 231 (641)
T KOG0772|consen 169 IVSALAVDP--SGARFVSGSL---------DYTVKFWDFQGMDASMRSFRQLQ------PCETHQINSLQYSVTGDQILV 231 (641)
T ss_pred EEEEeeecC--CCceeeeccc---------cceEEEEecccccccchhhhccC------cccccccceeeecCCCCeEEE
Confidence 334455555 4666777774 235666776543 233332 233343322 3788888
Q ss_pred EeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCC----CCCcceeEEEEE-------CCEEEEEecccC
Q 006384 140 FGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC----PSPRSGHRMVLY-------KHKIIVFGGFYD 200 (647)
Q Consensus 140 ~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~----P~~R~~h~~~~~-------~~~lyv~GG~~~ 200 (647)
+-|. ...-+||-.-..|....-.-+ -..--+|.+.+. +...|+.-+.++
T Consensus 232 vsg~------------aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dg 291 (641)
T KOG0772|consen 232 VSGS------------AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDG 291 (641)
T ss_pred EecC------------cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCC
Confidence 8874 334567777777766543111 122345655442 234666666544
No 156
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=58.55 E-value=2.4e+02 Score=29.50 Aligned_cols=104 Identities=16% Similarity=0.176 Sum_probs=57.0
Q ss_pred ccCcEEEEECCCCcEEEcccCCCCCCcceeE--E-EE---ECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccC
Q 006384 154 HYKDFWMLDLKTNQWEQLNLKGCPSPRSGHR--M-VL---YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (647)
Q Consensus 154 ~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~--~-~~---~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (647)
-++.|..||+.+++-+.+=..+..-++.-.+ + .. ++++||+.-+-. ...--||..|..+..=..+...
T Consensus 76 KYSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~DG------h~nLGvy~ldr~~g~~~~L~~~ 149 (339)
T PF09910_consen 76 KYSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARADG------HANLGVYSLDRRTGKAEKLSSN 149 (339)
T ss_pred ccceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCEEEEEecCC------cceeeeEEEcccCCceeeccCC
Confidence 3677999999888633221111111222111 1 12 267788764321 1223688899999988888766
Q ss_pred CCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeE
Q 006384 228 FGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW 284 (647)
Q Consensus 228 ~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W 284 (647)
|.+. .+.+.+..+| |. .. -..-...+.+||+.+.+|
T Consensus 150 -----ps~K---G~~~~D~a~F---~i-~~---------~~~g~~~i~~~Dli~~~~ 185 (339)
T PF09910_consen 150 -----PSLK---GTLVHDYACF---GI-NN---------FHKGVSGIHCLDLISGKW 185 (339)
T ss_pred -----CCcC---ceEeeeeEEE---ec-cc---------cccCCceEEEEEccCCeE
Confidence 4442 2333333333 22 11 012345699999999999
No 157
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=58.35 E-value=3e+02 Score=30.58 Aligned_cols=66 Identities=14% Similarity=0.106 Sum_probs=38.5
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEE
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYV 213 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~ 213 (647)
.+.+++.|+.. ..|.++|+.+.+-...-. .........+..-++.+++.+.+ -..+.+
T Consensus 257 ~g~~i~Sgs~D-----------~tvriWd~~~~~~~~~l~--~hs~~is~~~f~~d~~~l~s~s~---------d~~i~v 314 (456)
T KOG0266|consen 257 DGNLLVSGSDD-----------GTVRIWDVRTGECVRKLK--GHSDGISGLAFSPDGNLLVSASY---------DGTIRV 314 (456)
T ss_pred CCCEEEEecCC-----------CcEEEEeccCCeEEEeee--ccCCceEEEEECCCCCEEEEcCC---------CccEEE
Confidence 35788888854 458889998855433322 12222222222235667776654 246888
Q ss_pred EEcCCCce
Q 006384 214 FDLDQFKW 221 (647)
Q Consensus 214 yD~~t~~W 221 (647)
||+.+..-
T Consensus 315 wd~~~~~~ 322 (456)
T KOG0266|consen 315 WDLETGSK 322 (456)
T ss_pred EECCCCce
Confidence 99887663
No 158
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=57.59 E-value=1.6e+02 Score=32.69 Aligned_cols=51 Identities=22% Similarity=0.366 Sum_probs=34.1
Q ss_pred cEEEEEcCC----CceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCe
Q 006384 210 DLYVFDLDQ----FKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (647)
Q Consensus 210 dv~~yD~~t----~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (647)
.|..||... ..|...... |-.|-++...+..|+|-=|+++. ++.||.....
T Consensus 188 ~VtlwDv~g~sp~~~~~~~HsA-------P~~gicfspsne~l~vsVG~Dkk----------------i~~yD~~s~~ 242 (673)
T KOG4378|consen 188 AVTLWDVQGMSPIFHASEAHSA-------PCRGICFSPSNEALLVSVGYDKK----------------INIYDIRSQA 242 (673)
T ss_pred eEEEEeccCCCcccchhhhccC-------CcCcceecCCccceEEEecccce----------------EEEeeccccc
Confidence 455666543 235544333 44566667779999999999877 8899987543
No 159
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=55.35 E-value=3e+02 Score=29.69 Aligned_cols=178 Identities=12% Similarity=0.030 Sum_probs=84.1
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEE-EecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~-~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~ 149 (647)
|........+.++||.+. + +.+..+|+.+.+-. .+.. ....++++.. +++.++.+.+
T Consensus 39 h~~~~~s~Dgr~~yv~~r---d-------g~vsviD~~~~~~v~~i~~-----G~~~~~i~~s~DG~~~~v~n~------ 97 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANR---D-------GTVSVIDLATGKVVATIKV-----GGNPRGIAVSPDGKYVYVANY------ 97 (369)
T ss_dssp EEEEE-TT-SSEEEEEET---T-------SEEEEEETTSSSEEEEEE------SSEEEEEEE--TTTEEEEEEE------
T ss_pred eeEEEecCCCCEEEEEcC---C-------CeEEEEECCcccEEEEEec-----CCCcceEEEcCCCCEEEEEec------
Confidence 444433222467888764 2 26889999888633 3332 2333333332 4443333332
Q ss_pred ccccccCcEEEEECCCCcEE-EcccCCC----CCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEe
Q 006384 150 ERFHHYKDFWMLDLKTNQWE-QLNLKGC----PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~-~~~~~~~----P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (647)
.-+.+.++|..+.+=. .++..++ +.+|...-.+...+..||+--.. ...+|..|....+=..+
T Consensus 98 ----~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd--------~~~I~vVdy~d~~~~~~ 165 (369)
T PF02239_consen 98 ----EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD--------TGEIWVVDYSDPKNLKV 165 (369)
T ss_dssp ----ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT--------TTEEEEEETTTSSCEEE
T ss_pred ----CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc--------CCeEEEEEeccccccce
Confidence 2367889998876533 3333222 22343322223355556654332 35788888765432222
Q ss_pred ccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeE
Q 006384 225 KPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFS 301 (647)
Q Consensus 225 ~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s 301 (647)
... ..++.-|-+....+.=|++.+... .+.+-++|..+.+-..+-..|..|.+..+..
T Consensus 166 ~~i-----~~g~~~~D~~~dpdgry~~va~~~--------------sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~ 223 (369)
T PF02239_consen 166 TTI-----KVGRFPHDGGFDPDGRYFLVAANG--------------SNKIAVIDTKTGKLVALIDTGKKPHPGPGAN 223 (369)
T ss_dssp EEE-----E--TTEEEEEE-TTSSEEEEEEGG--------------GTEEEEEETTTTEEEEEEE-SSSBEETTEEE
T ss_pred eee-----cccccccccccCcccceeeecccc--------------cceeEEEeeccceEEEEeecccccccccccc
Confidence 222 345555666555443333444322 2467888988876665544444444433333
No 160
>KOG2773 consensus Apoptosis antagonizing transcription factor/protein transport protein [Transcription; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.94 E-value=13 Score=40.26 Aligned_cols=30 Identities=20% Similarity=0.189 Sum_probs=21.9
Q ss_pred HhcCCCCCCCCCCCCCcHHHHHHhhHHHHHH
Q 006384 587 ANLGLSDSQRTPMPGESLKDFYRRTSMYWQM 617 (647)
Q Consensus 587 ~~~~~~~~~~tp~~~e~l~~f~~rt~~~w~~ 617 (647)
-|-.+++++.-|+| |+|-.|=.-..+-=+.
T Consensus 204 lQKa~~~anqLP~~-ev~~lf~sd~~ee~st 233 (483)
T KOG2773|consen 204 LQKADDDANQLPQP-EVLSLFKSDDEEELST 233 (483)
T ss_pred HHHhhhhhhcCCCh-hhHHHhhcccchhHHH
Confidence 45567899999999 9999996655433333
No 161
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=53.90 E-value=2.6e+02 Score=28.57 Aligned_cols=168 Identities=14% Similarity=0.094 Sum_probs=78.2
Q ss_pred eeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEE---CCCCcEEEcccCCCCC-------CcceeEEEEECCEEEEEe
Q 006384 127 AHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLD---LKTNQWEQLNLKGCPS-------PRSGHRMVLYKHKIIVFG 196 (647)
Q Consensus 127 ~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD---~~t~~W~~~~~~~~P~-------~R~~h~~~~~~~~lyv~G 196 (647)
..++-+++++||..=-...-... .+.....|+ ...+.|+.-.....|. ...-|+.+.+++.-|.+|
T Consensus 77 CmSMGv~~NRLfa~iEtR~~a~~----km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~G 152 (367)
T PF12217_consen 77 CMSMGVVGNRLFAVIETRTVASN----KMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVG 152 (367)
T ss_dssp -B-EEEETTEEEEEEEEEETTT------EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEE
T ss_pred eeeeeeecceeeEEEeehhhhhh----hhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEE
Confidence 34567789999886432111111 123334444 4577897655433444 455688888888888887
Q ss_pred cccCCCCceeeeCcEEEEE----cCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceee
Q 006384 197 GFYDTLREVRYYNDLYVFD----LDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHS 272 (647)
Q Consensus 197 G~~~~~~~~~~~~dv~~yD----~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~ 272 (647)
=.++... .+-+.-++.=| +....=..|+.. ....-+-.++-.+++.||+.--.... ...-.
T Consensus 153 yHnGD~s-PRe~G~~yfs~~~~sp~~~vrr~i~se----y~~~AsEPCvkyY~g~LyLtTRgt~~----------~~~GS 217 (367)
T PF12217_consen 153 YHNGDVS-PRELGFLYFSDAFASPGVFVRRIIPSE----YERNASEPCVKYYDGVLYLTTRGTLP----------TNPGS 217 (367)
T ss_dssp EEE-SSS-S-EEEEEEETTTTT-TT--EEEE--GG----G-TTEEEEEEEEETTEEEEEEEES-T----------TS---
T ss_pred eccCCCC-cceeeEEEecccccCCcceeeeechhh----hccccccchhhhhCCEEEEEEcCcCC----------CCCcc
Confidence 6554432 11122121111 111111222221 12233445556679999998643221 12334
Q ss_pred eEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecce
Q 006384 273 DLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGV 315 (647)
Q Consensus 273 dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~ 315 (647)
.+.+-+.....|+.+..... .-....-.+.+++.|||||-.
T Consensus 218 ~L~rs~d~G~~w~slrfp~n--vHhtnlPFakvgD~l~mFgsE 258 (367)
T PF12217_consen 218 SLHRSDDNGQNWSSLRFPNN--VHHTNLPFAKVGDVLYMFGSE 258 (367)
T ss_dssp EEEEESSTTSS-EEEE-TT-----SS---EEEETTEEEEEEE-
T ss_pred eeeeecccCCchhhcccccc--ccccCCCceeeCCEEEEEecc
Confidence 56677777888999875311 123334467789999999954
No 162
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=53.05 E-value=2.3e+02 Score=33.89 Aligned_cols=34 Identities=12% Similarity=0.070 Sum_probs=23.5
Q ss_pred EEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc--eEEeccC
Q 006384 184 RMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPR 227 (647)
Q Consensus 184 ~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~ 227 (647)
+-+++++.||+... .+.|+.+|..|.+ |+.-...
T Consensus 189 TPlvvgg~lYv~t~----------~~~V~ALDa~TGk~lW~~d~~~ 224 (764)
T TIGR03074 189 TPLKVGDTLYLCTP----------HNKVIALDAATGKEKWKFDPKL 224 (764)
T ss_pred CCEEECCEEEEECC----------CCeEEEEECCCCcEEEEEcCCC
Confidence 34677999999754 3568888888654 8765433
No 163
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=51.81 E-value=4.6e+02 Score=30.84 Aligned_cols=158 Identities=13% Similarity=0.156 Sum_probs=82.8
Q ss_pred eEEEEEC--CEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCce
Q 006384 128 HQAVSWK--NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREV 205 (647)
Q Consensus 128 ha~v~~~--~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~ 205 (647)
-..++++ |.-+.||+.- +..+.+|+-.+.+...-.. ....|.......-++.+++.|+-+
T Consensus 310 I~t~~~N~tGDWiA~g~~k----------lgQLlVweWqsEsYVlKQQ--gH~~~i~~l~YSpDgq~iaTG~eD------ 371 (893)
T KOG0291|consen 310 ILTVSFNSTGDWIAFGCSK----------LGQLLVWEWQSESYVLKQQ--GHSDRITSLAYSPDGQLIATGAED------ 371 (893)
T ss_pred eeEEEecccCCEEEEcCCc----------cceEEEEEeeccceeeecc--ccccceeeEEECCCCcEEEeccCC------
Confidence 3344554 6666777632 3456667655554332211 134444433333377888888854
Q ss_pred eeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCe
Q 006384 206 RYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (647)
Q Consensus 206 ~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (647)
..|-+||..+.-.. ++. ..+-++++++.+ .+..++.--.++. |-.+|+...+
T Consensus 372 ---gKVKvWn~~SgfC~-vTF------teHts~Vt~v~f~~~g~~llssSLDGt----------------VRAwDlkRYr 425 (893)
T KOG0291|consen 372 ---GKVKVWNTQSGFCF-VTF------TEHTSGVTAVQFTARGNVLLSSSLDGT----------------VRAWDLKRYR 425 (893)
T ss_pred ---CcEEEEeccCceEE-EEe------ccCCCceEEEEEEecCCEEEEeecCCe----------------EEeeeecccc
Confidence 35667777664322 222 123344444443 5555555555444 4455543321
Q ss_pred -EEEeecCCCCCCCceeeEEEEEC--CeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeE
Q 006384 284 -WSKVKKIGMPPGPRAGFSMCVHK--KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (647)
Q Consensus 284 -W~~v~~~g~~P~~R~~~s~~~~~--~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (647)
+.... .|.| ..++++.++ |-|++.|+.+. -+|+++++.|++-..+-
T Consensus 426 NfRTft----~P~p-~QfscvavD~sGelV~AG~~d~-------------F~IfvWS~qTGqllDiL 474 (893)
T KOG0291|consen 426 NFRTFT----SPEP-IQFSCVAVDPSGELVCAGAQDS-------------FEIFVWSVQTGQLLDIL 474 (893)
T ss_pred eeeeec----CCCc-eeeeEEEEcCCCCEEEeeccce-------------EEEEEEEeecCeeeehh
Confidence 22221 2444 456666665 88888887643 45777777777655443
No 164
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=50.76 E-value=3.4e+02 Score=29.01 Aligned_cols=146 Identities=13% Similarity=0.140 Sum_probs=78.3
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEE
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYV 213 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~ 213 (647)
++.+.+.||.. +-.+++++.++.|--.-+ -..--.-..+..+++.+++.||..+ .|.+
T Consensus 75 ~~~l~aTGGgD-----------D~AflW~~~~ge~~~elt--gHKDSVt~~~FshdgtlLATGdmsG---------~v~v 132 (399)
T KOG0296|consen 75 NNNLVATGGGD-----------DLAFLWDISTGEFAGELT--GHKDSVTCCSFSHDGTLLATGDMSG---------KVLV 132 (399)
T ss_pred CCceEEecCCC-----------ceEEEEEccCCcceeEec--CCCCceEEEEEccCceEEEecCCCc---------cEEE
Confidence 56788888864 345778888887543322 1122222334445788888888743 4556
Q ss_pred EEcCC--CceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCC
Q 006384 214 FDLDQ--FKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG 291 (647)
Q Consensus 214 yD~~t--~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g 291 (647)
|...+ .+|.......... -..-|- ...|+++|-.++. +|+|.+....-.++-+ |
T Consensus 133 ~~~stg~~~~~~~~e~~die---Wl~WHp----~a~illAG~~DGs----------------vWmw~ip~~~~~kv~~-G 188 (399)
T KOG0296|consen 133 FKVSTGGEQWKLDQEVEDIE---WLKWHP----RAHILLAGSTDGS----------------VWMWQIPSQALCKVMS-G 188 (399)
T ss_pred EEcccCceEEEeecccCceE---EEEecc----cccEEEeecCCCc----------------EEEEECCCcceeeEec-C
Confidence 65554 4465542221100 000000 3457777776665 8999987764444433 1
Q ss_pred CCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCC
Q 006384 292 MPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (647)
Q Consensus 292 ~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (647)
+..+..++..+-+++.++.| +.+ ..|-++|+.+.
T Consensus 189 --h~~~ct~G~f~pdGKr~~tg-y~d-------------gti~~Wn~ktg 222 (399)
T KOG0296|consen 189 --HNSPCTCGEFIPDGKRILTG-YDD-------------GTIIVWNPKTG 222 (399)
T ss_pred --CCCCcccccccCCCceEEEE-ecC-------------ceEEEEecCCC
Confidence 23333333334456655554 222 34777777766
No 165
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=50.67 E-value=4.8e+02 Score=30.71 Aligned_cols=110 Identities=13% Similarity=0.139 Sum_probs=61.6
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcE
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv 211 (647)
++.+++.|+... .|-+||..++-...- . ..+-++++++.+ .++.++.--.+ ..|
T Consensus 361 Dgq~iaTG~eDg-----------KVKvWn~~SgfC~vT-F---teHts~Vt~v~f~~~g~~llssSLD---------GtV 416 (893)
T KOG0291|consen 361 DGQLIATGAEDG-----------KVKVWNTQSGFCFVT-F---TEHTSGVTAVQFTARGNVLLSSSLD---------GTV 416 (893)
T ss_pred CCcEEEeccCCC-----------cEEEEeccCceEEEE-e---ccCCCceEEEEEEecCCEEEEeecC---------CeE
Confidence 677888888643 466777766543221 1 234555555544 45555543332 346
Q ss_pred EEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEe
Q 006384 212 YVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (647)
Q Consensus 212 ~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v 287 (647)
-.+|+..++=-+--.. |.|+...++++- .+.|++.|+.+. -++++++.++.+--.+
T Consensus 417 RAwDlkRYrNfRTft~-----P~p~QfscvavD~sGelV~AG~~d~---------------F~IfvWS~qTGqllDi 473 (893)
T KOG0291|consen 417 RAWDLKRYRNFRTFTS-----PEPIQFSCVAVDPSGELVCAGAQDS---------------FEIFVWSVQTGQLLDI 473 (893)
T ss_pred EeeeecccceeeeecC-----CCceeeeEEEEcCCCCEEEeeccce---------------EEEEEEEeecCeeeeh
Confidence 6677665443222222 556555554444 478888887643 2577877777765554
No 166
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=50.66 E-value=12 Score=41.40 Aligned_cols=32 Identities=16% Similarity=0.269 Sum_probs=16.5
Q ss_pred ECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCc
Q 006384 107 DVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEF 144 (647)
Q Consensus 107 d~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~ 144 (647)
++..-.|+.+.-.. +..+..-++.+|=|+|..
T Consensus 47 ei~~~~w~k~~r~~------~LrV~tk~g~~~~~~GF~ 78 (615)
T KOG0526|consen 47 EIDKVKWQKGVRGY------GLRVFTKDGGVYRFDGFR 78 (615)
T ss_pred Hhhhhhhhhhcccc------ceEEEccCCceEEecCcC
Confidence 44455677654321 122223356788888853
No 167
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=50.63 E-value=11 Score=41.51 Aligned_cols=8 Identities=25% Similarity=0.742 Sum_probs=4.5
Q ss_pred HhhHHHHH
Q 006384 609 RRTSMYWQ 616 (647)
Q Consensus 609 ~rt~~~w~ 616 (647)
.||+--|+
T Consensus 198 grqrklWk 205 (694)
T KOG4264|consen 198 GRQRKLWK 205 (694)
T ss_pred hhhhhhhh
Confidence 35555665
No 168
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=50.13 E-value=5.3 Score=37.22 Aligned_cols=9 Identities=11% Similarity=0.198 Sum_probs=3.7
Q ss_pred CeEEEecce
Q 006384 464 DTLYVYGGM 472 (647)
Q Consensus 464 ~~Lyi~GG~ 472 (647)
+-+||.|-.
T Consensus 97 GPVhisG~~ 105 (149)
T PF03066_consen 97 GPVHISGQH 105 (149)
T ss_dssp S-EEEEEEE
T ss_pred CCEEeeCcc
Confidence 444554443
No 169
>COG5129 MAK16 Nuclear protein with HMG-like acidic region [General function prediction only]
Probab=49.53 E-value=9 Score=37.35 Aligned_cols=10 Identities=10% Similarity=0.694 Sum_probs=6.1
Q ss_pred hhccccCCCC
Q 006384 506 EWVEASEGED 515 (647)
Q Consensus 506 ~w~~~~~~~~ 515 (647)
.|++++...+
T Consensus 233 kWl~~~~~~~ 242 (303)
T COG5129 233 KWLGSDQSME 242 (303)
T ss_pred HHhccccchh
Confidence 4888755433
No 170
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=49.07 E-value=3.6e+02 Score=28.83 Aligned_cols=61 Identities=16% Similarity=0.259 Sum_probs=37.0
Q ss_pred cceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEE--ECCEEEEEeCCcC
Q 006384 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVS--WKNYLYIFGGEFT 145 (647)
Q Consensus 70 ~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~--~~~~iyv~GG~~~ 145 (647)
.-|++...| ++.+.+.||. . +..|.++..+..|-..-. .-.-..+++. +++.++..|+..+
T Consensus 66 svFavsl~P--~~~l~aTGGg----D-----D~AflW~~~~ge~~~elt----gHKDSVt~~~FshdgtlLATGdmsG 128 (399)
T KOG0296|consen 66 SVFAVSLHP--NNNLVATGGG----D-----DLAFLWDISTGEFAGELT----GHKDSVTCCSFSHDGTLLATGDMSG 128 (399)
T ss_pred ceEEEEeCC--CCceEEecCC----C-----ceEEEEEccCCcceeEec----CCCCceEEEEEccCceEEEecCCCc
Confidence 345666777 6889999994 2 345777888887653322 1122223333 3677888888643
No 171
>KOG3241 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.79 E-value=13 Score=35.10 Aligned_cols=9 Identities=11% Similarity=0.242 Sum_probs=4.3
Q ss_pred CCccccccc
Q 006384 450 KPCGRINSC 458 (647)
Q Consensus 450 ~P~~R~~~~ 458 (647)
.|..|..+.
T Consensus 164 ~~s~~~~~~ 172 (227)
T KOG3241|consen 164 FPSTSLEEY 172 (227)
T ss_pred ccchhHHHH
Confidence 455554443
No 172
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=48.12 E-value=1.9e+02 Score=28.09 Aligned_cols=69 Identities=14% Similarity=0.307 Sum_probs=42.6
Q ss_pred cCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE---CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccC
Q 006384 155 YKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (647)
Q Consensus 155 ~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~---~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (647)
...+|++|+.++.|..+.....+ ..+..--+.| .+-++|+|..+++.. --..||.|++.++.-+.+...
T Consensus 87 iGkIYIkn~~~~~~~~L~i~~~~-~k~sPK~i~WiDD~~L~vIIG~a~GTvS---~GGnLy~~nl~tg~~~~ly~~ 158 (200)
T PF15525_consen 87 IGKIYIKNLNNNNWWSLQIDQNE-EKYSPKYIEWIDDNNLAVIIGYAHGTVS---KGGNLYKYNLNTGNLTELYEW 158 (200)
T ss_pred ceeEEEEecCCCceEEEEecCcc-cccCCceeEEecCCcEEEEEccccceEc---cCCeEEEEEccCCceeEeeec
Confidence 56788888888888766442211 1222223333 335666775554322 235799999999988888765
No 173
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=47.88 E-value=3.2e+02 Score=27.77 Aligned_cols=120 Identities=17% Similarity=0.190 Sum_probs=65.0
Q ss_pred CeEEEecCCC---CCCCcceeEEEE-ECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEE
Q 006384 111 QEWKVISSPN---SPPPRSAHQAVS-WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMV 186 (647)
Q Consensus 111 ~~W~~l~s~~---~P~~R~~ha~v~-~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~ 186 (647)
..|+...++. .|.|-.+.-... -.|.|+..||- .-+|+.|+++++.++.-. --.-+-|+.+
T Consensus 99 ~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD------------~~~y~~dlE~G~i~r~~r---GHtDYvH~vv 163 (325)
T KOG0649|consen 99 RLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD------------GVIYQVDLEDGRIQREYR---GHTDYVHSVV 163 (325)
T ss_pred hhhhhcCccccCcccCCccceeEeccCCCcEEEecCC------------eEEEEEEecCCEEEEEEc---CCcceeeeee
Confidence 4577655543 244443332222 36888888873 358899999998776532 2345556665
Q ss_pred EECC-EEEEEecccCCCCceeeeCcEEEEEcCCCceEEe-ccCCCCCCCCCceee--eEEEeCCEEEEEecc
Q 006384 187 LYKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI-KPRFGSMWPSPRSGF--QFFVYQDEVFLYGGY 254 (647)
Q Consensus 187 ~~~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v-~~~~~~~~P~~R~~~--s~~~~~~~Iyv~GG~ 254 (647)
.-+. -=++-|+-+ ..+-++|+.|.+-.++ .+-.......|..+- .+...+..-.|+||-
T Consensus 164 ~R~~~~qilsG~ED---------GtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG 226 (325)
T KOG0649|consen 164 GRNANGQILSGAED---------GTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG 226 (325)
T ss_pred ecccCcceeecCCC---------ccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC
Confidence 5332 234445543 3467788888776544 222221112232333 344445566667764
No 174
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=47.85 E-value=2.4e+02 Score=27.38 Aligned_cols=67 Identities=15% Similarity=0.263 Sum_probs=43.0
Q ss_pred eeCcEEEEECCCCeEEEecCCCCC---CCcceeEEEEE-C-CEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEccc
Q 006384 99 VYGDLYRYDVEKQEWKVISSPNSP---PPRSAHQAVSW-K-NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNL 173 (647)
Q Consensus 99 ~~ndl~~yd~~~~~W~~l~s~~~P---~~R~~ha~v~~-~-~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~ 173 (647)
-...+|.+|..++.|..+...+.+ .|. -+..+ + +-++|+|..++.-.. -..||+|++.++.-..+..
T Consensus 86 giGkIYIkn~~~~~~~~L~i~~~~~k~sPK---~i~WiDD~~L~vIIG~a~GTvS~-----GGnLy~~nl~tg~~~~ly~ 157 (200)
T PF15525_consen 86 GIGKIYIKNLNNNNWWSLQIDQNEEKYSPK---YIEWIDDNNLAVIIGYAHGTVSK-----GGNLYKYNLNTGNLTELYE 157 (200)
T ss_pred cceeEEEEecCCCceEEEEecCcccccCCc---eeEEecCCcEEEEEccccceEcc-----CCeEEEEEccCCceeEeee
Confidence 467999999999988766433221 233 12333 3 456666644333222 3679999999999888765
No 175
>PRK01029 tolB translocation protein TolB; Provisional
Probab=47.77 E-value=4.2e+02 Score=29.15 Aligned_cols=61 Identities=15% Similarity=0.054 Sum_probs=37.2
Q ss_pred eeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 272 SDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 272 ~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
.++++||+.+...+.+... + +........ +++.++|..... -...||.+|+.+.....+..
T Consensus 351 ~~I~v~dl~~g~~~~Lt~~---~--~~~~~p~wSpDG~~L~f~~~~~-----------g~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 351 RQICVYDLATGRDYQLTTS---P--ENKESPSWAIDSLHLVYSAGNS-----------NESELYLISLITKKTRKIVI 412 (428)
T ss_pred cEEEEEECCCCCeEEccCC---C--CCccceEECCCCCEEEEEECCC-----------CCceEEEEECCCCCEEEeec
Confidence 4699999999888877532 1 111122222 555555433211 13579999999998887764
No 176
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=47.09 E-value=3e+02 Score=27.33 Aligned_cols=104 Identities=14% Similarity=0.180 Sum_probs=63.0
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCe--EEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDF 158 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~--W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv 158 (647)
+++||.--|.+. .+.+.++|+.+.+ |+.- .. |..-++-.++.+++.+|+.-=. -.-.
T Consensus 55 ~g~i~esTG~yg-------~S~ir~~~L~~gq~~~s~~--l~-~~~~FgEGit~~gd~~y~LTw~-----------egva 113 (262)
T COG3823 55 DGHILESTGLYG-------FSKIRVSDLTTGQEIFSEK--LA-PDTVFGEGITKLGDYFYQLTWK-----------EGVA 113 (262)
T ss_pred CCEEEEeccccc-------cceeEEEeccCceEEEEee--cC-CccccccceeeccceEEEEEec-----------ccee
Confidence 577777777531 3578999998653 4422 11 2345677888889999997421 1224
Q ss_pred EEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCC
Q 006384 159 WMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (647)
Q Consensus 159 ~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (647)
+.||+.+ ...+.. .+-+--+.+.+.-+..|++--|. ..++.-||.+.
T Consensus 114 f~~d~~t--~~~lg~--~~y~GeGWgLt~d~~~LimsdGs----------atL~frdP~tf 160 (262)
T COG3823 114 FKYDADT--LEELGR--FSYEGEGWGLTSDDKNLIMSDGS----------ATLQFRDPKTF 160 (262)
T ss_pred EEEChHH--hhhhcc--cccCCcceeeecCCcceEeeCCc----------eEEEecCHHHh
Confidence 6677654 334433 34455666777777777776552 44566677664
No 177
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=47.06 E-value=6.7e+02 Score=31.32 Aligned_cols=209 Identities=11% Similarity=0.031 Sum_probs=105.0
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCC--------CC--cceeEEEEE--CCEEEEEeCCcCCCC
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSP--------PP--RSAHQAVSW--KNYLYIFGGEFTSPN 148 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P--------~~--R~~ha~v~~--~~~iyv~GG~~~~~~ 148 (647)
++.|||.-= ..+.+.+||+....-..+...... .. ..-+.+++. ++.|||.-..
T Consensus 579 ~g~lyVaDs---------~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~----- 644 (1057)
T PLN02919 579 NNRLFISDS---------NHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE----- 644 (1057)
T ss_pred CCeEEEEEC---------CCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC-----
Confidence 477887643 125788888876543333321000 01 112444444 4678887542
Q ss_pred CccccccCcEEEEECCCCcEEEcccCCCCC-------------CcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEE
Q 006384 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPS-------------PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYV 213 (647)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~-------------~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~ 213 (647)
.+.+.++|+.++.-+.+...+... -..-+.+++. ++.|||.... .+.+++
T Consensus 645 ------n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~---------~~~I~v 709 (1057)
T PLN02919 645 ------NHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG---------QHQIWE 709 (1057)
T ss_pred ------CceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC---------CCeEEE
Confidence 145788888877655553322100 0111233333 5688886432 356888
Q ss_pred EEcCCCceEEeccCC-----CCCCC---CCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCe
Q 006384 214 FDLDQFKWQEIKPRF-----GSMWP---SPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (647)
Q Consensus 214 yD~~t~~W~~v~~~~-----~~~~P---~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (647)
||+.+.....+.... .+..+ ....-.++++. ++.|||....+. .|.+||+.+..
T Consensus 710 ~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~----------------~Irv~D~~tg~ 773 (1057)
T PLN02919 710 YNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESS----------------SIRALDLKTGG 773 (1057)
T ss_pred EECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCC----------------eEEEEECCCCc
Confidence 998776654432210 00000 00111223333 446888765443 48888887655
Q ss_pred EEEeecCC-CCCC--------------Cce--eeEEEEE-CCeEEEecceeccccCccccccccCCcEEEEECCCCcEEE
Q 006384 284 WSKVKKIG-MPPG--------------PRA--GFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (647)
Q Consensus 284 W~~v~~~g-~~P~--------------~R~--~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (647)
...+.... ..+. .+. -.++++- ++.|||.-.. .+.|.+||+.++....
T Consensus 774 ~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~--------------N~rIrviD~~tg~v~t 839 (1057)
T PLN02919 774 SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY--------------NHKIKKLDPATKRVTT 839 (1057)
T ss_pred EEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC--------------CCEEEEEECCCCeEEE
Confidence 33222100 0000 001 1233333 4667776543 3569999999887776
Q ss_pred eEe
Q 006384 346 LEL 348 (647)
Q Consensus 346 l~~ 348 (647)
+..
T Consensus 840 iaG 842 (1057)
T PLN02919 840 LAG 842 (1057)
T ss_pred Eec
Confidence 664
No 178
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=47.00 E-value=5.1e+02 Score=29.93 Aligned_cols=77 Identities=17% Similarity=0.274 Sum_probs=44.8
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCe------EEEecCCCCC-CCcc-eeEEEEEC-CEEEEEe
Q 006384 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQE------WKVISSPNSP-PPRS-AHQAVSWK-NYLYIFG 141 (647)
Q Consensus 71 ~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~------W~~l~s~~~P-~~R~-~ha~v~~~-~~iyv~G 141 (647)
+..+.+.+.+++.+++-||. + ..++.||+.+.. ...++....+ .++. -++++..+ +.++|-|
T Consensus 119 YVkcla~~ak~~~lvaSgGL--D-------~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsG 189 (735)
T KOG0308|consen 119 YVKCLAYIAKNNELVASGGL--D-------RKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSG 189 (735)
T ss_pred hheeeeecccCceeEEecCC--C-------ccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEec
Confidence 34445554668999999995 2 356666766542 2233322233 3333 23444442 4577777
Q ss_pred CCcCCCCCccccccCcEEEEECCCCc
Q 006384 142 GEFTSPNQERFHHYKDFWMLDLKTNQ 167 (647)
Q Consensus 142 G~~~~~~~~~~~~~~dv~~yD~~t~~ 167 (647)
|. -+++-.||+.+..
T Consensus 190 gt-----------ek~lr~wDprt~~ 204 (735)
T KOG0308|consen 190 GT-----------EKDLRLWDPRTCK 204 (735)
T ss_pred Cc-----------ccceEEecccccc
Confidence 73 3688899998875
No 179
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=46.90 E-value=4.3e+02 Score=29.04 Aligned_cols=57 Identities=16% Similarity=0.149 Sum_probs=39.3
Q ss_pred eeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCC
Q 006384 98 YVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN 166 (647)
Q Consensus 98 ~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~ 166 (647)
.+.|++|++|-.-+.--+++... |..|. +++-..++.+|+.-= .-..-+++.|+++-
T Consensus 403 e~~N~vYilDe~lnvvGkltGl~-~gERI-YAvRf~gdv~yiVTf----------rqtDPlfviDlsNP 459 (603)
T COG4880 403 EPVNAVYILDENLNVVGKLTGLA-PGERI-YAVRFVGDVLYIVTF----------RQTDPLFVIDLSNP 459 (603)
T ss_pred CccceeEEEcCCCcEEEEEeccC-CCceE-EEEEEeCceEEEEEE----------eccCceEEEEcCCC
Confidence 36799999998888766776542 45554 455566888888742 23466888888654
No 180
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=45.30 E-value=4.2e+02 Score=28.46 Aligned_cols=78 Identities=12% Similarity=-0.023 Sum_probs=46.3
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEE-EecCCCCCCCcce-----eEEEE--ECCEEEEEeCCcCCCCCccc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSPPPRSA-----HQAVS--WKNYLYIFGGEFTSPNQERF 152 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~-~l~s~~~P~~R~~-----ha~v~--~~~~iyv~GG~~~~~~~~~~ 152 (647)
+..|||.-..+..+....-.+.+-.||+.+.+-. .++.+ |.||.. +.++. -+..|||+- . +
T Consensus 57 g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p--~~p~~~~~~~~~~~~ls~dgk~l~V~n-~--~------ 125 (352)
T TIGR02658 57 GSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELP--EGPRFLVGTYPWMTSLTPDNKTLLFYQ-F--S------ 125 (352)
T ss_pred CCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccC--CCchhhccCccceEEECCCCCEEEEec-C--C------
Confidence 5788888875433333334567899999988655 44443 344522 12222 245677762 1 1
Q ss_pred cccCcEEEEECCCCcEEE
Q 006384 153 HHYKDFWMLDLKTNQWEQ 170 (647)
Q Consensus 153 ~~~~dv~~yD~~t~~W~~ 170 (647)
.-+.|-++|+.+++-..
T Consensus 126 -p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 126 -PSPAVGVVDLEGKAFVR 142 (352)
T ss_pred -CCCEEEEEECCCCcEEE
Confidence 13678889998887544
No 181
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=44.75 E-value=13 Score=42.81 Aligned_cols=7 Identities=0% Similarity=0.643 Sum_probs=3.9
Q ss_pred eEEEecc
Q 006384 465 TLYVYGG 471 (647)
Q Consensus 465 ~Lyi~GG 471 (647)
.+|||--
T Consensus 803 mvfIfKd 809 (960)
T KOG1189|consen 803 MVFIFKD 809 (960)
T ss_pred EEEEecc
Confidence 4666633
No 182
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=44.47 E-value=6.9e+02 Score=30.84 Aligned_cols=193 Identities=15% Similarity=0.073 Sum_probs=91.7
Q ss_pred CCCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEE-EecCCCCCCCcceeEEEE-----ECCEE
Q 006384 64 PAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSPPPRSAHQAVS-----WKNYL 137 (647)
Q Consensus 64 ~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~-~l~s~~~P~~R~~ha~v~-----~~~~i 137 (647)
-.|.+|.-..++-.....++||+.|+. ..+-++|..+..-. .++. .+...+++ +.+.+
T Consensus 1160 ~~~~~r~~~~v~dWqQ~~G~Ll~tGd~----------r~IRIWDa~~E~~~~diP~------~s~t~vTaLS~~~~~gn~ 1223 (1387)
T KOG1517|consen 1160 QLPGARGTGLVVDWQQQSGHLLVTGDV----------RSIRIWDAHKEQVVADIPY------GSSTLVTALSADLVHGNI 1223 (1387)
T ss_pred cCccCCCCCeeeehhhhCCeEEecCCe----------eEEEEEecccceeEeeccc------CCCccceeecccccCCce
Confidence 356677555555554445788887773 24555666554322 2221 12222222 24667
Q ss_pred EEEeCCcCCCCCccccccCcEEEEECCC-------CcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCc
Q 006384 138 YIFGGEFTSPNQERFHHYKDFWMLDLKT-------NQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYND 210 (647)
Q Consensus 138 yv~GG~~~~~~~~~~~~~~dv~~yD~~t-------~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~d 210 (647)
++.|=.+ ..|-+||... ..|+.-.. + ++.-|....-++.-=++.|.. -.+
T Consensus 1224 i~AGfaD-----------GsvRvyD~R~a~~ds~v~~~R~h~~---~-~~Iv~~slq~~G~~elvSgs~--------~G~ 1280 (1387)
T KOG1517|consen 1224 IAAGFAD-----------GSVRVYDRRMAPPDSLVCVYREHND---V-EPIVHLSLQRQGLGELVSGSQ--------DGD 1280 (1387)
T ss_pred EEEeecC-----------CceEEeecccCCccccceeecccCC---c-ccceeEEeecCCCcceeeecc--------CCe
Confidence 7776332 2356677532 23333322 1 113333333334333444442 357
Q ss_pred EEEEEcCCCceEEeccCCCCCCCCCc-ee--e-eEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEE
Q 006384 211 LYVFDLDQFKWQEIKPRFGSMWPSPR-SG--F-QFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS 285 (647)
Q Consensus 211 v~~yD~~t~~W~~v~~~~~~~~P~~R-~~--~-s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~ 285 (647)
++.+|+... ....... .-.++ +| + ++.++ .-.|+..|+. .. +-+|+.....-.
T Consensus 1281 I~~~DlR~~--~~e~~~~---iv~~~~yGs~lTal~VH~hapiiAsGs~-q~----------------ikIy~~~G~~l~ 1338 (1387)
T KOG1517|consen 1281 IQLLDLRMS--SKETFLT---IVAHWEYGSALTALTVHEHAPIIASGSA-QL----------------IKIYSLSGEQLN 1338 (1387)
T ss_pred EEEEecccC--cccccce---eeeccccCccceeeeeccCCCeeeecCc-ce----------------EEEEecChhhhc
Confidence 888888764 2221110 01111 22 2 33444 4457777664 32 556665544433
Q ss_pred EeecCCCCCCCceee--EEEEECCeEEEecceec
Q 006384 286 KVKKIGMPPGPRAGF--SMCVHKKRALLFGGVVD 317 (647)
Q Consensus 286 ~v~~~g~~P~~R~~~--s~~~~~~~iyifGG~~~ 317 (647)
.+...+..-..|.++ +++++..++.+.-|..+
T Consensus 1339 ~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~D 1372 (1387)
T KOG1517|consen 1339 IIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSAD 1372 (1387)
T ss_pred ccccCcccccCcCCCcceeeecchhHhhhhccCC
Confidence 333222222334443 55667888887777654
No 183
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=44.42 E-value=13 Score=46.60 Aligned_cols=10 Identities=10% Similarity=0.125 Sum_probs=4.7
Q ss_pred CCeEEEecce
Q 006384 306 KKRALLFGGV 315 (647)
Q Consensus 306 ~~~iyifGG~ 315 (647)
+|.+|..|+.
T Consensus 71 ~g~~y~~~~~ 80 (2849)
T PTZ00415 71 NGGIYNLGDA 80 (2849)
T ss_pred CCCEEeccCc
Confidence 4445555443
No 184
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.74 E-value=2.9e+02 Score=29.72 Aligned_cols=96 Identities=19% Similarity=0.166 Sum_probs=49.7
Q ss_pred ccCcEEEEECCCCcEEEcccCC-CCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCC
Q 006384 154 HYKDFWMLDLKTNQWEQLNLKG-CPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232 (647)
Q Consensus 154 ~~~dv~~yD~~t~~W~~~~~~~-~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~ 232 (647)
.+..|-.||+..+. +.+.... +-.+.+..+. ..++.++++|- +...+..||+.+.+---.... +..
T Consensus 224 ~~hqvR~YDt~~qR-RPV~~fd~~E~~is~~~l-~p~gn~Iy~gn---------~~g~l~~FD~r~~kl~g~~~k--g~t 290 (412)
T KOG3881|consen 224 RYHQVRLYDTRHQR-RPVAQFDFLENPISSTGL-TPSGNFIYTGN---------TKGQLAKFDLRGGKLLGCGLK--GIT 290 (412)
T ss_pred cceeEEEecCcccC-cceeEeccccCcceeeee-cCCCcEEEEec---------ccchhheecccCceeeccccC--Ccc
Confidence 35678899998554 2222211 1222322222 22444444444 346788899887654333221 111
Q ss_pred CCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCC
Q 006384 233 PSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT 281 (647)
Q Consensus 233 P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t 281 (647)
-..|+ ...+ ...++..+|.+.. +-+||..+
T Consensus 291 Gsirs---ih~hp~~~~las~GLDRy----------------vRIhD~kt 321 (412)
T KOG3881|consen 291 GSIRS---IHCHPTHPVLASCGLDRY----------------VRIHDIKT 321 (412)
T ss_pred CCcce---EEEcCCCceEEeecccee----------------EEEeeccc
Confidence 12232 2233 4478888888765 77888776
No 185
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=43.34 E-value=7.9 Score=45.56 Aligned_cols=11 Identities=0% Similarity=0.298 Sum_probs=5.9
Q ss_pred CCcEEEEECCC
Q 006384 330 LNELYGFQLDN 340 (647)
Q Consensus 330 ~ndl~~yd~~t 340 (647)
...+|.+.+.+
T Consensus 535 ~~~~~lv~~t~ 545 (787)
T PF03115_consen 535 VSSFFLVKVTK 545 (787)
T ss_dssp EEEEEEEEESS
T ss_pred EEEEEEEEEec
Confidence 44455555554
No 186
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=42.51 E-value=18 Score=41.09 Aligned_cols=7 Identities=43% Similarity=0.914 Sum_probs=3.5
Q ss_pred hhccccC
Q 006384 506 EWVEASE 512 (647)
Q Consensus 506 ~w~~~~~ 512 (647)
||-+++.
T Consensus 526 EWEEEep 532 (811)
T KOG4364|consen 526 EWEEEEP 532 (811)
T ss_pred cccccCC
Confidence 4655443
No 187
>PTZ00420 coronin; Provisional
Probab=42.50 E-value=5.9e+02 Score=29.34 Aligned_cols=51 Identities=12% Similarity=0.137 Sum_probs=27.2
Q ss_pred CcEEEEECCCCcEE-EcccCCCCCCcceeEEEE-ECCEEEEEecccCCCCceeeeCcEEEEEcCCCc
Q 006384 156 KDFWMLDLKTNQWE-QLNLKGCPSPRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (647)
Q Consensus 156 ~dv~~yD~~t~~W~-~~~~~~~P~~R~~h~~~~-~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (647)
..+.+||+.+..=. .+. .+ ..-+++.. .++.+++.++.. ..+.+||+.+.+
T Consensus 148 gtIrIWDl~tg~~~~~i~---~~--~~V~SlswspdG~lLat~s~D---------~~IrIwD~Rsg~ 200 (568)
T PTZ00420 148 SFVNIWDIENEKRAFQIN---MP--KKLSSLKWNIKGNLLSGTCVG---------KHMHIIDPRKQE 200 (568)
T ss_pred CeEEEEECCCCcEEEEEe---cC--CcEEEEEECCCCCEEEEEecC---------CEEEEEECCCCc
Confidence 35778888776411 111 11 11122222 356777766632 458889998753
No 188
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=41.21 E-value=17 Score=43.80 Aligned_cols=7 Identities=14% Similarity=0.344 Sum_probs=3.1
Q ss_pred HHHHhhh
Q 006384 43 ILLSIQK 49 (647)
Q Consensus 43 ~l~~~~~ 49 (647)
.+.+|..
T Consensus 88 ml~Rf~~ 94 (840)
T PF04147_consen 88 MLERFTR 94 (840)
T ss_pred HHHHHHH
Confidence 4444443
No 189
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=40.92 E-value=23 Score=37.52 Aligned_cols=14 Identities=7% Similarity=0.190 Sum_probs=7.4
Q ss_pred CcHHHHHHhhHHHH
Q 006384 602 ESLKDFYRRTSMYW 615 (647)
Q Consensus 602 e~l~~f~~rt~~~w 615 (647)
..|--|+.|.++--
T Consensus 234 ~dIe~~~Kk~k~~k 247 (324)
T PF05285_consen 234 SDIEGFHKKKKQDK 247 (324)
T ss_pred HHHHhHHhhhhhhH
Confidence 45556776733333
No 190
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=40.54 E-value=4e+02 Score=26.92 Aligned_cols=84 Identities=12% Similarity=0.189 Sum_probs=54.5
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcceeEEEEEC--CEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYK--HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWP 233 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~--~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P 233 (647)
+.+++||..|++-.+.-. ...+-. -++.++ ..+++-|+++ ..+..||..+.....+... -
T Consensus 81 k~v~vwDV~TGkv~Rr~r--gH~aqV--NtV~fNeesSVv~SgsfD---------~s~r~wDCRS~s~ePiQil-----d 142 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRFR--GHLAQV--NTVRFNEESSVVASGSFD---------SSVRLWDCRSRSFEPIQIL-----D 142 (307)
T ss_pred ceEEEEEcccCeeeeecc--ccccee--eEEEecCcceEEEecccc---------ceeEEEEcccCCCCccchh-----h
Confidence 568899998886322110 011111 133443 3566677763 4688899988888777766 5
Q ss_pred CCceeeeEEEeCCEEEEEecccCC
Q 006384 234 SPRSGFQFFVYQDEVFLYGGYSKE 257 (647)
Q Consensus 234 ~~R~~~s~~~~~~~Iyv~GG~~~~ 257 (647)
..+-+-..+.+.+..+|.|..++.
T Consensus 143 ea~D~V~Si~v~~heIvaGS~DGt 166 (307)
T KOG0316|consen 143 EAKDGVSSIDVAEHEIVAGSVDGT 166 (307)
T ss_pred hhcCceeEEEecccEEEeeccCCc
Confidence 677777777888888888877665
No 191
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=40.45 E-value=17 Score=45.67 Aligned_cols=11 Identities=36% Similarity=0.558 Sum_probs=4.8
Q ss_pred EEEecceEeec
Q 006384 466 LYVYGGMMEIN 476 (647)
Q Consensus 466 Lyi~GG~~e~g 476 (647)
.|-.-|.-+.+
T Consensus 115 ~y~~~g~~~~~ 125 (2849)
T PTZ00415 115 FYPIHGKAEIG 125 (2849)
T ss_pred eeeccchhhcC
Confidence 34444444433
No 192
>PTZ00420 coronin; Provisional
Probab=39.88 E-value=6.4e+02 Score=29.03 Aligned_cols=113 Identities=14% Similarity=0.168 Sum_probs=53.2
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEE-EecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCc
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~-~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~ 150 (647)
++...|. +..+++.||. + +.+.+||+.+.+=. .+. .+ ..-+++... ++.+++.++..
T Consensus 130 sVaf~P~-g~~iLaSgS~--D-------gtIrIWDl~tg~~~~~i~---~~--~~V~SlswspdG~lLat~s~D------ 188 (568)
T PTZ00420 130 IIDWNPM-NYYIMCSSGF--D-------SFVNIWDIENEKRAFQIN---MP--KKLSSLKWNIKGNLLSGTCVG------ 188 (568)
T ss_pred EEEECCC-CCeEEEEEeC--C-------CeEEEEECCCCcEEEEEe---cC--CcEEEEEECCCCCEEEEEecC------
Confidence 3444442 2345556662 2 35778888776421 121 11 111222222 56677766532
Q ss_pred cccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEE-----ECCEEEEEecccCCCCceeeeCcEEEEEcCC
Q 006384 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVL-----YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (647)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~-----~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (647)
+.+.+||+.+..-. ..............+. .++..++.+|+.... ...+.+||+.+
T Consensus 189 -----~~IrIwD~Rsg~~i--~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~-----~R~VkLWDlr~ 249 (568)
T PTZ00420 189 -----KHMHIIDPRKQEIA--SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNN-----MREMKLWDLKN 249 (568)
T ss_pred -----CEEEEEECCCCcEE--EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCC-----ccEEEEEECCC
Confidence 45889999876422 1110111111111111 244566666664421 23588888774
No 193
>smart00284 OLF Olfactomedin-like domains.
Probab=39.25 E-value=4.4e+02 Score=26.94 Aligned_cols=156 Identities=10% Similarity=0.132 Sum_probs=78.7
Q ss_pred CCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEE---EecCC----CCCCCcce---eEEEEEC
Q 006384 65 APSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK---VISSP----NSPPPRSA---HQAVSWK 134 (647)
Q Consensus 65 ~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~---~l~s~----~~P~~R~~---ha~v~~~ 134 (647)
.|.+-.|...++. +|.||.--. ..+.+.+||+.+.+-. .++.. ..|-...+ .-+++-.
T Consensus 70 Lp~~~~GtG~VVY---ngslYY~~~---------~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE 137 (255)
T smart00284 70 LPHAGQGTGVVVY---NGSLYFNKF---------NSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDE 137 (255)
T ss_pred CCCccccccEEEE---CceEEEEec---------CCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcC
Confidence 4555556666666 566665333 2368999999998654 33311 11111111 2234445
Q ss_pred CEEEEEeCCcCCCCCccccccCcEEEEECCCC----cEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCc
Q 006384 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN----QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYND 210 (647)
Q Consensus 135 ~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~----~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~d 210 (647)
+-|+|+=....+... =-|-++|+.+- +|.. +.|....+ .+.++=+.||++-..... -..-
T Consensus 138 ~GLWvIYat~~~~g~------ivvSkLnp~tL~ve~tW~T----~~~k~sa~-naFmvCGvLY~~~s~~~~-----~~~I 201 (255)
T smart00284 138 NGLWVIYATEQNAGK------IVISKLNPATLTIENTWIT----TYNKRSAS-NAFMICGILYVTRSLGSK-----GEKV 201 (255)
T ss_pred CceEEEEeccCCCCC------EEEEeeCcccceEEEEEEc----CCCccccc-ccEEEeeEEEEEccCCCC-----CcEE
Confidence 667776433222111 12346777655 4543 22333333 455566788888532211 1234
Q ss_pred EEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe---CCEEEEEe
Q 006384 211 LYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY---QDEVFLYG 252 (647)
Q Consensus 211 v~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~---~~~Iyv~G 252 (647)
.+.||+.+.+=..+... .+.+...++++-. +.+||++-
T Consensus 202 ~yayDt~t~~~~~~~i~----f~n~y~~~s~l~YNP~d~~LY~wd 242 (255)
T smart00284 202 FYAYDTNTGKEGHLDIP----FENMYEYISMLDYNPNDRKLYAWN 242 (255)
T ss_pred EEEEECCCCccceeeee----eccccccceeceeCCCCCeEEEEe
Confidence 68899988764333222 1333333444443 67788763
No 194
>PF03344 Daxx: Daxx Family; InterPro: IPR005012 Daxx is a ubiquitously expressed protein that functions, in part, as a transcriptional co-repressor through its interaction with a growing number of nuclear, DNA-associated proteins. Human Daxx contains four structural domains commonly found in transcriptional regulatory proteins: two predicted paired amphipathic helices, an acid-rich domain and a Ser/Pro/Thr (SPT)-rich domain. The post-translational modification status of the SPT-domain of hDaxx regulates its association with transcription factors such as Pax3 and ETS-1, effectively bringing hDaxx to sites of active transcription. Through its presence at the site of active transcription, hDaxx could then be able to associate with acetylated histones present in the nucleosomes and Dek that is associated with chromatin. Through its association with the SPT-domain of hDaxx, histone deacetylases may also be brought to the site of active transcription. As a consequence, nucleosomes in the vicinity of the site of active transcription will have the histone tails deacetylated, allowing the deactylated tail to bind to DNA, thereby leading to an inactive chromatin structure and transcriptional repression []. The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis as a component of nuclear promyelocytic leukemia protein (PML) oncogenic domains (PODS). Daxx associates with PODs through a direct interaction with PML, a critical component of PODs. The interaction is a dynamic, cell cycle regulated event and is dependent on the post-translational modification of PML by the small ubiquitin-related modifier SUMO-1. ; PDB: 2KZS_A 2KZU_A.
Probab=39.12 E-value=10 Score=44.44 Aligned_cols=9 Identities=22% Similarity=0.050 Sum_probs=0.0
Q ss_pred CeEEEecce
Q 006384 307 KRALLFGGV 315 (647)
Q Consensus 307 ~~iyifGG~ 315 (647)
+.+|-||.+
T Consensus 343 dl~~~~~~~ 351 (713)
T PF03344_consen 343 DLWYNFGCH 351 (713)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 334555543
No 195
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=38.94 E-value=4.7e+02 Score=27.25 Aligned_cols=38 Identities=18% Similarity=0.039 Sum_probs=20.2
Q ss_pred EEEEeCCCCeEEEeecCCCCCCCceeeEEEEE--CCeEEEecc
Q 006384 274 LWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFGG 314 (647)
Q Consensus 274 v~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~--~~~iyifGG 314 (647)
+-.||+...+=..+-. .+..-.+.+.+.. .+++++.|.
T Consensus 253 cRlyDlRaD~~~a~ys---~~~~~~gitSv~FS~SGRlLfagy 292 (343)
T KOG0286|consen 253 CRLYDLRADQELAVYS---HDSIICGITSVAFSKSGRLLFAGY 292 (343)
T ss_pred eEEEeecCCcEEeeec---cCcccCCceeEEEcccccEEEeee
Confidence 6678887664333322 1233444444443 677777763
No 196
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=38.81 E-value=4.3e+02 Score=26.73 Aligned_cols=93 Identities=12% Similarity=0.146 Sum_probs=57.7
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcceeEEEEEC--CEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCC
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK--NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~--~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~ 179 (647)
.++.||..+++--+.=-+ .-....++.++ ..+.+.|+.. ..+-+||..+++.+.+.. +-..
T Consensus 82 ~v~vwDV~TGkv~Rr~rg----H~aqVNtV~fNeesSVv~SgsfD-----------~s~r~wDCRS~s~ePiQi--ldea 144 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRRFRG----HLAQVNTVRFNEESSVVASGSFD-----------SSVRLWDCRSRSFEPIQI--LDEA 144 (307)
T ss_pred eEEEEEcccCeeeeeccc----ccceeeEEEecCcceEEEecccc-----------ceeEEEEcccCCCCccch--hhhh
Confidence 578888888743211000 00111234443 3455555532 457789999999888877 5677
Q ss_pred cceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc
Q 006384 180 RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (647)
Q Consensus 180 R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (647)
+-+-.++.+.+..+|.|..++ .+-.||+..++
T Consensus 145 ~D~V~Si~v~~heIvaGS~DG---------tvRtydiR~G~ 176 (307)
T KOG0316|consen 145 KDGVSSIDVAEHEIVAGSVDG---------TVRTYDIRKGT 176 (307)
T ss_pred cCceeEEEecccEEEeeccCC---------cEEEEEeecce
Confidence 888888888888888776543 45677776543
No 197
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=37.73 E-value=6e+02 Score=28.12 Aligned_cols=96 Identities=15% Similarity=0.148 Sum_probs=52.5
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSP 235 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~ 235 (647)
..+.+||...+.=......+.+... ...+....+.+++.|+.+ ..+.++|+.+.+-...-.. .
T Consensus 225 ~tiriwd~~~~~~~~~~l~gH~~~v-~~~~f~p~g~~i~Sgs~D---------~tvriWd~~~~~~~~~l~~-------h 287 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKTLKGHSTYV-TSVAFSPDGNLLVSGSDD---------GTVRIWDVRTGECVRKLKG-------H 287 (456)
T ss_pred ceEEEeeccCCCeEEEEecCCCCce-EEEEecCCCCEEEEecCC---------CcEEEEeccCCeEEEeeec-------c
Confidence 4578888844421222222233333 222222355889988864 5688899988544333221 1
Q ss_pred ceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeE
Q 006384 236 RSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW 284 (647)
Q Consensus 236 R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W 284 (647)
..+-+.+.+ ++.+++.+.+++. +.+||+.+..-
T Consensus 288 s~~is~~~f~~d~~~l~s~s~d~~----------------i~vwd~~~~~~ 322 (456)
T KOG0266|consen 288 SDGISGLAFSPDGNLLVSASYDGT----------------IRVWDLETGSK 322 (456)
T ss_pred CCceEEEEECCCCCEEEEcCCCcc----------------EEEEECCCCce
Confidence 112222222 7778888877554 78899887663
No 198
>KOG1980 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.65 E-value=31 Score=39.17 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=15.7
Q ss_pred hcCCCCCCCCCCCCCcHHHHHHh
Q 006384 588 NLGLSDSQRTPMPGESLKDFYRR 610 (647)
Q Consensus 588 ~~~~~~~~~tp~~~e~l~~f~~r 610 (647)
+.-..|...|| |.|++|+=|.+
T Consensus 452 e~~fPDEvdt~-~d~~Arerfqk 473 (754)
T KOG1980|consen 452 ESEFPDEVDTP-PDESARERFQK 473 (754)
T ss_pred hhhCCCccccC-CChHHHHHHHH
Confidence 44567777777 67888877765
No 199
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=37.42 E-value=4.4e+02 Score=26.42 Aligned_cols=211 Identities=13% Similarity=0.137 Sum_probs=97.8
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECC-CCeEEEecCC------CCCCCcceeEEEEECCEEEEEeCCc
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVE-KQEWKVISSP------NSPPPRSAHQAVSWKNYLYIFGGEF 144 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~-~~~W~~l~s~------~~P~~R~~ha~v~~~~~iyv~GG~~ 144 (647)
.+++..+ +++|+||-.............-.+.+..+ ..+|...... ..+.+-....+..-++.+++.. +.
T Consensus 51 p~~~~~~--~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~~~~~~~i~~~~G~l~~~~-~~ 127 (275)
T PF13088_consen 51 PSLVVDP--DGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSGPGRGPPIQLPDGRLIAPY-YH 127 (275)
T ss_dssp EEEEEET--TSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEECSEEEEEEECTTEEEEEE-EE
T ss_pred cEEEEeC--CCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceeccceeeeeEecCCCEEEEE-ee
Confidence 3344445 68888886321111100001111255555 4589865421 0111111222333377777762 11
Q ss_pred CCCCCccccccCcEEEEECCC-CcEEEcccCCCCCCcceeEEEE-E-CCEEEEEecccCCCCceeeeCcEEEEEcC-CCc
Q 006384 145 TSPNQERFHHYKDFWMLDLKT-NQWEQLNLKGCPSPRSGHRMVL-Y-KHKIIVFGGFYDTLREVRYYNDLYVFDLD-QFK 220 (647)
Q Consensus 145 ~~~~~~~~~~~~dv~~yD~~t-~~W~~~~~~~~P~~R~~h~~~~-~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~-t~~ 220 (647)
... .....+..|.... .+|....... +.....+.+.+ . ++.||++--.. .. -.-++.+... -.+
T Consensus 128 ~~~-----~~~~~~~~~S~D~G~tW~~~~~~~-~~~~~~e~~~~~~~dG~l~~~~R~~-~~-----~~~~~~~S~D~G~T 195 (275)
T PF13088_consen 128 ESG-----GSFSAFVYYSDDGGKTWSSGSPIP-DGQGECEPSIVELPDGRLLAVFRTE-GN-----DDIYISRSTDGGRT 195 (275)
T ss_dssp ESS-----CEEEEEEEEESSTTSSEEEEEECE-CSEEEEEEEEEEETTSEEEEEEEEC-SS-----TEEEEEEESSTTSS
T ss_pred ccc-----cCcceEEEEeCCCCceeecccccc-ccCCcceeEEEECCCCcEEEEEEcc-CC-----CcEEEEEECCCCCc
Confidence 111 1134455555554 4699887622 22244444443 2 67888875432 10 0122333333 357
Q ss_pred eEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCcee
Q 006384 221 WQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAG 299 (647)
Q Consensus 221 W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~ 299 (647)
|+..... ..|.+.....++.+ ++.++++...... ...-.+++-.-...+|..+......|...++
T Consensus 196 Ws~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----------r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~ 261 (275)
T PF13088_consen 196 WSPPQPT---NLPNPNSSISLVRLSDGRLLLVYNNPDG-----------RSNLSLYVSEDGGKTWSRPKTIDDGPNGDSG 261 (275)
T ss_dssp -EEEEEE---ECSSCCEEEEEEECTTSEEEEEEECSST-----------SEEEEEEEECTTCEEEEEEEEEEEEE-CCEE
T ss_pred CCCceec---ccCcccCCceEEEcCCCCEEEEEECCCC-----------CCceEEEEEeCCCCcCCccEEEeCCCCCcEE
Confidence 9986533 12555565555554 6688888773211 2222333333447899877544222323344
Q ss_pred eE-EEEE-CCeEEE
Q 006384 300 FS-MCVH-KKRALL 311 (647)
Q Consensus 300 ~s-~~~~-~~~iyi 311 (647)
++ ++.. +++|+|
T Consensus 262 Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 262 YPSLTQLPDGKLYI 275 (275)
T ss_dssp EEEEEEEETTEEEE
T ss_pred CCeeEEeCCCcCCC
Confidence 44 4444 578886
No 200
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=36.96 E-value=11 Score=35.04 Aligned_cols=6 Identities=33% Similarity=0.722 Sum_probs=2.2
Q ss_pred EEEEEC
Q 006384 333 LYGFQL 338 (647)
Q Consensus 333 l~~yd~ 338 (647)
.|.|++
T Consensus 17 ~~~f~~ 22 (149)
T PF03066_consen 17 DYTFKV 22 (149)
T ss_dssp EEEE-T
T ss_pred eEEEeC
Confidence 344444
No 201
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=36.38 E-value=2.5e+02 Score=27.92 Aligned_cols=100 Identities=15% Similarity=0.145 Sum_probs=64.4
Q ss_pred EEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCccc
Q 006384 184 RMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKN 263 (647)
Q Consensus 184 ~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~ 263 (647)
+....+++||.--|..+ .+.+.++|+.+.+=..-.+.+ |..-+|-+.+.+++.+|+.--..+.
T Consensus 50 GL~~~~g~i~esTG~yg-------~S~ir~~~L~~gq~~~s~~l~----~~~~FgEGit~~gd~~y~LTw~egv------ 112 (262)
T COG3823 50 GLEYLDGHILESTGLYG-------FSKIRVSDLTTGQEIFSEKLA----PDTVFGEGITKLGDYFYQLTWKEGV------ 112 (262)
T ss_pred ceeeeCCEEEEeccccc-------cceeEEEeccCceEEEEeecC----CccccccceeeccceEEEEEeccce------
Confidence 45566888888888765 467899999877644333331 3345677888889999998765554
Q ss_pred CCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecce
Q 006384 264 QSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGV 315 (647)
Q Consensus 264 ~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~ 315 (647)
.+.||+.+. ..+ |..+.+--|-+.+.-+..|++--|.
T Consensus 113 ----------af~~d~~t~--~~l---g~~~y~GeGWgLt~d~~~LimsdGs 149 (262)
T COG3823 113 ----------AFKYDADTL--EEL---GRFSYEGEGWGLTSDDKNLIMSDGS 149 (262)
T ss_pred ----------eEEEChHHh--hhh---cccccCCcceeeecCCcceEeeCCc
Confidence 567776542 122 3334455566666666667666664
No 202
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=35.59 E-value=5.7e+02 Score=27.21 Aligned_cols=99 Identities=18% Similarity=0.231 Sum_probs=52.8
Q ss_pred cEEEEECCCC--eEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCC--cEEEcccCCCC
Q 006384 102 DLYRYDVEKQ--EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--QWEQLNLKGCP 177 (647)
Q Consensus 102 dl~~yd~~~~--~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~--~W~~~~~~~~P 177 (647)
.+|+||..+. .|+.-... . ++..-..+..++.+|+... ...++.+|..+. .|..-...+ .
T Consensus 122 ~~y~ld~~~G~~~W~~~~~~--~-~~~~~~~v~~~~~v~~~s~------------~g~~~al~~~tG~~~W~~~~~~~-~ 185 (370)
T COG1520 122 KLYALDASTGTLVWSRNVGG--S-PYYASPPVVGDGTVYVGTD------------DGHLYALNADTGTLKWTYETPAP-L 185 (370)
T ss_pred eEEEEECCCCcEEEEEecCC--C-eEEecCcEEcCcEEEEecC------------CCeEEEEEccCCcEEEEEecCCc-c
Confidence 6899999644 68865543 1 3444444444566665531 156888888765 577443311 1
Q ss_pred CCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCC--CceEEe
Q 006384 178 SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ--FKWQEI 224 (647)
Q Consensus 178 ~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t--~~W~~v 224 (647)
..+.....+.-.+.+|+- ... +...++.+|+.+ ..|..-
T Consensus 186 ~~~~~~~~~~~~~~vy~~-~~~-------~~~~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 186 SLSIYGSPAIASGTVYVG-SDG-------YDGILYALNAEDGTLKWSQK 226 (370)
T ss_pred ccccccCceeecceEEEe-cCC-------CcceEEEEEccCCcEeeeee
Confidence 222222222345555553 211 112588899875 458753
No 203
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=35.24 E-value=13 Score=43.93 Aligned_cols=6 Identities=33% Similarity=0.357 Sum_probs=0.0
Q ss_pred ccccCC
Q 006384 636 CFQSSR 641 (647)
Q Consensus 636 ~~~~~~ 641 (647)
|++.||
T Consensus 778 ~~s~SR 783 (787)
T PF03115_consen 778 PLSGSR 783 (787)
T ss_dssp ------
T ss_pred CCCCCC
Confidence 444444
No 204
>PF11134 Phage_stabilise: Phage stabilisation protein; InterPro: IPR021098 This entry represents the Bacteriophage P22, Gp10, DNA-stabilising protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are phage proteins involved with stabilising the head assembly unit and condensed DNA within the capsid [].
Probab=33.86 E-value=6.9e+02 Score=27.62 Aligned_cols=75 Identities=12% Similarity=0.254 Sum_probs=38.7
Q ss_pred eeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCC--Cccee---EE------EEECCEEEEE
Q 006384 127 AHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS--PRSGH---RM------VLYKHKIIVF 195 (647)
Q Consensus 127 ~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~--~R~~h---~~------~~~~~~lyv~ 195 (647)
.|+.+.+++.++.+|+-.... ..||+ +...+=.++.+...-. ..+.| +. ..-++.+|+|
T Consensus 234 ~~s~~~~~~t~~wlg~~~~G~--------~sVy~--~~gyq~~RIST~~IE~~l~~ya~~ela~af~et~~f~~h~~l~i 303 (469)
T PF11134_consen 234 KHSKTKFGNTVAWLGHDATGA--------PSVYR--INGYQASRISTHAIEKALRSYAHDELAIAFMETYQFDGHEFLLI 303 (469)
T ss_pred cceeeecCCEEEEeccCCCCC--------ceEEE--ecCCceeeeccHHHHHHHHhhccHHHHHHHHHHhhcCceEEEEE
Confidence 356667788888888743322 23443 4445555555522200 11111 11 1114456665
Q ss_pred ecccCCCCceeeeCcEEEEEcCCCce
Q 006384 196 GGFYDTLREVRYYNDLYVFDLDQFKW 221 (647)
Q Consensus 196 GG~~~~~~~~~~~~dv~~yD~~t~~W 221 (647)
- ..+..|+||..+++|
T Consensus 304 h----------lp~~tlcyD~at~~~ 319 (469)
T PF11134_consen 304 H----------LPRKTLCYDAATSQW 319 (469)
T ss_pred E----------cCCceEEEEcccCCc
Confidence 2 346789999998855
No 205
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=33.29 E-value=7.4e+02 Score=27.85 Aligned_cols=79 Identities=11% Similarity=0.160 Sum_probs=46.0
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCC-CC
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PS 178 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~-P~ 178 (647)
.+|+++-.+..-..+.... +...+++.+ .+..+.+|=.. ..|.+||..+.. .+..... ..
T Consensus 198 ~vylW~~~s~~v~~l~~~~----~~~vtSv~ws~~G~~LavG~~~-----------g~v~iwD~~~~k--~~~~~~~~h~ 260 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSFG----EELVTSVKWSPDGSHLAVGTSD-----------GTVQIWDVKEQK--KTRTLRGSHA 260 (484)
T ss_pred eEEEEecCCCceEEeEecC----CCceEEEEECCCCCEEEEeecC-----------CeEEEEehhhcc--ccccccCCcC
Confidence 6777777766655554432 455566665 36666666432 458888876554 2222111 22
Q ss_pred CcceeEEEEECCEEEEEeccc
Q 006384 179 PRSGHRMVLYKHKIIVFGGFY 199 (647)
Q Consensus 179 ~R~~h~~~~~~~~lyv~GG~~ 199 (647)
+|. ++..++..++..|...
T Consensus 261 ~rv--g~laW~~~~lssGsr~ 279 (484)
T KOG0305|consen 261 SRV--GSLAWNSSVLSSGSRD 279 (484)
T ss_pred cee--EEEeccCceEEEecCC
Confidence 332 4667888888888864
No 206
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=33.10 E-value=5.6e+02 Score=26.37 Aligned_cols=104 Identities=17% Similarity=0.166 Sum_probs=0.0
Q ss_pred EEEECC--EEEEEecccCCCCceeeeCcEEEEEcCCCc--eEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCC
Q 006384 185 MVLYKH--KIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVST 260 (647)
Q Consensus 185 ~~~~~~--~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~ 260 (647)
.+++++ .++++|.. ...+-..|+.++. |..+ -..|.-.++.++++. +|+|-|.+.
T Consensus 16 LVV~~dskT~v~igSH---------s~~~~avd~~sG~~~We~i--------lg~RiE~sa~vvgdf-VV~GCy~g~--- 74 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSH---------SGIVIAVDPQSGNLIWEAI--------LGVRIECSAIVVGDF-VVLGCYSGG--- 74 (354)
T ss_pred EEEecCCceEEEEecC---------CceEEEecCCCCcEEeehh--------hCceeeeeeEEECCE-EEEEEccCc---
Q ss_pred cccCCCCCceeeeEEEEeCCCC--eEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEEC
Q 006384 261 DKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQL 338 (647)
Q Consensus 261 ~~~~~~~~~~~~dv~~yd~~t~--~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~ 338 (647)
+|.++.++. -|..+.-. .-.....+..-.+-||+---... +|.+|+
T Consensus 75 -------------lYfl~~~tGs~~w~f~~~~----~vk~~a~~d~~~glIycgshd~~---------------~yalD~ 122 (354)
T KOG4649|consen 75 -------------LYFLCVKTGSQIWNFVILE----TVKVRAQCDFDGGLIYCGSHDGN---------------FYALDP 122 (354)
T ss_pred -------------EEEEEecchhheeeeeehh----hhccceEEcCCCceEEEecCCCc---------------EEEecc
Q ss_pred CCC
Q 006384 339 DNH 341 (647)
Q Consensus 339 ~t~ 341 (647)
.+.
T Consensus 123 ~~~ 125 (354)
T KOG4649|consen 123 KTY 125 (354)
T ss_pred ccc
No 207
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=33.02 E-value=8.3e+02 Score=28.33 Aligned_cols=125 Identities=16% Similarity=0.223 Sum_probs=69.5
Q ss_pred CcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCe-EEEecCCCCCCCcceeEEEE---ECCEEEEEeCCc
Q 006384 69 RSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQE-WKVISSPNSPPPRSAHQAVS---WKNYLYIFGGEF 144 (647)
Q Consensus 69 R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~-W~~l~s~~~P~~R~~ha~v~---~~~~iyv~GG~~ 144 (647)
+.-.+.++.| ++.++++|-. ..-.+|++.+..+. -+.+. ..|..+...+... .++++++..
T Consensus 383 ~nIs~~aiSP--dg~~Ia~st~--------~~~~iy~L~~~~~vk~~~v~--~~~~~~~~a~~i~ftid~~k~~~~s--- 447 (691)
T KOG2048|consen 383 ENISCAAISP--DGNLIAISTV--------SRTKIYRLQPDPNVKVINVD--DVPLALLDASAISFTIDKNKLFLVS--- 447 (691)
T ss_pred cceeeeccCC--CCCEEEEeec--------cceEEEEeccCcceeEEEec--cchhhhccceeeEEEecCceEEEEe---
Confidence 3333344445 5677777763 11256666665432 12222 2345553333332 267787775
Q ss_pred CCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcc----eeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc
Q 006384 145 TSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRS----GHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (647)
Q Consensus 145 ~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~----~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (647)
. ...+++.|+..+.+-..+.... |.+.. .......+++|.++++. ..+++|++.+.+
T Consensus 448 --~------~~~~le~~el~~ps~kel~~~~-~~~~~~~I~~l~~SsdG~yiaa~~t~----------g~I~v~nl~~~~ 508 (691)
T KOG2048|consen 448 --K------NIFSLEEFELETPSFKELKSIQ-SQAKCPSISRLVVSSDGNYIAAISTR----------GQIFVYNLETLE 508 (691)
T ss_pred --c------ccceeEEEEecCcchhhhhccc-cccCCCcceeEEEcCCCCEEEEEecc----------ceEEEEEcccce
Confidence 1 1256778888877776665421 22221 11222247889998864 579999999988
Q ss_pred eEEeccC
Q 006384 221 WQEIKPR 227 (647)
Q Consensus 221 W~~v~~~ 227 (647)
-..+.+.
T Consensus 509 ~~~l~~r 515 (691)
T KOG2048|consen 509 SHLLKVR 515 (691)
T ss_pred eecchhc
Confidence 7776644
No 208
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=32.71 E-value=17 Score=36.37 Aligned_cols=7 Identities=14% Similarity=0.268 Sum_probs=3.3
Q ss_pred CCeEEEe
Q 006384 306 KKRALLF 312 (647)
Q Consensus 306 ~~~iyif 312 (647)
+|.+|+|
T Consensus 57 ~g~~yLy 63 (303)
T KOG3064|consen 57 NGVLYLY 63 (303)
T ss_pred CCEEEEE
Confidence 4444444
No 209
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=32.47 E-value=28 Score=38.05 Aligned_cols=11 Identities=27% Similarity=0.489 Sum_probs=4.4
Q ss_pred EEEecceEeec
Q 006384 466 LYVYGGMMEIN 476 (647)
Q Consensus 466 Lyi~GG~~e~g 476 (647)
|+-||=+.-.|
T Consensus 167 l~~~gmLlPCg 177 (615)
T KOG3540|consen 167 LHSYGMLLPCG 177 (615)
T ss_pred eecccceeccc
Confidence 34444443333
No 210
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=31.65 E-value=7.3e+02 Score=27.29 Aligned_cols=100 Identities=13% Similarity=0.258 Sum_probs=50.5
Q ss_pred cEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCC
Q 006384 157 DFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSP 235 (647)
Q Consensus 157 dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~ 235 (647)
.+-+||+++.. .+.. .|..-.--..+.+ .|-.|+.-+.++ ..|.+||+...+ .++.. ..+..
T Consensus 370 ~vkiwdlks~~--~~a~--Fpght~~vk~i~FsENGY~Lat~add--------~~V~lwDLRKl~--n~kt~---~l~~~ 432 (506)
T KOG0289|consen 370 VVKIWDLKSQT--NVAK--FPGHTGPVKAISFSENGYWLATAADD--------GSVKLWDLRKLK--NFKTI---QLDEK 432 (506)
T ss_pred eEEEEEcCCcc--cccc--CCCCCCceeEEEeccCceEEEEEecC--------CeEEEEEehhhc--cccee---ecccc
Confidence 46677887766 3333 2321111122333 333344434322 238888887654 22221 11221
Q ss_pred ceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecC
Q 006384 236 RSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI 290 (647)
Q Consensus 236 R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~ 290 (647)
. +.....+ .+..++++|.+- .+|.|+-.+..|+.+...
T Consensus 433 ~-~v~s~~fD~SGt~L~~~g~~l----------------~Vy~~~k~~k~W~~~~~~ 472 (506)
T KOG0289|consen 433 K-EVNSLSFDQSGTYLGIAGSDL----------------QVYICKKKTKSWTEIKEL 472 (506)
T ss_pred c-cceeEEEcCCCCeEEeeccee----------------EEEEEecccccceeeehh
Confidence 1 1222222 566677776543 278888889999999764
No 211
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=31.37 E-value=6.1e+02 Score=26.28 Aligned_cols=98 Identities=16% Similarity=0.187 Sum_probs=53.0
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEE
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYV 213 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~ 213 (647)
++.+...||... .+..+|+...+- +.. ....-.-+++++..++.++.-+.. ..+-+
T Consensus 203 DGslcasGgkdg-----------~~~LwdL~~~k~--lys--l~a~~~v~sl~fspnrywL~~at~---------~sIkI 258 (315)
T KOG0279|consen 203 DGSLCASGGKDG-----------EAMLWDLNEGKN--LYS--LEAFDIVNSLCFSPNRYWLCAATA---------TSIKI 258 (315)
T ss_pred CCCEEecCCCCc-----------eEEEEEccCCce--eEe--ccCCCeEeeEEecCCceeEeeccC---------CceEE
Confidence 789999999754 355556654432 333 233344556777788888876642 34777
Q ss_pred EEcCCCce-EEeccCCCCCCC-CCc---eeeeEEEeCCEEEEEecccCC
Q 006384 214 FDLDQFKW-QEIKPRFGSMWP-SPR---SGFQFFVYQDEVFLYGGYSKE 257 (647)
Q Consensus 214 yD~~t~~W-~~v~~~~~~~~P-~~R---~~~s~~~~~~~Iyv~GG~~~~ 257 (647)
+|+++..- ..+.+.. ..| ... ..-+++...+..-+|-|+..+
T Consensus 259 wdl~~~~~v~~l~~d~--~g~s~~~~~~~clslaws~dG~tLf~g~td~ 305 (315)
T KOG0279|consen 259 WDLESKAVVEELKLDG--IGPSSKAGDPICLSLAWSADGQTLFAGYTDN 305 (315)
T ss_pred Eeccchhhhhhccccc--cccccccCCcEEEEEEEcCCCcEEEeeecCC
Confidence 77766432 1121111 012 111 122334446666777787655
No 212
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=31.35 E-value=34 Score=39.72 Aligned_cols=10 Identities=10% Similarity=0.229 Sum_probs=6.1
Q ss_pred eCCCCeEEEe
Q 006384 278 DPRTWEWSKV 287 (647)
Q Consensus 278 d~~t~~W~~v 287 (647)
+|...+|..-
T Consensus 756 nPK~~t~~~G 765 (988)
T KOG2038|consen 756 NPKQVTKARG 765 (988)
T ss_pred CcccccccCC
Confidence 5666666654
No 213
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=30.79 E-value=28 Score=39.53 Aligned_cols=6 Identities=17% Similarity=0.711 Sum_probs=2.7
Q ss_pred EEEEcC
Q 006384 84 LILYGG 89 (647)
Q Consensus 84 lyv~GG 89 (647)
||-|-|
T Consensus 344 i~eFdG 349 (952)
T KOG1834|consen 344 IFEFDG 349 (952)
T ss_pred EEEEcC
Confidence 444444
No 214
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=30.48 E-value=30 Score=39.25 Aligned_cols=6 Identities=33% Similarity=1.049 Sum_probs=3.4
Q ss_pred EEEEeC
Q 006384 137 LYIFGG 142 (647)
Q Consensus 137 iyv~GG 142 (647)
||-|-|
T Consensus 344 i~eFdG 349 (952)
T KOG1834|consen 344 IFEFDG 349 (952)
T ss_pred EEEEcC
Confidence 555555
No 215
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=30.34 E-value=7e+02 Score=26.61 Aligned_cols=178 Identities=13% Similarity=0.191 Sum_probs=0.0
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE---CCEEEEEeCCcCCCC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFTSPN 148 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~---~~~iyv~GG~~~~~~ 148 (647)
|...+.| ++++++.--. =...++.|+...+.......-.. .|-++-.=.++ +..+|++.=.++.
T Consensus 148 H~a~~tP--~~~~l~v~DL--------G~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~st-- 214 (346)
T COG2706 148 HSANFTP--DGRYLVVPDL--------GTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNST-- 214 (346)
T ss_pred ceeeeCC--CCCEEEEeec--------CCceEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCE--
Q ss_pred CccccccCcEEEEECCCCcEEEcccCCC-----CCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEE--EcCCC
Q 006384 149 QERFHHYKDFWMLDLKTNQWEQLNLKGC-----PSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVF--DLDQF 219 (647)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~~~-----P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~y--D~~t~ 219 (647)
=+||.||....+.+.+..... +..+...+..+. +..||+. ++..+.+++| |+.+.
T Consensus 215 -------V~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYas---------NRg~dsI~~f~V~~~~g 278 (346)
T COG2706 215 -------VDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYAS---------NRGHDSIAVFSVDPDGG 278 (346)
T ss_pred -------EEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEe---------cCCCCeEEEEEEcCCCC
Q ss_pred ceEEeccCCCCCCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCC
Q 006384 220 KWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGP 296 (647)
Q Consensus 220 ~W~~v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~ 296 (647)
+-..+... |..-...--..+ .+.+++.-+.... .-.++.-|+.+..-+.+...-..|.|
T Consensus 279 ~L~~~~~~-----~teg~~PR~F~i~~~g~~Liaa~q~sd-------------~i~vf~~d~~TG~L~~~~~~~~~p~P 339 (346)
T COG2706 279 KLELVGIT-----PTEGQFPRDFNINPSGRFLIAANQKSD-------------NITVFERDKETGRLTLLGRYAVVPEP 339 (346)
T ss_pred EEEEEEEe-----ccCCcCCccceeCCCCCEEEEEccCCC-------------cEEEEEEcCCCceEEecccccCCCCc
No 216
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=29.40 E-value=1e+03 Score=28.20 Aligned_cols=195 Identities=10% Similarity=0.049 Sum_probs=0.0
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECC-CCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCcc
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVE-KQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQER 151 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~-~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~ 151 (647)
++++. ++.++++.| .-+.+-.+|.. ...-+.++.. +-+++..+.+..||+-|...+
T Consensus 378 sl~vS---~d~~~~~Sg---------a~~SikiWn~~t~kciRTi~~~------y~l~~~Fvpgd~~Iv~G~k~G----- 434 (888)
T KOG0306|consen 378 SLCVS---SDSILLASG---------AGESIKIWNRDTLKCIRTITCG------YILASKFVPGDRYIVLGTKNG----- 434 (888)
T ss_pred EEEee---cCceeeeec---------CCCcEEEEEccCcceeEEeccc------cEEEEEecCCCceEEEeccCC-----
Q ss_pred ccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCC
Q 006384 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSM 231 (647)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~ 231 (647)
.+.+||+.+..--.... ...+-...-+...+++-++.||.+..-. +.+-.++.+ ...+=.++-......
T Consensus 435 -----el~vfdlaS~~l~Eti~--AHdgaIWsi~~~pD~~g~vT~saDktVk---fWdf~l~~~-~~gt~~k~lsl~~~r 503 (888)
T KOG0306|consen 435 -----ELQVFDLASASLVETIR--AHDGAIWSISLSPDNKGFVTGSADKTVK---FWDFKLVVS-VPGTQKKVLSLKHTR 503 (888)
T ss_pred -----ceEEEEeehhhhhhhhh--ccccceeeeeecCCCCceEEecCCcEEE---EEeEEEEec-cCcccceeeeeccce
Q ss_pred CCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE----
Q 006384 232 WPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH---- 305 (647)
Q Consensus 232 ~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~---- 305 (647)
...---...++.+ +++++++|=.+.. +-+|-+.+.++- ...+||..-++
T Consensus 504 tLel~ddvL~v~~Spdgk~LaVsLLdnT----------------VkVyflDtlKFf---------lsLYGHkLPV~smDI 558 (888)
T KOG0306|consen 504 TLELEDDVLCVSVSPDGKLLAVSLLDNT----------------VKVYFLDTLKFF---------LSLYGHKLPVLSMDI 558 (888)
T ss_pred EEeccccEEEEEEcCCCcEEEEEeccCe----------------EEEEEecceeee---------eeecccccceeEEec
Q ss_pred --CCeEEEecceeccccCccccccccCCcEEEEEC
Q 006384 306 --KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQL 338 (647)
Q Consensus 306 --~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~ 338 (647)
+.++++.|+.+. .-.+|-+|.
T Consensus 559 S~DSklivTgSADK------------nVKiWGLdF 581 (888)
T KOG0306|consen 559 SPDSKLIVTGSADK------------NVKIWGLDF 581 (888)
T ss_pred cCCcCeEEeccCCC------------ceEEecccc
No 217
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=29.29 E-value=31 Score=40.69 Aligned_cols=38 Identities=24% Similarity=0.571 Sum_probs=27.7
Q ss_pred CCCCCCCCCCcHHHHHHhh------HHHHHHHHHhcccccCcEEee
Q 006384 593 DSQRTPMPGESLKDFYRRT------SMYWQMAAHEHTQHTGKVIWF 632 (647)
Q Consensus 593 ~~~~tp~~~e~l~~f~~rt------~~~w~~~~~~~~~~~~~~~~~ 632 (647)
-..+.|.|..||.+-|+-- ..+|.-+||=..+.+ ++|+
T Consensus 168 qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~--e~W~ 211 (895)
T KOG2076|consen 168 QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY--ELWK 211 (895)
T ss_pred hCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh--HHHH
Confidence 4567899999999999743 567888887555544 5654
No 218
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=27.71 E-value=1.8e+02 Score=30.90 Aligned_cols=82 Identities=11% Similarity=0.233 Sum_probs=53.8
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSP 235 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~ 235 (647)
+.+-++++.|....+. +...+.+-+++.++++++|-|.. -+++-.||...+..-++-.-..
T Consensus 340 RTikvW~~st~efvRt----l~gHkRGIAClQYr~rlvVSGSS---------DntIRlwdi~~G~cLRvLeGHE------ 400 (499)
T KOG0281|consen 340 RTIKVWSTSTCEFVRT----LNGHKRGIACLQYRDRLVVSGSS---------DNTIRLWDIECGACLRVLEGHE------ 400 (499)
T ss_pred ceEEEEeccceeeehh----hhcccccceehhccCeEEEecCC---------CceEEEEeccccHHHHHHhchH------
Confidence 4566677777665443 23567777888999999998874 3577888887765433311100
Q ss_pred ceeeeEEEeCCEEEEEecccCC
Q 006384 236 RSGFQFFVYQDEVFLYGGYSKE 257 (647)
Q Consensus 236 R~~~s~~~~~~~Iyv~GG~~~~ 257 (647)
.---++.++++-+|-|||++.
T Consensus 401 -eLvRciRFd~krIVSGaYDGk 421 (499)
T KOG0281|consen 401 -ELVRCIRFDNKRIVSGAYDGK 421 (499)
T ss_pred -HhhhheeecCceeeeccccce
Confidence 001235668999999999876
No 219
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=27.60 E-value=7.3e+02 Score=25.98 Aligned_cols=29 Identities=14% Similarity=0.271 Sum_probs=19.2
Q ss_pred eEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCC
Q 006384 300 FSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (647)
Q Consensus 300 ~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (647)
..++..-+.-||++|..+ ..|++|++.+.
T Consensus 236 ~~a~ftPds~Fvl~gs~d-------------g~i~vw~~~tg 264 (311)
T KOG1446|consen 236 LSATFTPDSKFVLSGSDD-------------GTIHVWNLETG 264 (311)
T ss_pred eeEEECCCCcEEEEecCC-------------CcEEEEEcCCC
Confidence 455665666677777654 45899998654
No 220
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=27.56 E-value=7.3e+02 Score=25.99 Aligned_cols=91 Identities=16% Similarity=0.215 Sum_probs=49.7
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCc
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R 180 (647)
+.+-+||+.+..=..+.....|. |.-+-. .....+|.||.. +.+-.+|+.... .... .-.+-
T Consensus 75 g~vr~~Dln~~~~~~igth~~~i-~ci~~~--~~~~~vIsgsWD-----------~~ik~wD~R~~~--~~~~--~d~~k 136 (323)
T KOG1036|consen 75 GQVRRYDLNTGNEDQIGTHDEGI-RCIEYS--YEVGCVISGSWD-----------KTIKFWDPRNKV--VVGT--FDQGK 136 (323)
T ss_pred ceEEEEEecCCcceeeccCCCce-EEEEee--ccCCeEEEcccC-----------ccEEEEeccccc--cccc--cccCc
Confidence 46788999887666665543221 211111 235577888875 346677876521 1111 12223
Q ss_pred ceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCC
Q 006384 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (647)
Q Consensus 181 ~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (647)
.-++|-+.++.|+| |+. -..+.+||+.+.
T Consensus 137 kVy~~~v~g~~LvV-g~~---------~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 137 KVYCMDVSGNRLVV-GTS---------DRKVLIYDLRNL 165 (323)
T ss_pred eEEEEeccCCEEEE-eec---------CceEEEEEcccc
Confidence 44456666666665 442 246888888654
No 221
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=27.52 E-value=8.6e+02 Score=26.80 Aligned_cols=105 Identities=14% Similarity=0.095 Sum_probs=58.6
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEe-cccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFG-GFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~G-G~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (647)
.++|.+|+.+.+-.++.. ......+-...-+++-++|. ...+ ...++++|++...=+++.....
T Consensus 262 ~~iy~~dl~~~~~~~Lt~---~~gi~~~Ps~spdG~~ivf~Sdr~G-------~p~I~~~~~~g~~~~riT~~~~----- 326 (425)
T COG0823 262 PDIYLMDLDGKNLPRLTN---GFGINTSPSWSPDGSKIVFTSDRGG-------RPQIYLYDLEGSQVTRLTFSGG----- 326 (425)
T ss_pred ccEEEEcCCCCcceeccc---CCccccCccCCCCCCEEEEEeCCCC-------CcceEEECCCCCceeEeeccCC-----
Confidence 689999999887444332 23344444444455444443 2211 3489999999887788776521
Q ss_pred CceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCe-EEEeec
Q 006384 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE-WSKVKK 289 (647)
Q Consensus 235 ~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~-W~~v~~ 289 (647)
... +-...-++..++|=++... . -++..+++.+.. |..+..
T Consensus 327 ~~~-~p~~SpdG~~i~~~~~~~g-----------~--~~i~~~~~~~~~~~~~lt~ 368 (425)
T COG0823 327 GNS-NPVWSPDGDKIVFESSSGG-----------Q--WDIDKNDLASGGKIRILTS 368 (425)
T ss_pred CCc-CccCCCCCCEEEEEeccCC-----------c--eeeEEeccCCCCcEEEccc
Confidence 111 1112224444444333322 2 468888886665 877754
No 222
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=26.04 E-value=1.2e+02 Score=20.75 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=15.9
Q ss_pred eEEEEECCeEEEecceeccccCccccccccCCcEEEEECCC
Q 006384 300 FSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (647)
Q Consensus 300 ~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (647)
.+.++.++++|+.+.. ..||+||+.+
T Consensus 15 ~~~~v~~g~vyv~~~d---------------g~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTGD---------------GNLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-TT---------------SEEEEEETT-
T ss_pred cCCEEECCEEEEEcCC---------------CEEEEEeCCC
Confidence 4446678887777652 4599999864
No 223
>COG5177 Uncharacterized conserved protein [Function unknown]
Probab=25.75 E-value=99 Score=34.28 Aligned_cols=14 Identities=29% Similarity=0.375 Sum_probs=10.7
Q ss_pred CCCCCcHHHHHHhh
Q 006384 598 PMPGESLKDFYRRT 611 (647)
Q Consensus 598 p~~~e~l~~f~~rt 611 (647)
-+|.|++++=|.|-
T Consensus 471 lqPse~aier~k~Y 484 (769)
T COG5177 471 LQPSESAIERYKEY 484 (769)
T ss_pred cCccHHHHHHHHHh
Confidence 46889988887764
No 224
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=25.73 E-value=7.9e+02 Score=25.75 Aligned_cols=129 Identities=19% Similarity=0.208 Sum_probs=67.0
Q ss_pred cEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCc
Q 006384 157 DFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPR 236 (647)
Q Consensus 157 dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R 236 (647)
.+-.|+...+.-...-..++| -..++..+..=.++||.. ..|-.||+.+..=..+.... .+.
T Consensus 36 slrlYdv~~~~l~~~~~~~~p----lL~c~F~d~~~~~~G~~d---------g~vr~~Dln~~~~~~igth~-----~~i 97 (323)
T KOG1036|consen 36 SLRLYDVPANSLKLKFKHGAP----LLDCAFADESTIVTGGLD---------GQVRRYDLNTGNEDQIGTHD-----EGI 97 (323)
T ss_pred cEEEEeccchhhhhheecCCc----eeeeeccCCceEEEeccC---------ceEEEEEecCCcceeeccCC-----Cce
Confidence 466677766632211111111 122444555566677753 46788999888766665541 111
Q ss_pred eeeeEEE-eCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecce
Q 006384 237 SGFQFFV-YQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGV 315 (647)
Q Consensus 237 ~~~s~~~-~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~ 315 (647)
. ++.. .....+|-||++.. +-++|+.... .. +..-.+-.-+++.+.+++| |+|+.
T Consensus 98 ~--ci~~~~~~~~vIsgsWD~~----------------ik~wD~R~~~----~~-~~~d~~kkVy~~~v~g~~L-vVg~~ 153 (323)
T KOG1036|consen 98 R--CIEYSYEVGCVISGSWDKT----------------IKFWDPRNKV----VV-GTFDQGKKVYCMDVSGNRL-VVGTS 153 (323)
T ss_pred E--EEEeeccCCeEEEcccCcc----------------EEEEeccccc----cc-cccccCceEEEEeccCCEE-EEeec
Confidence 1 1111 24456778888876 6677776511 11 1111222344555555555 45543
Q ss_pred eccccCccccccccCCcEEEEECCCC
Q 006384 316 VDMEMKGDVIMSLFLNELYGFQLDNH 341 (647)
Q Consensus 316 ~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (647)
. ..+.+||+.+.
T Consensus 154 ~--------------r~v~iyDLRn~ 165 (323)
T KOG1036|consen 154 D--------------RKVLIYDLRNL 165 (323)
T ss_pred C--------------ceEEEEEcccc
Confidence 2 34888988765
No 225
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=25.24 E-value=6.3e+02 Score=29.59 Aligned_cols=12 Identities=25% Similarity=0.302 Sum_probs=9.4
Q ss_pred ECCeEEEeccee
Q 006384 305 HKKRALLFGGVV 316 (647)
Q Consensus 305 ~~~~iyifGG~~ 316 (647)
.++.+++.||.+
T Consensus 629 ~dg~vLasgg~D 640 (707)
T KOG0263|consen 629 RDGNVLASGGAD 640 (707)
T ss_pred cCCCEEEecCCC
Confidence 478899999864
No 226
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=24.99 E-value=7e+02 Score=24.89 Aligned_cols=151 Identities=13% Similarity=0.184 Sum_probs=73.7
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCC-CeEEEecCCCCCCCcceeEEEE-E-CCEEEEEeCCcCCCCCccccccCc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEK-QEWKVISSPNSPPPRSAHQAVS-W-KNYLYIFGGEFTSPNQERFHHYKD 157 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~-~~W~~l~s~~~P~~R~~ha~v~-~-~~~iyv~GG~~~~~~~~~~~~~~d 157 (647)
++.|++. .+.. ... ....++.|.... .+|....... +.....+.+.+ . ++.|+++--.. .. -.-
T Consensus 118 ~G~l~~~--~~~~-~~~-~~~~~~~~S~D~G~tW~~~~~~~-~~~~~~e~~~~~~~dG~l~~~~R~~-~~-------~~~ 184 (275)
T PF13088_consen 118 DGRLIAP--YYHE-SGG-SFSAFVYYSDDGGKTWSSGSPIP-DGQGECEPSIVELPDGRLLAVFRTE-GN-------DDI 184 (275)
T ss_dssp TTEEEEE--EEEE-SSC-EEEEEEEEESSTTSSEEEEEECE-CSEEEEEEEEEEETTSEEEEEEEEC-SS-------TEE
T ss_pred CCCEEEE--Eeec-ccc-CcceEEEEeCCCCceeecccccc-ccCCcceeEEEECCCCcEEEEEEcc-CC-------CcE
Confidence 6787776 1111 111 133455566554 4698776432 22244444433 3 57888875321 10 012
Q ss_pred EEEEECC-CCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCC
Q 006384 158 FWMLDLK-TNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSP 235 (647)
Q Consensus 158 v~~yD~~-t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~ 235 (647)
.+.+... -.+|+......+|.+.....++.+ ++.++++... ...+ ..-.+++-.-...+|..+.....+ +..
T Consensus 185 ~~~~S~D~G~TWs~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~r---~~l~l~~S~D~g~tW~~~~~i~~~--~~~ 258 (275)
T PF13088_consen 185 YISRSTDGGRTWSPPQPTNLPNPNSSISLVRLSDGRLLLVYNN-PDGR---SNLSLYVSEDGGKTWSRPKTIDDG--PNG 258 (275)
T ss_dssp EEEEESSTTSS-EEEEEEECSSCCEEEEEEECTTSEEEEEEEC-SSTS---EEEEEEEECTTCEEEEEEEEEEEE--E-C
T ss_pred EEEEECCCCCcCCCceecccCcccCCceEEEcCCCCEEEEEEC-CCCC---CceEEEEEeCCCCcCCccEEEeCC--CCC
Confidence 3333333 347998765445777666665554 5688888772 1122 112233323336789876554110 222
Q ss_pred ceee-eEEEe-CCEEEE
Q 006384 236 RSGF-QFFVY-QDEVFL 250 (647)
Q Consensus 236 R~~~-s~~~~-~~~Iyv 250 (647)
.+++ +++.. ++.|||
T Consensus 259 ~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 259 DSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp CEEEEEEEEEETTEEEE
T ss_pred cEECCeeEEeCCCcCCC
Confidence 3444 33444 678886
No 227
>KOG0235 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=24.86 E-value=66 Score=31.91 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=22.5
Q ss_pred CCCCCcHHHHHHhhHHHHHHHHHhcc
Q 006384 598 PMPGESLKDFYRRTSMYWQMAAHEHT 623 (647)
Q Consensus 598 p~~~e~l~~f~~rt~~~w~~~~~~~~ 623 (647)
|=.||||.+..+|+..||+..+..+.
T Consensus 128 ~p~~EsL~~~~~R~~~~~~e~i~~~~ 153 (214)
T KOG0235|consen 128 LPDGESLKDCLDRLLPFWNEEIAKES 153 (214)
T ss_pred CCCCccHHHHHHHHHHHHHHhhhhhh
Confidence 55799999999999999999886543
No 228
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=23.13 E-value=7.4e+02 Score=26.10 Aligned_cols=100 Identities=22% Similarity=0.280 Sum_probs=51.5
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEE--EEE--CCEEEEEeCCcCCCC
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQA--VSW--KNYLYIFGGEFTSPN 148 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~--v~~--~~~iyv~GG~~~~~~ 148 (647)
++.++| .+.++++|-. .+.+..||+.+-+. ..+.+ |.....-++ +-+ .+.|||.|...+
T Consensus 221 siSfHP--sGefllvgTd---------Hp~~rlYdv~T~Qc--fvsan-Pd~qht~ai~~V~Ys~t~~lYvTaSkDG--- 283 (430)
T KOG0640|consen 221 SISFHP--SGEFLLVGTD---------HPTLRLYDVNTYQC--FVSAN-PDDQHTGAITQVRYSSTGSLYVTASKDG--- 283 (430)
T ss_pred eEeecC--CCceEEEecC---------CCceeEEeccceeE--eeecC-cccccccceeEEEecCCccEEEEeccCC---
Confidence 456677 5677777762 35677888876543 33332 332222222 223 488999987543
Q ss_pred CccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEeccc
Q 006384 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFY 199 (647)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~ 199 (647)
.+-.||-.++....-- +.--..+.-+++.+ +++.++-.|.+
T Consensus 284 --------~IklwDGVS~rCv~t~--~~AH~gsevcSa~Ftkn~kyiLsSG~D 326 (430)
T KOG0640|consen 284 --------AIKLWDGVSNRCVRTI--GNAHGGSEVCSAVFTKNGKYILSSGKD 326 (430)
T ss_pred --------cEEeeccccHHHHHHH--HhhcCCceeeeEEEccCCeEEeecCCc
Confidence 4666776666532211 11111222223333 56666666753
No 229
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=22.95 E-value=8.1e+02 Score=27.02 Aligned_cols=108 Identities=11% Similarity=0.119 Sum_probs=57.6
Q ss_pred eCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEe
Q 006384 208 YNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (647)
Q Consensus 208 ~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v 287 (647)
..++|.+|+.+..=.++..... .-...+...-+..|+..-...+. .++|++++....=+++
T Consensus 261 ~~~iy~~dl~~~~~~~Lt~~~g-----i~~~Ps~spdG~~ivf~Sdr~G~--------------p~I~~~~~~g~~~~ri 321 (425)
T COG0823 261 SPDIYLMDLDGKNLPRLTNGFG-----INTSPSWSPDGSKIVFTSDRGGR--------------PQIYLYDLEGSQVTRL 321 (425)
T ss_pred CccEEEEcCCCCcceecccCCc-----cccCccCCCCCCEEEEEeCCCCC--------------cceEEECCCCCceeEe
Confidence 3689999998877444443311 11122333334555554333222 3799999988777777
Q ss_pred ecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCc-EEEeEec
Q 006384 288 KKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR-WYPLELR 349 (647)
Q Consensus 288 ~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~-W~~l~~~ 349 (647)
...+. ... +-...-+++.++|=+... +. -++..+++.+.. |..+...
T Consensus 322 T~~~~---~~~-~p~~SpdG~~i~~~~~~~---------g~--~~i~~~~~~~~~~~~~lt~~ 369 (425)
T COG0823 322 TFSGG---GNS-NPVWSPDGDKIVFESSSG---------GQ--WDIDKNDLASGGKIRILTST 369 (425)
T ss_pred eccCC---CCc-CccCCCCCCEEEEEeccC---------Cc--eeeEEeccCCCCcEEEcccc
Confidence 54311 111 111222444444433321 11 568889988776 8888773
No 230
>PF04050 Upf2: Up-frameshift suppressor 2 ; InterPro: IPR007193 This entry represents Up-frameshift suppressor 2 (also known as Nonsense-mediated mRNA decay protein 2). Transcripts harbouring premature signals for translation termination are recognised and rapidly degraded by eukaryotic cells through a pathway known as nonsense-mediated mRNA decay. In Saccharomyces cerevisiae, three trans-acting factors (Upf1 to Upf3) are required for nonsense-mediated mRNA decay [].; PDB: 2WJV_D.
Probab=22.28 E-value=29 Score=33.05 Aligned_cols=6 Identities=0% Similarity=0.302 Sum_probs=2.3
Q ss_pred HHHHHH
Q 006384 581 RIEQIR 586 (647)
Q Consensus 581 ~~~~~~ 586 (647)
+.++++
T Consensus 68 ef~kmm 73 (170)
T PF04050_consen 68 EFQKMM 73 (170)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333443
No 231
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=21.83 E-value=1.1e+03 Score=26.68 Aligned_cols=114 Identities=14% Similarity=0.291 Sum_probs=61.2
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCc
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~ 150 (647)
.++++.| ++..+++||. ++ .+++|.+....-....- .-..|..-+.+++ .+--|+.-|-
T Consensus 447 s~vAv~~--~~~~vaVGG~--Dg-------kvhvysl~g~~l~ee~~--~~~h~a~iT~vaySpd~~yla~~D------- 506 (603)
T KOG0318|consen 447 SAVAVSP--DGSEVAVGGQ--DG-------KVHVYSLSGDELKEEAK--LLEHRAAITDVAYSPDGAYLAAGD------- 506 (603)
T ss_pred ceEEEcC--CCCEEEEecc--cc-------eEEEEEecCCcccceee--eecccCCceEEEECCCCcEEEEec-------
Confidence 3444555 6788889994 22 47788777654332211 1234555566666 3333444332
Q ss_pred cccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCC
Q 006384 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (647)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (647)
..+.+..||..++.- ....-....+|....+-.-+++++..|+.+ ..+++|+...
T Consensus 507 ---a~rkvv~yd~~s~~~-~~~~w~FHtakI~~~aWsP~n~~vATGSlD---------t~Viiysv~k 561 (603)
T KOG0318|consen 507 ---ASRKVVLYDVASREV-KTNRWAFHTAKINCVAWSPNNKLVATGSLD---------TNVIIYSVKK 561 (603)
T ss_pred ---cCCcEEEEEcccCce-ecceeeeeeeeEEEEEeCCCceEEEecccc---------ceEEEEEccC
Confidence 236788888876643 111100134454433333378888888753 3577776543
No 232
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=20.34 E-value=1.2e+03 Score=25.69 Aligned_cols=144 Identities=13% Similarity=0.175 Sum_probs=72.0
Q ss_pred cceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCC
Q 006384 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPN 148 (647)
Q Consensus 70 ~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~ 148 (647)
.-+++++.+ ++.|.+.||.. .+..|| |+.+..-..+-.+. -+.-+++..- +|+.+..||...
T Consensus 305 ~v~~iaf~~--DGSL~~tGGlD-------~~~RvW--DlRtgr~im~L~gH---~k~I~~V~fsPNGy~lATgs~Dn--- 367 (459)
T KOG0272|consen 305 GVFSIAFQP--DGSLAATGGLD-------SLGRVW--DLRTGRCIMFLAGH---IKEILSVAFSPNGYHLATGSSDN--- 367 (459)
T ss_pred ccceeEecC--CCceeeccCcc-------chhhee--ecccCcEEEEeccc---ccceeeEeECCCceEEeecCCCC---
Confidence 345566666 79999999952 233444 77776554332221 1222333333 688888887543
Q ss_pred CccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE---CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEec
Q 006384 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (647)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~---~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (647)
.+-++|+...+= +.. +|.-+.--+-|.+ .+++.+.++++. .+-+|. +..|+.+.
T Consensus 368 --------t~kVWDLR~r~~--ly~--ipAH~nlVS~Vk~~p~~g~fL~TasyD~---------t~kiWs--~~~~~~~k 424 (459)
T KOG0272|consen 368 --------TCKVWDLRMRSE--LYT--IPAHSNLVSQVKYSPQEGYFLVTASYDN---------TVKIWS--TRTWSPLK 424 (459)
T ss_pred --------cEEEeeeccccc--cee--cccccchhhheEecccCCeEEEEcccCc---------ceeeec--CCCcccch
Confidence 344455543331 222 3332222222222 467777777643 344443 44587776
Q ss_pred cCCCCCCCCCceeeeEEEeCCEEEEEecccC
Q 006384 226 PRFGSMWPSPRSGFQFFVYQDEVFLYGGYSK 256 (647)
Q Consensus 226 ~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~ 256 (647)
.+.+ -..+....-...++..++.++++.
T Consensus 425 sLaG---He~kV~s~Dis~d~~~i~t~s~DR 452 (459)
T KOG0272|consen 425 SLAG---HEGKVISLDISPDSQAIATSSFDR 452 (459)
T ss_pred hhcC---CccceEEEEeccCCceEEEeccCc
Confidence 6621 112211111222666667777654
Done!