Query 006384
Match_columns 647
No_of_seqs 417 out of 2836
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 23:35:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006384.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006384hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zgk_A Kelch-like ECH-associat 100.0 7.8E-44 2.7E-48 372.2 31.6 290 63-504 9-298 (308)
2 3ii7_A Kelch-like protein 7; p 100.0 2.5E-42 8.4E-47 359.9 33.1 272 81-503 11-282 (306)
3 2xn4_A Kelch-like protein 2; s 100.0 3.8E-42 1.3E-46 357.8 34.3 269 81-500 15-283 (302)
4 2uvk_A YJHT; unknown function, 100.0 2.2E-42 7.5E-47 368.2 31.1 305 61-502 2-351 (357)
5 2vpj_A Kelch-like protein 12; 100.0 1.1E-41 3.6E-46 354.0 34.2 272 81-503 14-288 (301)
6 4asc_A Kelch repeat and BTB do 100.0 4.3E-42 1.5E-46 360.0 30.6 278 81-502 4-286 (315)
7 2woz_A Kelch repeat and BTB do 100.0 1.3E-41 4.3E-46 356.9 30.3 285 66-501 6-295 (318)
8 4asc_A Kelch repeat and BTB do 100.0 2.6E-41 8.9E-46 354.0 30.6 252 63-346 30-283 (315)
9 2woz_A Kelch repeat and BTB do 100.0 8.2E-41 2.8E-45 350.7 30.4 263 47-346 29-293 (318)
10 3ii7_A Kelch-like protein 7; p 100.0 4.8E-40 1.6E-44 342.6 34.0 243 61-348 38-280 (306)
11 2xn4_A Kelch-like protein 2; s 100.0 4.9E-40 1.7E-44 341.9 33.3 239 62-347 45-283 (302)
12 1zgk_A Kelch-like ECH-associat 100.0 7.8E-40 2.7E-44 341.9 34.3 243 61-348 53-295 (308)
13 2vpj_A Kelch-like protein 12; 100.0 1.5E-38 5.1E-43 330.3 32.4 239 61-348 45-286 (301)
14 2zwa_A Leucine carboxyl methyl 100.0 5.7E-37 2E-41 354.9 29.6 243 63-347 383-642 (695)
15 2uvk_A YJHT; unknown function, 100.0 5.1E-35 1.8E-39 311.3 29.3 264 61-349 47-351 (357)
16 2zwa_A Leucine carboxyl methyl 100.0 3.2E-32 1.1E-36 315.2 25.4 242 119-499 383-641 (695)
17 1k3i_A Galactose oxidase precu 100.0 1.2E-30 4.2E-35 300.5 18.2 308 66-505 183-509 (656)
18 1k3i_A Galactose oxidase precu 100.0 3.1E-29 1.1E-33 288.8 18.9 258 64-348 236-505 (656)
19 3dsm_A Uncharacterized protein 97.7 0.024 8.2E-07 58.3 28.0 193 101-344 17-216 (328)
20 3mbr_X Glutamine cyclotransfer 97.7 0.0036 1.2E-07 61.9 19.8 161 125-343 21-182 (243)
21 3mbr_X Glutamine cyclotransfer 97.6 0.012 4.2E-07 58.1 22.9 189 70-314 22-223 (243)
22 3q7m_A Lipoprotein YFGL, BAMB; 97.5 0.092 3.1E-06 54.5 29.7 185 81-342 103-298 (376)
23 3dsm_A Uncharacterized protein 97.5 0.04 1.4E-06 56.6 26.5 208 67-343 42-256 (328)
24 3nol_A Glutamine cyclotransfer 97.5 0.023 8E-07 56.6 22.7 188 72-314 46-244 (262)
25 3q7m_A Lipoprotein YFGL, BAMB; 97.4 0.047 1.6E-06 56.8 26.1 198 73-345 48-265 (376)
26 2iwa_A Glutamine cyclotransfer 97.4 0.049 1.7E-06 54.6 24.8 202 71-340 23-237 (266)
27 3nok_A Glutaminyl cyclase; bet 97.2 0.022 7.6E-07 56.9 19.0 184 72-314 58-254 (268)
28 3nol_A Glutamine cyclotransfer 97.1 0.018 6E-07 57.5 17.4 157 128-343 46-204 (262)
29 2iwa_A Glutamine cyclotransfer 97.0 0.058 2E-06 54.0 20.1 158 128-342 24-183 (266)
30 1l0q_A Surface layer protein; 96.8 0.042 1.4E-06 57.0 18.0 185 82-345 2-194 (391)
31 3vgz_A Uncharacterized protein 96.8 0.56 1.9E-05 47.2 27.7 208 72-343 44-265 (353)
32 1l0q_A Surface layer protein; 96.7 0.08 2.7E-06 54.8 19.7 194 72-342 35-235 (391)
33 2qc5_A Streptogramin B lactona 96.7 0.33 1.1E-05 47.7 23.5 199 70-347 21-224 (300)
34 4ery_A WD repeat-containing pr 96.6 0.22 7.5E-06 49.8 21.5 195 73-342 70-270 (312)
35 2hqs_A Protein TOLB; TOLB, PAL 96.6 0.14 4.9E-06 54.3 20.9 206 73-348 183-395 (415)
36 2ojh_A Uncharacterized protein 96.6 0.14 5E-06 49.7 19.5 215 72-348 45-266 (297)
37 1gxr_A ESG1, transducin-like e 96.6 0.13 4.3E-06 51.5 19.4 195 72-344 101-300 (337)
38 2z2n_A Virginiamycin B lyase; 96.5 0.35 1.2E-05 47.5 21.9 193 71-341 101-296 (299)
39 2z2n_A Virginiamycin B lyase; 96.5 0.6 2E-05 45.8 23.6 199 71-348 17-220 (299)
40 3nok_A Glutaminyl cyclase; bet 96.5 0.064 2.2E-06 53.5 15.8 154 128-342 58-212 (268)
41 1k8k_C P40, ARP2/3 complex 41 96.4 0.11 3.8E-06 53.0 18.0 150 72-257 12-165 (372)
42 3vgz_A Uncharacterized protein 96.3 0.81 2.8E-05 46.0 23.9 203 72-345 92-308 (353)
43 3jrp_A Fusion protein of prote 96.3 0.27 9.3E-06 49.9 20.2 111 74-219 17-135 (379)
44 3g4e_A Regucalcin; six bladed 96.2 0.53 1.8E-05 47.1 21.6 208 70-344 14-233 (297)
45 3bws_A Protein LP49; two-domai 96.2 0.56 1.9E-05 49.0 22.3 188 102-344 102-296 (433)
46 3jrp_A Fusion protein of prote 96.1 0.2 6.8E-06 51.0 17.9 200 82-349 69-297 (379)
47 1p22_A F-BOX/WD-repeat protein 96.1 0.53 1.8E-05 49.7 21.5 185 81-342 142-327 (435)
48 1q7f_A NHL, brain tumor CG1071 96.0 1.3 4.4E-05 43.4 25.5 207 70-347 31-245 (286)
49 3bws_A Protein LP49; two-domai 95.9 0.5 1.7E-05 49.4 20.5 204 73-344 127-338 (433)
50 2qc5_A Streptogramin B lactona 95.9 1.4 4.9E-05 43.0 23.3 200 71-348 64-267 (300)
51 2vdu_B TRNA (guanine-N(7)-)-me 95.9 0.59 2E-05 49.7 21.1 160 72-286 106-276 (450)
52 1gxr_A ESG1, transducin-like e 95.9 0.29 1E-05 48.8 17.5 194 72-342 55-257 (337)
53 4ery_A WD repeat-containing pr 95.8 0.8 2.7E-05 45.6 20.7 194 73-342 28-225 (312)
54 1pjx_A Dfpase, DIISOPROPYLFLUO 95.7 0.79 2.7E-05 45.4 19.8 135 72-224 21-167 (314)
55 4a2l_A BT_4663, two-component 95.7 0.99 3.4E-05 52.1 23.2 186 102-348 428-622 (795)
56 3v9f_A Two-component system se 95.6 0.44 1.5E-05 55.0 20.0 188 102-348 384-576 (781)
57 1rwi_B Serine/threonine-protei 95.6 0.8 2.7E-05 44.3 19.3 194 70-341 25-223 (270)
58 1kb0_A Quinohemoprotein alcoho 95.6 1.3 4.4E-05 50.4 23.1 120 81-226 77-209 (677)
59 1k8k_C P40, ARP2/3 complex 41 95.5 0.77 2.6E-05 46.5 19.3 206 72-349 56-285 (372)
60 3fm0_A Protein CIAO1; WDR39,SG 95.5 0.56 1.9E-05 48.0 18.2 189 71-315 19-214 (345)
61 3v9f_A Two-component system se 95.5 0.65 2.2E-05 53.5 20.6 179 102-340 470-656 (781)
62 4aez_A CDC20, WD repeat-contai 95.4 0.53 1.8E-05 49.1 18.2 180 102-347 157-343 (401)
63 3ei3_B DNA damage-binding prot 95.4 0.59 2E-05 48.1 18.3 197 71-342 76-284 (383)
64 2xbg_A YCF48-like protein; pho 95.4 2.7 9.3E-05 42.7 23.9 174 81-314 46-223 (327)
65 3dwl_C Actin-related protein 2 95.4 0.032 1.1E-06 57.6 8.3 146 74-257 17-169 (377)
66 1r5m_A SIR4-interacting protei 95.4 0.81 2.8E-05 47.1 19.2 132 156-340 227-361 (425)
67 2ovr_B FBW7, F-BOX/WD repeat p 95.2 2.3 7.7E-05 44.8 22.5 154 133-340 287-442 (445)
68 4a2l_A BT_4663, two-component 95.2 1.9 6.4E-05 49.7 23.4 141 102-289 108-252 (795)
69 2ad6_A Methanol dehydrogenase 95.2 1.2 4E-05 49.6 20.8 120 81-225 62-194 (571)
70 1ri6_A Putative isomerase YBHE 95.1 1.7 5.8E-05 43.2 20.3 118 73-224 42-167 (343)
71 3zwl_B Eukaryotic translation 95.1 2.1 7.2E-05 42.9 21.2 206 72-345 36-254 (369)
72 2z3z_A Dipeptidyl aminopeptida 95.1 1.1 3.8E-05 50.5 20.8 193 101-342 235-437 (706)
73 2aq5_A Coronin-1A; WD40 repeat 95.1 1.1 3.7E-05 46.6 19.2 209 73-350 136-352 (402)
74 1r5m_A SIR4-interacting protei 95.1 2.4 8.3E-05 43.4 21.8 194 72-342 112-321 (425)
75 2ovr_B FBW7, F-BOX/WD repeat p 95.0 2 7E-05 45.1 21.5 182 82-342 129-310 (445)
76 3azo_A Aminopeptidase; POP fam 95.0 1.1 3.8E-05 50.1 20.0 226 72-348 133-377 (662)
77 1jmx_B Amine dehydrogenase; ox 94.9 3.3 0.00011 41.2 21.9 68 81-170 10-79 (349)
78 1nir_A Nitrite reductase; hemo 94.9 1.3 4.5E-05 48.8 20.1 149 156-348 248-415 (543)
79 4e54_B DNA damage-binding prot 94.9 0.14 4.8E-06 54.4 11.7 115 72-219 123-241 (435)
80 1qhu_A Protein (hemopexin); be 94.9 0.96 3.3E-05 48.8 18.1 59 81-166 158-216 (460)
81 2ojh_A Uncharacterized protein 94.9 1 3.5E-05 43.5 17.2 188 100-347 21-213 (297)
82 3hfq_A Uncharacterized protein 94.8 0.62 2.1E-05 47.2 16.1 61 102-173 19-80 (347)
83 2dg1_A DRP35, lactonase; beta 94.8 1 3.5E-05 45.2 17.7 129 72-225 48-178 (333)
84 2vdu_B TRNA (guanine-N(7)-)-me 94.8 1.7 5.9E-05 45.9 20.2 66 135-222 210-275 (450)
85 1got_B GT-beta; complex (GTP-b 94.8 4 0.00014 41.2 23.1 136 156-342 164-303 (340)
86 3jro_A Fusion protein of prote 94.7 0.38 1.3E-05 55.3 15.8 106 81-219 20-133 (753)
87 1kv9_A Type II quinohemoprotei 94.7 4.1 0.00014 46.0 23.9 118 81-224 66-195 (668)
88 2hes_X YDR267CP; beta-propelle 94.7 0.98 3.4E-05 45.7 17.1 162 74-288 113-287 (330)
89 4aez_A CDC20, WD repeat-contai 94.6 2.9 0.0001 43.3 21.2 180 101-344 113-297 (401)
90 3azo_A Aminopeptidase; POP fam 94.5 1.3 4.6E-05 49.4 19.3 208 101-346 102-331 (662)
91 3vl1_A 26S proteasome regulato 94.4 3.8 0.00013 42.2 21.5 104 189-340 258-365 (420)
92 1vyh_C Platelet-activating fac 94.4 2.1 7.3E-05 44.7 19.6 151 73-284 113-268 (410)
93 1yiq_A Quinohemoprotein alcoho 94.4 8 0.00027 43.8 25.6 118 81-224 70-200 (689)
94 3hfq_A Uncharacterized protein 94.4 2.7 9.3E-05 42.3 19.8 215 73-348 44-280 (347)
95 3e5z_A Putative gluconolactona 94.4 2.2 7.4E-05 42.1 18.7 210 70-348 29-254 (296)
96 3ow8_A WD repeat-containing pr 94.4 2.9 0.0001 42.1 19.8 161 102-315 145-310 (321)
97 3v7d_B Cell division control p 94.4 5.6 0.00019 41.8 22.9 172 82-315 280-452 (464)
98 3scy_A Hypothetical bacterial 94.3 4.9 0.00017 40.7 21.7 62 274-348 235-301 (361)
99 1qhu_A Protein (hemopexin); be 94.3 2.4 8.3E-05 45.6 19.7 59 134-219 158-216 (460)
100 1rwi_B Serine/threonine-protei 94.3 2.4 8.1E-05 40.8 18.4 191 72-340 70-264 (270)
101 3iuj_A Prolyl endopeptidase; h 94.3 8.9 0.0003 43.3 25.7 199 101-347 155-366 (693)
102 3e5z_A Putative gluconolactona 94.3 3.6 0.00012 40.4 20.0 169 72-288 72-253 (296)
103 3ow8_A WD repeat-containing pr 94.2 3.1 0.00011 41.9 19.6 175 101-342 102-281 (321)
104 3scy_A Hypothetical bacterial 94.2 1.2 4.1E-05 45.4 16.6 98 102-218 30-129 (361)
105 4g56_B MGC81050 protein; prote 94.1 1.1 3.8E-05 46.1 16.2 149 134-343 150-304 (357)
106 4gqb_B Methylosome protein 50; 94.1 1.5 5.2E-05 45.0 17.2 152 74-285 133-293 (344)
107 1p22_A F-BOX/WD-repeat protein 94.1 2.8 9.7E-05 44.0 19.8 171 102-340 194-365 (435)
108 3mkq_A Coatomer beta'-subunit; 94.1 1.5 5.1E-05 50.1 18.8 194 72-342 59-261 (814)
109 3mkq_A Coatomer beta'-subunit; 94.1 1.3 4.4E-05 50.6 18.2 153 72-282 17-173 (814)
110 4g56_B MGC81050 protein; prote 94.1 0.66 2.3E-05 47.8 14.3 190 73-340 144-343 (357)
111 1nir_A Nitrite reductase; hemo 94.0 4.8 0.00016 44.2 22.1 105 81-223 148-262 (543)
112 1ri6_A Putative isomerase YBHE 94.0 0.96 3.3E-05 45.1 15.1 103 82-217 5-114 (343)
113 3u4y_A Uncharacterized protein 93.9 1.7 5.8E-05 43.3 16.9 108 81-224 9-123 (331)
114 4gga_A P55CDC, cell division c 93.9 1.3 4.4E-05 46.4 16.6 51 274-342 303-355 (420)
115 2hqs_A Protein TOLB; TOLB, PAL 93.9 1.4 4.8E-05 46.5 16.7 186 101-347 159-351 (415)
116 1w6s_A Methanol dehydrogenase 93.8 3 0.0001 46.6 20.1 121 81-226 62-201 (599)
117 3u4y_A Uncharacterized protein 93.8 2.8 9.4E-05 41.7 18.2 199 73-348 44-260 (331)
118 4aow_A Guanine nucleotide-bind 93.8 2.2 7.5E-05 42.4 17.3 137 156-341 195-338 (340)
119 1got_B GT-beta; complex (GTP-b 93.6 6.7 0.00023 39.5 21.2 133 102-282 165-302 (340)
120 3fm0_A Protein CIAO1; WDR39,SG 93.5 2.3 7.9E-05 43.2 17.3 146 73-257 66-217 (345)
121 1pjx_A Dfpase, DIISOPROPYLFLUO 93.5 5.4 0.00019 39.1 19.6 123 72-221 74-211 (314)
122 4gqb_B Methylosome protein 50; 93.5 3.1 0.00011 42.5 18.2 106 134-282 138-247 (344)
123 1q7f_A NHL, brain tumor CG1071 93.4 6.1 0.00021 38.4 25.4 185 72-313 80-268 (286)
124 2pbi_B Guanine nucleotide-bind 93.3 3.8 0.00013 41.8 18.7 136 156-342 176-317 (354)
125 2xdw_A Prolyl endopeptidase; a 93.3 6.7 0.00023 44.3 22.3 150 156-348 259-424 (710)
126 1pex_A Collagenase-3, MMP-13; 93.3 2.7 9.1E-05 40.1 16.0 149 129-343 28-195 (207)
127 2aq5_A Coronin-1A; WD40 repeat 93.3 2.4 8.1E-05 43.9 17.2 66 136-222 145-211 (402)
128 3fvz_A Peptidyl-glycine alpha- 93.3 7.5 0.00026 39.0 24.4 210 72-339 94-321 (329)
129 1pex_A Collagenase-3, MMP-13; 93.3 2.9 9.8E-05 39.9 16.1 148 81-286 33-197 (207)
130 2ynn_A Coatomer subunit beta'; 93.2 5 0.00017 39.7 19.0 143 72-257 17-164 (304)
131 2p4o_A Hypothetical protein; p 93.2 7.3 0.00025 38.8 23.1 118 66-219 29-148 (306)
132 2z3z_A Dipeptidyl aminopeptida 93.2 7.7 0.00026 43.4 22.6 158 101-288 101-301 (706)
133 3vl1_A 26S proteasome regulato 93.1 8.8 0.0003 39.4 21.7 105 81-221 108-215 (420)
134 2pbi_B Guanine nucleotide-bind 93.1 3.4 0.00011 42.2 17.7 133 102-283 177-317 (354)
135 3ott_A Two-component system se 93.0 3.9 0.00013 46.7 19.8 110 81-224 482-592 (758)
136 4aow_A Guanine nucleotide-bind 92.9 4.4 0.00015 40.1 18.1 103 190-342 185-288 (340)
137 2hes_X YDR267CP; beta-propelle 92.9 4.3 0.00015 40.9 18.1 158 134-348 118-288 (330)
138 3zwl_B Eukaryotic translation 92.9 4.4 0.00015 40.4 18.1 68 189-287 186-255 (369)
139 1yr2_A Prolyl oligopeptidase; 92.8 13 0.00046 42.1 24.1 195 101-341 189-396 (741)
140 1erj_A Transcriptional repress 92.8 9.8 0.00034 39.2 21.2 105 134-284 134-241 (393)
141 2ecf_A Dipeptidyl peptidase IV 92.7 2.7 9.3E-05 47.5 17.9 130 68-227 36-190 (741)
142 1qks_A Cytochrome CD1 nitrite 92.7 4.9 0.00017 44.5 19.4 106 208-348 319-434 (567)
143 3no2_A Uncharacterized protein 92.7 7.1 0.00024 38.5 18.9 185 81-342 4-197 (276)
144 1vyh_C Platelet-activating fac 92.3 6.2 0.00021 41.1 18.9 65 134-222 203-269 (410)
145 3iz6_a 40S ribosomal protein R 92.3 11 0.00038 38.6 21.5 185 102-341 181-376 (380)
146 4ggc_A P55CDC, cell division c 92.2 7.7 0.00026 37.8 18.6 112 73-220 72-183 (318)
147 3v7d_B Cell division control p 92.2 13 0.00043 38.9 26.1 133 156-342 290-423 (464)
148 1sq9_A Antiviral protein SKI8; 92.1 11 0.00038 38.1 21.9 69 134-221 197-270 (397)
149 1yfq_A Cell cycle arrest prote 92.0 7.4 0.00025 38.5 18.3 110 72-218 15-131 (342)
150 3g4e_A Regucalcin; six bladed 92.0 9.8 0.00033 37.5 19.1 154 101-286 73-234 (297)
151 3jro_A Fusion protein of prote 92.0 0.7 2.4E-05 53.1 11.7 199 82-348 67-294 (753)
152 1erj_A Transcriptional repress 91.9 5.3 0.00018 41.3 17.7 112 73-222 128-242 (393)
153 3fvz_A Peptidyl-glycine alpha- 91.9 11 0.00038 37.7 27.5 199 101-345 69-282 (329)
154 1sq9_A Antiviral protein SKI8; 91.9 12 0.00041 37.9 21.6 199 83-342 27-269 (397)
155 4a11_B DNA excision repair pro 91.8 2.8 9.5E-05 42.7 15.2 50 274-341 316-366 (408)
156 3c5m_A Oligogalacturonate lyas 91.8 3.3 0.00011 42.1 15.7 211 101-348 168-392 (396)
157 2ynn_A Coatomer subunit beta'; 91.6 8.4 0.00029 38.0 18.1 193 74-342 61-261 (304)
158 1itv_A MMP9; adaptive molecula 91.6 6 0.00021 37.2 15.9 148 129-342 11-176 (195)
159 2dg1_A DRP35, lactonase; beta 91.5 6.7 0.00023 39.0 17.4 121 72-218 90-213 (333)
160 3ott_A Two-component system se 91.4 16 0.00056 41.4 22.6 150 81-288 73-227 (758)
161 4gga_A P55CDC, cell division c 91.4 8.2 0.00028 40.1 18.6 95 101-221 125-221 (420)
162 1flg_A Protein (quinoprotein e 91.2 11 0.00038 41.7 20.1 115 81-223 68-200 (582)
163 3pe7_A Oligogalacturonate lyas 91.2 12 0.00042 37.8 19.4 219 81-348 46-281 (388)
164 2pm7_B Protein transport prote 91.2 3.6 0.00012 40.6 14.8 112 73-219 14-133 (297)
165 3i2n_A WD repeat-containing pr 91.1 7.2 0.00025 38.7 17.2 197 72-340 22-243 (357)
166 4e54_B DNA damage-binding prot 91.1 2 6.8E-05 45.3 13.4 93 102-220 188-284 (435)
167 1pgu_A Actin interacting prote 91.0 6.3 0.00022 42.7 17.9 150 137-340 175-328 (615)
168 1itv_A MMP9; adaptive molecula 91.0 4.2 0.00014 38.3 14.1 145 81-283 16-176 (195)
169 1npe_A Nidogen, entactin; glyc 91.0 12 0.0004 36.2 26.5 198 72-344 39-242 (267)
170 3gre_A Serine/threonine-protei 90.9 16 0.00054 37.8 20.2 67 134-222 181-249 (437)
171 2ghs_A AGR_C_1268P; regucalcin 90.8 15 0.0005 36.9 22.2 121 71-224 51-174 (326)
172 1qks_A Cytochrome CD1 nitrite 90.7 15 0.00051 40.5 20.5 195 81-345 166-378 (567)
173 4a11_B DNA excision repair pro 90.7 2.5 8.5E-05 43.1 13.4 103 82-219 112-219 (408)
174 3dm0_A Maltose-binding peripla 90.6 12 0.00041 41.9 20.2 103 191-343 532-635 (694)
175 3f3f_A Nucleoporin SEH1; struc 90.5 14 0.00047 36.1 23.3 114 73-220 16-145 (351)
176 2pm9_A Protein WEB1, protein t 90.5 5.6 0.00019 40.7 16.0 206 72-342 71-296 (416)
177 3f3f_A Nucleoporin SEH1; struc 90.3 14 0.00048 36.0 21.0 29 306-348 317-346 (351)
178 2bkl_A Prolyl endopeptidase; m 90.3 6.9 0.00024 44.1 17.8 150 156-348 252-405 (695)
179 4d9s_A UVB-resistance protein 90.3 11 0.00037 39.6 18.1 17 298-314 338-355 (406)
180 1pgu_A Actin interacting prote 89.9 7.5 0.00026 42.1 17.2 29 71-111 21-49 (615)
181 4h5i_A Guanine nucleotide-exch 89.8 19 0.00064 36.7 21.2 184 101-340 157-343 (365)
182 3i2n_A WD repeat-containing pr 89.8 4.4 0.00015 40.3 14.2 105 81-218 128-243 (357)
183 3b7f_A Glycosyl hydrolase, BNR 89.8 20 0.00069 37.0 21.6 195 70-312 56-296 (394)
184 2pm9_A Protein WEB1, protein t 89.8 3.5 0.00012 42.3 13.7 150 135-341 178-338 (416)
185 3odt_A Protein DOA1; ubiquitin 89.6 15 0.00052 35.4 20.1 107 188-345 194-301 (313)
186 2pm7_B Protein transport prote 89.6 8.4 0.00029 37.9 16.0 72 246-348 219-294 (297)
187 2bkl_A Prolyl endopeptidase; m 89.6 15 0.00051 41.3 19.8 195 101-341 147-352 (695)
188 1kb0_A Quinohemoprotein alcoho 89.5 11 0.00037 42.6 18.5 123 130-288 73-208 (677)
189 3odt_A Protein DOA1; ubiquitin 89.4 16 0.00055 35.3 18.5 186 81-342 28-216 (313)
190 3b7f_A Glycosyl hydrolase, BNR 89.2 15 0.00052 37.9 18.2 194 102-348 32-270 (394)
191 2xdw_A Prolyl endopeptidase; a 89.1 17 0.00057 41.0 19.8 104 100-224 258-375 (710)
192 3dr2_A Exported gluconolactona 89.0 11 0.00038 37.2 16.4 215 71-348 47-275 (305)
193 3no2_A Uncharacterized protein 88.9 19 0.00063 35.4 19.9 181 70-313 38-230 (276)
194 3dwl_C Actin-related protein 2 88.9 0.68 2.3E-05 47.3 7.3 151 134-341 22-178 (377)
195 2xbg_A YCF48-like protein; pho 88.7 21 0.00073 35.9 23.2 175 109-348 23-201 (327)
196 3sfz_A APAF-1, apoptotic pepti 88.7 2 6.8E-05 51.9 12.3 189 74-342 967-1160(1249)
197 2xyi_A Probable histone-bindin 88.7 1.9 6.5E-05 45.4 10.8 22 189-219 243-264 (430)
198 1pby_B Quinohemoprotein amine 88.6 12 0.00039 36.8 16.2 109 101-223 11-129 (337)
199 1yr2_A Prolyl oligopeptidase; 88.6 19 0.00066 40.7 19.9 150 100-289 293-449 (741)
200 3lrv_A PRE-mRNA-splicing facto 88.3 22 0.00075 35.5 18.7 65 189-283 138-203 (343)
201 1gen_A Gelatinase A; hydrolase 88.2 12 0.0004 35.9 15.0 104 81-219 40-154 (218)
202 3hrp_A Uncharacterized protein 88.0 28 0.00096 36.3 23.6 209 71-348 133-362 (409)
203 3pe7_A Oligogalacturonate lyas 87.9 6.4 0.00022 40.0 14.0 111 101-227 168-282 (388)
204 3bg1_A Protein SEC13 homolog; 87.8 5.8 0.0002 39.5 13.4 116 74-224 19-143 (316)
205 3sfz_A APAF-1, apoptotic pepti 87.7 13 0.00043 44.8 18.6 150 73-283 620-776 (1249)
206 2ecf_A Dipeptidyl peptidase IV 87.7 17 0.00058 40.8 18.7 108 157-287 264-374 (741)
207 3dm0_A Maltose-binding peripla 87.6 29 0.001 38.7 20.5 95 156-285 541-636 (694)
208 2ad6_A Methanol dehydrogenase 87.6 24 0.00082 38.8 19.3 124 130-288 58-194 (571)
209 1kv9_A Type II quinohemoprotei 87.5 21 0.0007 40.2 19.0 123 130-288 62-196 (668)
210 4h5i_A Guanine nucleotide-exch 87.4 20 0.0007 36.4 17.6 103 134-257 230-335 (365)
211 3c7x_A Matrix metalloproteinas 86.8 18 0.00063 33.8 15.3 101 81-219 15-128 (196)
212 3o4h_A Acylamino-acid-releasin 86.8 7.6 0.00026 42.4 14.6 96 103-222 134-231 (582)
213 3bg1_A Protein SEC13 homolog; 86.6 9.7 0.00033 37.8 14.2 30 306-349 273-303 (316)
214 3ju4_A Endo-N-acetylneuraminid 86.6 33 0.0011 35.8 17.5 215 110-338 269-512 (670)
215 3mmy_A MRNA export factor; mRN 86.1 27 0.00092 34.4 17.4 53 245-317 284-337 (368)
216 3ei3_B DNA damage-binding prot 85.9 10 0.00035 38.4 14.3 91 102-218 142-236 (383)
217 3o4h_A Acylamino-acid-releasin 85.7 43 0.0015 36.2 20.1 138 156-344 90-231 (582)
218 3ba0_A Macrophage metalloelast 85.6 12 0.00042 38.8 14.6 152 81-287 190-356 (365)
219 3mmy_A MRNA export factor; mRN 85.6 29 0.00099 34.1 18.8 105 82-221 54-163 (368)
220 3c5m_A Oligogalacturonate lyas 85.4 9.3 0.00032 38.7 13.6 113 101-227 216-338 (396)
221 3iuj_A Prolyl endopeptidase; h 85.0 54 0.0018 36.7 21.7 149 156-348 259-413 (693)
222 2fp8_A Strictosidine synthase; 85.0 32 0.0011 34.1 19.9 112 101-224 40-180 (322)
223 1yfq_A Cell cycle arrest prote 84.7 31 0.0011 33.7 19.1 144 72-257 60-217 (342)
224 3iz6_a 40S ribosomal protein R 84.2 28 0.00096 35.4 16.8 141 156-342 180-331 (380)
225 1su3_A Interstitial collagenas 83.9 22 0.00076 38.0 16.0 149 81-287 272-438 (450)
226 2xyi_A Probable histone-bindin 83.9 12 0.00041 39.0 14.0 63 134-218 243-309 (430)
227 3kci_A Probable E3 ubiquitin-p 83.9 26 0.0009 36.3 16.5 18 70-89 116-133 (389)
228 4d9s_A UVB-resistance protein 83.8 44 0.0015 34.7 19.1 16 127-142 131-147 (406)
229 3k26_A Polycomb protein EED; W 83.7 27 0.00092 34.4 16.1 97 135-257 85-184 (366)
230 1pby_B Quinohemoprotein amine 83.1 35 0.0012 33.1 19.7 87 72-170 37-129 (337)
231 1yiq_A Quinohemoprotein alcoho 83.0 13 0.00045 42.0 14.6 126 185-346 66-200 (689)
232 3ba0_A Macrophage metalloelast 82.9 21 0.0007 37.1 14.9 154 129-345 185-355 (365)
233 1w6s_A Methanol dehydrogenase 82.9 26 0.00087 39.0 16.6 124 130-288 58-200 (599)
234 1xfd_A DIP, dipeptidyl aminope 82.5 30 0.001 38.4 17.4 113 102-227 38-152 (723)
235 2mad_H Methylamine dehydrogena 82.4 48 0.0016 34.1 24.9 74 245-344 278-354 (373)
236 1su3_A Interstitial collagenas 82.2 13 0.00043 39.9 13.2 153 129-345 267-437 (450)
237 1hxn_A Hemopexin, HPX; heme, b 81.3 15 0.00052 35.1 12.2 101 81-218 28-144 (219)
238 3dw8_B Serine/threonine-protei 81.0 50 0.0017 33.8 17.4 32 70-112 30-61 (447)
239 1xfd_A DIP, dipeptidyl aminope 80.6 30 0.001 38.5 16.5 88 72-173 64-151 (723)
240 2hz6_A Endoplasmic reticulum t 80.5 1.1 3.8E-05 46.5 4.1 103 81-223 9-118 (369)
241 3oyo_A Hemopexin fold protein 80.3 6.7 0.00023 37.8 9.3 96 133-254 69-189 (225)
242 2p4o_A Hypothetical protein; p 80.1 47 0.0016 32.6 20.4 117 71-218 74-198 (306)
243 2gop_A Trilobed protease; beta 80.0 48 0.0017 32.6 17.3 194 99-347 41-258 (347)
244 3hxj_A Pyrrolo-quinoline quino 79.8 47 0.0016 32.3 18.2 89 102-224 118-211 (330)
245 3gre_A Serine/threonine-protei 79.7 58 0.002 33.3 18.3 67 81-169 181-249 (437)
246 1gen_A Gelatinase A; hydrolase 78.8 19 0.00066 34.3 12.0 103 81-220 87-204 (218)
247 2oaj_A Protein SNI1; WD40 repe 78.7 97 0.0033 35.9 20.5 110 72-221 21-132 (902)
248 2ymu_A WD-40 repeat protein; u 78.7 73 0.0025 33.9 19.7 187 74-342 350-541 (577)
249 3hxj_A Pyrrolo-quinoline quino 78.3 25 0.00084 34.5 13.4 90 103-224 80-173 (330)
250 3dr2_A Exported gluconolactona 77.2 42 0.0014 32.8 14.7 103 156-288 169-274 (305)
251 2ghs_A AGR_C_1268P; regucalcin 76.2 64 0.0022 32.0 21.1 96 102-217 110-209 (326)
252 3lrv_A PRE-mRNA-splicing facto 75.9 65 0.0022 31.9 19.3 102 82-220 139-246 (343)
253 2fp8_A Strictosidine synthase; 75.9 64 0.0022 31.8 21.5 216 72-340 83-313 (322)
254 4ggc_A P55CDC, cell division c 75.8 58 0.002 31.2 17.5 81 101-198 45-127 (318)
255 3c7x_A Matrix metalloproteinas 75.3 19 0.00065 33.7 10.7 102 81-220 61-177 (196)
256 1jmx_B Amine dehydrogenase; ox 74.3 14 0.00047 36.5 10.2 69 189-287 10-80 (349)
257 3k26_A Polycomb protein EED; W 73.5 71 0.0024 31.2 16.9 106 190-341 85-193 (366)
258 3mvd_K Regulator of chromosome 73.3 91 0.0031 32.3 17.2 18 237-254 303-321 (423)
259 3dw8_B Serine/threonine-protei 73.0 85 0.0029 31.9 20.4 28 245-288 353-380 (447)
260 3of7_A Regulator of chromosome 71.2 1.1E+02 0.0038 32.4 18.2 18 70-89 157-174 (473)
261 1k32_A Tricorn protease; prote 71.0 52 0.0018 38.8 15.7 148 102-287 318-467 (1045)
262 3m0c_C LDL receptor, low-densi 71.0 1.5E+02 0.0052 33.9 25.3 196 72-341 427-633 (791)
263 2xzm_R RACK1; ribosome, transl 70.3 88 0.003 30.9 18.4 62 134-218 87-149 (343)
264 3frx_A Guanine nucleotide-bind 70.1 86 0.0029 30.7 20.4 143 81-283 76-229 (319)
265 1npe_A Nidogen, entactin; glyc 69.5 78 0.0027 30.0 22.7 159 72-287 82-244 (267)
266 2p9w_A MAL S 1 allergenic prot 68.3 90 0.0031 31.8 14.4 148 73-257 141-307 (334)
267 2xzm_R RACK1; ribosome, transl 68.2 97 0.0033 30.6 18.7 61 81-166 87-150 (343)
268 3oyo_A Hemopexin fold protein 67.4 41 0.0014 32.2 11.2 101 81-217 70-197 (225)
269 3lp9_A LS-24; SEED albumin, pl 66.7 4.3 0.00015 39.3 4.0 61 134-219 129-202 (227)
270 4a5s_A Dipeptidyl peptidase 4 65.3 1.7E+02 0.0057 32.8 17.8 81 74-173 67-149 (740)
271 3frx_A Guanine nucleotide-bind 64.9 1.1E+02 0.0037 29.9 19.5 53 156-220 176-229 (319)
272 2ece_A 462AA long hypothetical 64.7 1.5E+02 0.0051 31.5 17.5 73 81-168 95-176 (462)
273 2ymu_A WD-40 repeat protein; u 64.6 1.5E+02 0.0051 31.4 21.2 174 102-346 285-463 (577)
274 1n7d_A LDL receptor, low-densi 62.8 47 0.0016 37.5 12.4 200 70-342 407-616 (699)
275 1k32_A Tricorn protease; prote 61.3 2.5E+02 0.0084 32.9 21.5 112 102-226 34-151 (1045)
276 1nr0_A Actin interacting prote 61.2 1.9E+02 0.0063 31.4 22.4 180 102-344 171-359 (611)
277 1flg_A Protein (quinoprotein e 60.1 63 0.0022 35.5 12.6 124 185-345 64-200 (582)
278 1hxn_A Hemopexin, HPX; heme, b 59.9 1.2E+02 0.0041 28.8 13.3 59 133-217 27-89 (219)
279 3hrp_A Uncharacterized protein 58.8 1.7E+02 0.0058 30.2 18.0 150 134-341 141-299 (409)
280 2hz6_A Endoplasmic reticulum t 58.2 3.3 0.00011 42.9 1.6 52 156-222 19-74 (369)
281 2xe4_A Oligopeptidase B; hydro 58.1 2.3E+02 0.0078 31.9 17.2 98 155-279 294-398 (751)
282 2xe4_A Oligopeptidase B; hydro 55.7 2.6E+02 0.009 31.4 17.6 98 100-216 294-398 (751)
283 1z68_A Fibroblast activation p 55.5 70 0.0024 35.5 12.2 80 72-173 63-147 (719)
284 1jof_A Carboxy-CIS,CIS-muconat 55.4 1.7E+02 0.0058 29.1 18.9 16 101-116 167-183 (365)
285 1ijq_A LDL receptor, low-densi 54.6 1.7E+02 0.0057 28.8 26.3 201 69-342 30-240 (316)
286 2p9w_A MAL S 1 allergenic prot 53.5 1.9E+02 0.0066 29.3 22.5 202 101-349 35-272 (334)
287 3lp9_A LS-24; SEED albumin, pl 53.4 31 0.001 33.1 7.5 63 133-219 71-148 (227)
288 2gop_A Trilobed protease; beta 52.8 1.7E+02 0.0058 28.4 20.0 106 101-226 152-259 (347)
289 3v64_C Agrin; beta propeller, 52.4 1.9E+02 0.0066 28.9 26.1 195 72-341 76-276 (349)
290 3v65_B Low-density lipoprotein 52.0 2.1E+02 0.0071 29.2 25.1 174 101-340 96-277 (386)
291 3v65_B Low-density lipoprotein 51.0 2.2E+02 0.0074 29.0 26.8 201 72-347 119-326 (386)
292 1nr0_A Actin interacting prote 49.7 2.8E+02 0.0095 30.0 21.4 161 73-287 195-361 (611)
293 1ijq_A LDL receptor, low-densi 49.4 2E+02 0.0069 28.2 28.6 174 101-340 10-195 (316)
294 1ck7_A Protein (gelatinase A); 47.3 89 0.0031 34.8 10.9 101 81-219 453-567 (631)
295 3sjl_D Methylamine dehydrogena 46.9 1.3E+02 0.0046 31.1 11.7 126 134-286 44-174 (386)
296 3p5b_L Low density lipoprotein 45.9 2.6E+02 0.009 28.6 24.7 198 70-341 113-321 (400)
297 1z68_A Fibroblast activation p 44.6 3.5E+02 0.012 29.6 17.3 18 209-226 337-354 (719)
298 2mad_H Methylamine dehydrogena 43.3 2.8E+02 0.0095 28.1 18.4 76 189-287 278-356 (373)
299 3kci_A Probable E3 ubiquitin-p 43.2 2.8E+02 0.0097 28.2 17.8 16 127-142 117-133 (389)
300 3m0c_C LDL receptor, low-densi 41.3 4.5E+02 0.015 29.9 28.8 174 102-341 405-590 (791)
301 1ck7_A Protein (gelatinase A); 37.4 56 0.0019 36.4 7.3 62 134-219 548-616 (631)
302 1n7d_A LDL receptor, low-densi 37.1 1.8E+02 0.0063 32.5 11.8 139 101-284 475-617 (699)
303 2be1_A Serine/threonine-protei 34.4 1.2E+02 0.004 30.9 8.7 108 156-287 20-138 (339)
304 3ju4_A Endo-N-acetylneuraminid 33.6 4.4E+02 0.015 27.6 17.9 130 57-198 272-406 (670)
305 3vu4_A KMHSV2; beta-propeller 33.2 3.6E+02 0.012 26.5 19.3 60 134-219 70-129 (355)
306 2iu1_A EIF5, eukaryotic transl 33.1 15 0.0005 35.0 1.4 8 506-513 149-156 (208)
307 1ofz_A Fucose-specific lectin; 32.8 3.8E+02 0.013 26.7 16.6 118 113-251 153-279 (312)
308 3k6s_A Integrin alpha-X; cell 31.9 5.9E+02 0.02 30.2 15.4 160 68-244 333-509 (1095)
309 4a5s_A Dipeptidyl peptidase 4 31.9 1.8E+02 0.0063 32.4 10.8 70 156-226 36-109 (740)
310 4aco_A Centromere DNA-binding 31.7 9.8 0.00034 43.0 0.0 8 220-227 317-324 (956)
311 1sqj_A OXG-RCBH, oligoxylogluc 31.6 6.1E+02 0.021 28.6 24.2 188 69-289 64-277 (789)
312 2j04_A TAU60, YPL007P, hypothe 31.5 5.5E+02 0.019 28.1 17.6 65 134-220 96-162 (588)
313 4hvt_A Ritya.17583.B, post-pro 31.1 5.6E+02 0.019 28.7 14.5 153 156-348 269-437 (711)
314 4a0p_A LRP6, LRP-6, low-densit 30.9 5.6E+02 0.019 28.0 25.4 195 69-341 37-238 (628)
315 2j04_A TAU60, YPL007P, hypothe 30.6 5.7E+02 0.019 28.0 20.4 182 73-317 90-289 (588)
316 3mvd_K Regulator of chromosome 28.5 4.9E+02 0.017 26.5 18.1 17 298-314 303-320 (423)
317 3a0f_A Xyloglucanase; beta-pro 27.6 6.9E+02 0.024 28.0 22.1 208 58-313 54-329 (763)
318 3tc9_A Hypothetical hydrolase; 27.3 5.3E+02 0.018 26.5 12.8 154 72-278 140-298 (430)
319 2cn3_A Xyloglucanase, beta-1,4 26.9 6.9E+02 0.024 27.8 18.6 87 165-254 231-322 (737)
320 1ofz_A Fucose-specific lectin; 26.1 5E+02 0.017 25.8 16.2 171 104-313 90-280 (312)
321 1a12_A RCC1, regulator of chro 25.4 5.5E+02 0.019 26.1 21.3 18 70-89 120-137 (413)
322 4hvt_A Ritya.17583.B, post-pro 24.6 7.7E+02 0.026 27.5 16.5 106 101-222 269-385 (711)
323 2oit_A Nucleoporin 214KDA; NH2 23.2 6.2E+02 0.021 25.9 18.1 59 135-217 162-222 (434)
324 2oiz_A Aromatic amine dehydrog 23.1 5.6E+02 0.019 25.4 15.1 109 156-285 31-144 (361)
325 2oit_A Nucleoporin 214KDA; NH2 22.5 6.3E+02 0.022 25.8 17.7 61 190-281 162-223 (434)
326 3v64_C Agrin; beta propeller, 21.9 5.9E+02 0.02 25.2 26.6 174 101-340 53-234 (349)
327 3of7_A Regulator of chromosome 20.5 7.3E+02 0.025 25.8 14.4 18 70-89 76-93 (473)
328 3p5b_L Low density lipoprotein 20.4 6.8E+02 0.023 25.3 28.3 175 101-341 92-278 (400)
329 2be1_A Serine/threonine-protei 20.3 2.5E+02 0.0085 28.5 8.1 101 209-342 20-132 (339)
330 4aco_A Centromere DNA-binding 20.0 22 0.00075 40.3 0.0 12 477-488 613-624 (956)
No 1
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=7.8e-44 Score=372.22 Aligned_cols=290 Identities=18% Similarity=0.260 Sum_probs=241.8
Q ss_pred CCCCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeC
Q 006384 63 VPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGG 142 (647)
Q Consensus 63 ~~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG 142 (647)
.+.|.+|..|+++.+ ++.||||||. ++ ..++++++||+.+++|..++. +|.+|.+|+++++++.||||||
T Consensus 9 ~~~~~~~~~~~~~~~---~~~i~v~GG~--~~---~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~lyv~GG 78 (308)
T 1zgk_A 9 HSSGLVPRGSHAPKV---GRLIYTAGGY--FR---QSLSYLEAYNPSNGTWLRLAD--LQVPRSGLAGCVVGGLLYAVGG 78 (308)
T ss_dssp ------------CCC---CCCEEEECCB--SS---SBCCCEEEEETTTTEEEECCC--CSSCCBSCEEEEETTEEEEECC
T ss_pred ccCCeeeCCccccCC---CCEEEEEeCc--CC---CCcceEEEEcCCCCeEeECCC--CCcccccceEEEECCEEEEECC
Confidence 456788999999988 8999999996 22 367899999999999999965 5789999999999999999999
Q ss_pred CcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceE
Q 006384 143 EFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ 222 (647)
Q Consensus 143 ~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~ 222 (647)
....... ...++++|+||+.+++|+.+++ +|.+|.+|++++++++||||||.... ..++++++||+.+++|+
T Consensus 79 ~~~~~~~--~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~yd~~~~~W~ 150 (308)
T 1zgk_A 79 RNNSPDG--NTDSSALDCYNPMTNQWSPCAP--MSVPRNRIGVGVIDGHIYAVGGSHGC----IHHNSVERYEPERDEWH 150 (308)
T ss_dssp EEEETTE--EEECCCEEEEETTTTEEEECCC--CSSCCBTCEEEEETTEEEEECCEETT----EECCCEEEEETTTTEEE
T ss_pred CcCCCCC--CeecceEEEECCCCCeEeECCC--CCcCccccEEEEECCEEEEEcCCCCC----cccccEEEECCCCCeEe
Confidence 7421111 2357899999999999999987 88999999999999999999998652 36899999999999999
Q ss_pred EeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEE
Q 006384 223 EIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSM 302 (647)
Q Consensus 223 ~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~ 302 (647)
.++++ |.+|.+|++++++++|||+||.... ..++++++||+.+++|+.+..+ |.+|.+|++
T Consensus 151 ~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~-----------~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~ 211 (308)
T 1zgk_A 151 LVAPM-----LTRRIGVGVAVLNRLLYAVGGFDGT-----------NRLNSAECYYPERNEWRMITAM---NTIRSGAGV 211 (308)
T ss_dssp ECCCC-----SSCCBSCEEEEETTEEEEECCBCSS-----------CBCCCEEEEETTTTEEEECCCC---SSCCBSCEE
T ss_pred ECCCC-----CccccceEEEEECCEEEEEeCCCCC-----------CcCceEEEEeCCCCeEeeCCCC---CCccccceE
Confidence 99877 8899999999999999999998765 3478999999999999999754 889999999
Q ss_pred EEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhh
Q 006384 303 CVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEE 382 (647)
Q Consensus 303 ~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (647)
++++++||||||... ...++++++||+.+++|+.+..
T Consensus 212 ~~~~~~iyv~GG~~~---------~~~~~~v~~yd~~~~~W~~~~~---------------------------------- 248 (308)
T 1zgk_A 212 CVLHNCIYAAGGYDG---------QDQLNSVERYDVETETWTFVAP---------------------------------- 248 (308)
T ss_dssp EEETTEEEEECCBCS---------SSBCCCEEEEETTTTEEEECCC----------------------------------
T ss_pred EEECCEEEEEeCCCC---------CCccceEEEEeCCCCcEEECCC----------------------------------
Confidence 999999999999864 2347999999999999998764
Q ss_pred cccCcccchhhhhhhhhhcccccccccccCCcceeecCceeeeecCCCCCcccccccccccCCCCCcCCccccccceeee
Q 006384 383 FDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVG 462 (647)
Q Consensus 383 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~ 462 (647)
+|.+|..|++++.
T Consensus 249 -------------------------------------------------------------------~p~~r~~~~~~~~ 261 (308)
T 1zgk_A 249 -------------------------------------------------------------------MKHRRSALGITVH 261 (308)
T ss_dssp -------------------------------------------------------------------CSSCCBSCEEEEE
T ss_pred -------------------------------------------------------------------CCCCccceEEEEE
Confidence 6899999999999
Q ss_pred cCeEEEecceEeecCeEEeecceeccccCCccceEEeccCCc
Q 006384 463 KDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCIIPASE 504 (647)
Q Consensus 463 ~~~Lyi~GG~~e~g~~e~tl~D~~~ldl~~~d~w~~~~~~~~ 504 (647)
++.|||+||... ...++++|.||+.+ ++|+.+.+...
T Consensus 262 ~~~i~v~GG~~~----~~~~~~v~~yd~~~-~~W~~~~~~p~ 298 (308)
T 1zgk_A 262 QGRIYVLGGYDG----HTFLDSVECYDPDT-DTWSEVTRMTS 298 (308)
T ss_dssp TTEEEEECCBCS----SCBCCEEEEEETTT-TEEEEEEECSS
T ss_pred CCEEEEEcCcCC----CcccceEEEEcCCC-CEEeecCCCCC
Confidence 999999999743 23589999999999 99999866543
No 2
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=2.5e-42 Score=359.90 Aligned_cols=272 Identities=17% Similarity=0.238 Sum_probs=237.5
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~ 160 (647)
.+.||||||.. . .+++++||+.+++|..+++ +|.+|.+|+++++++.||||||.. . ..++++++
T Consensus 11 ~~~l~~~GG~~--~-----~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~lyv~GG~~-~------~~~~~~~~ 74 (306)
T 3ii7_A 11 HDYRIALFGGS--Q-----PQSCRYFNPKDYSWTDIRC--PFEKRRDAACVFWDNVVYILGGSQ-L------FPIKRMDC 74 (306)
T ss_dssp CCEEEEEECCS--S-----TTSEEEEETTTTEEEECCC--CSCCCBSCEEEEETTEEEEECCBS-S------SBCCEEEE
T ss_pred cceEEEEeCCC--C-----CceEEEecCCCCCEecCCC--CCcccceeEEEEECCEEEEEeCCC-C------CCcceEEE
Confidence 47999999942 1 6899999999999999976 478999999999999999999986 1 25799999
Q ss_pred EECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeee
Q 006384 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240 (647)
Q Consensus 161 yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s 240 (647)
||+.+++|..++. +|.+|.+|++++++++||||||.... ...++++++||+.+++|+.++++ |.+|.+|+
T Consensus 75 ~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~~~d~~~~~W~~~~~~-----p~~r~~~~ 144 (306)
T 3ii7_A 75 YNVVKDSWYSKLG--PPTPRDSLAACAAEGKIYTSGGSEVG---NSALYLFECYDTRTESWHTKPSM-----LTQRCSHG 144 (306)
T ss_dssp EETTTTEEEEEEC--CSSCCBSCEEEEETTEEEEECCBBTT---BSCCCCEEEEETTTTEEEEECCC-----SSCCBSCE
T ss_pred EeCCCCeEEECCC--CCccccceeEEEECCEEEEECCCCCC---CcEeeeEEEEeCCCCceEeCCCC-----cCCcceeE
Confidence 9999999999987 89999999999999999999998632 33689999999999999999877 88999999
Q ss_pred EEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceecccc
Q 006384 241 FFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEM 320 (647)
Q Consensus 241 ~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~ 320 (647)
+++++++|||+||.... ...+..++++++||+.+++|+.+.++ |.+|.+|++++++++||||||...
T Consensus 145 ~~~~~~~iyv~GG~~~~-------~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~i~v~GG~~~--- 211 (306)
T 3ii7_A 145 MVEANGLIYVCGGSLGN-------NVSGRVLNSCEVYDPATETWTELCPM---IEARKNHGLVFVKDKIFAVGGQNG--- 211 (306)
T ss_dssp EEEETTEEEEECCEESC-------TTTCEECCCEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEECCEET---
T ss_pred EEEECCEEEEECCCCCC-------CCcccccceEEEeCCCCCeEEECCCc---cchhhcceEEEECCEEEEEeCCCC---
Confidence 99999999999998755 11123588999999999999999754 889999999999999999999875
Q ss_pred CccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhh
Q 006384 321 KGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADE 400 (647)
Q Consensus 321 ~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 400 (647)
...++++++||+.+++|+.+..
T Consensus 212 ------~~~~~~~~~yd~~~~~W~~~~~---------------------------------------------------- 233 (306)
T 3ii7_A 212 ------LGGLDNVEYYDIKLNEWKMVSP---------------------------------------------------- 233 (306)
T ss_dssp ------TEEBCCEEEEETTTTEEEECCC----------------------------------------------------
T ss_pred ------CCCCceEEEeeCCCCcEEECCC----------------------------------------------------
Confidence 2357899999999999998754
Q ss_pred cccccccccccCCcceeecCceeeeecCCCCCcccccccccccCCCCCcCCccccccceeeecCeEEEecceEeecCeEE
Q 006384 401 MESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEI 480 (647)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~g~~e~ 480 (647)
+|.+|..|++++.++.|||+||....+
T Consensus 234 -------------------------------------------------~p~~r~~~~~~~~~~~i~v~GG~~~~~---- 260 (306)
T 3ii7_A 234 -------------------------------------------------MPWKGVTVKCAAVGSIVYVLAGFQGVG---- 260 (306)
T ss_dssp -------------------------------------------------CSCCBSCCEEEEETTEEEEEECBCSSS----
T ss_pred -------------------------------------------------CCCCccceeEEEECCEEEEEeCcCCCe----
Confidence 689999999999999999999985332
Q ss_pred eecceeccccCCccceEEeccCC
Q 006384 481 TLDDLYSLNLSKLDEWKCIIPAS 503 (647)
Q Consensus 481 tl~D~~~ldl~~~d~w~~~~~~~ 503 (647)
.++++|.||+.+ ++|+.+.+..
T Consensus 261 ~~~~~~~yd~~~-~~W~~~~~~~ 282 (306)
T 3ii7_A 261 RLGHILEYNTET-DKWVANSKVR 282 (306)
T ss_dssp BCCEEEEEETTT-TEEEEEEEEE
T ss_pred eeeeEEEEcCCC-CeEEeCCCcc
Confidence 589999999999 9999986554
No 3
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=3.8e-42 Score=357.75 Aligned_cols=269 Identities=18% Similarity=0.295 Sum_probs=236.4
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~ 160 (647)
++.||||||.. . ..++++++||+.+++|..++. +|.+|.+|++++++++||||||.... ..++++|+
T Consensus 15 ~~~i~v~GG~~--~---~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~lyv~GG~~~~------~~~~~~~~ 81 (302)
T 2xn4_A 15 PKLMVVVGGQA--P---KAIRSVECYDFKEERWHQVAE--LPSRRCRAGMVYMAGLVFAVGGFNGS------LRVRTVDS 81 (302)
T ss_dssp CEEEEEECCBS--S---SBCCCEEEEETTTTEEEEECC--CSSCCBSCEEEEETTEEEEESCBCSS------SBCCCEEE
T ss_pred CCEEEEECCCC--C---CCCCcEEEEcCcCCcEeEccc--CCcccccceEEEECCEEEEEeCcCCC------ccccceEE
Confidence 68999999952 2 256899999999999999975 57899999999999999999997643 24689999
Q ss_pred EECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeee
Q 006384 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240 (647)
Q Consensus 161 yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s 240 (647)
||+.+++|+.++. +|.+|.+|++++++++||||||.... ..++++++||+.+++|+.++++ |.+|.+|+
T Consensus 82 ~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~~d~~~~~W~~~~~~-----p~~r~~~~ 150 (302)
T 2xn4_A 82 YDPVKDQWTSVAN--MRDRRSTLGAAVLNGLLYAVGGFDGS----TGLSSVEAYNIKSNEWFHVAPM-----NTRRSSVG 150 (302)
T ss_dssp EETTTTEEEEECC--CSSCCBSCEEEEETTEEEEEEEECSS----CEEEEEEEEETTTTEEEEECCC-----SSCCBSCE
T ss_pred ECCCCCceeeCCC--CCccccceEEEEECCEEEEEcCCCCC----ccCceEEEEeCCCCeEeecCCC-----CCcccCce
Confidence 9999999999987 89999999999999999999998643 3589999999999999999887 88999999
Q ss_pred EEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceecccc
Q 006384 241 FFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEM 320 (647)
Q Consensus 241 ~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~ 320 (647)
+++++++|||+||.... ....++++++||+.+++|+.+..+ |.+|.+|++++++++||||||...
T Consensus 151 ~~~~~~~iyv~GG~~~~---------~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~--- 215 (302)
T 2xn4_A 151 VGVVGGLLYAVGGYDVA---------SRQCLSTVECYNATTNEWTYIAEM---STRRSGAGVGVLNNLLYAVGGHDG--- 215 (302)
T ss_dssp EEEETTEEEEECCEETT---------TTEECCCEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEECCBSS---
T ss_pred EEEECCEEEEEeCCCCC---------CCccccEEEEEeCCCCcEEECCCC---ccccccccEEEECCEEEEECCCCC---
Confidence 99999999999998654 124578999999999999999654 889999999999999999999764
Q ss_pred CccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhh
Q 006384 321 KGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADE 400 (647)
Q Consensus 321 ~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 400 (647)
....+++++||+.+++|+.+..
T Consensus 216 ------~~~~~~~~~yd~~~~~W~~~~~---------------------------------------------------- 237 (302)
T 2xn4_A 216 ------PLVRKSVEVYDPTTNAWRQVAD---------------------------------------------------- 237 (302)
T ss_dssp ------SSBCCCEEEEETTTTEEEEECC----------------------------------------------------
T ss_pred ------CcccceEEEEeCCCCCEeeCCC----------------------------------------------------
Confidence 3457899999999999998765
Q ss_pred cccccccccccCCcceeecCceeeeecCCCCCcccccccccccCCCCCcCCccccccceeeecCeEEEecceEeecCeEE
Q 006384 401 MESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEI 480 (647)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~g~~e~ 480 (647)
+|.+|.+|++++.++.|||+||.... .
T Consensus 238 -------------------------------------------------~~~~r~~~~~~~~~~~i~v~GG~~~~----~ 264 (302)
T 2xn4_A 238 -------------------------------------------------MNMCRRNAGVCAVNGLLYVVGGDDGS----C 264 (302)
T ss_dssp -------------------------------------------------CSSCCBSCEEEEETTEEEEECCBCSS----S
T ss_pred -------------------------------------------------CCCccccCeEEEECCEEEEECCcCCC----c
Confidence 68899999999999999999997532 2
Q ss_pred eecceeccccCCccceEEec
Q 006384 481 TLDDLYSLNLSKLDEWKCII 500 (647)
Q Consensus 481 tl~D~~~ldl~~~d~w~~~~ 500 (647)
.++++|.||+.+ ++|+.+.
T Consensus 265 ~~~~v~~yd~~~-~~W~~~~ 283 (302)
T 2xn4_A 265 NLASVEYYNPTT-DKWTVVS 283 (302)
T ss_dssp BCCCEEEEETTT-TEEEECS
T ss_pred ccccEEEEcCCC-CeEEECC
Confidence 489999999999 9999986
No 4
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=2.2e-42 Score=368.22 Aligned_cols=305 Identities=19% Similarity=0.252 Sum_probs=240.1
Q ss_pred cCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECC--CCeEEEecCCCCC-CCcceeEEEEECCEE
Q 006384 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVE--KQEWKVISSPNSP-PPRSAHQAVSWKNYL 137 (647)
Q Consensus 61 ~~~~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~--~~~W~~l~s~~~P-~~R~~ha~v~~~~~i 137 (647)
..+++|.+|.+|+++++ +++||||||.. .+++|+||+. +++|+.+++ +| .+|.+|++++++++|
T Consensus 2 ~l~~lP~~r~~~~~~~~---~~~iyv~GG~~--------~~~~~~~d~~~~~~~W~~~~~--~p~~~R~~~~~~~~~~~l 68 (357)
T 2uvk_A 2 VLPETPVPFKSGTGAID---NDTVYIGLGSA--------GTAWYKLDTQAKDKKWTALAA--FPGGPRDQATSAFIDGNL 68 (357)
T ss_dssp CSCCCSSCCCSCEEEEE---TTEEEEECGGG--------TTCEEEEETTSSSCCEEECCC--CTTCCCBSCEEEEETTEE
T ss_pred CCCCCCccccceEEEEE---CCEEEEEeCcC--------CCeEEEEccccCCCCeeECCC--CCCCcCccceEEEECCEE
Confidence 45789999999999998 89999999952 2489999998 499999977 46 789999999999999
Q ss_pred EEEeCCcC-CCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCC-------------
Q 006384 138 YIFGGEFT-SPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLR------------- 203 (647)
Q Consensus 138 yv~GG~~~-~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~------------- 203 (647)
|||||... .... ...++++|+||+.+++|+.+++.+ |.+|.+|++++++++||||||......
T Consensus 69 yv~GG~~~~~~~~--~~~~~~v~~yd~~~~~W~~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~ 145 (357)
T 2uvk_A 69 YVFGGIGKNSEGL--TQVFNDVHKYNPKTNSWVKLMSHA-PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKD 145 (357)
T ss_dssp EEECCEEECTTSC--EEECCCEEEEETTTTEEEECSCCC-SSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTC
T ss_pred EEEcCCCCCCCcc--ceeeccEEEEeCCCCcEEECCCCC-CcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCc
Confidence 99999822 1111 346899999999999999998833 599999999999999999999753210
Q ss_pred -----------------ceeeeCcEEEEEcCCCceEEeccCCCCCCCCC-ceeeeEEEeCCEEEEEecccCCCCCcccCC
Q 006384 204 -----------------EVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSP-RSGFQFFVYQDEVFLYGGYSKEVSTDKNQS 265 (647)
Q Consensus 204 -----------------~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~-R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~ 265 (647)
...+++++++||+.+++|+.+.++ |.+ |.+|++++++++||||||....
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~-----p~~~~~~~~~~~~~~~iyv~GG~~~~-------- 212 (357)
T 2uvk_A 146 STAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGES-----PWYGTAGAAVVNKGDKTWLINGEAKP-------- 212 (357)
T ss_dssp HHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEEC-----SSCCCBSCEEEEETTEEEEECCEEET--------
T ss_pred ccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCC-----CCCCcccccEEEECCEEEEEeeecCC--------
Confidence 002468999999999999999877 655 4559999999999999998754
Q ss_pred CCCceeeeEEEEeC--CCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCcc--------ccccccCCcEEE
Q 006384 266 EKGIIHSDLWSLDP--RTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGD--------VIMSLFLNELYG 335 (647)
Q Consensus 266 ~~~~~~~dv~~yd~--~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~--------~~~~~~~ndl~~ 335 (647)
+...+++++||+ .+++|+.+..+ ..|.+|.+|++++++++||||||......... ......++++++
T Consensus 213 --~~~~~~v~~~d~d~~~~~W~~~~~~-~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 289 (357)
T 2uvk_A 213 --GLRTDAVFELDFTGNNLKWNKLAPV-SSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDI 289 (357)
T ss_dssp --TEECCCEEEEECC---CEEEECCCS-STTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEE
T ss_pred --CcccCceEEEEecCCCCcEEecCCC-CCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEE
Confidence 356788999986 99999999775 23455778999999999999999864221000 000123478999
Q ss_pred EECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhhcccccccccccCCcc
Q 006384 336 FQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNS 415 (647)
Q Consensus 336 yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (647)
||+.+++|+.+..
T Consensus 290 yd~~~~~W~~~~~------------------------------------------------------------------- 302 (357)
T 2uvk_A 290 HLWHNGKWDKSGE------------------------------------------------------------------- 302 (357)
T ss_dssp EECC---CEEEEE-------------------------------------------------------------------
T ss_pred EecCCCceeeCCC-------------------------------------------------------------------
Confidence 9999999999865
Q ss_pred eeecCceeeeecCCCCCcccccccccccCCCCCcCCccccccceeeecCeEEEecceEeecCeEEeecceeccccCCccc
Q 006384 416 VIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDE 495 (647)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~g~~e~tl~D~~~ldl~~~d~ 495 (647)
+|.+|.+|++++.+++||||||....+ ..++|+|.|+++. ++
T Consensus 303 ----------------------------------~p~~r~~~~~~~~~~~i~v~GG~~~~~---~~~~~v~~l~~~~-~~ 344 (357)
T 2uvk_A 303 ----------------------------------LSQGRAYGVSLPWNNSLLIIGGETAGG---KAVTDSVLITVKD-NK 344 (357)
T ss_dssp ----------------------------------CSSCCBSSEEEEETTEEEEEEEECGGG---CEEEEEEEEEC-C-CS
T ss_pred ----------------------------------CCCCcccceeEEeCCEEEEEeeeCCCC---CEeeeEEEEEEcC-cE
Confidence 699999999999999999999987655 3489999999998 89
Q ss_pred eEEeccC
Q 006384 496 WKCIIPA 502 (647)
Q Consensus 496 w~~~~~~ 502 (647)
|.++.+.
T Consensus 345 ~~~~~~~ 351 (357)
T 2uvk_A 345 VTVQNLE 351 (357)
T ss_dssp CEEEC--
T ss_pred eEeeecc
Confidence 9887764
No 5
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.1e-41 Score=354.03 Aligned_cols=272 Identities=19% Similarity=0.324 Sum_probs=238.5
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~ 160 (647)
++.||||||.... ...++++++||+.+++|..++. +|.+|.+|+++.+++.||||||.... ..++++|+
T Consensus 14 ~~~i~~~GG~~~~---~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~l~v~GG~~~~------~~~~~~~~ 82 (301)
T 2vpj_A 14 NEVLLVVGGFGSQ---QSPIDVVEKYDPKTQEWSFLPS--ITRKRRYVASVSLHDRIYVIGGYDGR------SRLSSVEC 82 (301)
T ss_dssp CEEEEEECCEETT---TEECCCEEEEETTTTEEEECCC--CSSCCBSCEEEEETTEEEEECCBCSS------CBCCCEEE
T ss_pred CCEEEEEeCccCC---CcceeEEEEEcCCCCeEEeCCC--CChhhccccEEEECCEEEEEcCCCCC------ccCceEEE
Confidence 6899999994222 2468899999999999999976 56899999999999999999997632 25789999
Q ss_pred EECCCCc---EEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCce
Q 006384 161 LDLKTNQ---WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS 237 (647)
Q Consensus 161 yD~~t~~---W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~ 237 (647)
||+.+++ |+.++. +|.+|.+|++++++++||||||.... ..++++++||+.+++|+.++++ |.+|.
T Consensus 83 ~d~~~~~~~~W~~~~~--~p~~r~~~~~~~~~~~lyv~GG~~~~----~~~~~~~~~d~~~~~W~~~~~~-----p~~r~ 151 (301)
T 2vpj_A 83 LDYTADEDGVWYSVAP--MNVRRGLAGATTLGDMIYVSGGFDGS----RRHTSMERYDPNIDQWSMLGDM-----QTARE 151 (301)
T ss_dssp EETTCCTTCCCEEECC--CSSCCBSCEEEEETTEEEEECCBCSS----CBCCEEEEEETTTTEEEEEEEC-----SSCCB
T ss_pred EECCCCCCCeeEECCC--CCCCccceeEEEECCEEEEEcccCCC----cccceEEEEcCCCCeEEECCCC-----CCCcc
Confidence 9999999 999977 78999999999999999999998643 2478999999999999999887 88999
Q ss_pred eeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceec
Q 006384 238 GFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVD 317 (647)
Q Consensus 238 ~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~ 317 (647)
+|++++++++|||+||+... ..++++++||+.+++|+.+..+ |.+|.+|++++++++||||||...
T Consensus 152 ~~~~~~~~~~iyv~GG~~~~-----------~~~~~~~~~d~~~~~W~~~~~~---p~~r~~~~~~~~~~~i~v~GG~~~ 217 (301)
T 2vpj_A 152 GAGLVVASGVIYCLGGYDGL-----------NILNSVEKYDPHTGHWTNVTPM---ATKRSGAGVALLNDHIYVVGGFDG 217 (301)
T ss_dssp SCEEEEETTEEEEECCBCSS-----------CBCCCEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEECCBCS
T ss_pred cceEEEECCEEEEECCCCCC-----------cccceEEEEeCCCCcEEeCCCC---CcccccceEEEECCEEEEEeCCCC
Confidence 99999999999999998754 4678999999999999999654 889999999999999999999865
Q ss_pred cccCccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhh
Q 006384 318 MEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEE 397 (647)
Q Consensus 318 ~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 397 (647)
....+++++||+.+++|..+..
T Consensus 218 ---------~~~~~~v~~yd~~~~~W~~~~~------------------------------------------------- 239 (301)
T 2vpj_A 218 ---------TAHLSSVEAYNIRTDSWTTVTS------------------------------------------------- 239 (301)
T ss_dssp ---------SSBCCCEEEEETTTTEEEEECC-------------------------------------------------
T ss_pred ---------CcccceEEEEeCCCCcEEECCC-------------------------------------------------
Confidence 2347899999999999998754
Q ss_pred hhhcccccccccccCCcceeecCceeeeecCCCCCcccccccccccCCCCCcCCccccccceeeecCeEEEecceEeecC
Q 006384 398 ADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEIND 477 (647)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~g~ 477 (647)
+|.+|..|++++.++.|||+||....
T Consensus 240 ----------------------------------------------------~p~~r~~~~~~~~~~~i~v~GG~~~~-- 265 (301)
T 2vpj_A 240 ----------------------------------------------------MTTPRCYVGATVLRGRLYAIAGYDGN-- 265 (301)
T ss_dssp ----------------------------------------------------CSSCCBSCEEEEETTEEEEECCBCSS--
T ss_pred ----------------------------------------------------CCCcccceeEEEECCEEEEEcCcCCC--
Confidence 68999999999999999999997532
Q ss_pred eEEeecceeccccCCccceEEeccCC
Q 006384 478 QEITLDDLYSLNLSKLDEWKCIIPAS 503 (647)
Q Consensus 478 ~e~tl~D~~~ldl~~~d~w~~~~~~~ 503 (647)
..++++|.||+.+ ++|+.+.+..
T Consensus 266 --~~~~~v~~yd~~~-~~W~~~~~~~ 288 (301)
T 2vpj_A 266 --SLLSSIECYDPII-DSWEVVTSMG 288 (301)
T ss_dssp --SBEEEEEEEETTT-TEEEEEEEEE
T ss_pred --cccccEEEEcCCC-CeEEEcCCCC
Confidence 2579999999999 9999986544
No 6
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=4.3e-42 Score=359.97 Aligned_cols=278 Identities=22% Similarity=0.392 Sum_probs=235.2
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~ 160 (647)
.+.|||||| +++++||+.+++|.. ++++.|.+|.+|+++++++.|||+||.............+++|+
T Consensus 4 ~~~l~~~GG-----------~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~ 71 (315)
T 4asc_A 4 QDLIFMISE-----------EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQ 71 (315)
T ss_dssp EEEEEEEET-----------TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEE
T ss_pred ceEEEEEcC-----------CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEE
Confidence 468999999 489999999999997 54545779999999999999999999642211111234577999
Q ss_pred EECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeee
Q 006384 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240 (647)
Q Consensus 161 yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s 240 (647)
||+.+++|+.+++ +|.+|.+|++++++++||||||..... ....++++++||+.+++|+.++++ |.+|.+|+
T Consensus 72 ~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~~~~d~~~~~W~~~~~~-----p~~r~~~~ 143 (315)
T 4asc_A 72 FDHLDSEWLGMPP--LPSPRCLFGLGEALNSIYVVGGREIKD-GERCLDSVMCYDRLSFKWGESDPL-----PYVVYGHT 143 (315)
T ss_dssp EETTTTEEEECCC--BSSCEESCEEEEETTEEEEECCEESST-TCCBCCCEEEEETTTTEEEECCCC-----SSCCBSCE
T ss_pred ecCCCCeEEECCC--CCcchhceeEEEECCEEEEEeCCcCCC-CCcccceEEEECCCCCcEeECCCC-----CCccccee
Confidence 9999999999987 899999999999999999999975311 134689999999999999999877 88999999
Q ss_pred EEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceecccc
Q 006384 241 FFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEM 320 (647)
Q Consensus 241 ~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~ 320 (647)
+++++++|||+||.... ...++++++||+.+++|+.+.++ |.+|.+|++++++++||||||...
T Consensus 144 ~~~~~~~iyv~GG~~~~----------~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~--- 207 (315)
T 4asc_A 144 VLSHMDLVYVIGGKGSD----------RKCLNKMCVYDPKKFEWKELAPM---QTARSLFGATVHDGRIIVAAGVTD--- 207 (315)
T ss_dssp EEEETTEEEEECCBCTT----------SCBCCCEEEEETTTTEEEECCCC---SSCCBSCEEEEETTEEEEEEEECS---
T ss_pred EEEECCEEEEEeCCCCC----------CcccceEEEEeCCCCeEEECCCC---CCchhceEEEEECCEEEEEeccCC---
Confidence 99999999999998433 35688999999999999999764 889999999999999999999865
Q ss_pred CccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhh
Q 006384 321 KGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADE 400 (647)
Q Consensus 321 ~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 400 (647)
...++++++||+.+++|+.+..
T Consensus 208 ------~~~~~~~~~yd~~~~~W~~~~~---------------------------------------------------- 229 (315)
T 4asc_A 208 ------TGLTSSAEVYSITDNKWAPFEA---------------------------------------------------- 229 (315)
T ss_dssp ------SSEEEEEEEEETTTTEEEEECC----------------------------------------------------
T ss_pred ------CCccceEEEEECCCCeEEECCC----------------------------------------------------
Confidence 2357899999999999998865
Q ss_pred cccccccccccCCcceeecCceeeeecCCCCCcccccccccccCCCCCcCCccccccceeeecCeEEEecceEee----c
Q 006384 401 MESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEI----N 476 (647)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~----g 476 (647)
+|.+|..|++++.++.|||+||.... +
T Consensus 230 -------------------------------------------------~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~ 260 (315)
T 4asc_A 230 -------------------------------------------------FPQERSSLSLVSLVGTLYAIGGFATLETESG 260 (315)
T ss_dssp -------------------------------------------------CSSCCBSCEEEEETTEEEEEEEEEEEECTTS
T ss_pred -------------------------------------------------CCCcccceeEEEECCEEEEECCccccCcCCc
Confidence 69999999999999999999998653 1
Q ss_pred Ce-EEeecceeccccCCccceEEeccC
Q 006384 477 DQ-EITLDDLYSLNLSKLDEWKCIIPA 502 (647)
Q Consensus 477 ~~-e~tl~D~~~ldl~~~d~w~~~~~~ 502 (647)
.. ...++|+|.||+.+ ++|+.+.+.
T Consensus 261 ~~~~~~~~~v~~yd~~~-~~W~~~~~~ 286 (315)
T 4asc_A 261 ELVPTELNDIWRYNEEE-KKWEGVLRE 286 (315)
T ss_dssp CEEEEEEEEEEEEETTT-TEEEEEESC
T ss_pred cccccccCcEEEecCCC-ChhhhhccC
Confidence 11 14589999999999 999999544
No 7
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=1.3e-41 Score=356.88 Aligned_cols=285 Identities=21% Similarity=0.380 Sum_probs=234.8
Q ss_pred CCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcC
Q 006384 66 PSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFT 145 (647)
Q Consensus 66 P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~ 145 (647)
..||.++.. .+.||+|||. .+++||+.+++|... ++..|.+|.+|+++++++.||||||...
T Consensus 6 ~~~r~~~~~------~~~i~~~GG~-----------~~~~yd~~~~~W~~~-~~~~~~~r~~~~~~~~~~~lyv~GG~~~ 67 (318)
T 2woz_A 6 DIPRHGMFV------KDLILLVNDT-----------AAVAYDPMENECYLT-ALAEQIPRNHSSIVTQQNQVYVVGGLYV 67 (318)
T ss_dssp SSCCCCCSE------EEEEEEECSS-----------EEEEEETTTTEEEEE-EECTTSCSSEEEEECSSSCEEEEESSCC
T ss_pred cccccccee------cchhhhcccc-----------ceEEECCCCCceecc-cCCccCCccceEEEEECCEEEEECCccc
Confidence 345655433 3689999993 479999999999984 3445689999999999999999999642
Q ss_pred CCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEec
Q 006384 146 SPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (647)
Q Consensus 146 ~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (647)
..........+++|+||+.+++|..+++ +|.+|.+|++++++++||||||.... ....++++++||+.+++|+.++
T Consensus 68 ~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~--~~~~~~~~~~yd~~~~~W~~~~ 143 (318)
T 2woz_A 68 DEENKDQPLQSYFFQLDNVSSEWVGLPP--LPSARCLFGLGEVDDKIYVVAGKDLQ--TEASLDSVLCYDPVAAKWSEVK 143 (318)
T ss_dssp -------CCCBEEEEEETTTTEEEECSC--BSSCBCSCEEEEETTEEEEEEEEBTT--TCCEEEEEEEEETTTTEEEEEC
T ss_pred CccccCCCccccEEEEeCCCCcEEECCC--CCccccccceEEECCEEEEEcCccCC--CCcccceEEEEeCCCCCEeECC
Confidence 2111001234569999999999999987 89999999999999999999998632 1346899999999999999998
Q ss_pred cCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE
Q 006384 226 PRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (647)
Q Consensus 226 ~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~ 305 (647)
++ |.+|.+|++++++++|||+||.... ...++++++||+.+++|+.+..+ |.+|.+|+++++
T Consensus 144 ~~-----p~~r~~~~~~~~~~~iyv~GG~~~~----------~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~ 205 (318)
T 2woz_A 144 NL-----PIKVYGHNVISHNGMIYCLGGKTDD----------KKCTNRVFIYNPKKGDWKDLAPM---KTPRSMFGVAIH 205 (318)
T ss_dssp CC-----SSCEESCEEEEETTEEEEECCEESS----------SCBCCCEEEEETTTTEEEEECCC---SSCCBSCEEEEE
T ss_pred CC-----CCcccccEEEEECCEEEEEcCCCCC----------CCccceEEEEcCCCCEEEECCCC---CCCcccceEEEE
Confidence 77 8899999999999999999998644 35678999999999999999754 889999999999
Q ss_pred CCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhccc
Q 006384 306 KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDA 385 (647)
Q Consensus 306 ~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (647)
+++||||||... ....+++++||+.+++|+.+..
T Consensus 206 ~~~iyv~GG~~~---------~~~~~~~~~yd~~~~~W~~~~~------------------------------------- 239 (318)
T 2woz_A 206 KGKIVIAGGVTE---------DGLSASVEAFDLKTNKWEVMTE------------------------------------- 239 (318)
T ss_dssp TTEEEEEEEEET---------TEEEEEEEEEETTTCCEEECCC-------------------------------------
T ss_pred CCEEEEEcCcCC---------CCccceEEEEECCCCeEEECCC-------------------------------------
Confidence 999999999875 2357899999999999998754
Q ss_pred CcccchhhhhhhhhhcccccccccccCCcceeecCceeeeecCCCCCcccccccccccCCCCCcCCccccccceeeecCe
Q 006384 386 NEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDT 465 (647)
Q Consensus 386 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~ 465 (647)
+|.+|..|++++.++.
T Consensus 240 ----------------------------------------------------------------~p~~r~~~~~~~~~~~ 255 (318)
T 2woz_A 240 ----------------------------------------------------------------FPQERSSISLVSLAGS 255 (318)
T ss_dssp ----------------------------------------------------------------CSSCCBSCEEEEETTE
T ss_pred ----------------------------------------------------------------CCCcccceEEEEECCE
Confidence 6899999999999999
Q ss_pred EEEecceEeecC--e---EEeecceeccccCCccceEEecc
Q 006384 466 LYVYGGMMEIND--Q---EITLDDLYSLNLSKLDEWKCIIP 501 (647)
Q Consensus 466 Lyi~GG~~e~g~--~---e~tl~D~~~ldl~~~d~w~~~~~ 501 (647)
|||+||...... . ...++|+|.||+.+ ++|+.+.+
T Consensus 256 i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~-~~W~~~~~ 295 (318)
T 2woz_A 256 LYAIGGFAMIQLESKEFAPTEVNDIWKYEDDK-KEWAGMLK 295 (318)
T ss_dssp EEEECCBCCBC----CCBCCBCCCEEEEETTT-TEEEEEES
T ss_pred EEEECCeeccCCCCceeccceeeeEEEEeCCC-CEehhhcc
Confidence 999999854211 1 12489999999999 99999944
No 8
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=2.6e-41 Score=354.04 Aligned_cols=252 Identities=20% Similarity=0.373 Sum_probs=213.0
Q ss_pred CCCCCCCcceEEEEeccCCCEEEEEcCeecC--CCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEE
Q 006384 63 VPAPSPRSNCSLNINPLKETELILYGGEFYN--GNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIF 140 (647)
Q Consensus 63 ~~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~--g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~ 140 (647)
.+.|.+|.+|+++++ +++||||||...+ +......+++++||+.+++|+.+++ +|.+|.+|++++++++|||+
T Consensus 30 ~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~lyv~ 104 (315)
T 4asc_A 30 LSSQVPKNHVSLVTK---ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP--LPSPRCLFGLGEALNSIYVV 104 (315)
T ss_dssp CCCCSCSSEEEEECT---TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC--BSSCEESCEEEEETTEEEEE
T ss_pred CCCCCCccceEEEEE---CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC--CCcchhceeEEEECCEEEEE
Confidence 345789999999998 8999999997432 2233456789999999999999976 57899999999999999999
Q ss_pred eCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc
Q 006384 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (647)
Q Consensus 141 GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (647)
||...... ...++++|+||+.+++|+.+++ +|.+|.+|++++++++||||||.... ...++++++||+.+++
T Consensus 105 GG~~~~~~---~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~~yd~~~~~ 176 (315)
T 4asc_A 105 GGREIKDG---ERCLDSVMCYDRLSFKWGESDP--LPYVVYGHTVLSHMDLVYVIGGKGSD---RKCLNKMCVYDPKKFE 176 (315)
T ss_dssp CCEESSTT---CCBCCCEEEEETTTTEEEECCC--CSSCCBSCEEEEETTEEEEECCBCTT---SCBCCCEEEEETTTTE
T ss_pred eCCcCCCC---CcccceEEEECCCCCcEeECCC--CCCcccceeEEEECCEEEEEeCCCCC---CcccceEEEEeCCCCe
Confidence 99753211 1367999999999999999987 89999999999999999999998432 2368999999999999
Q ss_pred eEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceee
Q 006384 221 WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGF 300 (647)
Q Consensus 221 W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~ 300 (647)
|+.++++ |.+|.+|++++++++|||+||.... ...+++++||+.+++|+.+.. +|.+|.+|
T Consensus 177 W~~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~-----------~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~ 237 (315)
T 4asc_A 177 WKELAPM-----QTARSLFGATVHDGRIIVAAGVTDT-----------GLTSSAEVYSITDNKWAPFEA---FPQERSSL 237 (315)
T ss_dssp EEECCCC-----SSCCBSCEEEEETTEEEEEEEECSS-----------SEEEEEEEEETTTTEEEEECC---CSSCCBSC
T ss_pred EEECCCC-----CCchhceEEEEECCEEEEEeccCCC-----------CccceEEEEECCCCeEEECCC---CCCcccce
Confidence 9999877 8899999999999999999998765 467899999999999999975 48899999
Q ss_pred EEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEe
Q 006384 301 SMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPL 346 (647)
Q Consensus 301 s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l 346 (647)
++++++++||||||.+.............++++|+||+.+++|+.+
T Consensus 238 ~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 238 SLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred eEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 9999999999999986532111112235678999999999999977
No 9
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=8.2e-41 Score=350.73 Aligned_cols=263 Identities=16% Similarity=0.358 Sum_probs=214.8
Q ss_pred hhhhhcceEEEEeccCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCC--cceeeCcEEEEECCCCeEEEecCCCCCCC
Q 006384 47 IQKEEAKKKEVHVEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGN--KTYVYGDLYRYDVEKQEWKVISSPNSPPP 124 (647)
Q Consensus 47 ~~~~e~~~~~~~~~~~~~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~--~~~~~ndl~~yd~~~~~W~~l~s~~~P~~ 124 (647)
|.....+|... ..+.|.+|.+|+++++ ++.||||||...+.. .....+++++||+.+++|+.+++ +|.+
T Consensus 29 yd~~~~~W~~~----~~~~~~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~ 99 (318)
T 2woz_A 29 YDPMENECYLT----ALAEQIPRNHSSIVTQ---QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP--LPSA 99 (318)
T ss_dssp EETTTTEEEEE----EECTTSCSSEEEEECS---SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC--BSSC
T ss_pred ECCCCCceecc----cCCccCCccceEEEEE---CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC--CCcc
Confidence 44444455431 2345688999999988 899999999643221 12344569999999999999976 5789
Q ss_pred cceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCc
Q 006384 125 RSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLRE 204 (647)
Q Consensus 125 R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~ 204 (647)
|.+|++++++++|||+||...... ..++++|+||+.+++|+.+++ +|.+|.+|++++++++||||||....
T Consensus 100 r~~~~~~~~~~~iyv~GG~~~~~~----~~~~~~~~yd~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~--- 170 (318)
T 2woz_A 100 RCLFGLGEVDDKIYVVAGKDLQTE----ASLDSVLCYDPVAAKWSEVKN--LPIKVYGHNVISHNGMIYCLGGKTDD--- 170 (318)
T ss_dssp BCSCEEEEETTEEEEEEEEBTTTC----CEEEEEEEEETTTTEEEEECC--CSSCEESCEEEEETTEEEEECCEESS---
T ss_pred ccccceEEECCEEEEEcCccCCCC----cccceEEEEeCCCCCEeECCC--CCCcccccEEEEECCEEEEEcCCCCC---
Confidence 999999999999999999864222 257899999999999999987 89999999999999999999998643
Q ss_pred eeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeE
Q 006384 205 VRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW 284 (647)
Q Consensus 205 ~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W 284 (647)
...++++++||+.+++|+.++++ |.+|.+|++++++++|||+||.... ...+++++||+.+++|
T Consensus 171 ~~~~~~~~~yd~~~~~W~~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~-----------~~~~~~~~yd~~~~~W 234 (318)
T 2woz_A 171 KKCTNRVFIYNPKKGDWKDLAPM-----KTPRSMFGVAIHKGKIVIAGGVTED-----------GLSASVEAFDLKTNKW 234 (318)
T ss_dssp SCBCCCEEEEETTTTEEEEECCC-----SSCCBSCEEEEETTEEEEEEEEETT-----------EEEEEEEEEETTTCCE
T ss_pred CCccceEEEEcCCCCEEEECCCC-----CCCcccceEEEECCEEEEEcCcCCC-----------CccceEEEEECCCCeE
Confidence 23689999999999999999877 8899999999999999999998765 4678999999999999
Q ss_pred EEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEe
Q 006384 285 SKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPL 346 (647)
Q Consensus 285 ~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l 346 (647)
+.+.. +|.+|.+|++++++++||||||..........+.....+++|+||+.+++|+.+
T Consensus 235 ~~~~~---~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 235 EVMTE---FPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EECCC---CSSCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred EECCC---CCCcccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 99965 488999999999999999999986533222222235679999999999999987
No 10
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=4.8e-40 Score=342.58 Aligned_cols=243 Identities=19% Similarity=0.254 Sum_probs=215.2
Q ss_pred cCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEE
Q 006384 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIF 140 (647)
Q Consensus 61 ~~~~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~ 140 (647)
...++|.+|.+|+++++ +++||||||.. ...++++++||+.+++|+.+++ +|.+|.+|++++++++||||
T Consensus 38 ~~~~~p~~r~~~~~~~~---~~~lyv~GG~~-----~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~ 107 (306)
T 3ii7_A 38 DIRCPFEKRRDAACVFW---DNVVYILGGSQ-----LFPIKRMDCYNVVKDSWYSKLG--PPTPRDSLAACAAEGKIYTS 107 (306)
T ss_dssp ECCCCSCCCBSCEEEEE---TTEEEEECCBS-----SSBCCEEEEEETTTTEEEEEEC--CSSCCBSCEEEEETTEEEEE
T ss_pred cCCCCCcccceeEEEEE---CCEEEEEeCCC-----CCCcceEEEEeCCCCeEEECCC--CCccccceeEEEECCEEEEE
Confidence 44678999999999999 89999999963 3367899999999999999977 47899999999999999999
Q ss_pred eCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc
Q 006384 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (647)
Q Consensus 141 GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (647)
||.... ...++++++||+.+++|+.++. +|.+|.+|++++++++||||||.........+++++++||+.+++
T Consensus 108 GG~~~~-----~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~ 180 (306)
T 3ii7_A 108 GGSEVG-----NSALYLFECYDTRTESWHTKPS--MLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATET 180 (306)
T ss_dssp CCBBTT-----BSCCCCEEEEETTTTEEEEECC--CSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTE
T ss_pred CCCCCC-----CcEeeeEEEEeCCCCceEeCCC--CcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCe
Confidence 998632 1357999999999999999977 899999999999999999999987654434468999999999999
Q ss_pred eEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceee
Q 006384 221 WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGF 300 (647)
Q Consensus 221 W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~ 300 (647)
|+.++++ |.+|.+|++++++++|||+||.... ...+++++||+.+++|+.+.. +|.+|.+|
T Consensus 181 W~~~~~~-----p~~r~~~~~~~~~~~i~v~GG~~~~-----------~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~ 241 (306)
T 3ii7_A 181 WTELCPM-----IEARKNHGLVFVKDKIFAVGGQNGL-----------GGLDNVEYYDIKLNEWKMVSP---MPWKGVTV 241 (306)
T ss_dssp EEEECCC-----SSCCBSCEEEEETTEEEEECCEETT-----------EEBCCEEEEETTTTEEEECCC---CSCCBSCC
T ss_pred EEECCCc-----cchhhcceEEEECCEEEEEeCCCCC-----------CCCceEEEeeCCCCcEEECCC---CCCCccce
Confidence 9999877 8899999999999999999998764 567899999999999999965 48899999
Q ss_pred EEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 301 SMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 301 s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
++++++++||||||... ...++++++||+.+++|+.+..
T Consensus 242 ~~~~~~~~i~v~GG~~~---------~~~~~~~~~yd~~~~~W~~~~~ 280 (306)
T 3ii7_A 242 KCAAVGSIVYVLAGFQG---------VGRLGHILEYNTETDKWVANSK 280 (306)
T ss_dssp EEEEETTEEEEEECBCS---------SSBCCEEEEEETTTTEEEEEEE
T ss_pred eEEEECCEEEEEeCcCC---------CeeeeeEEEEcCCCCeEEeCCC
Confidence 99999999999999864 2357899999999999999876
No 11
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=4.9e-40 Score=341.85 Aligned_cols=239 Identities=19% Similarity=0.283 Sum_probs=210.5
Q ss_pred CCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEe
Q 006384 62 NVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFG 141 (647)
Q Consensus 62 ~~~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~G 141 (647)
..++|.+|.+|+++++ +++||||||.. +. ..++++++||+.+++|+.+++ +|.+|..|++++++++|||+|
T Consensus 45 ~~~~p~~r~~~~~~~~---~~~lyv~GG~~--~~--~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~G 115 (302)
T 2xn4_A 45 VAELPSRRCRAGMVYM---AGLVFAVGGFN--GS--LRVRTVDSYDPVKDQWTSVAN--MRDRRSTLGAAVLNGLLYAVG 115 (302)
T ss_dssp ECCCSSCCBSCEEEEE---TTEEEEESCBC--SS--SBCCCEEEEETTTTEEEEECC--CSSCCBSCEEEEETTEEEEEE
T ss_pred cccCCcccccceEEEE---CCEEEEEeCcC--CC--ccccceEEECCCCCceeeCCC--CCccccceEEEEECCEEEEEc
Confidence 3578999999999999 89999999963 22 357899999999999999986 568999999999999999999
Q ss_pred CCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCce
Q 006384 142 GEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (647)
Q Consensus 142 G~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W 221 (647)
|.... ..++++|+||+.+++|+.+++ +|.+|.+|++++++++||||||..... ...++++++||+.+++|
T Consensus 116 G~~~~------~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~~--~~~~~~~~~yd~~~~~W 185 (302)
T 2xn4_A 116 GFDGS------TGLSSVEAYNIKSNEWFHVAP--MNTRRSSVGVGVVGGLLYAVGGYDVAS--RQCLSTVECYNATTNEW 185 (302)
T ss_dssp EECSS------CEEEEEEEEETTTTEEEEECC--CSSCCBSCEEEEETTEEEEECCEETTT--TEECCCEEEEETTTTEE
T ss_pred CCCCC------ccCceEEEEeCCCCeEeecCC--CCCcccCceEEEECCEEEEEeCCCCCC--CccccEEEEEeCCCCcE
Confidence 97543 256899999999999999987 789999999999999999999986542 23689999999999999
Q ss_pred EEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeE
Q 006384 222 QEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFS 301 (647)
Q Consensus 222 ~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s 301 (647)
+.++++ |.+|.+|++++++++|||+||.... ...+++++||+.+++|+.+..+ |.+|.+|+
T Consensus 186 ~~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~-----------~~~~~~~~yd~~~~~W~~~~~~---~~~r~~~~ 246 (302)
T 2xn4_A 186 TYIAEM-----STRRSGAGVGVLNNLLYAVGGHDGP-----------LVRKSVEVYDPTTNAWRQVADM---NMCRRNAG 246 (302)
T ss_dssp EEECCC-----SSCCBSCEEEEETTEEEEECCBSSS-----------SBCCCEEEEETTTTEEEEECCC---SSCCBSCE
T ss_pred EECCCC-----ccccccccEEEECCEEEEECCCCCC-----------cccceEEEEeCCCCCEeeCCCC---CCccccCe
Confidence 999877 8899999999999999999998654 4578899999999999999754 78899999
Q ss_pred EEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeE
Q 006384 302 MCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (647)
Q Consensus 302 ~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (647)
+++++++||||||.+. ...++++++||+.+++|+.++
T Consensus 247 ~~~~~~~i~v~GG~~~---------~~~~~~v~~yd~~~~~W~~~~ 283 (302)
T 2xn4_A 247 VCAVNGLLYVVGGDDG---------SCNLASVEYYNPTTDKWTVVS 283 (302)
T ss_dssp EEEETTEEEEECCBCS---------SSBCCCEEEEETTTTEEEECS
T ss_pred EEEECCEEEEECCcCC---------CcccccEEEEcCCCCeEEECC
Confidence 9999999999999764 235789999999999999876
No 12
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=7.8e-40 Score=341.86 Aligned_cols=243 Identities=19% Similarity=0.289 Sum_probs=213.9
Q ss_pred cCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEE
Q 006384 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIF 140 (647)
Q Consensus 61 ~~~~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~ 140 (647)
...++|.+|.+|+++++ +++||||||..........++++++||+.+++|+.+++ +|.+|..|++++++++|||+
T Consensus 53 ~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~ 127 (308)
T 1zgk_A 53 RLADLQVPRSGLAGCVV---GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAP--MSVPRNRIGVGVIDGHIYAV 127 (308)
T ss_dssp ECCCCSSCCBSCEEEEE---TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCC--CSSCCBTCEEEEETTEEEEE
T ss_pred ECCCCCcccccceEEEE---CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCC--CCcCccccEEEEECCEEEEE
Confidence 44678999999999999 89999999964222334578999999999999999976 46899999999999999999
Q ss_pred eCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc
Q 006384 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (647)
Q Consensus 141 GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (647)
||.... ..++++++||+.+++|+.+++ +|.+|.+|++++++++||||||..... .++++++||+.+++
T Consensus 128 GG~~~~------~~~~~~~~yd~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~~----~~~~~~~yd~~~~~ 195 (308)
T 1zgk_A 128 GGSHGC------IHHNSVERYEPERDEWHLVAP--MLTRRIGVGVAVLNRLLYAVGGFDGTN----RLNSAECYYPERNE 195 (308)
T ss_dssp CCEETT------EECCCEEEEETTTTEEEECCC--CSSCCBSCEEEEETTEEEEECCBCSSC----BCCCEEEEETTTTE
T ss_pred cCCCCC------cccccEEEECCCCCeEeECCC--CCccccceEEEEECCEEEEEeCCCCCC----cCceEEEEeCCCCe
Confidence 997653 257899999999999999987 799999999999999999999986542 38999999999999
Q ss_pred eEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceee
Q 006384 221 WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGF 300 (647)
Q Consensus 221 W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~ 300 (647)
|+.++++ |.+|.+|++++++++|||+||.... ...+++++||+.+++|+.+.. +|.+|.+|
T Consensus 196 W~~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~-----------~~~~~v~~yd~~~~~W~~~~~---~p~~r~~~ 256 (308)
T 1zgk_A 196 WRMITAM-----NTIRSGAGVCVLHNCIYAAGGYDGQ-----------DQLNSVERYDVETETWTFVAP---MKHRRSAL 256 (308)
T ss_dssp EEECCCC-----SSCCBSCEEEEETTEEEEECCBCSS-----------SBCCCEEEEETTTTEEEECCC---CSSCCBSC
T ss_pred EeeCCCC-----CCccccceEEEECCEEEEEeCCCCC-----------CccceEEEEeCCCCcEEECCC---CCCCccce
Confidence 9999877 8899999999999999999998754 457899999999999999975 48899999
Q ss_pred EEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 301 SMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 301 s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
++++++++||||||.+. ...++++++||+.+++|+.+..
T Consensus 257 ~~~~~~~~i~v~GG~~~---------~~~~~~v~~yd~~~~~W~~~~~ 295 (308)
T 1zgk_A 257 GITVHQGRIYVLGGYDG---------HTFLDSVECYDPDTDTWSEVTR 295 (308)
T ss_dssp EEEEETTEEEEECCBCS---------SCBCCEEEEEETTTTEEEEEEE
T ss_pred EEEEECCEEEEEcCcCC---------CcccceEEEEcCCCCEEeecCC
Confidence 99999999999999764 3457899999999999999866
No 13
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.5e-38 Score=330.29 Aligned_cols=239 Identities=19% Similarity=0.281 Sum_probs=210.8
Q ss_pred cCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCe---EEEecCCCCCCCcceeEEEEECCEE
Q 006384 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQE---WKVISSPNSPPPRSAHQAVSWKNYL 137 (647)
Q Consensus 61 ~~~~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~---W~~l~s~~~P~~R~~ha~v~~~~~i 137 (647)
....+|.+|.+|+++++ ++.||||||.. + ...++++++||+.+++ |+.+++ +|.+|..|++++++++|
T Consensus 45 ~~~~~p~~r~~~~~~~~---~~~l~v~GG~~--~--~~~~~~~~~~d~~~~~~~~W~~~~~--~p~~r~~~~~~~~~~~l 115 (301)
T 2vpj_A 45 FLPSITRKRRYVASVSL---HDRIYVIGGYD--G--RSRLSSVECLDYTADEDGVWYSVAP--MNVRRGLAGATTLGDMI 115 (301)
T ss_dssp ECCCCSSCCBSCEEEEE---TTEEEEECCBC--S--SCBCCCEEEEETTCCTTCCCEEECC--CSSCCBSCEEEEETTEE
T ss_pred eCCCCChhhccccEEEE---CCEEEEEcCCC--C--CccCceEEEEECCCCCCCeeEECCC--CCCCccceeEEEECCEE
Confidence 34568889999999999 89999999963 2 2367899999999999 999976 56899999999999999
Q ss_pred EEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcC
Q 006384 138 YIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (647)
Q Consensus 138 yv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~ 217 (647)
||+||.... ..++++++||+.+++|+.+++ +|.+|.+|++++++++||++||.... ..++++++||+.
T Consensus 116 yv~GG~~~~------~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~~d~~ 183 (301)
T 2vpj_A 116 YVSGGFDGS------RRHTSMERYDPNIDQWSMLGD--MQTAREGAGLVVASGVIYCLGGYDGL----NILNSVEKYDPH 183 (301)
T ss_dssp EEECCBCSS------CBCCEEEEEETTTTEEEEEEE--CSSCCBSCEEEEETTEEEEECCBCSS----CBCCCEEEEETT
T ss_pred EEEcccCCC------cccceEEEEcCCCCeEEECCC--CCCCcccceEEEECCEEEEECCCCCC----cccceEEEEeCC
Confidence 999998643 246899999999999999987 78999999999999999999998653 268999999999
Q ss_pred CCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCc
Q 006384 218 QFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPR 297 (647)
Q Consensus 218 t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R 297 (647)
+++|+.++++ |.+|.+|++++++++|||+||.... ...+++++||+.+++|+.+.. +|.+|
T Consensus 184 ~~~W~~~~~~-----p~~r~~~~~~~~~~~i~v~GG~~~~-----------~~~~~v~~yd~~~~~W~~~~~---~p~~r 244 (301)
T 2vpj_A 184 TGHWTNVTPM-----ATKRSGAGVALLNDHIYVVGGFDGT-----------AHLSSVEAYNIRTDSWTTVTS---MTTPR 244 (301)
T ss_dssp TTEEEEECCC-----SSCCBSCEEEEETTEEEEECCBCSS-----------SBCCCEEEEETTTTEEEEECC---CSSCC
T ss_pred CCcEEeCCCC-----CcccccceEEEECCEEEEEeCCCCC-----------cccceEEEEeCCCCcEEECCC---CCCcc
Confidence 9999999876 8899999999999999999998755 347899999999999999965 48899
Q ss_pred eeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 298 AGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 298 ~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
.+|++++++++||||||... ...++++++||+.+++|+.+..
T Consensus 245 ~~~~~~~~~~~i~v~GG~~~---------~~~~~~v~~yd~~~~~W~~~~~ 286 (301)
T 2vpj_A 245 CYVGATVLRGRLYAIAGYDG---------NSLLSSIECYDPIIDSWEVVTS 286 (301)
T ss_dssp BSCEEEEETTEEEEECCBCS---------SSBEEEEEEEETTTTEEEEEEE
T ss_pred cceeEEEECCEEEEEcCcCC---------CcccccEEEEcCCCCeEEEcCC
Confidence 99999999999999999764 2356899999999999999876
No 14
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=5.7e-37 Score=354.93 Aligned_cols=243 Identities=13% Similarity=0.217 Sum_probs=202.3
Q ss_pred CCCCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEec-CC---CCCCCcceeEEEEE--CCE
Q 006384 63 VPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVIS-SP---NSPPPRSAHQAVSW--KNY 136 (647)
Q Consensus 63 ~~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~-s~---~~P~~R~~ha~v~~--~~~ 136 (647)
..+|.+|.+++++ + ++.||||||.. + ..++++|+||+.+++|+.++ ++ ..|.+|.+|+++++ +++
T Consensus 383 ~~~p~rr~g~~~~-~---~~~iyv~GG~~--~---~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~ 453 (695)
T 2zwa_A 383 ECPINRKFGDVDV-A---GNDVFYMGGSN--P---YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQ 453 (695)
T ss_dssp CCTTCCBSCEEEE-C---SSCEEEECCBS--S---SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTE
T ss_pred CCCCCCceeEEEE-E---CCEEEEECCCC--C---CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCE
Confidence 3456667776554 5 79999999962 2 36789999999999999998 52 36899999999999 999
Q ss_pred EEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEE
Q 006384 137 LYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFD 215 (647)
Q Consensus 137 iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD 215 (647)
||||||...... .++++|+||+.+++|+.+++ +|.+|++|+++++ +++||||||..... ++++||
T Consensus 454 lyv~GG~~~~~~-----~~~dv~~yd~~t~~W~~~~~--~p~~R~~h~~~~~~~~~iyv~GG~~~~~-------~v~~yd 519 (695)
T 2zwa_A 454 LLLIGGRKAPHQ-----GLSDNWIFDMKTREWSMIKS--LSHTRFRHSACSLPDGNVLILGGVTEGP-------AMLLYN 519 (695)
T ss_dssp EEEECCBSSTTC-----BCCCCEEEETTTTEEEECCC--CSBCCBSCEEEECTTSCEEEECCBCSSC-------SEEEEE
T ss_pred EEEEcCCCCCCC-----ccccEEEEeCCCCcEEECCC--CCCCcccceEEEEcCCEEEEECCCCCCC-------CEEEEE
Confidence 999999865432 57999999999999999987 8999999999997 99999999986532 899999
Q ss_pred cCCCceEEeccCCCCCCCCCceeeeEEEeC---CEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCe------EEE
Q 006384 216 LDQFKWQEIKPRFGSMWPSPRSGFQFFVYQ---DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE------WSK 286 (647)
Q Consensus 216 ~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~---~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~------W~~ 286 (647)
+.+++|+.+++. +..|.+|.+|++++++ ++|||+||.... ....++++|+||+.+++ |+.
T Consensus 520 ~~t~~W~~~~~~--g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~---------~~~~~~~v~~yd~~~~~w~~~~~W~~ 588 (695)
T 2zwa_A 520 VTEEIFKDVTPK--DEFFQNSLVSAGLEFDPVSKQGIILGGGFMD---------QTTVSDKAIIFKYDAENATEPITVIK 588 (695)
T ss_dssp TTTTEEEECCCS--SGGGGSCCBSCEEEEETTTTEEEEECCBCTT---------SSCBCCEEEEEEECTTCSSCCEEEEE
T ss_pred CCCCceEEccCC--CCCCCcccceeEEEEeCCCCEEEEECCcCCC---------CCeeeCcEEEEEccCCccccceEEEE
Confidence 999999999874 2348899999988876 899999998644 12567899999999999 999
Q ss_pred eecCCCCCCCceeeEEEEEC-CeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeE
Q 006384 287 VKKIGMPPGPRAGFSMCVHK-KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (647)
Q Consensus 287 v~~~g~~P~~R~~~s~~~~~-~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (647)
+..+ +|.+|.+|++++++ ++||||||...... ....+++++||+.+++|+.+.
T Consensus 589 ~~~~--p~~~R~~~~~~~~~~~~iyv~GG~~~~~~------~~~~~~v~~yd~~t~~W~~~~ 642 (695)
T 2zwa_A 589 KLQH--PLFQRYGSQIKYITPRKLLIVGGTSPSGL------FDRTNSIISLDPLSETLTSIP 642 (695)
T ss_dssp EEEC--GGGCCBSCEEEEEETTEEEEECCBCSSCC------CCTTTSEEEEETTTTEEEECC
T ss_pred cCCC--CCCCcccceEEEeCCCEEEEECCccCCCC------CCCCCeEEEEECCCCeEEEee
Confidence 8763 36889999999999 99999999864211 135799999999999999543
No 15
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=5.1e-35 Score=311.26 Aligned_cols=264 Identities=17% Similarity=0.215 Sum_probs=204.3
Q ss_pred cCCCCC-CCCcceEEEEeccCCCEEEEEcCeec-CCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEE
Q 006384 61 DNVPAP-SPRSNCSLNINPLKETELILYGGEFY-NGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLY 138 (647)
Q Consensus 61 ~~~~~P-~~R~~~s~~~~~~~~~~lyv~GG~~~-~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iy 138 (647)
...++| .+|.+|+++++ +++||||||... .......++++|+||+.+++|+.++++. |.+|.+|++++++++||
T Consensus 47 ~~~~~p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-p~~r~~~~~~~~~~~iy 122 (357)
T 2uvk_A 47 ALAAFPGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHA-PMGMAGHVTFVHNGKAY 122 (357)
T ss_dssp ECCCCTTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCC-SSCCSSEEEEEETTEEE
T ss_pred ECCCCCCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCC-CcccccceEEEECCEEE
Confidence 456678 89999999999 899999999722 1223457899999999999999999875 79999999999999999
Q ss_pred EEeCCcCCCC----------------------------CccccccCcEEEEECCCCcEEEcccCCCCCCcc-eeEEEEEC
Q 006384 139 IFGGEFTSPN----------------------------QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRS-GHRMVLYK 189 (647)
Q Consensus 139 v~GG~~~~~~----------------------------~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~-~h~~~~~~ 189 (647)
||||...... ...+..++++++||+.+++|+.+.+ +|.+|. +|++++++
T Consensus 123 v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~--~p~~~~~~~~~~~~~ 200 (357)
T 2uvk_A 123 VTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGE--SPWYGTAGAAVVNKG 200 (357)
T ss_dssp EEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEE--CSSCCCBSCEEEEET
T ss_pred EEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCC--CCCCCcccccEEEEC
Confidence 9999753210 0001246899999999999999977 776654 59999999
Q ss_pred CEEEEEecccCCCCceeeeCcEEEEEc--CCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCccc----
Q 006384 190 HKIIVFGGFYDTLREVRYYNDLYVFDL--DQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKN---- 263 (647)
Q Consensus 190 ~~lyv~GG~~~~~~~~~~~~dv~~yD~--~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~---- 263 (647)
++||||||..... ...+++++||+ .+++|+.+.+++ .|.+|.+|++++++++|||+||.... ....
T Consensus 201 ~~iyv~GG~~~~~---~~~~~v~~~d~d~~~~~W~~~~~~~---~~~~~~~~~~~~~~~~iyv~GG~~~~--~~~~~~~~ 272 (357)
T 2uvk_A 201 DKTWLINGEAKPG---LRTDAVFELDFTGNNLKWNKLAPVS---SPDGVAGGFAGISNDSLIFAGGAGFK--GSRENYQN 272 (357)
T ss_dssp TEEEEECCEEETT---EECCCEEEEECC---CEEEECCCSS---TTTCCBSCEEEEETTEEEEECCEECT--THHHHHHT
T ss_pred CEEEEEeeecCCC---cccCceEEEEecCCCCcEEecCCCC---CCcccccceEEEECCEEEEEcCcccc--CCcccccc
Confidence 9999999986532 35789999987 899999998873 25567788899999999999997542 0000
Q ss_pred -C---CCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECC
Q 006384 264 -Q---SEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD 339 (647)
Q Consensus 264 -~---~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~ 339 (647)
. ......++++++||+.+++|+.+..+ |.+|.+|++++++++||||||.+.. ...+++|++|+++
T Consensus 273 g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~i~v~GG~~~~--------~~~~~~v~~l~~~ 341 (357)
T 2uvk_A 273 GKNYAHEGLKKSYSTDIHLWHNGKWDKSGEL---SQGRAYGVSLPWNNSLLIIGGETAG--------GKAVTDSVLITVK 341 (357)
T ss_dssp TCSSTTTTCCCEECCEEEECC---CEEEEEC---SSCCBSSEEEEETTEEEEEEEECGG--------GCEEEEEEEEEC-
T ss_pred cceeccccccceeeEEEEecCCCceeeCCCC---CCCcccceeEEeCCEEEEEeeeCCC--------CCEeeeEEEEEEc
Confidence 0 01123457899999999999999764 8899999999999999999998652 2347999999999
Q ss_pred CCcEEEeEec
Q 006384 340 NHRWYPLELR 349 (647)
Q Consensus 340 t~~W~~l~~~ 349 (647)
+++|..+.+.
T Consensus 342 ~~~~~~~~~~ 351 (357)
T 2uvk_A 342 DNKVTVQNLE 351 (357)
T ss_dssp CCSCEEEC--
T ss_pred CcEeEeeecc
Confidence 9999998774
No 16
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=3.2e-32 Score=315.20 Aligned_cols=242 Identities=14% Similarity=0.155 Sum_probs=201.6
Q ss_pred CCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcc-c---CCCCCCcceeEEEEE--CCEE
Q 006384 119 PNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLN-L---KGCPSPRSGHRMVLY--KHKI 192 (647)
Q Consensus 119 ~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~-~---~~~P~~R~~h~~~~~--~~~l 192 (647)
+..|.+|++|+++ +++.||||||... . .++++|+||+.+++|+.++ + ..+|.+|.+|+++++ +++|
T Consensus 383 ~~~p~rr~g~~~~-~~~~iyv~GG~~~---~----~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~l 454 (695)
T 2zwa_A 383 ECPINRKFGDVDV-AGNDVFYMGGSNP---Y----RVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQL 454 (695)
T ss_dssp CCTTCCBSCEEEE-CSSCEEEECCBSS---S----BCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEE
T ss_pred CCCCCCceeEEEE-ECCEEEEECCCCC---C----CcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEE
Confidence 3345667665544 8999999999765 1 4689999999999999998 4 236999999999999 9999
Q ss_pred EEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCcee
Q 006384 193 IVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIH 271 (647)
Q Consensus 193 yv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~ 271 (647)
|||||..... ..++++|+||+.+++|+.++++ |.+|++|+++++ +++||||||.... .
T Consensus 455 yv~GG~~~~~---~~~~dv~~yd~~t~~W~~~~~~-----p~~R~~h~~~~~~~~~iyv~GG~~~~-----------~-- 513 (695)
T 2zwa_A 455 LLIGGRKAPH---QGLSDNWIFDMKTREWSMIKSL-----SHTRFRHSACSLPDGNVLILGGVTEG-----------P-- 513 (695)
T ss_dssp EEECCBSSTT---CBCCCCEEEETTTTEEEECCCC-----SBCCBSCEEEECTTSCEEEECCBCSS-----------C--
T ss_pred EEEcCCCCCC---CccccEEEEeCCCCcEEECCCC-----CCCcccceEEEEcCCEEEEECCCCCC-----------C--
Confidence 9999986543 2689999999999999999877 899999999997 9999999998765 1
Q ss_pred eeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEEC---CeEEEecceeccccCccccccccCCcEEEEECCCCc------
Q 006384 272 SDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHK---KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR------ 342 (647)
Q Consensus 272 ~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~---~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~------ 342 (647)
++++||+.+++|+.+...+..|.+|.+|++++++ ++||||||..... ...++++|+||+.+++
T Consensus 514 -~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~-------~~~~~~v~~yd~~~~~w~~~~~ 585 (695)
T 2zwa_A 514 -AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQ-------TTVSDKAIIFKYDAENATEPIT 585 (695)
T ss_dssp -SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTS-------SCBCCEEEEEEECTTCSSCCEE
T ss_pred -CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCC-------CeeeCcEEEEEccCCccccceE
Confidence 8999999999999999877779999999988876 8999999985421 2467999999999999
Q ss_pred EEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhhcccccccccccCCcceeecCce
Q 006384 343 WYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGV 422 (647)
Q Consensus 343 W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (647)
|+.+...
T Consensus 586 W~~~~~~------------------------------------------------------------------------- 592 (695)
T 2zwa_A 586 VIKKLQH------------------------------------------------------------------------- 592 (695)
T ss_dssp EEEEEEC-------------------------------------------------------------------------
T ss_pred EEEcCCC-------------------------------------------------------------------------
Confidence 5655540
Q ss_pred eeeecCCCCCcccccccccccCCCCCcCCccccccceeeec-CeEEEecceEeecCeEEeecceeccccCCccceEEe
Q 006384 423 LAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGK-DTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCI 499 (647)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~-~~Lyi~GG~~e~g~~e~tl~D~~~ldl~~~d~w~~~ 499 (647)
.|.+|++|++++.+ +.|||+||....+.. ..++++|.||+.+ ++|+.+
T Consensus 593 ---------------------------p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~-~~~~~v~~yd~~t-~~W~~~ 641 (695)
T 2zwa_A 593 ---------------------------PLFQRYGSQIKYITPRKLLIVGGTSPSGLF-DRTNSIISLDPLS-ETLTSI 641 (695)
T ss_dssp ---------------------------GGGCCBSCEEEEEETTEEEEECCBCSSCCC-CTTTSEEEEETTT-TEEEEC
T ss_pred ---------------------------CCCCcccceEEEeCCCEEEEECCccCCCCC-CCCCeEEEEECCC-CeEEEe
Confidence 26889999999999 999999998533211 2489999999999 999953
No 17
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.97 E-value=1.2e-30 Score=300.50 Aligned_cols=308 Identities=11% Similarity=0.021 Sum_probs=220.4
Q ss_pred CCCCcceEEEEeccCCCEEEEEcCeecCC--CcceeeCcEEEEECCCCeEEEecCCCCCCCccee--EEEE-ECCEEEEE
Q 006384 66 PSPRSNCSLNINPLKETELILYGGEFYNG--NKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAH--QAVS-WKNYLYIF 140 (647)
Q Consensus 66 P~~R~~~s~~~~~~~~~~lyv~GG~~~~g--~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~h--a~v~-~~~~iyv~ 140 (647)
|.||..+++++++. +++|||+||...+. ......+.+++||+.+++|+.++.+ |.+|..| ++++ .+++|||+
T Consensus 183 ~~P~~~~~~av~~~-~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~--~~~~~~~~~~~~~~~~g~lyv~ 259 (656)
T 1k3i_A 183 DLPIVPAAAAIEPT-SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT--VTKHDMFCPGISMDGNGQIVVT 259 (656)
T ss_dssp ECSSCCSEEEEETT-TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE--ECSCCCSSCEEEECTTSCEEEE
T ss_pred cCCCCceeEEEEec-CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCccc--CCCCCCccccccCCCCCCEEEe
Confidence 34556667777643 58999999964321 1112345799999999999988764 3555544 3444 48999999
Q ss_pred eCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCC
Q 006384 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (647)
Q Consensus 141 GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (647)
||... .++++||+.+++|+.++. +|.+|.+|+++++ +++|||+||..... ..++++++||+.++
T Consensus 260 GG~~~----------~~v~~yd~~t~~W~~~~~--~~~~R~~~s~~~~~dg~iyv~GG~~~~~---~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 260 GGNDA----------KKTSLYDSSSDSWIPGPD--MQVARGYQSSATMSDGRVFTIGGSWSGG---VFEKNGEVYSPSSK 324 (656)
T ss_dssp CSSST----------TCEEEEEGGGTEEEECCC--CSSCCSSCEEEECTTSCEEEECCCCCSS---SCCCCEEEEETTTT
T ss_pred CCCCC----------CceEEecCcCCceeECCC--CCccccccceEEecCCeEEEEeCcccCC---cccccceEeCCCCC
Confidence 99743 379999999999999986 8999999999999 99999999954322 25789999999999
Q ss_pred ceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCC----CC
Q 006384 220 KWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMP----PG 295 (647)
Q Consensus 220 ~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~----P~ 295 (647)
+|+.++......++.+|.. +++..++.||++||.++..+ .....+++++||+.++.|......... +.
T Consensus 325 ~W~~~~~~~~~p~~~~~~~-~~~~~~~~iyv~Gg~~g~~~-------~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~ 396 (656)
T 1k3i_A 325 TWTSLPNAKVNPMLTADKQ-GLYRSDNHAWLFGWKKGSVF-------QAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAP 396 (656)
T ss_dssp EEEEETTSCSGGGCCCCTT-GGGTTTCSCCEEECGGGCEE-------ECCSSSEEEEEECSTTCEEEEEEECEETTEECC
T ss_pred cceeCCCcccccccccccc-ceeecCCceEEEECCCCcEE-------EecCccceeeeecCCcceeecCCccccccccCC
Confidence 9999854321122444443 55557999999999875410 012356899999999998865332111 12
Q ss_pred CceeeEEEE---ECCeEEEecceeccccCccccccccCC---cEEEEECCCCcEEEeEecCCCcchhhhccccccCCCch
Q 006384 296 PRAGFSMCV---HKKRALLFGGVVDMEMKGDVIMSLFLN---ELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSS 369 (647)
Q Consensus 296 ~R~~~s~~~---~~~~iyifGG~~~~~~~~~~~~~~~~n---dl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~ 369 (647)
++..+++++ ++++||||||...... ...++ .+++||+.+++|..+.. +.
T Consensus 397 ~~~~~~av~~~~~~~~i~v~GG~~~~~~------~~~~~~~~~v~~yd~~~~~W~~~~~--~~----------------- 451 (656)
T 1k3i_A 397 DAMCGNAVMYDAVKGKILTFGGSPDYQD------SDATTNAHIITLGEPGTSPNTVFAS--NG----------------- 451 (656)
T ss_dssp CCBTCEEEEEETTTTEEEEECCBSSSSS------SBCCCCEEEEECCSTTSCCEEEECT--TC-----------------
T ss_pred CCCCCceEeccCCCCeEEEEeCCCCCCC------CCcCCcceEEEcCCCCCCCeeEEcc--CC-----------------
Confidence 333444443 4899999999753211 12234 79999999999998762 00
Q ss_pred hhhhccCchhhhhcccCcccchhhhhhhhhhcccccccccccCCcceeecCceeeeecCCCCCcccccccccccCCCCCc
Q 006384 370 ALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIV 449 (647)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (647)
T Consensus 452 -------------------------------------------------------------------------------- 451 (656)
T 1k3i_A 452 -------------------------------------------------------------------------------- 451 (656)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccceeee-cCeEEEecceEeec--CeEEeecceeccccCCccceEEeccCCch
Q 006384 450 KPCGRINSCMVVG-KDTLYVYGGMMEIN--DQEITLDDLYSLNLSKLDEWKCIIPASES 505 (647)
Q Consensus 450 ~P~~R~~~~~~v~-~~~Lyi~GG~~e~g--~~e~tl~D~~~ldl~~~d~w~~~~~~~~~ 505 (647)
||.+|..|+++++ +++|||+||..... +....+++++.||+.+ ++|+.+.+....
T Consensus 452 mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t-~~W~~~~~~~~~ 509 (656)
T 1k3i_A 452 LYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQ-DTFYKQNPNSIV 509 (656)
T ss_dssp CSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGG-TEEEECCCCSSC
T ss_pred CCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCC-CceeecCCCCCc
Confidence 7999999999887 99999999974210 1123488999999998 999998876554
No 18
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.96 E-value=3.1e-29 Score=288.80 Aligned_cols=258 Identities=10% Similarity=0.058 Sum_probs=182.2
Q ss_pred CCCCCCcce--EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEE
Q 006384 64 PAPSPRSNC--SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIF 140 (647)
Q Consensus 64 ~~P~~R~~~--s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~ 140 (647)
.+|.+|..+ +++++. +++|||+||. +. +++++||+.+++|..+++ +|.+|.+|+++++ +++|||+
T Consensus 236 ~~~~~~~~~~~~~~~~~--~g~lyv~GG~--~~------~~v~~yd~~t~~W~~~~~--~~~~R~~~s~~~~~dg~iyv~ 303 (656)
T 1k3i_A 236 VTVTKHDMFCPGISMDG--NGQIVVTGGN--DA------KKTSLYDSSSDSWIPGPD--MQVARGYQSSATMSDGRVFTI 303 (656)
T ss_dssp EEECSCCCSSCEEEECT--TSCEEEECSS--ST------TCEEEEEGGGTEEEECCC--CSSCCSSCEEEECTTSCEEEE
T ss_pred ccCCCCCCccccccCCC--CCCEEEeCCC--CC------CceEEecCcCCceeECCC--CCccccccceEEecCCeEEEE
Confidence 455566544 455544 7999999995 22 279999999999999976 4689999999999 9999999
Q ss_pred eCCcCCCCCccccccCcEEEEECCCCcEEEcccCC---CCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcC
Q 006384 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG---CPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (647)
Q Consensus 141 GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~---~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~ 217 (647)
||..... ..++++++||+.+++|+.++..+ ++..|. ++++..++++|+|||..+........++++.||+.
T Consensus 304 GG~~~~~-----~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~-~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~ 377 (656)
T 1k3i_A 304 GGSWSGG-----VFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK-QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTS 377 (656)
T ss_dssp CCCCCSS-----SCCCCEEEEETTTTEEEEETTSCSGGGCCCCT-TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECS
T ss_pred eCcccCC-----cccccceEeCCCCCcceeCCCccccccccccc-cceeecCCceEEEECCCCcEEEecCccceeeeecC
Confidence 9953322 24689999999999999985322 344444 35556799999999986532111246799999999
Q ss_pred CCceEEeccCCCCC--CCCCceeeeEEE---eCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCC
Q 006384 218 QFKWQEIKPRFGSM--WPSPRSGFQFFV---YQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGM 292 (647)
Q Consensus 218 t~~W~~v~~~~~~~--~P~~R~~~s~~~---~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~ 292 (647)
++.|.......... .+.++..+++++ ++++|||+||.... .. .........+++||+.+++|..+. .+.
T Consensus 378 ~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~--~~---~~~~~~~~~v~~yd~~~~~W~~~~-~~~ 451 (656)
T 1k3i_A 378 GSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDY--QD---SDATTNAHIITLGEPGTSPNTVFA-SNG 451 (656)
T ss_dssp TTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSS--SS---SBCCCCEEEEECCSTTSCCEEEEC-TTC
T ss_pred CcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCC--CC---CCcCCcceEEEcCCCCCCCeeEEc-cCC
Confidence 99987643321000 011233444443 48999999997532 00 000112237899999999999986 234
Q ss_pred CCCCceeeEEEEE-CCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 293 PPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 293 ~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
+|.+|.+|+++++ +++|||+||........ .....+++++||+.+++|+.+..
T Consensus 452 mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~---~~~~~~~v~~ydp~t~~W~~~~~ 505 (656)
T 1k3i_A 452 LYFARTFHTSVVLPDGSTFITGGQRRGIPFE---DSTPVFTPEIYVPEQDTFYKQNP 505 (656)
T ss_dssp CSSCCBSCEEEECTTSCEEEECCBSBCCTTC---CCSBCCCCEEEEGGGTEEEECCC
T ss_pred CCCCcccCCeEECCCCCEEEECCcccCcCcC---CCCcccceEEEcCCCCceeecCC
Confidence 5899999999988 99999999975421100 13457899999999999998654
No 19
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.69 E-value=0.024 Score=58.28 Aligned_cols=193 Identities=13% Similarity=0.057 Sum_probs=111.8
Q ss_pred CcEEEEECCCCeEEEecC---CCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEE-EcccCCC
Q 006384 101 GDLYRYDVEKQEWKVISS---PNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWE-QLNLKGC 176 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s---~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~-~~~~~~~ 176 (647)
+.+..||+.++++...-. ...+.....+.++..++++||.... .+.+.++|+.+.+-. .++. .
T Consensus 17 ~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~-----------~~~v~viD~~t~~~~~~i~~--~ 83 (328)
T 3dsm_A 17 ATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNN-----------SHVIFAIDINTFKEVGRITG--F 83 (328)
T ss_dssp BEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGG-----------GTEEEEEETTTCCEEEEEEC--C
T ss_pred ceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcC-----------CCEEEEEECcccEEEEEcCC--C
Confidence 578999999998864210 0113334456677789999998752 257999999988763 3432 1
Q ss_pred CCCcceeEEEE-ECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEec-c
Q 006384 177 PSPRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGG-Y 254 (647)
Q Consensus 177 P~~R~~h~~~~-~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG-~ 254 (647)
...+.+++ .+++||+.... .+.|.++|+.+.+-...-...... .....-+.+++.++.|||..- .
T Consensus 84 ---~~p~~i~~~~~g~lyv~~~~---------~~~v~~iD~~t~~~~~~i~~g~~~-~~~~~p~~i~~~~~~lyv~~~~~ 150 (328)
T 3dsm_A 84 ---TSPRYIHFLSDEKAYVTQIW---------DYRIFIINPKTYEITGYIECPDMD-MESGSTEQMVQYGKYVYVNCWSY 150 (328)
T ss_dssp ---SSEEEEEEEETTEEEEEEBS---------CSEEEEEETTTTEEEEEEECTTCC-TTTCBCCCEEEETTEEEEEECTT
T ss_pred ---CCCcEEEEeCCCeEEEEECC---------CCeEEEEECCCCeEEEEEEcCCcc-ccCCCcceEEEECCEEEEEcCCC
Confidence 22233444 67899997642 367999999988754322221000 000022234457889998852 2
Q ss_pred cCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEecceeccccCccccccccCCcE
Q 006384 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNEL 333 (647)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl 333 (647)
. +.+.++|+.+.+....-..+..| +.+++- ++++|+.......... ...-.+.|
T Consensus 151 ~----------------~~v~viD~~t~~~~~~i~~g~~p-----~~i~~~~dG~l~v~~~~~~~~~~----~~~~~~~v 205 (328)
T 3dsm_A 151 Q----------------NRILKIDTETDKVVDELTIGIQP-----TSLVMDKYNKMWTITDGGYEGSP----YGYEAPSL 205 (328)
T ss_dssp C----------------CEEEEEETTTTEEEEEEECSSCB-----CCCEECTTSEEEEEBCCBCTTCS----SCBCCCEE
T ss_pred C----------------CEEEEEECCCCeEEEEEEcCCCc-----cceEEcCCCCEEEEECCCccCCc----cccCCceE
Confidence 2 34899999988766544333222 223333 5787776532110000 00003679
Q ss_pred EEEECCCCcEE
Q 006384 334 YGFQLDNHRWY 344 (647)
Q Consensus 334 ~~yd~~t~~W~ 344 (647)
+++|+.+.+..
T Consensus 206 ~~id~~t~~v~ 216 (328)
T 3dsm_A 206 YRIDAETFTVE 216 (328)
T ss_dssp EEEETTTTEEE
T ss_pred EEEECCCCeEE
Confidence 99999887644
No 20
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.65 E-value=0.0036 Score=61.94 Aligned_cols=161 Identities=16% Similarity=0.172 Sum_probs=108.0
Q ss_pred cceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCc
Q 006384 125 RSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLRE 204 (647)
Q Consensus 125 R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~ 204 (647)
-+-+.+...++.||+..|.... +.+.++|+.+++-..-.. +|..-++.+++..+++||+....
T Consensus 21 ~ftqGL~~~~~~LyestG~~g~---------S~v~~vD~~tgkv~~~~~--l~~~~fgeGi~~~~~~ly~ltw~------ 83 (243)
T 3mbr_X 21 AFTEGLFYLRGHLYESTGETGR---------SSVRKVDLETGRILQRAE--VPPPYFGAGIVAWRDRLIQLTWR------ 83 (243)
T ss_dssp CCEEEEEEETTEEEEEECCTTS---------CEEEEEETTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEESS------
T ss_pred cccccEEEECCEEEEECCCCCC---------ceEEEEECCCCCEEEEEe--CCCCcceeEEEEeCCEEEEEEee------
Confidence 3445667778999999996542 578999999997655443 45566778889999999998653
Q ss_pred eeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeE
Q 006384 205 VRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW 284 (647)
Q Consensus 205 ~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W 284 (647)
.+.+++||+.+.+-.. .. |.+..|.+++..++.||+.-| + +.++.+|+.+.+-
T Consensus 84 ---~~~v~v~D~~tl~~~~--ti-----~~~~~Gwglt~dg~~L~vSdg-s----------------~~l~~iDp~t~~~ 136 (243)
T 3mbr_X 84 ---NHEGFVYDLATLTPRA--RF-----RYPGEGWALTSDDSHLYMSDG-T----------------AVIRKLDPDTLQQ 136 (243)
T ss_dssp ---SSEEEEEETTTTEEEE--EE-----ECSSCCCEEEECSSCEEEECS-S----------------SEEEEECTTTCCE
T ss_pred ---CCEEEEEECCcCcEEE--EE-----eCCCCceEEeeCCCEEEEECC-C----------------CeEEEEeCCCCeE
Confidence 4689999998866433 22 223356677766888888766 2 2489999998765
Q ss_pred EEeecCCCCCCC-ceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcE
Q 006384 285 SKVKKIGMPPGP-RAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (647)
Q Consensus 285 ~~v~~~g~~P~~-R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (647)
...-..+..+.+ +.---+..++++||+--- ..++|.+.|+.+++=
T Consensus 137 ~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw--------------~s~~I~vIDp~tG~V 182 (243)
T 3mbr_X 137 VGSIKVTAGGRPLDNLNELEWVNGELLANVW--------------LTSRIARIDPASGKV 182 (243)
T ss_dssp EEEEECEETTEECCCEEEEEEETTEEEEEET--------------TTTEEEEECTTTCBE
T ss_pred EEEEEEccCCcccccceeeEEeCCEEEEEEC--------------CCCeEEEEECCCCCE
Confidence 443222211222 111234556888774321 257899999998863
No 21
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.61 E-value=0.012 Score=58.08 Aligned_cols=189 Identities=17% Similarity=0.158 Sum_probs=117.7
Q ss_pred cceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCC
Q 006384 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 70 ~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~ 149 (647)
+-+.+.+. ++.||+-.|.+ +. +.+.++|+.+++-..... +|..-++.+++..+++||+....
T Consensus 22 ftqGL~~~---~~~LyestG~~--g~-----S~v~~vD~~tgkv~~~~~--l~~~~fgeGi~~~~~~ly~ltw~------ 83 (243)
T 3mbr_X 22 FTEGLFYL---RGHLYESTGET--GR-----SSVRKVDLETGRILQRAE--VPPPYFGAGIVAWRDRLIQLTWR------ 83 (243)
T ss_dssp CEEEEEEE---TTEEEEEECCT--TS-----CEEEEEETTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEESS------
T ss_pred ccccEEEE---CCEEEEECCCC--CC-----ceEEEEECCCCCEEEEEe--CCCCcceeEEEEeCCEEEEEEee------
Confidence 33477777 78999999952 22 478999999987654332 34455677888889999998653
Q ss_pred ccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceE-EeccCC
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ-EIKPRF 228 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~-~v~~~~ 228 (647)
-+.+++||+.+.+-.. . .|.+..+.+++.-+++||+.-| .+.++.+|+.+.+-. .+....
T Consensus 84 -----~~~v~v~D~~tl~~~~--t--i~~~~~Gwglt~dg~~L~vSdg----------s~~l~~iDp~t~~~~~~I~V~~ 144 (243)
T 3mbr_X 84 -----NHEGFVYDLATLTPRA--R--FRYPGEGWALTSDDSHLYMSDG----------TAVIRKLDPDTLQQVGSIKVTA 144 (243)
T ss_dssp -----SSEEEEEETTTTEEEE--E--EECSSCCCEEEECSSCEEEECS----------SSEEEEECTTTCCEEEEEECEE
T ss_pred -----CCEEEEEECCcCcEEE--E--EeCCCCceEEeeCCCEEEEECC----------CCeEEEEeCCCCeEEEEEEEcc
Confidence 2679999998876432 2 1223456677777788998755 357999999997643 232221
Q ss_pred CCCCCCCce-eeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCC-CCC--------CCce
Q 006384 229 GSMWPSPRS-GFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG-MPP--------GPRA 298 (647)
Q Consensus 229 ~~~~P~~R~-~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g-~~P--------~~R~ 298 (647)
. +.+.. -..+...+++||+--.. .++|.+.|+.+.+-...-.++ ..| ..-.
T Consensus 145 ~---g~~~~~lNeLe~~~G~lyanvw~----------------s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~v 205 (243)
T 3mbr_X 145 G---GRPLDNLNELEWVNGELLANVWL----------------TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDV 205 (243)
T ss_dssp T---TEECCCEEEEEEETTEEEEEETT----------------TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSC
T ss_pred C---CcccccceeeEEeCCEEEEEECC----------------CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCc
Confidence 1 22211 12234458888854322 346999999887644432221 111 1112
Q ss_pred eeEEEEE--CCeEEEecc
Q 006384 299 GFSMCVH--KKRALLFGG 314 (647)
Q Consensus 299 ~~s~~~~--~~~iyifGG 314 (647)
--+.|+. .+++||.|-
T Consensus 206 lNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 206 LNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEEEEETTTTEEEEEET
T ss_pred eEEEEEcCCCCEEEEECC
Confidence 3455555 578888885
No 22
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.51 E-value=0.092 Score=54.51 Aligned_cols=185 Identities=15% Similarity=0.157 Sum_probs=103.1
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCC--eEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDF 158 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~--~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv 158 (647)
++.||+... .+.+++||+.+. .|+.-.... ...+.+..++.||+..+ -..+
T Consensus 103 ~~~v~v~~~----------~g~l~a~d~~tG~~~W~~~~~~~-----~~~~p~~~~~~v~v~~~------------~g~l 155 (376)
T 3q7m_A 103 GGHVYIGSE----------KAQVYALNTSDGTVAWQTKVAGE-----ALSRPVVSDGLVLIHTS------------NGQL 155 (376)
T ss_dssp TTEEEEEET----------TSEEEEEETTTCCEEEEEECSSC-----CCSCCEEETTEEEEECT------------TSEE
T ss_pred CCEEEEEcC----------CCEEEEEECCCCCEEEEEeCCCc-----eEcCCEEECCEEEEEcC------------CCeE
Confidence 688887544 147899999876 476543211 12223455788887543 1468
Q ss_pred EEEECCCCc--EEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCC--ceEEeccCCCCCCCC
Q 006384 159 WMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--KWQEIKPRFGSMWPS 234 (647)
Q Consensus 159 ~~yD~~t~~--W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~--~W~~v~~~~~~~~P~ 234 (647)
+.||+.+++ |..-........+.....++.++.||+ |.. -..++.||+.+. .|+.-...+.+....
T Consensus 156 ~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~-g~~---------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~ 225 (376)
T 3q7m_A 156 QALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVV-GGD---------NGRVSAVLMEQGQMIWQQRISQATGSTEI 225 (376)
T ss_dssp EEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEE-CCT---------TTEEEEEETTTCCEEEEEECCC-------
T ss_pred EEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEE-EcC---------CCEEEEEECCCCcEEEEEecccCCCCccc
Confidence 999998875 876543111112222344555777776 321 135889998765 477543321110000
Q ss_pred Cc---eeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCC--eEEEeecCCCCCCCceeeEEEEECCeE
Q 006384 235 PR---SGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPPGPRAGFSMCVHKKRA 309 (647)
Q Consensus 235 ~R---~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~v~~~g~~P~~R~~~s~~~~~~~i 309 (647)
.+ .....++.++.||+.+ ... .+++||+.+. .|+.... ...+.++.++.|
T Consensus 226 ~~~~~~~~~p~~~~~~v~~~~-~~g----------------~l~~~d~~tG~~~w~~~~~--------~~~~~~~~~~~l 280 (376)
T 3q7m_A 226 DRLSDVDTTPVVVNGVVFALA-YNG----------------NLTALDLRSGQIMWKRELG--------SVNDFIVDGNRI 280 (376)
T ss_dssp ----CCCCCCEEETTEEEEEC-TTS----------------CEEEEETTTCCEEEEECCC--------CEEEEEEETTEE
T ss_pred ccccccCCCcEEECCEEEEEe-cCc----------------EEEEEECCCCcEEeeccCC--------CCCCceEECCEE
Confidence 11 1233345578887754 322 2789998654 6765311 123456668888
Q ss_pred EEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 310 LLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 310 yifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
|+... -..|+.||+.+.+
T Consensus 281 ~~~~~---------------~g~l~~~d~~tG~ 298 (376)
T 3q7m_A 281 YLVDQ---------------NDRVMALTIDGGV 298 (376)
T ss_dssp EEEET---------------TCCEEEEETTTCC
T ss_pred EEEcC---------------CCeEEEEECCCCc
Confidence 88653 1359999998765
No 23
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.51 E-value=0.04 Score=56.59 Aligned_cols=208 Identities=13% Similarity=0.071 Sum_probs=119.4
Q ss_pred CCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEE-EecCCCCCCCcceeEEEE-ECCEEEEEeCCc
Q 006384 67 SPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSPPPRSAHQAVS-WKNYLYIFGGEF 144 (647)
Q Consensus 67 ~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~-~l~s~~~P~~R~~ha~v~-~~~~iyv~GG~~ 144 (647)
.......+++. +++|||.... .+.+.++|+.+.+-. .++.. .. -+.++. -+++||+....
T Consensus 42 lg~~~~~i~~~---~~~lyv~~~~---------~~~v~viD~~t~~~~~~i~~~--~~---p~~i~~~~~g~lyv~~~~- 103 (328)
T 3dsm_A 42 LGDVAQSMVIR---DGIGWIVVNN---------SHVIFAIDINTFKEVGRITGF--TS---PRYIHFLSDEKAYVTQIW- 103 (328)
T ss_dssp CBSCEEEEEEE---TTEEEEEEGG---------GTEEEEEETTTCCEEEEEECC--SS---EEEEEEEETTEEEEEEBS-
T ss_pred cCccceEEEEE---CCEEEEEEcC---------CCEEEEEECcccEEEEEcCCC--CC---CcEEEEeCCCeEEEEECC-
Confidence 33444666666 7899988762 257899999988763 44322 12 233444 57899998742
Q ss_pred CCCCCccccccCcEEEEECCCCcEEE-cccCCCC-CCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceE
Q 006384 145 TSPNQERFHHYKDFWMLDLKTNQWEQ-LNLKGCP-SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ 222 (647)
Q Consensus 145 ~~~~~~~~~~~~dv~~yD~~t~~W~~-~~~~~~P-~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~ 222 (647)
-+.|++||+.+.+-.. ++..... ....-+.+++.+++||+..-- ..+.|.++|+.+.+..
T Consensus 104 ----------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~--------~~~~v~viD~~t~~~~ 165 (328)
T 3dsm_A 104 ----------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWS--------YQNRILKIDTETDKVV 165 (328)
T ss_dssp ----------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECT--------TCCEEEEEETTTTEEE
T ss_pred ----------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCC--------CCCEEEEEECCCCeEE
Confidence 2579999999887543 3221100 000333455578999997420 1357999999998765
Q ss_pred EeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeE
Q 006384 223 EIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFS 301 (647)
Q Consensus 223 ~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s 301 (647)
..-.. + ..| +.++.. ++++|+....... . .......+.++++|+.+.+....-.. |....-..
T Consensus 166 ~~i~~--g--~~p---~~i~~~~dG~l~v~~~~~~~--~----~~~~~~~~~v~~id~~t~~v~~~~~~---~~g~~p~~ 229 (328)
T 3dsm_A 166 DELTI--G--IQP---TSLVMDKYNKMWTITDGGYE--G----SPYGYEAPSLYRIDAETFTVEKQFKF---KLGDWPSE 229 (328)
T ss_dssp EEEEC--S--SCB---CCCEECTTSEEEEEBCCBCT--T----CSSCBCCCEEEEEETTTTEEEEEEEC---CTTCCCEE
T ss_pred EEEEc--C--CCc---cceEEcCCCCEEEEECCCcc--C----CccccCCceEEEEECCCCeEEEEEec---CCCCCcee
Confidence 43222 1 122 233333 6788776532211 0 00001135799999998876643222 22222344
Q ss_pred EEEE--CCeEEEecceeccccCccccccccCCcEEEEECCCCcE
Q 006384 302 MCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (647)
Q Consensus 302 ~~~~--~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (647)
+++. ++.||+..+ .|++||+.+.+.
T Consensus 230 la~~~d~~~lyv~~~-----------------~v~~~d~~t~~~ 256 (328)
T 3dsm_A 230 VQLNGTRDTLYWINN-----------------DIWRMPVEADRV 256 (328)
T ss_dssp EEECTTSCEEEEESS-----------------SEEEEETTCSSC
T ss_pred EEEecCCCEEEEEcc-----------------EEEEEECCCCce
Confidence 5555 466777542 489999987663
No 24
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.46 E-value=0.023 Score=56.63 Aligned_cols=188 Identities=11% Similarity=0.039 Sum_probs=114.1
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCcc
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQER 151 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~ 151 (647)
..+.+. ++.||+-.|.+ + .+.+.++|+.+.+-..... +|..-++..++..+++||+....
T Consensus 46 qGL~~~---~~~LyestG~~--g-----~S~v~~vD~~Tgkv~~~~~--l~~~~FgeGit~~g~~ly~ltw~-------- 105 (262)
T 3nol_A 46 EGFFYR---NGYFYESTGLN--G-----RSSIRKVDIESGKTLQQIE--LGKRYFGEGISDWKDKIVGLTWK-------- 105 (262)
T ss_dssp EEEEEE---TTEEEEEEEET--T-----EEEEEEECTTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEESS--------
T ss_pred ceEEEE---CCEEEEECCCC--C-----CceEEEEECCCCcEEEEEe--cCCccceeEEEEeCCEEEEEEee--------
Confidence 556666 68999999952 2 1478899999987553322 23444567788889999999653
Q ss_pred ccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceE-EeccCCCC
Q 006384 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ-EIKPRFGS 230 (647)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~-~v~~~~~~ 230 (647)
-+.+++||+.+.+-..-- +.+-.+.+++.-++.||+.-| .+.++.+|+.+.+-. .++....+
T Consensus 106 ---~~~v~v~D~~t~~~~~ti----~~~~eG~glt~dg~~L~~SdG----------s~~i~~iDp~T~~v~~~I~V~~~g 168 (262)
T 3nol_A 106 ---NGLGFVWNIRNLRQVRSF----NYDGEGWGLTHNDQYLIMSDG----------TPVLRFLDPESLTPVRTITVTAHG 168 (262)
T ss_dssp ---SSEEEEEETTTCCEEEEE----ECSSCCCCEEECSSCEEECCS----------SSEEEEECTTTCSEEEEEECEETT
T ss_pred ---CCEEEEEECccCcEEEEE----ECCCCceEEecCCCEEEEECC----------CCeEEEEcCCCCeEEEEEEeccCC
Confidence 267999999887643221 222355667766778888654 357999999987643 33322100
Q ss_pred CCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCC-CC-------CCCceeeEE
Q 006384 231 MWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG-MP-------PGPRAGFSM 302 (647)
Q Consensus 231 ~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g-~~-------P~~R~~~s~ 302 (647)
.|..... .+...++.||+--- ..+.|.+.|+.+.+-...-... .. |..-.-.+.
T Consensus 169 -~~~~~lN-ELe~~~G~lyan~w----------------~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGI 230 (262)
T 3nol_A 169 -EELPELN-ELEWVDGEIFANVW----------------QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGI 230 (262)
T ss_dssp -EECCCEE-EEEEETTEEEEEET----------------TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEE
T ss_pred -ccccccc-eeEEECCEEEEEEc----------------cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEE
Confidence 0111111 23344888886322 2356999999887654433221 11 111223455
Q ss_pred EEE--CCeEEEecc
Q 006384 303 CVH--KKRALLFGG 314 (647)
Q Consensus 303 ~~~--~~~iyifGG 314 (647)
|+. .+++||.|-
T Consensus 231 A~dp~~~~lfVTGK 244 (262)
T 3nol_A 231 AWDKEHHRLFVTGK 244 (262)
T ss_dssp EEETTTTEEEEEET
T ss_pred EEcCCCCEEEEECC
Confidence 665 578888885
No 25
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.42 E-value=0.047 Score=56.79 Aligned_cols=198 Identities=11% Similarity=0.090 Sum_probs=108.8
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCC--eEEEecCCCCC-----CCcceeEEEEECCEEEEEeCCcC
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNSP-----PPRSAHQAVSWKNYLYIFGGEFT 145 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~--~W~~l~s~~~P-----~~R~~ha~v~~~~~iyv~GG~~~ 145 (647)
+.++. ++.||+.... +.+++||+.+. .|+.-.....+ ......+.+..++.||+...
T Consensus 48 ~p~v~---~~~v~~~~~~----------g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--- 111 (376)
T 3q7m_A 48 HPALA---DNVVYAADRA----------GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSE--- 111 (376)
T ss_dssp CCEEE---TTEEEEECTT----------SEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEET---
T ss_pred ccEEE---CCEEEEEcCC----------CeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcC---
Confidence 34455 7888887641 37899999765 57754322110 12233344556888988643
Q ss_pred CCCCccccccCcEEEEECCCCc--EEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc--e
Q 006384 146 SPNQERFHHYKDFWMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--W 221 (647)
Q Consensus 146 ~~~~~~~~~~~dv~~yD~~t~~--W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W 221 (647)
-..+++||+.+++ |+.-... ......++.++.||+..+ ...++.||+.+.+ |
T Consensus 112 ---------~g~l~a~d~~tG~~~W~~~~~~-----~~~~~p~~~~~~v~v~~~----------~g~l~~~d~~tG~~~W 167 (376)
T 3q7m_A 112 ---------KAQVYALNTSDGTVAWQTKVAG-----EALSRPVVSDGLVLIHTS----------NGQLQALNEADGAVKW 167 (376)
T ss_dssp ---------TSEEEEEETTTCCEEEEEECSS-----CCCSCCEEETTEEEEECT----------TSEEEEEETTTCCEEE
T ss_pred ---------CCEEEEEECCCCCEEEEEeCCC-----ceEcCCEEECCEEEEEcC----------CCeEEEEECCCCcEEE
Confidence 1469999998775 7653321 112223456888887433 2468999998765 8
Q ss_pred EEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCC--eEEEeecCC--CCCCCc
Q 006384 222 QEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIG--MPPGPR 297 (647)
Q Consensus 222 ~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~v~~~g--~~P~~R 297 (647)
+.-...+. ...+...+.++.++.||+ |.... .++.||+.+. .|+...... .....|
T Consensus 168 ~~~~~~~~---~~~~~~~~~~~~~~~v~~-g~~~g----------------~l~~~d~~tG~~~w~~~~~~~~~~~~~~~ 227 (376)
T 3q7m_A 168 TVNLDMPS---LSLRGESAPTTAFGAAVV-GGDNG----------------RVSAVLMEQGQMIWQQRISQATGSTEIDR 227 (376)
T ss_dssp EEECCC--------CCCCCCEEETTEEEE-CCTTT----------------EEEEEETTTCCEEEEEECCC---------
T ss_pred EEeCCCCc---eeecCCCCcEEECCEEEE-EcCCC----------------EEEEEECCCCcEEEEEecccCCCCccccc
Confidence 76543210 111222334455777665 43322 3788998644 677643210 000011
Q ss_pred ---eeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCC--cEEE
Q 006384 298 ---AGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH--RWYP 345 (647)
Q Consensus 298 ---~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~--~W~~ 345 (647)
.....++.++.+|+.+. ...|+.||+.+. .|..
T Consensus 228 ~~~~~~~p~~~~~~v~~~~~---------------~g~l~~~d~~tG~~~w~~ 265 (376)
T 3q7m_A 228 LSDVDTTPVVVNGVVFALAY---------------NGNLTALDLRSGQIMWKR 265 (376)
T ss_dssp --CCCCCCEEETTEEEEECT---------------TSCEEEEETTTCCEEEEE
T ss_pred ccccCCCcEEECCEEEEEec---------------CcEEEEEECCCCcEEeec
Confidence 12333456777777642 235899998776 4653
No 26
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.42 E-value=0.049 Score=54.58 Aligned_cols=202 Identities=12% Similarity=0.048 Sum_probs=119.5
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCc
Q 006384 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQE 150 (647)
Q Consensus 71 ~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~ 150 (647)
-+.+.+.+ ++.||+..|.+ + .+.+.++|+.+++-..... .+....+..++..++.||+..-.
T Consensus 23 ~~Gl~~~~--dg~Lyvstg~~--~-----~s~v~~iD~~tg~v~~~i~--l~~~~fgeGi~~~g~~lyv~t~~------- 84 (266)
T 2iwa_A 23 TQGLVYAE--NDTLFESTGLY--G-----RSSVRQVALQTGKVENIHK--MDDSYFGEGLTLLNEKLYQVVWL------- 84 (266)
T ss_dssp EEEEEECS--TTEEEEEECST--T-----TCEEEEEETTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEETT-------
T ss_pred cccEEEeC--CCeEEEECCCC--C-----CCEEEEEECCCCCEEEEEe--cCCCcceEEEEEeCCEEEEEEec-------
Confidence 36777775 48999988741 1 2479999999987553322 22334556777789999999642
Q ss_pred cccccCcEEEEECCCCcEE-EcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceE-EeccCC
Q 006384 151 RFHHYKDFWMLDLKTNQWE-QLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ-EIKPRF 228 (647)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~-~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~-~v~~~~ 228 (647)
-+.+++||+.+.+=. .++. + .-.+.+++.-++++|+.-| .+.++.+|+.+.+-. .++...
T Consensus 85 ----~~~v~viD~~t~~v~~~i~~---g-~~~g~glt~Dg~~l~vs~g----------s~~l~viD~~t~~v~~~I~Vg~ 146 (266)
T 2iwa_A 85 ----KNIGFIYDRRTLSNIKNFTH---Q-MKDGWGLATDGKILYGSDG----------TSILYEIDPHTFKLIKKHNVKY 146 (266)
T ss_dssp ----CSEEEEEETTTTEEEEEEEC---C-SSSCCEEEECSSSEEEECS----------SSEEEEECTTTCCEEEEEECEE
T ss_pred ----CCEEEEEECCCCcEEEEEEC---C-CCCeEEEEECCCEEEEECC----------CCeEEEEECCCCcEEEEEEECC
Confidence 267999999876532 2222 1 1233445555678888644 367999999987643 333221
Q ss_pred CCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecC-CC--------CCCCcee
Q 006384 229 GSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI-GM--------PPGPRAG 299 (647)
Q Consensus 229 ~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~-g~--------~P~~R~~ 299 (647)
. ..|..+.. .+...++.||+--.. .+.+.+.|+.+.+-...-.. +. .|..-.-
T Consensus 147 ~-~~p~~~~n-ele~~dg~lyvn~~~----------------~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~ 208 (266)
T 2iwa_A 147 N-GHRVIRLN-ELEYINGEVWANIWQ----------------TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVL 208 (266)
T ss_dssp T-TEECCCEE-EEEEETTEEEEEETT----------------SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCE
T ss_pred C-Ccccccce-eEEEECCEEEEecCC----------------CCeEEEEECCCCcEEEEEECCCcccccccccccccCce
Confidence 0 01211222 333347788765322 34699999988754332221 10 0111123
Q ss_pred eEEEEE--CCeEEEecceeccccCccccccccCCcEEEEECCC
Q 006384 300 FSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (647)
Q Consensus 300 ~s~~~~--~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (647)
.++++. ++++||.|+. .+.|++.++..
T Consensus 209 nGIa~~~~~~~lfVTgk~--------------~~~v~~i~l~~ 237 (266)
T 2iwa_A 209 NGIAWDQENKRIFVTGKL--------------WPKLFEIKLHL 237 (266)
T ss_dssp EEEEEETTTTEEEEEETT--------------CSEEEEEEEEE
T ss_pred EEEEEcCCCCEEEEECCC--------------CCeEEEEEEec
Confidence 455665 4689999875 46688887654
No 27
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.19 E-value=0.022 Score=56.87 Aligned_cols=184 Identities=15% Similarity=0.092 Sum_probs=111.1
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCcc
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQER 151 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~ 151 (647)
..+.+. ++.||+..|. ++.+.++|+.+.+-.... +|..-++..++..+++||+....
T Consensus 58 qGL~~~---~~~Ly~stG~---------~g~v~~iD~~Tgkv~~~~---l~~~~FgeGit~~g~~Ly~ltw~-------- 114 (268)
T 3nok_A 58 QGLVFH---QGHFFESTGH---------QGTLRQLSLESAQPVWME---RLGNIFAEGLASDGERLYQLTWT-------- 114 (268)
T ss_dssp EEEEEE---TTEEEEEETT---------TTEEEECCSSCSSCSEEE---ECTTCCEEEEEECSSCEEEEESS--------
T ss_pred ceEEEE---CCEEEEEcCC---------CCEEEEEECCCCcEEeEE---CCCCcceeEEEEeCCEEEEEEcc--------
Confidence 566666 7899999994 234889999987543322 23344566778889999998653
Q ss_pred ccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEE-eccCCCC
Q 006384 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE-IKPRFGS 230 (647)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~-v~~~~~~ 230 (647)
-+.+++||+.+.+-..-- +.+-.+.+++.-+++||+.-| .+.++.+|+.+.+-.. +.....
T Consensus 115 ---~~~v~V~D~~Tl~~~~ti----~~~~eGwGLt~Dg~~L~vSdG----------s~~l~~iDp~T~~v~~~I~V~~~- 176 (268)
T 3nok_A 115 ---EGLLFTWSGMPPQRERTT----RYSGEGWGLCYWNGKLVRSDG----------GTMLTFHEPDGFALVGAVQVKLR- 176 (268)
T ss_dssp ---SCEEEEEETTTTEEEEEE----ECSSCCCCEEEETTEEEEECS----------SSEEEEECTTTCCEEEEEECEET-
T ss_pred ---CCEEEEEECCcCcEEEEE----eCCCceeEEecCCCEEEEECC----------CCEEEEEcCCCCeEEEEEEeCCC-
Confidence 267999999887643221 223345677777889999765 3679999999976443 322210
Q ss_pred CCCCCcee-eeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCC-C--------CCCCceee
Q 006384 231 MWPSPRSG-FQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG-M--------PPGPRAGF 300 (647)
Q Consensus 231 ~~P~~R~~-~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g-~--------~P~~R~~~ 300 (647)
+.+... ..+...++.||+--- ..+.|.+.|+.+.+-...-..+ . .+..-.--
T Consensus 177 --g~~v~~lNeLe~~dG~lyanvw----------------~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlN 238 (268)
T 3nok_A 177 --GQPVELINELECANGVIYANIW----------------HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLN 238 (268)
T ss_dssp --TEECCCEEEEEEETTEEEEEET----------------TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEE
T ss_pred --CcccccccccEEeCCEEEEEEC----------------CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceE
Confidence 111111 123344888885321 2357999999887544332211 0 11111223
Q ss_pred EEEEE--CCeEEEecc
Q 006384 301 SMCVH--KKRALLFGG 314 (647)
Q Consensus 301 s~~~~--~~~iyifGG 314 (647)
+.|+. .++|||.|-
T Consensus 239 GIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 239 GIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEEECTTTCCEEEEET
T ss_pred EEEEcCCCCEEEEeCC
Confidence 44554 578888874
No 28
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.12 E-value=0.018 Score=57.54 Aligned_cols=157 Identities=11% Similarity=0.067 Sum_probs=101.6
Q ss_pred eEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceee
Q 006384 128 HQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRY 207 (647)
Q Consensus 128 ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~ 207 (647)
..+...++.||+..|.... +.+.++|+.+++-..-.. ++..-++.+++..+++||+....
T Consensus 46 qGL~~~~~~LyestG~~g~---------S~v~~vD~~Tgkv~~~~~--l~~~~FgeGit~~g~~ly~ltw~--------- 105 (262)
T 3nol_A 46 EGFFYRNGYFYESTGLNGR---------SSIRKVDIESGKTLQQIE--LGKRYFGEGISDWKDKIVGLTWK--------- 105 (262)
T ss_dssp EEEEEETTEEEEEEEETTE---------EEEEEECTTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEESS---------
T ss_pred ceEEEECCEEEEECCCCCC---------ceEEEEECCCCcEEEEEe--cCCccceeEEEEeCCEEEEEEee---------
Confidence 4455558999999986432 578899999997554433 44455667788899999998653
Q ss_pred eCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEe
Q 006384 208 YNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (647)
Q Consensus 208 ~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v 287 (647)
-+.+++||+.+.+-..- . +.+-.|.+++.-++.||+.-| + +.++.+|+.+.+-...
T Consensus 106 ~~~v~v~D~~t~~~~~t--i-----~~~~eG~glt~dg~~L~~SdG-s----------------~~i~~iDp~T~~v~~~ 161 (262)
T 3nol_A 106 NGLGFVWNIRNLRQVRS--F-----NYDGEGWGLTHNDQYLIMSDG-T----------------PVLRFLDPESLTPVRT 161 (262)
T ss_dssp SSEEEEEETTTCCEEEE--E-----ECSSCCCCEEECSSCEEECCS-S----------------SEEEEECTTTCSEEEE
T ss_pred CCEEEEEECccCcEEEE--E-----ECCCCceEEecCCCEEEEECC-C----------------CeEEEEcCCCCeEEEE
Confidence 46899999998764322 2 222355666666778888765 2 2489999998654433
Q ss_pred ecCCC--CCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcE
Q 006384 288 KKIGM--PPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (647)
Q Consensus 288 ~~~g~--~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (647)
-..+. -|..... -+...+++||+-- -..+.|.+.|+.+.+=
T Consensus 162 I~V~~~g~~~~~lN-ELe~~~G~lyan~--------------w~~~~I~vIDp~tG~V 204 (262)
T 3nol_A 162 ITVTAHGEELPELN-ELEWVDGEIFANV--------------WQTNKIVRIDPETGKV 204 (262)
T ss_dssp EECEETTEECCCEE-EEEEETTEEEEEE--------------TTSSEEEEECTTTCBE
T ss_pred EEeccCCccccccc-eeEEECCEEEEEE--------------ccCCeEEEEECCCCcE
Confidence 22111 1111111 2445588887522 1247899999998863
No 29
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.00 E-value=0.058 Score=54.04 Aligned_cols=158 Identities=13% Similarity=0.097 Sum_probs=98.0
Q ss_pred eEEEEEC-CEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCcee
Q 006384 128 HQAVSWK-NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVR 206 (647)
Q Consensus 128 ha~v~~~-~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~ 206 (647)
|.++..+ +.||+..|... -+.+.++|+.+++-..--+ ++....+.+++..+++||+....
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~---------~s~v~~iD~~tg~v~~~i~--l~~~~fgeGi~~~g~~lyv~t~~-------- 84 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYG---------RSSVRQVALQTGKVENIHK--MDDSYFGEGLTLLNEKLYQVVWL-------- 84 (266)
T ss_dssp EEEEECSTTEEEEEECSTT---------TCEEEEEETTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEETT--------
T ss_pred ccEEEeCCCeEEEECCCCC---------CCEEEEEECCCCCEEEEEe--cCCCcceEEEEEeCCEEEEEEec--------
Confidence 5566555 89999887432 2679999999998554333 34444566788889999998653
Q ss_pred eeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEE
Q 006384 207 YYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (647)
Q Consensus 207 ~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (647)
.+.+++||+.+.+= +...+.+ . -.+.+++.-++.+|+.-| + +.++++|+.+.+-..
T Consensus 85 -~~~v~viD~~t~~v--~~~i~~g-~---~~g~glt~Dg~~l~vs~g-s----------------~~l~viD~~t~~v~~ 140 (266)
T 2iwa_A 85 -KNIGFIYDRRTLSN--IKNFTHQ-M---KDGWGLATDGKILYGSDG-T----------------SILYEIDPHTFKLIK 140 (266)
T ss_dssp -CSEEEEEETTTTEE--EEEEECC-S---SSCCEEEECSSSEEEECS-S----------------SEEEEECTTTCCEEE
T ss_pred -CCEEEEEECCCCcE--EEEEECC-C---CCeEEEEECCCEEEEECC-C----------------CeEEEEECCCCcEEE
Confidence 46799999987643 2222111 1 234445555778888654 2 358999998866444
Q ss_pred eecCCCCCCCc-eeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 287 VKKIGMPPGPR-AGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 287 v~~~g~~P~~R-~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
.-..+..+.+. .-..+.+.+++||+--. ..+.|.+.|+.+++
T Consensus 141 ~I~Vg~~~~p~~~~nele~~dg~lyvn~~--------------~~~~V~vID~~tg~ 183 (266)
T 2iwa_A 141 KHNVKYNGHRVIRLNELEYINGEVWANIW--------------QTDCIARISAKDGT 183 (266)
T ss_dssp EEECEETTEECCCEEEEEEETTEEEEEET--------------TSSEEEEEETTTCC
T ss_pred EEEECCCCcccccceeEEEECCEEEEecC--------------CCCeEEEEECCCCc
Confidence 32222111111 12234445888775432 24789999998875
No 30
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=96.78 E-value=0.042 Score=56.97 Aligned_cols=185 Identities=11% Similarity=0.028 Sum_probs=103.2
Q ss_pred CEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEE
Q 006384 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFW 159 (647)
Q Consensus 82 ~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~ 159 (647)
..+|+.|+. -+.+++||+.+++-...-... ..-++++.. +..||+.|+.. ..+.
T Consensus 2 ~~l~vs~~~---------d~~v~v~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~d-----------~~i~ 57 (391)
T 1l0q_A 2 TFAYIANSE---------SDNISVIDVTSNKVTATIPVG----SNPMGAVISPDGTKVYVANAHS-----------NDVS 57 (391)
T ss_dssp EEEEEEETT---------TTEEEEEETTTTEEEEEEECS----SSEEEEEECTTSSEEEEEEGGG-----------TEEE
T ss_pred CEEEEEcCC---------CCEEEEEECCCCeEEEEeecC----CCcceEEECCCCCEEEEECCCC-----------CeEE
Confidence 467777772 247899999888655332211 112233332 34677777532 5689
Q ss_pred EEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCce
Q 006384 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS 237 (647)
Q Consensus 160 ~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~ 237 (647)
+||+.+++....-. .+ ..-..++.. +.+||+.|.. -+.+++||+.+.+....... ...
T Consensus 58 v~d~~~~~~~~~~~--~~--~~v~~~~~spdg~~l~~~~~~---------~~~v~v~d~~~~~~~~~~~~-------~~~ 117 (391)
T 1l0q_A 58 IIDTATNNVIATVP--AG--SSPQGVAVSPDGKQVYVTNMA---------SSTLSVIDTTSNTVAGTVKT-------GKS 117 (391)
T ss_dssp EEETTTTEEEEEEE--CS--SSEEEEEECTTSSEEEEEETT---------TTEEEEEETTTTEEEEEEEC-------SSS
T ss_pred EEECCCCeEEEEEE--CC--CCccceEECCCCCEEEEEECC---------CCEEEEEECCCCeEEEEEeC-------CCC
Confidence 99998887654433 11 122233333 3456665542 24689999998765444322 111
Q ss_pred eeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CC-eEEEec
Q 006384 238 GFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KK-RALLFG 313 (647)
Q Consensus 238 ~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~-~iyifG 313 (647)
..+++.. +..||+.++... .+++||+.+.+....-..+. .-..+++. ++ .||+.+
T Consensus 118 ~~~~~~s~dg~~l~~~~~~~~----------------~v~~~d~~~~~~~~~~~~~~-----~~~~~~~~~dg~~l~~~~ 176 (391)
T 1l0q_A 118 PLGLALSPDGKKLYVTNNGDK----------------TVSVINTVTKAVINTVSVGR-----SPKGIAVTPDGTKVYVAN 176 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTT----------------EEEEEETTTTEEEEEEECCS-----SEEEEEECTTSSEEEEEE
T ss_pred cceEEECCCCCEEEEEeCCCC----------------EEEEEECCCCcEEEEEecCC-----CcceEEECCCCCEEEEEe
Confidence 2334443 446777776543 38899998887665543221 12334443 33 565655
Q ss_pred ceeccccCccccccccCCcEEEEECCCCcEEE
Q 006384 314 GVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (647)
Q Consensus 314 G~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (647)
+. -+.|++||+.+.....
T Consensus 177 ~~--------------~~~v~~~d~~~~~~~~ 194 (391)
T 1l0q_A 177 FD--------------SMSISVIDTVTNSVID 194 (391)
T ss_dssp TT--------------TTEEEEEETTTTEEEE
T ss_pred CC--------------CCEEEEEECCCCeEEE
Confidence 43 2459999998875443
No 31
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=96.76 E-value=0.56 Score=47.22 Aligned_cols=208 Identities=14% Similarity=0.089 Sum_probs=105.1
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~ 149 (647)
+.+++.|. ++.||+.... +....-.+.++++|+.+.+....... ....+.++.. ++.+|+.++.
T Consensus 44 ~~~~~s~d-g~~l~~~~~~---~~~~~~~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~v~~~~------ 109 (353)
T 3vgz_A 44 YEMAYSQQ-ENALWLATSQ---SRKLDKGGVVYRLDPVTLEVTQAIHN----DLKPFGATINNTTQTLWFGNTV------ 109 (353)
T ss_dssp EEEEEETT-TTEEEEEECC---CTTTEESEEEEEECTTTCCEEEEEEE----SSCCCSEEEETTTTEEEEEETT------
T ss_pred cceEECCC-CCEEEEEcCC---CcCCCCCccEEEEcCCCCeEEEEEec----CCCcceEEECCCCCEEEEEecC------
Confidence 45566652 4678776642 11111235799999988765432211 1112333333 4568887653
Q ss_pred ccccccCcEEEEECCCCcEEE-cccCCCCC-----CcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCce
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQ-LNLKGCPS-----PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~-~~~~~~P~-----~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W 221 (647)
-+.+++||+.+.+-.. +....... +..-+.+++. +++||+.+... ...+++||+.+.+-
T Consensus 110 -----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~--------~~~i~~~d~~~~~~ 176 (353)
T 3vgz_A 110 -----NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK--------ESVIWVVDGGNIKL 176 (353)
T ss_dssp -----TTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS--------SCEEEEEETTTTEE
T ss_pred -----CCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC--------CceEEEEcCCCCce
Confidence 1468999998887433 22211010 1112333333 45677765321 24699999987654
Q ss_pred EEeccCCCCCCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCcee
Q 006384 222 QEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAG 299 (647)
Q Consensus 222 ~~v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~ 299 (647)
...-.. ....-+.++.. +..||+... . ..+++||+.+.+-......+........
T Consensus 177 ~~~~~~------~~~~~~~~~~s~dg~~l~~~~~-~----------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 233 (353)
T 3vgz_A 177 KTAIQN------TGKMSTGLALDSEGKRLYTTNA-D----------------GELITIDTADNKILSRKKLLDDGKEHFF 233 (353)
T ss_dssp EEEECC------CCTTCCCCEEETTTTEEEEECT-T----------------SEEEEEETTTTEEEEEEECCCSSSCCCE
T ss_pred EEEecC------CCCccceEEECCCCCEEEEEcC-C----------------CeEEEEECCCCeEEEEEEcCCCCCCccc
Confidence 433221 11111223333 455666543 2 2477899887765443332111112223
Q ss_pred eEEEEE--CCeEEEecceeccccCccccccccCCcEEEEECCCCcE
Q 006384 300 FSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (647)
Q Consensus 300 ~s~~~~--~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (647)
.++++. ++.+|+.... .+.|++||+.+.+.
T Consensus 234 ~~~~~s~dg~~l~~~~~~--------------~~~v~~~d~~~~~~ 265 (353)
T 3vgz_A 234 INISLDTARQRAFITDSK--------------AAEVLVVDTRNGNI 265 (353)
T ss_dssp EEEEEETTTTEEEEEESS--------------SSEEEEEETTTCCE
T ss_pred ceEEECCCCCEEEEEeCC--------------CCEEEEEECCCCcE
Confidence 344444 3456555421 25699999977654
No 32
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=96.74 E-value=0.08 Score=54.84 Aligned_cols=194 Identities=13% Similarity=0.055 Sum_probs=105.9
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~ 149 (647)
.++++.|. +..||+.|+. -+.+++||+.+.+....-.. ...-.+++.. +..||+.|..
T Consensus 35 ~~~~~s~d-g~~l~~~~~~---------d~~i~v~d~~~~~~~~~~~~----~~~v~~~~~spdg~~l~~~~~~------ 94 (391)
T 1l0q_A 35 MGAVISPD-GTKVYVANAH---------SNDVSIIDTATNNVIATVPA----GSSPQGVAVSPDGKQVYVTNMA------ 94 (391)
T ss_dssp EEEEECTT-SSEEEEEEGG---------GTEEEEEETTTTEEEEEEEC----SSSEEEEEECTTSSEEEEEETT------
T ss_pred ceEEECCC-CCEEEEECCC---------CCeEEEEECCCCeEEEEEEC----CCCccceEECCCCCEEEEEECC------
Confidence 45566652 3567777752 24789999988876543221 1122233332 4557776542
Q ss_pred ccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccC
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (647)
-..+++||+.+++...... .......++.. +..||+.++. -+.+++||+.+.+....-..
T Consensus 95 -----~~~v~v~d~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~---------~~~v~~~d~~~~~~~~~~~~ 156 (391)
T 1l0q_A 95 -----SSTLSVIDTTSNTVAGTVK----TGKSPLGLALSPDGKKLYVTNNG---------DKTVSVINTVTKAVINTVSV 156 (391)
T ss_dssp -----TTEEEEEETTTTEEEEEEE----CSSSEEEEEECTTSSEEEEEETT---------TTEEEEEETTTTEEEEEEEC
T ss_pred -----CCEEEEEECCCCeEEEEEe----CCCCcceEEECCCCCEEEEEeCC---------CCEEEEEECCCCcEEEEEec
Confidence 1469999999887554432 11222333333 3467777653 24789999988776544332
Q ss_pred CCCCCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE
Q 006384 228 FGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (647)
Q Consensus 228 ~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~ 305 (647)
...-..++.. +..||+.++.+. .+++||+.+......... ...-.++++.
T Consensus 157 -------~~~~~~~~~~~dg~~l~~~~~~~~----------------~v~~~d~~~~~~~~~~~~-----~~~~~~~~~~ 208 (391)
T 1l0q_A 157 -------GRSPKGIAVTPDGTKVYVANFDSM----------------SISVIDTVTNSVIDTVKV-----EAAPSGIAVN 208 (391)
T ss_dssp -------CSSEEEEEECTTSSEEEEEETTTT----------------EEEEEETTTTEEEEEEEC-----SSEEEEEEEC
T ss_pred -------CCCcceEEECCCCCEEEEEeCCCC----------------EEEEEECCCCeEEEEEec-----CCCccceEEC
Confidence 1111233333 446777766543 388999988765544321 1122233333
Q ss_pred -CCeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 306 -~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
++..+++++... ..+.|++||+.+.+
T Consensus 209 ~~g~~l~~~~~~~-----------~~~~v~~~d~~~~~ 235 (391)
T 1l0q_A 209 PEGTKAYVTNVDK-----------YFNTVSMIDTGTNK 235 (391)
T ss_dssp TTSSEEEEEEECS-----------SCCEEEEEETTTTE
T ss_pred CCCCEEEEEecCc-----------CCCcEEEEECCCCe
Confidence 454444444210 13569999998764
No 33
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=96.73 E-value=0.33 Score=47.65 Aligned_cols=199 Identities=7% Similarity=-0.026 Sum_probs=107.4
Q ss_pred cceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCC
Q 006384 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPN 148 (647)
Q Consensus 70 ~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~ 148 (647)
.-+++++.+ ++.|||.... .+.+.+||+. .+...+..+. ....-++++.. ++.||+....
T Consensus 21 ~p~~i~~d~--~g~l~v~~~~---------~~~v~~~~~~-~~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~----- 81 (300)
T 2qc5_A 21 GPYGITSSE--DGKVWFTQHK---------ANKISSLDQS-GRIKEFEVPT--PDAKVMCLIVSSLGDIWFTENG----- 81 (300)
T ss_dssp CEEEEEECT--TSCEEEEETT---------TTEEEEECTT-SCEEEEECSS--TTCCEEEEEECTTSCEEEEETT-----
T ss_pred CcceeeECC--CCCEEEEcCC---------CCeEEEECCC-CceEEEECCC--CCCcceeEEECCCCCEEEEecC-----
Confidence 335566655 6788886541 1468899988 7666554321 11223333333 4678887531
Q ss_pred CccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccC
Q 006384 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (647)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (647)
...+++||+. ..+..+.... ....-+.+++. ++.||+.... .+.+++||+. .+...+...
T Consensus 82 ------~~~v~~~d~~-g~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~---------~~~i~~~~~~-g~~~~~~~~ 142 (300)
T 2qc5_A 82 ------ANKIGKLSKK-GGFTEYPLPQ--PDSGPYGITEGLNGDIWFTQLN---------GDRIGKLTAD-GTIYEYDLP 142 (300)
T ss_dssp ------TTEEEEECTT-SCEEEEECSS--TTCCEEEEEECSTTCEEEEETT---------TTEEEEECTT-SCEEEEECS
T ss_pred ------CCeEEEECCC-CCeEEecCCC--CCCCCccceECCCCCEEEEccC---------CCeEEEECCC-CCEEEccCC
Confidence 2468899988 7776554311 12223344443 5788876432 2468889987 665544321
Q ss_pred CCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCC-ceeeEEEEE
Q 006384 228 FGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGP-RAGFSMCVH 305 (647)
Q Consensus 228 ~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~-R~~~s~~~~ 305 (647)
.....-++++.. ++.||+...... .+++|++ +.++..+.. |.. ..-.++++-
T Consensus 143 -----~~~~~~~~i~~d~~g~l~v~~~~~~----------------~i~~~~~-~g~~~~~~~----~~~~~~~~~i~~d 196 (300)
T 2qc5_A 143 -----NKGSYPAFITLGSDNALWFTENQNN----------------SIGRITN-TGKLEEYPL----PTNAAAPVGITSG 196 (300)
T ss_dssp -----STTCCEEEEEECTTSSEEEEETTTT----------------EEEEECT-TCCEEEEEC----SSTTCCEEEEEEC
T ss_pred -----CCCCCceeEEECCCCCEEEEecCCC----------------eEEEECC-CCcEEEeeC----CCCCCCcceEEEC
Confidence 011122333433 566777653222 3888998 566665432 111 122333333
Q ss_pred -CCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeE
Q 006384 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (647)
Q Consensus 306 -~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (647)
++.||+.... .+.|++||+ +..+..+.
T Consensus 197 ~~g~l~v~~~~--------------~~~i~~~~~-~g~~~~~~ 224 (300)
T 2qc5_A 197 NDGALWFVEIM--------------GNKIGRITT-TGEISEYD 224 (300)
T ss_dssp TTSSEEEEETT--------------TTEEEEECT-TCCEEEEE
T ss_pred CCCCEEEEccC--------------CCEEEEEcC-CCcEEEEE
Confidence 5677775421 245889988 56666554
No 34
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=96.63 E-value=0.22 Score=49.83 Aligned_cols=195 Identities=13% Similarity=0.085 Sum_probs=97.9
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCc
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQE 150 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~ 150 (647)
++...| ++.+++.|+. + ..+..||+.+.+-...-.. .......+.+ ++.+++.|+..
T Consensus 70 ~~~~~~--~~~~l~s~~~--d-------~~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~s~~~d------ 128 (312)
T 4ery_A 70 DVAWSS--DSNLLVSASD--D-------KTLKIWDVSSGKCLKTLKG----HSNYVFCCNFNPQSNLIVSGSFD------ 128 (312)
T ss_dssp EEEECT--TSSEEEEEET--T-------SEEEEEETTTCCEEEEEEC----CSSCEEEEEECSSSSEEEEEETT------
T ss_pred EEEEcC--CCCEEEEECC--C-------CEEEEEECCCCcEEEEEcC----CCCCEEEEEEcCCCCEEEEEeCC------
Confidence 344444 4566666662 1 3678888887654322111 1111122233 45566777643
Q ss_pred cccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCC
Q 006384 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (647)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (647)
..+.+||+.+..-...-. .....-..+.+ ++.+++.|+.. ..+.+||+.+.+....-...
T Consensus 129 -----~~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~~wd~~~~~~~~~~~~~ 190 (312)
T 4ery_A 129 -----ESVRIWDVKTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYD---------GLCRIWDTASGQCLKTLIDD 190 (312)
T ss_dssp -----SCEEEEETTTCCEEEEEC----CCSSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTCCEEEEECCS
T ss_pred -----CcEEEEECCCCEEEEEec----CCCCcEEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCceeeEEecc
Confidence 358889998775432211 11111222333 55677777753 45888998876543322110
Q ss_pred CCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeE-EEEEC
Q 006384 229 GSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFS-MCVHK 306 (647)
Q Consensus 229 ~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s-~~~~~ 306 (647)
..+. -..++.. ++.+++.|+.++. +.+||+.+..-...-. +.......-.. ....+
T Consensus 191 ----~~~~-~~~~~~~~~~~~l~~~~~d~~----------------i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 248 (312)
T 4ery_A 191 ----DNPP-VSFVKFSPNGKYILAATLDNT----------------LKLWDYSKGKCLKTYT-GHKNEKYCIFANFSVTG 248 (312)
T ss_dssp ----SCCC-EEEEEECTTSSEEEEEETTTE----------------EEEEETTTTEEEEEEC-SSCCSSSCCCEEEECSS
T ss_pred ----CCCc-eEEEEECCCCCEEEEEcCCCe----------------EEEEECCCCcEEEEEE-ecCCceEEEEEEEEeCC
Confidence 0111 1112222 5566677766544 7888887765433322 11111111111 22235
Q ss_pred CeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 307 KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 307 ~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
+.+++.|+.. +.|.+||+.+..
T Consensus 249 ~~~l~sg~~d--------------g~i~vwd~~~~~ 270 (312)
T 4ery_A 249 GKWIVSGSED--------------NLVYIWNLQTKE 270 (312)
T ss_dssp SCEEEECCTT--------------SCEEEEETTTCC
T ss_pred CcEEEEECCC--------------CEEEEEECCCch
Confidence 6677777643 458999987754
No 35
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=96.61 E-value=0.14 Score=54.27 Aligned_cols=206 Identities=12% Similarity=0.032 Sum_probs=113.4
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CC-EEEEEeCCcCCCCC
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KN-YLYIFGGEFTSPNQ 149 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~-~iyv~GG~~~~~~~ 149 (647)
++...| +++.+++++. ++. ...++++|+.+.+...+.... .. ...+.+ ++ .|++.+....
T Consensus 183 ~~~~Sp--dg~~la~~s~--~~~----~~~i~~~d~~tg~~~~l~~~~----~~-~~~~~~spdg~~la~~~~~~g---- 245 (415)
T 2hqs_A 183 SPAWSP--DGSKLAYVTF--ESG----RSALVIQTLANGAVRQVASFP----RH-NGAPAFSPDGSKLAFALSKTG---- 245 (415)
T ss_dssp EEEECT--TSSEEEEEEC--TTS----SCEEEEEETTTCCEEEEECCS----SC-EEEEEECTTSSEEEEEECTTS----
T ss_pred eeEEcC--CCCEEEEEEe--cCC----CcEEEEEECCCCcEEEeecCC----Cc-ccCEEEcCCCCEEEEEEecCC----
Confidence 344555 4555555552 111 147899999998887665421 11 223333 34 4554544321
Q ss_pred ccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccC
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (647)
...+|+||+.+.....+... + .....+.+ +++.+++++..+. ...+|.+|+.+..-..+...
T Consensus 246 -----~~~i~~~d~~~~~~~~l~~~--~---~~~~~~~~spdg~~l~~~s~~~g------~~~i~~~d~~~~~~~~l~~~ 309 (415)
T 2hqs_A 246 -----SLNLYVMDLASGQIRQVTDG--R---SNNTEPTWFPDSQNLAFTSDQAG------RPQVYKVNINGGAPQRITWE 309 (415)
T ss_dssp -----SCEEEEEETTTCCEEECCCC--S---SCEEEEEECTTSSEEEEEECTTS------SCEEEEEETTSSCCEECCCS
T ss_pred -----CceEEEEECCCCCEEeCcCC--C---CcccceEECCCCCEEEEEECCCC------CcEEEEEECCCCCEEEEecC
Confidence 25799999999887665431 1 11222333 4554555443211 24689999988775554322
Q ss_pred CCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-
Q 006384 228 FGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH- 305 (647)
Q Consensus 228 ~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~- 305 (647)
.....+++.. +++.+++++.... ...++++|+.+.....+... . ...+++..
T Consensus 310 -------~~~~~~~~~spdG~~l~~~~~~~g-------------~~~i~~~d~~~~~~~~l~~~-----~-~~~~~~~sp 363 (415)
T 2hqs_A 310 -------GSQNQDADVSSDGKFMVMVSSNGG-------------QQHIAKQDLATGGVQVLSST-----F-LDETPSLAP 363 (415)
T ss_dssp -------SSEEEEEEECTTSSEEEEEEECSS-------------CEEEEEEETTTCCEEECCCS-----S-SCEEEEECT
T ss_pred -------CCcccCeEECCCCCEEEEEECcCC-------------ceEEEEEECCCCCEEEecCC-----C-CcCCeEEcC
Confidence 1222233333 5555555543211 24589999998887665431 1 22233333
Q ss_pred CCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 306 KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 306 ~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
+++.+++++.... ...||++|+.......+..
T Consensus 364 dg~~l~~~s~~~~-----------~~~l~~~d~~g~~~~~l~~ 395 (415)
T 2hqs_A 364 NGTMVIYSSSQGM-----------GSVLNLVSTDGRFKARLPA 395 (415)
T ss_dssp TSSEEEEEEEETT-----------EEEEEEEETTSCCEEECCC
T ss_pred CCCEEEEEEcCCC-----------ccEEEEEECCCCcEEEeeC
Confidence 6777777765321 2369999998877776654
No 36
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=96.60 E-value=0.14 Score=49.74 Aligned_cols=215 Identities=10% Similarity=0.040 Sum_probs=109.2
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCC-CeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEK-QEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~-~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~ 149 (647)
.++...| ++..+++++. ..+++||+.+ .+...+.... ....-..++.. ++..+++++....
T Consensus 45 ~~~~~sp--dg~~l~~~~~----------~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~--- 107 (297)
T 2ojh_A 45 EAPNWSP--DGKYLLLNSE----------GLLYRLSLAGDPSPEKVDTGF--ATICNNDHGISPDGALYAISDKVEF--- 107 (297)
T ss_dssp EEEEECT--TSSEEEEEET----------TEEEEEESSSCCSCEECCCTT--CCCBCSCCEECTTSSEEEEEECTTT---
T ss_pred EeeEECC--CCCEEEEEcC----------CeEEEEeCCCCCCceEecccc--ccccccceEECCCCCEEEEEEeCCC---
Confidence 4555666 5666666541 3789999998 7776665322 11111222222 4555555543221
Q ss_pred ccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CC-EEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccC
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (647)
....+|.+++.+.....+... .. .+.++.. ++ .|++.++... ...+|.+++.+.....+...
T Consensus 108 ----~~~~l~~~~~~~~~~~~~~~~---~~--~~~~~~spdg~~l~~~~~~~~-------~~~l~~~~~~~~~~~~~~~~ 171 (297)
T 2ojh_A 108 ----GKSAIYLLPSTGGTPRLMTKN---LP--SYWHGWSPDGKSFTYCGIRDQ-------VFDIYSMDIDSGVETRLTHG 171 (297)
T ss_dssp ----SSCEEEEEETTCCCCEECCSS---SS--EEEEEECTTSSEEEEEEEETT-------EEEEEEEETTTCCEEECCCS
T ss_pred ----CcceEEEEECCCCceEEeecC---CC--ccceEECCCCCEEEEEECCCC-------ceEEEEEECCCCcceEcccC
Confidence 136799999988776555431 11 2222222 34 4554554322 23678888887776655433
Q ss_pred CCCCCCCCceeeeEEEe-CCE-EEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE
Q 006384 228 FGSMWPSPRSGFQFFVY-QDE-VFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (647)
Q Consensus 228 ~~~~~P~~R~~~s~~~~-~~~-Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~ 305 (647)
+. ....++.. ++. |++.+.... ...+|.+++.......+... ......+++.
T Consensus 172 -----~~--~~~~~~~s~dg~~l~~~~~~~~--------------~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~s 225 (297)
T 2ojh_A 172 -----EG--RNDGPDYSPDGRWIYFNSSRTG--------------QMQIWRVRVDGSSVERITDS-----AYGDWFPHPS 225 (297)
T ss_dssp -----SS--CEEEEEECTTSSEEEEEECTTS--------------SCEEEEEETTSSCEEECCCC-----SEEEEEEEEC
T ss_pred -----CC--ccccceECCCCCEEEEEecCCC--------------CccEEEECCCCCCcEEEecC-----CcccCCeEEC
Confidence 11 11222332 444 444433222 23588888777666655321 1112222222
Q ss_pred -CCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 306 -~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
+++.+++++....... ........|++||+.+.....+..
T Consensus 226 ~dg~~l~~~~~~~~~~~---~~~~~~~~l~~~d~~~~~~~~~~~ 266 (297)
T 2ojh_A 226 PSGDKVVFVSYDADVFD---HPRDLDVRVQLMDMDGGNVETLFD 266 (297)
T ss_dssp TTSSEEEEEEEETTCCS---CCSSEEEEEEEEETTSCSCEEEEE
T ss_pred CCCCEEEEEEcCCCCCc---ccccCceEEEEEecCCCCceeeec
Confidence 5666666655321100 000012569999999887766553
No 37
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=96.59 E-value=0.13 Score=51.54 Aligned_cols=195 Identities=13% Similarity=0.057 Sum_probs=101.1
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~ 149 (647)
.++...| ++.++++|+. + +.+..||+.+.+........ ........+.+ ++.+++.|+..
T Consensus 101 ~~~~~~~--~~~~l~~~~~--d-------~~i~~~d~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d----- 162 (337)
T 1gxr_A 101 RSCKLLP--DGCTLIVGGE--A-------STLSIWDLAAPTPRIKAELT--SSAPACYALAISPDSKVCFSCCSD----- 162 (337)
T ss_dssp EEEEECT--TSSEEEEEES--S-------SEEEEEECCCC--EEEEEEE--CSSSCEEEEEECTTSSEEEEEETT-----
T ss_pred EEEEEcC--CCCEEEEEcC--C-------CcEEEEECCCCCcceeeecc--cCCCceEEEEECCCCCEEEEEeCC-----
Confidence 3445555 5666666662 1 36888999887754332211 11111222233 45566666642
Q ss_pred ccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCC
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (647)
..+.+||+.+......-. ..... -.+++.. ++.+++.|+.. ..+.+||+.+.+-......
T Consensus 163 ------g~v~~~d~~~~~~~~~~~--~~~~~-i~~~~~~~~~~~l~~~~~d---------g~i~~~d~~~~~~~~~~~~- 223 (337)
T 1gxr_A 163 ------GNIAVWDLHNQTLVRQFQ--GHTDG-ASCIDISNDGTKLWTGGLD---------NTVRSWDLREGRQLQQHDF- 223 (337)
T ss_dssp ------SCEEEEETTTTEEEEEEC--CCSSC-EEEEEECTTSSEEEEEETT---------SEEEEEETTTTEEEEEEEC-
T ss_pred ------CcEEEEeCCCCceeeeee--cccCc-eEEEEECCCCCEEEEEecC---------CcEEEEECCCCceEeeecC-
Confidence 458899998876443322 11111 1222222 55666666642 4688999887654333221
Q ss_pred CCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-C
Q 006384 229 GSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-K 306 (647)
Q Consensus 229 ~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~ 306 (647)
+.+ -.+++.. ++.++++|+.++. +.+||+.+..-..+.. ....-.++++. +
T Consensus 224 ----~~~--v~~~~~s~~~~~l~~~~~~~~----------------i~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~ 276 (337)
T 1gxr_A 224 ----TSQ--IFSLGYCPTGEWLAVGMESSN----------------VEVLHVNKPDKYQLHL-----HESCVLSLKFAYC 276 (337)
T ss_dssp ----SSC--EEEEEECTTSSEEEEEETTSC----------------EEEEETTSSCEEEECC-----CSSCEEEEEECTT
T ss_pred ----CCc--eEEEEECCCCCEEEEEcCCCc----------------EEEEECCCCCeEEEcC-----CccceeEEEECCC
Confidence 111 2233333 5667777776544 7888887665333321 11112233333 5
Q ss_pred CeEEEecceeccccCccccccccCCcEEEEECCCCcEE
Q 006384 307 KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (647)
Q Consensus 307 ~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (647)
+.+++.|+.. ..|.+||+.+..-.
T Consensus 277 ~~~l~~~~~d--------------g~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 277 GKWFVSTGKD--------------NLLNAWRTPYGASI 300 (337)
T ss_dssp SSEEEEEETT--------------SEEEEEETTTCCEE
T ss_pred CCEEEEecCC--------------CcEEEEECCCCeEE
Confidence 6677776642 45899998876543
No 38
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=96.51 E-value=0.35 Score=47.49 Aligned_cols=193 Identities=7% Similarity=-0.012 Sum_probs=100.5
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCC
Q 006384 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 71 ~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~ 149 (647)
-+++++.+ ++.||+.... .+.+++||+ +.+...+.... .....+.++.. ++.||+....
T Consensus 101 ~~~i~~~~--~g~l~v~~~~---------~~~i~~~d~-~g~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~------ 160 (299)
T 2z2n_A 101 PYGITEGP--NGDIWFTEMN---------GNRIGRITD-DGKIREYELPN--KGSYPSFITLGSDNALWFTENQ------ 160 (299)
T ss_dssp EEEEEECT--TSCEEEEETT---------TTEEEEECT-TCCEEEEECSS--TTCCEEEEEECTTSCEEEEETT------
T ss_pred ceeeEECC--CCCEEEEecC---------CceEEEECC-CCCEEEecCCC--CCCCCceEEEcCCCCEEEEeCC------
Confidence 34555554 5778776531 136888998 56665543211 11223344443 5678886521
Q ss_pred ccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCC
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (647)
...+++||+ +.+...+.... . ...-+.+++. ++.||+.... .+.+++||+ +.++..+....
T Consensus 161 -----~~~i~~~~~-~g~~~~~~~~~-~-~~~~~~i~~~~~g~l~v~~~~---------~~~i~~~~~-~g~~~~~~~~~ 222 (299)
T 2z2n_A 161 -----NNAIGRITE-SGDITEFKIPT-P-ASGPVGITKGNDDALWFVEII---------GNKIGRITT-SGEITEFKIPT 222 (299)
T ss_dssp -----TTEEEEECT-TCCEEEEECSS-T-TCCEEEEEECTTSSEEEEETT---------TTEEEEECT-TCCEEEEECSS
T ss_pred -----CCEEEEEcC-CCcEEEeeCCC-C-CCcceeEEECCCCCEEEEccC---------CceEEEECC-CCcEEEEECCC
Confidence 256899999 77776653211 1 1112233333 4678876432 246889999 77776553220
Q ss_pred CCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECC
Q 006384 229 GSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKK 307 (647)
Q Consensus 229 ~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~ 307 (647)
+ ...-.+++.. ++.|||...... .+++||+ +.....+.... ....-.++++.++
T Consensus 223 ----~-~~~~~~i~~~~~g~l~v~~~~~~----------------~i~~~d~-~g~~~~~~~~~---~~~~~~~i~~~~g 277 (299)
T 2z2n_A 223 ----P-NARPHAITAGAGIDLWFTEWGAN----------------KIGRLTS-NNIIEEYPIQI---KSAEPHGICFDGE 277 (299)
T ss_dssp ----T-TCCEEEEEECSTTCEEEEETTTT----------------EEEEEET-TTEEEEEECSS---SSCCEEEEEECSS
T ss_pred ----C-CCCceeEEECCCCCEEEeccCCc----------------eEEEECC-CCceEEEeCCC---CCCccceEEecCC
Confidence 1 1112233333 567777653222 3888998 44555443211 1112234444456
Q ss_pred eEEEecceeccccCccccccccCCcEEEEECCCC
Q 006384 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (647)
Q Consensus 308 ~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (647)
.||+... .+.|++|++.+.
T Consensus 278 ~l~v~~~---------------~~~l~~~~~~~~ 296 (299)
T 2z2n_A 278 TIWFAME---------------CDKIGKLTLIKD 296 (299)
T ss_dssp CEEEEET---------------TTEEEEEEEC--
T ss_pred CEEEEec---------------CCcEEEEEcCcc
Confidence 6776542 245888888764
No 39
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=96.51 E-value=0.6 Score=45.76 Aligned_cols=199 Identities=6% Similarity=-0.025 Sum_probs=108.5
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCC
Q 006384 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 71 ~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~ 149 (647)
-+++++.+ ++.||+.... .+.+++||+. ..+..+..+. ....-++++.. ++.||+....
T Consensus 17 ~~~i~~d~--~g~l~v~~~~---------~~~v~~~d~~-~~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~------ 76 (299)
T 2z2n_A 17 PYGITVSD--KGKVWITQHK---------ANMISCINLD-GKITEYPLPT--PDAKVMCLTISSDGEVWFTENA------ 76 (299)
T ss_dssp EEEEEECT--TSCEEEEETT---------TTEEEEECTT-CCEEEEECSS--TTCCEEEEEECTTSCEEEEETT------
T ss_pred ccceEECC--CCCEEEEecC---------CCcEEEEcCC-CCeEEecCCc--ccCceeeEEECCCCCEEEeCCC------
Confidence 35566655 6778876431 1368899998 7777654321 11223333332 5678887532
Q ss_pred ccccccCcEEEEECCCCcEEEcccCCCC-CCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccC
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCP-SPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~~~P-~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (647)
...+++||+. ..+..+.. | ....-+.++.. ++.||+.... ...+++||+ +.+...+...
T Consensus 77 -----~~~i~~~~~~-g~~~~~~~---~~~~~~~~~i~~~~~g~l~v~~~~---------~~~i~~~d~-~g~~~~~~~~ 137 (299)
T 2z2n_A 77 -----ANKIGRITKK-GIIKEYTL---PNPDSAPYGITEGPNGDIWFTEMN---------GNRIGRITD-DGKIREYELP 137 (299)
T ss_dssp -----TTEEEEECTT-SCEEEEEC---SSTTCCEEEEEECTTSCEEEEETT---------TTEEEEECT-TCCEEEEECS
T ss_pred -----CCeEEEECCC-CcEEEEeC---CCcCCCceeeEECCCCCEEEEecC---------CceEEEECC-CCCEEEecCC
Confidence 1458899986 55555442 2 12223344443 5788886532 246888998 6666554332
Q ss_pred CCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-
Q 006384 228 FGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH- 305 (647)
Q Consensus 228 ~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~- 305 (647)
.....-.+++.. ++.||+..... ..+++||+ +.+...+... .....-.++++.
T Consensus 138 -----~~~~~~~~i~~~~~g~l~v~~~~~----------------~~i~~~~~-~g~~~~~~~~---~~~~~~~~i~~~~ 192 (299)
T 2z2n_A 138 -----NKGSYPSFITLGSDNALWFTENQN----------------NAIGRITE-SGDITEFKIP---TPASGPVGITKGN 192 (299)
T ss_dssp -----STTCCEEEEEECTTSCEEEEETTT----------------TEEEEECT-TCCEEEEECS---STTCCEEEEEECT
T ss_pred -----CCCCCCceEEEcCCCCEEEEeCCC----------------CEEEEEcC-CCcEEEeeCC---CCCCcceeEEECC
Confidence 111222344444 56788754322 23889998 6666655321 111122334443
Q ss_pred CCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 306 KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 306 ~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
++.||+.... .+.|++||+ +..+..+..
T Consensus 193 ~g~l~v~~~~--------------~~~i~~~~~-~g~~~~~~~ 220 (299)
T 2z2n_A 193 DDALWFVEII--------------GNKIGRITT-SGEITEFKI 220 (299)
T ss_dssp TSSEEEEETT--------------TTEEEEECT-TCCEEEEEC
T ss_pred CCCEEEEccC--------------CceEEEECC-CCcEEEEEC
Confidence 4677775421 245899999 777665543
No 40
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.49 E-value=0.064 Score=53.53 Aligned_cols=154 Identities=7% Similarity=-0.003 Sum_probs=99.3
Q ss_pred eEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceee
Q 006384 128 HQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRY 207 (647)
Q Consensus 128 ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~ 207 (647)
+.+...++.||+..|.. ..+.++|+.+++-..-. ++..-++.+++..+++||+....
T Consensus 58 qGL~~~~~~Ly~stG~~-----------g~v~~iD~~Tgkv~~~~---l~~~~FgeGit~~g~~Ly~ltw~--------- 114 (268)
T 3nok_A 58 QGLVFHQGHFFESTGHQ-----------GTLRQLSLESAQPVWME---RLGNIFAEGLASDGERLYQLTWT--------- 114 (268)
T ss_dssp EEEEEETTEEEEEETTT-----------TEEEECCSSCSSCSEEE---ECTTCCEEEEEECSSCEEEEESS---------
T ss_pred ceEEEECCEEEEEcCCC-----------CEEEEEECCCCcEEeEE---CCCCcceeEEEEeCCEEEEEEcc---------
Confidence 55566689999999853 33889999988643222 23344667788889999998653
Q ss_pred eCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEe
Q 006384 208 YNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (647)
Q Consensus 208 ~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v 287 (647)
-+.+++||+.+.+-..- . +.+-.|.+++..+..||+.-| + +.++.+|+.+.+-...
T Consensus 115 ~~~v~V~D~~Tl~~~~t--i-----~~~~eGwGLt~Dg~~L~vSdG-s----------------~~l~~iDp~T~~v~~~ 170 (268)
T 3nok_A 115 EGLLFTWSGMPPQRERT--T-----RYSGEGWGLCYWNGKLVRSDG-G----------------TMLTFHEPDGFALVGA 170 (268)
T ss_dssp SCEEEEEETTTTEEEEE--E-----ECSSCCCCEEEETTEEEEECS-S----------------SEEEEECTTTCCEEEE
T ss_pred CCEEEEEECCcCcEEEE--E-----eCCCceeEEecCCCEEEEECC-C----------------CEEEEEcCCCCeEEEE
Confidence 46899999998764422 2 222345677777889999876 2 2489999998765443
Q ss_pred ecCCCCCCCc-eeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 288 KKIGMPPGPR-AGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 288 ~~~g~~P~~R-~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
-..+.-+.+. .---+...+++||+-- -..+.|.+.|+.+.+
T Consensus 171 I~V~~~g~~v~~lNeLe~~dG~lyanv--------------w~s~~I~vIDp~TG~ 212 (268)
T 3nok_A 171 VQVKLRGQPVELINELECANGVIYANI--------------WHSSDVLEIDPATGT 212 (268)
T ss_dssp EECEETTEECCCEEEEEEETTEEEEEE--------------TTCSEEEEECTTTCB
T ss_pred EEeCCCCcccccccccEEeCCEEEEEE--------------CCCCeEEEEeCCCCc
Confidence 2211112111 1122445588877421 124789999999886
No 41
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=96.42 E-value=0.11 Score=52.99 Aligned_cols=150 Identities=11% Similarity=0.076 Sum_probs=76.9
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCc
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~ 150 (647)
.++.+.| ++.++++|+. -+.+..||+.+.+|..+..... ....-.+++.. ++.+++.|+..
T Consensus 12 ~~~~~s~--~~~~l~~~~~---------d~~v~i~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~d------ 73 (372)
T 1k8k_C 12 SCHAWNK--DRTQIAICPN---------NHEVHIYEKSGNKWVQVHELKE-HNGQVTGVDWAPDSNRIVTCGTD------ 73 (372)
T ss_dssp CEEEECT--TSSEEEEECS---------SSEEEEEEEETTEEEEEEEEEC-CSSCEEEEEEETTTTEEEEEETT------
T ss_pred EEEEECC--CCCEEEEEeC---------CCEEEEEeCCCCcEEeeeeecC-CCCcccEEEEeCCCCEEEEEcCC------
Confidence 3455555 5677778873 2478899999987665443211 11112223333 45666666642
Q ss_pred cccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCc-eEEeccCC
Q 006384 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK-WQEIKPRF 228 (647)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~-W~~v~~~~ 228 (647)
..+.+||+.+..+....... .....-.+++.. ++.+++.|+.. ..+.+||+.+.. |..+....
T Consensus 74 -----g~i~vwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d---------~~v~i~d~~~~~~~~~~~~~~ 138 (372)
T 1k8k_C 74 -----RNAYVWTLKGRTWKPTLVIL-RINRAARCVRWAPNEKKFAVGSGS---------RVISICYFEQENDWWVCKHIK 138 (372)
T ss_dssp -----SCEEEEEEETTEEEEEEECC-CCSSCEEEEEECTTSSEEEEEETT---------SSEEEEEEETTTTEEEEEEEC
T ss_pred -----CeEEEEECCCCeeeeeEEee-cCCCceeEEEECCCCCEEEEEeCC---------CEEEEEEecCCCcceeeeeee
Confidence 35788888888776554311 111112222222 55667777643 346667666543 33322221
Q ss_pred CCCCCCCceeeeEEEe-CCEEEEEecccCC
Q 006384 229 GSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (647)
Q Consensus 229 ~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~ 257 (647)
. +....-.+++.. ++.+++.|+.++.
T Consensus 139 ~---~~~~~i~~~~~~~~~~~l~~~~~dg~ 165 (372)
T 1k8k_C 139 K---PIRSTVLSLDWHPNSVLLAAGSCDFK 165 (372)
T ss_dssp T---TCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred c---ccCCCeeEEEEcCCCCEEEEEcCCCC
Confidence 0 112222233333 5667777776654
No 42
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=96.33 E-value=0.81 Score=46.03 Aligned_cols=203 Identities=11% Similarity=0.065 Sum_probs=103.4
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEE-EecCCCCCC-----CcceeEEEEE--CCEEEEEeCC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSPP-----PRSAHQAVSW--KNYLYIFGGE 143 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~-~l~s~~~P~-----~R~~ha~v~~--~~~iyv~GG~ 143 (647)
+.+++.|. ++.||+.++. .+.+++||+.+.+-. .+....... +..-+.++.. ++.+|+.+..
T Consensus 92 ~~~~~s~d-g~~l~v~~~~---------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 161 (353)
T 3vgz_A 92 FGATINNT-TQTLWFGNTV---------NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG 161 (353)
T ss_dssp CSEEEETT-TTEEEEEETT---------TTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES
T ss_pred ceEEECCC-CCEEEEEecC---------CCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC
Confidence 34445542 3456666551 147899999887643 333211111 1112334443 4678887632
Q ss_pred cCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCce
Q 006384 144 FTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (647)
Q Consensus 144 ~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W 221 (647)
. -..+++||+.+.+-...-. . .....+.+++. ++.||+... .+.+++||+.+.+-
T Consensus 162 ~----------~~~i~~~d~~~~~~~~~~~--~-~~~~~~~~~~s~dg~~l~~~~~----------~~~i~~~d~~~~~~ 218 (353)
T 3vgz_A 162 K----------ESVIWVVDGGNIKLKTAIQ--N-TGKMSTGLALDSEGKRLYTTNA----------DGELITIDTADNKI 218 (353)
T ss_dssp S----------SCEEEEEETTTTEEEEEEC--C-CCTTCCCCEEETTTTEEEEECT----------TSEEEEEETTTTEE
T ss_pred C----------CceEEEEcCCCCceEEEec--C-CCCccceEEECCCCCEEEEEcC----------CCeEEEEECCCCeE
Confidence 1 1469999998876443322 0 11112223333 446666543 24678899988764
Q ss_pred EEeccCCCCCCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCcee
Q 006384 222 QEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAG 299 (647)
Q Consensus 222 ~~v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~ 299 (647)
........ . .......+++.. ++.||+..... +.+++||+.+.+....-..+ .+
T Consensus 219 ~~~~~~~~-~-~~~~~~~~~~~s~dg~~l~~~~~~~----------------~~v~~~d~~~~~~~~~~~~~---~~--- 274 (353)
T 3vgz_A 219 LSRKKLLD-D-GKEHFFINISLDTARQRAFITDSKA----------------AEVLVVDTRNGNILAKVAAP---ES--- 274 (353)
T ss_dssp EEEEECCC-S-SSCCCEEEEEEETTTTEEEEEESSS----------------SEEEEEETTTCCEEEEEECS---SC---
T ss_pred EEEEEcCC-C-CCCcccceEEECCCCCEEEEEeCCC----------------CEEEEEECCCCcEEEEEEcC---CC---
Confidence 33222210 0 111122223333 55677665332 34889999887655443332 22
Q ss_pred eEEEEE-C-CeEEEecceeccccCccccccccCCcEEEEECCCCcEEE
Q 006384 300 FSMCVH-K-KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (647)
Q Consensus 300 ~s~~~~-~-~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (647)
..+++. + +.+|+.+.. -+.|++||+.+.+...
T Consensus 275 ~~~~~s~dg~~l~v~~~~--------------~~~v~~~d~~~~~~~~ 308 (353)
T 3vgz_A 275 LAVLFNPARNEAYVTHRQ--------------AGKVSVIDAKSYKVVK 308 (353)
T ss_dssp CCEEEETTTTEEEEEETT--------------TTEEEEEETTTTEEEE
T ss_pred ceEEECCCCCEEEEEECC--------------CCeEEEEECCCCeEEE
Confidence 223443 3 446665432 2569999998876543
No 43
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=96.31 E-value=0.27 Score=49.95 Aligned_cols=111 Identities=9% Similarity=0.153 Sum_probs=62.6
Q ss_pred EEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--C--CEEEEEeCCcCCCCC
Q 006384 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--K--NYLYIFGGEFTSPNQ 149 (647)
Q Consensus 74 ~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~--~~iyv~GG~~~~~~~ 149 (647)
+.+.| ++.+++.|+. + ..+.+||+....+..+.... ........+.+ . +.+++.|+..
T Consensus 17 ~~~s~--~~~~l~~~~~--d-------g~i~iw~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~d----- 78 (379)
T 3jrp_A 17 AVLDY--YGKRLATCSS--D-------KTIKIFEVEGETHKLIDTLT--GHEGPVWRVDWAHPKFGTILASCSYD----- 78 (379)
T ss_dssp EEECS--SSSEEEEEET--T-------SCEEEEEEETTEEEEEEEEC--CCSSCEEEEEECCGGGCSEEEEEETT-----
T ss_pred EEEcC--CCCEEEEEEC--C-------CcEEEEecCCCcceeeeEec--CCCCcEEEEEeCCCCCCCEEEEeccC-----
Confidence 44444 5667777762 2 35788888766776554321 11122223333 2 5677777643
Q ss_pred ccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--C--CEEEEEecccCCCCceeeeCcEEEEEcCCC
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--K--HKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~--~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (647)
..+.+||+.+..|..+... ........++.+ + +.+++.|+.. ..+.+||+.+.
T Consensus 79 ------g~v~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~d---------~~i~v~d~~~~ 135 (379)
T 3jrp_A 79 ------GKVLIWKEENGRWSQIAVH--AVHSASVNSVQWAPHEYGPLLLVASSD---------GKVSVVEFKEN 135 (379)
T ss_dssp ------SCEEEEEEETTEEEEEEEE--CCCSSCEEEEEECCGGGCSEEEEEETT---------SEEEEEECCTT
T ss_pred ------CEEEEEEcCCCceeEeeee--cCCCcceEEEEeCCCCCCCEEEEecCC---------CcEEEEecCCC
Confidence 3578889988888766552 222222223333 3 5677777653 45788888765
No 44
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=96.25 E-value=0.53 Score=47.09 Aligned_cols=208 Identities=10% Similarity=-0.010 Sum_probs=102.8
Q ss_pred cceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCC
Q 006384 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPN 148 (647)
Q Consensus 70 ~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~ 148 (647)
.+-+.+..+. ++.||++.-. .+.+++||+.+.....+.... + -.+++.. ++.||+..+
T Consensus 14 ~~Egp~w~~~-~~~l~~~d~~---------~~~i~~~d~~~~~~~~~~~~~----~-~~~i~~~~dG~l~v~~~------ 72 (297)
T 3g4e_A 14 CGESPVWEEV-SNSLLFVDIP---------AKKVCRWDSFTKQVQRVTMDA----P-VSSVALRQSGGYVATIG------ 72 (297)
T ss_dssp BEEEEEEETT-TTEEEEEETT---------TTEEEEEETTTCCEEEEECSS----C-EEEEEEBTTSSEEEEET------
T ss_pred cccCCeEECC-CCEEEEEECC---------CCEEEEEECCCCcEEEEeCCC----c-eEEEEECCCCCEEEEEC------
Confidence 4445555543 4778887652 247899999988765543321 1 1222332 456666531
Q ss_pred CccccccCcEEEEECCCCcEEEcccCCC--CCCcceeEEEEECCEEEEEecccCCCC---ceeeeCcEEEEEcCCCceEE
Q 006384 149 QERFHHYKDFWMLDLKTNQWEQLNLKGC--PSPRSGHRMVLYKHKIIVFGGFYDTLR---EVRYYNDLYVFDLDQFKWQE 223 (647)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~~~--P~~R~~h~~~~~~~~lyv~GG~~~~~~---~~~~~~dv~~yD~~t~~W~~ 223 (647)
+.+++||+.+.+++.+..... +..|....++--+++||+-. ...... .......+|+|++.. +...
T Consensus 73 -------~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~-~~~~~~~~~~~~~~~~l~~~d~~g-~~~~ 143 (297)
T 3g4e_A 73 -------TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGT-MAEETAPAVLERHQGALYSLFPDH-HVKK 143 (297)
T ss_dssp -------TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEE-EECCSBTTBCCTTCEEEEEECTTS-CEEE
T ss_pred -------CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEec-CCcccccccccCCCcEEEEEECCC-CEEE
Confidence 468999999998887754211 22222222222367777632 211100 000124688888753 3333
Q ss_pred eccCCCCCCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeC--CCCeEEEeecCCCCCC-Cce
Q 006384 224 IKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDP--RTWEWSKVKKIGMPPG-PRA 298 (647)
Q Consensus 224 v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~--~t~~W~~v~~~g~~P~-~R~ 298 (647)
+... ...-.+++.. +..||+...... .|++|+. .+............+. ...
T Consensus 144 ~~~~-------~~~pngi~~spdg~~lyv~~~~~~----------------~i~~~~~d~~~G~~~~~~~~~~~~~~~~~ 200 (297)
T 3g4e_A 144 YFDQ-------VDISNGLDWSLDHKIFYYIDSLSY----------------SVDAFDYDLQTGQISNRRSVYKLEKEEQI 200 (297)
T ss_dssp EEEE-------ESBEEEEEECTTSCEEEEEEGGGT----------------EEEEEEECTTTCCEEEEEEEEECCGGGCE
T ss_pred Eeec-------cccccceEEcCCCCEEEEecCCCC----------------cEEEEeccCCCCcccCcEEEEECCCCCCC
Confidence 3221 0111233433 446887765433 3777765 4444322111000111 112
Q ss_pred eeEEEEE-CCeEEEecceeccccCccccccccCCcEEEEECCCCcEE
Q 006384 299 GFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (647)
Q Consensus 299 ~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (647)
-.++++- ++.||+.... -+.|++||+.+.+..
T Consensus 201 p~g~~~d~~G~lwva~~~--------------~~~v~~~d~~tG~~~ 233 (297)
T 3g4e_A 201 PDGMCIDAEGKLWVACYN--------------GGRVIRLDPVTGKRL 233 (297)
T ss_dssp EEEEEEBTTSCEEEEEET--------------TTEEEEECTTTCCEE
T ss_pred CCeeEECCCCCEEEEEcC--------------CCEEEEEcCCCceEE
Confidence 2344443 5677776421 134899999866543
No 45
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=96.18 E-value=0.56 Score=49.04 Aligned_cols=188 Identities=14% Similarity=0.039 Sum_probs=99.0
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCC-CCCC
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-CPSP 179 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~-~P~~ 179 (647)
.+|.+|+.+..++.+.... .....++++.. ++.+|+.++.. ..+++||+.+.+........ ....
T Consensus 102 ~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~-----------~~i~~~d~~~g~~~~~~~~~~~~~~ 168 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFK--TGFQPKSVRFIDNTRLAIPLLED-----------EGMDVLDINSGQTVRLSPPEKYKKK 168 (433)
T ss_dssp CEEECCBTTCSEEEEEEEE--CSSCBCCCEESSSSEEEEEBTTS-----------SSEEEEETTTCCEEEECCCHHHHTT
T ss_pred EEEEECCCCCcceEEEEEc--CCCCceEEEEeCCCeEEEEeCCC-----------CeEEEEECCCCeEeeecCccccccc
Confidence 7888998777655443221 11111222222 67788877632 35899999988776543210 0111
Q ss_pred cceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe--CCEEEEEeccc
Q 006384 180 RSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYS 255 (647)
Q Consensus 180 R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~ 255 (647)
.....++.+ ++.+|+.|+.. ..+.+||+.+.+....-.. ....-.+++.. +..+|+.++.+
T Consensus 169 ~~~v~~~~~~~~~~~~~s~~~d---------~~v~~~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~ 233 (433)
T 3bws_A 169 LGFVETISIPEHNELWVSQMQA---------NAVHVFDLKTLAYKATVDL------TGKWSKILLYDPIRDLVYCSNWIS 233 (433)
T ss_dssp CCEEEEEEEGGGTEEEEEEGGG---------TEEEEEETTTCCEEEEEEC------SSSSEEEEEEETTTTEEEEEETTT
T ss_pred CCceeEEEEcCCCEEEEEECCC---------CEEEEEECCCceEEEEEcC------CCCCeeEEEEcCCCCEEEEEecCC
Confidence 112222333 67888887742 4688999987654332211 11111233333 45677766544
Q ss_pred CCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEecceeccccCccccccccCCcEE
Q 006384 256 KEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELY 334 (647)
Q Consensus 256 ~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~ 334 (647)
+ .+++||+.+.+....-. ....-.++++. ++..+++++....... .--..|+
T Consensus 234 ~----------------~i~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~g~~l~~~~~~~~~~~------~~dg~i~ 286 (433)
T 3bws_A 234 E----------------DISVIDRKTKLEIRKTD-----KIGLPRGLLLSKDGKELYIAQFSASNQE------SGGGRLG 286 (433)
T ss_dssp T----------------EEEEEETTTTEEEEECC-----CCSEEEEEEECTTSSEEEEEEEESCTTC------SCCEEEE
T ss_pred C----------------cEEEEECCCCcEEEEec-----CCCCceEEEEcCCCCEEEEEECCCCccc------cCCCeEE
Confidence 3 38899998876644322 12222333443 4555666554321000 0124699
Q ss_pred EEECCCCcEE
Q 006384 335 GFQLDNHRWY 344 (647)
Q Consensus 335 ~yd~~t~~W~ 344 (647)
+||+.+.+-.
T Consensus 287 ~~d~~~~~~~ 296 (433)
T 3bws_A 287 IYSMDKEKLI 296 (433)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCcEE
Confidence 9999877543
No 46
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=96.11 E-value=0.2 Score=51.01 Aligned_cols=200 Identities=11% Similarity=0.105 Sum_probs=102.3
Q ss_pred CEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--C--CEEEEEeCCcCCCCCccccccCc
Q 006384 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--K--NYLYIFGGEFTSPNQERFHHYKD 157 (647)
Q Consensus 82 ~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~--~~iyv~GG~~~~~~~~~~~~~~d 157 (647)
+.+++.|+. + ..+..||+.+..|..+.... ........+.+ . +.++++|+.. ..
T Consensus 69 ~~~l~s~~~--d-------g~v~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~d-----------~~ 126 (379)
T 3jrp_A 69 GTILASCSY--D-------GKVLIWKEENGRWSQIAVHA--VHSASVNSVQWAPHEYGPLLLVASSD-----------GK 126 (379)
T ss_dssp CSEEEEEET--T-------SCEEEEEEETTEEEEEEEEC--CCSSCEEEEEECCGGGCSEEEEEETT-----------SE
T ss_pred CCEEEEecc--C-------CEEEEEEcCCCceeEeeeec--CCCcceEEEEeCCCCCCCEEEEecCC-----------Cc
Confidence 567777762 2 36888999999877554322 11122223333 2 5677777642 45
Q ss_pred EEEEECCCCcE-EEcccCCCCCCcceeEEEEE--------------CCEEEEEecccCCCCceeeeCcEEEEEcCCCc--
Q 006384 158 FWMLDLKTNQW-EQLNLKGCPSPRSGHRMVLY--------------KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK-- 220 (647)
Q Consensus 158 v~~yD~~t~~W-~~~~~~~~P~~R~~h~~~~~--------------~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~-- 220 (647)
+.+||+.+... ......+ ....-.+++.. ++.+++.|+.+ ..+.+||+.+..
T Consensus 127 i~v~d~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~ 195 (379)
T 3jrp_A 127 VSVVEFKENGTTSPIIIDA--HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD---------NLVKIWKYNSDAQT 195 (379)
T ss_dssp EEEEECCTTSCCCEEEEEC--CTTCEEEEEECCCC----------CTTCEEEEEETT---------SCEEEEEEETTTTE
T ss_pred EEEEecCCCCceeeEEecC--CCCceEEEEEcCccccccccccCCCCCCEEEEEeCC---------CeEEEEEecCCCcc
Confidence 78888876632 1111101 11111122222 36777777753 357778876543
Q ss_pred eEEeccCCCCCCCCCceeeeEEEe-C---CEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCC--eEEEeecCCCCC
Q 006384 221 WQEIKPRFGSMWPSPRSGFQFFVY-Q---DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPP 294 (647)
Q Consensus 221 W~~v~~~~~~~~P~~R~~~s~~~~-~---~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~v~~~g~~P 294 (647)
|..+..... ....-.+++.. + +.+++.|+.++. +.+||+.+. .+...... ...
T Consensus 196 ~~~~~~~~~----h~~~v~~~~~sp~~~~~~~l~s~~~dg~----------------i~iwd~~~~~~~~~~~~~~-~~~ 254 (379)
T 3jrp_A 196 YVLESTLEG----HSDWVRDVAWSPTVLLRSYLASVSQDRT----------------CIIWTQDNEQGPWKKTLLK-EEK 254 (379)
T ss_dssp EEEEEEECC----CSSCEEEEEECCCCSSSEEEEEEETTSC----------------EEEEEESSTTSCCEEEESS-SSC
T ss_pred eeeEEEEec----ccCcEeEEEECCCCCCCCeEEEEeCCCE----------------EEEEeCCCCCccceeeeec-ccc
Confidence 544433311 11112233333 3 688888887655 666776554 22222111 001
Q ss_pred CCceeeEEEEE-CCeEEEecceeccccCccccccccCCcEEEEECC-CCcEEEeEec
Q 006384 295 GPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD-NHRWYPLELR 349 (647)
Q Consensus 295 ~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~-t~~W~~l~~~ 349 (647)
....-.++++. ++.++++|+.. ..|.+|++. ...|..+...
T Consensus 255 ~~~~v~~~~~s~~g~~l~~~~~d--------------g~i~iw~~~~~~~~~~~~~~ 297 (379)
T 3jrp_A 255 FPDVLWRASWSLSGNVLALSGGD--------------NKVTLWKENLEGKWEPAGEV 297 (379)
T ss_dssp CSSCEEEEEECSSSCCEEEEESS--------------SSEEEEEEEETTEEEEEEEE
T ss_pred CCCcEEEEEEcCCCCEEEEecCC--------------CcEEEEeCCCCCccccccce
Confidence 11122233333 56677777643 348888876 5688887764
No 47
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.05 E-value=0.53 Score=49.73 Aligned_cols=185 Identities=11% Similarity=0.142 Sum_probs=100.5
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~ 160 (647)
++.+++.|+. + +.+.+||..+.+-...-.. ......++.+++.+++.|+.. ..+.+
T Consensus 142 d~~~l~~g~~--d-------g~i~iwd~~~~~~~~~~~~----h~~~v~~l~~~~~~l~sg~~d-----------g~i~v 197 (435)
T 1p22_A 142 DDQKIVSGLR--D-------NTIKIWDKNTLECKRILTG----HTGSVLCLQYDERVIITGSSD-----------STVRV 197 (435)
T ss_dssp CSSEEEEEES--S-------SCEEEEESSSCCEEEEECC----CSSCEEEEECCSSEEEEEETT-----------SCEEE
T ss_pred CCCEEEEEeC--C-------CeEEEEeCCCCeEEEEEcC----CCCcEEEEEECCCEEEEEcCC-----------CeEEE
Confidence 5667777773 2 4688899887765433221 112223344477777887753 35888
Q ss_pred EECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEe-ccCCCCCCCCCceee
Q 006384 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI-KPRFGSMWPSPRSGF 239 (647)
Q Consensus 161 yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v-~~~~~~~~P~~R~~~ 239 (647)
||+.+......-. .....-.++.+.+.+++.|+.+ ..+.+||+.+..-... ... .......
T Consensus 198 wd~~~~~~~~~~~----~h~~~v~~l~~~~~~l~s~s~d---------g~i~vwd~~~~~~~~~~~~~-----~~~~~~v 259 (435)
T 1p22_A 198 WDVNTGEMLNTLI----HHCEAVLHLRFNNGMMVTCSKD---------RSIAVWDMASPTDITLRRVL-----VGHRAAV 259 (435)
T ss_dssp EESSSCCEEEEEC----CCCSCEEEEECCTTEEEEEETT---------SCEEEEECSSSSCCEEEEEE-----CCCSSCE
T ss_pred EECCCCcEEEEEc----CCCCcEEEEEEcCCEEEEeeCC---------CcEEEEeCCCCCCceeeeEe-----cCCCCcE
Confidence 9998876433221 1122223444455567777653 4688888876543211 111 0111111
Q ss_pred eEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccc
Q 006384 240 QFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDME 319 (647)
Q Consensus 240 s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~ 319 (647)
..+..++.+++.|+.++. +.+||+.+..-...-.. ......++..++.+++.|+..
T Consensus 260 ~~~~~~~~~l~s~~~dg~----------------i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~l~~g~~d--- 315 (435)
T 1p22_A 260 NVVDFDDKYIVSASGDRT----------------IKVWNTSTCEFVRTLNG-----HKRGIACLQYRDRLVVSGSSD--- 315 (435)
T ss_dssp EEEEEETTEEEEEETTSE----------------EEEEETTTCCEEEEEEC-----CSSCEEEEEEETTEEEEEETT---
T ss_pred EEEEeCCCEEEEEeCCCe----------------EEEEECCcCcEEEEEcC-----CCCcEEEEEeCCCEEEEEeCC---
Confidence 222336666777776554 77888877643332211 111223334466777777643
Q ss_pred cCccccccccCCcEEEEECCCCc
Q 006384 320 MKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 320 ~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
+.|.+||+.+..
T Consensus 316 -----------g~i~iwd~~~~~ 327 (435)
T 1p22_A 316 -----------NTIRLWDIECGA 327 (435)
T ss_dssp -----------SCEEEEETTTCC
T ss_pred -----------CeEEEEECCCCC
Confidence 458999988754
No 48
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=96.03 E-value=1.3 Score=43.45 Aligned_cols=207 Identities=10% Similarity=0.055 Sum_probs=108.3
Q ss_pred cceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCC-CC-CcceeEEEEE--CCEEEEEeCCcC
Q 006384 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNS-PP-PRSAHQAVSW--KNYLYIFGGEFT 145 (647)
Q Consensus 70 ~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~-P~-~R~~ha~v~~--~~~iyv~GG~~~ 145 (647)
.-.++++.+ ++.|||.+.. .+.+.+||+.......+..... +. ...-+.++.. ++.|||.+...
T Consensus 31 ~p~~v~~~~--~g~l~v~~~~---------~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~- 98 (286)
T 1q7f_A 31 EPSGVAVNA--QNDIIVADTN---------NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP- 98 (286)
T ss_dssp CEEEEEECT--TCCEEEEEGG---------GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG-
T ss_pred CCceEEECC--CCCEEEEECC---------CCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCC-
Confidence 334555554 5778887642 2468899988665555432110 11 1123344443 57899886421
Q ss_pred CCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEe
Q 006384 146 SPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (647)
Q Consensus 146 ~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (647)
...+.+||.....-..+.. +....-+.+++. +++||+.... .+.+++||+.......+
T Consensus 99 ---------~~~i~~~d~~g~~~~~~~~---~~~~~~~~i~~~~~g~l~v~~~~---------~~~i~~~~~~g~~~~~~ 157 (286)
T 1q7f_A 99 ---------THQIQIYNQYGQFVRKFGA---TILQHPRGVTVDNKGRIIVVECK---------VMRVIIFDQNGNVLHKF 157 (286)
T ss_dssp ---------GCEEEEECTTSCEEEEECT---TTCSCEEEEEECTTSCEEEEETT---------TTEEEEECTTSCEEEEE
T ss_pred ---------CCEEEEECCCCcEEEEecC---ccCCCceEEEEeCCCCEEEEECC---------CCEEEEEcCCCCEEEEe
Confidence 2468899965444333332 111122333333 5678886542 24688899765544444
Q ss_pred ccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEE
Q 006384 225 KPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMC 303 (647)
Q Consensus 225 ~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~ 303 (647)
... .....-.++++. ++.|||.+.... .+++|++.......+...+.. ..-.+++
T Consensus 158 ~~~-----~~~~~p~~i~~~~~g~l~v~~~~~~----------------~i~~~~~~g~~~~~~~~~g~~---~~p~~i~ 213 (286)
T 1q7f_A 158 GCS-----KHLEFPNGVVVNDKQEIFISDNRAH----------------CVKVFNYEGQYLRQIGGEGIT---NYPIGVG 213 (286)
T ss_dssp ECT-----TTCSSEEEEEECSSSEEEEEEGGGT----------------EEEEEETTCCEEEEESCTTTS---CSEEEEE
T ss_pred CCC-----CccCCcEEEEECCCCCEEEEECCCC----------------EEEEEcCCCCEEEEEccCCcc---CCCcEEE
Confidence 321 011111233333 678888765433 388999876655444322211 1223344
Q ss_pred EE-CCeEEEecceeccccCccccccccCC-cEEEEECCCCcEEEeE
Q 006384 304 VH-KKRALLFGGVVDMEMKGDVIMSLFLN-ELYGFQLDNHRWYPLE 347 (647)
Q Consensus 304 ~~-~~~iyifGG~~~~~~~~~~~~~~~~n-dl~~yd~~t~~W~~l~ 347 (647)
+- ++.||+.... .+ .|.+||+....-..+.
T Consensus 214 ~d~~G~l~v~~~~--------------~~~~i~~~~~~g~~~~~~~ 245 (286)
T 1q7f_A 214 INSNGEILIADNH--------------NNFNLTIFTQDGQLISALE 245 (286)
T ss_dssp ECTTCCEEEEECS--------------SSCEEEEECTTSCEEEEEE
T ss_pred ECCCCCEEEEeCC--------------CCEEEEEECCCCCEEEEEc
Confidence 43 5678877642 12 6899997655444443
No 49
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=95.94 E-value=0.5 Score=49.45 Aligned_cols=204 Identities=11% Similarity=0.036 Sum_probs=107.0
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCC-CCCCCcceeEEEEE--CCEEEEEeCCcCCCCC
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSP-NSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~-~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~ 149 (647)
++++.| ++.+|+.++. + +.+++||+.+.+....... ..+........+.+ ++.+|+.|+..
T Consensus 127 ~~~~s~--~~~~~~~~~~--~-------~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d----- 190 (433)
T 3bws_A 127 SVRFID--NTRLAIPLLE--D-------EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA----- 190 (433)
T ss_dssp CCEESS--SSEEEEEBTT--S-------SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG-----
T ss_pred EEEEeC--CCeEEEEeCC--C-------CeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC-----
Confidence 455665 6788887762 1 3689999998877654321 00111112223344 67888887632
Q ss_pred ccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccC
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (647)
..+.+||+.+.+....-. .. ...-..++.. +..+|+.++.. ..+++||+.+.+.......
T Consensus 191 ------~~v~~~d~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~l~~~~~~~---------~~i~~~d~~~~~~~~~~~~ 252 (433)
T 3bws_A 191 ------NAVHVFDLKTLAYKATVD--LT-GKWSKILLYDPIRDLVYCSNWIS---------EDISVIDRKTKLEIRKTDK 252 (433)
T ss_dssp ------TEEEEEETTTCCEEEEEE--CS-SSSEEEEEEETTTTEEEEEETTT---------TEEEEEETTTTEEEEECCC
T ss_pred ------CEEEEEECCCceEEEEEc--CC-CCCeeEEEEcCCCCEEEEEecCC---------CcEEEEECCCCcEEEEecC
Confidence 468899998865433221 11 1122223333 44676666432 4689999988765433221
Q ss_pred CCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-
Q 006384 228 FGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH- 305 (647)
Q Consensus 228 ~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~- 305 (647)
...-.+++.. ++..+++++..... ....-..+++||+.+.+-...... +. ....+++.
T Consensus 253 -------~~~~~~~~~~~~g~~l~~~~~~~~~--------~~~~dg~i~~~d~~~~~~~~~~~~---~~--~~~~~~~~~ 312 (433)
T 3bws_A 253 -------IGLPRGLLLSKDGKELYIAQFSASN--------QESGGGRLGIYSMDKEKLIDTIGP---PG--NKRHIVSGN 312 (433)
T ss_dssp -------CSEEEEEEECTTSSEEEEEEEESCT--------TCSCCEEEEEEETTTTEEEEEEEE---EE--CEEEEEECS
T ss_pred -------CCCceEEEEcCCCCEEEEEECCCCc--------cccCCCeEEEEECCCCcEEeeccC---CC--CcceEEECC
Confidence 1122333333 44455555543220 000124688999987754443211 11 11223332
Q ss_pred CC-eEEEecceeccccCccccccccCCcEEEEECCCCcEE
Q 006384 306 KK-RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (647)
Q Consensus 306 ~~-~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (647)
++ .+|+.++. -+.|.+||+.+.+-.
T Consensus 313 ~g~~l~~~~~~--------------~~~v~v~d~~~~~~~ 338 (433)
T 3bws_A 313 TENKIYVSDMC--------------CSKIEVYDLKEKKVQ 338 (433)
T ss_dssp STTEEEEEETT--------------TTEEEEEETTTTEEE
T ss_pred CCCEEEEEecC--------------CCEEEEEECCCCcEE
Confidence 33 57676543 246999999876533
No 50
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=95.90 E-value=1.4 Score=42.96 Aligned_cols=200 Identities=7% Similarity=-0.033 Sum_probs=105.2
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCC
Q 006384 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 71 ~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~ 149 (647)
-+++++.+ ++.||+.... .+.+++||+. .++..+..+. ....-+.++.. ++.||+....
T Consensus 64 ~~~i~~~~--~g~l~v~~~~---------~~~v~~~d~~-g~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~------ 123 (300)
T 2qc5_A 64 VMCLIVSS--LGDIWFTENG---------ANKIGKLSKK-GGFTEYPLPQ--PDSGPYGITEGLNGDIWFTQLN------ 123 (300)
T ss_dssp EEEEEECT--TSCEEEEETT---------TTEEEEECTT-SCEEEEECSS--TTCCEEEEEECSTTCEEEEETT------
T ss_pred ceeEEECC--CCCEEEEecC---------CCeEEEECCC-CCeEEecCCC--CCCCCccceECCCCCEEEEccC------
Confidence 34555554 5778876531 1368899988 6666554321 11223344443 5778887532
Q ss_pred ccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCC
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (647)
...+++||+. .+........ ....-+.+++- +++||+.... .+.+++||+ +.+...+....
T Consensus 124 -----~~~i~~~~~~-g~~~~~~~~~--~~~~~~~i~~d~~g~l~v~~~~---------~~~i~~~~~-~g~~~~~~~~~ 185 (300)
T 2qc5_A 124 -----GDRIGKLTAD-GTIYEYDLPN--KGSYPAFITLGSDNALWFTENQ---------NNSIGRITN-TGKLEEYPLPT 185 (300)
T ss_dssp -----TTEEEEECTT-SCEEEEECSS--TTCCEEEEEECTTSSEEEEETT---------TTEEEEECT-TCCEEEEECSS
T ss_pred -----CCeEEEECCC-CCEEEccCCC--CCCCceeEEECCCCCEEEEecC---------CCeEEEECC-CCcEEEeeCCC
Confidence 1468899987 6665443210 11222333332 5678875431 246889998 66666553220
Q ss_pred CCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-C
Q 006384 229 GSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-K 306 (647)
Q Consensus 229 ~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~ 306 (647)
....-.+++.. ++.||+...... .+++|++ +..+...... .....-.++++- +
T Consensus 186 -----~~~~~~~i~~d~~g~l~v~~~~~~----------------~i~~~~~-~g~~~~~~~~---~~~~~~~~i~~d~~ 240 (300)
T 2qc5_A 186 -----NAAAPVGITSGNDGALWFVEIMGN----------------KIGRITT-TGEISEYDIP---TPNARPHAITAGKN 240 (300)
T ss_dssp -----TTCCEEEEEECTTSSEEEEETTTT----------------EEEEECT-TCCEEEEECS---STTCCEEEEEECST
T ss_pred -----CCCCcceEEECCCCCEEEEccCCC----------------EEEEEcC-CCcEEEEECC---CCCCCceEEEECCC
Confidence 11112233333 567877643222 3788888 5555554321 111122333333 5
Q ss_pred CeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 307 KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 307 ~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
+.||+.... .+.|++||+ +.+...+..
T Consensus 241 g~l~v~~~~--------------~~~i~~~~~-~g~~~~~~~ 267 (300)
T 2qc5_A 241 SEIWFTEWG--------------ANQIGRITN-DNTIQEYQL 267 (300)
T ss_dssp TCEEEEETT--------------TTEEEEECT-TSCEEEEEC
T ss_pred CCEEEeccC--------------CCeEEEECC-CCcEEEEEC
Confidence 677776421 256899998 456665443
No 51
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=95.90 E-value=0.59 Score=49.66 Aligned_cols=160 Identities=14% Similarity=0.103 Sum_probs=77.5
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECC--CCeEE-EecCCCCCCCcceeEEEEE--CCEEEEEeCCcCC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVE--KQEWK-VISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTS 146 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~--~~~W~-~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~ 146 (647)
.++.+.|. +..|++.|+. + +.+.+||+. +.... .+.... .+.. ...+.+ ++.++++|+.
T Consensus 106 ~~~~~s~d-~~~l~~~~~~--d-------g~v~iwd~~~~~~~~~~~~~~~~--~~~~-v~~~~~sp~~~~l~~~~~--- 169 (450)
T 2vdu_B 106 RNLRLTSD-ESRLIACADS--D-------KSLLVFDVDKTSKNVLKLRKRFC--FSKR-PNAISIAEDDTTVIIADK--- 169 (450)
T ss_dssp EEEEECTT-SSEEEEEEGG--G-------TEEEEEEECSSSSSCEEEEEEEE--CSSC-EEEEEECTTSSEEEEEET---
T ss_pred EEEEEcCC-CCEEEEEECC--C-------CeEEEEECcCCCCceeeeeeccc--CCCC-ceEEEEcCCCCEEEEEeC---
Confidence 34455552 3455677873 2 357777876 44322 221100 1111 122333 4556666653
Q ss_pred CCCccccccCcEEEEECCCCcEEEcccCCC--CCCcceeEEEE-EC---CEEEEEecccCCCCceeeeCcEEEEEcCCCc
Q 006384 147 PNQERFHHYKDFWMLDLKTNQWEQLNLKGC--PSPRSGHRMVL-YK---HKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (647)
Q Consensus 147 ~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~--P~~R~~h~~~~-~~---~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (647)
...++.|++.+........... ..... .+++. -+ +++++.|+.+ ..+.+||+.+.+
T Consensus 170 --------~g~v~~~~~~~~~~~~~~~~~~~~h~~~v-~~~~~sp~~~~~~~l~s~~~d---------~~i~vwd~~~~~ 231 (450)
T 2vdu_B 170 --------FGDVYSIDINSIPEEKFTQEPILGHVSML-TDVHLIKDSDGHQFIITSDRD---------EHIKISHYPQCF 231 (450)
T ss_dssp --------TSEEEEEETTSCCCSSCCCCCSEECSSCE-EEEEEEECTTSCEEEEEEETT---------SCEEEEEESCTT
T ss_pred --------CCcEEEEecCCcccccccceeeecccCce-EEEEEcCCCCCCcEEEEEcCC---------CcEEEEECCCCc
Confidence 1458888887654321000001 11111 12222 25 7777887753 468888888765
Q ss_pred eEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEE
Q 006384 221 WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (647)
Q Consensus 221 W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (647)
......... ..+. .+++..++.+++.|+.++. |.+||+.+.+...
T Consensus 232 ~~~~~~~~h---~~~v--~~~~~sd~~~l~s~~~d~~----------------v~vwd~~~~~~~~ 276 (450)
T 2vdu_B 232 IVDKWLFGH---KHFV--SSICCGKDYLLLSAGGDDK----------------IFAWDWKTGKNLS 276 (450)
T ss_dssp CEEEECCCC---SSCE--EEEEECSTTEEEEEESSSE----------------EEEEETTTCCEEE
T ss_pred eeeeeecCC---CCce--EEEEECCCCEEEEEeCCCe----------------EEEEECCCCcEee
Confidence 443211100 1111 1222226777778876544 7888887765433
No 52
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=95.86 E-value=0.29 Score=48.79 Aligned_cols=194 Identities=14% Similarity=0.132 Sum_probs=99.3
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeE----EEecCCCCCCCcceeEEEEE--CCEEEEEeCCcC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW----KVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFT 145 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W----~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~ 145 (647)
.++.+.| ++.+++.|+ + +.+..||+.+... ..+... ........+.+ ++.++++|+..
T Consensus 55 ~~~~~~~--~~~~l~~~~---d-------g~i~iw~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d- 118 (337)
T 1gxr_A 55 CAVTISN--PTRHVYTGG---K-------GCVKVWDISHPGNKSPVSQLDCL---NRDNYIRSCKLLPDGCTLIVGGEA- 118 (337)
T ss_dssp CEEEECS--SSSEEEEEC---B-------SEEEEEETTSTTCCSCSEEEECS---CTTSBEEEEEECTTSSEEEEEESS-
T ss_pred EEEEEec--CCcEEEEcC---C-------CeEEEEECCCCCceeeeeccccc---CCCCcEEEEEEcCCCCEEEEEcCC-
Confidence 3445555 566777776 2 3678888876532 111110 11112222333 45566666532
Q ss_pred CCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEe
Q 006384 146 SPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (647)
Q Consensus 146 ~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (647)
..+.+||+.+............... -.+++.. ++.+++.|+.. ..+.+||+.+.+....
T Consensus 119 ----------~~i~~~d~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~d---------g~v~~~d~~~~~~~~~ 178 (337)
T 1gxr_A 119 ----------STLSIWDLAAPTPRIKAELTSSAPA-CYALAISPDSKVCFSCCSD---------GNIAVWDLHNQTLVRQ 178 (337)
T ss_dssp ----------SEEEEEECCCC--EEEEEEECSSSC-EEEEEECTTSSEEEEEETT---------SCEEEEETTTTEEEEE
T ss_pred ----------CcEEEEECCCCCcceeeecccCCCc-eEEEEECCCCCEEEEEeCC---------CcEEEEeCCCCceeee
Confidence 4688999988875443321111111 1122222 55666677642 4588999987754433
Q ss_pred ccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEE
Q 006384 225 KPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMC 303 (647)
Q Consensus 225 ~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~ 303 (647)
-.. ....-.+++.. ++.+++.|+.++. +.+||+.+..-...... ...-.+++
T Consensus 179 ~~~------~~~~i~~~~~~~~~~~l~~~~~dg~----------------i~~~d~~~~~~~~~~~~-----~~~v~~~~ 231 (337)
T 1gxr_A 179 FQG------HTDGASCIDISNDGTKLWTGGLDNT----------------VRSWDLREGRQLQQHDF-----TSQIFSLG 231 (337)
T ss_dssp ECC------CSSCEEEEEECTTSSEEEEEETTSE----------------EEEEETTTTEEEEEEEC-----SSCEEEEE
T ss_pred eec------ccCceEEEEECCCCCEEEEEecCCc----------------EEEEECCCCceEeeecC-----CCceEEEE
Confidence 221 11112233333 5667777776544 88899877654433221 11122333
Q ss_pred EE-CCeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 304 VH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 304 ~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
+. ++.++++|+.. ..|.+||+.+..
T Consensus 232 ~s~~~~~l~~~~~~--------------~~i~~~~~~~~~ 257 (337)
T 1gxr_A 232 YCPTGEWLAVGMES--------------SNVEVLHVNKPD 257 (337)
T ss_dssp ECTTSSEEEEEETT--------------SCEEEEETTSSC
T ss_pred ECCCCCEEEEEcCC--------------CcEEEEECCCCC
Confidence 33 56677777532 458999988765
No 53
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=95.83 E-value=0.8 Score=45.57 Aligned_cols=194 Identities=12% Similarity=0.102 Sum_probs=100.4
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCc
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQE 150 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~ 150 (647)
++.+.| ++.+++.|+. + ..+..|+..+......-... ......+.+ ++.+++.|+..
T Consensus 28 ~~~~s~--~~~~l~s~~~--d-------g~i~iw~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~~~d------ 86 (312)
T 4ery_A 28 SVKFSP--NGEWLASSSA--D-------KLIKIWGAYDGKFEKTISGH----KLGISDVAWSSDSNLLVSASDD------ 86 (312)
T ss_dssp EEEECT--TSSEEEEEET--T-------SCEEEEETTTCCEEEEECCC----SSCEEEEEECTTSSEEEEEETT------
T ss_pred EEEECC--CCCEEEEeeC--C-------CeEEEEeCCCcccchhhccC----CCceEEEEEcCCCCEEEEECCC------
Confidence 445555 5667777772 2 35778888877765443221 112222333 45677777642
Q ss_pred cccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCC
Q 006384 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGS 230 (647)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~ 230 (647)
..+.+||+.+..-...-. ............-++.+++.|+.+ ..+.+||+.+.+-...-..
T Consensus 87 -----~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~--- 147 (312)
T 4ery_A 87 -----KTLKIWDVSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFD---------ESVRIWDVKTGKCLKTLPA--- 147 (312)
T ss_dssp -----SEEEEEETTTCCEEEEEE--CCSSCEEEEEECSSSSEEEEEETT---------SCEEEEETTTCCEEEEECC---
T ss_pred -----CEEEEEECCCCcEEEEEc--CCCCCEEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCEEEEEecC---
Confidence 458889988775432211 111111111111245667777753 3588899887654322111
Q ss_pred CCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCe
Q 006384 231 MWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKR 308 (647)
Q Consensus 231 ~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~ 308 (647)
....-.+++.. ++.+++.|+.++. +.+||+.+.+-...-... .... -..+++. ++.
T Consensus 148 ---~~~~v~~~~~~~~~~~l~~~~~d~~----------------i~~wd~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~ 205 (312)
T 4ery_A 148 ---HSDPVSAVHFNRDGSLIVSSSYDGL----------------CRIWDTASGQCLKTLIDD--DNPP-VSFVKFSPNGK 205 (312)
T ss_dssp ---CSSCEEEEEECTTSSEEEEEETTSC----------------EEEEETTTCCEEEEECCS--SCCC-EEEEEECTTSS
T ss_pred ---CCCcEEEEEEcCCCCEEEEEeCCCc----------------EEEEECCCCceeeEEecc--CCCc-eEEEEECCCCC
Confidence 11111122222 5667788877655 788898776543322111 1111 1222222 566
Q ss_pred EEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 309 ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 309 iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
.++.|+.. +.|.+||+.+.+
T Consensus 206 ~l~~~~~d--------------~~i~iwd~~~~~ 225 (312)
T 4ery_A 206 YILAATLD--------------NTLKLWDYSKGK 225 (312)
T ss_dssp EEEEEETT--------------TEEEEEETTTTE
T ss_pred EEEEEcCC--------------CeEEEEECCCCc
Confidence 66666532 458999987754
No 54
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=95.67 E-value=0.79 Score=45.44 Aligned_cols=135 Identities=10% Similarity=0.147 Sum_probs=67.8
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCC-CCcceeEEEEE-C-CEEEEEeCCcCCCC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSP-PPRSAHQAVSW-K-NYLYIFGGEFTSPN 148 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P-~~R~~ha~v~~-~-~~iyv~GG~~~~~~ 148 (647)
.++++.+ ++.||+..+.. .......+.+++||+.+.++..+..+... ....-++++.. + +.|||....
T Consensus 21 ~~~~~~~--~g~l~~~~~~~--~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~----- 91 (314)
T 1pjx_A 21 EGPVFDK--NGDFYIVAPEV--EVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR----- 91 (314)
T ss_dssp EEEEECT--TSCEEEEETTC--EETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-----
T ss_pred cCceECC--CCCEEEEEecc--ccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC-----
Confidence 4455554 67888872100 00001234689999988888766431000 11112333333 4 788887641
Q ss_pred CccccccCcEEEEECCCCcEEEc-ccCCCCCC-cceeEEEE-ECCEEEEEecccCCC------CceeeeCcEEEEEcCCC
Q 006384 149 QERFHHYKDFWMLDLKTNQWEQL-NLKGCPSP-RSGHRMVL-YKHKIIVFGGFYDTL------REVRYYNDLYVFDLDQF 219 (647)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~-~~~~~P~~-R~~h~~~~-~~~~lyv~GG~~~~~------~~~~~~~dv~~yD~~t~ 219 (647)
+.+++||+. ++...+ .......+ ..-+.++. -+++||+........ ........+++||+. .
T Consensus 92 -------~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g 162 (314)
T 1pjx_A 92 -------LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G 162 (314)
T ss_dssp -------TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S
T ss_pred -------CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C
Confidence 358899998 777666 33111111 11223333 267888765321000 000012568999887 5
Q ss_pred ceEEe
Q 006384 220 KWQEI 224 (647)
Q Consensus 220 ~W~~v 224 (647)
+...+
T Consensus 163 ~~~~~ 167 (314)
T 1pjx_A 163 QMIQV 167 (314)
T ss_dssp CEEEE
T ss_pred CEEEe
Confidence 55544
No 55
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=95.67 E-value=0.99 Score=52.09 Aligned_cols=186 Identities=8% Similarity=0.052 Sum_probs=102.4
Q ss_pred cEEEEECCCCeEEEecCCCCCCC-cceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCC
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPP-RSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~-R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~ 179 (647)
-+++||+.+++++.+.......+ ..-.+++.. ++.|||-.. +-+++||+.+++|..+.....+..
T Consensus 428 Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-------------~Gl~~~~~~~~~~~~~~~~~~~~~ 494 (795)
T 4a2l_A 428 GLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-------------SALVRFNPEQRSFTTIEKEKDGTP 494 (795)
T ss_dssp EEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-------------SCEEEEETTTTEEEECCBCTTCCB
T ss_pred ceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-------------CceeEEeCCCCeEEEccccccccc
Confidence 57899999998887754221111 112222222 466777532 348899999999988764211111
Q ss_pred c--ceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccC-CCCCCCCCceeeeEEEe-CCEEEEEec
Q 006384 180 R--SGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR-FGSMWPSPRSGFQFFVY-QDEVFLYGG 253 (647)
Q Consensus 180 R--~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~-~~~~~P~~R~~~s~~~~-~~~Iyv~GG 253 (647)
. ....++.. ++.|||-.. ..+++||+.+.++ .+... .....+. ..-.+++.. ++.|+|-..
T Consensus 495 ~~~~~i~~i~~d~~g~lWigt~-----------~Gl~~~~~~~~~~-~~~~~~~~~~l~~-~~i~~i~~d~~g~lWigT~ 561 (795)
T 4a2l_A 495 VVSKQITTLFRDSHKRLWIGGE-----------EGLSVFKQEGLDI-QKASILPVSNVTK-LFTNCIYEASNGIIWVGTR 561 (795)
T ss_dssp CCCCCEEEEEECTTCCEEEEES-----------SCEEEEEEETTEE-EECCCSCSCGGGG-SCEEEEEECTTSCEEEEES
T ss_pred cCCceEEEEEECCCCCEEEEeC-----------CceEEEeCCCCeE-EEecCCCCCCCCC-CeeEEEEECCCCCEEEEeC
Confidence 1 11112222 567777432 3488999988888 44321 0000111 111222222 566776432
Q ss_pred ccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEecceeccccCccccccccCCc
Q 006384 254 YSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNE 332 (647)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~nd 332 (647)
. . +++||+.+.++.........|.... .+++.- ++.|++.+. +-
T Consensus 562 -~-G----------------l~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lWi~t~----------------~G 606 (795)
T 4a2l_A 562 -E-G----------------FYCFNEKDKQIKRYNTTNGLPNNVV-YGILEDSFGRLWLSTN----------------RG 606 (795)
T ss_dssp -S-C----------------EEEEETTTTEEEEECGGGTCSCSCE-EEEEECTTSCEEEEET----------------TE
T ss_pred -C-C----------------ceeECCCCCcEEEeCCCCCCchhhe-EEEEECCCCCEEEEcC----------------Cc
Confidence 1 3 8899999999888754322343322 233332 466776552 33
Q ss_pred EEEEECCCCcEEEeEe
Q 006384 333 LYGFQLDNHRWYPLEL 348 (647)
Q Consensus 333 l~~yd~~t~~W~~l~~ 348 (647)
|.+||+.+.++..+..
T Consensus 607 l~~~~~~~~~~~~~~~ 622 (795)
T 4a2l_A 607 ISCFNPETEKFRNFTE 622 (795)
T ss_dssp EEEEETTTTEEEEECG
T ss_pred eEEEcCCCCcEEEcCC
Confidence 8899999988876654
No 56
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=95.64 E-value=0.44 Score=54.98 Aligned_cols=188 Identities=11% Similarity=0.006 Sum_probs=100.6
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCc
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R 180 (647)
-+++|++.+..+..+..........-++++.. ++.||| |.. ..-+++||+.++++..+.....+..
T Consensus 384 Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~-----------~~Gl~~~~~~~~~~~~~~~~~~~~~- 450 (781)
T 3v9f_A 384 GINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTY-----------LGNISYYNTRLKKFQIIELEKNELL- 450 (781)
T ss_dssp CEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EET-----------TEEEEEECSSSCEEEECCSTTTCCC-
T ss_pred cEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-Eec-----------cCCEEEEcCCCCcEEEeccCCCCCC-
Confidence 47889998877775532111111222333333 567777 321 1458899999999988764211211
Q ss_pred ceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCC
Q 006384 181 SGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEV 258 (647)
Q Consensus 181 ~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~ 258 (647)
.-.+++.- ++.|||-.. +-|++||+.+.+|..+........+.. .-.+++.. ++.|+| |.....
T Consensus 451 ~v~~i~~d~~g~lwigt~-----------~Gl~~~~~~~~~~~~~~~~~~~~~~~~-~i~~i~~d~~g~lWi-gt~~~G- 516 (781)
T 3v9f_A 451 DVRVFYEDKNKKIWIGTH-----------AGVFVIDLASKKVIHHYDTSNSQLLEN-FVRSIAQDSEGRFWI-GTFGGG- 516 (781)
T ss_dssp CEEEEEECTTSEEEEEET-----------TEEEEEESSSSSCCEEECTTTSSCSCS-CEEEEEECTTCCEEE-EESSSC-
T ss_pred eEEEEEECCCCCEEEEEC-----------CceEEEeCCCCeEEecccCcccccccc-eeEEEEEcCCCCEEE-EEcCCC-
Confidence 12222222 567777321 458999999999987764421111111 12223332 566665 333222
Q ss_pred CCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEE-ECCeEEEecceeccccCccccccccCCcE-EEE
Q 006384 259 STDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV-HKKRALLFGGVVDMEMKGDVIMSLFLNEL-YGF 336 (647)
Q Consensus 259 ~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~-~~~~iyifGG~~~~~~~~~~~~~~~~ndl-~~y 336 (647)
+++|++.+.+++........|.... .+++. .++.|+|-.. +-+ ++|
T Consensus 517 ---------------l~~~~~~~~~~~~~~~~~~l~~~~i-~~i~~d~~g~lWi~T~----------------~Glv~~~ 564 (781)
T 3v9f_A 517 ---------------VGIYTPDMQLVRKFNQYEGFCSNTI-NQIYRSSKGQMWLATG----------------EGLVCFP 564 (781)
T ss_dssp ---------------EEEECTTCCEEEEECTTTTCSCSCE-EEEEECTTSCEEEEET----------------TEEEEES
T ss_pred ---------------EEEEeCCCCeEEEccCCCCCCCCee-EEEEECCCCCEEEEEC----------------CCceEEE
Confidence 7899999999888754222232221 12222 1466666432 225 788
Q ss_pred ECCCCcEEEeEe
Q 006384 337 QLDNHRWYPLEL 348 (647)
Q Consensus 337 d~~t~~W~~l~~ 348 (647)
|+.+.++..+..
T Consensus 565 d~~~~~~~~~~~ 576 (781)
T 3v9f_A 565 SARNFDYQVFQR 576 (781)
T ss_dssp CTTTCCCEEECG
T ss_pred CCCCCcEEEccc
Confidence 888877766553
No 57
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=95.63 E-value=0.8 Score=44.33 Aligned_cols=194 Identities=9% Similarity=0.033 Sum_probs=99.8
Q ss_pred cceEEEEeccCCCEEEE-EcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCC
Q 006384 70 SNCSLNINPLKETELIL-YGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSP 147 (647)
Q Consensus 70 ~~~s~~~~~~~~~~lyv-~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~ 147 (647)
..+++++.+ ++.||+ .... .+.+++|++.+.....+.... ...-++++.. ++.|||... .
T Consensus 25 ~p~~i~~~~--~g~l~v~~~~~---------~~~i~~~~~~~~~~~~~~~~~---~~~p~~i~~~~~g~l~v~~~-~--- 86 (270)
T 1rwi_B 25 SPSGVAVDS--AGNVYVTSEGM---------YGRVVKLATGSTGTTVLPFNG---LYQPQGLAVDGAGTVYVTDF-N--- 86 (270)
T ss_dssp CEEEEEECT--TCCEEEEECSS---------SCEEEEECC-----EECCCCS---CCSCCCEEECTTCCEEEEET-T---
T ss_pred CccceEECC--CCCEEEEccCC---------CCcEEEecCCCcccceEeeCC---cCCcceeEECCCCCEEEEcC-C---
Confidence 445566665 567888 4331 246888888776655443221 1122334443 467888764 1
Q ss_pred CCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEecc
Q 006384 148 NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (647)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~ 226 (647)
..+++||+.+.....+...+ ...-+.+++. +++||+.... .+.+++|+..+........
T Consensus 87 --------~~i~~~d~~~~~~~~~~~~~---~~~p~~i~~~~~g~l~v~~~~---------~~~i~~~~~~~~~~~~~~~ 146 (270)
T 1rwi_B 87 --------NRVVTLAAGSNNQTVLPFDG---LNYPEGLAVDTQGAVYVADRG---------NNRVVKLAAGSKTQTVLPF 146 (270)
T ss_dssp --------TEEEEECTTCSCCEECCCCS---CSSEEEEEECTTCCEEEEEGG---------GTEEEEECTTCCSCEECCC
T ss_pred --------CEEEEEeCCCceEeeeecCC---cCCCcceEECCCCCEEEEECC---------CCEEEEEECCCceeEeecc
Confidence 46889998877655443211 1222334443 5678886542 2467888776655443321
Q ss_pred CCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE
Q 006384 227 RFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (647)
Q Consensus 227 ~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~ 305 (647)
. ....-.++++. ++.||+...... .+++|++....-...... ....-.++++-
T Consensus 147 ~------~~~~p~~i~~~~~g~l~v~~~~~~----------------~i~~~~~~~~~~~~~~~~----~~~~p~~i~~d 200 (270)
T 1rwi_B 147 T------GLNDPDGVAVDNSGNVYVTDTDNN----------------RVVKLEAESNNQVVLPFT----DITAPWGIAVD 200 (270)
T ss_dssp C------SCCSCCCEEECTTCCEEEEEGGGT----------------EEEEECTTTCCEEECCCS----SCCSEEEEEEC
T ss_pred c------cCCCceeEEEeCCCCEEEEECCCC----------------EEEEEecCCCceEeeccc----CCCCceEEEEC
Confidence 1 00111234444 567887764332 388899877654332211 11122334443
Q ss_pred -CCeEEEecceeccccCccccccccCCcEEEEECCCC
Q 006384 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (647)
Q Consensus 306 -~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (647)
++.||+.... .+.|++|++.+.
T Consensus 201 ~~g~l~v~~~~--------------~~~v~~~~~~~~ 223 (270)
T 1rwi_B 201 EAGTVYVTEHN--------------TNQVVKLLAGST 223 (270)
T ss_dssp TTCCEEEEETT--------------TSCEEEECTTCS
T ss_pred CCCCEEEEECC--------------CCcEEEEcCCCC
Confidence 4577776532 245888887654
No 58
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=95.55 E-value=1.3 Score=50.37 Aligned_cols=120 Identities=14% Similarity=0.164 Sum_probs=69.2
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCC--eEEEecCCCC---CCC---cceeEEEEECCEEEEEeCCcCCCCCccc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNS---PPP---RSAHQAVSWKNYLYIFGGEFTSPNQERF 152 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~--~W~~l~s~~~---P~~---R~~ha~v~~~~~iyv~GG~~~~~~~~~~ 152 (647)
++.||+... .+.|+.+|..+. .|+.-..... +.. ....+.++.++.||+...
T Consensus 77 ~g~vyv~~~----------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~---------- 136 (677)
T 1kb0_A 77 DGIMYVSAS----------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW---------- 136 (677)
T ss_dssp TTEEEEECG----------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT----------
T ss_pred CCEEEEECC----------CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC----------
Confidence 788888765 247899999876 4876433210 000 112234556888888642
Q ss_pred cccCcEEEEECCCCc--EEEccc-CCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc--eEEecc
Q 006384 153 HHYKDFWMLDLKTNQ--WEQLNL-KGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKP 226 (647)
Q Consensus 153 ~~~~dv~~yD~~t~~--W~~~~~-~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~ 226 (647)
-..++.+|..+++ |+.-.. ..........+.++.++.||+..+.... .....|+.||..+.+ |+.-..
T Consensus 137 --dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~----~~~g~v~a~D~~tG~~~W~~~~~ 209 (677)
T 1kb0_A 137 --DGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEY----GVRGYITAYDAETGERKWRWFSV 209 (677)
T ss_dssp --TSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTT----CCBCEEEEEETTTCCEEEEEESS
T ss_pred --CCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEeccccc----CCCCEEEEEECCCCcEEEEeccC
Confidence 1469999998874 776432 1001111222345568888875432111 124579999998765 876543
No 59
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=95.49 E-value=0.77 Score=46.50 Aligned_cols=206 Identities=10% Similarity=0.020 Sum_probs=98.6
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~ 149 (647)
.++.+.| ++.+++.|+. + ..+..||+.+.++....... ........+.+ ++.++++|+..
T Consensus 56 ~~~~~~~--~~~~l~~~~~--d-------g~i~vwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d----- 117 (372)
T 1k8k_C 56 TGVDWAP--DSNRIVTCGT--D-------RNAYVWTLKGRTWKPTLVIL--RINRAARCVRWAPNEKKFAVGSGS----- 117 (372)
T ss_dssp EEEEEET--TTTEEEEEET--T-------SCEEEEEEETTEEEEEEECC--CCSSCEEEEEECTTSSEEEEEETT-----
T ss_pred cEEEEeC--CCCEEEEEcC--C-------CeEEEEECCCCeeeeeEEee--cCCCceeEEEECCCCCEEEEEeCC-----
Confidence 3455555 5666667762 2 36888898888876543211 11112223333 45566666642
Q ss_pred ccccccCcEEEEECCCCc-EEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCC--------
Q 006384 150 ERFHHYKDFWMLDLKTNQ-WEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF-------- 219 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~-W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~-------- 219 (647)
..+.+||+.+.. |........+....-.+++.. ++.+++.|+.. ..+.+||+...
T Consensus 118 ------~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~i~~~d~~~~~~~~~~~~ 182 (372)
T 1k8k_C 118 ------RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD---------FKCRIFSAYIKEVEERPAP 182 (372)
T ss_dssp ------SSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT---------SCEEEEECCCTTTSCCCCC
T ss_pred ------CEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCC---------CCEEEEEcccccccccccc
Confidence 235555555443 332222111111112222222 55677777653 35778885421
Q ss_pred --------ceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecC
Q 006384 220 --------KWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI 290 (647)
Q Consensus 220 --------~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~ 290 (647)
.-..+.... .....-.+++.. ++.+++.|+.++. +.+||+.+.+-...-..
T Consensus 183 ~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~----------------i~i~d~~~~~~~~~~~~ 242 (372)
T 1k8k_C 183 TPWGSKMPFGELMFESS----SSCGWVHGVCFSANGSRVAWVSHDST----------------VCLADADKKMAVATLAS 242 (372)
T ss_dssp BTTBSCCCTTCEEEECC----CCSSCEEEEEECSSSSEEEEEETTTE----------------EEEEEGGGTTEEEEEEC
T ss_pred cccccccchhhheEecC----CCCCeEEEEEECCCCCEEEEEeCCCE----------------EEEEECCCCceeEEEcc
Confidence 111111110 011111222222 5556777765543 77888765543222111
Q ss_pred CCCCCCceeeEEEEE-CCeEEEecceeccccCccccccccCCcEEEEECCC--CcEEEeEec
Q 006384 291 GMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN--HRWYPLELR 349 (647)
Q Consensus 291 g~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t--~~W~~l~~~ 349 (647)
+.. .-.++++. ++.+++.| . + +.+.+|++.+ +.|..+...
T Consensus 243 ---~~~-~v~~~~~~~~~~~l~~~-~-d-------------~~i~i~~~~~~~~~~~~~~~~ 285 (372)
T 1k8k_C 243 ---ETL-PLLAVTFITESSLVAAG-H-D-------------CFPVLFTYDSAAGKLSFGGRL 285 (372)
T ss_dssp ---SSC-CEEEEEEEETTEEEEEE-T-T-------------SSCEEEEEETTTTEEEECCCC
T ss_pred ---CCC-CeEEEEEecCCCEEEEE-e-C-------------CeEEEEEccCcCceEEEeecc
Confidence 111 12233333 56655554 2 2 4578888887 899887653
No 60
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=95.47 E-value=0.56 Score=47.96 Aligned_cols=189 Identities=10% Similarity=0.121 Sum_probs=96.1
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCC
Q 006384 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPN 148 (647)
Q Consensus 71 ~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~ 148 (647)
-.++...| ++.+++.||. + ..+.+||..+..|....... .........+.+ ++.+++.|+..
T Consensus 19 v~~l~~sp--~g~~las~~~--D-------~~i~iw~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~g~~l~s~s~D---- 82 (345)
T 3fm0_A 19 CWFLAWNP--AGTLLASCGG--D-------RRIRIWGTEGDSWICKSVLS-EGHQRTVRKVAWSPCGNYLASASFD---- 82 (345)
T ss_dssp EEEEEECT--TSSCEEEEET--T-------SCEEEEEEETTEEEEEEEEC-SSCSSCEEEEEECTTSSEEEEEETT----
T ss_pred EEEEEECC--CCCEEEEEcC--C-------CeEEEEEcCCCcceeeeeec-cccCCcEEEEEECCCCCEEEEEECC----
Confidence 34566666 6778888883 2 35778888888776332110 011112223333 46677777643
Q ss_pred CccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCc-eEEec
Q 006384 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK-WQEIK 225 (647)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~-W~~v~ 225 (647)
..+.+||..+..+..+... ......-.++.+ ++.+++.|+.+ ..+.+||+.+.. +..+.
T Consensus 83 -------~~v~iw~~~~~~~~~~~~~--~~h~~~v~~v~~sp~~~~l~s~s~D---------~~v~iwd~~~~~~~~~~~ 144 (345)
T 3fm0_A 83 -------ATTCIWKKNQDDFECVTTL--EGHENEVKSVAWAPSGNLLATCSRD---------KSVWVWEVDEEDEYECVS 144 (345)
T ss_dssp -------SCEEEEEECCC-EEEEEEE--CCCSSCEEEEEECTTSSEEEEEETT---------SCEEEEEECTTSCEEEEE
T ss_pred -------CcEEEEEccCCCeEEEEEc--cCCCCCceEEEEeCCCCEEEEEECC---------CeEEEEECCCCCCeEEEE
Confidence 3466777777666544331 111111122333 56677777753 357788876543 33332
Q ss_pred cCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEE
Q 006384 226 PRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV 304 (647)
Q Consensus 226 ~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~ 304 (647)
... .....-.+++.. ++.+++.|+.++. +.+|+..+..|..+..... ....-.++++
T Consensus 145 ~~~----~h~~~v~~~~~~p~~~~l~s~s~d~~----------------i~~w~~~~~~~~~~~~~~~--h~~~v~~l~~ 202 (345)
T 3fm0_A 145 VLN----SHTQDVKHVVWHPSQELLASASYDDT----------------VKLYREEEDDWVCCATLEG--HESTVWSLAF 202 (345)
T ss_dssp EEC----CCCSCEEEEEECSSSSCEEEEETTSC----------------EEEEEEETTEEEEEEEECC--CSSCEEEEEE
T ss_pred Eec----CcCCCeEEEEECCCCCEEEEEeCCCc----------------EEEEEecCCCEEEEEEecC--CCCceEEEEE
Confidence 221 011111122222 5667778877655 6778887777765543210 1111122333
Q ss_pred E-CCeEEEecce
Q 006384 305 H-KKRALLFGGV 315 (647)
Q Consensus 305 ~-~~~iyifGG~ 315 (647)
. ++.+++.|+.
T Consensus 203 sp~g~~l~s~s~ 214 (345)
T 3fm0_A 203 DPSGQRLASCSD 214 (345)
T ss_dssp CTTSSEEEEEET
T ss_pred CCCCCEEEEEeC
Confidence 3 5667777764
No 61
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=95.45 E-value=0.65 Score=53.52 Aligned_cols=179 Identities=10% Similarity=0.019 Sum_probs=100.1
Q ss_pred cEEEEECCCCeEEEecCCC-CCCC-cceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccC-CCC
Q 006384 102 DLYRYDVEKQEWKVISSPN-SPPP-RSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK-GCP 177 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~-~P~~-R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~-~~P 177 (647)
-+++||+.+.+|..+.... .+.+ ..-.+++.. ++.|||-.- ..-+++||+.+.++..+... ++|
T Consensus 470 Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~------------~~Gl~~~~~~~~~~~~~~~~~~l~ 537 (781)
T 3v9f_A 470 GVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTF------------GGGVGIYTPDMQLVRKFNQYEGFC 537 (781)
T ss_dssp EEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEES------------SSCEEEECTTCCEEEEECTTTTCS
T ss_pred ceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEc------------CCCEEEEeCCCCeEEEccCCCCCC
Confidence 5889999998887665321 1111 112222222 467777431 13488999999998887542 223
Q ss_pred CCcceeEEEE-ECCEEEEEecccCCCCceeeeCcE-EEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecc
Q 006384 178 SPRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDL-YVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGY 254 (647)
Q Consensus 178 ~~R~~h~~~~-~~~~lyv~GG~~~~~~~~~~~~dv-~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~ 254 (647)
..... +++. -++.||+-.. +-+ ++||+.+.++....... .+|.... .+++.. ++.|++.+.
T Consensus 538 ~~~i~-~i~~d~~g~lWi~T~-----------~Glv~~~d~~~~~~~~~~~~~--gl~~~~i-~~i~~d~~g~lW~~t~- 601 (781)
T 3v9f_A 538 SNTIN-QIYRSSKGQMWLATG-----------EGLVCFPSARNFDYQVFQRKE--GLPNTHI-RAISEDKNGNIWASTN- 601 (781)
T ss_dssp CSCEE-EEEECTTSCEEEEET-----------TEEEEESCTTTCCCEEECGGG--TCSCCCC-CEEEECSSSCEEEECS-
T ss_pred CCeeE-EEEECCCCCEEEEEC-----------CCceEEECCCCCcEEEccccC--CCCCceE-EEEEECCCCCEEEEcC-
Confidence 22222 2222 2567777432 235 88999998888775431 1232222 334443 567776542
Q ss_pred cCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEE-ECCeEEEecceeccccCccccccccCCcE
Q 006384 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV-HKKRALLFGGVVDMEMKGDVIMSLFLNEL 333 (647)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~-~~~~iyifGG~~~~~~~~~~~~~~~~ndl 333 (647)
. -+.+|++.+.++.......-.|...+...+++ ..+-.+.|||..+ +
T Consensus 602 -~----------------Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~G---------------l 649 (781)
T 3v9f_A 602 -T----------------GISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGLIYFGSING---------------L 649 (781)
T ss_dssp -S----------------CEEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSCEEEEETTE---------------E
T ss_pred -C----------------ceEEEECCCCceEEecccCCccccccccCceEECCCCEEEEECCCc---------------e
Confidence 2 27899999999888754322344433333333 3344556676543 7
Q ss_pred EEEECCC
Q 006384 334 YGFQLDN 340 (647)
Q Consensus 334 ~~yd~~t 340 (647)
..|||..
T Consensus 650 ~~f~p~~ 656 (781)
T 3v9f_A 650 CFFNPDI 656 (781)
T ss_dssp EEECSCC
T ss_pred EEEChhh
Confidence 7787754
No 62
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=95.43 E-value=0.53 Score=49.09 Aligned_cols=180 Identities=14% Similarity=0.063 Sum_probs=88.8
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcc
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRS 181 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~ 181 (647)
.+..||+.+.+....-.. .......+.+++.+++.|+.. ..+.+||+.+..-......+ .. ..
T Consensus 157 ~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~-~~-~~ 219 (401)
T 4aez_A 157 LVDIYDVESQTKLRTMAG----HQARVGCLSWNRHVLSSGSRS-----------GAIHHHDVRIANHQIGTLQG-HS-SE 219 (401)
T ss_dssp CEEEEETTTCCEEEEECC----CSSCEEEEEEETTEEEEEETT-----------SEEEEEETTSSSCEEEEEEC-CS-SC
T ss_pred eEEEEECcCCeEEEEecC----CCCceEEEEECCCEEEEEcCC-----------CCEEEEecccCcceeeEEcC-CC-CC
Confidence 678888887654432221 112222334455666777642 46888898743321111111 11 11
Q ss_pred eeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe--CCEEEEEec--ccC
Q 006384 182 GHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGG--YSK 256 (647)
Q Consensus 182 ~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~GG--~~~ 256 (647)
-.+++.. ++.+++.|+.+ ..+.+||+.+..-...-.. ....-.+++.. +..+++.|| .++
T Consensus 220 v~~~~~~~~~~~l~s~~~d---------~~v~iwd~~~~~~~~~~~~------~~~~v~~~~~~p~~~~ll~~~~gs~d~ 284 (401)
T 4aez_A 220 VCGLAWRSDGLQLASGGND---------NVVQIWDARSSIPKFTKTN------HNAAVKAVAWCPWQSNLLATGGGTMDK 284 (401)
T ss_dssp EEEEEECTTSSEEEEEETT---------SCEEEEETTCSSEEEEECC------CSSCCCEEEECTTSTTEEEEECCTTTC
T ss_pred eeEEEEcCCCCEEEEEeCC---------CeEEEccCCCCCccEEecC------CcceEEEEEECCCCCCEEEEecCCCCC
Confidence 1122222 56677777753 4688999887543322111 11111233333 456777775 332
Q ss_pred CCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCe-EEEecceeccccCccccccccCCcEE
Q 006384 257 EVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKR-ALLFGGVVDMEMKGDVIMSLFLNELY 334 (647)
Q Consensus 257 ~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~-iyifGG~~~~~~~~~~~~~~~~ndl~ 334 (647)
.+.+||+.+..-...-.. ...-.+++.. ++. +++.+|.. -+.|.
T Consensus 285 ----------------~i~i~d~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~g~~-------------dg~i~ 330 (401)
T 4aez_A 285 ----------------QIHFWNAATGARVNTVDA-----GSQVTSLIWSPHSKEIMSTHGFP-------------DNNLS 330 (401)
T ss_dssp ----------------EEEEEETTTCCEEEEEEC-----SSCEEEEEECSSSSEEEEEECTT-------------TCEEE
T ss_pred ----------------EEEEEECCCCCEEEEEeC-----CCcEEEEEECCCCCeEEEEeecC-------------CCcEE
Confidence 388889876654333221 1112223332 344 44443432 24689
Q ss_pred EEECCCCcEEEeE
Q 006384 335 GFQLDNHRWYPLE 347 (647)
Q Consensus 335 ~yd~~t~~W~~l~ 347 (647)
+||+.+.....+.
T Consensus 331 v~~~~~~~~~~~~ 343 (401)
T 4aez_A 331 IWSYSSSGLTKQV 343 (401)
T ss_dssp EEEEETTEEEEEE
T ss_pred EEecCCccceeEE
Confidence 9998887665543
No 63
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=95.42 E-value=0.59 Score=48.08 Aligned_cols=197 Identities=11% Similarity=0.019 Sum_probs=102.3
Q ss_pred ceEEEEeccCCC-EEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEEC--CEEEEEeCCcCCC
Q 006384 71 NCSLNINPLKET-ELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK--NYLYIFGGEFTSP 147 (647)
Q Consensus 71 ~~s~~~~~~~~~-~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~--~~iyv~GG~~~~~ 147 (647)
-.++...| ++ .+++.|+. + ..+.+||+.+.......... .....-.+++... +.+++.|+..
T Consensus 76 v~~~~~~~--~~~~~l~s~~~--d-------g~i~iwd~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d--- 140 (383)
T 3ei3_B 76 VTSLEWHP--THPTTVAVGSK--G-------GDIILWDYDVQNKTSFIQGM-GPGDAITGMKFNQFNTNQLFVSSIR--- 140 (383)
T ss_dssp EEEEEECS--SCTTEEEEEEB--T-------SCEEEEETTSTTCEEEECCC-STTCBEEEEEEETTEEEEEEEEETT---
T ss_pred EEEEEECC--CCCCEEEEEcC--C-------CeEEEEeCCCcccceeeecC-CcCCceeEEEeCCCCCCEEEEEeCC---
Confidence 34455555 44 67777773 2 36889999887766543211 1112222333333 3666666542
Q ss_pred CCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEecc
Q 006384 148 NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (647)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~ 226 (647)
..+.+||+.+.....+...... ...-.+++.. ++.+++.|+.. ..+.+||+....-..+..
T Consensus 141 --------~~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~ 202 (383)
T 3ei3_B 141 --------GATTLRDFSGSVIQVFAKTDSW-DYWYCCVDVSVSRQMLATGDST---------GRLLLLGLDGHEIFKEKL 202 (383)
T ss_dssp --------TEEEEEETTSCEEEEEECCCCS-SCCEEEEEEETTTTEEEEEETT---------SEEEEEETTSCEEEEEEC
T ss_pred --------CEEEEEECCCCceEEEeccCCC-CCCeEEEEECCCCCEEEEECCC---------CCEEEEECCCCEEEEecc
Confidence 4588899987766655441111 1111222222 55666777643 468888885443333322
Q ss_pred CCCCCCCCCceeeeEEEe-CCE-EEEEecccCCCCCcccCCCCCceeeeEEEEeCCC----CeEEEeecCCCCCCCceee
Q 006384 227 RFGSMWPSPRSGFQFFVY-QDE-VFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT----WEWSKVKKIGMPPGPRAGF 300 (647)
Q Consensus 227 ~~~~~~P~~R~~~s~~~~-~~~-Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t----~~W~~v~~~g~~P~~R~~~ 300 (647)
. ...-.+++.. ++. +++.|+.++. +.+||+.+ ........ ....-.
T Consensus 203 h-------~~~v~~~~~~~~~~~~l~s~~~d~~----------------i~iwd~~~~~~~~~~~~~~~-----~~~~v~ 254 (383)
T 3ei3_B 203 H-------KAKVTHAEFNPRCDWLMATSSVDAT----------------VKLWDLRNIKDKNSYIAEMP-----HEKPVN 254 (383)
T ss_dssp S-------SSCEEEEEECSSCTTEEEEEETTSE----------------EEEEEGGGCCSTTCEEEEEE-----CSSCEE
T ss_pred C-------CCcEEEEEECCCCCCEEEEEeCCCE----------------EEEEeCCCCCcccceEEEec-----CCCceE
Confidence 1 1112223333 344 7778876654 77888765 33322211 111122
Q ss_pred EEEEE--CCeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 301 SMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 301 s~~~~--~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
++++. ++.+++.|+.. +.|.+||+.+..
T Consensus 255 ~~~~s~~~~~~l~~~~~d--------------~~i~iwd~~~~~ 284 (383)
T 3ei3_B 255 AAYFNPTDSTKLLTTDQR--------------NEIRVYSSYDWS 284 (383)
T ss_dssp EEEECTTTSCEEEEEESS--------------SEEEEEETTBTT
T ss_pred EEEEcCCCCCEEEEEcCC--------------CcEEEEECCCCc
Confidence 23332 45677777642 458999987653
No 64
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=95.40 E-value=2.7 Score=42.71 Aligned_cols=174 Identities=14% Similarity=0.105 Sum_probs=89.1
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~ 160 (647)
.+.+|++|- . .-+++-.-...+|+.+.....+......++...++.+|+.|-. ..+++
T Consensus 46 ~~~~~~~G~---~-------g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~------------g~i~~ 103 (327)
T 2xbg_A 46 RHHGWLVGV---N-------ATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEP------------PIMLH 103 (327)
T ss_dssp SSCEEEEET---T-------TEEEEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEET------------TEEEE
T ss_pred CCcEEEEcC---C-------CeEEEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECC------------CeEEE
Confidence 467888653 1 1344443334689988643211122334444457788887521 23444
Q ss_pred EECCCCcEEEcccCCCCCCcceeEEEE-ECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceee
Q 006384 161 LDLKTNQWEQLNLKGCPSPRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGF 239 (647)
Q Consensus 161 yD~~t~~W~~~~~~~~P~~R~~h~~~~-~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~ 239 (647)
-.=.-.+|+.+.... +.+-..+.++. -++.+|+.|.. ..+++-.=.-..|+.+... .+...+
T Consensus 104 S~DgG~tW~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~----------g~v~~S~DgG~tW~~~~~~------~~~~~~ 166 (327)
T 2xbg_A 104 TTDGGQSWSQIPLDP-KLPGSPRLIKALGNGSAEMITNV----------GAIYRTKDSGKNWQALVQE------AIGVMR 166 (327)
T ss_dssp ESSTTSSCEECCCCT-TCSSCEEEEEEEETTEEEEEETT----------CCEEEESSTTSSEEEEECS------CCCCEE
T ss_pred ECCCCCCceECcccc-CCCCCeEEEEEECCCCEEEEeCC----------ccEEEEcCCCCCCEEeecC------CCcceE
Confidence 222246899987521 11222233333 46788887742 1233332234679998653 122334
Q ss_pred eEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEE-eCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEecc
Q 006384 240 QFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSL-DPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGG 314 (647)
Q Consensus 240 s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~y-d~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG 314 (647)
.++.. ++.+|++|- .+. +++- |....+|+.+.. +.+...+.+++. ++.+|+++.
T Consensus 167 ~~~~~~~~~~~~~g~-~G~----------------~~~S~d~gG~tW~~~~~----~~~~~~~~~~~~~~g~~~~~~~ 223 (327)
T 2xbg_A 167 NLNRSPSGEYVAVSS-RGS----------------FYSTWEPGQTAWEPHNR----TTSRRLHNMGFTPDGRLWMIVN 223 (327)
T ss_dssp EEEECTTSCEEEEET-TSS----------------EEEEECTTCSSCEEEEC----CSSSCEEEEEECTTSCEEEEET
T ss_pred EEEEcCCCcEEEEEC-CCc----------------EEEEeCCCCCceeECCC----CCCCccceeEECCCCCEEEEeC
Confidence 44444 556666552 222 4443 333678999853 233444455543 567777653
No 65
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=95.39 E-value=0.032 Score=57.60 Aligned_cols=146 Identities=12% Similarity=0.166 Sum_probs=69.1
Q ss_pred EEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCcc
Q 006384 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQER 151 (647)
Q Consensus 74 ~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~ 151 (647)
+.+.| ++.+++.|+. + +.+.+||+.+..|..+.... ........+.+ ++.+++.|+..
T Consensus 17 ~~~s~--~g~~l~~~~~--d-------~~i~iw~~~~~~~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~s~d------- 76 (377)
T 3dwl_C 17 HAFNS--QRTEFVTTTA--T-------NQVELYEQDGNGWKHARTFS--DHDKIVTCVDWAPKSNRIVTCSQD------- 76 (377)
T ss_dssp CEECS--SSSEEECCCS--S-------SCBCEEEEETTEEEECCCBC--CCSSCEEEEEECTTTCCEEEEETT-------
T ss_pred EEECC--CCCEEEEecC--C-------CEEEEEEccCCceEEEEEEe--cCCceEEEEEEeCCCCEEEEEeCC-------
Confidence 34445 5677777773 2 35778888888887765432 11222233333 45677777643
Q ss_pred ccccCcEEEEECCCCc-EEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCc-eEEeccC
Q 006384 152 FHHYKDFWMLDLKTNQ-WEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK-WQEIKPR 227 (647)
Q Consensus 152 ~~~~~dv~~yD~~t~~-W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~-W~~v~~~ 227 (647)
..+.+||+.+.. |..... .........++.+ ++.+++.|+.. ..+.+||+.+.. |..+...
T Consensus 77 ----~~v~vwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~ 141 (377)
T 3dwl_C 77 ----RNAYVYEKRPDGTWKQTLV--LLRLNRAATFVRWSPNEDKFAVGSGA---------RVISVCYFEQENDWWVSKHL 141 (377)
T ss_dssp ----SSEEEC------CCCCEEE--CCCCSSCEEEEECCTTSSCCEEEESS---------SCEEECCC-----CCCCEEE
T ss_pred ----CeEEEEEcCCCCceeeeeE--ecccCCceEEEEECCCCCEEEEEecC---------CeEEEEEECCcccceeeeEe
Confidence 357888887766 433322 1111111222333 45666777653 357778877654 3322222
Q ss_pred CCCCCCCCceeeeEEEe-CCEEEEEecccCC
Q 006384 228 FGSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (647)
Q Consensus 228 ~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~ 257 (647)
.. +....-.+++.. ++.+++.|+.++.
T Consensus 142 ~~---~h~~~v~~~~~~~~~~~l~~~~~d~~ 169 (377)
T 3dwl_C 142 KR---PLRSTILSLDWHPNNVLLAAGCADRK 169 (377)
T ss_dssp CS---SCCSCEEEEEECTTSSEEEEEESSSC
T ss_pred ec---ccCCCeEEEEEcCCCCEEEEEeCCCE
Confidence 10 112222233333 5667788877654
No 66
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=95.35 E-value=0.81 Score=47.11 Aligned_cols=132 Identities=5% Similarity=-0.054 Sum_probs=67.3
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (647)
..+.+||+.+..-...-. ... ..-.+++.. ++.+++.|+.. ..+.+||+.+.+....-.. .
T Consensus 227 g~i~~~d~~~~~~~~~~~--~~~-~~i~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~------~ 288 (425)
T 1r5m_A 227 GAIFVYQITEKTPTGKLI--GHH-GPISVLEFNDTNKLLLSASDD---------GTLRIWHGGNGNSQNCFYG------H 288 (425)
T ss_dssp GCEEEEETTCSSCSEEEC--CCS-SCEEEEEEETTTTEEEEEETT---------SCEEEECSSSBSCSEEECC------C
T ss_pred CeEEEEEcCCCceeeeec--cCC-CceEEEEECCCCCEEEEEcCC---------CEEEEEECCCCccceEecC------C
Confidence 468899988764221111 111 111223332 55566666642 3588888877543322211 1
Q ss_pred CceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEe
Q 006384 235 PRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLF 312 (647)
Q Consensus 235 ~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyif 312 (647)
...-.+++.. ++ +++.|+.++. +.+||+.+..-...... ....-.++++. ++.++++
T Consensus 289 ~~~i~~~~~~~~~-~l~~~~~d~~----------------i~i~d~~~~~~~~~~~~----~~~~i~~~~~s~~~~~l~~ 347 (425)
T 1r5m_A 289 SQSIVSASWVGDD-KVISCSMDGS----------------VRLWSLKQNTLLALSIV----DGVPIFAGRISQDGQKYAV 347 (425)
T ss_dssp SSCEEEEEEETTT-EEEEEETTSE----------------EEEEETTTTEEEEEEEC----TTCCEEEEEECTTSSEEEE
T ss_pred CccEEEEEECCCC-EEEEEeCCCc----------------EEEEECCCCcEeEeccc----CCccEEEEEEcCCCCEEEE
Confidence 1122333444 44 7777776544 88899877654433221 11112233333 5667777
Q ss_pred cceeccccCccccccccCCcEEEEECCC
Q 006384 313 GGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (647)
Q Consensus 313 GG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (647)
|+.. ..|.+||+.+
T Consensus 348 ~~~d--------------g~i~i~~~~~ 361 (425)
T 1r5m_A 348 AFMD--------------GQVNVYDLKK 361 (425)
T ss_dssp EETT--------------SCEEEEECHH
T ss_pred EECC--------------CeEEEEECCC
Confidence 7642 3588888764
No 67
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=95.20 E-value=2.3 Score=44.77 Aligned_cols=154 Identities=11% Similarity=0.056 Sum_probs=77.0
Q ss_pred ECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEE
Q 006384 133 WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLY 212 (647)
Q Consensus 133 ~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~ 212 (647)
+++..++.|+.. ..+.+||+.+..-...-. .......++.+++.+++.|+.+ ..+.
T Consensus 287 ~~~~~l~~~~~d-----------~~i~i~d~~~~~~~~~~~----~~~~~v~~~~~~~~~l~~~~~d---------g~i~ 342 (445)
T 2ovr_B 287 FDGIHVVSGSLD-----------TSIRVWDVETGNCIHTLT----GHQSLTSGMELKDNILVSGNAD---------STVK 342 (445)
T ss_dssp ECSSEEEEEETT-----------SCEEEEETTTCCEEEEEC----CCCSCEEEEEEETTEEEEEETT---------SCEE
T ss_pred ECCCEEEEEeCC-----------CeEEEEECCCCCEEEEEc----CCcccEEEEEEeCCEEEEEeCC---------CeEE
Confidence 355555666542 457888988765432211 1111222333445566666642 4688
Q ss_pred EEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEee-cCC
Q 006384 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK-KIG 291 (647)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~-~~g 291 (647)
+||+.+.+-...-..+ ......-..+.+++.+++.|+.++. +.+||+.+.+....- ...
T Consensus 343 vwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~l~s~~~dg~----------------v~iwd~~~~~~~~~~~~~~ 402 (445)
T 2ovr_B 343 IWDIKTGQCLQTLQGP----NKHQSAVTCLQFNKNFVITSSDDGT----------------VKLWDLKTGEFIRNLVTLE 402 (445)
T ss_dssp EEETTTCCEEEEECST----TSCSSCEEEEEECSSEEEEEETTSE----------------EEEEETTTCCEEEEEEECT
T ss_pred EEECCCCcEEEEEccC----CCCCCCEEEEEECCCEEEEEeCCCe----------------EEEEECCCCceeeeeeccc
Confidence 8998776543222110 0011112233346677788877654 788998877654432 110
Q ss_pred CCCCCceeeEEEEE-CCeEEEecceeccccCccccccccCCcEEEEECCC
Q 006384 292 MPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (647)
Q Consensus 292 ~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (647)
..+..-.-.++++. ++.++++|+.++ .....|++||...
T Consensus 403 ~~~~~~~v~~~~~s~~~~~la~~~~dg----------~~~~~l~v~df~~ 442 (445)
T 2ovr_B 403 SGGSGGVVWRIRASNTKLVCAVGSRNG----------TEETKLLVLDFDV 442 (445)
T ss_dssp TGGGTCEEEEEEECSSEEEEEEECSSS----------SSCCEEEEEECCC
T ss_pred cCCCCceEEEEEecCCEEEEEEcccCC----------CCccEEEEEECCC
Confidence 00111112233333 455666666543 1234588888764
No 68
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=95.19 E-value=1.9 Score=49.74 Aligned_cols=141 Identities=14% Similarity=0.193 Sum_probs=79.6
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcc-eeEEEEE-CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCC
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRS-AHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~-~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~ 179 (647)
-+++||+.+.++..+..... .+.. -.+++.. ++.|||... +.+++||..++++..+.. +.+..
T Consensus 108 Gl~~yd~~~~~f~~~~~~~~-~~~~~i~~i~~d~~g~lwi~t~-------------~gl~~~~~~~~~~~~~~~-~~~~~ 172 (795)
T 4a2l_A 108 GLSRYDEEKDIFQNFFYEKN-GKHLQVNGIEEISPEQLLISTP-------------EGLIMFDIKESKFIDDSF-STAMH 172 (795)
T ss_dssp CEEEEETTTTEEEEECCEET-TEECCCCEEEEEETTEEEEEET-------------TEEEEEETTTTEEECSSS-CHHHH
T ss_pred chheeCCCCCeEEecccccc-CCCceEEEEEECCCCCEEEEEC-------------CceEEEECCCCEEEeccC-CCCCC
Confidence 47999999998887653211 1111 2223333 678887542 358899999888776543 11111
Q ss_pred cceeEEEE-ECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCC
Q 006384 180 RSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (647)
Q Consensus 180 R~~h~~~~-~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~ 257 (647)
..-.+++. -++.|||. .. ...+++||+.+.++..+... +....-.+++.. ++.|+|.. ...
T Consensus 173 ~~i~~i~~d~~g~lwig-t~---------~~Gl~~~~~~~~~~~~~~~~-----~~~~~i~~i~~d~~g~lwigt-~~~- 235 (795)
T 4a2l_A 173 KTIASTLYRQGDQIYIG-TS---------TDGLYTYSITQKTFEKVIPI-----LGTKQIQAILQQSPTRIWVAT-EGA- 235 (795)
T ss_dssp TCCEEEEEEETTEEEEE-ES---------SSCEEEEETTTCCEEECC---------CCCEEEEEEEETTEEEEEE-BSS-
T ss_pred cceEEEEECCCCCEEEE-EC---------CCCEEEEeCCCCeEEEecCC-----CCCCeeEEEEEcCCCCEEEEE-CCC-
Confidence 10112222 37888883 21 13588999999988876432 111112223222 66777632 222
Q ss_pred CCCcccCCCCCceeeeEEEEeCCCCeEEEeec
Q 006384 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (647)
Q Consensus 258 ~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~ 289 (647)
-+++||+.+.++.....
T Consensus 236 ---------------Gl~~~~~~~~~~~~~~~ 252 (795)
T 4a2l_A 236 ---------------GLFLINPKTKEIKNYLH 252 (795)
T ss_dssp ---------------CEEEEETTTTEEEEECC
T ss_pred ---------------CeEEEeCCCCeEEEeec
Confidence 28899999988887754
No 69
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=95.17 E-value=1.2 Score=49.59 Aligned_cols=120 Identities=11% Similarity=0.099 Sum_probs=67.5
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEEC-CCC--eEEEecCCCC---CCC---cceeEEEEECCEEEEEeCCcCCCCCcc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDV-EKQ--EWKVISSPNS---PPP---RSAHQAVSWKNYLYIFGGEFTSPNQER 151 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~-~~~--~W~~l~s~~~---P~~---R~~ha~v~~~~~iyv~GG~~~~~~~~~ 151 (647)
++.||+.... .+.|+++|. .+. .|+.-..... +.+ ....+.++.++.||+...
T Consensus 62 ~g~vyv~~~~---------~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--------- 123 (571)
T 2ad6_A 62 GDMMYVHSAF---------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA--------- 123 (571)
T ss_dssp TTEEEEECST---------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT---------
T ss_pred CCEEEEEeCC---------CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC---------
Confidence 7889987651 247999998 665 5886432210 000 011234566888888743
Q ss_pred ccccCcEEEEECCCC--cEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc--eEEec
Q 006384 152 FHHYKDFWMLDLKTN--QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIK 225 (647)
Q Consensus 152 ~~~~~dv~~yD~~t~--~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~ 225 (647)
-..++.+|..++ .|+.-............+.++.++.||+-.+.... ..-..|+.||+.+.+ |+.-.
T Consensus 124 ---dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~----~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 124 ---NGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAEL----GVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp ---TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGG----TCCCEEEEEETTTCCEEEEEES
T ss_pred ---CCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCcc----CCCCEEEEEECCCCcEEEEEcc
Confidence 146899999887 48754221000001122334568888875432110 013578999998754 87543
No 70
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=95.14 E-value=1.7 Score=43.21 Aligned_cols=118 Identities=8% Similarity=0.052 Sum_probs=55.8
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECC--CCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCC
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVE--KQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPN 148 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~--~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~ 148 (647)
.+++.|. +..||+.+.. . +.+.+|++. +.+++.+.....+. .-..++.. +..||+.+..
T Consensus 42 ~~~~spd-g~~l~~~~~~---~------~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~----- 104 (343)
T 1ri6_A 42 PMVVSPD-KRYLYVGVRP---E------FRVLAYRIAPDDGALTFAAESALPG--SLTHISTDHQGQFVFVGSYN----- 104 (343)
T ss_dssp CEEECTT-SSEEEEEETT---T------TEEEEEEECTTTCCEEEEEEEECSS--CCSEEEECTTSSEEEEEETT-----
T ss_pred eEEECCC-CCEEEEeecC---C------CeEEEEEecCCCCceeeccccccCC--CCcEEEEcCCCCEEEEEecC-----
Confidence 3555552 3445555441 1 356676766 77777554321111 12222322 3456666532
Q ss_pred CccccccCcEEEEECCCC-cEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCC-CceEEe
Q 006384 149 QERFHHYKDFWMLDLKTN-QWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ-FKWQEI 224 (647)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~-~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t-~~W~~v 224 (647)
-..+.+||+... ....+.. .+....-+.+++. +..||+.+.. -+.+.+||+.+ .+...+
T Consensus 105 ------~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~s~dg~~l~~~~~~---------~~~v~~~d~~~~~~~~~~ 167 (343)
T 1ri6_A 105 ------AGNVSVTRLEDGLPVGVVDV--VEGLDGCHSANISPDNRTLWVPALK---------QDRICLFTVSDDGHLVAQ 167 (343)
T ss_dssp ------TTEEEEEEEETTEEEEEEEE--ECCCTTBCCCEECTTSSEEEEEEGG---------GTEEEEEEECTTSCEEEE
T ss_pred ------CCeEEEEECCCCcccccccc--ccCCCCceEEEECCCCCEEEEecCC---------CCEEEEEEecCCCceeee
Confidence 135777777322 2222222 1111122233333 3467665532 24688999887 666543
No 71
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=95.13 E-value=2.1 Score=42.86 Aligned_cols=206 Identities=6% Similarity=-0.032 Sum_probs=98.4
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~ 149 (647)
.++++.| ++.+++.|+. + ..+.+||+.+.+-...-.. .......+.+ ++.+++.|+..
T Consensus 36 ~~~~~s~--~~~~l~~~~~--d-------g~i~vwd~~~~~~~~~~~~----h~~~v~~~~~~~~~~~l~s~~~d----- 95 (369)
T 3zwl_B 36 TQVKYNK--EGDLLFSCSK--D-------SSASVWYSLNGERLGTLDG----HTGTIWSIDVDCFTKYCVTGSAD----- 95 (369)
T ss_dssp EEEEECT--TSCEEEEEES--S-------SCEEEEETTTCCEEEEECC----CSSCEEEEEECTTSSEEEEEETT-----
T ss_pred EEEEEcC--CCCEEEEEeC--C-------CEEEEEeCCCchhhhhhhh----cCCcEEEEEEcCCCCEEEEEeCC-----
Confidence 3445555 5667777762 2 3688899887654432211 1112222333 45566666642
Q ss_pred ccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCc----eEEe
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK----WQEI 224 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~----W~~v 224 (647)
..+.+||+.+......-. .+ ..-.+++.. ++.+++.++..... ....+.+||+.+.. +...
T Consensus 96 ------g~i~iwd~~~~~~~~~~~--~~--~~v~~~~~~~~~~~l~~~~~~~~~----~~g~i~~~d~~~~~~~~~~~~~ 161 (369)
T 3zwl_B 96 ------YSIKLWDVSNGQCVATWK--SP--VPVKRVEFSPCGNYFLAILDNVMK----NPGSINIYEIERDSATHELTKV 161 (369)
T ss_dssp ------TEEEEEETTTCCEEEEEE--CS--SCEEEEEECTTSSEEEEEECCBTT----BCCEEEEEEEEECTTTCCEEEE
T ss_pred ------CeEEEEECCCCcEEEEee--cC--CCeEEEEEccCCCEEEEecCCccC----CCCEEEEEEecCCccceeeccc
Confidence 468899998876544332 11 111222222 45555555532111 12457777765432 2211
Q ss_pred ccCCCCCC--CCCc-eeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCC-CeEEEeecCCCCCCCcee
Q 006384 225 KPRFGSMW--PSPR-SGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT-WEWSKVKKIGMPPGPRAG 299 (647)
Q Consensus 225 ~~~~~~~~--P~~R-~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t-~~W~~v~~~g~~P~~R~~ 299 (647)
...+.... .... ...+++.. ++.+++.|+.++. +.+||+.+ ..-...-.. ....-
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~----------------i~i~d~~~~~~~~~~~~~----~~~~v 221 (369)
T 3zwl_B 162 SEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGK----------------ISKYDVSNNYEYVDSIDL----HEKSI 221 (369)
T ss_dssp CSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSE----------------EEEEETTTTTEEEEEEEC----CSSCE
T ss_pred ccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCE----------------EEEEECCCCcEeEEEEec----CCCce
Confidence 11100000 0000 11122222 5566777766544 88899876 333222211 11112
Q ss_pred eEEEEE-CCeEEEecceeccccCccccccccCCcEEEEECCCCcEEE
Q 006384 300 FSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (647)
Q Consensus 300 ~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (647)
.++++. ++.+++.|+.. ..|.+||+.+.....
T Consensus 222 ~~~~~~~~~~~l~~~~~d--------------~~i~v~d~~~~~~~~ 254 (369)
T 3zwl_B 222 SDMQFSPDLTYFITSSRD--------------TNSFLVDVSTLQVLK 254 (369)
T ss_dssp EEEEECTTSSEEEEEETT--------------SEEEEEETTTCCEEE
T ss_pred eEEEECCCCCEEEEecCC--------------ceEEEEECCCCceee
Confidence 233333 56666766532 458999988765443
No 72
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=95.12 E-value=1.1 Score=50.48 Aligned_cols=193 Identities=8% Similarity=0.002 Sum_probs=99.1
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCC-cEEEcccCCCC
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN-QWEQLNLKGCP 177 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~-~W~~~~~~~~P 177 (647)
..+++||+.+.+-..+.... ........+.+ +++.++++...... ....++++|+.+. .+..+.....+
T Consensus 235 ~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~~~~~~~------~~~~v~~~d~~~g~~~~~~~~~~~~ 306 (706)
T 2z3z_A 235 VTVGIYHLATGKTVYLQTGE--PKEKFLTNLSWSPDENILYVAEVNRAQ------NECKVNAYDAETGRFVRTLFVETDK 306 (706)
T ss_dssp EEEEEEETTTTEEEECCCCS--CTTCEEEEEEECTTSSEEEEEEECTTS------CEEEEEEEETTTCCEEEEEEEEECS
T ss_pred eEEEEEECCCCceEeeccCC--CCceeEeeEEEECCCCEEEEEEeCCCC------CeeEEEEEECCCCceeeEEEEccCC
Confidence 57999999998876664321 11122233333 44433443322211 1357999999998 66665431111
Q ss_pred CCc--ceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe--CCEEEEE
Q 006384 178 SPR--SGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLY 251 (647)
Q Consensus 178 ~~R--~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~ 251 (647)
... .......- ++++++.+...+ ...+|.++........+... ...... .++.. +..||+.
T Consensus 307 ~~~~~~~~~~~sp~~dg~~l~~~~~~g-------~~~l~~~~~~~~~~~~l~~~-----~~~v~~-~~~~spdg~~l~~~ 373 (706)
T 2z3z_A 307 HYVEPLHPLTFLPGSNNQFIWQSRRDG-------WNHLYLYDTTGRLIRQVTKG-----EWEVTN-FAGFDPKGTRLYFE 373 (706)
T ss_dssp SCCCCCSCCEECTTCSSEEEEEECTTS-------SCEEEEEETTSCEEEECCCS-----SSCEEE-EEEECTTSSEEEEE
T ss_pred CeECccCCceeecCCCCEEEEEEccCC-------ccEEEEEECCCCEEEecCCC-----CeEEEe-eeEEcCCCCEEEEE
Confidence 100 11112222 667665554322 35688888776666665432 111211 11222 4456665
Q ss_pred ecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEecceeccccCccccccccC
Q 006384 252 GGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFL 330 (647)
Q Consensus 252 GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ 330 (647)
+.... .....+|.+|+.+.....+.. .. ..+++++- +++.+++..... ...
T Consensus 374 ~~~~~------------~~~~~l~~~d~~~~~~~~l~~-----~~-~~~~~~~spdg~~l~~~~~~~----------~~p 425 (706)
T 2z3z_A 374 STEAS------------PLERHFYCIDIKGGKTKDLTP-----ES-GMHRTQLSPDGSAIIDIFQSP----------TVP 425 (706)
T ss_dssp ESSSC------------TTCBEEEEEETTCCCCEESCC-----SS-SEEEEEECTTSSEEEEEEECS----------SCS
T ss_pred ecCCC------------CceEEEEEEEcCCCCceeccC-----CC-ceEEEEECCCCCEEEEEecCC----------CCC
Confidence 54322 122458999988776555532 11 12333333 566666654322 123
Q ss_pred CcEEEEECCCCc
Q 006384 331 NELYGFQLDNHR 342 (647)
Q Consensus 331 ndl~~yd~~t~~ 342 (647)
..++++|+.+.+
T Consensus 426 ~~i~l~d~~~~~ 437 (706)
T 2z3z_A 426 RKVTVTNIGKGS 437 (706)
T ss_dssp CEEEEEESSSCE
T ss_pred cEEEEEECCCCe
Confidence 569999998876
No 73
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=95.08 E-value=1.1 Score=46.60 Aligned_cols=209 Identities=13% Similarity=0.152 Sum_probs=101.2
Q ss_pred EEEEeccCCC-EEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCC
Q 006384 73 SLNINPLKET-ELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 73 s~~~~~~~~~-~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~ 149 (647)
++...| ++ .+++.|+. + +.+.+||+.+.+....-... .... ....+.+ ++.+++.|+..
T Consensus 136 ~~~~~p--~~~~~l~s~~~--d-------g~i~iwd~~~~~~~~~~~~~-~~~~-~v~~~~~~~~~~~l~~~~~d----- 197 (402)
T 2aq5_A 136 IVAWHP--TAQNVLLSAGC--D-------NVILVWDVGTGAAVLTLGPD-VHPD-TIYSVDWSRDGALICTSCRD----- 197 (402)
T ss_dssp EEEECS--SBTTEEEEEET--T-------SCEEEEETTTTEEEEEECTT-TCCS-CEEEEEECTTSSCEEEEETT-----
T ss_pred EEEECc--CCCCEEEEEcC--C-------CEEEEEECCCCCccEEEecC-CCCC-ceEEEEECCCCCEEEEEecC-----
Confidence 344554 33 46666662 2 36889999988765332100 0111 2222333 46666676642
Q ss_pred ccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCce-EEeccCC
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW-QEIKPRF 228 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W-~~v~~~~ 228 (647)
..+.+||+.+..-...-..+....+....+..-++.+++.|.. .. .-..+.+||+.+..- ......
T Consensus 198 ------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-~~-----~d~~i~iwd~~~~~~~~~~~~~- 264 (402)
T 2aq5_A 198 ------KRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS-RM-----SERQVALWDTKHLEEPLSLQEL- 264 (402)
T ss_dssp ------SEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC-TT-----CCEEEEEEETTBCSSCSEEEEC-
T ss_pred ------CcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEecc-CC-----CCceEEEEcCccccCCceEEec-
Confidence 4688999988764433211111122222222236677776621 10 125688899876442 111111
Q ss_pred CCCCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCe--EEEeecCCCCCCCceeeEEEE
Q 006384 229 GSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE--WSKVKKIGMPPGPRAGFSMCV 304 (647)
Q Consensus 229 ~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~--W~~v~~~g~~P~~R~~~s~~~ 304 (647)
.....-.+++.. +..||+.|+.++. +.+|++.+.. ...+.... ....-.++++
T Consensus 265 ----~~~~~v~~~~~s~~~~~l~~~g~~dg~----------------i~i~d~~~~~~~~~~l~~~~---~~~~v~~~~~ 321 (402)
T 2aq5_A 265 ----DTSSGVLLPFFDPDTNIVYLCGKGDSS----------------IRYFEITSEAPFLHYLSMFS---SKESQRGMGY 321 (402)
T ss_dssp ----CCCSSCEEEEEETTTTEEEEEETTCSC----------------EEEEEECSSTTCEEEEEEEC---CSSCCSEEEE
T ss_pred ----cCCCceeEEEEcCCCCEEEEEEcCCCe----------------EEEEEecCCCcceEeecccc---cCCcccceEE
Confidence 111112223333 4566667765544 6777776554 33443221 1111123344
Q ss_pred ECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEecC
Q 006384 305 HKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRK 350 (647)
Q Consensus 305 ~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~ 350 (647)
..+..+++.+. ..+.+|++.++....+....
T Consensus 322 sp~~~~~~s~~---------------~~~~~~~l~~~~~~~i~~~~ 352 (402)
T 2aq5_A 322 MPKRGLEVNKC---------------EIARFYKLHERKCEPIAMTV 352 (402)
T ss_dssp CCGGGSCGGGT---------------EEEEEEEEETTEEEEEEEEC
T ss_pred ecccccceecc---------------eeEEEEEcCCCcEEEEEEEc
Confidence 43333333321 24778888888777766544
No 74
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=95.05 E-value=2.4 Score=43.39 Aligned_cols=194 Identities=9% Similarity=-0.034 Sum_probs=96.4
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCc
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~ 150 (647)
.++.+.| ++.++++|+. + ..+..||........+... ...-.+++.. ++..++.|+..
T Consensus 112 ~~~~~s~--~~~~l~~~~~--d-------g~i~i~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d------ 170 (425)
T 1r5m_A 112 TCLAWSH--DGNSIVTGVE--N-------GELRLWNKTGALLNVLNFH----RAPIVSVKWNKDGTHIISMDVE------ 170 (425)
T ss_dssp EEEEECT--TSSEEEEEET--T-------SCEEEEETTSCEEEEECCC----CSCEEEEEECTTSSEEEEEETT------
T ss_pred EEEEEcC--CCCEEEEEeC--C-------CeEEEEeCCCCeeeeccCC----CccEEEEEECCCCCEEEEEecC------
Confidence 3444555 5667777772 2 3577888555544444321 1112222222 45555566532
Q ss_pred cccccCcEEEEECCCCcEEEcccCCCCCCc--------------ceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEc
Q 006384 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPR--------------SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDL 216 (647)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R--------------~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~ 216 (647)
..+.+||+.+......-. .+... ...+++...+..+++|+.. ..+.+||+
T Consensus 171 -----~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------g~i~~~d~ 234 (425)
T 1r5m_A 171 -----NVTILWNVISGTVMQHFE--LKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK---------GAIFVYQI 234 (425)
T ss_dssp -----CCEEEEETTTTEEEEEEC--CC---------------CCCBSCCEEEETTEEEEECGG---------GCEEEEET
T ss_pred -----CeEEEEECCCCcEEEEee--ccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCC---------CeEEEEEc
Confidence 457888988776443322 11111 0222333334446666643 46889998
Q ss_pred CCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCC
Q 006384 217 DQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPG 295 (647)
Q Consensus 217 ~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~ 295 (647)
.+.+-...-.. ....-.+++.. ++.+++.|+.++. +.+||+.+......-. ..
T Consensus 235 ~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~~----------------i~i~d~~~~~~~~~~~----~~ 288 (425)
T 1r5m_A 235 TEKTPTGKLIG------HHGPISVLEFNDTNKLLLSASDDGT----------------LRIWHGGNGNSQNCFY----GH 288 (425)
T ss_dssp TCSSCSEEECC------CSSCEEEEEEETTTTEEEEEETTSC----------------EEEECSSSBSCSEEEC----CC
T ss_pred CCCceeeeecc------CCCceEEEEECCCCCEEEEEcCCCE----------------EEEEECCCCccceEec----CC
Confidence 87643222111 11112233333 5567777776554 7788876543222211 11
Q ss_pred CceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 296 PRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 296 ~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
...-.++++..+.+++.|+.. ..|.+||+.+.+
T Consensus 289 ~~~i~~~~~~~~~~l~~~~~d--------------~~i~i~d~~~~~ 321 (425)
T 1r5m_A 289 SQSIVSASWVGDDKVISCSMD--------------GSVRLWSLKQNT 321 (425)
T ss_dssp SSCEEEEEEETTTEEEEEETT--------------SEEEEEETTTTE
T ss_pred CccEEEEEECCCCEEEEEeCC--------------CcEEEEECCCCc
Confidence 122234444433366666532 458899987754
No 75
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=95.03 E-value=2 Score=45.11 Aligned_cols=182 Identities=12% Similarity=0.108 Sum_probs=97.4
Q ss_pred CEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEE
Q 006384 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWML 161 (647)
Q Consensus 82 ~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~y 161 (647)
+.+++.|+. + +.+..||+.+.+-...-.. ....-.++.+.+.+++.|+.. ..+.+|
T Consensus 129 g~~l~sg~~--d-------g~i~vwd~~~~~~~~~~~~----h~~~v~~~~~~~~~l~s~~~d-----------g~i~vw 184 (445)
T 2ovr_B 129 GNRIVSGSD--D-------NTLKVWSAVTGKCLRTLVG----HTGGVWSSQMRDNIIISGSTD-----------RTLKVW 184 (445)
T ss_dssp TTEEEEEET--T-------SCEEEEETTTCCEEEECCC----CSSCEEEEEEETTEEEEEETT-----------SCEEEE
T ss_pred CCEEEEEEC--C-------CcEEEEECCCCcEEEEEcC----CCCCEEEEEecCCEEEEEeCC-----------CeEEEE
Confidence 456666662 2 3688899887754432221 111222333345566666643 458889
Q ss_pred ECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeE
Q 006384 162 DLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQF 241 (647)
Q Consensus 162 D~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~ 241 (647)
|+.++.-...-. .....-.++.+++..++.|+.+ ..+.+||+.+.+-...-.. ......+
T Consensus 185 d~~~~~~~~~~~----~h~~~v~~~~~~~~~l~s~s~d---------g~i~~wd~~~~~~~~~~~~-------~~~~v~~ 244 (445)
T 2ovr_B 185 NAETGECIHTLY----GHTSTVRCMHLHEKRVVSGSRD---------ATLRVWDIETGQCLHVLMG-------HVAAVRC 244 (445)
T ss_dssp ETTTTEEEEEEC----CCSSCEEEEEEETTEEEEEETT---------SEEEEEESSSCCEEEEEEC-------CSSCEEE
T ss_pred ECCcCcEEEEEC----CCCCcEEEEEecCCEEEEEeCC---------CEEEEEECCCCcEEEEEcC-------CcccEEE
Confidence 998875432211 1111222333445556666643 4688899887654332211 1111122
Q ss_pred EEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccC
Q 006384 242 FVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMK 321 (647)
Q Consensus 242 ~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~ 321 (647)
+.+++.+++.|+.++. +.+||+.+..-...-. .......++..++..++.|+..
T Consensus 245 ~~~~~~~l~~~~~dg~----------------i~iwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~l~~~~~d----- 298 (445)
T 2ovr_B 245 VQYDGRRVVSGAYDFM----------------VKVWDPETETCLHTLQ-----GHTNRVYSLQFDGIHVVSGSLD----- 298 (445)
T ss_dssp EEECSSCEEEEETTSC----------------EEEEEGGGTEEEEEEC-----CCSSCEEEEEECSSEEEEEETT-----
T ss_pred EEECCCEEEEEcCCCE----------------EEEEECCCCcEeEEec-----CCCCceEEEEECCCEEEEEeCC-----
Confidence 3337777888887655 7788877654332211 1111223333477777777653
Q ss_pred ccccccccCCcEEEEECCCCc
Q 006384 322 GDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 322 ~~~~~~~~~ndl~~yd~~t~~ 342 (647)
+.|.+||+.+.+
T Consensus 299 ---------~~i~i~d~~~~~ 310 (445)
T 2ovr_B 299 ---------TSIRVWDVETGN 310 (445)
T ss_dssp ---------SCEEEEETTTCC
T ss_pred ---------CeEEEEECCCCC
Confidence 458999988765
No 76
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=94.96 E-value=1.1 Score=50.06 Aligned_cols=226 Identities=13% Similarity=-0.012 Sum_probs=116.4
Q ss_pred eEEEEeccCCCEEEEEcCeecCC-CcceeeCcEEEEECCC------CeEEEec-CCCCCCCcceeEEEEE--CCEEEEEe
Q 006384 72 CSLNINPLKETELILYGGEFYNG-NKTYVYGDLYRYDVEK------QEWKVIS-SPNSPPPRSAHQAVSW--KNYLYIFG 141 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g-~~~~~~ndl~~yd~~~------~~W~~l~-s~~~P~~R~~ha~v~~--~~~iyv~G 141 (647)
.+++..| +++.+++....... ........+|++|+.+ ...+.+. .. .. ....+.+ +++.+++.
T Consensus 133 ~~~~~sp--Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~----~~-~~~~~~~SpDG~~la~~ 205 (662)
T 3azo_A 133 ADPVLLP--ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDA----HR-FVTGPRLSPDGRQAVWL 205 (662)
T ss_dssp EEEEEET--TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSC----SS-EECCCEECTTSSEEEEE
T ss_pred cCcEECC--CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecC----CC-cccCceECCCCCEEEEE
Confidence 3445555 55555555432100 0012346899999988 6666665 32 11 1112223 44444443
Q ss_pred CCcCCCCCccccccCcEEEEECC-CC---cEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEc
Q 006384 142 GEFTSPNQERFHHYKDFWMLDLK-TN---QWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDL 216 (647)
Q Consensus 142 G~~~~~~~~~~~~~~dv~~yD~~-t~---~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~ 216 (647)
........ .....+|++|+. ++ ....+... . .......+.. +++||+.+...+ ...+|.+|+
T Consensus 206 ~~~~~~~~---~~~~~i~~~d~~~~g~~~~~~~l~~~--~-~~~~~~~~~spdg~l~~~~~~~~-------~~~l~~~~~ 272 (662)
T 3azo_A 206 AWDHPRMP---WEGTELKTARVTEDGRFADTRTLLGG--P-EEAIAQAEWAPDGSLIVATDRTG-------WWNLHRVDP 272 (662)
T ss_dssp EECTTCCT---TTCEEEEEEEECTTSCEEEEEEEEEE--T-TBCEEEEEECTTSCEEEEECTTS-------SCEEEEECT
T ss_pred ECCCCCCC---CCCcEEEEEEECCCCcccccEEeCCC--C-CceEcceEECCCCeEEEEECCCC-------CeEEEEEEC
Confidence 32221110 012579999998 56 44444321 1 1111222222 667776665432 246999999
Q ss_pred CCCceEEeccCCCCC-CCCCce-eeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCC
Q 006384 217 DQFKWQEIKPRFGSM-WPSPRS-GFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMP 293 (647)
Q Consensus 217 ~t~~W~~v~~~~~~~-~P~~R~-~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~ 293 (647)
.+.++..+....... .|.-.. ...++.. ++.+++.+.. .. ..+|.+|+.+.....+..
T Consensus 273 ~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~--------------~~l~~~d~~~~~~~~l~~---- 333 (662)
T 3azo_A 273 ATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA--------------AVLGILDPESGELVDAAG---- 333 (662)
T ss_dssp TTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS--------------CEEEEEETTTTEEEECCS----
T ss_pred CCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Cc--------------cEEEEEECCCCcEEEecC----
Confidence 888898876542110 011110 1233443 6677766654 32 358899998887766642
Q ss_pred CCCceeeEE-EEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 294 PGPRAGFSM-CVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 294 P~~R~~~s~-~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
+. ....++ ..-++.+++..+... ....||.+|+.+.+...+..
T Consensus 334 ~~-~~~~~~~s~~~~~~~~~~~~~~-----------~~~~i~~~d~~~g~~~~l~~ 377 (662)
T 3azo_A 334 PW-TEWAATLTVSGTRAVGVAASPR-----------TAYEVVELDTVTGRARTIGA 377 (662)
T ss_dssp SC-CEEEEEEEEETTEEEEEEEETT-----------EEEEEEEEETTTCCEEEEES
T ss_pred CC-CeEEEEEecCCCEEEEEEcCCC-----------CCCEEEEEECCCCceEEeec
Confidence 11 112233 344666666554321 23569999999988887754
No 77
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=94.93 E-value=3.3 Score=41.17 Aligned_cols=68 Identities=18% Similarity=0.166 Sum_probs=40.7
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDF 158 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv 158 (647)
++.+|+.++. .+.++++|+.+.+....... +.....+.++.. +..+|+.+.. ...+
T Consensus 10 ~~~~~v~~~~---------~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~~~v~~~~-----------~~~i 67 (349)
T 1jmx_B 10 GHEYMIVTNY---------PNNLHVVDVASDTVYKSCVM--PDKFGPGTAMMAPDNRTAYVLNNH-----------YGDI 67 (349)
T ss_dssp TCEEEEEEET---------TTEEEEEETTTTEEEEEEEC--SSCCSSCEEEECTTSSEEEEEETT-----------TTEE
T ss_pred CCEEEEEeCC---------CCeEEEEECCCCcEEEEEec--CCCCCCceeEECCCCCEEEEEeCC-----------CCcE
Confidence 5788888762 24789999998876533221 110012233333 3467877642 2569
Q ss_pred EEEECCCCcEEE
Q 006384 159 WMLDLKTNQWEQ 170 (647)
Q Consensus 159 ~~yD~~t~~W~~ 170 (647)
++||+.+.+...
T Consensus 68 ~~~d~~t~~~~~ 79 (349)
T 1jmx_B 68 YGIDLDTCKNTF 79 (349)
T ss_dssp EEEETTTTEEEE
T ss_pred EEEeCCCCcEEE
Confidence 999999886543
No 78
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=94.89 E-value=1.3 Score=48.77 Aligned_cols=149 Identities=14% Similarity=0.128 Sum_probs=75.0
Q ss_pred CcEEEEECCCCcEEEc-ccCCC--------CCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEec
Q 006384 156 KDFWMLDLKTNQWEQL-NLKGC--------PSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~-~~~~~--------P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (647)
+.+.+||..+.+-... ...++ |.+|..+..+.. +..+|+-... .+.++++|..+.+-..+.
T Consensus 248 ~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~---------~g~i~vvd~~~~~~l~~~ 318 (543)
T 1nir_A 248 PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE---------TGKVLLVNYKDIDNLTVT 318 (543)
T ss_dssp SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT---------TTEEEEEECTTSSSCEEE
T ss_pred CeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC---------CCeEEEEEecCCCcceeE
Confidence 5678889887764332 22111 222333222222 3455554321 357889998765432222
Q ss_pred cCCCCCCCCCceeeeEEEe-CCE-EEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEE
Q 006384 226 PRFGSMWPSPRSGFQFFVY-QDE-VFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMC 303 (647)
Q Consensus 226 ~~~~~~~P~~R~~~s~~~~-~~~-Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~ 303 (647)
.. +..+.-+.++.. +++ +|+.+..+ +.+.++|+.+.+-...-..+..|.+..+...
T Consensus 319 ~i-----~~~~~~~~~~~spdg~~l~va~~~~----------------~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~- 376 (543)
T 1nir_A 319 SI-----GAAPFLHDGGWDSSHRYFMTAANNS----------------NKVAVIDSKDRRLSALVDVGKTPHPGRGANF- 376 (543)
T ss_dssp EE-----ECCSSCCCEEECTTSCEEEEEEGGG----------------TEEEEEETTTTEEEEEEECSSSBCCTTCEEE-
T ss_pred Ee-----ccCcCccCceECCCCCEEEEEecCC----------------CeEEEEECCCCeEEEeeccCCCCCCCCCccc-
Confidence 22 122222334444 344 54443322 2477899998876654443444544333332
Q ss_pred EE--CCeEEEecceeccccCccccccccCCcEEEEECCCC-----cEEEeEe
Q 006384 304 VH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH-----RWYPLEL 348 (647)
Q Consensus 304 ~~--~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~-----~W~~l~~ 348 (647)
+. ++.+|+.+... -+.|-++|+.+. .|+.+..
T Consensus 377 ~~p~~g~~~~s~~~~-------------d~~V~v~d~~~~~~~~~~~~~v~~ 415 (543)
T 1nir_A 377 VHPKYGPVWSTSHLG-------------DGSISLIGTDPKNHPQYAWKKVAE 415 (543)
T ss_dssp EETTTEEEEEEEBSS-------------SSEEEEEECCTTTCTTTBTSEEEE
T ss_pred CCCCCccEEEeccCC-------------CceEEEEEeCCCCCchhcCeEEEE
Confidence 23 36677765432 245888888762 2665554
No 79
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=94.87 E-value=0.14 Score=54.42 Aligned_cols=115 Identities=10% Similarity=0.127 Sum_probs=61.3
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE---CCEEEEEeCCcCCCC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFTSPN 148 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~---~~~iyv~GG~~~~~~ 148 (647)
.+++..|. ++.+++.|+. + ..|.+||+.+..-..+.... .....-..+.+ ++.+++.|+..
T Consensus 123 ~~l~~~P~-~~~~lasGs~--d-------g~i~lWd~~~~~~~~~~~~~--gH~~~V~~l~f~p~~~~~l~s~s~D---- 186 (435)
T 4e54_B 123 TSLAWHPT-HPSTVAVGSK--G-------GDIMLWNFGIKDKPTFIKGI--GAGGSITGLKFNPLNTNQFYASSME---- 186 (435)
T ss_dssp EEEEECSS-CTTCEEEEET--T-------SCEEEECSSCCSCCEEECCC--SSSCCCCEEEECSSCTTEEEEECSS----
T ss_pred EEEEEeCC-CCCEEEEEeC--C-------CEEEEEECCCCCceeEEEcc--CCCCCEEEEEEeCCCCCEEEEEeCC----
Confidence 35566664 3567888873 3 36788888766543322211 11111222333 45567777653
Q ss_pred CccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCC
Q 006384 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (647)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (647)
..|.+||+.++....+.... .......++... ++.+++.|+.. ..|.+||+...
T Consensus 187 -------~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~g~~d---------g~i~~wd~~~~ 241 (435)
T 4e54_B 187 -------GTTRLQDFKGNILRVFASSD-TINIWFCSLDVSASSRMVVTGDNV---------GNVILLNMDGK 241 (435)
T ss_dssp -------SCEEEEETTSCEEEEEECCS-SCSCCCCCEEEETTTTEEEEECSS---------SBEEEEESSSC
T ss_pred -------CEEEEeeccCCceeEEeccC-CCCccEEEEEECCCCCEEEEEeCC---------CcEeeeccCcc
Confidence 34778899887665554311 111111222222 56777777753 45788887654
No 80
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=94.86 E-value=0.96 Score=48.76 Aligned_cols=59 Identities=19% Similarity=0.400 Sum_probs=40.8
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~ 160 (647)
++++|+|-| +..|+||..+++.....-+..| . --++....+++|+|-| +..|+
T Consensus 158 ~~~~yfFkG-----------~~yw~yd~~~~~~~~~~w~gi~--~-iDAA~~~~g~~YfFkG-------------~~y~r 210 (460)
T 1qhu_A 158 DEGILFFQG-----------NRKWFWDLTTGTKKERSWPAVG--N-CTSALRWLGRYYCFQG-------------NQFLR 210 (460)
T ss_dssp SSEEEEEET-----------TEEEEEETTTTEEEEECCTTSC--C-CSEEEEETTEEEEEET-------------TEEEE
T ss_pred CCeEEEEec-----------ccEEEEecccceeecccCCCCC--c-cchheeeCCceEEEEC-------------CEEEE
Confidence 577888888 3679999998876543322222 2 3455556899999988 46788
Q ss_pred EECCCC
Q 006384 161 LDLKTN 166 (647)
Q Consensus 161 yD~~t~ 166 (647)
||..+.
T Consensus 211 fd~~~~ 216 (460)
T 1qhu_A 211 FNPVSG 216 (460)
T ss_dssp ECTTTC
T ss_pred EcCccC
Confidence 887654
No 81
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=94.86 E-value=1 Score=43.50 Aligned_cols=188 Identities=8% Similarity=0.028 Sum_probs=98.4
Q ss_pred eCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEEEEECCC-CcEEEcccCCCC
Q 006384 100 YGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT-NQWEQLNLKGCP 177 (647)
Q Consensus 100 ~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t-~~W~~~~~~~~P 177 (647)
-..+++||+.+.+...+... ...-.+++.. ++..+++++. ..+++||+.+ .....+.... .
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~----~~~v~~~~~spdg~~l~~~~~------------~~i~~~d~~~~~~~~~~~~~~-~ 83 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQT----PELFEAPNWSPDGKYLLLNSE------------GLLYRLSLAGDPSPEKVDTGF-A 83 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEE----SSCCEEEEECTTSSEEEEEET------------TEEEEEESSSCCSCEECCCTT-C
T ss_pred ceeEEEEeCCCCceeeeccC----CcceEeeEECCCCCEEEEEcC------------CeEEEEeCCCCCCceEecccc-c
Confidence 35799999999887765432 1112222222 4555555531 4699999998 7776654311 1
Q ss_pred CCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CC-EEEEEeccc
Q 006384 178 SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QD-EVFLYGGYS 255 (647)
Q Consensus 178 ~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~-~Iyv~GG~~ 255 (647)
..........-+++.+++++.... ....+|.+++.+.....+... . . ...++.. ++ .|++.++..
T Consensus 84 ~~~~~~~~~spdg~~l~~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~-----~-~--~~~~~~spdg~~l~~~~~~~ 150 (297)
T 2ojh_A 84 TICNNDHGISPDGALYAISDKVEF-----GKSAIYLLPSTGGTPRLMTKN-----L-P--SYWHGWSPDGKSFTYCGIRD 150 (297)
T ss_dssp CCBCSCCEECTTSSEEEEEECTTT-----SSCEEEEEETTCCCCEECCSS-----S-S--EEEEEECTTSSEEEEEEEET
T ss_pred cccccceEECCCCCEEEEEEeCCC-----CcceEEEEECCCCceEEeecC-----C-C--ccceEECCCCCEEEEEECCC
Confidence 112222222235566666553221 146789999888776555433 1 1 2223333 34 455445433
Q ss_pred CCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEecceeccccCccccccccCCcEE
Q 006384 256 KEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELY 334 (647)
Q Consensus 256 ~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~ 334 (647)
.. ..+|.+++.+.....+... ...-..++.. ++..+++++..+ -...||
T Consensus 151 ~~--------------~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~~~~-----------~~~~i~ 200 (297)
T 2ojh_A 151 QV--------------FDIYSMDIDSGVETRLTHG-----EGRNDGPDYSPDGRWIYFNSSRT-----------GQMQIW 200 (297)
T ss_dssp TE--------------EEEEEEETTTCCEEECCCS-----SSCEEEEEECTTSSEEEEEECTT-----------SSCEEE
T ss_pred Cc--------------eEEEEEECCCCcceEcccC-----CCccccceECCCCCEEEEEecCC-----------CCccEE
Confidence 21 3588888877766555331 1111223332 555555544211 135688
Q ss_pred EEECCCCcEEEeE
Q 006384 335 GFQLDNHRWYPLE 347 (647)
Q Consensus 335 ~yd~~t~~W~~l~ 347 (647)
.+++.......+.
T Consensus 201 ~~~~~~~~~~~~~ 213 (297)
T 2ojh_A 201 RVRVDGSSVERIT 213 (297)
T ss_dssp EEETTSSCEEECC
T ss_pred EECCCCCCcEEEe
Confidence 8887776655543
No 82
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=94.83 E-value=0.62 Score=47.23 Aligned_cols=61 Identities=11% Similarity=-0.026 Sum_probs=34.8
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEccc
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNL 173 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~ 173 (647)
.+|.+|..+.++..+.... ....-..++.. +++||+.+.... -..+++|++.+..+..+..
T Consensus 19 ~v~~~d~~tg~~~~~~~~~--~~~~p~~~a~spdg~l~~~~~~~~---------~~~v~~~~~~~g~~~~~~~ 80 (347)
T 3hfq_A 19 YQGTLDTTAKTLTNDGLLA--ATQNPTYLALSAKDCLYSVDKEDD---------EGGIAAWQIDGQTAHKLNT 80 (347)
T ss_dssp EEEEEETTTTEEEEEEEEE--ECSCCCCEEECTTCEEEEEEEETT---------EEEEEEEEEETTEEEEEEE
T ss_pred EEEEEcCCCCeEEEeeeee--ccCCcceEEEccCCeEEEEEecCC---------CceEEEEEecCCcEEEeee
Confidence 4788888888887643211 01111112222 567777653211 2568999998888766654
No 83
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=94.82 E-value=1 Score=45.21 Aligned_cols=129 Identities=12% Similarity=0.018 Sum_probs=70.4
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCc
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~ 150 (647)
.++++.+ ++.||+.+.. .+.|++||+.+.++..+... ....-++++.. ++.||+.......
T Consensus 48 ~~~~~~~--~g~l~~~~~~---------~~~i~~~d~~~~~~~~~~~~---~~~~~~~i~~~~dg~l~v~~~~~~~---- 109 (333)
T 2dg1_A 48 EGLNFDR--QGQLFLLDVF---------EGNIFKINPETKEIKRPFVS---HKANPAAIKIHKDGRLFVCYLGDFK---- 109 (333)
T ss_dssp EEEEECT--TSCEEEEETT---------TCEEEEECTTTCCEEEEEEC---SSSSEEEEEECTTSCEEEEECTTSS----
T ss_pred cCcEECC--CCCEEEEECC---------CCEEEEEeCCCCcEEEEeeC---CCCCcceEEECCCCcEEEEeCCCCC----
Confidence 4455555 5778887652 13689999999888765421 11223333333 5678887542211
Q ss_pred cccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEec
Q 006384 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (647)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (647)
....+++||+.+.....+... ......-..+++. ++++|+....... ......|++||+.+.+...+.
T Consensus 110 ---~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~---~~~~~~l~~~~~~~~~~~~~~ 178 (333)
T 2dg1_A 110 ---STGGIFAATENGDNLQDIIED-LSTAYCIDDMVFDSKGGFYFTDFRGYS---TNPLGGVYYVSPDFRTVTPII 178 (333)
T ss_dssp ---SCCEEEEECTTSCSCEEEECS-SSSCCCEEEEEECTTSCEEEEECCCBT---TBCCEEEEEECTTSCCEEEEE
T ss_pred ---CCceEEEEeCCCCEEEEEEcc-CccCCcccceEECCCCCEEEEeccccc---cCCCceEEEEeCCCCEEEEee
Confidence 124699999988876533221 1111122222222 6678875432100 011356899998877766553
No 84
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=94.80 E-value=1.7 Score=45.95 Aligned_cols=66 Identities=11% Similarity=-0.019 Sum_probs=37.7
Q ss_pred CEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEE
Q 006384 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVF 214 (647)
Q Consensus 135 ~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~y 214 (647)
+.+++.|+.. ..+.+||+.+......-..+ ......+.+.. ++.+++.|+.+ ..|.+|
T Consensus 210 ~~~l~s~~~d-----------~~i~vwd~~~~~~~~~~~~~-h~~~v~~~~~s-d~~~l~s~~~d---------~~v~vw 267 (450)
T 2vdu_B 210 HQFIITSDRD-----------EHIKISHYPQCFIVDKWLFG-HKHFVSSICCG-KDYLLLSAGGD---------DKIFAW 267 (450)
T ss_dssp CEEEEEEETT-----------SCEEEEEESCTTCEEEECCC-CSSCEEEEEEC-STTEEEEEESS---------SEEEEE
T ss_pred CcEEEEEcCC-----------CcEEEEECCCCceeeeeecC-CCCceEEEEEC-CCCEEEEEeCC---------CeEEEE
Confidence 6777877743 35788888776543321111 11222222222 67777777742 468889
Q ss_pred EcCCCceE
Q 006384 215 DLDQFKWQ 222 (647)
Q Consensus 215 D~~t~~W~ 222 (647)
|+.+.+..
T Consensus 268 d~~~~~~~ 275 (450)
T 2vdu_B 268 DWKTGKNL 275 (450)
T ss_dssp ETTTCCEE
T ss_pred ECCCCcEe
Confidence 98887643
No 85
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=94.76 E-value=4 Score=41.23 Aligned_cols=136 Identities=12% Similarity=0.021 Sum_probs=71.0
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (647)
..+.+||+.+......-. ...... .+++.. ++.+++.|+.+ ..+.+||+.+..-...-.. .
T Consensus 164 ~~i~~wd~~~~~~~~~~~--~h~~~v-~~~~~~~~~~~l~sg~~d---------~~v~~wd~~~~~~~~~~~~------h 225 (340)
T 1got_B 164 TTCALWDIETGQQTTTFT--GHTGDV-MSLSLAPDTRLFVSGACD---------ASAKLWDVREGMCRQTFTG------H 225 (340)
T ss_dssp SCEEEEETTTTEEEEEEC--CCSSCE-EEEEECTTSSEEEEEETT---------SCEEEEETTTCSEEEEECC------C
T ss_pred CcEEEEECCCCcEEEEEc--CCCCce-EEEEECCCCCEEEEEeCC---------CcEEEEECCCCeeEEEEcC------C
Confidence 457889998876433211 111111 122222 56677777753 4578889877653322111 1
Q ss_pred CceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEE-EEE-CCeEEE
Q 006384 235 PRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSM-CVH-KKRALL 311 (647)
Q Consensus 235 ~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~-~~~-~~~iyi 311 (647)
...-.+++.. ++.+++.|+.++. +.+||+.+..-...-.. +....+..+ ++. ++.+++
T Consensus 226 ~~~v~~v~~~p~~~~l~s~s~d~~----------------v~iwd~~~~~~~~~~~~---~~~~~~v~~~~~s~~g~~l~ 286 (340)
T 1got_B 226 ESDINAICFFPNGNAFATGSDDAT----------------CRLFDLRADQELMTYSH---DNIICGITSVSFSKSGRLLL 286 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSC----------------EEEEETTTTEEEEEECC---TTCCSCEEEEEECTTSSEEE
T ss_pred cCCEEEEEEcCCCCEEEEEcCCCc----------------EEEEECCCCcEEEEEcc---CCcccceEEEEECCCCCEEE
Confidence 1112223333 6677888887665 77888877653322111 111122233 333 567777
Q ss_pred ecceeccccCccccccccCCcEEEEECCCCc
Q 006384 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 312 fGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
.|+.. ..|.+||+.+..
T Consensus 287 ~g~~d--------------~~i~vwd~~~~~ 303 (340)
T 1got_B 287 AGYDD--------------FNCNVWDALKAD 303 (340)
T ss_dssp EEETT--------------SEEEEEETTTCC
T ss_pred EECCC--------------CeEEEEEcccCc
Confidence 77642 458899986643
No 86
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=94.74 E-value=0.38 Score=55.28 Aligned_cols=106 Identities=9% Similarity=0.165 Sum_probs=61.8
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--C--CEEEEEeCCcCCCCCccccccC
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--K--NYLYIFGGEFTSPNQERFHHYK 156 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~--~~iyv~GG~~~~~~~~~~~~~~ 156 (647)
++.+++.||. + ..+.+||+...++..+.... ........+.+ . +.+++.|+.. .
T Consensus 20 dg~~latg~~--d-------g~I~vwd~~~~~~~~~~~l~--~h~~~V~~l~~s~~~~~~~l~s~s~D-----------g 77 (753)
T 3jro_A 20 YGKRLATCSS--D-------KTIKIFEVEGETHKLIDTLT--GHEGPVWRVDWAHPKFGTILASCSYD-----------G 77 (753)
T ss_dssp SSCCEEEEET--T-------TEEEEEEEETTEEEEEEEEC--CCSSCEEEEEECCTTSCSEEEEEETT-----------S
T ss_pred CCCeEEEEEC--C-------CcEEEEecCCCCCccceecc--CCcCceEEEEecCCCCCCEEEEEeCC-----------C
Confidence 4667777772 2 36788888877777654322 11222233333 2 5677777753 3
Q ss_pred cEEEEECCCCcEEEcccCCCCCCcceeEEEEE--C--CEEEEEecccCCCCceeeeCcEEEEEcCCC
Q 006384 157 DFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--K--HKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (647)
Q Consensus 157 dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~--~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (647)
.|.+||+.++.|..+... ......-.++.+ + +.+++.|+.+ ..+.+||+.+.
T Consensus 78 ~I~vwd~~~~~~~~~~~~--~~h~~~V~~v~~sp~~~~~~l~sgs~d---------g~I~vwdl~~~ 133 (753)
T 3jro_A 78 KVLIWKEENGRWSQIAVH--AVHSASVNSVQWAPHEYGPLLLVASSD---------GKVSVVEFKEN 133 (753)
T ss_dssp CEEEEEEETTEEEEEEEE--CCCSSCEEEEEECCGGGCSEEEEEETT---------SEEEEEECCSS
T ss_pred eEEEEECCCCcccccccc--cCCCCCeEEEEECCCCCCCEEEEEeCC---------CcEEEEEeecC
Confidence 588889888887766552 222222223333 3 6677777753 36788888765
No 87
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=94.67 E-value=4.1 Score=46.03 Aligned_cols=118 Identities=15% Similarity=0.163 Sum_probs=67.6
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCC--eEEEecCCCCCC---C---cceeEEEEECCEEEEEeCCcCCCCCccc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNSPP---P---RSAHQAVSWKNYLYIFGGEFTSPNQERF 152 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~--~W~~l~s~~~P~---~---R~~ha~v~~~~~iyv~GG~~~~~~~~~~ 152 (647)
++.||+... .+.|+.+|..+. .|+.-....... . ....+.++.++.||+...
T Consensus 66 ~g~vyv~~~----------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---------- 125 (668)
T 1kv9_A 66 DGVIYTSMS----------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL---------- 125 (668)
T ss_dssp TTEEEEEEG----------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT----------
T ss_pred CCEEEEECC----------CCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC----------
Confidence 788888765 246899998876 588543211000 0 011234556888887542
Q ss_pred cccCcEEEEECCCCc--EEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc--eEEe
Q 006384 153 HHYKDFWMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEI 224 (647)
Q Consensus 153 ~~~~dv~~yD~~t~~--W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v 224 (647)
-..++.||..+++ |+.-............+.++.++.||+..+.... .....|+.||+.+.+ |+.-
T Consensus 126 --dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~----~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 126 --DGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEY----GVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp --TSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTT----CCBCEEEEEETTTCCEEEEEE
T ss_pred --CCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCc----CCCCEEEEEECCCCcEEEEec
Confidence 1468999998874 8764421111112222345678888874332111 123579999998765 8764
No 88
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=94.66 E-value=0.98 Score=45.73 Aligned_cols=162 Identities=10% Similarity=0.071 Sum_probs=78.2
Q ss_pred EEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCC--CeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCC
Q 006384 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEK--QEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 74 ~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~--~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~ 149 (647)
+.+.| ++.+++.|+. + ..+.+||+.. ..+..+.... ........+.+ ++.+++.|+..
T Consensus 113 v~~sp--~g~~las~s~--D-------~~v~iwd~~~~~~~~~~~~~~~--~h~~~v~~v~~~p~~~~l~s~s~D----- 174 (330)
T 2hes_X 113 VAWSN--DGYYLATCSR--D-------KSVWIWETDESGEEYECISVLQ--EHSQDVKHVIWHPSEALLASSSYD----- 174 (330)
T ss_dssp EEECT--TSCEEEEEET--T-------SCEEEEECCTTCCCCEEEEEEC--CCSSCEEEEEECSSSSEEEEEETT-----
T ss_pred EEECC--CCCEEEEEeC--C-------CEEEEEeccCCCCCeEEEEEec--cCCCceEEEEECCCCCEEEEEcCC-----
Confidence 44444 4666666662 2 3577788742 2343322111 11111223333 45677777653
Q ss_pred ccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-C--CEEEEEecccCCCCceeeeCcEEEEEcCC------Cc
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-K--HKIIVFGGFYDTLREVRYYNDLYVFDLDQ------FK 220 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~--~~lyv~GG~~~~~~~~~~~~dv~~yD~~t------~~ 220 (647)
..+.+||..+..|..+.......... .++... + +.+++.|+.+. .+.+||+.+ ..
T Consensus 175 ------~~i~iW~~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~~~l~s~s~D~---------~v~iw~~~~~~~~~~~~ 238 (330)
T 2hes_X 175 ------DTVRIWKDYDDDWECVAVLNGHEGTV-WSSDFDKTEGVFRLCSGSDDS---------TVRVWKYMGDDEDDQQE 238 (330)
T ss_dssp ------SCEEEEEEETTEEEEEEEECCCSSCE-EEEEECCSSSSCEEEEEETTS---------CEEEEEEEEECTTSCEE
T ss_pred ------CeEEEEECCCCCeeEEEEccCCCCcE-EEEEecCCCCeeEEEEEeCCC---------eEEEEEecCCCccccce
Confidence 34667777777676554311111111 112222 2 34555666432 355555432 24
Q ss_pred eEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEee
Q 006384 221 WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (647)
Q Consensus 221 W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~ 288 (647)
|..+...+. .....-.+++...+.+++.||.++. +.+|+..+..|..+.
T Consensus 239 ~~~~~~~~~---~h~~~v~~v~~s~~~~l~s~~~dg~----------------v~iw~~~~~~~~~~~ 287 (330)
T 2hes_X 239 WVCEAILPD---VHKRQVYNVAWGFNGLIASVGADGV----------------LAVYEEVDGEWKVFA 287 (330)
T ss_dssp EEEEEECCS---CCSSCEEEEEECTTSCEEEEETTSC----------------EEEEEEETTEEEEEE
T ss_pred eEEeeeccc---ccccceEEEEEcCCCEEEEEeCCCE----------------EEEEEcCCCceEEEe
Confidence 554443311 1122223333335557777877655 677887777886654
No 89
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=94.64 E-value=2.9 Score=43.26 Aligned_cols=180 Identities=9% Similarity=0.036 Sum_probs=95.1
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCC
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~ 178 (647)
+.++.||..+.....+.... . ......+.+ ++.++++|+.. ..+.+||+.+......-. .
T Consensus 113 ~~v~lw~~~~~~~~~~~~~~--~-~~~v~~v~~s~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~----~ 174 (401)
T 4aez_A 113 RNVYVWNADSGSVSALAETD--E-STYVASVKWSHDGSFLSVGLGN-----------GLVDIYDVESQTKLRTMA----G 174 (401)
T ss_dssp TEEEEEETTTCCEEEEEECC--T-TCCEEEEEECTTSSEEEEEETT-----------SCEEEEETTTCCEEEEEC----C
T ss_pred CeEEEeeCCCCcEeEeeecC--C-CCCEEEEEECCCCCEEEEECCC-----------CeEEEEECcCCeEEEEec----C
Confidence 46899999988776554321 1 112223333 45666666642 358889988776433321 1
Q ss_pred CcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCC
Q 006384 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (647)
Q Consensus 179 ~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~ 257 (647)
......++.+++.+++.|+.. ..+.+||+.+..-...... .....-.+++.. ++.+++.|+.++.
T Consensus 175 ~~~~v~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~~~d~~ 240 (401)
T 4aez_A 175 HQARVGCLSWNRHVLSSGSRS---------GAIHHHDVRIANHQIGTLQ-----GHSSEVCGLAWRSDGLQLASGGNDNV 240 (401)
T ss_dssp CSSCEEEEEEETTEEEEEETT---------SEEEEEETTSSSCEEEEEE-----CCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CCCceEEEEECCCEEEEEcCC---------CCEEEEecccCcceeeEEc-----CCCCCeeEEEEcCCCCEEEEEeCCCe
Confidence 122223444566677777753 4688888874332211111 111112223333 6677888887655
Q ss_pred CCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE--CCeEEEecceeccccCccccccccCCcEEE
Q 006384 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYG 335 (647)
Q Consensus 258 ~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~--~~~iyifGG~~~~~~~~~~~~~~~~ndl~~ 335 (647)
+.+||+.+..-...-. .....-.++++. +..+++.||-. .-..|.+
T Consensus 241 ----------------v~iwd~~~~~~~~~~~----~~~~~v~~~~~~p~~~~ll~~~~gs------------~d~~i~i 288 (401)
T 4aez_A 241 ----------------VQIWDARSSIPKFTKT----NHNAAVKAVAWCPWQSNLLATGGGT------------MDKQIHF 288 (401)
T ss_dssp ----------------EEEEETTCSSEEEEEC----CCSSCCCEEEECTTSTTEEEEECCT------------TTCEEEE
T ss_pred ----------------EEEccCCCCCccEEec----CCcceEEEEEECCCCCCEEEEecCC------------CCCEEEE
Confidence 7888887654332211 111112233333 45677776421 1245999
Q ss_pred EECCCCcEE
Q 006384 336 FQLDNHRWY 344 (647)
Q Consensus 336 yd~~t~~W~ 344 (647)
||+.+..-.
T Consensus 289 ~d~~~~~~~ 297 (401)
T 4aez_A 289 WNAATGARV 297 (401)
T ss_dssp EETTTCCEE
T ss_pred EECCCCCEE
Confidence 998876533
No 90
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=94.53 E-value=1.3 Score=49.35 Aligned_cols=208 Identities=8% Similarity=-0.107 Sum_probs=100.6
Q ss_pred CcEEEEECC--C-CeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCC------CcEE
Q 006384 101 GDLYRYDVE--K-QEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT------NQWE 169 (647)
Q Consensus 101 ndl~~yd~~--~-~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t------~~W~ 169 (647)
..||.+++. . ...+.++.............+.+ +++.+++......... .......++++|+.+ ....
T Consensus 102 ~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~ 180 (662)
T 3azo_A 102 QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEG-PSDVRRFLAAVPLDGSAAADRSAVR 180 (662)
T ss_dssp CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSS-TTCEEEEEEEEETTSTTTTCGGGSE
T ss_pred CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCC-CCCceeEEEEEECCCCccccCCcee
Confidence 478999987 4 66666654210001122222333 4444444433210000 001236899999988 6666
Q ss_pred Ecc-cCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcC-CC---ceEEeccCCCCCCCCCceeeeEEEe
Q 006384 170 QLN-LKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLD-QF---KWQEIKPRFGSMWPSPRSGFQFFVY 244 (647)
Q Consensus 170 ~~~-~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~-t~---~W~~v~~~~~~~~P~~R~~~s~~~~ 244 (647)
.+. .. + .........-+++.+++.......... ....|+++|+. +. ....+... . .......+..
T Consensus 181 ~l~~~~--~-~~~~~~~~SpDG~~la~~~~~~~~~~~-~~~~i~~~d~~~~g~~~~~~~l~~~-----~-~~~~~~~~~s 250 (662)
T 3azo_A 181 ELSDDA--H-RFVTGPRLSPDGRQAVWLAWDHPRMPW-EGTELKTARVTEDGRFADTRTLLGG-----P-EEAIAQAEWA 250 (662)
T ss_dssp ESSCSC--S-SEECCCEECTTSSEEEEEEECTTCCTT-TCEEEEEEEECTTSCEEEEEEEEEE-----T-TBCEEEEEEC
T ss_pred EEEecC--C-CcccCceECCCCCEEEEEECCCCCCCC-CCcEEEEEEECCCCcccccEEeCCC-----C-CceEcceEEC
Confidence 664 31 1 111111222255544444432211000 12579999998 56 34444321 0 1112223333
Q ss_pred -CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCC---CCCCce-eeEEEEE-CCeEEEecceecc
Q 006384 245 -QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGM---PPGPRA-GFSMCVH-KKRALLFGGVVDM 318 (647)
Q Consensus 245 -~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~---~P~~R~-~~s~~~~-~~~iyifGG~~~~ 318 (647)
+++||+.+...+. ..+|++|+.+..+..+..... .|.-.. ..++++. ++++++.+.. .
T Consensus 251 pdg~l~~~~~~~~~--------------~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~- 314 (662)
T 3azo_A 251 PDGSLIVATDRTGW--------------WNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-G- 314 (662)
T ss_dssp TTSCEEEEECTTSS--------------CEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-S-
T ss_pred CCCeEEEEECCCCC--------------eEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-C-
Confidence 5667766654321 259999998888887754211 011110 1223444 5677666543 2
Q ss_pred ccCccccccccCCcEEEEECCCCcEEEe
Q 006384 319 EMKGDVIMSLFLNELYGFQLDNHRWYPL 346 (647)
Q Consensus 319 ~~~~~~~~~~~~ndl~~yd~~t~~W~~l 346 (647)
...||.+|+.+.....+
T Consensus 315 -----------~~~l~~~d~~~~~~~~l 331 (662)
T 3azo_A 315 -----------AAVLGILDPESGELVDA 331 (662)
T ss_dssp -----------SCEEEEEETTTTEEEEC
T ss_pred -----------ccEEEEEECCCCcEEEe
Confidence 35688888877665443
No 91
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=94.45 E-value=3.8 Score=42.20 Aligned_cols=104 Identities=12% Similarity=-0.053 Sum_probs=55.5
Q ss_pred CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCE-EEEEecccCCCCCcccCCC
Q 006384 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDE-VFLYGGYSKEVSTDKNQSE 266 (647)
Q Consensus 189 ~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~-Iyv~GG~~~~~~~~~~~~~ 266 (647)
++.+++.|+.. ..+.+||+.+..-...... .....-.+++.. ++. +++.|+.++.
T Consensus 258 ~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~g~~dg~--------- 314 (420)
T 3vl1_A 258 YGKYVIAGHVS---------GVITVHNVFSKEQTIQLPS-----KFTCSCNSLTVDGNNANYIYAGYENGM--------- 314 (420)
T ss_dssp TTEEEEEEETT---------SCEEEEETTTCCEEEEECC-----TTSSCEEEEEECSSCTTEEEEEETTSE---------
T ss_pred CCCEEEEEcCC---------CeEEEEECCCCceeEEccc-----ccCCCceeEEEeCCCCCEEEEEeCCCe---------
Confidence 56677777643 3588999887653322221 111122233333 344 7777776554
Q ss_pred CCceeeeEEEEeCCCCe--EEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCC
Q 006384 267 KGIIHSDLWSLDPRTWE--WSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (647)
Q Consensus 267 ~~~~~~dv~~yd~~t~~--W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (647)
+.+||+.+.. -..+... ....-.+++..++.+++.|+.. ..|.+|++.+
T Consensus 315 -------i~vwd~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~l~s~~~d--------------~~v~iw~~~~ 365 (420)
T 3vl1_A 315 -------LAQWDLRSPECPVGEFLIN----EGTPINNVYFAAGALFVSSGFD--------------TSIKLDIISD 365 (420)
T ss_dssp -------EEEEETTCTTSCSEEEEES----TTSCEEEEEEETTEEEEEETTT--------------EEEEEEEECC
T ss_pred -------EEEEEcCCCcCchhhhhcc----CCCCceEEEeCCCCEEEEecCC--------------ccEEEEeccC
Confidence 7888886642 2222210 1112223344578888887753 3477887655
No 92
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=94.42 E-value=2.1 Score=44.75 Aligned_cols=151 Identities=9% Similarity=-0.005 Sum_probs=77.0
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCc
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQE 150 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~ 150 (647)
++.+.| ++.+++.|+. + ..+.+||..+......-.. ....-..+.+ ++.+++.||...
T Consensus 113 ~~~~~p--~~~~l~s~s~--D-------g~i~vwd~~~~~~~~~l~~----h~~~V~~v~~~~~~~~l~sgs~D~----- 172 (410)
T 1vyh_C 113 RVIFHP--VFSVMVSASE--D-------ATIKVWDYETGDFERTLKG----HTDSVQDISFDHSGKLLASCSADM----- 172 (410)
T ss_dssp EEEECS--SSSEEEEEES--S-------SCEEEEETTTCCCCEEECC----CSSCEEEEEECTTSSEEEEEETTS-----
T ss_pred EEEEcC--CCCEEEEEeC--C-------CeEEEEECCCCcEEEEEec----cCCcEEEEEEcCCCCEEEEEeCCC-----
Confidence 344555 4667777773 2 3688889887654322111 1111222333 466777777543
Q ss_pred cccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCC
Q 006384 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (647)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (647)
.+.+||+.+..-.. . +......-.++.+ ++.+++.|+.+ ..+.+||+.+......-..
T Consensus 173 ------~i~iwd~~~~~~~~--~--~~~h~~~V~~v~~~p~~~~l~s~s~D---------~~i~~wd~~~~~~~~~~~~- 232 (410)
T 1vyh_C 173 ------TIKLWDFQGFECIR--T--MHGHDHNVSSVSIMPNGDHIVSASRD---------KTIKMWEVQTGYCVKTFTG- 232 (410)
T ss_dssp ------CCCEEETTSSCEEE--C--CCCCSSCEEEEEECSSSSEEEEEETT---------SEEEEEETTTCCEEEEEEC-
T ss_pred ------eEEEEeCCCCceeE--E--EcCCCCCEEEEEEeCCCCEEEEEeCC---------CeEEEEECCCCcEEEEEeC-
Confidence 35677877654322 2 1111111122223 45666777753 4688899887654322111
Q ss_pred CCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeE
Q 006384 229 GSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW 284 (647)
Q Consensus 229 ~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W 284 (647)
....-..+... ++.+++.|+.++. +.+||+.+...
T Consensus 233 -----h~~~v~~~~~~~~g~~l~s~s~D~~----------------v~vwd~~~~~~ 268 (410)
T 1vyh_C 233 -----HREWVRMVRPNQDGTLIASCSNDQT----------------VRVWVVATKEC 268 (410)
T ss_dssp -----CSSCEEEEEECTTSSEEEEEETTSC----------------EEEEETTTCCE
T ss_pred -----CCccEEEEEECCCCCEEEEEcCCCe----------------EEEEECCCCce
Confidence 11111122222 5677778877654 66777766543
No 93
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=94.41 E-value=8 Score=43.82 Aligned_cols=118 Identities=16% Similarity=0.187 Sum_probs=67.6
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCC--eEEEecCCCCC---CC---cceeEEEEECCEEEEEeCCcCCCCCccc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNSP---PP---RSAHQAVSWKNYLYIFGGEFTSPNQERF 152 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~--~W~~l~s~~~P---~~---R~~ha~v~~~~~iyv~GG~~~~~~~~~~ 152 (647)
++.||+... .+.|+.+|..+. .|+.-...... .. ....+.++.++.||+...
T Consensus 70 ~g~vyv~~~----------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~---------- 129 (689)
T 1yiq_A 70 DGVMYTTGP----------FSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL---------- 129 (689)
T ss_dssp TTEEEEECG----------GGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT----------
T ss_pred CCEEEEEcC----------CCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc----------
Confidence 788888765 246999999876 58854321100 00 011234556888888642
Q ss_pred cccCcEEEEECCCCc--EEEccc-CCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc--eEEe
Q 006384 153 HHYKDFWMLDLKTNQ--WEQLNL-KGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEI 224 (647)
Q Consensus 153 ~~~~dv~~yD~~t~~--W~~~~~-~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v 224 (647)
-..++.+|..|++ |+.-.. ..........+.++.++.+|+-.+.... .....|+.||..+.+ |+.-
T Consensus 130 --dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~----~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 130 --DGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEF----GVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp --TSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTT----CCBCEEEEEETTTCCEEEEEE
T ss_pred --CCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCcc----CCCCEEEEEECCCCcEEEEec
Confidence 1468999998874 876442 1101112222345678888874322111 123579999998876 8764
No 94
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=94.41 E-value=2.7 Score=42.29 Aligned_cols=215 Identities=12% Similarity=0.115 Sum_probs=100.5
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCc
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQE 150 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~ 150 (647)
.+++.| +++||+.+.. + -.+.+++|++.+.+++.+...... ...-..++.. +..||+.+..
T Consensus 44 ~~a~sp--dg~l~~~~~~---~----~~~~v~~~~~~~g~~~~~~~~~~~-~~~p~~~a~spdg~~l~~~~~~------- 106 (347)
T 3hfq_A 44 YLALSA--KDCLYSVDKE---D----DEGGIAAWQIDGQTAHKLNTVVAP-GTPPAYVAVDEARQLVYSANYH------- 106 (347)
T ss_dssp CEEECT--TCEEEEEEEE---T----TEEEEEEEEEETTEEEEEEEEEEE-SCCCSEEEEETTTTEEEEEETT-------
T ss_pred eEEEcc--CCeEEEEEec---C----CCceEEEEEecCCcEEEeeeeecC-CCCCEEEEECCCCCEEEEEeCC-------
Confidence 355666 5677766541 1 024789999988887766431100 1111223333 3457776531
Q ss_pred cccccCcEEEEECC-CCcEEEccc---CCC-CCCc----ceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcC-CC
Q 006384 151 RFHHYKDFWMLDLK-TNQWEQLNL---KGC-PSPR----SGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLD-QF 219 (647)
Q Consensus 151 ~~~~~~dv~~yD~~-t~~W~~~~~---~~~-P~~R----~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~-t~ 219 (647)
-..+.+|++. +.....+.. .+. |.+| .-+.+++. ++++|+.+.. .+.+++|++. +.
T Consensus 107 ----~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~---------~~~v~~~~~~~~g 173 (347)
T 3hfq_A 107 ----KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG---------SDKVYVYNVSDAG 173 (347)
T ss_dssp ----TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT---------TTEEEEEEECTTS
T ss_pred ----CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC---------CCEEEEEEECCCC
Confidence 1356677764 334433322 111 2111 12223332 5567765432 2468888887 56
Q ss_pred ceEEeccCCCCCCCCCceeeeEEEe-CC-EEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCC-
Q 006384 220 KWQEIKPRFGSMWPSPRSGFQFFVY-QD-EVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGP- 296 (647)
Q Consensus 220 ~W~~v~~~~~~~~P~~R~~~s~~~~-~~-~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~- 296 (647)
+...+..... +....-..++.. ++ .||+.+..... -.+|.++..+..+..+......|..
T Consensus 174 ~~~~~~~~~~---~~g~~p~~~~~spdg~~l~v~~~~~~~--------------v~v~~~~~~~g~~~~~~~~~~~~~~~ 236 (347)
T 3hfq_A 174 QLSEQSVLTM---EAGFGPRHLVFSPDGQYAFLAGELSSQ--------------IASLKYDTQTGAFTQLGIVKTIPADY 236 (347)
T ss_dssp CEEEEEEEEC---CTTCCEEEEEECTTSSEEEEEETTTTE--------------EEEEEEETTTTEEEEEEEEESSCTTC
T ss_pred cEEEeeeEEc---CCCCCCceEEECCCCCEEEEEeCCCCE--------------EEEEEecCCCCceEEeeeeeecCCCC
Confidence 5554432210 111111123333 44 47776543322 1255555556777655433222221
Q ss_pred ---ceeeEEEEE-CCe-EEEecceeccccCccccccccCCcEEEEECCC-CcEEEeEe
Q 006384 297 ---RAGFSMCVH-KKR-ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN-HRWYPLEL 348 (647)
Q Consensus 297 ---R~~~s~~~~-~~~-iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t-~~W~~l~~ 348 (647)
.....+++. +++ ||+.+.. .+.|.+|++.. ..+..+..
T Consensus 237 ~~~~~~~~i~~spdG~~l~v~~~~--------------~~~v~v~~~~~~g~~~~~~~ 280 (347)
T 3hfq_A 237 TAHNGAAAIRLSHDGHFLYVSNRG--------------YNTLAVFAVTADGHLTLIQQ 280 (347)
T ss_dssp CSCCEEEEEEECTTSCEEEEEEET--------------TTEEEEEEECGGGCEEEEEE
T ss_pred CCCCcceeEEECCCCCEEEEEeCC--------------CCEEEEEEECCCCcEEEeEE
Confidence 112233333 444 6665431 25688888763 34554443
No 95
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=94.40 E-value=2.2 Score=42.13 Aligned_cols=210 Identities=7% Similarity=-0.094 Sum_probs=106.7
Q ss_pred cceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCC
Q 006384 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPN 148 (647)
Q Consensus 70 ~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~ 148 (647)
...+.+..|. ++.||+++.. .+.+++||+.+. .+.+... . ..-++++.. ++.||+....
T Consensus 29 ~~eg~~~d~~-g~~l~~~~~~---------~~~i~~~~~~~~-~~~~~~~---~-~~~~~l~~~~dg~l~v~~~~----- 88 (296)
T 3e5z_A 29 WTEGPVYVPA-RSAVIFSDVR---------QNRTWAWSDDGQ-LSPEMHP---S-HHQNGHCLNKQGHLIACSHG----- 88 (296)
T ss_dssp SEEEEEEEGG-GTEEEEEEGG---------GTEEEEEETTSC-EEEEESS---C-SSEEEEEECTTCCEEEEETT-----
T ss_pred cccCCeEeCC-CCEEEEEeCC---------CCEEEEEECCCC-eEEEECC---C-CCcceeeECCCCcEEEEecC-----
Confidence 4456666662 3458888762 247899999988 6665432 1 122333332 5678876531
Q ss_pred CccccccCcEEEEECCCCcEEEcccCC--CCCCcceeEEEEECCEEEEE----ecccCC----CCceeeeCcEEEEEcCC
Q 006384 149 QERFHHYKDFWMLDLKTNQWEQLNLKG--CPSPRSGHRMVLYKHKIIVF----GGFYDT----LREVRYYNDLYVFDLDQ 218 (647)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~~--~P~~R~~h~~~~~~~~lyv~----GG~~~~----~~~~~~~~dv~~yD~~t 218 (647)
...+++||+.+++...+.... .+..+....++--+++||+. |..... .........||.|++.
T Consensus 89 ------~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (296)
T 3e5z_A 89 ------LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD- 161 (296)
T ss_dssp ------TTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-
T ss_pred ------CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-
Confidence 146899999888877664311 11112222223336788886 432100 0000012478999987
Q ss_pred CceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCC-CCeE-EEeec-CCCCC
Q 006384 219 FKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR-TWEW-SKVKK-IGMPP 294 (647)
Q Consensus 219 ~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~-t~~W-~~v~~-~g~~P 294 (647)
.+...+... ...+ .+++.. ++.+++.+.... .+++|++. +.+. ..... .....
T Consensus 162 g~~~~~~~~----~~~~---~gi~~s~dg~~lv~~~~~~----------------~i~~~~~~~~g~~~~~~~~~~~~~~ 218 (296)
T 3e5z_A 162 GTLSAPIRD----RVKP---NGLAFLPSGNLLVSDTGDN----------------ATHRYCLNARGETEYQGVHFTVEPG 218 (296)
T ss_dssp SCEEEEECC----CSSE---EEEEECTTSCEEEEETTTT----------------EEEEEEECSSSCEEEEEEEECCSSS
T ss_pred CCEEEeecC----CCCC---ccEEECCCCCEEEEeCCCC----------------eEEEEEECCCCcCcCCCeEeeCCCC
Confidence 555544322 0111 233333 455554443322 47888875 4444 21111 11001
Q ss_pred CCceeeEEEEE-CCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 295 GPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 295 ~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
.| .++++- ++.||+..+ +.|++||+.......+..
T Consensus 219 ~p---~~i~~d~~G~l~v~~~----------------~~v~~~~~~g~~~~~~~~ 254 (296)
T 3e5z_A 219 KT---DGLRVDAGGLIWASAG----------------DGVHVLTPDGDELGRVLT 254 (296)
T ss_dssp CC---CSEEEBTTSCEEEEET----------------TEEEEECTTSCEEEEEEC
T ss_pred CC---CeEEECCCCCEEEEcC----------------CeEEEECCCCCEEEEEEC
Confidence 11 123333 577777651 348999988655555544
No 96
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=94.36 E-value=2.9 Score=42.07 Aligned_cols=161 Identities=8% Similarity=0.009 Sum_probs=79.3
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCC
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~ 179 (647)
.+..|+..+..-...-.. ... ....+.+ ++.+++.|+.. ..+.+||+.+.+-...-. ....
T Consensus 145 ~v~i~~~~~~~~~~~~~~---~~~-~v~~~~~spdg~~lasg~~d-----------g~i~iwd~~~~~~~~~~~--~h~~ 207 (321)
T 3ow8_A 145 KVNIFGVESGKKEYSLDT---RGK-FILSIAYSPDGKYLASGAID-----------GIINIFDIATGKLLHTLE--GHAM 207 (321)
T ss_dssp EEEEEETTTCSEEEEEEC---SSS-CEEEEEECTTSSEEEEEETT-----------SCEEEEETTTTEEEEEEC--CCSS
T ss_pred cEEEEEcCCCceeEEecC---CCc-eEEEEEECCCCCEEEEEcCC-----------CeEEEEECCCCcEEEEEc--ccCC
Confidence 567778776543321111 111 1222333 46667777643 358889998875432211 1111
Q ss_pred cceeEEEE-ECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCC
Q 006384 180 RSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (647)
Q Consensus 180 R~~h~~~~-~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~ 257 (647)
... +++. -++.+++.|+.+ ..+.+||+.+......-.. ....-.+++.. ++.+++.|+.++.
T Consensus 208 ~v~-~l~~spd~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~------h~~~v~~~~~sp~~~~l~s~s~D~~ 271 (321)
T 3ow8_A 208 PIR-SLTFSPDSQLLVTASDD---------GYIKIYDVQHANLAGTLSG------HASWVLNVAFCPDDTHFVSSSSDKS 271 (321)
T ss_dssp CCC-EEEECTTSCEEEEECTT---------SCEEEEETTTCCEEEEECC------CSSCEEEEEECTTSSEEEEEETTSC
T ss_pred cee-EEEEcCCCCEEEEEcCC---------CeEEEEECCCcceeEEEcC------CCCceEEEEECCCCCEEEEEeCCCc
Confidence 111 2222 256777777753 3588889877654332111 11111223333 5677788887655
Q ss_pred CCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEecce
Q 006384 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGV 315 (647)
Q Consensus 258 ~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG~ 315 (647)
+.+||+.+.+-...-. + ....-.++++. ++..++.||.
T Consensus 272 ----------------v~iwd~~~~~~~~~~~-~---h~~~v~~v~~s~~g~~l~s~~~ 310 (321)
T 3ow8_A 272 ----------------VKVWDVGTRTCVHTFF-D---HQDQVWGVKYNGNGSKIVSVGD 310 (321)
T ss_dssp ----------------EEEEETTTTEEEEEEC-C---CSSCEEEEEECTTSSEEEEEET
T ss_pred ----------------EEEEeCCCCEEEEEEc-C---CCCcEEEEEECCCCCEEEEEeC
Confidence 7788887765333211 1 11112233333 4566677764
No 97
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=94.36 E-value=5.6 Score=41.75 Aligned_cols=172 Identities=11% Similarity=0.077 Sum_probs=87.6
Q ss_pred CEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEEE
Q 006384 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWM 160 (647)
Q Consensus 82 ~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~~ 160 (647)
+.+++.|+. + +.+..||+.+.+-...-.. ....-.+++.. ++..++.|+.. ..+.+
T Consensus 280 ~~~l~~~~~--d-------~~i~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~sg~~d-----------g~i~v 336 (464)
T 3v7d_B 280 GNIVVSGSY--D-------NTLIVWDVAQMKCLYILSG---HTDRIYSTIYDHERKRCISASMD-----------TTIRI 336 (464)
T ss_dssp TTEEEEEET--T-------SCEEEEETTTTEEEEEECC---CSSCEEEEEEETTTTEEEEEETT-----------SCEEE
T ss_pred CCEEEEEeC--C-------CeEEEEECCCCcEEEEecC---CCCCEEEEEEcCCCCEEEEEeCC-----------CcEEE
Confidence 455666662 2 3688999987765433221 11112223333 45566666642 45889
Q ss_pred EECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeee
Q 006384 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240 (647)
Q Consensus 161 yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s 240 (647)
||+.+.+-...- ......-.++.+.+..++.|+.+ ..+.+||+.+..-...... . ......
T Consensus 337 wd~~~~~~~~~~----~~h~~~v~~~~~~~~~l~s~s~d---------g~v~vwd~~~~~~~~~~~~-----~-~~~~~~ 397 (464)
T 3v7d_B 337 WDLENGELMYTL----QGHTALVGLLRLSDKFLVSAAAD---------GSIRGWDANDYSRKFSYHH-----T-NLSAIT 397 (464)
T ss_dssp EETTTTEEEEEE----CCCSSCEEEEEECSSEEEEEETT---------SEEEEEETTTCCEEEEEEC-----T-TCCCEE
T ss_pred EECCCCcEEEEE----eCCCCcEEEEEEcCCEEEEEeCC---------CcEEEEECCCCceeeeecC-----C-CCccEE
Confidence 999877533221 11122223445566677777753 3588899887653322211 1 112222
Q ss_pred EEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecce
Q 006384 241 FFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGV 315 (647)
Q Consensus 241 ~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~ 315 (647)
+...++.+++.|+ ++. +.+||+.+.+-...... +....-.+++..++.+++.++.
T Consensus 398 ~~~~~~~~l~~~~-dg~----------------i~iwd~~~g~~~~~~~~---~~~~~v~~v~~~~~~l~~~~~~ 452 (464)
T 3v7d_B 398 TFYVSDNILVSGS-ENQ----------------FNIYNLRSGKLVHANIL---KDADQIWSVNFKGKTLVAAVEK 452 (464)
T ss_dssp EEEECSSEEEEEE-TTE----------------EEEEETTTCCEEESCTT---TTCSEEEEEEEETTEEEEEEEE
T ss_pred EEEeCCCEEEEec-CCe----------------EEEEECCCCcEEehhhc---cCCCcEEEEEecCCEEEEEEEe
Confidence 3333666777666 333 78999888765442121 1222223344445555555543
No 98
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=94.35 E-value=4.9 Score=40.69 Aligned_cols=62 Identities=6% Similarity=0.062 Sum_probs=31.2
Q ss_pred EEEEeCCCCeEEEeecCCCCCCCceee-EEEEE-CCe-EEEecceeccccCccccccccCCcEEEEECC--CCcEEEeEe
Q 006384 274 LWSLDPRTWEWSKVKKIGMPPGPRAGF-SMCVH-KKR-ALLFGGVVDMEMKGDVIMSLFLNELYGFQLD--NHRWYPLEL 348 (647)
Q Consensus 274 v~~yd~~t~~W~~v~~~g~~P~~R~~~-s~~~~-~~~-iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~--t~~W~~l~~ 348 (647)
+.+|++.+..+..+......|....+. .+++. +++ ||+.. ... .+.|.+|++. +.++..+..
T Consensus 235 v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~-~~~------------~~~i~v~~~~~~~g~~~~~~~ 301 (361)
T 3scy_A 235 VIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASN-RLK------------ADGVAIFKVDETNGTLTKVGY 301 (361)
T ss_dssp EEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEE-CSS------------SCEEEEEEECTTTCCEEEEEE
T ss_pred EEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEEC-CCC------------CCEEEEEEEcCCCCcEEEeeE
Confidence 777777777776654432223222222 33333 454 44433 210 2457777764 667766654
No 99
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=94.33 E-value=2.4 Score=45.59 Aligned_cols=59 Identities=17% Similarity=0.278 Sum_probs=41.5
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEE
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYV 213 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~ 213 (647)
++.+|+|-| +..|+||..+++.....-.++|. --++..+.+++|+|-| +..|.
T Consensus 158 ~~~~yfFkG-------------~~yw~yd~~~~~~~~~~w~gi~~---iDAA~~~~g~~YfFkG-----------~~y~r 210 (460)
T 1qhu_A 158 DEGILFFQG-------------NRKWFWDLTTGTKKERSWPAVGN---CTSALRWLGRYYCFQG-----------NQFLR 210 (460)
T ss_dssp SSEEEEEET-------------TEEEEEETTTTEEEEECCTTSCC---CSEEEEETTEEEEEET-----------TEEEE
T ss_pred CCeEEEEec-------------ccEEEEecccceeecccCCCCCc---cchheeeCCceEEEEC-----------CEEEE
Confidence 678899988 46899999888766443333342 3456667899999988 35677
Q ss_pred EEcCCC
Q 006384 214 FDLDQF 219 (647)
Q Consensus 214 yD~~t~ 219 (647)
||..+.
T Consensus 211 fd~~~~ 216 (460)
T 1qhu_A 211 FNPVSG 216 (460)
T ss_dssp ECTTTC
T ss_pred EcCccC
Confidence 887543
No 100
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=94.33 E-value=2.4 Score=40.83 Aligned_cols=191 Identities=7% Similarity=0.013 Sum_probs=98.7
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCc
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~ 150 (647)
+++++.+ ++.|||... + +.+++||+.......+.... ...-+.++.. ++.||+....
T Consensus 70 ~~i~~~~--~g~l~v~~~---~-------~~i~~~d~~~~~~~~~~~~~---~~~p~~i~~~~~g~l~v~~~~------- 127 (270)
T 1rwi_B 70 QGLAVDG--AGTVYVTDF---N-------NRVVTLAAGSNNQTVLPFDG---LNYPEGLAVDTQGAVYVADRG------- 127 (270)
T ss_dssp CCEEECT--TCCEEEEET---T-------TEEEEECTTCSCCEECCCCS---CSSEEEEEECTTCCEEEEEGG-------
T ss_pred ceeEECC--CCCEEEEcC---C-------CEEEEEeCCCceEeeeecCC---cCCCcceEECCCCCEEEEECC-------
Confidence 4455554 456777643 1 36888998876555443211 1222334433 5678887532
Q ss_pred cccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCC
Q 006384 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (647)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~ 229 (647)
...+++|+..+.........+. ..-+.+++. +++||+.... .+.+++||+.+..-......
T Consensus 128 ----~~~i~~~~~~~~~~~~~~~~~~---~~p~~i~~~~~g~l~v~~~~---------~~~i~~~~~~~~~~~~~~~~-- 189 (270)
T 1rwi_B 128 ----NNRVVKLAAGSKTQTVLPFTGL---NDPDGVAVDNSGNVYVTDTD---------NNRVVKLEAESNNQVVLPFT-- 189 (270)
T ss_dssp ----GTEEEEECTTCCSCEECCCCSC---CSCCCEEECTTCCEEEEEGG---------GTEEEEECTTTCCEEECCCS--
T ss_pred ----CCEEEEEECCCceeEeeccccC---CCceeEEEeCCCCEEEEECC---------CCEEEEEecCCCceEeeccc--
Confidence 2468888876665444322111 112234433 5678886542 24688999887654332211
Q ss_pred CCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CC
Q 006384 230 SMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KK 307 (647)
Q Consensus 230 ~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~ 307 (647)
.. ..-.++++. ++.|||...... .+++|++....-...... ....-.++++- ++
T Consensus 190 ---~~-~~p~~i~~d~~g~l~v~~~~~~----------------~v~~~~~~~~~~~~~~~~----~~~~p~~i~~~~~g 245 (270)
T 1rwi_B 190 ---DI-TAPWGIAVDEAGTVYVTEHNTN----------------QVVKLLAGSTTSTVLPFT----GLNTPLAVAVDSDR 245 (270)
T ss_dssp ---SC-CSEEEEEECTTCCEEEEETTTS----------------CEEEECTTCSCCEECCCC----SCSCEEEEEECTTC
T ss_pred ---CC-CCceEEEECCCCCEEEEECCCC----------------cEEEEcCCCCcceeeccC----CCCCceeEEECCCC
Confidence 11 112234444 457887664333 378888876543322111 11122334443 46
Q ss_pred eEEEecceeccccCccccccccCCcEEEEECCC
Q 006384 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (647)
Q Consensus 308 ~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (647)
.||+.... .+.|.+|++..
T Consensus 246 ~l~v~~~~--------------~~~v~~~~~~~ 264 (270)
T 1rwi_B 246 TVYVADRG--------------NDRVVKLTSLE 264 (270)
T ss_dssp CEEEEEGG--------------GTEEEEECCCG
T ss_pred CEEEEECC--------------CCEEEEEcCCC
Confidence 77776543 24577777653
No 101
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=94.30 E-value=8.9 Score=43.27 Aligned_cols=199 Identities=11% Similarity=-0.002 Sum_probs=98.7
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEECC-EEEEEeCCcCCCC--CccccccCcEEEEECCCCcE--EEcccCC
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKN-YLYIFGGEFTSPN--QERFHHYKDFWMLDLKTNQW--EQLNLKG 175 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~-~iyv~GG~~~~~~--~~~~~~~~dv~~yD~~t~~W--~~~~~~~ 175 (647)
..++++|+.+++...... +..+....+-. ++ .||...- ..... .........||++++.+..= ..+..
T Consensus 155 ~~i~v~dl~tg~~~~~~~---~~~k~~~~~Ws-Dg~~l~y~~~-~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~-- 227 (693)
T 3iuj_A 155 REIHLMDVESKQPLETPL---KDVKFSGISWL-GNEGFFYSSY-DKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFG-- 227 (693)
T ss_dssp EEEEEEETTTCSEEEEEE---EEEESCCCEEE-TTTEEEEEES-SCCC-------CCCCEEEEEETTSCGGGCEEEES--
T ss_pred EEEEEEECCCCCCCcccc---CCceeccEEEe-CCCEEEEEEe-cCcccccccccCCCcEEEEEECCCCcccceEEEe--
Confidence 478999999998765421 11112222223 54 4444332 21100 00001235689988877642 12211
Q ss_pred CCC--CcceeEEE-EECCEEEEEecccCCCCceeeeCcEEEEEcCCC--ceEEeccCCCCCCCCCceeeeEEEeCCEEEE
Q 006384 176 CPS--PRSGHRMV-LYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--KWQEIKPRFGSMWPSPRSGFQFFVYQDEVFL 250 (647)
Q Consensus 176 ~P~--~R~~h~~~-~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~--~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv 250 (647)
.+. +....... .-+++.++|...... ..+.+|++|+.+. .|..+... ...... .....++.||+
T Consensus 228 ~~~~~~~~~~~~~~SpDg~~l~~~~~~~~-----~~~~i~~~d~~~~~~~~~~l~~~-----~~~~~~-~~~~~g~~l~~ 296 (693)
T 3iuj_A 228 AIPAQHHRYVGATVTEDDRFLLISAANST-----SGNRLYVKDLSQENAPLLTVQGD-----LDADVS-LVDNKGSTLYL 296 (693)
T ss_dssp CSGGGCCSEEEEEECTTSCEEEEEEESSS-----SCCEEEEEETTSTTCCCEEEECS-----SSSCEE-EEEEETTEEEE
T ss_pred cCCCCCeEEEEEEEcCCCCEEEEEEccCC-----CCcEEEEEECCCCCCceEEEeCC-----CCceEE-EEeccCCEEEE
Confidence 121 22222222 224443333322111 1368999998766 78887654 112211 23345889998
Q ss_pred EecccCCCCCcccCCCCCceeeeEEEEeCCCC---eEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCcccccc
Q 006384 251 YGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW---EWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMS 327 (647)
Q Consensus 251 ~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~---~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~ 327 (647)
....+.. ...|+.+++.+. .|+.+.+. .+. .. +....++.|++..-...
T Consensus 297 ~t~~~~~-------------~~~l~~~d~~~~~~~~~~~l~~~--~~~--~~-~~s~~g~~lv~~~~~~g---------- 348 (693)
T 3iuj_A 297 LTNRDAP-------------NRRLVTVDAANPGPAHWRDLIPE--RQQ--VL-TVHSGSGYLFAEYMVDA---------- 348 (693)
T ss_dssp EECTTCT-------------TCEEEEEETTSCCGGGCEEEECC--CSS--CE-EEEEETTEEEEEEEETT----------
T ss_pred EECCCCC-------------CCEEEEEeCCCCCccccEEEecC--CCC--EE-EEEEECCEEEEEEEECC----------
Confidence 8754321 235888988653 48877542 111 22 44555666665443221
Q ss_pred ccCCcEEEEECCCCcEEEeE
Q 006384 328 LFLNELYGFQLDNHRWYPLE 347 (647)
Q Consensus 328 ~~~ndl~~yd~~t~~W~~l~ 347 (647)
...|+++++.......+.
T Consensus 349 --~~~l~~~d~~g~~~~~l~ 366 (693)
T 3iuj_A 349 --TARVEQFDYEGKRVREVA 366 (693)
T ss_dssp --EEEEEEECTTSCEEEEEC
T ss_pred --eeEEEEEECCCCeeEEee
Confidence 346888888765444443
No 102
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=94.25 E-value=3.6 Score=40.42 Aligned_cols=169 Identities=13% Similarity=0.033 Sum_probs=82.4
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCC-cceeEEEEE-CCEEEEE----eCCcC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPP-RSAHQAVSW-KNYLYIF----GGEFT 145 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~-R~~ha~v~~-~~~iyv~----GG~~~ 145 (647)
.++++.+ ++.||+... + .+.+++||+.+.+...+.......+ ..-..++.. ++.||+. |....
T Consensus 72 ~~l~~~~--dg~l~v~~~----~-----~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~ 140 (296)
T 3e5z_A 72 NGHCLNK--QGHLIACSH----G-----LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKP 140 (296)
T ss_dssp EEEEECT--TCCEEEEET----T-----TTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCG
T ss_pred ceeeECC--CCcEEEEec----C-----CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccc
Confidence 4455555 566776543 1 1368999998888776643210011 111122222 5788886 32100
Q ss_pred CC--CCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcC-CCce
Q 006384 146 SP--NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLD-QFKW 221 (647)
Q Consensus 146 ~~--~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~-t~~W 221 (647)
.. ..........+|+|++. ++...+... . ....++++. ++++++.... .+.+++|++. +.+.
T Consensus 141 ~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~-~---~~~~gi~~s~dg~~lv~~~~---------~~~i~~~~~~~~g~~ 206 (296)
T 3e5z_A 141 EEGYGGEMELPGRWVFRLAPD-GTLSAPIRD-R---VKPNGLAFLPSGNLLVSDTG---------DNATHRYCLNARGET 206 (296)
T ss_dssp GGSSCCCCCSSSCEEEEECTT-SCEEEEECC-C---SSEEEEEECTTSCEEEEETT---------TTEEEEEEECSSSCE
T ss_pred cccccccccCCCcEEEEECCC-CCEEEeecC-C---CCCccEEECCCCCEEEEeCC---------CCeEEEEEECCCCcC
Confidence 00 00000012479999987 555554321 1 111233332 4555544332 2578899886 4555
Q ss_pred -EEecc-CCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEee
Q 006384 222 -QEIKP-RFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (647)
Q Consensus 222 -~~v~~-~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~ 288 (647)
..... .... ..| .+++.. ++.|||.. .. .|.+|++.......+.
T Consensus 207 ~~~~~~~~~~~--~~p---~~i~~d~~G~l~v~~--~~----------------~v~~~~~~g~~~~~~~ 253 (296)
T 3e5z_A 207 EYQGVHFTVEP--GKT---DGLRVDAGGLIWASA--GD----------------GVHVLTPDGDELGRVL 253 (296)
T ss_dssp EEEEEEECCSS--SCC---CSEEEBTTSCEEEEE--TT----------------EEEEECTTSCEEEEEE
T ss_pred cCCCeEeeCCC--CCC---CeEEECCCCCEEEEc--CC----------------eEEEECCCCCEEEEEE
Confidence 21111 1000 111 123343 67788776 22 3889999866555554
No 103
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=94.20 E-value=3.1 Score=41.88 Aligned_cols=175 Identities=7% Similarity=0.006 Sum_probs=89.4
Q ss_pred CcEEEEECCCCeEEE-ecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCC
Q 006384 101 GDLYRYDVEKQEWKV-ISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (647)
Q Consensus 101 ndl~~yd~~~~~W~~-l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~ 178 (647)
..+..||+.+.+-.. +.... . ...+++.. ++.+++.|+.. ..+.+||+.+..-...-. ..
T Consensus 102 ~~i~lWd~~~~~~~~~~~~~~--~--~~~~~~~spdg~~l~~g~~d-----------g~v~i~~~~~~~~~~~~~---~~ 163 (321)
T 3ow8_A 102 AHIRLWDLENGKQIKSIDAGP--V--DAWTLAFSPDSQYLATGTHV-----------GKVNIFGVESGKKEYSLD---TR 163 (321)
T ss_dssp SEEEEEETTTTEEEEEEECCT--T--CCCCEEECTTSSEEEEECTT-----------SEEEEEETTTCSEEEEEE---CS
T ss_pred CcEEEEECCCCCEEEEEeCCC--c--cEEEEEECCCCCEEEEEcCC-----------CcEEEEEcCCCceeEEec---CC
Confidence 367788888775432 22211 1 11122222 45666777642 457888887765332211 11
Q ss_pred CcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccC
Q 006384 179 PRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSK 256 (647)
Q Consensus 179 ~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~ 256 (647)
...-.+++.. ++++++.|+.+ ..+.+||+.+.+-...-.. ....-.+++.. ++.+++.|+.++
T Consensus 164 ~~~v~~~~~spdg~~lasg~~d---------g~i~iwd~~~~~~~~~~~~------h~~~v~~l~~spd~~~l~s~s~dg 228 (321)
T 3ow8_A 164 GKFILSIAYSPDGKYLASGAID---------GIINIFDIATGKLLHTLEG------HAMPIRSLTFSPDSQLLVTASDDG 228 (321)
T ss_dssp SSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTTEEEEEECC------CSSCCCEEEECTTSCEEEEECTTS
T ss_pred CceEEEEEECCCCCEEEEEcCC---------CeEEEEECCCCcEEEEEcc------cCCceeEEEEcCCCCEEEEEcCCC
Confidence 1111222222 56677777753 4588899887654322111 01111123333 667888888765
Q ss_pred CCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEecceeccccCccccccccCCcEEE
Q 006384 257 EVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYG 335 (647)
Q Consensus 257 ~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~ 335 (647)
. +.+||+.+......-. + ....-.++++. ++..++.|+.. ..|.+
T Consensus 229 ~----------------i~iwd~~~~~~~~~~~-~---h~~~v~~~~~sp~~~~l~s~s~D--------------~~v~i 274 (321)
T 3ow8_A 229 Y----------------IKIYDVQHANLAGTLS-G---HASWVLNVAFCPDDTHFVSSSSD--------------KSVKV 274 (321)
T ss_dssp C----------------EEEEETTTCCEEEEEC-C---CSSCEEEEEECTTSSEEEEEETT--------------SCEEE
T ss_pred e----------------EEEEECCCcceeEEEc-C---CCCceEEEEECCCCCEEEEEeCC--------------CcEEE
Confidence 5 7788887655433211 1 11111223333 56677777643 35889
Q ss_pred EECCCCc
Q 006384 336 FQLDNHR 342 (647)
Q Consensus 336 yd~~t~~ 342 (647)
||+.+.+
T Consensus 275 wd~~~~~ 281 (321)
T 3ow8_A 275 WDVGTRT 281 (321)
T ss_dssp EETTTTE
T ss_pred EeCCCCE
Confidence 9987653
No 104
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=94.19 E-value=1.2 Score=45.37 Aligned_cols=98 Identities=13% Similarity=0.134 Sum_probs=46.6
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCC
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~ 179 (647)
.+|.+|+.+.+++.+.......|+ .++.. +..||+.+....... .-.+|.++..++....+..... ..
T Consensus 30 ~~~~~d~~~g~~~~~~~~~~~~p~---~l~~spdg~~l~~~~~~~~~~~------~v~~~~~~~~~g~~~~~~~~~~-~~ 99 (361)
T 3scy_A 30 YTFRFNEETGESLPLSDAEVANPS---YLIPSADGKFVYSVNEFSKDQA------AVSAFAFDKEKGTLHLLNTQKT-MG 99 (361)
T ss_dssp EEEEEETTTCCEEEEEEEECSCCC---SEEECTTSSEEEEEECCSSTTC------EEEEEEEETTTTEEEEEEEEEC-SS
T ss_pred EEEEEeCCCCCEEEeecccCCCCc---eEEECCCCCEEEEEEccCCCCC------cEEEEEEeCCCCcEEEeeEecc-CC
Confidence 466778888888766532111111 12222 345777665311110 1234666776677776654111 11
Q ss_pred cceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCC
Q 006384 180 RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (647)
Q Consensus 180 R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (647)
...+..+.-++.||+... . -..+.+|++..
T Consensus 100 ~~p~~~~~dg~~l~~~~~-~--------~~~v~~~~~~~ 129 (361)
T 3scy_A 100 ADPCYLTTNGKNIVTANY-S--------GGSITVFPIGQ 129 (361)
T ss_dssp SCEEEEEECSSEEEEEET-T--------TTEEEEEEBCT
T ss_pred CCcEEEEECCCEEEEEEC-C--------CCEEEEEEeCC
Confidence 222223333334555432 1 24577888764
No 105
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=94.12 E-value=1.1 Score=46.06 Aligned_cols=149 Identities=11% Similarity=-0.028 Sum_probs=73.2
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcE
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv 211 (647)
++.+++.|+.. ..|.+||+.+.+-...-. ...... .++++. +..+++.||.+ ..+
T Consensus 150 dg~~l~sgs~d-----------g~v~iwd~~~~~~~~~~~--~h~~~v-~~v~~s~~~~~~~~s~~~d---------g~v 206 (357)
T 4g56_B 150 DGTQAVSGGKD-----------FSVKVWDLSQKAVLKSYN--AHSSEV-NCVAACPGKDTIFLSCGED---------GRI 206 (357)
T ss_dssp SSSEEEEEETT-----------SCEEEEETTTTEEEEEEC--CCSSCE-EEEEECTTCSSCEEEEETT---------SCE
T ss_pred CCCEEEEEeCC-----------CeEEEEECCCCcEEEEEc--CCCCCE-EEEEEccCCCceeeeeccC---------Cce
Confidence 45677777643 357889998876433221 111111 122222 23467777653 357
Q ss_pred EEEEcCCCceEEeccCCCCCCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeec
Q 006384 212 YVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (647)
Q Consensus 212 ~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~ 289 (647)
.+||+.+.+-....... .......+++.. ++.+++.|+.+.. +.+||+.+..-...-.
T Consensus 207 ~~wd~~~~~~~~~~~~~----~~~~~v~~v~~sp~~~~~la~g~~d~~----------------i~~wd~~~~~~~~~~~ 266 (357)
T 4g56_B 207 LLWDTRKPKPATRIDFC----ASDTIPTSVTWHPEKDDTFACGDETGN----------------VSLVNIKNPDSAQTSA 266 (357)
T ss_dssp EECCTTSSSCBCBCCCT----TCCSCEEEEEECTTSTTEEEEEESSSC----------------EEEEESSCGGGCEEEC
T ss_pred EEEECCCCceeeeeeec----cccccccchhhhhcccceEEEeecccc----------------eeEEECCCCcEeEEEe
Confidence 78888776533221110 111111222332 4567888876654 7788876543111110
Q ss_pred CCCCCCCceeeEEEEE-CC-eEEEecceeccccCccccccccCCcEEEEECCCCcE
Q 006384 290 IGMPPGPRAGFSMCVH-KK-RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (647)
Q Consensus 290 ~g~~P~~R~~~s~~~~-~~-~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (647)
+ . ...-.++++. ++ ++++.|+.+ ..|.+||+.+.+-
T Consensus 267 -~--~-~~~v~~l~~sp~~~~~lasgs~D--------------~~i~iwd~~~~~~ 304 (357)
T 4g56_B 267 -V--H-SQNITGLAYSYHSSPFLASISED--------------CTVAVLDADFSEV 304 (357)
T ss_dssp -C--C-SSCEEEEEECSSSSCCEEEEETT--------------SCEEEECTTSCEE
T ss_pred -c--c-ceeEEEEEEcCCCCCEEEEEeCC--------------CEEEEEECCCCcE
Confidence 0 1 1111223332 33 556666532 3488999887643
No 106
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=94.12 E-value=1.5 Score=44.96 Aligned_cols=152 Identities=11% Similarity=0.052 Sum_probs=75.3
Q ss_pred EEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE---CCEEEEEeCCcCCCCCc
Q 006384 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFTSPNQE 150 (647)
Q Consensus 74 ~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~---~~~iyv~GG~~~~~~~~ 150 (647)
+.+.| ++.+++.|+. + ..+.+||+.+.+-...-.. ....-..+.+ +..+++.|+..
T Consensus 133 v~~sp--dg~~l~sgs~--d-------~~i~iwd~~~~~~~~~~~~----h~~~V~~~~~~~~~~~~l~s~s~D------ 191 (344)
T 4gqb_B 133 VSVLS--SGTQAVSGSK--D-------ICIKVWDLAQQVVLSSYRA----HAAQVTCVAASPHKDSVFLSCSED------ 191 (344)
T ss_dssp EEECT--TSSEEEEEET--T-------SCEEEEETTTTEEEEEECC----CSSCEEEEEECSSCTTEEEEEETT------
T ss_pred EEECC--CCCEEEEEeC--C-------CeEEEEECCCCcEEEEEcC----cCCceEEEEecCCCCCceeeeccc------
Confidence 44444 4566666662 2 3578888887754332111 1111122233 33577777653
Q ss_pred cccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE---CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEE-ecc
Q 006384 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE-IKP 226 (647)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~---~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~-v~~ 226 (647)
..|.+||+.+.+-...-. .........++.+ ++++++.|+.+ ..|.+||+.+.+-.. +..
T Consensus 192 -----~~v~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~l~sg~~d---------g~v~~wd~~~~~~~~~~~~ 255 (344)
T 4gqb_B 192 -----NRILLWDTRCPKPASQIG--CSAPGYLPTSLAWHPQQSEVFVFGDEN---------GTVSLVDTKSTSCVLSSAV 255 (344)
T ss_dssp -----SCEEEEETTSSSCEEECC------CCCEEEEEECSSCTTEEEEEETT---------SEEEEEESCC--CCEEEEC
T ss_pred -----cccccccccccceeeeee--cceeeccceeeeecCCCCcceEEeccC---------CcEEEEECCCCcEEEEEcC
Confidence 357889998776433211 1111111222332 45677777753 357888887654211 111
Q ss_pred CCCCCCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEE
Q 006384 227 RFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS 285 (647)
Q Consensus 227 ~~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~ 285 (647)
. ...-.+++.. +..+++.|+.++. +.+||..+..-.
T Consensus 256 h-------~~~v~~v~fsp~g~~~lasgs~D~~----------------i~vwd~~~~~~~ 293 (344)
T 4gqb_B 256 H-------SQCVTGLVFSPHSVPFLASLSEDCS----------------LAVLDSSLSELF 293 (344)
T ss_dssp C-------SSCEEEEEECSSSSCCEEEEETTSC----------------EEEECTTCCEEE
T ss_pred C-------CCCEEEEEEccCCCeEEEEEeCCCe----------------EEEEECCCCcEE
Confidence 1 1111223332 3356677776654 778888776543
No 107
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=94.11 E-value=2.8 Score=43.95 Aligned_cols=171 Identities=13% Similarity=0.123 Sum_probs=88.6
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEc-ccCCCCCCc
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQL-NLKGCPSPR 180 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~-~~~~~P~~R 180 (647)
.+.+||+.+.+....-.. .......+.+.+.+++.|+.. ..+.+||+.+..-... .. .....
T Consensus 194 ~i~vwd~~~~~~~~~~~~----h~~~v~~l~~~~~~l~s~s~d-----------g~i~vwd~~~~~~~~~~~~--~~~~~ 256 (435)
T 1p22_A 194 TVRVWDVNTGEMLNTLIH----HCEAVLHLRFNNGMMVTCSKD-----------RSIAVWDMASPTDITLRRV--LVGHR 256 (435)
T ss_dssp CEEEEESSSCCEEEEECC----CCSCEEEEECCTTEEEEEETT-----------SCEEEEECSSSSCCEEEEE--ECCCS
T ss_pred eEEEEECCCCcEEEEEcC----CCCcEEEEEEcCCEEEEeeCC-----------CcEEEEeCCCCCCceeeeE--ecCCC
Confidence 678888887754432211 112223334455566777643 4578888876542211 11 01112
Q ss_pred ceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCC
Q 006384 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVST 260 (647)
Q Consensus 181 ~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~ 260 (647)
....++.+++.+++.|+.+ ..+.+||+.+.+-...-.. .. ....++..++.+++.|+.++.
T Consensus 257 ~~v~~~~~~~~~l~s~~~d---------g~i~vwd~~~~~~~~~~~~------~~-~~v~~~~~~~~~l~~g~~dg~--- 317 (435)
T 1p22_A 257 AAVNVVDFDDKYIVSASGD---------RTIKVWNTSTCEFVRTLNG------HK-RGIACLQYRDRLVVSGSSDNT--- 317 (435)
T ss_dssp SCEEEEEEETTEEEEEETT---------SEEEEEETTTCCEEEEEEC------CS-SCEEEEEEETTEEEEEETTSC---
T ss_pred CcEEEEEeCCCEEEEEeCC---------CeEEEEECCcCcEEEEEcC------CC-CcEEEEEeCCCEEEEEeCCCe---
Confidence 2223334466666666642 4688899887654322111 11 112233335667778877655
Q ss_pred cccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCC
Q 006384 261 DKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (647)
Q Consensus 261 ~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (647)
+.+||+.+..-...-. .......++..++..++.|+.+ ..|.+||+.+
T Consensus 318 -------------i~iwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~l~sg~~d--------------g~i~vwd~~~ 365 (435)
T 1p22_A 318 -------------IRLWDIECGACLRVLE-----GHEELVRCIRFDNKRIVSGAYD--------------GKIKVWDLVA 365 (435)
T ss_dssp -------------EEEEETTTCCEEEEEC-----CCSSCEEEEECCSSEEEEEETT--------------SCEEEEEHHH
T ss_pred -------------EEEEECCCCCEEEEEe-----CCcCcEEEEEecCCEEEEEeCC--------------CcEEEEECCC
Confidence 7888987654322211 1111223333477788887753 3588888643
No 108
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.08 E-value=1.5 Score=50.10 Aligned_cols=194 Identities=10% Similarity=-0.009 Sum_probs=96.3
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~ 149 (647)
.++...| ++.++++|+. + ..+.+||..+.+....-... . .....+.+ ++..+++|+..
T Consensus 59 ~~~~~s~--~~~~l~~~~~--d-------g~i~vw~~~~~~~~~~~~~~---~-~~v~~~~~s~~~~~l~~~~~d----- 118 (814)
T 3mkq_A 59 RAGKFIA--RKNWIIVGSD--D-------FRIRVFNYNTGEKVVDFEAH---P-DYIRSIAVHPTKPYVLSGSDD----- 118 (814)
T ss_dssp EEEEEEG--GGTEEEEEET--T-------SEEEEEETTTCCEEEEEECC---S-SCEEEEEECSSSSEEEEEETT-----
T ss_pred EEEEEeC--CCCEEEEEeC--C-------CeEEEEECCCCcEEEEEecC---C-CCEEEEEEeCCCCEEEEEcCC-----
Confidence 3445555 5666777762 2 36888998887665332211 1 11222333 35455566532
Q ss_pred ccccccCcEEEEECCCC-cEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEecc
Q 006384 150 ERFHHYKDFWMLDLKTN-QWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~-~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~ 226 (647)
..+.+||+.++ .....-. .. ...-.+++.. ++.+++.|+.. ..+.+||+.+..-.....
T Consensus 119 ------g~i~vw~~~~~~~~~~~~~--~~-~~~v~~~~~~p~~~~~l~~~~~d---------g~v~vwd~~~~~~~~~~~ 180 (814)
T 3mkq_A 119 ------LTVKLWNWENNWALEQTFE--GH-EHFVMCVAFNPKDPSTFASGCLD---------RTVKVWSLGQSTPNFTLT 180 (814)
T ss_dssp ------SEEEEEEGGGTSEEEEEEE--CC-SSCEEEEEEETTEEEEEEEEETT---------SEEEEEETTCSSCSEEEE
T ss_pred ------CEEEEEECCCCceEEEEEc--CC-CCcEEEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCcceeEEe
Confidence 35778888765 2222211 11 1111223333 35677777653 468888886654322221
Q ss_pred CCCCCCCCCceeeeEEEe---CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEE
Q 006384 227 RFGSMWPSPRSGFQFFVY---QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMC 303 (647)
Q Consensus 227 ~~~~~~P~~R~~~s~~~~---~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~ 303 (647)
. ........++.. ++.+++.|+.++. +.+||+.+..-...-.. .. ..-.+++
T Consensus 181 ~-----~~~~~v~~~~~~~~~~~~~l~~~~~dg~----------------i~~~d~~~~~~~~~~~~---~~-~~v~~~~ 235 (814)
T 3mkq_A 181 T-----GQERGVNYVDYYPLPDKPYMITASDDLT----------------IKIWDYQTKSCVATLEG---HM-SNVSFAV 235 (814)
T ss_dssp C-----CCTTCCCEEEECCSTTCCEEEEECTTSE----------------EEEEETTTTEEEEEEEC---CS-SCEEEEE
T ss_pred c-----CCCCCEEEEEEEECCCCCEEEEEeCCCE----------------EEEEECCCCcEEEEEcC---CC-CCEEEEE
Confidence 1 111112223332 5667777776544 78888876653332211 11 1112222
Q ss_pred EE-CCeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 304 VH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 304 ~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
+. ++.+++.|+.. ..|.+||+.+.+
T Consensus 236 ~~~~~~~l~~~~~d--------------g~v~vwd~~~~~ 261 (814)
T 3mkq_A 236 FHPTLPIIISGSED--------------GTLKIWNSSTYK 261 (814)
T ss_dssp ECSSSSEEEEEETT--------------SCEEEEETTTCS
T ss_pred EcCCCCEEEEEeCC--------------CeEEEEECCCCc
Confidence 32 45667777642 347777777654
No 109
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.06 E-value=1.3 Score=50.59 Aligned_cols=153 Identities=8% Similarity=0.003 Sum_probs=78.5
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCc
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~ 150 (647)
.++...| ++.++++|+. + +.+.+||..+......-... ...-.+++.. ++.++++|+..
T Consensus 17 ~~i~~sp--~~~~la~~~~--~-------g~v~iwd~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~d------ 76 (814)
T 3mkq_A 17 KGIDFHP--TEPWVLTTLY--S-------GRVEIWNYETQVEVRSIQVT---ETPVRAGKFIARKNWIIVGSDD------ 76 (814)
T ss_dssp EEEEECS--SSSEEEEEET--T-------SEEEEEETTTTEEEEEEECC---SSCEEEEEEEGGGTEEEEEETT------
T ss_pred EEEEECC--CCCEEEEEeC--C-------CEEEEEECCCCceEEEEecC---CCcEEEEEEeCCCCEEEEEeCC------
Confidence 3455555 5667777762 2 36888998887654322211 1111222222 45566666642
Q ss_pred cccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCC
Q 006384 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (647)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~ 229 (647)
..+.+||..++.....-. ...... .+++.. ++..++.|+.. ..+.+||+.+. |..+....
T Consensus 77 -----g~i~vw~~~~~~~~~~~~--~~~~~v-~~~~~s~~~~~l~~~~~d---------g~i~vw~~~~~-~~~~~~~~- 137 (814)
T 3mkq_A 77 -----FRIRVFNYNTGEKVVDFE--AHPDYI-RSIAVHPTKPYVLSGSDD---------LTVKLWNWENN-WALEQTFE- 137 (814)
T ss_dssp -----SEEEEEETTTCCEEEEEE--CCSSCE-EEEEECSSSSEEEEEETT---------SEEEEEEGGGT-SEEEEEEE-
T ss_pred -----CeEEEEECCCCcEEEEEe--cCCCCE-EEEEEeCCCCEEEEEcCC---------CEEEEEECCCC-ceEEEEEc-
Confidence 468899998887544322 111111 122222 45556666642 35788888765 22222210
Q ss_pred CCCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCC
Q 006384 230 SMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW 282 (647)
Q Consensus 230 ~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~ 282 (647)
.....-.+++.. ++.+++.|+.++. +.+||+.+.
T Consensus 138 ---~~~~~v~~~~~~p~~~~~l~~~~~dg~----------------v~vwd~~~~ 173 (814)
T 3mkq_A 138 ---GHEHFVMCVAFNPKDPSTFASGCLDRT----------------VKVWSLGQS 173 (814)
T ss_dssp ---CCSSCEEEEEEETTEEEEEEEEETTSE----------------EEEEETTCS
T ss_pred ---CCCCcEEEEEEEcCCCCEEEEEeCCCe----------------EEEEECCCC
Confidence 111112233333 4567777776554 778887543
No 110
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=94.05 E-value=0.66 Score=47.79 Aligned_cols=190 Identities=9% Similarity=0.026 Sum_probs=95.9
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE---CCEEEEEeCCcCCCCC
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~---~~~iyv~GG~~~~~~~ 149 (647)
++.+.| ++.+++.|+. + ..+.+||+.+.+-...-.. ....-.++.+ +..+++.||..
T Consensus 144 ~v~~sp--dg~~l~sgs~--d-------g~v~iwd~~~~~~~~~~~~----h~~~v~~v~~s~~~~~~~~s~~~d----- 203 (357)
T 4g56_B 144 TLSVFS--DGTQAVSGGK--D-------FSVKVWDLSQKAVLKSYNA----HSSEVNCVAACPGKDTIFLSCGED----- 203 (357)
T ss_dssp EEEECS--SSSEEEEEET--T-------SCEEEEETTTTEEEEEECC----CSSCEEEEEECTTCSSCEEEEETT-----
T ss_pred EEEECC--CCCEEEEEeC--C-------CeEEEEECCCCcEEEEEcC----CCCCEEEEEEccCCCceeeeeccC-----
Confidence 344555 5667777762 2 3578889988765433211 1111222333 33577777643
Q ss_pred ccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE---CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEecc
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~---~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~ 226 (647)
..|.+||+.+.+-..... .........++.+ ++.+++.|+.. ..+.+||+.+.+-...-.
T Consensus 204 ------g~v~~wd~~~~~~~~~~~--~~~~~~~v~~v~~sp~~~~~la~g~~d---------~~i~~wd~~~~~~~~~~~ 266 (357)
T 4g56_B 204 ------GRILLWDTRKPKPATRID--FCASDTIPTSVTWHPEKDDTFACGDET---------GNVSLVNIKNPDSAQTSA 266 (357)
T ss_dssp ------SCEEECCTTSSSCBCBCC--CTTCCSCEEEEEECTTSTTEEEEEESS---------SCEEEEESSCGGGCEEEC
T ss_pred ------CceEEEECCCCceeeeee--eccccccccchhhhhcccceEEEeecc---------cceeEEECCCCcEeEEEe
Confidence 347788887765322211 1111122223333 35677777643 457888987654322111
Q ss_pred CCCCCCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEE
Q 006384 227 RFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV 304 (647)
Q Consensus 227 ~~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~ 304 (647)
. ....-.+++.. +..+++.|+.++. +.+||+.+.+-... .+. . ..-.++++
T Consensus 267 ~------~~~~v~~l~~sp~~~~~lasgs~D~~----------------i~iwd~~~~~~~~~--~~H--~-~~V~~vaf 319 (357)
T 4g56_B 267 V------HSQNITGLAYSYHSSPFLASISEDCT----------------VAVLDADFSEVFRD--LSH--R-DFVTGVAW 319 (357)
T ss_dssp C------CSSCEEEEEECSSSSCCEEEEETTSC----------------EEEECTTSCEEEEE--CCC--S-SCEEEEEE
T ss_pred c------cceeEEEEEEcCCCCCEEEEEeCCCE----------------EEEEECCCCcEeEE--CCC--C-CCEEEEEE
Confidence 1 11111222322 3456677776654 77889887654433 211 1 11123333
Q ss_pred E--CCeEEEecceeccccCccccccccCCcEEEEECCC
Q 006384 305 H--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (647)
Q Consensus 305 ~--~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (647)
. ++.+++.||.+ ..|.+|++.+
T Consensus 320 sP~d~~~l~s~s~D--------------g~v~iW~~~~ 343 (357)
T 4g56_B 320 SPLDHSKFTTVGWD--------------HKVLHHHLPS 343 (357)
T ss_dssp CSSSTTEEEEEETT--------------SCEEEEECC-
T ss_pred eCCCCCEEEEEcCC--------------CeEEEEECCC
Confidence 2 56777877753 3478888654
No 111
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=94.01 E-value=4.8 Score=44.18 Aligned_cols=105 Identities=13% Similarity=0.159 Sum_probs=57.7
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEE-EecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKD 157 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~-~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~d 157 (647)
++.+|+.+.. .+.+.++|..+.+-. .+... ..-|.++.. +..||+.+.- +.
T Consensus 148 ~~~~~vs~~~---------d~~V~v~D~~t~~~~~~i~~g-----~~~~~v~~spdg~~l~v~~~d------------~~ 201 (543)
T 1nir_A 148 PNLFSVTLRD---------AGQIALVDGDSKKIVKVIDTG-----YAVHISRMSASGRYLLVIGRD------------AR 201 (543)
T ss_dssp GGEEEEEEGG---------GTEEEEEETTTCCEEEEEECS-----TTEEEEEECTTSCEEEEEETT------------SE
T ss_pred CCEEEEEEcC---------CCeEEEEECCCceEEEEEecC-----cccceEEECCCCCEEEEECCC------------Ce
Confidence 6788888762 246888999887654 33222 114544343 4567776531 46
Q ss_pred EEEEEC--CCCcEEEcccCCCCCCcceeEEEEE-----CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEE
Q 006384 158 FWMLDL--KTNQWEQLNLKGCPSPRSGHRMVLY-----KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE 223 (647)
Q Consensus 158 v~~yD~--~t~~W~~~~~~~~P~~R~~h~~~~~-----~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~ 223 (647)
|.+||+ .+.+-.. . .+....-+.+++. +++.++++.+. .+.+.+||..+.+-..
T Consensus 202 V~v~D~~~~t~~~~~--~--i~~g~~p~~va~sp~~~~dg~~l~v~~~~--------~~~v~v~D~~t~~~~~ 262 (543)
T 1nir_A 202 IDMIDLWAKEPTKVA--E--IKIGIEARSVESSKFKGYEDRYTIAGAYW--------PPQFAIMDGETLEPKQ 262 (543)
T ss_dssp EEEEETTSSSCEEEE--E--EECCSEEEEEEECCSTTCTTTEEEEEEEE--------SSEEEEEETTTCCEEE
T ss_pred EEEEECcCCCCcEEE--E--EecCCCcceEEeCCCcCCCCCEEEEEEcc--------CCeEEEEeccccccce
Confidence 899999 6654322 2 1222222233333 45444444432 3568888988766433
No 112
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=93.97 E-value=0.96 Score=45.08 Aligned_cols=103 Identities=12% Similarity=0.058 Sum_probs=47.8
Q ss_pred CEEEEEcCeecCCCcceeeCcEEEEECC-CCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcE
Q 006384 82 TELILYGGEFYNGNKTYVYGDLYRYDVE-KQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDF 158 (647)
Q Consensus 82 ~~lyv~GG~~~~g~~~~~~ndl~~yd~~-~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv 158 (647)
..||+.++. -+.+++|++. +.++..+.... ....-+.++.. +..||+.+... ..+
T Consensus 5 ~~l~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~-----------~~v 62 (343)
T 1ri6_A 5 QTVYIASPE---------SQQIHVWNLNHEGALTLTQVVD--VPGQVQPMVVSPDKRYLYVGVRPE-----------FRV 62 (343)
T ss_dssp EEEEEEEGG---------GTEEEEEEECTTSCEEEEEEEE--CSSCCCCEEECTTSSEEEEEETTT-----------TEE
T ss_pred EEEEEeCCC---------CCeEEEEEECCCCcEEEeeeEe--cCCCCceEEECCCCCEEEEeecCC-----------CeE
Confidence 556666441 2467778774 44454332211 11112222222 34566655421 346
Q ss_pred EEEECC--CCcEEEcccCCCCCCcceeEEEEE-CC-EEEEEecccCCCCceeeeCcEEEEEcC
Q 006384 159 WMLDLK--TNQWEQLNLKGCPSPRSGHRMVLY-KH-KIIVFGGFYDTLREVRYYNDLYVFDLD 217 (647)
Q Consensus 159 ~~yD~~--t~~W~~~~~~~~P~~R~~h~~~~~-~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~ 217 (647)
.+|++. +.++..+... +....-..+++. ++ .||+.+.. -+.+.+||+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~---------~~~i~~~d~~ 114 (343)
T 1ri6_A 63 LAYRIAPDDGALTFAAES--ALPGSLTHISTDHQGQFVFVGSYN---------AGNVSVTRLE 114 (343)
T ss_dssp EEEEECTTTCCEEEEEEE--ECSSCCSEEEECTTSSEEEEEETT---------TTEEEEEEEE
T ss_pred EEEEecCCCCceeecccc--ccCCCCcEEEEcCCCCEEEEEecC---------CCeEEEEECC
Confidence 666655 7777766442 111122223332 34 45555432 1357778773
No 113
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=93.94 E-value=1.7 Score=43.35 Aligned_cols=108 Identities=4% Similarity=-0.103 Sum_probs=60.6
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE---CCEEEEEeCCcCCCCCccccccCc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFTSPNQERFHHYKD 157 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~---~~~iyv~GG~~~~~~~~~~~~~~d 157 (647)
.+.+|+.++. -+.+.+||+.+.+........ .... .+.+ +..||+.+.. -..
T Consensus 9 ~~~~~v~~~~---------~~~v~~~d~~~~~~~~~~~~~----~~~~-~~~~s~dg~~l~~~~~~-----------~~~ 63 (331)
T 3u4y_A 9 SNFGIVVEQH---------LRRISFFSTDTLEILNQITLG----YDFV-DTAITSDCSNVVVTSDF-----------CQT 63 (331)
T ss_dssp CCEEEEEEGG---------GTEEEEEETTTCCEEEEEECC----CCEE-EEEECSSSCEEEEEEST-----------TCE
T ss_pred CCEEEEEecC---------CCeEEEEeCcccceeeeEEcc----CCcc-eEEEcCCCCEEEEEeCC-----------CCe
Confidence 5788888762 247899999998876543321 1112 3333 3457777652 147
Q ss_pred EEEEECCCCcE-E-EcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEe
Q 006384 158 FWMLDLKTNQW-E-QLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (647)
Q Consensus 158 v~~yD~~t~~W-~-~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (647)
+++||+.+... . .+.. ...+ .+++++. +.+|| .+...+ -...+++||+.+.+....
T Consensus 64 i~~~d~~~~~~~~~~~~~--~~~~--~~~~~~s~dg~~l~-~~~~~~------~~~~i~v~d~~~~~~~~~ 123 (331)
T 3u4y_A 64 LVQIETQLEPPKVVAIQE--GQSS--MADVDITPDDQFAV-TVTGLN------HPFNMQSYSFLKNKFIST 123 (331)
T ss_dssp EEEEECSSSSCEEEEEEE--CSSC--CCCEEECTTSSEEE-ECCCSS------SSCEEEEEETTTTEEEEE
T ss_pred EEEEECCCCceeEEeccc--CCCC--ccceEECCCCCEEE-EecCCC------CcccEEEEECCCCCeEEE
Confidence 99999988874 2 2222 1112 2213333 34566 332110 012799999988776544
No 114
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=93.93 E-value=1.3 Score=46.45 Aligned_cols=51 Identities=10% Similarity=-0.041 Sum_probs=27.2
Q ss_pred EEEEeCCCCeEEEeecCCCCCCCceeeEEEEE--CCeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 274 LWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 274 v~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~--~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
|.+||+.+..-...... .....+++.. ++.+++.+|..+ +.|.+||+.+.+
T Consensus 303 I~iwd~~t~~~~~~~~~-----~~~v~~~~~~~~~~~lv~~sg~~d-------------~~I~iwd~~~~~ 355 (420)
T 4gga_A 303 IRIWNVCSGACLSAVDA-----HSQVCSILWSPHYKELISGHGFAQ-------------NQLVIWKYPTMA 355 (420)
T ss_dssp EEEEETTTTEEEEEEEC-----SSCEEEEEEETTTTEEEEEECTTT-------------CCEEEEETTTCC
T ss_pred EEEEeCCccccceeecc-----ccceeeeeecCCCCeEEEEEecCC-------------CEEEEEECCCCc
Confidence 77888887765443321 1112233333 344555445432 569999987643
No 115
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=93.85 E-value=1.4 Score=46.48 Aligned_cols=186 Identities=9% Similarity=0.039 Sum_probs=97.6
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCC
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~ 178 (647)
..++.+|+....-+.+.... .....+.+ ++..+++++.... ...++++|+.+++...+.. .+
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~-----~~v~~~~~Spdg~~la~~s~~~~--------~~~i~~~d~~tg~~~~l~~--~~- 222 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSP-----QPLMSPAWSPDGSKLAYVTFESG--------RSALVIQTLANGAVRQVAS--FP- 222 (415)
T ss_dssp EEEEEEETTSCSCEEEEEES-----SCEEEEEECTTSSEEEEEECTTS--------SCEEEEEETTTCCEEEEEC--CS-
T ss_pred ceEEEEcCCCCCCEEEeCCC-----CcceeeEEcCCCCEEEEEEecCC--------CcEEEEEECCCCcEEEeec--CC-
Confidence 46778887765444443211 11122233 4555555553221 2579999999988776643 11
Q ss_pred CcceeEEEEE--CCE-EEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecc
Q 006384 179 PRSGHRMVLY--KHK-IIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGY 254 (647)
Q Consensus 179 ~R~~h~~~~~--~~~-lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~ 254 (647)
... .++.+ +++ |++.+...+ ...|+++|+.+.+...+... +. ....++.. ++..+++++.
T Consensus 223 -~~~-~~~~~spdg~~la~~~~~~g-------~~~i~~~d~~~~~~~~l~~~-----~~--~~~~~~~spdg~~l~~~s~ 286 (415)
T 2hqs_A 223 -RHN-GAPAFSPDGSKLAFALSKTG-------SLNLYVMDLASGQIRQVTDG-----RS--NNTEPTWFPDSQNLAFTSD 286 (415)
T ss_dssp -SCE-EEEEECTTSSEEEEEECTTS-------SCEEEEEETTTCCEEECCCC-----SS--CEEEEEECTTSSEEEEEEC
T ss_pred -Ccc-cCEEEcCCCCEEEEEEecCC-------CceEEEEECCCCCEEeCcCC-----CC--cccceEECCCCCEEEEEEC
Confidence 112 22333 444 554444322 24699999998877665433 11 11222222 4554445443
Q ss_pred cCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEecceeccccCccccccccCCcE
Q 006384 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNEL 333 (647)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl 333 (647)
... ...+|.+|+.+..-..+.. ......++++. +++.+++++... -...|
T Consensus 287 ~~g-------------~~~i~~~d~~~~~~~~l~~-----~~~~~~~~~~spdG~~l~~~~~~~-----------g~~~i 337 (415)
T 2hqs_A 287 QAG-------------RPQVYKVNINGGAPQRITW-----EGSQNQDADVSSDGKFMVMVSSNG-----------GQQHI 337 (415)
T ss_dssp TTS-------------SCEEEEEETTSSCCEECCC-----SSSEEEEEEECTTSSEEEEEEECS-----------SCEEE
T ss_pred CCC-------------CcEEEEEECCCCCEEEEec-----CCCcccCeEECCCCCEEEEEECcC-----------CceEE
Confidence 211 1358999988776444422 11222233332 566666665432 02469
Q ss_pred EEEECCCCcEEEeE
Q 006384 334 YGFQLDNHRWYPLE 347 (647)
Q Consensus 334 ~~yd~~t~~W~~l~ 347 (647)
+++|+.+.....+.
T Consensus 338 ~~~d~~~~~~~~l~ 351 (415)
T 2hqs_A 338 AKQDLATGGVQVLS 351 (415)
T ss_dssp EEEETTTCCEEECC
T ss_pred EEEECCCCCEEEec
Confidence 99999988876544
No 116
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=93.84 E-value=3 Score=46.59 Aligned_cols=121 Identities=10% Similarity=0.074 Sum_probs=65.8
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEEC-CCC--eEEEecCCCC---CCCcc---eeEEEE--ECCE----EEEEeCCcC
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDV-EKQ--EWKVISSPNS---PPPRS---AHQAVS--WKNY----LYIFGGEFT 145 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~-~~~--~W~~l~s~~~---P~~R~---~ha~v~--~~~~----iyv~GG~~~ 145 (647)
++.||+.+.. .+.|+++|. .+. .|+.-..... |.+++ ....++ .++. ||+...
T Consensus 62 ~g~vyv~~~~---------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~--- 129 (599)
T 1w6s_A 62 DGKMYIHTSF---------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL--- 129 (599)
T ss_dssp TTEEEEECST---------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT---
T ss_pred CCEEEEEeCC---------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC---
Confidence 7889987651 247899999 665 5886433210 00111 122344 4666 777532
Q ss_pred CCCCccccccCcEEEEECCCCc--EEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc--e
Q 006384 146 SPNQERFHHYKDFWMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--W 221 (647)
Q Consensus 146 ~~~~~~~~~~~dv~~yD~~t~~--W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W 221 (647)
-..++.+|..+++ |+.-.....+......+-++.++.||+-.+.... .....|+.||..+.+ |
T Consensus 130 ---------dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~----g~~g~v~A~D~~TG~~~W 196 (599)
T 1w6s_A 130 ---------DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAEL----GVRGYLTAYDVKTGEQVW 196 (599)
T ss_dssp ---------TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGG----TCCCEEEEEETTTCCEEE
T ss_pred ---------CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEeccccc----CCCCeEEEEECCCCcEEE
Confidence 1468999998875 8753221000001122335568888764321110 023578999998765 8
Q ss_pred EEecc
Q 006384 222 QEIKP 226 (647)
Q Consensus 222 ~~v~~ 226 (647)
+.-..
T Consensus 197 ~~~~~ 201 (599)
T 1w6s_A 197 RAYAT 201 (599)
T ss_dssp EEESS
T ss_pred EEcCC
Confidence 76543
No 117
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=93.79 E-value=2.8 Score=41.73 Aligned_cols=199 Identities=8% Similarity=0.014 Sum_probs=98.4
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeE--EEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCC
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW--KVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPN 148 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W--~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~ 148 (647)
.+++.|. +..||+.+.. .+.+++||+.+.+. ..+.... .++ ++++.. +..|| .+.....
T Consensus 44 ~~~~s~d-g~~l~~~~~~---------~~~i~~~d~~~~~~~~~~~~~~~--~~~--~~~~~s~dg~~l~-~~~~~~~-- 106 (331)
T 3u4y_A 44 DTAITSD-CSNVVVTSDF---------CQTLVQIETQLEPPKVVAIQEGQ--SSM--ADVDITPDDQFAV-TVTGLNH-- 106 (331)
T ss_dssp EEEECSS-SCEEEEEEST---------TCEEEEEECSSSSCEEEEEEECS--SCC--CCEEECTTSSEEE-ECCCSSS--
T ss_pred eEEEcCC-CCEEEEEeCC---------CCeEEEEECCCCceeEEecccCC--CCc--cceEECCCCCEEE-EecCCCC--
Confidence 5566552 3457776651 13789999988764 3333222 222 212332 45566 3322110
Q ss_pred CccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CC-EEEEEecccCCCCceeeeCc-EEEEEcCCCc-eEEe
Q 006384 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KH-KIIVFGGFYDTLREVRYYND-LYVFDLDQFK-WQEI 224 (647)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~-~lyv~GG~~~~~~~~~~~~d-v~~yD~~t~~-W~~v 224 (647)
...+++||+.+........ .....+.+++. ++ +||+.+.. .+. +++|++.... ....
T Consensus 107 ------~~~i~v~d~~~~~~~~~~~----~~~~~~~~~~spdg~~l~~~~~~---------~~~~i~~~~~~~~g~~~~~ 167 (331)
T 3u4y_A 107 ------PFNMQSYSFLKNKFISTIP----IPYDAVGIAISPNGNGLILIDRS---------SANTVRRFKIDADGVLFDT 167 (331)
T ss_dssp ------SCEEEEEETTTTEEEEEEE----CCTTEEEEEECTTSSCEEEEEET---------TTTEEEEEEECTTCCEEEE
T ss_pred ------cccEEEEECCCCCeEEEEE----CCCCccceEECCCCCEEEEEecC---------CCceEEEEEECCCCcEeec
Confidence 1379999999887654332 12222444443 33 57776543 134 6667655321 1111
Q ss_pred --ccCCCCCCCCCceeeeEEEe-CC-EEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeE----EEeecCCCCCCC
Q 006384 225 --KPRFGSMWPSPRSGFQFFVY-QD-EVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW----SKVKKIGMPPGP 296 (647)
Q Consensus 225 --~~~~~~~~P~~R~~~s~~~~-~~-~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W----~~v~~~g~~P~~ 296 (647)
... +....-..++.. ++ .||+.+.... .+.+||+.+.+. ..+.. +
T Consensus 168 ~~~~~-----~~~~~~~~~~~spdg~~l~v~~~~~~----------------~v~v~d~~~~~~~~~~~~~~~-~----- 220 (331)
T 3u4y_A 168 GQEFI-----SGGTRPFNITFTPDGNFAFVANLIGN----------------SIGILETQNPENITLLNAVGT-N----- 220 (331)
T ss_dssp EEEEE-----CSSSSEEEEEECTTSSEEEEEETTTT----------------EEEEEECSSTTSCEEEEEEEC-S-----
T ss_pred CCccc-----cCCCCccceEECCCCCEEEEEeCCCC----------------eEEEEECCCCcccceeeeccC-C-----
Confidence 111 111112333333 33 5777664432 388889876654 22221 1
Q ss_pred ceeeEEEEE-CCe-EEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 297 RAGFSMCVH-KKR-ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 297 R~~~s~~~~-~~~-iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
.....+++. +++ ||+.... .+.|++||+.+.+...+..
T Consensus 221 ~~~~~~~~spdg~~l~v~~~~--------------~~~i~~~d~~~~~~~~~~~ 260 (331)
T 3u4y_A 221 NLPGTIVVSRDGSTVYVLTES--------------TVDVFNFNQLSGTLSFVKS 260 (331)
T ss_dssp SCCCCEEECTTSSEEEEECSS--------------EEEEEEEETTTTEEEEEEE
T ss_pred CCCceEEECCCCCEEEEEEcC--------------CCEEEEEECCCCceeeecc
Confidence 111233343 444 6665432 2349999999887765554
No 118
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=93.75 E-value=2.2 Score=42.38 Aligned_cols=137 Identities=11% Similarity=-0.004 Sum_probs=65.2
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (647)
..+.+||+.+........ ...... .++++. ++.+++.|+.+ ..+.+||+.+.+-...-..
T Consensus 195 ~~i~i~d~~~~~~~~~~~--~h~~~v-~~~~~s~~~~~l~s~s~D---------g~i~iwd~~~~~~~~~~~~------- 255 (340)
T 4aow_A 195 KLVKVWNLANCKLKTNHI--GHTGYL-NTVTVSPDGSLCASGGKD---------GQAMLWDLNEGKHLYTLDG------- 255 (340)
T ss_dssp SCEEEEETTTTEEEEEEC--CCSSCE-EEEEECTTSSEEEEEETT---------CEEEEEETTTTEEEEEEEC-------
T ss_pred CEEEEEECCCCceeeEec--CCCCcE-EEEEECCCCCEEEEEeCC---------CeEEEEEeccCceeeeecC-------
Confidence 347788988776443321 111111 122222 56677777753 3577888876543222111
Q ss_pred CceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCC----cee-eEEEEE-CCe
Q 006384 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGP----RAG-FSMCVH-KKR 308 (647)
Q Consensus 235 ~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~----R~~-~s~~~~-~~~ 308 (647)
...-.+++...+..++.|+.++. +.+||+.+..-............ ... .++++. +++
T Consensus 256 ~~~v~~~~~~~~~~~~~~~~d~~----------------i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 319 (340)
T 4aow_A 256 GDIINALCFSPNRYWLCAATGPS----------------IKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQ 319 (340)
T ss_dssp SSCEEEEEECSSSSEEEEEETTE----------------EEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSS
T ss_pred CceEEeeecCCCCceeeccCCCE----------------EEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCC
Confidence 11122333334555666665433 67778766543322111000000 111 122232 567
Q ss_pred EEEecceeccccCccccccccCCcEEEEECCCC
Q 006384 309 ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (647)
Q Consensus 309 iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (647)
+++.||.+ ..|.+||+.++
T Consensus 320 ~l~sgs~D--------------g~v~iW~~~tG 338 (340)
T 4aow_A 320 TLFAGYTD--------------NLVRVWQVTIG 338 (340)
T ss_dssp EEEEEETT--------------SCEEEEEEEC-
T ss_pred EEEEEeCC--------------CEEEEEeCCCc
Confidence 77777643 34888888765
No 119
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=93.64 E-value=6.7 Score=39.51 Aligned_cols=133 Identities=11% Similarity=0.043 Sum_probs=67.5
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCC
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~ 179 (647)
.+..||+.+..-...-... ......+.+ ++.+++.|+.. ..+.+||+.+..-...-. ....
T Consensus 165 ~i~~wd~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~sg~~d-----------~~v~~wd~~~~~~~~~~~--~h~~ 227 (340)
T 1got_B 165 TCALWDIETGQQTTTFTGH----TGDVMSLSLAPDTRLFVSGACD-----------ASAKLWDVREGMCRQTFT--GHES 227 (340)
T ss_dssp CEEEEETTTTEEEEEECCC----SSCEEEEEECTTSSEEEEEETT-----------SCEEEEETTTCSEEEEEC--CCSS
T ss_pred cEEEEECCCCcEEEEEcCC----CCceEEEEECCCCCEEEEEeCC-----------CcEEEEECCCCeeEEEEc--CCcC
Confidence 5777888776544322111 111222233 46677777753 357888988765432211 1111
Q ss_pred cceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceee-eEEEe-CCEEEEEecccC
Q 006384 180 RSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGF-QFFVY-QDEVFLYGGYSK 256 (647)
Q Consensus 180 R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~-s~~~~-~~~Iyv~GG~~~ 256 (647)
.. .+++.. ++.+++.|+.+ ..+.+||+.+.+-...-.. +....+. +++.. ++.+++.|+.++
T Consensus 228 ~v-~~v~~~p~~~~l~s~s~d---------~~v~iwd~~~~~~~~~~~~-----~~~~~~v~~~~~s~~g~~l~~g~~d~ 292 (340)
T 1got_B 228 DI-NAICFFPNGNAFATGSDD---------ATCRLFDLRADQELMTYSH-----DNIICGITSVSFSKSGRLLLAGYDDF 292 (340)
T ss_dssp CE-EEEEECTTSSEEEEEETT---------SCEEEEETTTTEEEEEECC-----TTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred CE-EEEEEcCCCCEEEEEcCC---------CcEEEEECCCCcEEEEEcc-----CCcccceEEEEECCCCCEEEEECCCC
Confidence 11 122222 56677777753 3578889877643222111 1111112 22222 667777777655
Q ss_pred CCCCcccCCCCCceeeeEEEEeCCCC
Q 006384 257 EVSTDKNQSEKGIIHSDLWSLDPRTW 282 (647)
Q Consensus 257 ~~~~~~~~~~~~~~~~dv~~yd~~t~ 282 (647)
. +.+||..+.
T Consensus 293 ~----------------i~vwd~~~~ 302 (340)
T 1got_B 293 N----------------CNVWDALKA 302 (340)
T ss_dssp E----------------EEEEETTTC
T ss_pred e----------------EEEEEcccC
Confidence 4 778887654
No 120
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=93.53 E-value=2.3 Score=43.18 Aligned_cols=146 Identities=8% Similarity=0.215 Sum_probs=73.3
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCc
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQE 150 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~ 150 (647)
++...| ++.+++.|+. + ..+..|+..+..+..+.... ........+.+ ++.+++.|+..
T Consensus 66 ~~~~sp--~g~~l~s~s~--D-------~~v~iw~~~~~~~~~~~~~~--~h~~~v~~v~~sp~~~~l~s~s~D------ 126 (345)
T 3fm0_A 66 KVAWSP--CGNYLASASF--D-------ATTCIWKKNQDDFECVTTLE--GHENEVKSVAWAPSGNLLATCSRD------ 126 (345)
T ss_dssp EEEECT--TSSEEEEEET--T-------SCEEEEEECCC-EEEEEEEC--CCSSCEEEEEECTTSSEEEEEETT------
T ss_pred EEEECC--CCCEEEEEEC--C-------CcEEEEEccCCCeEEEEEcc--CCCCCceEEEEeCCCCEEEEEECC------
Confidence 445555 5667777772 2 25667777777665443211 11112223333 46677777643
Q ss_pred cccccCcEEEEECCCC-cEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccC
Q 006384 151 RFHHYKDFWMLDLKTN-QWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (647)
Q Consensus 151 ~~~~~~dv~~yD~~t~-~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (647)
..+.+||+.+. .+..+... .........+.+ ++.+++.|+.+ ..+.+||..+..|..+...
T Consensus 127 -----~~v~iwd~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~l~s~s~d---------~~i~~w~~~~~~~~~~~~~ 190 (345)
T 3fm0_A 127 -----KSVWVWEVDEEDEYECVSVL--NSHTQDVKHVVWHPSQELLASASYD---------DTVKLYREEEDDWVCCATL 190 (345)
T ss_dssp -----SCEEEEEECTTSCEEEEEEE--CCCCSCEEEEEECSSSSCEEEEETT---------SCEEEEEEETTEEEEEEEE
T ss_pred -----CeEEEEECCCCCCeEEEEEe--cCcCCCeEEEEECCCCCEEEEEeCC---------CcEEEEEecCCCEEEEEEe
Confidence 34777887654 23333221 111111122233 55677777753 3577888888887655443
Q ss_pred CCCCCCCCceeeeEEEe-CCEEEEEecccCC
Q 006384 228 FGSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (647)
Q Consensus 228 ~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~ 257 (647)
.. ....-.+++.. ++.+++.|+.++.
T Consensus 191 ~~----h~~~v~~l~~sp~g~~l~s~s~D~~ 217 (345)
T 3fm0_A 191 EG----HESTVWSLAFDPSGQRLASCSDDRT 217 (345)
T ss_dssp CC----CSSCEEEEEECTTSSEEEEEETTSC
T ss_pred cC----CCCceEEEEECCCCCEEEEEeCCCe
Confidence 11 11111223332 5667777776654
No 121
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=93.46 E-value=5.4 Score=39.13 Aligned_cols=123 Identities=10% Similarity=0.123 Sum_probs=60.6
Q ss_pred eEEEEeccCC-CEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEe-cCCCCCCC-cceeEEEEE-CCEEEEEeCCcCCC
Q 006384 72 CSLNINPLKE-TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVI-SSPNSPPP-RSAHQAVSW-KNYLYIFGGEFTSP 147 (647)
Q Consensus 72 ~s~~~~~~~~-~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l-~s~~~P~~-R~~ha~v~~-~~~iyv~GG~~~~~ 147 (647)
+++++.+ + +.|||.... +.+++||+. .+...+ .......+ ..-+.++.. ++.||+........
T Consensus 74 ~~i~~~~--~~g~l~v~~~~----------~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~ 140 (314)
T 1pjx_A 74 AGCQCDR--DANQLFVADMR----------LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVA 140 (314)
T ss_dssp EEEEECS--SSSEEEEEETT----------TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCT
T ss_pred ceEEEec--CCCcEEEEECC----------CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccc
Confidence 4455554 5 788886541 258899998 777665 32211111 112233333 57788875422100
Q ss_pred ----CCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-----CC-EEEEEecccCCCCceeeeCcEEEEEcC
Q 006384 148 ----NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-----KH-KIIVFGGFYDTLREVRYYNDLYVFDLD 217 (647)
Q Consensus 148 ----~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-----~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~ 217 (647)
..........+++||+. .+...+... ... .+..++. ++ .||+.... .+.+++||+.
T Consensus 141 ~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~-~~~---~~~i~~~~~~d~dg~~l~v~~~~---------~~~i~~~~~~ 206 (314)
T 1pjx_A 141 PADYTRSMQEKFGSIYCFTTD-GQMIQVDTA-FQF---PNGIAVRHMNDGRPYQLIVAETP---------TKKLWSYDIK 206 (314)
T ss_dssp TSCCCBTTSSSCEEEEEECTT-SCEEEEEEE-ESS---EEEEEEEECTTSCEEEEEEEETT---------TTEEEEEEEE
T ss_pred cccccccccCCCCeEEEECCC-CCEEEeccC-CCC---cceEEEecccCCCCCEEEEEECC---------CCeEEEEECC
Confidence 00000112569999987 665544321 111 1233333 23 56765432 2568888875
Q ss_pred -CCce
Q 006384 218 -QFKW 221 (647)
Q Consensus 218 -t~~W 221 (647)
+.++
T Consensus 207 ~~g~~ 211 (314)
T 1pjx_A 207 GPAKI 211 (314)
T ss_dssp ETTEE
T ss_pred CCCcc
Confidence 3433
No 122
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=93.46 E-value=3.1 Score=42.52 Aligned_cols=106 Identities=12% Similarity=-0.008 Sum_probs=54.8
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEE-E-CCEEEEEecccCCCCceeeeCcE
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVL-Y-KHKIIVFGGFYDTLREVRYYNDL 211 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~-~-~~~lyv~GG~~~~~~~~~~~~dv 211 (647)
++.+++.|+.. ..|.+||+.+++-...-. ....... ++++ . +..+++.|+.+ ..|
T Consensus 138 dg~~l~sgs~d-----------~~i~iwd~~~~~~~~~~~--~h~~~V~-~~~~~~~~~~~l~s~s~D---------~~v 194 (344)
T 4gqb_B 138 SGTQAVSGSKD-----------ICIKVWDLAQQVVLSSYR--AHAAQVT-CVAASPHKDSVFLSCSED---------NRI 194 (344)
T ss_dssp TSSEEEEEETT-----------SCEEEEETTTTEEEEEEC--CCSSCEE-EEEECSSCTTEEEEEETT---------SCE
T ss_pred CCCEEEEEeCC-----------CeEEEEECCCCcEEEEEc--CcCCceE-EEEecCCCCCceeeeccc---------ccc
Confidence 46677777643 358889998875332211 1111111 1222 2 33577777753 357
Q ss_pred EEEEcCCCceEEeccCCCCCCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCC
Q 006384 212 YVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW 282 (647)
Q Consensus 212 ~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~ 282 (647)
.+||+.+.+-...-... .......+++.. ++.+++.|+.++. +.+||+.+.
T Consensus 195 ~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~p~~~~~l~sg~~dg~----------------v~~wd~~~~ 247 (344)
T 4gqb_B 195 LLWDTRCPKPASQIGCS----APGYLPTSLAWHPQQSEVFVFGDENGT----------------VSLVDTKST 247 (344)
T ss_dssp EEEETTSSSCEEECC--------CCCEEEEEECSSCTTEEEEEETTSE----------------EEEEESCC-
T ss_pred ccccccccceeeeeecc----eeeccceeeeecCCCCcceEEeccCCc----------------EEEEECCCC
Confidence 88999877644322110 011111222222 5668888877654 778887654
No 123
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=93.42 E-value=6.1 Score=38.38 Aligned_cols=185 Identities=9% Similarity=0.044 Sum_probs=94.8
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCc
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~ 150 (647)
+.+++.+. ++.|||.+.. ..+.+++||+.......+.... ...-+.++.. ++.|||....
T Consensus 80 ~~i~~~~~-~g~l~v~~~~--------~~~~i~~~d~~g~~~~~~~~~~---~~~~~~i~~~~~g~l~v~~~~------- 140 (286)
T 1q7f_A 80 NRVAVVRN-SGDIIVTERS--------PTHQIQIYNQYGQFVRKFGATI---LQHPRGVTVDNKGRIIVVECK------- 140 (286)
T ss_dssp EEEEEETT-TTEEEEEECG--------GGCEEEEECTTSCEEEEECTTT---CSCEEEEEECTTSCEEEEETT-------
T ss_pred eEEEEEcC-CCeEEEEcCC--------CCCEEEEECCCCcEEEEecCcc---CCCceEEEEeCCCCEEEEECC-------
Confidence 44554222 5888887641 0246888996655544443321 1122333333 5678887542
Q ss_pred cccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCC
Q 006384 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (647)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~ 229 (647)
...+++||+.......+...+ ....-..+++- ++.||+.... .+.|++||+.......+...
T Consensus 141 ----~~~i~~~~~~g~~~~~~~~~~--~~~~p~~i~~~~~g~l~v~~~~---------~~~i~~~~~~g~~~~~~~~~-- 203 (286)
T 1q7f_A 141 ----VMRVIIFDQNGNVLHKFGCSK--HLEFPNGVVVNDKQEIFISDNR---------AHCVKVFNYEGQYLRQIGGE-- 203 (286)
T ss_dssp ----TTEEEEECTTSCEEEEEECTT--TCSSEEEEEECSSSEEEEEEGG---------GTEEEEEETTCCEEEEESCT--
T ss_pred ----CCEEEEEcCCCCEEEEeCCCC--ccCCcEEEEECCCCCEEEEECC---------CCEEEEEcCCCCEEEEEccC--
Confidence 246889998765544443211 11112223333 5788886543 35689999865544444321
Q ss_pred CCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CC
Q 006384 230 SMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KK 307 (647)
Q Consensus 230 ~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~ 307 (647)
+.. ..-.++++. ++.|||...... ..+.+|++....-..+.... +. ...+++++- ++
T Consensus 204 g~~---~~p~~i~~d~~G~l~v~~~~~~---------------~~i~~~~~~g~~~~~~~~~~--~~-~~~~~i~~~~~g 262 (286)
T 1q7f_A 204 GIT---NYPIGVGINSNGEILIADNHNN---------------FNLTIFTQDGQLISALESKV--KH-AQCFDVALMDDG 262 (286)
T ss_dssp TTS---CSEEEEEECTTCCEEEEECSSS---------------CEEEEECTTSCEEEEEEESS--CC-SCEEEEEEETTT
T ss_pred Ccc---CCCcEEEECCCCCEEEEeCCCC---------------EEEEEECCCCCEEEEEcccC--CC-CcceeEEECCCC
Confidence 100 111233343 667888765432 13788887665444443311 11 122344444 67
Q ss_pred eEEEec
Q 006384 308 RALLFG 313 (647)
Q Consensus 308 ~iyifG 313 (647)
++|+..
T Consensus 263 ~l~vs~ 268 (286)
T 1q7f_A 263 SVVLAS 268 (286)
T ss_dssp EEEEEE
T ss_pred cEEEEC
Confidence 888773
No 124
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=93.35 E-value=3.8 Score=41.79 Aligned_cols=136 Identities=14% Similarity=0.008 Sum_probs=71.5
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcceeEEEE-E--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVL-Y--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~-~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~ 232 (647)
..+.+||+.+.+....-. ....... ++.+ . ++.+++.|+.+ ..+.+||+.+.+....-..
T Consensus 176 ~~v~lwd~~~~~~~~~~~--~h~~~v~-~~~~~~~~~g~~l~sgs~D---------g~v~~wd~~~~~~~~~~~~----- 238 (354)
T 2pbi_B 176 GTCALWDVESGQLLQSFH--GHGADVL-CLDLAPSETGNTFVSGGCD---------KKAMVWDMRSGQCVQAFET----- 238 (354)
T ss_dssp SEEEEEETTTCCEEEEEE--CCSSCEE-EEEECCCSSCCEEEEEETT---------SCEEEEETTTCCEEEEECC-----
T ss_pred CcEEEEeCCCCeEEEEEc--CCCCCeE-EEEEEeCCCCCEEEEEeCC---------CeEEEEECCCCcEEEEecC-----
Confidence 457888988876433211 1111111 1112 1 34677777753 4688899988765433211
Q ss_pred CCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE--CCeE
Q 006384 233 PSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRA 309 (647)
Q Consensus 233 P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~--~~~i 309 (647)
....-.+++.. ++.+++.|+.++. +.+||+.+..-..+-.. ........++.+ ++.+
T Consensus 239 -h~~~v~~v~~~p~~~~l~s~s~D~~----------------v~lwd~~~~~~~~~~~~---~~~~~~~~~~~~s~~g~~ 298 (354)
T 2pbi_B 239 -HESDVNSVRYYPSGDAFASGSDDAT----------------CRLYDLRADREVAIYSK---ESIIFGASSVDFSLSGRL 298 (354)
T ss_dssp -CSSCEEEEEECTTSSEEEEEETTSC----------------EEEEETTTTEEEEEECC---TTCCSCEEEEEECTTSSE
T ss_pred -CCCCeEEEEEeCCCCEEEEEeCCCe----------------EEEEECCCCcEEEEEcC---CCcccceeEEEEeCCCCE
Confidence 11111223333 5677788887665 77888877643332211 112223333333 5667
Q ss_pred EEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 310 LLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 310 yifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
++.|+.. ..|.+||+.+..
T Consensus 299 l~~g~~d--------------~~i~vwd~~~~~ 317 (354)
T 2pbi_B 299 LFAGYND--------------YTINVWDVLKGS 317 (354)
T ss_dssp EEEEETT--------------SCEEEEETTTCS
T ss_pred EEEEECC--------------CcEEEEECCCCc
Confidence 7776532 458999986654
No 125
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=93.32 E-value=6.7 Score=44.31 Aligned_cols=150 Identities=12% Similarity=0.014 Sum_probs=81.2
Q ss_pred CcEEEEECCC------C--cEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCC---ceEEe
Q 006384 156 KDFWMLDLKT------N--QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF---KWQEI 224 (647)
Q Consensus 156 ~dv~~yD~~t------~--~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~---~W~~v 224 (647)
+.+|++|+.+ . .+..+... ...........++.||+.+.... ....|+.+|+.+. .|+.+
T Consensus 259 ~~l~~~d~~~~~~~~~~~~~~~~l~~~---~~~~~~~~s~dg~~l~~~s~~~~------~~~~l~~~d~~~~~~~~~~~l 329 (710)
T 2xdw_A 259 NRLWYCDLQQESNGITGILKWVKLIDN---FEGEYDYVTNEGTVFTFKTNRHS------PNYRLINIDFTDPEESKWKVL 329 (710)
T ss_dssp CEEEEEEGGGSSSSSCSSCCCEEEECS---SSSCEEEEEEETTEEEEEECTTC------TTCEEEEEETTSCCGGGCEEE
T ss_pred cEEEEEECcccccccCCccceEEeeCC---CCcEEEEEeccCCEEEEEECCCC------CCCEEEEEeCCCCCcccceec
Confidence 6899999876 4 57777542 11111222234678888865422 1357899998875 58887
Q ss_pred ccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCe-EEEeecCCCCCCCceeeEE
Q 006384 225 KPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE-WSKVKKIGMPPGPRAGFSM 302 (647)
Q Consensus 225 ~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~-W~~v~~~g~~P~~R~~~s~ 302 (647)
.+. .....-..++.. ++.|++...... ...++++++.+.. ...+.. | ...-.++
T Consensus 330 ~~~-----~~~~~~~~~~~~~~~~lv~~~~~~g--------------~~~l~~~~~~~g~~~~~l~~----~-~~~v~~~ 385 (710)
T 2xdw_A 330 VPE-----HEKDVLEWVACVRSNFLVLCYLHDV--------------KNTLQLHDLATGALLKIFPL----E-VGSVVGY 385 (710)
T ss_dssp ECC-----CSSCEEEEEEEETTTEEEEEEEETT--------------EEEEEEEETTTCCEEEEECC----C-SSEEEEE
T ss_pred cCC-----CCCCeEEEEEEEcCCEEEEEEEECC--------------EEEEEEEECCCCCEEEecCC----C-CceEEEE
Confidence 654 111122234445 677777665432 2458899985443 444431 2 1111111
Q ss_pred EEE-CCeEEEecceeccccCccccccccCCcEEEEECCCCc--EEEeEe
Q 006384 303 CVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR--WYPLEL 348 (647)
Q Consensus 303 ~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~--W~~l~~ 348 (647)
+.- ++..++|...+. ..-..+|.||+.+++ ++.+..
T Consensus 386 ~~s~d~~~l~~~~ss~----------~~P~~i~~~d~~tg~~~~~~l~~ 424 (710)
T 2xdw_A 386 SGQKKDTEIFYQFTSF----------LSPGIIYHCDLTKEELEPRVFRE 424 (710)
T ss_dssp ECCTTCSEEEEEEECS----------SCCCEEEEEETTSSSCCCEEEEE
T ss_pred ecCCCCCEEEEEEeCC----------CCCCEEEEEECCCCccceEEeee
Confidence 111 333333332211 124579999998877 666554
No 126
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=93.31 E-value=2.7 Score=40.15 Aligned_cols=149 Identities=15% Similarity=0.253 Sum_probs=79.8
Q ss_pred EEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEE--ccc--CCCCCCcceeEEEEE--CCEEEEEecccCCC
Q 006384 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQ--LNL--KGCPSPRSGHRMVLY--KHKIIVFGGFYDTL 202 (647)
Q Consensus 129 a~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~--~~~--~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~ 202 (647)
+++...+.+|+|=| +.+|+++.....+.. +.. .++|. ... ++... ++++|+|-|
T Consensus 28 Ai~~~~g~~y~Fkg-------------~~~wr~~~~~~~~~p~~I~~~wp~Lp~-~iD-Aa~~~~~~~~iyfFkG----- 87 (207)
T 1pex_A 28 AITSLRGETMIFKD-------------RFFWRLHPQQVDAELFLTKSFWPELPN-RID-AAYEHPSHDLIFIFRG----- 87 (207)
T ss_dssp EEEEETTEEEEEET-------------TEEEEECSSSSCCEEEEHHHHCTTSCS-SCC-EEEEETTTTEEEEEET-----
T ss_pred EEEeCCCcEEEEEC-------------CEEEEEeCCCcCCCceehhHhccCCCC-Ccc-EEEEeccCCcEEEEcc-----
Confidence 45557899999987 458888765544322 211 12342 222 33333 589999987
Q ss_pred CceeeeCcEEEEEcCCCce---EEeccCCCCCCCCCceeeeEE-Ee--CCEEEEEecccCCCCCcccCCCCCceeeeEEE
Q 006384 203 REVRYYNDLYVFDLDQFKW---QEIKPRFGSMWPSPRSGFQFF-VY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWS 276 (647)
Q Consensus 203 ~~~~~~~dv~~yD~~t~~W---~~v~~~~~~~~P~~R~~~s~~-~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~ 276 (647)
+.+|+|+-.+..- ..|... .+|..-..--++ .. ++++|+|-|. ..|+
T Consensus 88 ------~~~w~~~~~~~~~gyPk~I~~~---GlP~~~~~IDAA~~~~~~gk~yfFkG~------------------~ywr 140 (207)
T 1pex_A 88 ------RKFWALNGYDILEGYPKKISEL---GLPKEVKKISAAVHFEDTGKTLLFSGN------------------QVWR 140 (207)
T ss_dssp ------TEEEEESTTCCCTTCSEESTTT---TCCTTCCCCCEEEECTTTSEEEEEETT------------------EEEE
T ss_pred ------CEEEEEeCCeeccCCceecccc---CCCCCCccccEEEEeCCCCEEEEEeCC------------------EEEE
Confidence 3467776332111 122211 123211112222 23 5899999773 3789
Q ss_pred EeCCCCeEEE-----eec--CCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcE
Q 006384 277 LDPRTWEWSK-----VKK--IGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (647)
Q Consensus 277 yd~~t~~W~~-----v~~--~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (647)
||..+.+-.. +.. .| .|. .. .++...++.+|+|-| +..|+||..+++=
T Consensus 141 ~d~~~~~~d~gyPr~i~~~~~G-ip~-~i-DaAf~~~g~~YfFkg----------------~~y~rf~~~~~~v 195 (207)
T 1pex_A 141 YDDTNHIMDKDYPRLIEEDFPG-IGD-KV-DAVYEKNGYIYFFNG----------------PIQFEYSIWSNRI 195 (207)
T ss_dssp EETTTTEECSSCCCBHHHHSTT-SCS-CC-SEEEEETTEEEEEET----------------TEEEEEETTTTEE
T ss_pred EeCcCccccCCCCccHHHcCCC-CCC-Cc-cEEEEcCCcEEEEEC----------------CEEEEEeCCccEE
Confidence 9987653210 000 01 121 12 233346899999977 3489999877653
No 127
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=93.31 E-value=2.4 Score=43.90 Aligned_cols=66 Identities=9% Similarity=-0.094 Sum_probs=37.0
Q ss_pred EEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEE
Q 006384 136 YLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVF 214 (647)
Q Consensus 136 ~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~y 214 (647)
.+++.|+.. ..+.+||+.+......-..... ...-.+++.. ++.+++.|+.+ ..+.+|
T Consensus 145 ~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d---------~~i~iw 203 (402)
T 2aq5_A 145 NVLLSAGCD-----------NVILVWDVGTGAAVLTLGPDVH-PDTIYSVDWSRDGALICTSCRD---------KRVRVI 203 (402)
T ss_dssp TEEEEEETT-----------SCEEEEETTTTEEEEEECTTTC-CSCEEEEEECTTSSCEEEEETT---------SEEEEE
T ss_pred CEEEEEcCC-----------CEEEEEECCCCCccEEEecCCC-CCceEEEEECCCCCEEEEEecC---------CcEEEE
Confidence 477777643 4588999988765433210011 1111222222 56677777642 468899
Q ss_pred EcCCCceE
Q 006384 215 DLDQFKWQ 222 (647)
Q Consensus 215 D~~t~~W~ 222 (647)
|+.+.+-.
T Consensus 204 d~~~~~~~ 211 (402)
T 2aq5_A 204 EPRKGTVV 211 (402)
T ss_dssp ETTTTEEE
T ss_pred eCCCCcee
Confidence 99886543
No 128
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=93.29 E-value=7.5 Score=39.05 Aligned_cols=210 Identities=10% Similarity=0.056 Sum_probs=108.4
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCC--eEEEecCCCC----CCCc-ceeEEEEE--CCEEEEEeC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNS----PPPR-SAHQAVSW--KNYLYIFGG 142 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~--~W~~l~s~~~----P~~R-~~ha~v~~--~~~iyv~GG 142 (647)
+.+++.+ ++.|||.... .+.+++|++... .-..+..... +... .-..+++. ++.|||..+
T Consensus 94 ~gia~d~--~g~l~v~d~~---------~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~ 162 (329)
T 3fvz_A 94 HGLSIDT--DGNYWVTDVA---------LHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDG 162 (329)
T ss_dssp EEEEECT--TSCEEEEETT---------TTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEEC
T ss_pred eEEEECC--CCCEEEEECC---------CCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeC
Confidence 4556655 5668877651 246888888765 2223321100 0111 12233443 578999975
Q ss_pred CcCCCCCccccccCcEEEEECCCCcEEEcccCCC-----CCCcc-eeEEEEE-C-CEEEEEecccCCCCceeeeCcEEEE
Q 006384 143 EFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-----PSPRS-GHRMVLY-K-HKIIVFGGFYDTLREVRYYNDLYVF 214 (647)
Q Consensus 143 ~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~-----P~~R~-~h~~~~~-~-~~lyv~GG~~~~~~~~~~~~dv~~y 214 (647)
+. ...|++||+....-..+...+. +.... -+.+++- + +.|||.... .+.|.+|
T Consensus 163 ~~----------~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~---------~~~I~~~ 223 (329)
T 3fvz_A 163 YC----------NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE---------NGRIQCF 223 (329)
T ss_dssp SS----------CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT---------TTEEEEE
T ss_pred CC----------CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC---------CCEEEEE
Confidence 21 2568899965544444432111 11111 2334443 3 799997653 3578999
Q ss_pred EcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCC
Q 006384 215 DLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPP 294 (647)
Q Consensus 215 D~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P 294 (647)
|+.+.+....-..+ .....-.+++...+.+|+..|.... .......++++++.+.+....-..+ ..
T Consensus 224 ~~~~G~~~~~~~~~----~~~~~~~~~~~~pg~~~~~~g~~~v---------~~~~~~~v~~~~~~~g~~~~~~~~~-~~ 289 (329)
T 3fvz_A 224 KTDTKEFVREIKHA----SFGRNVFAISYIPGFLFAVNGKPYF---------GDQEPVQGFVMNFSSGEIIDVFKPV-RK 289 (329)
T ss_dssp ETTTCCEEEEECCT----TTTTCEEEEEEETTEEEEEECCCCT---------TCSCCCCEEEEETTTCCEEEEECCS-SS
T ss_pred ECCCCcEEEEEecc----ccCCCcceeeecCCEEEEeCCCEEe---------ccCCCcEEEEEEcCCCeEEEEEcCC-CC
Confidence 99877665433221 1112222344445778887775322 0122346889998777655542210 01
Q ss_pred CCceeeEEEEE-CCeEEEecceeccccCccccccccCCcEEEEECC
Q 006384 295 GPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD 339 (647)
Q Consensus 295 ~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~ 339 (647)
....-+++++- ++.|||.... .+.|++|++.
T Consensus 290 ~~~~p~~ia~~~dG~lyvad~~--------------~~~I~~~~~~ 321 (329)
T 3fvz_A 290 HFDMPHDIVASEDGTVYIGDAH--------------TNTVWKFTLT 321 (329)
T ss_dssp CCSSEEEEEECTTSEEEEEESS--------------SCCEEEEEEE
T ss_pred ccCCeeEEEECCCCCEEEEECC--------------CCEEEEEeCC
Confidence 11223344443 5678877543 3568888764
No 129
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=93.28 E-value=2.9 Score=39.92 Aligned_cols=148 Identities=16% Similarity=0.301 Sum_probs=79.6
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEE--EecC--CCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK--VISS--PNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHH 154 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~--~l~s--~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~ 154 (647)
++++|+|=|. .+|+++.....+. .+.. +.+| ..--++... ++.||+|-|
T Consensus 33 ~g~~y~Fkg~-----------~~wr~~~~~~~~~p~~I~~~wp~Lp--~~iDAa~~~~~~~~iyfFkG------------ 87 (207)
T 1pex_A 33 RGETMIFKDR-----------FFWRLHPQQVDAELFLTKSFWPELP--NRIDAAYEHPSHDLIFIFRG------------ 87 (207)
T ss_dssp TTEEEEEETT-----------EEEEECSSSSCCEEEEHHHHCTTSC--SSCCEEEEETTTTEEEEEET------------
T ss_pred CCcEEEEECC-----------EEEEEeCCCcCCCceehhHhccCCC--CCccEEEEeccCCcEEEEcc------------
Confidence 6889998883 5777776554332 2211 1233 222233334 589999988
Q ss_pred cCcEEEEECCCCc---EEEcccCCCCCCc-ceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceE-----E
Q 006384 155 YKDFWMLDLKTNQ---WEQLNLKGCPSPR-SGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ-----E 223 (647)
Q Consensus 155 ~~dv~~yD~~t~~---W~~~~~~~~P~~R-~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~-----~ 223 (647)
+.+|+|+..+.. =..+...++|..- .--+++.+ ++++|+|-| +..|+||..+.+-. .
T Consensus 88 -~~~w~~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG-----------~~ywr~d~~~~~~d~gyPr~ 155 (207)
T 1pex_A 88 -RKFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG-----------NQVWRYDDTNHIMDKDYPRL 155 (207)
T ss_dssp -TEEEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET-----------TEEEEEETTTTEECSSCCCB
T ss_pred -CEEEEEeCCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeC-----------CEEEEEeCcCccccCCCCcc
Confidence 467888643221 1234333445321 12233333 479999987 45789998654211 0
Q ss_pred eccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEE
Q 006384 224 IKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (647)
Q Consensus 224 v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (647)
+.....+ +|. . -.++...++.+|+|-|. ..|+||..+.+-..
T Consensus 156 i~~~~~G-ip~-~-iDaAf~~~g~~YfFkg~------------------~y~rf~~~~~~v~~ 197 (207)
T 1pex_A 156 IEEDFPG-IGD-K-VDAVYEKNGYIYFFNGP------------------IQFEYSIWSNRIVR 197 (207)
T ss_dssp HHHHSTT-SCS-C-CSEEEEETTEEEEEETT------------------EEEEEETTTTEEEE
T ss_pred HHHcCCC-CCC-C-ccEEEEcCCcEEEEECC------------------EEEEEeCCccEEec
Confidence 1000000 121 1 22333458999999774 27889887765443
No 130
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=93.25 E-value=5 Score=39.72 Aligned_cols=143 Identities=9% Similarity=0.042 Sum_probs=70.7
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEE-ecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKV-ISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~-l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~ 149 (647)
.++.+.| ++.+++.|+. + ..+..||..+..-.. +.... . .-.++... ++.+++.|+..
T Consensus 17 ~~~~fsp--~~~~l~s~~~--d-------g~v~lWd~~~~~~~~~~~~~~--~--~v~~~~~~~~~~~l~s~s~d----- 76 (304)
T 2ynn_A 17 KGIDFHP--TEPWVLTTLY--S-------GRVELWNYETQVEVRSIQVTE--T--PVRAGKFIARKNWIIVGSDD----- 76 (304)
T ss_dssp EEEEECS--SSSEEEEEET--T-------SEEEEEETTTTEEEEEEECCS--S--CEEEEEEEGGGTEEEEEETT-----
T ss_pred EEEEECC--CCCEEEEEcC--C-------CcEEEEECCCCceeEEeeccC--C--cEEEEEEeCCCCEEEEECCC-----
Confidence 3455566 6777777772 2 367888988775432 22111 1 11122222 45566666642
Q ss_pred ccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCC
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (647)
..+.+||+.+..-...-. + .. ..-.+++.. ++.+++.|+.+ ..+.+||+.+. +.......
T Consensus 77 ------~~i~vwd~~~~~~~~~~~-~-h~-~~v~~~~~~~~~~~l~sgs~D---------~~v~lWd~~~~-~~~~~~~~ 137 (304)
T 2ynn_A 77 ------FRIRVFNYNTGEKVVDFE-A-HP-DYIRSIAVHPTKPYVLSGSDD---------LTVKLWNWENN-WALEQTFE 137 (304)
T ss_dssp ------SEEEEEETTTCCEEEEEE-C-CS-SCEEEEEECSSSSEEEEEETT---------SCEEEEEGGGT-TEEEEEEC
T ss_pred ------CEEEEEECCCCcEEEEEe-C-CC-CcEEEEEEcCCCCEEEEECCC---------CeEEEEECCCC-cchhhhhc
Confidence 457888988775322111 1 11 111122222 45666677653 35778887664 22221110
Q ss_pred CCCCCCCceeeeEEEe--CCEEEEEecccCC
Q 006384 229 GSMWPSPRSGFQFFVY--QDEVFLYGGYSKE 257 (647)
Q Consensus 229 ~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~ 257 (647)
.....-.+++.. ++.+++.|+.++.
T Consensus 138 ----~h~~~v~~v~~~p~~~~~l~sgs~D~~ 164 (304)
T 2ynn_A 138 ----GHEHFVMCVAFNPKDPSTFASGCLDRT 164 (304)
T ss_dssp ----CCCSCEEEEEECTTCTTEEEEEETTSE
T ss_pred ----ccCCcEEEEEECCCCCCEEEEEeCCCe
Confidence 111112233333 4567888887655
No 131
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=93.24 E-value=7.3 Score=38.76 Aligned_cols=118 Identities=11% Similarity=0.045 Sum_probs=68.3
Q ss_pred CCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCc
Q 006384 66 PSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEF 144 (647)
Q Consensus 66 P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~ 144 (647)
|.+.....+++.+ ++.||+.--. .+.+++||+....-..+.. +..-+.++.. ++.|||.....
T Consensus 29 p~~~~pegia~~~--~g~lyv~d~~---------~~~I~~~d~~g~~~~~~~~-----~~~p~gia~~~dG~l~vad~~~ 92 (306)
T 2p4o_A 29 PVNTFLENLASAP--DGTIFVTNHE---------VGEIVSITPDGNQQIHATV-----EGKVSGLAFTSNGDLVATGWNA 92 (306)
T ss_dssp CTTCCEEEEEECT--TSCEEEEETT---------TTEEEEECTTCCEEEEEEC-----SSEEEEEEECTTSCEEEEEECT
T ss_pred CCCCCcceEEECC--CCCEEEEeCC---------CCeEEEECCCCceEEEEeC-----CCCceeEEEcCCCcEEEEeccC
Confidence 3345566677766 5678887531 1368999988753222222 1223444443 56788875321
Q ss_pred CCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCC
Q 006384 145 TSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (647)
Q Consensus 145 ~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (647)
. -..+++||+.+.+...+.. .+..+.....+.+ ++.+|+.--. ...+|++|+.+.
T Consensus 93 ~---------~~~v~~~d~~~g~~~~~~~--~~~~~~~~g~~~~~~~~~~v~d~~---------~g~i~~~d~~~~ 148 (306)
T 2p4o_A 93 D---------SIPVVSLVKSDGTVETLLT--LPDAIFLNGITPLSDTQYLTADSY---------RGAIWLIDVVQP 148 (306)
T ss_dssp T---------SCEEEEEECTTSCEEEEEE--CTTCSCEEEEEESSSSEEEEEETT---------TTEEEEEETTTT
T ss_pred C---------cceEEEEcCCCCeEEEEEe--CCCccccCcccccCCCcEEEEECC---------CCeEEEEeCCCC
Confidence 0 1248899998888876654 2444554555544 4567765321 247899998764
No 132
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=93.22 E-value=7.7 Score=43.39 Aligned_cols=158 Identities=9% Similarity=0.024 Sum_probs=79.0
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCC-----CcEEEcccCC
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT-----NQWEQLNLKG 175 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t-----~~W~~~~~~~ 175 (647)
..++++|+.+.+-..+.... . ........-+++.+++.. -..++++|+.+ +....+...+
T Consensus 101 ~~i~~~d~~~~~~~~l~~~~--~-~~~~~~~SpdG~~la~~~------------~~~i~v~~~~~~~~~~g~~~~~~~~~ 165 (706)
T 2z3z_A 101 GGLVGFDMLARKVTYLFDTN--E-ETASLDFSPVGDRVAYVR------------NHNLYIARGGKLGEGMSRAIAVTIDG 165 (706)
T ss_dssp TEEEEEETTTTEEEEEECCT--T-CCTTCEECTTSSEEEEEE------------TTEEEEEECBCTTSCCCCCEESCSCC
T ss_pred CEEEEEECCCCceEEccCCc--c-cccCCcCCCCCCEEEEEE------------CCeEEEEecCcccccCCCcEEeccCC
Confidence 47899999998877665431 1 111111111343333331 14688899887 7666654422
Q ss_pred CCCCcc-----------eeEEEE-ECCEEEEEecccCCCCc------------------------eeeeCcEEEEEcCCC
Q 006384 176 CPSPRS-----------GHRMVL-YKHKIIVFGGFYDTLRE------------------------VRYYNDLYVFDLDQF 219 (647)
Q Consensus 176 ~P~~R~-----------~h~~~~-~~~~lyv~GG~~~~~~~------------------------~~~~~dv~~yD~~t~ 219 (647)
...... .+..+. -+++.++++.+...... ......++++|+.+.
T Consensus 166 ~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~ 245 (706)
T 2z3z_A 166 TETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATG 245 (706)
T ss_dssp BTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTT
T ss_pred CCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCC
Confidence 110000 112222 25666666653221100 012357999999888
Q ss_pred ceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCC-eEEEee
Q 006384 220 KWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW-EWSKVK 288 (647)
Q Consensus 220 ~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~-~W~~v~ 288 (647)
+-..+.... .....-..++.. +++.++++..+.. .....++++|+.+. .+..+.
T Consensus 246 ~~~~~~~~~----~~~~~~~~~~~spdg~~l~~~~~~~~-----------~~~~~v~~~d~~~g~~~~~~~ 301 (706)
T 2z3z_A 246 KTVYLQTGE----PKEKFLTNLSWSPDENILYVAEVNRA-----------QNECKVNAYDAETGRFVRTLF 301 (706)
T ss_dssp EEEECCCCS----CTTCEEEEEEECTTSSEEEEEEECTT-----------SCEEEEEEEETTTCCEEEEEE
T ss_pred ceEeeccCC----CCceeEeeEEEECCCCEEEEEEeCCC-----------CCeeEEEEEECCCCceeeEEE
Confidence 765554320 111222223332 5554555444332 23457999999887 776664
No 133
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=93.12 E-value=8.8 Score=39.36 Aligned_cols=105 Identities=8% Similarity=0.052 Sum_probs=55.4
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~ 159 (647)
++.++++|+. + +.+..||+.+..-...-.. ....-.+++.. ++.+++.|+.. ..+.
T Consensus 108 ~~~~l~~~~~--d-------g~i~iwd~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~s~d-----------~~i~ 164 (420)
T 3vl1_A 108 QMRRFILGTT--E-------GDIKVLDSNFNLQREIDQA---HVSEITKLKFFPSGEALISSSQD-----------MQLK 164 (420)
T ss_dssp SSCEEEEEET--T-------SCEEEECTTSCEEEEETTS---SSSCEEEEEECTTSSEEEEEETT-----------SEEE
T ss_pred CCCEEEEEEC--C-------CCEEEEeCCCcceeeeccc---ccCccEEEEECCCCCEEEEEeCC-----------CeEE
Confidence 5667777762 2 3678889887765544221 11122222332 45566666642 4588
Q ss_pred EEECCCCcEEE-cccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCce
Q 006384 160 MLDLKTNQWEQ-LNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (647)
Q Consensus 160 ~yD~~t~~W~~-~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W 221 (647)
+||+.+..-.. +.. . ...-.+++.. ++.+++.|+.+ ..+.+||+.+.+-
T Consensus 165 iwd~~~~~~~~~~~~---h-~~~v~~~~~~~~~~~l~s~~~d---------~~v~iwd~~~~~~ 215 (420)
T 3vl1_A 165 IWSVKDGSNPRTLIG---H-RATVTDIAIIDRGRNVLSASLD---------GTIRLWECGTGTT 215 (420)
T ss_dssp EEETTTCCCCEEEEC---C-SSCEEEEEEETTTTEEEEEETT---------SCEEEEETTTTEE
T ss_pred EEeCCCCcCceEEcC---C-CCcEEEEEEcCCCCEEEEEcCC---------CcEEEeECCCCce
Confidence 89987654211 111 1 1111222222 55666677653 3578888877653
No 134
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=93.07 E-value=3.4 Score=42.21 Aligned_cols=133 Identities=14% Similarity=0.059 Sum_probs=68.3
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcceeEEEEE----CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCC
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW----KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCP 177 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~----~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P 177 (647)
.+..||+.+.+....-... . ....++.+ ++.+++.|+.. ..+.+||+.+.+....-. ..
T Consensus 177 ~v~lwd~~~~~~~~~~~~h--~--~~v~~~~~~~~~~g~~l~sgs~D-----------g~v~~wd~~~~~~~~~~~--~h 239 (354)
T 2pbi_B 177 TCALWDVESGQLLQSFHGH--G--ADVLCLDLAPSETGNTFVSGGCD-----------KKAMVWDMRSGQCVQAFE--TH 239 (354)
T ss_dssp EEEEEETTTCCEEEEEECC--S--SCEEEEEECCCSSCCEEEEEETT-----------SCEEEEETTTCCEEEEEC--CC
T ss_pred cEEEEeCCCCeEEEEEcCC--C--CCeEEEEEEeCCCCCEEEEEeCC-----------CeEEEEECCCCcEEEEec--CC
Confidence 5777888776543221111 0 11112222 24677777753 458889998876543321 11
Q ss_pred CCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe--CCEEEEEec
Q 006384 178 SPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGG 253 (647)
Q Consensus 178 ~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~GG 253 (647)
... -.++.+ ++.+++.|+.+ ..+.+||+.+..-..+-.. .....+...+.+ ++.+++.|+
T Consensus 240 ~~~--v~~v~~~p~~~~l~s~s~D---------~~v~lwd~~~~~~~~~~~~-----~~~~~~~~~~~~s~~g~~l~~g~ 303 (354)
T 2pbi_B 240 ESD--VNSVRYYPSGDAFASGSDD---------ATCRLYDLRADREVAIYSK-----ESIIFGASSVDFSLSGRLLFAGY 303 (354)
T ss_dssp SSC--EEEEEECTTSSEEEEEETT---------SCEEEEETTTTEEEEEECC-----TTCCSCEEEEEECTTSSEEEEEE
T ss_pred CCC--eEEEEEeCCCCEEEEEeCC---------CeEEEEECCCCcEEEEEcC-----CCcccceeEEEEeCCCCEEEEEE
Confidence 111 122333 56677777753 3578888877643322221 111122222222 567777777
Q ss_pred ccCCCCCcccCCCCCceeeeEEEEeCCCCe
Q 006384 254 YSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (647)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (647)
.++. +.+||+.+..
T Consensus 304 ~d~~----------------i~vwd~~~~~ 317 (354)
T 2pbi_B 304 NDYT----------------INVWDVLKGS 317 (354)
T ss_dssp TTSC----------------EEEEETTTCS
T ss_pred CCCc----------------EEEEECCCCc
Confidence 6554 7788876543
No 135
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=92.97 E-value=3.9 Score=46.66 Aligned_cols=110 Identities=11% Similarity=0.073 Sum_probs=65.1
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~ 159 (647)
++.|+|+||. .+-+++||+.+++++.+.....+......+++.. ++.||+-.. .-+.
T Consensus 482 ~g~lWi~~~t---------~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt~-------------~Gl~ 539 (758)
T 3ott_A 482 EGNVWVLLYN---------NKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGFH-------------GGVM 539 (758)
T ss_dssp TSCEEEEETT---------CSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEET-------------TEEE
T ss_pred CCCEEEEccC---------CCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEec-------------CceE
Confidence 5789887662 1358999999999998753221111122222222 477886431 3488
Q ss_pred EEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEe
Q 006384 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (647)
Q Consensus 160 ~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (647)
+||+.+..+......++|.. .-++++.-++.||+... +-+.+||+.+.+....
T Consensus 540 ~~~~~~~~~~~~~~~gl~~~-~i~~i~~~~g~lWi~t~-----------~Gl~~~~~~~~~~~~~ 592 (758)
T 3ott_A 540 RINPKDESQQSISFGSFSNN-EILSMTCVKNSIWVSTT-----------NGLWIIDRKTMDARQQ 592 (758)
T ss_dssp EECC--CCCCBCCCCC---C-CEEEEEEETTEEEEEES-----------SCEEEEETTTCCEEEC
T ss_pred EEecCCCceEEecccCCCcc-ceEEEEECCCCEEEECC-----------CCeEEEcCCCceeEEe
Confidence 99999888776643344432 23334445788887542 4589999998877654
No 136
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=92.95 E-value=4.4 Score=40.06 Aligned_cols=103 Identities=15% Similarity=0.064 Sum_probs=54.7
Q ss_pred CEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCC
Q 006384 190 HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKG 268 (647)
Q Consensus 190 ~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~ 268 (647)
+.+++.||.. ..+.+||+.+.+....-.. ....-.+++.. ++.+++.|+.++.
T Consensus 185 ~~~~~s~~~d---------~~i~i~d~~~~~~~~~~~~------h~~~v~~~~~s~~~~~l~s~s~Dg~----------- 238 (340)
T 4aow_A 185 NPIIVSCGWD---------KLVKVWNLANCKLKTNHIG------HTGYLNTVTVSPDGSLCASGGKDGQ----------- 238 (340)
T ss_dssp SCEEEEEETT---------SCEEEEETTTTEEEEEECC------CSSCEEEEEECTTSSEEEEEETTCE-----------
T ss_pred CcEEEEEcCC---------CEEEEEECCCCceeeEecC------CCCcEEEEEECCCCCEEEEEeCCCe-----------
Confidence 3455666642 3578888887654332211 11111223333 5677888877654
Q ss_pred ceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 269 IIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 269 ~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
+.+||+.+..-...... ...-.+++...+..++.|+.. +.|.+||+.+..
T Consensus 239 -----i~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~d--------------~~i~iwd~~~~~ 288 (340)
T 4aow_A 239 -----AMLWDLNEGKHLYTLDG-----GDIINALCFSPNRYWLCAATG--------------PSIKIWDLEGKI 288 (340)
T ss_dssp -----EEEEETTTTEEEEEEEC-----SSCEEEEEECSSSSEEEEEET--------------TEEEEEETTTTE
T ss_pred -----EEEEEeccCceeeeecC-----CceEEeeecCCCCceeeccCC--------------CEEEEEECCCCe
Confidence 77888876543332221 111223344445555666542 458889987654
No 137
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=92.93 E-value=4.3 Score=40.85 Aligned_cols=158 Identities=9% Similarity=0.115 Sum_probs=78.1
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCC--CcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeC
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT--NQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYN 209 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t--~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~ 209 (647)
++.+++.|+.. ..+.+||+.. ..+..+... ......-..+.+ ++.+++.|+.+ .
T Consensus 118 ~g~~las~s~D-----------~~v~iwd~~~~~~~~~~~~~~--~~h~~~v~~v~~~p~~~~l~s~s~D---------~ 175 (330)
T 2hes_X 118 DGYYLATCSRD-----------KSVWIWETDESGEEYECISVL--QEHSQDVKHVIWHPSEALLASSSYD---------D 175 (330)
T ss_dssp TSCEEEEEETT-----------SCEEEEECCTTCCCCEEEEEE--CCCSSCEEEEEECSSSSEEEEEETT---------S
T ss_pred CCCEEEEEeCC-----------CEEEEEeccCCCCCeEEEEEe--ccCCCceEEEEECCCCCEEEEEcCC---------C
Confidence 46666777643 3577888743 234433321 111111122333 55677777753 3
Q ss_pred cEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeC---CEEEEEecccCCCCCcccCCCCCceeeeEEEEeCC------
Q 006384 210 DLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQ---DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR------ 280 (647)
Q Consensus 210 dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~---~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~------ 280 (647)
.+.+||..+..|..+..... ....-.++.... +.+++.|+.++. +.+||+.
T Consensus 176 ~i~iW~~~~~~~~~~~~~~~----h~~~v~~~~~~~~~~~~~l~s~s~D~~----------------v~iw~~~~~~~~~ 235 (330)
T 2hes_X 176 TVRIWKDYDDDWECVAVLNG----HEGTVWSSDFDKTEGVFRLCSGSDDST----------------VRVWKYMGDDEDD 235 (330)
T ss_dssp CEEEEEEETTEEEEEEEECC----CSSCEEEEEECCSSSSCEEEEEETTSC----------------EEEEEEEEECTTS
T ss_pred eEEEEECCCCCeeEEEEccC----CCCcEEEEEecCCCCeeEEEEEeCCCe----------------EEEEEecCCCccc
Confidence 56777777776766554411 111112222222 345666776554 3344432
Q ss_pred CCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 281 TWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 281 t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
...|..+..... .....-.+++...+.+++.||.. ..|.+||+.+..|..+..
T Consensus 236 ~~~~~~~~~~~~-~h~~~v~~v~~s~~~~l~s~~~d--------------g~v~iw~~~~~~~~~~~~ 288 (330)
T 2hes_X 236 QQEWVCEAILPD-VHKRQVYNVAWGFNGLIASVGAD--------------GVLAVYEEVDGEWKVFAK 288 (330)
T ss_dssp CEEEEEEEECCS-CCSSCEEEEEECTTSCEEEEETT--------------SCEEEEEEETTEEEEEEE
T ss_pred cceeEEeeeccc-ccccceEEEEEcCCCEEEEEeCC--------------CEEEEEEcCCCceEEEec
Confidence 235655543211 01122233344455566666642 358889988888876543
No 138
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=92.88 E-value=4.4 Score=40.41 Aligned_cols=68 Identities=15% Similarity=0.145 Sum_probs=36.5
Q ss_pred CCEEEEEecccCCCCceeeeCcEEEEEcCC-CceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCC
Q 006384 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ-FKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSE 266 (647)
Q Consensus 189 ~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t-~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~ 266 (647)
++.+++.|+.. ..+.+||+.+ ..-...-.. ....-.+++.. ++.+++.|+.++.
T Consensus 186 ~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~d~~--------- 241 (369)
T 3zwl_B 186 KGKYIIAGHKD---------GKISKYDVSNNYEYVDSIDL------HEKSISDMQFSPDLTYFITSSRDTN--------- 241 (369)
T ss_dssp GGCEEEEEETT---------SEEEEEETTTTTEEEEEEEC------CSSCEEEEEECTTSSEEEEEETTSE---------
T ss_pred CCCEEEEEcCC---------CEEEEEECCCCcEeEEEEec------CCCceeEEEECCCCCEEEEecCCce---------
Confidence 45566666642 4688999887 332221111 11112223333 5666777765543
Q ss_pred CCceeeeEEEEeCCCCeEEEe
Q 006384 267 KGIIHSDLWSLDPRTWEWSKV 287 (647)
Q Consensus 267 ~~~~~~dv~~yd~~t~~W~~v 287 (647)
+.+||+.+......
T Consensus 242 -------i~v~d~~~~~~~~~ 255 (369)
T 3zwl_B 242 -------SFLVDVSTLQVLKK 255 (369)
T ss_dssp -------EEEEETTTCCEEEE
T ss_pred -------EEEEECCCCceeee
Confidence 78889877654443
No 139
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=92.85 E-value=13 Score=42.06 Aligned_cols=195 Identities=13% Similarity=0.099 Sum_probs=96.8
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCC---CccccccCcEEEEECCCCcE--EEcccC
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPN---QERFHHYKDFWMLDLKTNQW--EQLNLK 174 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~---~~~~~~~~dv~~yD~~t~~W--~~~~~~ 174 (647)
..++++|+.+++...... +...+..+.+ .++.++++....... .........||++++.+..- ..+..
T Consensus 189 ~~i~v~dl~tg~~~~~~~-----~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~- 262 (741)
T 1yr2_A 189 RTVKFVGVADGKPLADEL-----KWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFA- 262 (741)
T ss_dssp EEEEEEETTTCCEEEEEE-----EEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEEC-
T ss_pred EEEEEEECCCCCCCCccC-----CCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEec-
Confidence 369999999998765421 1111112222 223333333221100 00001235689999876642 12211
Q ss_pred CCCC-CcceeEEEE-ECCEEEEEecccCCCCceeeeCcEEEEEcCCC--c-eEEeccCCCCCCCCCceeeeEEEeCCEEE
Q 006384 175 GCPS-PRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--K-WQEIKPRFGSMWPSPRSGFQFFVYQDEVF 249 (647)
Q Consensus 175 ~~P~-~R~~h~~~~-~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~--~-W~~v~~~~~~~~P~~R~~~s~~~~~~~Iy 249 (647)
.+. +........ -+++.+++....... ..+.+|++|+.+. . |..+... ....... +...++.||
T Consensus 263 -~~~~~~~~~~~~~SpDG~~l~~~~~~~~~----~~~~l~~~d~~~~~~~~~~~l~~~-----~~~~~~~-~~~dg~~l~ 331 (741)
T 1yr2_A 263 -TPELPKRGHGASVSSDGRWVVITSSEGTD----PVNTVHVARVTNGKIGPVTALIPD-----LKAQWDF-VDGVGDQLW 331 (741)
T ss_dssp -CTTCTTCEEEEEECTTSCEEEEEEECTTC----SCCEEEEEEEETTEECCCEEEECS-----SSSCEEE-EEEETTEEE
T ss_pred -cCCCCeEEEEEEECCCCCEEEEEEEccCC----CcceEEEEECCCCCCcccEEecCC-----CCceEEE-EeccCCEEE
Confidence 111 222222222 245444443322110 2468999999877 7 8888654 1122222 234577788
Q ss_pred EEecccCCCCCcccCCCCCceeeeEEEEeCCC--CeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCcccccc
Q 006384 250 LYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT--WEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMS 327 (647)
Q Consensus 250 v~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t--~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~ 327 (647)
+...... ....++++|+.+ ..|..+-+. ....-..++..++.|++......
T Consensus 332 ~~s~~~~-------------~~~~l~~~d~~~~~~~~~~l~~~----~~~~l~~~~~~~~~lv~~~~~dg---------- 384 (741)
T 1yr2_A 332 FVSGDGA-------------PLKKIVRVDLSGSTPRFDTVVPE----SKDNLESVGIAGNRLFASYIHDA---------- 384 (741)
T ss_dssp EEECTTC-------------TTCEEEEEECSSSSCEEEEEECC----CSSEEEEEEEEBTEEEEEEEETT----------
T ss_pred EEECCCC-------------CCCEEEEEeCCCCccccEEEecC----CCCeEEEEEEECCEEEEEEEECC----------
Confidence 7754321 124588999887 579888642 11122233445777777665432
Q ss_pred ccCCcEEEEECCCC
Q 006384 328 LFLNELYGFQLDNH 341 (647)
Q Consensus 328 ~~~ndl~~yd~~t~ 341 (647)
...||++++...
T Consensus 385 --~~~l~~~~~~g~ 396 (741)
T 1yr2_A 385 --KSQVLAFDLDGK 396 (741)
T ss_dssp --EEEEEEEETTSC
T ss_pred --EEEEEEEeCCCC
Confidence 345888887543
No 140
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=92.84 E-value=9.8 Score=39.18 Aligned_cols=105 Identities=10% Similarity=0.033 Sum_probs=57.8
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEE
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLY 212 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~ 212 (647)
++.+++.|+.. ..+.+||+.+.+-...-. ... ..-.+++.. ++..++.|+.+ ..+.
T Consensus 134 dg~~l~s~~~d-----------~~i~iwd~~~~~~~~~~~--~h~-~~v~~~~~~p~~~~l~s~s~d---------~~v~ 190 (393)
T 1erj_A 134 DGKFLATGAED-----------RLIRIWDIENRKIVMILQ--GHE-QDIYSLDYFPSGDKLVSGSGD---------RTVR 190 (393)
T ss_dssp TSSEEEEEETT-----------SCEEEEETTTTEEEEEEC--CCS-SCEEEEEECTTSSEEEEEETT---------SEEE
T ss_pred CCCEEEEEcCC-----------CeEEEEECCCCcEEEEEc--cCC-CCEEEEEEcCCCCEEEEecCC---------CcEE
Confidence 46677777643 458889998876433221 111 111222222 45555666642 4678
Q ss_pred EEEcCCCceEEeccCCCCCCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeE
Q 006384 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW 284 (647)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W 284 (647)
+||+.+.+....-.. .. ...+++.. ++.+++.|+.++. +.+||+.+..-
T Consensus 191 iwd~~~~~~~~~~~~-----~~--~v~~~~~~~~~~~~l~~~s~d~~----------------v~iwd~~~~~~ 241 (393)
T 1erj_A 191 IWDLRTGQCSLTLSI-----ED--GVTTVAVSPGDGKYIAAGSLDRA----------------VRVWDSETGFL 241 (393)
T ss_dssp EEETTTTEEEEEEEC-----SS--CEEEEEECSTTCCEEEEEETTSC----------------EEEEETTTCCE
T ss_pred EEECCCCeeEEEEEc-----CC--CcEEEEEECCCCCEEEEEcCCCc----------------EEEEECCCCcE
Confidence 889888765433222 11 11223332 5678888887665 77888876543
No 141
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=92.74 E-value=2.7 Score=47.45 Aligned_cols=130 Identities=15% Similarity=0.227 Sum_probs=68.5
Q ss_pred CCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCC----------------c----ce
Q 006384 68 PRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPP----------------R----SA 127 (647)
Q Consensus 68 ~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~----------------R----~~ 127 (647)
++.-.++...| +++.+++++.. ++.. ....++.+|+.+.+...+.......+ | ..
T Consensus 36 ~~~~~~~~~Sp--dG~~la~~~~~-d~~~--~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (741)
T 2ecf_A 36 GPTLMKPKVAP--DGSRVTFLRGK-DSDR--NQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTG 110 (741)
T ss_dssp CCCCEEEEECT--TSSEEEEEECC-SSCT--TEEEEEEEETTTCCEEEEECGGGTC--------------------CCEE
T ss_pred CCCCCCceEec--CCCEEEEEecc-CCCC--cccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccC
Confidence 33444556666 66666666521 2211 13479999999998876654211010 0 11
Q ss_pred eEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCC---cEEEcccCCCCCCcceeEEEEECCEEEEEecccCCC
Q 006384 128 HQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN---QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTL 202 (647)
Q Consensus 128 ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~---~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~ 202 (647)
...+.+ +++.++++.. ..++++|+.++ .-..+.. ...........-+++.++++..
T Consensus 111 v~~~~~SpDg~~l~~~~~------------~~i~~~d~~~~~~~~~~~l~~---~~~~~~~~~~SPDG~~la~~~~---- 171 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLG------------GELYLYDLKQEGKAAVRQLTH---GEGFATDAKLSPKGGFVSFIRG---- 171 (741)
T ss_dssp SCCCEECTTSSEEEEEET------------TEEEEEESSSCSTTSCCBCCC---SSSCEEEEEECTTSSEEEEEET----
T ss_pred cceeEECCCCCEEEEEeC------------CcEEEEECCCCCcceEEEccc---CCcccccccCCCCCCEEEEEeC----
Confidence 122233 4555555432 47999999887 4433322 1111111122225665555531
Q ss_pred CceeeeCcEEEEEcCCCceEEeccC
Q 006384 203 REVRYYNDLYVFDLDQFKWQEIKPR 227 (647)
Q Consensus 203 ~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (647)
+.|+++|+.+.+...+...
T Consensus 172 ------~~i~~~d~~~g~~~~~~~~ 190 (741)
T 2ecf_A 172 ------RNLWVIDLASGRQMQLTAD 190 (741)
T ss_dssp ------TEEEEEETTTTEEEECCCC
T ss_pred ------CcEEEEecCCCCEEEeccC
Confidence 3699999998877766543
No 142
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=92.68 E-value=4.9 Score=44.48 Aligned_cols=106 Identities=12% Similarity=0.098 Sum_probs=61.0
Q ss_pred eCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CC-EEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEE
Q 006384 208 YNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QD-EVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS 285 (647)
Q Consensus 208 ~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~-~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~ 285 (647)
.+.++++|..+.....+... +.++.-|.+... ++ .+|+.... .+.+.++|+.+.+-.
T Consensus 319 ~g~v~~vd~~~~~~~~v~~i-----~~~~~~~d~~~~pdgr~~~va~~~----------------sn~V~ViD~~t~kl~ 377 (567)
T 1qks_A 319 TGKILLVDYTDLNNLKTTEI-----SAERFLHDGGLDGSHRYFITAANA----------------RNKLVVIDTKEGKLV 377 (567)
T ss_dssp TTEEEEEETTCSSEEEEEEE-----ECCSSEEEEEECTTSCEEEEEEGG----------------GTEEEEEETTTTEEE
T ss_pred CCeEEEEecCCCccceeeee-----eccccccCceECCCCCEEEEEeCC----------------CCeEEEEECCCCcEE
Confidence 36788888887665555544 445555555544 33 34443322 245889999988765
Q ss_pred EeecC-CCCCCCceeeEEEEE--CCeEEEecceeccccCccccccccCCcEEEEECCCCc-----EEEeEe
Q 006384 286 KVKKI-GMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR-----WYPLEL 348 (647)
Q Consensus 286 ~v~~~-g~~P~~R~~~s~~~~--~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~-----W~~l~~ 348 (647)
..-.. +..|.+..+... +. .+.+|+.+-.. .+.|-++|..+.. |+.+..
T Consensus 378 ~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g-------------~~~Vsvid~~~~~~~~~~~kvv~~ 434 (567)
T 1qks_A 378 AIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMG-------------DDSVALIGTDPEGHPDNAWKILDS 434 (567)
T ss_dssp EEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSS-------------SSEEEEEECCTTTCTTTBTSEEEE
T ss_pred EEEeccCcCCCCccceee-ECCCCCcEEEeCCCC-------------CCeEEEecCCCCCCccccCEEEEE
Confidence 54444 555655444432 34 35666654221 2458888877632 776654
No 143
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=92.66 E-value=7.1 Score=38.53 Aligned_cols=185 Identities=11% Similarity=0.059 Sum_probs=92.4
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCe--EEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKD 157 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~--W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~d 157 (647)
.+.+++.|.. -+.++.+|+.+.+ |+.-.. .....|.+... ++.||+.+. +.
T Consensus 4 ~~~~lv~~~~---------~~~v~~~d~~tG~~~w~~~~~----~~~~~~~~~~~pdG~ilvs~~-------------~~ 57 (276)
T 3no2_A 4 PQHLLVGGSG---------WNKIAIINKDTKEIVWEYPLE----KGWECNSVAATKAGEILFSYS-------------KG 57 (276)
T ss_dssp CCEEEEECTT---------CSEEEEEETTTTEEEEEEECC----TTCCCCEEEECTTSCEEEECB-------------SE
T ss_pred CCcEEEeeCC---------CCEEEEEECCCCeEEEEeCCC----ccCCCcCeEECCCCCEEEeCC-------------CC
Confidence 3677777762 2478899987764 664322 11122333333 677777321 45
Q ss_pred EEEEECCCC--cEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCC-ceEEeccCCCCCCC
Q 006384 158 FWMLDLKTN--QWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF-KWQEIKPRFGSMWP 233 (647)
Q Consensus 158 v~~yD~~t~--~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~-~W~~v~~~~~~~~P 233 (647)
|+.||+ ++ .|+.-. +.....+.+... ++.+++..... ...++.||+... .|+.-... ....+
T Consensus 58 V~~~d~-~G~~~W~~~~----~~~~~~~~~~~~~dG~~lv~~~~~--------~~~v~~vd~~Gk~l~~~~~~~-~~~~~ 123 (276)
T 3no2_A 58 AKMITR-DGRELWNIAA----PAGCEMQTARILPDGNALVAWCGH--------PSTILEVNMKGEVLSKTEFET-GIERP 123 (276)
T ss_dssp EEEECT-TSCEEEEEEC----CTTCEEEEEEECTTSCEEEEEEST--------TEEEEEECTTSCEEEEEEECC-SCSSG
T ss_pred EEEECC-CCCEEEEEcC----CCCccccccEECCCCCEEEEecCC--------CCEEEEEeCCCCEEEEEeccC-CCCcc
Confidence 888998 44 365332 211222333333 55665553310 135778887543 24432111 00001
Q ss_pred CCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCC-CeEEEeecCCCCCCCceeeEEEEE-CCeEEE
Q 006384 234 SPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT-WEWSKVKKIGMPPGPRAGFSMCVH-KKRALL 311 (647)
Q Consensus 234 ~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t-~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyi 311 (647)
...........++.+++...... .+.+||+.. ..|+.-.. ..| +++++. ++.+||
T Consensus 124 ~~~~~~v~~~~~G~~lv~~~~~~----------------~v~~~d~~G~~~w~~~~~--~~~-----~~~~~~~~g~~~v 180 (276)
T 3no2_A 124 HAQFRQINKNKKGNYLVPLFATS----------------EVREIAPNGQLLNSVKLS--GTP-----FSSAFLDNGDCLV 180 (276)
T ss_dssp GGSCSCCEECTTSCEEEEETTTT----------------EEEEECTTSCEEEEEECS--SCC-----CEEEECTTSCEEE
T ss_pred cccccCceECCCCCEEEEecCCC----------------EEEEECCCCCEEEEEECC--CCc-----cceeEcCCCCEEE
Confidence 11111112223556665544322 378898863 35665432 111 234444 677887
Q ss_pred ecceeccccCccccccccCCcEEEEECCCCc
Q 006384 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 312 fGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
++... +.|+.||+.+.+
T Consensus 181 ~~~~~--------------~~v~~~d~~tG~ 197 (276)
T 3no2_A 181 ACGDA--------------HCFVQLNLESNR 197 (276)
T ss_dssp ECBTT--------------SEEEEECTTTCC
T ss_pred EeCCC--------------CeEEEEeCcCCc
Confidence 76531 359999999765
No 144
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=92.34 E-value=6.2 Score=41.11 Aligned_cols=65 Identities=14% Similarity=0.006 Sum_probs=35.6
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcE
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv 211 (647)
++..++.|+.. ..+.+||+.+......-. .. .....++.+ ++.+++.|+.+ ..+
T Consensus 203 ~~~~l~s~s~D-----------~~i~~wd~~~~~~~~~~~--~h--~~~v~~~~~~~~g~~l~s~s~D---------~~v 258 (410)
T 1vyh_C 203 NGDHIVSASRD-----------KTIKMWEVQTGYCVKTFT--GH--REWVRMVRPNQDGTLIASCSND---------QTV 258 (410)
T ss_dssp SSSEEEEEETT-----------SEEEEEETTTCCEEEEEE--CC--SSCEEEEEECTTSSEEEEEETT---------SCE
T ss_pred CCCEEEEEeCC-----------CeEEEEECCCCcEEEEEe--CC--CccEEEEEECCCCCEEEEEcCC---------CeE
Confidence 45566666642 458889998776432211 11 111122222 56677777753 357
Q ss_pred EEEEcCCCceE
Q 006384 212 YVFDLDQFKWQ 222 (647)
Q Consensus 212 ~~yD~~t~~W~ 222 (647)
.+||+.+....
T Consensus 259 ~vwd~~~~~~~ 269 (410)
T 1vyh_C 259 RVWVVATKECK 269 (410)
T ss_dssp EEEETTTCCEE
T ss_pred EEEECCCCcee
Confidence 77887766543
No 145
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=92.33 E-value=11 Score=38.55 Aligned_cols=185 Identities=12% Similarity=0.049 Sum_probs=87.4
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcc-eeEEEEE---CCEEEEEeCCcCCCCCccccccCcEEEEECCCCc--EEEcccCC
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRS-AHQAVSW---KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKG 175 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~-~ha~v~~---~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~--W~~~~~~~ 175 (647)
.+..||+.+..-...-....|.... ....+.+ ++.+++.|+.. ..+.+||+.... -..+..
T Consensus 181 ~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D-----------~~v~~wd~~~~~~~~~~~~~-- 247 (380)
T 3iz6_a 181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD-----------TTVRLWDLRITSRAVRTYHG-- 247 (380)
T ss_dssp CEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETT-----------SCEEEEETTTTCCCCEEECC--
T ss_pred cEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECC-----------CeEEEEECCCCCcceEEECC--
Confidence 5778888877654332211111111 1122222 46788888754 357788876321 111111
Q ss_pred CCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCc-eeeeEEEe-CCEEEEEe
Q 006384 176 CPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPR-SGFQFFVY-QDEVFLYG 252 (647)
Q Consensus 176 ~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R-~~~s~~~~-~~~Iyv~G 252 (647)
...... +++.. ++.+++.|+.+ ..+.+||+.+..-...-........... .-.+++.. ++.+++.|
T Consensus 248 -h~~~v~-~v~~~p~~~~l~s~s~D---------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g 316 (380)
T 3iz6_a 248 -HEGDIN-SVKFFPDGQRFGTGSDD---------GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAG 316 (380)
T ss_dssp -CSSCCC-EEEECTTSSEEEEECSS---------SCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEE
T ss_pred -cCCCeE-EEEEecCCCeEEEEcCC---------CeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEE
Confidence 111111 22222 56677777753 3588899887654333222100000001 11222222 66777777
Q ss_pred cccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEe-ecCCCCCCCceeeEEEEE-CCeEEEecceeccccCccccccccC
Q 006384 253 GYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV-KKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFL 330 (647)
Q Consensus 253 G~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v-~~~g~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ 330 (647)
+.++. +.+||+.+..-... .........+. .++++. ++.+++.|+.+
T Consensus 317 ~~dg~----------------i~vwd~~~~~~~~~~~~~~~~h~~~v-~~l~~s~dg~~l~sgs~D-------------- 365 (380)
T 3iz6_a 317 YSNGD----------------CYVWDTLLAEMVLNLGTLQNSHEGRI-SCLGLSSDGSALCTGSWD-------------- 365 (380)
T ss_dssp CTTSC----------------EEEEETTTCCEEEEECCSCSSCCCCC-CEEEECSSSSEEEEECTT--------------
T ss_pred ECCCC----------------EEEEECCCCceEEEEecccCCCCCce-EEEEECCCCCEEEEeeCC--------------
Confidence 76554 78888766543322 11100011111 122222 67777888753
Q ss_pred CcEEEEECCCC
Q 006384 331 NELYGFQLDNH 341 (647)
Q Consensus 331 ndl~~yd~~t~ 341 (647)
..|.+|++...
T Consensus 366 ~~i~iW~~~~~ 376 (380)
T 3iz6_a 366 KNLKIWAFSGH 376 (380)
T ss_dssp SCEEEEECCSS
T ss_pred CCEEEEecCCC
Confidence 34777776543
No 146
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=92.24 E-value=7.7 Score=37.80 Aligned_cols=112 Identities=16% Similarity=0.179 Sum_probs=53.3
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccc
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERF 152 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~ 152 (647)
++...| ++.+++.|+. + ..+..||+.+.+-....... .. ........+.+++.|+..
T Consensus 72 ~v~~~~--~~~~l~sgs~--D-------g~v~iw~~~~~~~~~~~~~h--~~--~~~~~~~~~~~l~s~~~~-------- 128 (318)
T 4ggc_A 72 SVAWIK--EGNYLAVGTS--S-------AEVQLWDVQQQKRLRNMTSH--SA--RVGSLSWNSYILSSGSRS-------- 128 (318)
T ss_dssp EEEECT--TSSEEEEEET--T-------SEEEEEETTTTEEEEEEECC--SS--CEEEEEEETTEEEEEETT--------
T ss_pred EEEECC--CCCEEEEEEC--C-------CcEEEeecCCceeEEEecCc--cc--eEEEeecCCCEEEEEecC--------
Confidence 344454 5667777772 2 35778888887644332211 11 122333345555665532
Q ss_pred cccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc
Q 006384 153 HHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (647)
Q Consensus 153 ~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (647)
..+..++..+.........+ .............+.+++.|+.+ ..+.+||+.+.+
T Consensus 129 ---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~s~~~d---------~~i~iwd~~~~~ 183 (318)
T 4ggc_A 129 ---GHIHHHDVRVAEHHVATLSG-HSQEVCGLRWAPDGRHLASGGND---------NLVNVWPSAPGE 183 (318)
T ss_dssp ---SEEEEEETTSSSCEEEEEEC-CSSCEEEEEECTTSSEEEEEETT---------SCEEEEESSCBT
T ss_pred ---CceEeeecCCCceeEEEEcC-ccCceEEEEEcCCCCEEEEEecC---------cceeEEECCCCc
Confidence 33455555544332222111 11122222222355566666643 357788887643
No 147
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=92.19 E-value=13 Score=38.91 Aligned_cols=133 Identities=8% Similarity=0.086 Sum_probs=71.3
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (647)
..+.+||+.+..-...-. ...... .+++.. ++..++.|+.+ ..+.+||+.+.+-...-..
T Consensus 290 ~~i~vwd~~~~~~~~~~~--~~~~~v-~~~~~~~~~~~l~sg~~d---------g~i~vwd~~~~~~~~~~~~------- 350 (464)
T 3v7d_B 290 NTLIVWDVAQMKCLYILS--GHTDRI-YSTIYDHERKRCISASMD---------TTIRIWDLENGELMYTLQG------- 350 (464)
T ss_dssp SCEEEEETTTTEEEEEEC--CCSSCE-EEEEEETTTTEEEEEETT---------SCEEEEETTTTEEEEEECC-------
T ss_pred CeEEEEECCCCcEEEEec--CCCCCE-EEEEEcCCCCEEEEEeCC---------CcEEEEECCCCcEEEEEeC-------
Confidence 458889998765433221 111122 222222 45566666643 4588999887653322111
Q ss_pred CceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecc
Q 006384 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314 (647)
Q Consensus 235 ~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG 314 (647)
.......+.+.+..++.|+.++. +.+||+.+..-..... ........+...++.+++.|+
T Consensus 351 h~~~v~~~~~~~~~l~s~s~dg~----------------v~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~ 410 (464)
T 3v7d_B 351 HTALVGLLRLSDKFLVSAAADGS----------------IRGWDANDYSRKFSYH----HTNLSAITTFYVSDNILVSGS 410 (464)
T ss_dssp CSSCEEEEEECSSEEEEEETTSE----------------EEEEETTTCCEEEEEE----CTTCCCEEEEEECSSEEEEEE
T ss_pred CCCcEEEEEEcCCEEEEEeCCCc----------------EEEEECCCCceeeeec----CCCCccEEEEEeCCCEEEEec
Confidence 11112233445677777777654 7788887654222211 111223334445777777765
Q ss_pred eeccccCccccccccCCcEEEEECCCCc
Q 006384 315 VVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 315 ~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
+ +.|.+||+.+.+
T Consensus 411 --d-------------g~i~iwd~~~g~ 423 (464)
T 3v7d_B 411 --E-------------NQFNIYNLRSGK 423 (464)
T ss_dssp --T-------------TEEEEEETTTCC
T ss_pred --C-------------CeEEEEECCCCc
Confidence 2 359999998765
No 148
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=92.10 E-value=11 Score=38.11 Aligned_cols=69 Identities=10% Similarity=0.001 Sum_probs=36.3
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCC---cceeEEEEE--CCEEEEEecccCCCCceeee
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP---RSGHRMVLY--KHKIIVFGGFYDTLREVRYY 208 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~---R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~ 208 (647)
++ +++.|+.. ..+.+||+.+......-.. .+.. ...-.++.+ ++.+++.|+... ..
T Consensus 197 ~~-~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~-~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~------~~ 257 (397)
T 1sq9_A 197 RG-LIATGFNN-----------GTVQISELSTLRPLYNFES-QHSMINNSNSIRSVKFSPQGSLLAIAHDSN------SF 257 (397)
T ss_dssp TS-EEEEECTT-----------SEEEEEETTTTEEEEEEEC-CC---CCCCCEEEEEECSSTTEEEEEEEET------TE
T ss_pred Cc-eEEEEeCC-----------CcEEEEECCCCceeEEEec-cccccccCCccceEEECCCCCEEEEEecCC------CC
Confidence 45 66776642 4688999987754332220 0001 111222333 566677776431 02
Q ss_pred CcEEEEEcCCCce
Q 006384 209 NDLYVFDLDQFKW 221 (647)
Q Consensus 209 ~dv~~yD~~t~~W 221 (647)
..+.+||+.+.+-
T Consensus 258 g~i~i~d~~~~~~ 270 (397)
T 1sq9_A 258 GCITLYETEFGER 270 (397)
T ss_dssp EEEEEEETTTCCE
T ss_pred ceEEEEECCCCcc
Confidence 4688999887653
No 149
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=91.98 E-value=7.4 Score=38.50 Aligned_cols=110 Identities=15% Similarity=0.133 Sum_probs=57.2
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCe----EEEecCCCCCCCcceeEEEEE-CCE-EEEEeCCcC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQE----WKVISSPNSPPPRSAHQAVSW-KNY-LYIFGGEFT 145 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~----W~~l~s~~~P~~R~~ha~v~~-~~~-iyv~GG~~~ 145 (647)
.++.+.| ++.+++.|+. + +.+.+|++.+.. ...+.. ....-.+++.. ++. +++.|+..
T Consensus 15 ~~~~~s~--~~~~l~~~~~--d-------~~v~iw~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~d- 78 (342)
T 1yfq_A 15 SDIKIIP--SKSLLLITSW--D-------GSLTVYKFDIQAKNVDLLQSLR----YKHPLLCCNFIDNTDLQIYVGTVQ- 78 (342)
T ss_dssp EEEEEEG--GGTEEEEEET--T-------SEEEEEEEETTTTEEEEEEEEE----CSSCEEEEEEEESSSEEEEEEETT-
T ss_pred EEEEEcC--CCCEEEEEcC--C-------CeEEEEEeCCCCccccceeeee----cCCceEEEEECCCCCcEEEEEcCC-
Confidence 4455555 4566666662 2 357777776655 333321 11122233332 556 66677642
Q ss_pred CCCCccccccCcEEEEEC-CCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCC
Q 006384 146 SPNQERFHHYKDFWMLDL-KTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (647)
Q Consensus 146 ~~~~~~~~~~~dv~~yD~-~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (647)
..+.+||+ .+.....+... +....-.+++...+.+++.|+.. ..+.+||+.+
T Consensus 79 ----------g~i~~wd~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~l~s~~~d---------~~i~iwd~~~ 131 (342)
T 1yfq_A 79 ----------GEILKVDLIGSPSFQALTNN--EANLGICRICKYGDDKLIAASWD---------GLIEVIDPRN 131 (342)
T ss_dssp ----------SCEEEECSSSSSSEEECBSC--CCCSCEEEEEEETTTEEEEEETT---------SEEEEECHHH
T ss_pred ----------CeEEEEEeccCCceEecccc--CCCCceEEEEeCCCCEEEEEcCC---------CeEEEEcccc
Confidence 45889999 88876555431 01122222333335566666642 4577787764
No 150
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=91.98 E-value=9.8 Score=37.52 Aligned_cols=154 Identities=6% Similarity=-0.015 Sum_probs=72.1
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCC
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~ 178 (647)
+.+++||+.+.+++.+.......+......+.+ ++.||+..-...............+|+|++.. ....+...
T Consensus 73 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~---- 147 (297)
T 3g4e_A 73 TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQ---- 147 (297)
T ss_dssp TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEE----
T ss_pred CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEeec----
Confidence 368999999998887654321112222222333 56777743111000000001124689998753 33333220
Q ss_pred CcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEc--CCCceEEeccCCCCCCCC-CceeeeEEEe-CCEEEEEe
Q 006384 179 PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDL--DQFKWQEIKPRFGSMWPS-PRSGFQFFVY-QDEVFLYG 252 (647)
Q Consensus 179 ~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~--~t~~W~~v~~~~~~~~P~-~R~~~s~~~~-~~~Iyv~G 252 (647)
......+++. +..||+.... .+.|++|++ .+.......... ..+. ...-.++++. ++.|||..
T Consensus 148 ~~~pngi~~spdg~~lyv~~~~---------~~~i~~~~~d~~~G~~~~~~~~~--~~~~~~~~p~g~~~d~~G~lwva~ 216 (297)
T 3g4e_A 148 VDISNGLDWSLDHKIFYYIDSL---------SYSVDAFDYDLQTGQISNRRSVY--KLEKEEQIPDGMCIDAEGKLWVAC 216 (297)
T ss_dssp ESBEEEEEECTTSCEEEEEEGG---------GTEEEEEEECTTTCCEEEEEEEE--ECCGGGCEEEEEEEBTTSCEEEEE
T ss_pred cccccceEEcCCCCEEEEecCC---------CCcEEEEeccCCCCcccCcEEEE--ECCCCCCCCCeeEECCCCCEEEEE
Confidence 1111233333 3468877543 356788876 455443211100 0011 1111234443 66788765
Q ss_pred cccCCCCCcccCCCCCceeeeEEEEeCCCCeEEE
Q 006384 253 GYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (647)
Q Consensus 253 G~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (647)
.... .|++||+.+.+...
T Consensus 217 ~~~~----------------~v~~~d~~tG~~~~ 234 (297)
T 3g4e_A 217 YNGG----------------RVIRLDPVTGKRLQ 234 (297)
T ss_dssp ETTT----------------EEEEECTTTCCEEE
T ss_pred cCCC----------------EEEEEcCCCceEEE
Confidence 3222 38899998665443
No 151
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=91.97 E-value=0.7 Score=53.09 Aligned_cols=199 Identities=11% Similarity=0.084 Sum_probs=98.4
Q ss_pred CEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--C--CEEEEEeCCcCCCCCccccccCc
Q 006384 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--K--NYLYIFGGEFTSPNQERFHHYKD 157 (647)
Q Consensus 82 ~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~--~~iyv~GG~~~~~~~~~~~~~~d 157 (647)
+.+++.|+. + +.+.+||+.++.|..+.... ........+.+ . +.++++|+.. ..
T Consensus 67 ~~~l~s~s~--D-------g~I~vwd~~~~~~~~~~~~~--~h~~~V~~v~~sp~~~~~~l~sgs~d-----------g~ 124 (753)
T 3jro_A 67 GTILASCSY--D-------GKVLIWKEENGRWSQIAVHA--VHSASVNSVQWAPHEYGPLLLVASSD-----------GK 124 (753)
T ss_dssp CSEEEEEET--T-------SCEEEEEEETTEEEEEEEEC--CCSSCEEEEEECCGGGCSEEEEEETT-----------SE
T ss_pred CCEEEEEeC--C-------CeEEEEECCCCccccccccc--CCCCCeEEEEECCCCCCCEEEEEeCC-----------Cc
Confidence 667777773 2 36888999998877554322 11222233333 2 5677777743 45
Q ss_pred EEEEECCCCcEEEc-ccCCCCCCcceeEEEEE--------------CCEEEEEecccCCCCceeeeCcEEEEEcCCC--c
Q 006384 158 FWMLDLKTNQWEQL-NLKGCPSPRSGHRMVLY--------------KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--K 220 (647)
Q Consensus 158 v~~yD~~t~~W~~~-~~~~~P~~R~~h~~~~~--------------~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~--~ 220 (647)
+.+||+.+..-... ...+.+. .-.+++.. ++.+++.|+.+ ..+.+||+.+. .
T Consensus 125 I~vwdl~~~~~~~~~~~~~~~~--~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~d---------g~I~iwd~~~~~~~ 193 (753)
T 3jro_A 125 VSVVEFKENGTTSPIIIDAHAI--GVNSASWAPATIEEDGEHNGTKESRKFVTGGAD---------NLVKIWKYNSDAQT 193 (753)
T ss_dssp EEEEECCSSSCCCCEEEECCSS--CEEEEEECCCC---------CGGGCCEEEEETT---------SCEEEEEEETTTTE
T ss_pred EEEEEeecCCCcceeEeecCCC--ceEEEEecCcccccccccccCCCCCEEEEEECC---------CeEEEEeccCCccc
Confidence 77888876521111 1000111 11112222 25667777653 35777777654 3
Q ss_pred eEEeccCCCCCCCCCceeeeEEEe-C---CEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCe--EEEeecCCCCC
Q 006384 221 WQEIKPRFGSMWPSPRSGFQFFVY-Q---DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE--WSKVKKIGMPP 294 (647)
Q Consensus 221 W~~v~~~~~~~~P~~R~~~s~~~~-~---~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~--W~~v~~~g~~P 294 (647)
+..+.... .....-.+++.. + +.+++.||.++. +.+||+.+.. +...... ...
T Consensus 194 ~~~~~~~~----~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~----------------I~iwd~~~~~~~~~~~~~~-~~~ 252 (753)
T 3jro_A 194 YVLESTLE----GHSDWVRDVAWSPTVLLRSYLASVSQDRT----------------CIIWTQDNEQGPWKKTLLK-EEK 252 (753)
T ss_dssp EEEEEEEC----CCSSCEEEEEECCCCSSSEEEEEEESSSC----------------EEEEEESSSSSCCBCCBSS-SSC
T ss_pred ceeeeeec----CCCCcEEEEEeccCCCCCCEEEEEecCCE----------------EEEecCCCCCCcceeEEec-cCC
Confidence 44433321 111122233333 3 688888887665 6677765531 1111110 000
Q ss_pred CCceeeEEEEE-CCeEEEecceeccccCccccccccCCcEEEEECCC-CcEEEeEe
Q 006384 295 GPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN-HRWYPLEL 348 (647)
Q Consensus 295 ~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t-~~W~~l~~ 348 (647)
....-.++++. ++.+++.||.+ ..|.+|++.+ ..|..+..
T Consensus 253 ~~~~v~~l~~spdg~~l~s~s~D--------------g~I~vwd~~~~~~~~~~~~ 294 (753)
T 3jro_A 253 FPDVLWRASWSLSGNVLALSGGD--------------NKVTLWKENLEGKWEPAGE 294 (753)
T ss_dssp CSSCCCCEEECTTTCCEEEECSS--------------SCEECCBCCSSSCCBCCCC
T ss_pred CCCceEEEEEcCCCCEEEEEcCC--------------CEEEEEecCCCCCcccccc
Confidence 11111223333 56677777653 3488888774 46665543
No 152
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=91.95 E-value=5.3 Score=41.29 Aligned_cols=112 Identities=15% Similarity=0.163 Sum_probs=61.7
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCcc
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~ 151 (647)
++++.| ++.+++.|+. + ..+.+||+.+.+-...-... ...-.+++.. ++..++.|+..
T Consensus 128 ~v~~s~--dg~~l~s~~~--d-------~~i~iwd~~~~~~~~~~~~h---~~~v~~~~~~p~~~~l~s~s~d------- 186 (393)
T 1erj_A 128 SVCFSP--DGKFLATGAE--D-------RLIRIWDIENRKIVMILQGH---EQDIYSLDYFPSGDKLVSGSGD------- 186 (393)
T ss_dssp EEEECT--TSSEEEEEET--T-------SCEEEEETTTTEEEEEECCC---SSCEEEEEECTTSSEEEEEETT-------
T ss_pred EEEECC--CCCEEEEEcC--C-------CeEEEEECCCCcEEEEEccC---CCCEEEEEEcCCCCEEEEecCC-------
Confidence 455555 5677777773 2 36888999887654332211 1112222222 34555666542
Q ss_pred ccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceE
Q 006384 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ 222 (647)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~ 222 (647)
..+.+||+.+........ .. ..-..++.. ++.+++.|+.+ ..+.+||+.+..-.
T Consensus 187 ----~~v~iwd~~~~~~~~~~~--~~--~~v~~~~~~~~~~~~l~~~s~d---------~~v~iwd~~~~~~~ 242 (393)
T 1erj_A 187 ----RTVRIWDLRTGQCSLTLS--IE--DGVTTVAVSPGDGKYIAAGSLD---------RAVRVWDSETGFLV 242 (393)
T ss_dssp ----SEEEEEETTTTEEEEEEE--CS--SCEEEEEECSTTCCEEEEEETT---------SCEEEEETTTCCEE
T ss_pred ----CcEEEEECCCCeeEEEEE--cC--CCcEEEEEECCCCCEEEEEcCC---------CcEEEEECCCCcEE
Confidence 458888998876543322 11 111222222 56777777753 35788898876543
No 153
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=91.93 E-value=11 Score=37.73 Aligned_cols=199 Identities=10% Similarity=0.005 Sum_probs=102.9
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEEEEECCCC--cEEEcccCCC-
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--QWEQLNLKGC- 176 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~--~W~~~~~~~~- 176 (647)
+.++++|+.+.+........ .-..-+.+++. ++.||+.... ...|.+||+... .-..+...+.
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~--~~~~p~gia~d~~g~l~v~d~~-----------~~~v~~~~~~g~~~~~~~~~~~~~~ 135 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKN--LFYLPHGLSIDTDGNYWVTDVA-----------LHQVFKLDPHSKEGPLLILGRSMQP 135 (329)
T ss_dssp CCEEEECTTTCCEEEEECTT--TCSSEEEEEECTTSCEEEEETT-----------TTEEEEECTTCSSCCSEEESBTTBC
T ss_pred CcEEEEECCCCeEEeccCCC--ccCCceEEEECCCCCEEEEECC-----------CCEEEEEeCCCCeEEEEEecccCCC
Confidence 46999999877665332211 11122333333 5679987642 256889998765 2233322111
Q ss_pred ---CCCc-ceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCC--CCCce-eeeEEEe-C-
Q 006384 177 ---PSPR-SGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW--PSPRS-GFQFFVY-Q- 245 (647)
Q Consensus 177 ---P~~R-~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~--P~~R~-~~s~~~~-~- 245 (647)
+... .-..+++. ++.||+..++. .+.|.+||+....-..+.....+.. +.... -+++++. +
T Consensus 136 g~~~~~~~~P~~ia~~~~~g~lyv~d~~~--------~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~ 207 (329)
T 3fvz_A 136 GSDQNHFCQPTDVAVEPSTGAVFVSDGYC--------NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHL 207 (329)
T ss_dssp CCSTTCCSSEEEEEECTTTCCEEEEECSS--------CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTT
T ss_pred CCCccccCCCcEEEEeCCCCeEEEEeCCC--------CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCC
Confidence 1111 12233443 57899987531 2568889865443333322211000 11111 2344444 3
Q ss_pred CEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCcccc
Q 006384 246 DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVI 325 (647)
Q Consensus 246 ~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~ 325 (647)
+.|||...... .|.+|++.+.+....-.. ......-.++++..+.+|+..|.....
T Consensus 208 g~l~v~d~~~~----------------~I~~~~~~~G~~~~~~~~--~~~~~~~~~~~~~pg~~~~~~g~~~v~------ 263 (329)
T 3fvz_A 208 DQLCVADRENG----------------RIQCFKTDTKEFVREIKH--ASFGRNVFAISYIPGFLFAVNGKPYFG------ 263 (329)
T ss_dssp TEEEEEETTTT----------------EEEEEETTTCCEEEEECC--TTTTTCEEEEEEETTEEEEEECCCCTT------
T ss_pred CEEEEEECCCC----------------EEEEEECCCCcEEEEEec--cccCCCcceeeecCCEEEEeCCCEEec------
Confidence 89999876543 388999986555443221 112222334555567777776643211
Q ss_pred ccccCCcEEEEECCCCcEEE
Q 006384 326 MSLFLNELYGFQLDNHRWYP 345 (647)
Q Consensus 326 ~~~~~ndl~~yd~~t~~W~~ 345 (647)
....+.+++|++.+.+...
T Consensus 264 -~~~~~~v~~~~~~~g~~~~ 282 (329)
T 3fvz_A 264 -DQEPVQGFVMNFSSGEIID 282 (329)
T ss_dssp -CSCCCCEEEEETTTCCEEE
T ss_pred -cCCCcEEEEEEcCCCeEEE
Confidence 1223579999988876554
No 154
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=91.86 E-value=12 Score=37.91 Aligned_cols=199 Identities=10% Similarity=0.009 Sum_probs=95.1
Q ss_pred EEEEEcCeecCCCcceeeCcEEEEECCCCe-------EEEecCCCCCCCcceeEEEEE-C----C---EEEEEeCCcCCC
Q 006384 83 ELILYGGEFYNGNKTYVYGDLYRYDVEKQE-------WKVISSPNSPPPRSAHQAVSW-K----N---YLYIFGGEFTSP 147 (647)
Q Consensus 83 ~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~-------W~~l~s~~~P~~R~~ha~v~~-~----~---~iyv~GG~~~~~ 147 (647)
.+++.|+. + ..+.+||+.+.. -..+.... .+ -.+++.. + + .+++.|+..
T Consensus 27 ~~l~s~~~--d-------g~i~iw~~~~~~~~~~~~~~~~~~~h~--~~--v~~~~~~~~~~~~g~~~~~l~s~~~d--- 90 (397)
T 1sq9_A 27 SFTVSCSG--D-------GYLKVWDNKLLDNENPKDKSYSHFVHK--SG--LHHVDVLQAIERDAFELCLVATTSFS--- 90 (397)
T ss_dssp SEEEEEET--T-------SEEEEEESBCCTTCCGGGGEEEEECCT--TC--EEEEEEEEEEETTTEEEEEEEEEETT---
T ss_pred CeEEEEcC--C-------CEEEEEECCCcccccCCCcceEEecCC--Cc--EEEEEEecccccCCccccEEEEEcCC---
Confidence 56666662 2 367888888765 33333211 11 1222222 3 5 777777643
Q ss_pred CCccccccCcEEEEECCCCc------EEEcccCCCCC-CcceeEEEEE-----CCEE-EEEecccCCCCceeeeCcEEEE
Q 006384 148 NQERFHHYKDFWMLDLKTNQ------WEQLNLKGCPS-PRSGHRMVLY-----KHKI-IVFGGFYDTLREVRYYNDLYVF 214 (647)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~------W~~~~~~~~P~-~R~~h~~~~~-----~~~l-yv~GG~~~~~~~~~~~~dv~~y 214 (647)
..+.+||+.+.. +..+....... ...-.+++.. ++.+ ++.|+.. ..+.+|
T Consensus 91 --------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d---------g~i~iw 153 (397)
T 1sq9_A 91 --------GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK---------GTTYIW 153 (397)
T ss_dssp --------SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT---------SCEEEE
T ss_pred --------CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC---------CcEEEE
Confidence 357788877766 66665421000 1222233333 3555 7777653 357777
Q ss_pred EcCC------Cc---eE---EeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCC
Q 006384 215 DLDQ------FK---WQ---EIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT 281 (647)
Q Consensus 215 D~~t------~~---W~---~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t 281 (647)
|+.+ .. |. .+.............-.+++.. ++ +++.|+.++. +.+||+.+
T Consensus 154 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~----------------i~i~d~~~ 216 (397)
T 1sq9_A 154 KFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGT----------------VQISELST 216 (397)
T ss_dssp EEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSE----------------EEEEETTT
T ss_pred eCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCc----------------EEEEECCC
Confidence 7765 22 11 1110000000111122233333 45 7777776544 88899887
Q ss_pred CeEEEeecCC--CCCCCceeeEEEEE-CCeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 282 WEWSKVKKIG--MPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 282 ~~W~~v~~~g--~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
..-...-... ..+....-.++++. ++.+++.|+... ....|.+||+.+.+
T Consensus 217 ~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~-----------~~g~i~i~d~~~~~ 269 (397)
T 1sq9_A 217 LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN-----------SFGCITLYETEFGE 269 (397)
T ss_dssp TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET-----------TEEEEEEEETTTCC
T ss_pred CceeEEEeccccccccCCccceEEECCCCCEEEEEecCC-----------CCceEEEEECCCCc
Confidence 6544332210 00001122233333 567777777541 01358999987654
No 155
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=91.82 E-value=2.8 Score=42.71 Aligned_cols=50 Identities=10% Similarity=-0.051 Sum_probs=26.5
Q ss_pred EEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEecceeccccCccccccccCCcEEEEECCCC
Q 006384 274 LWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (647)
Q Consensus 274 v~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (647)
+.+||+.+..-...-. + ....-.++++. ++.+++.|+.. ..|.+||+.+.
T Consensus 316 i~v~d~~~~~~~~~~~-~---~~~~v~~~~~s~~~~~l~s~~~d--------------g~i~iw~~~~~ 366 (408)
T 4a11_B 316 IAVYTVYSGEQITMLK-G---HYKTVDCCVFQSNFQELYSGSRD--------------CNILAWVPSLY 366 (408)
T ss_dssp EEEEETTTCCEEEEEC-C---CSSCEEEEEEETTTTEEEEEETT--------------SCEEEEEECC-
T ss_pred EEEEECcCCcceeeec-c---CCCeEEEEEEcCCCCEEEEECCC--------------CeEEEEeCCCC
Confidence 7788876654333211 0 11112233444 56777777643 35888888764
No 156
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=91.78 E-value=3.3 Score=42.12 Aligned_cols=211 Identities=9% Similarity=0.073 Sum_probs=97.9
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEEC--CE-EEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCC
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK--NY-LYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCP 177 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~--~~-iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P 177 (647)
..++.+|+.+.+...+... ........... +. |++... ... . .....+|++|+.+..+..+.. .
T Consensus 168 ~~l~~~d~~~g~~~~~~~~----~~~~~~~~~sp~dg~~l~~~~~-~~~-~----~~~~~l~~~d~~~~~~~~l~~---~ 234 (396)
T 3c5m_A 168 CRLIKVDIETGELEVIHQD----TAWLGHPIYRPFDDSTVGFCHE-GPH-D----LVDARMWLVNEDGSNVRKIKE---H 234 (396)
T ss_dssp EEEEEEETTTCCEEEEEEE----SSCEEEEEEETTEEEEEEEEEC-SCS-S----SCSCCCEEEETTSCCCEESSC---C
T ss_pred ceEEEEECCCCcEEeeccC----CcccccceECCCCCCEEEEEec-CCC-C----CCCceEEEEECCCCceeEeec---c
Confidence 4789999999888776531 12222222222 44 444332 111 0 112579999998888777654 1
Q ss_pred CCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecc
Q 006384 178 SPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGY 254 (647)
Q Consensus 178 ~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~ 254 (647)
.+........+ +++.+++....... ....++++|+.+.+...+... +. .. ....- ++.++++++.
T Consensus 235 ~~~~~~~~~~~spdg~~l~~~~~~~~~----~~~~l~~~d~~~g~~~~l~~~-----~~--~~-~~~s~~dg~~l~~~~~ 302 (396)
T 3c5m_A 235 AEGESCTHEFWIPDGSAMAYVSYFKGQ----TDRVIYKANPETLENEEVMVM-----PP--CS-HLMSNFDGSLMVGDGC 302 (396)
T ss_dssp CTTEEEEEEEECTTSSCEEEEEEETTT----CCEEEEEECTTTCCEEEEEEC-----CS--EE-EEEECSSSSEEEEEEC
T ss_pred CCCccccceEECCCCCEEEEEecCCCC----ccceEEEEECCCCCeEEeeeC-----CC--CC-CCccCCCCceEEEecC
Confidence 11212222233 45534444332211 113499999998887777554 21 11 12222 5666666543
Q ss_pred cCCCCCccc-CCCCCceeeeEEEEeCCCCeEEEeecCCCCC-----C-CceeeEEEEE-CCeEEEecceeccccCccccc
Q 006384 255 SKEVSTDKN-QSEKGIIHSDLWSLDPRTWEWSKVKKIGMPP-----G-PRAGFSMCVH-KKRALLFGGVVDMEMKGDVIM 326 (647)
Q Consensus 255 ~~~~~~~~~-~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P-----~-~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~ 326 (647)
. ....... ..........++++|+.+.....+....... . .......+.. +++.++|.....
T Consensus 303 ~-~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~--------- 372 (396)
T 3c5m_A 303 D-APVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFE--------- 372 (396)
T ss_dssp C-C----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT---------
T ss_pred C-cceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCC---------
Confidence 2 1000000 0000012246999999887766664321100 0 0001111222 454444443221
Q ss_pred cccCCcEEEEECCCCcEEEeEe
Q 006384 327 SLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 327 ~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
-...||.+++.+..++.+..
T Consensus 373 --~~~~l~~~~~~~~~~~~~~~ 392 (396)
T 3c5m_A 373 --GVPAIYIADVPESYKHLEHH 392 (396)
T ss_dssp --SSCEEEEEECCTTCC-----
T ss_pred --CCceEEEEEEcccccccccc
Confidence 12469999998887776543
No 157
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=91.62 E-value=8.4 Score=38.03 Aligned_cols=193 Identities=10% Similarity=-0.001 Sum_probs=90.7
Q ss_pred EEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEE-ecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCcc
Q 006384 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKV-ISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (647)
Q Consensus 74 ~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~-l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~ 151 (647)
+.+.| ++.+++.|+. + ..+..||+.+.+-.. +.. ....-.+++.. ++.+++.|+..
T Consensus 61 ~~~~~--~~~~l~s~s~--d-------~~i~vwd~~~~~~~~~~~~----h~~~v~~~~~~~~~~~l~sgs~D------- 118 (304)
T 2ynn_A 61 GKFIA--RKNWIIVGSD--D-------FRIRVFNYNTGEKVVDFEA----HPDYIRSIAVHPTKPYVLSGSDD------- 118 (304)
T ss_dssp EEEEG--GGTEEEEEET--T-------SEEEEEETTTCCEEEEEEC----CSSCEEEEEECSSSSEEEEEETT-------
T ss_pred EEEeC--CCCEEEEECC--C-------CEEEEEECCCCcEEEEEeC----CCCcEEEEEEcCCCCEEEEECCC-------
Confidence 34444 4566666762 2 367888888765332 211 11111222222 45566677643
Q ss_pred ccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCC
Q 006384 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (647)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~ 229 (647)
..+.+||+.++. ....... .....-.+++.. ++.+++.|+.+ ..+.+||+.+..-......
T Consensus 119 ----~~v~lWd~~~~~-~~~~~~~-~h~~~v~~v~~~p~~~~~l~sgs~D---------~~v~iwd~~~~~~~~~~~~-- 181 (304)
T 2ynn_A 119 ----LTVKLWNWENNW-ALEQTFE-GHEHFVMCVAFNPKDPSTFASGCLD---------RTVKVWSLGQSTPNFTLTT-- 181 (304)
T ss_dssp ----SCEEEEEGGGTT-EEEEEEC-CCCSCEEEEEECTTCTTEEEEEETT---------SEEEEEETTCSSCSEEEEC--
T ss_pred ----CeEEEEECCCCc-chhhhhc-ccCCcEEEEEECCCCCCEEEEEeCC---------CeEEEEECCCCCccceecc--
Confidence 357778876542 1111100 011111122222 34677777753 3577888765432111111
Q ss_pred CCCCCCceeeeEEEe---CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-
Q 006384 230 SMWPSPRSGFQFFVY---QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH- 305 (647)
Q Consensus 230 ~~~P~~R~~~s~~~~---~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~- 305 (647)
...+....+... ++.+++.|+.++. +.+||+.+..-...-. +. .. .-.++++.
T Consensus 182 ---~~~~~v~~~~~~~~~~~~~l~s~s~D~~----------------i~iWd~~~~~~~~~~~-~h--~~-~v~~~~~~p 238 (304)
T 2ynn_A 182 ---GQERGVNYVDYYPLPDKPYMITASDDLT----------------IKIWDYQTKSCVATLE-GH--MS-NVSFAVFHP 238 (304)
T ss_dssp ---CCTTCEEEEEECCSTTCCEEEEEETTSE----------------EEEEETTTTEEEEEEE-CC--SS-CEEEEEECS
T ss_pred ---CCcCcEEEEEEEEcCCCCEEEEEcCCCe----------------EEEEeCCCCccceeeC-CC--CC-CEEEEEECC
Confidence 111111122222 4456777776554 7788887764322211 11 11 11222333
Q ss_pred CCeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 306 KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 306 ~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
++.+++.|+.. ..|.+||+.+.+
T Consensus 239 ~~~~l~s~s~D--------------g~i~iWd~~~~~ 261 (304)
T 2ynn_A 239 TLPIIISGSED--------------GTLKIWNSSTYK 261 (304)
T ss_dssp SSSEEEEEETT--------------SCEEEEETTTCC
T ss_pred CCCEEEEEcCC--------------CeEEEEECCCCc
Confidence 45667777643 358899987754
No 158
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=91.59 E-value=6 Score=37.22 Aligned_cols=148 Identities=13% Similarity=0.211 Sum_probs=80.8
Q ss_pred EEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCC--cEEE--ccc--CCCCCCcceeEEEEE--CCEEEEEecccC
Q 006384 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--QWEQ--LNL--KGCPSPRSGHRMVLY--KHKIIVFGGFYD 200 (647)
Q Consensus 129 a~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~--~W~~--~~~--~~~P~~R~~h~~~~~--~~~lyv~GG~~~ 200 (647)
+++.+++.+|+|=| +.+|+|+.... .... +.. .++|.. --++... ++++|+|-|
T Consensus 11 Ai~~~~g~~yfFkg-------------~~~Wr~~~~~~~~~~~p~~Is~~w~glP~~--IDAa~~~~~~~~~yfFkG--- 72 (195)
T 1itv_A 11 AIAEIGNQLYLFKD-------------GKYWRFSEGRGSRPQGPFLIADKWPALPRK--LDSVFEEPLSKKLFFFSG--- 72 (195)
T ss_dssp EEEEETTEEEEEET-------------TEEEEECCSSSCCCEEEEEHHHHCTTSCSS--CSEEEECTTTCCEEEEET---
T ss_pred EEEEeCCEEEEEEC-------------CEEEEEECCccccCCCcEEhhhccCCCCCC--ccEEEEECCCCeEEEEeC---
Confidence 45567999999987 46888887552 2222 211 233432 2233333 678999988
Q ss_pred CCCceeeeCcEEEEEcCCCce-EEeccCCCCCCCCC--ceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEE
Q 006384 201 TLREVRYYNDLYVFDLDQFKW-QEIKPRFGSMWPSP--RSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSL 277 (647)
Q Consensus 201 ~~~~~~~~~dv~~yD~~t~~W-~~v~~~~~~~~P~~--R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~y 277 (647)
+.+|+|+..+..- ..|... .+|.. ....++...++++|+|-|. ..|+|
T Consensus 73 --------~~yw~~~~~~~~~Pk~i~~~---G~p~~~~~iDAA~~~~~g~~yfFkg~------------------~ywr~ 123 (195)
T 1itv_A 73 --------RQVWVYTGASVLGPRRLDKL---GLGADVAQVTGALRSGRGKMLLFSGR------------------RLWRF 123 (195)
T ss_dssp --------TEEEEEETTEEEEEEEGGGG---TCCTTCCCCCEEEECSTTEEEEEETT------------------EEEEE
T ss_pred --------CEEEEEcCCccCCCEEeeec---ccCCCccceeEEEEcCCCeEEEEeCC------------------EEEEE
Confidence 3467776542111 111111 12321 2333333237899999763 37899
Q ss_pred eCCCCeEEE-----ee-c-CCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 278 DPRTWEWSK-----VK-K-IGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 278 d~~t~~W~~-----v~-~-~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
|..+.+-.. +. . .|. | ..-.++...++.+|+|-|. ..|.||..+.+
T Consensus 124 d~~~~~~~~gyPr~i~~~w~Gv-p--~~idaa~~~~g~~Yffkg~----------------~y~~~~~~~~~ 176 (195)
T 1itv_A 124 DVKAQMVDPRSASEVDRMFPGV-P--LDTHDVFQFREKAYFCQDR----------------FYWRVSSRSEL 176 (195)
T ss_dssp ETTTTEECGGGCEEHHHHSTTS-C--SSCSEEEEETTEEEEEETT----------------EEEEEECCTTC
T ss_pred eCCcccccCCCccChhhcCCCC-C--CCCCEEEEeCCeEEEEeCC----------------EEEEEECCccE
Confidence 987654211 10 0 111 2 1223444557999999873 47889887664
No 159
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=91.53 E-value=6.7 Score=39.03 Aligned_cols=121 Identities=11% Similarity=0.033 Sum_probs=60.6
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCc
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~ 150 (647)
.+++..+ ++.||+.+.. +.. ..+.+++||+.+.....+.... +....-..++.. ++.+|+........
T Consensus 90 ~~i~~~~--dg~l~v~~~~--~~~---~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~i~~d~~g~l~v~~~~~~~~--- 158 (333)
T 2dg1_A 90 AAIKIHK--DGRLFVCYLG--DFK---STGGIFAATENGDNLQDIIEDL-STAYCIDDMVFDSKGGFYFTDFRGYST--- 158 (333)
T ss_dssp EEEEECT--TSCEEEEECT--TSS---SCCEEEEECTTSCSCEEEECSS-SSCCCEEEEEECTTSCEEEEECCCBTT---
T ss_pred ceEEECC--CCcEEEEeCC--CCC---CCceEEEEeCCCCEEEEEEccC-ccCCcccceEECCCCCEEEEecccccc---
Confidence 3444444 5667766531 100 1136899999887665332111 111222223332 56788765321110
Q ss_pred cccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CC-EEEEEecccCCCCceeeeCcEEEEEcCC
Q 006384 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (647)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (647)
.....+|+||+.+.+...+... .......+.. ++ .||+.... .+.+++||+.+
T Consensus 159 --~~~~~l~~~~~~~~~~~~~~~~----~~~~~~i~~~~dg~~l~v~~~~---------~~~i~~~d~~~ 213 (333)
T 2dg1_A 159 --NPLGGVYYVSPDFRTVTPIIQN----ISVANGIALSTDEKVLWVTETT---------ANRLHRIALED 213 (333)
T ss_dssp --BCCEEEEEECTTSCCEEEEEEE----ESSEEEEEECTTSSEEEEEEGG---------GTEEEEEEECT
T ss_pred --CCCceEEEEeCCCCEEEEeecC----CCcccceEECCCCCEEEEEeCC---------CCeEEEEEecC
Confidence 0135799999988776655321 0111223332 33 57776432 25688898853
No 160
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=91.45 E-value=16 Score=41.44 Aligned_cols=150 Identities=15% Similarity=0.178 Sum_probs=81.7
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~ 160 (647)
++.|+|-.. +-+++||+.+.++..... . .+..-.+++..++.|||... +-+++
T Consensus 73 ~g~lWigT~-----------~Gl~~yd~~~~~f~~~~~-~--~~~~i~~i~~~~g~lWigt~-------------~Gl~~ 125 (758)
T 3ott_A 73 NTYLYMGTD-----------NGILVYNYRADRYEQPET-D--FPTDVRTMALQGDTLWLGAL-------------NGLYT 125 (758)
T ss_dssp TTEEEEEET-----------TEEEEEETTTTEECCCSC-C--CCSCEEEEEEETTEEEEEET-------------TEEEE
T ss_pred CCcEEEEeC-----------CCeEEEeCCCCEEECccc-C--CCceEEEEEecCCcEEEEcC-------------Cccee
Confidence 577776432 247899999987764211 1 11112233344788887432 35889
Q ss_pred EECCCCcEEEccc--CCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCce
Q 006384 161 LDLKTNQWEQLNL--KGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS 237 (647)
Q Consensus 161 yD~~t~~W~~~~~--~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~ 237 (647)
||+.+.++..+.. .+.|.... .+++.. ++.|||.. .+.+++||+.+.++..+....... .....
T Consensus 126 ~~~~~~~~~~~~~~~~~l~~~~i-~~i~~d~~g~lWigt-----------~~Gl~~~~~~~~~~~~~~~~~~~~-~~~~~ 192 (758)
T 3ott_A 126 YQLQSRKLTSFDTRRNGLPNNTI-YSIIRTKDNQIYVGT-----------YNGLCRYIPSNGKFEGIPLPVHSS-QSNLF 192 (758)
T ss_dssp EETTTCCEEEECHHHHCCSCSCE-EEEEECTTCCEEEEE-----------TTEEEEEETTTTEEEEECCCCCTT-CSSCC
T ss_pred EeCCCCeEEEeccCCCCcCCCeE-EEEEEcCCCCEEEEe-----------CCCHhhCccCCCceEEecCCCccc-cccce
Confidence 9999988887632 11222211 122222 67888732 134788999988877654321100 01111
Q ss_pred eeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEee
Q 006384 238 GFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (647)
Q Consensus 238 ~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~ 288 (647)
-.+++.. ++.|+| |- .. -+++|++.+.++....
T Consensus 193 i~~i~~d~~~~~lWi-gt-~~----------------Gl~~~~~~~~~~~~~~ 227 (758)
T 3ott_A 193 VNSLLEDTTRQCVWI-GT-EG----------------YLFQYFPSTGQIKQTE 227 (758)
T ss_dssp EEEEEEETTTTEEEE-EE-EE----------------EEEEEETTTTEEEEEE
T ss_pred eEEEEEECCCCEEEE-EE-CC----------------CCeEEcCCCCeEEecc
Confidence 2233333 235666 22 11 2789999988887654
No 161
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=91.41 E-value=8.2 Score=40.09 Aligned_cols=95 Identities=12% Similarity=0.168 Sum_probs=54.9
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCC
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~ 178 (647)
+.|+++|..+++...+-... .....-.++.+ ++.+++.|+.. ..|.+||+.+.+-..... ...
T Consensus 125 ~tV~lWd~~tg~~~~~~~~~--~~~~~V~sv~fspdg~~lasgs~D-----------g~v~iWd~~~~~~~~~~~--~h~ 189 (420)
T 4gga_A 125 NSVYLWSASSGDILQLLQME--QPGEYISSVAWIKEGNYLAVGTSS-----------AEVQLWDVQQQKRLRNMT--SHS 189 (420)
T ss_dssp TEEEEEETTTCCEEEEEECC--STTCCEEEEEECTTSSEEEEEETT-----------SCEEEEETTTTEEEEEEC--CCS
T ss_pred CEEEEEECCCCCEEEEEEec--CCCCcEEEEEECCCCCEEEEEECC-----------CeEEEEEcCCCcEEEEEe--CCC
Confidence 47899999998776543321 12222334444 46677777643 458889998876433221 122
Q ss_pred CcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCce
Q 006384 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (647)
Q Consensus 179 ~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W 221 (647)
.+ ..++.+++.+++.|+.. ..+..+|......
T Consensus 190 ~~--v~~~s~~~~~l~sgs~d---------~~i~~~d~~~~~~ 221 (420)
T 4gga_A 190 AR--VGSLSWNSYILSSGSRS---------GHIHHHDVRVAEH 221 (420)
T ss_dssp SC--EEEEEEETTEEEEEETT---------SEEEEEETTSSSC
T ss_pred Cc--eEEEeeCCCEEEEEeCC---------CceeEeeecccce
Confidence 22 33455677777777753 3567777665443
No 162
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=91.20 E-value=11 Score=41.75 Aligned_cols=115 Identities=15% Similarity=0.178 Sum_probs=63.5
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCC--eEEEecCCCCC-CCcc---eeEEEEECCEEEEEeCCcCCCCCccccc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNSP-PPRS---AHQAVSWKNYLYIFGGEFTSPNQERFHH 154 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~--~W~~l~s~~~P-~~R~---~ha~v~~~~~iyv~GG~~~~~~~~~~~~ 154 (647)
++.|||.... +.|+.+|..+. .|+.-...... .+.+ ..+.++.++.||+...
T Consensus 68 ~g~vyv~~~~----------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~------------ 125 (582)
T 1flg_A 68 DGVIYVTASY----------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL------------ 125 (582)
T ss_dssp TTEEEEEETT----------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET------------
T ss_pred CCEEEEEcCC----------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC------------
Confidence 7899987662 24899999876 58865432110 0111 1234567888888532
Q ss_pred cCcEEEEECCCCc--EEEcccCCCCCCc--ceeEEEEECC------EEEEEecccCCCCceeeeCcEEEEEcCCCc--eE
Q 006384 155 YKDFWMLDLKTNQ--WEQLNLKGCPSPR--SGHRMVLYKH------KIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQ 222 (647)
Q Consensus 155 ~~dv~~yD~~t~~--W~~~~~~~~P~~R--~~h~~~~~~~------~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~ 222 (647)
-..++.+|..+++ |+.-.. .+... ...+-++.++ .||+ |.... +......|+.||+.+.+ |+
T Consensus 126 dg~l~AlD~~TG~~~W~~~~~--~~~~~~~~~~sP~v~~~~~~G~~~v~v-g~~~~---e~~~~g~v~alD~~tG~~~W~ 199 (582)
T 1flg_A 126 DASVVALNKNTGKVVWKKKFA--DHGAGYTMTGAPTIVKDGKTGKVLLIH-GSSGD---EFGVVGRLFARDPDTGEEIWM 199 (582)
T ss_dssp TTEEEEEESSSCCEEEEEECS--CGGGTCBCCSCCEEEECTTTCCEEEEE-CCBCG---GGCCBCEEEEECTTTCCEEEE
T ss_pred CCEEEEEECCCCCEEeeecCC--CCCcCcccccCCEEeCCCcCCcEEEEE-ecccc---ccCCCCEEEEEECCCCCEEee
Confidence 1468999998884 875432 11111 1112244555 5554 33111 00124579999998765 86
Q ss_pred E
Q 006384 223 E 223 (647)
Q Consensus 223 ~ 223 (647)
.
T Consensus 200 ~ 200 (582)
T 1flg_A 200 R 200 (582)
T ss_dssp E
T ss_pred c
Confidence 5
No 163
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=91.20 E-value=12 Score=37.76 Aligned_cols=219 Identities=13% Similarity=0.107 Sum_probs=105.0
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~ 160 (647)
+++.++|... .++ ...+|.+|+.+.+.+.+.... ..........-+++.++|+.. -..+++
T Consensus 46 Dg~~l~~~~~-~~g-----~~~l~~~d~~~g~~~~lt~~~--~~~~~~~~~spdg~~l~~~~~-----------~~~l~~ 106 (388)
T 3pe7_A 46 DGSKLLFGGA-FDG-----PWNYYLLDLNTQVATQLTEGR--GDNTFGGFLSPDDDALFYVKD-----------GRNLMR 106 (388)
T ss_dssp TSCEEEEEEC-TTS-----SCEEEEEETTTCEEEECCCSS--CBCSSSCEECTTSSEEEEEET-----------TTEEEE
T ss_pred CCCEEEEEEc-CCC-----CceEEEEeCCCCceEEeeeCC--CCCccceEEcCCCCEEEEEeC-----------CCeEEE
Confidence 5665555552 122 136999999999888876532 111111112223433333331 146999
Q ss_pred EECCCCcEEEcccCCCCCCcceeEEEE--ECCEEEEEecccCC----C---------CceeeeCcEEEEEcCCCceEEec
Q 006384 161 LDLKTNQWEQLNLKGCPSPRSGHRMVL--YKHKIIVFGGFYDT----L---------REVRYYNDLYVFDLDQFKWQEIK 225 (647)
Q Consensus 161 yD~~t~~W~~~~~~~~P~~R~~h~~~~--~~~~lyv~GG~~~~----~---------~~~~~~~dv~~yD~~t~~W~~v~ 225 (647)
+|+.+..-..+.. .|.......... -++++++.--.... . ........++++|+.+.+-..+.
T Consensus 107 ~d~~~g~~~~~~~--~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 184 (388)
T 3pe7_A 107 VDLATLEENVVYQ--VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL 184 (388)
T ss_dssp EETTTCCEEEEEE--CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE
T ss_pred EECCCCcceeeee--chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEee
Confidence 9999987666544 333322222222 23333331100000 0 00112367999999988776665
Q ss_pred cCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEE
Q 006384 226 PRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV 304 (647)
Q Consensus 226 ~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~ 304 (647)
.. + ....+....- ++..+++...... ......+|.+|+.......+... +........+.
T Consensus 185 ~~-----~-~~~~~~~~sp~dg~~l~~~~~~~~----------~~~~~~l~~~d~~~~~~~~l~~~---~~~~~~~~~~~ 245 (388)
T 3pe7_A 185 QE-----N-QWLGHPIYRPYDDSTVAFCHEGPH----------DLVDARMWLINEDGTNMRKVKTH---AEGESCTHEFW 245 (388)
T ss_dssp EE-----S-SCEEEEEEETTEEEEEEEEECSCT----------TTSSCSEEEEETTSCCCEESCCC---CTTEEEEEEEE
T ss_pred cC-----C-ccccccEECCCCCCEEEEEEecCC----------CCCcceEEEEeCCCCceEEeeeC---CCCcccccceE
Confidence 43 1 1122222222 3444444332211 11234699999877666555331 11111112222
Q ss_pred E-CCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 305 H-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 305 ~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
. +++.++|..... ......|+++|+.+..-..+..
T Consensus 246 spdg~~l~~~~~~~---------~~~~~~l~~~d~~~g~~~~l~~ 281 (388)
T 3pe7_A 246 VPDGSALVYVSYLK---------GSPDRFIYSADPETLENRQLTS 281 (388)
T ss_dssp CTTSSCEEEEEEET---------TCCCEEEEEECTTTCCEEEEEE
T ss_pred CCCCCEEEEEecCC---------CCCcceEEEEecCCCceEEEEc
Confidence 2 555444433321 0111249999999988766644
No 164
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=91.17 E-value=3.6 Score=40.61 Aligned_cols=112 Identities=9% Similarity=0.150 Sum_probs=55.7
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-C---CEEEEEeCCcCCCC
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-K---NYLYIFGGEFTSPN 148 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~---~~iyv~GG~~~~~~ 148 (647)
++++.| ++++++.|+. + ..+.+||+.....+.+.... .....-..+.+ . +.+++.|+..
T Consensus 14 ~~~~s~--~g~~las~s~--D-------~~v~iw~~~~~~~~~~~~l~--gH~~~V~~v~~s~~~~g~~l~s~s~D---- 76 (297)
T 2pm7_B 14 DAVMDY--YGKRMATCSS--D-------KTIKIFEVEGETHKLIDTLT--GHEGPVWRVDWAHPKFGTILASCSYD---- 76 (297)
T ss_dssp EEEECT--TSSEEEEEET--T-------SCEEEEEBCSSCBCCCEEEC--CCSSCEEEEEECCGGGCSEEEEEETT----
T ss_pred EEEECC--CCCEEEEEeC--C-------CEEEEEecCCCCcEEEEEEc--cccCCeEEEEecCCCcCCEEEEEcCC----
Confidence 344444 5777778873 2 35777887654322111110 00111122333 1 5677777643
Q ss_pred CccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-C---CEEEEEecccCCCCceeeeCcEEEEEcCCC
Q 006384 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-K---HKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (647)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~---~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (647)
..|.+||+.+..|..+.... .....-.++.+ . +.+++.|+.+ ..+.+||+.+.
T Consensus 77 -------~~v~iWd~~~~~~~~~~~~~--~h~~~v~~v~~~p~~~g~~l~s~s~d---------~~v~~wd~~~~ 133 (297)
T 2pm7_B 77 -------GKVMIWKEENGRWSQIAVHA--VHSASVNSVQWAPHEYGPMLLVASSD---------GKVSVVEFKEN 133 (297)
T ss_dssp -------TEEEEEEBSSSCBCCCEEEC--CCSSCEEEEEECCGGGCSEEEEEETT---------SEEEEEEBCSS
T ss_pred -------CEEEEEEcCCCceEEEEEee--cCCCceeEEEeCcCCCCcEEEEEECC---------CcEEEEEecCC
Confidence 35778888887765443311 11111223333 2 4566667653 35677777654
No 165
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=91.12 E-value=7.2 Score=38.72 Aligned_cols=197 Identities=13% Similarity=0.122 Sum_probs=96.5
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-C----CEEEEEeCCcCC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-K----NYLYIFGGEFTS 146 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~----~~iyv~GG~~~~ 146 (647)
.++.+.|. +..+++.|+.. .+ -+.+..||+.+.+...+.... ... ...++.+ . +.+++.|+..
T Consensus 22 ~~~~~~p~-~~~l~~~~s~~-~~-----d~~v~iw~~~~~~~~~~~~~~--~~~-~v~~~~~~~~~~~~~~l~~~~~d-- 89 (357)
T 3i2n_A 22 FDCKWVPC-SAKFVTMGNFA-RG-----TGVIQLYEIQHGDLKLLREIE--KAK-PIKCGTFGATSLQQRYLATGDFG-- 89 (357)
T ss_dssp EEEEECTT-SSEEEEEEC---CC-----CEEEEEEEECSSSEEEEEEEE--ESS-CEEEEECTTCCTTTCCEEEEETT--
T ss_pred EEEEEcCC-CceEEEecCcc-CC-----CcEEEEEeCCCCcccceeeec--ccC-cEEEEEEcCCCCCCceEEEecCC--
Confidence 34555552 34677777620 00 136888898887765432210 111 1122233 2 3677777643
Q ss_pred CCCccccccCcEEEEECCCCc--EEEcccCCCCCCcceeEEEE-------ECCEEEEEecccCCCCceeeeCcEEEEEcC
Q 006384 147 PNQERFHHYKDFWMLDLKTNQ--WEQLNLKGCPSPRSGHRMVL-------YKHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (647)
Q Consensus 147 ~~~~~~~~~~dv~~yD~~t~~--W~~~~~~~~P~~R~~h~~~~-------~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~ 217 (647)
..+.+||+.+.. -..+.. .... -.++.. -++.+++.|+.. ..+.+||+.
T Consensus 90 ---------g~i~iwd~~~~~~~~~~~~~---~~~~-v~~~~~~~~~~~s~~~~~l~~~~~d---------~~i~vwd~~ 147 (357)
T 3i2n_A 90 ---------GNLHIWNLEAPEMPVYSVKG---HKEI-INAIDGIGGLGIGEGAPEIVTGSRD---------GTVKVWDPR 147 (357)
T ss_dssp ---------SCEEEECTTSCSSCSEEECC---CSSC-EEEEEEESGGGCC-CCCEEEEEETT---------SCEEEECTT
T ss_pred ---------CeEEEEeCCCCCccEEEEEe---cccc-eEEEeeccccccCCCccEEEEEeCC---------CeEEEEeCC
Confidence 357888887664 222211 1111 111111 245566677643 368889988
Q ss_pred CCc--eEEeccCCCCCCCCCceeeeEEE-----eCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecC
Q 006384 218 QFK--WQEIKPRFGSMWPSPRSGFQFFV-----YQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI 290 (647)
Q Consensus 218 t~~--W~~v~~~~~~~~P~~R~~~s~~~-----~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~ 290 (647)
+.. ...+..... ...+.-.+++. -++.+++.|+.++. +.+||+.+..-......
T Consensus 148 ~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~----------------i~i~d~~~~~~~~~~~~ 208 (357)
T 3i2n_A 148 QKDDPVANMEPVQG---ENKRDCWTVAFGNAYNQEERVVCAGYDNGD----------------IKLFDLRNMALRWETNI 208 (357)
T ss_dssp SCSSCSEEECCCTT---SCCCCEEEEEEECCCC-CCCEEEEEETTSE----------------EEEEETTTTEEEEEEEC
T ss_pred CCCCcceeccccCC---CCCCceEEEEEEeccCCCCCEEEEEccCCe----------------EEEEECccCceeeecCC
Confidence 764 344433211 11122222221 26677777766544 78889887764333221
Q ss_pred CCCCCCceeeEEEEE----CCeEEEecceeccccCccccccccCCcEEEEECCC
Q 006384 291 GMPPGPRAGFSMCVH----KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (647)
Q Consensus 291 g~~P~~R~~~s~~~~----~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (647)
...-.++++. ++..+++|+.. ..|.+||+.+
T Consensus 209 -----~~~v~~~~~~~~~~~~~~l~~~~~d--------------g~i~i~d~~~ 243 (357)
T 3i2n_A 209 -----KNGVCSLEFDRKDISMNKLVATSLE--------------GKFHVFDMRT 243 (357)
T ss_dssp -----SSCEEEEEESCSSSSCCEEEEEEST--------------TEEEEEEEEE
T ss_pred -----CCceEEEEcCCCCCCCCEEEEECCC--------------CeEEEEeCcC
Confidence 1122333333 45666666542 3477777654
No 166
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=91.10 E-value=2 Score=45.25 Aligned_cols=93 Identities=11% Similarity=0.104 Sum_probs=46.1
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCc
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R 180 (647)
.+.+||+.++....+..... ......++... ++.+++.|+.. ..|.+||+....-..+.. . .
T Consensus 188 ~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~g~~d-----------g~i~~wd~~~~~~~~~~~---h--~ 250 (435)
T 4e54_B 188 TTRLQDFKGNILRVFASSDT-INIWFCSLDVSASSRMVVTGDNV-----------GNVILLNMDGKELWNLRM---H--K 250 (435)
T ss_dssp CEEEEETTSCEEEEEECCSS-CSCCCCCEEEETTTTEEEEECSS-----------SBEEEEESSSCBCCCSBC---C--S
T ss_pred EEEEeeccCCceeEEeccCC-CCccEEEEEECCCCCEEEEEeCC-----------CcEeeeccCcceeEEEec---c--c
Confidence 46677887776665543321 11112223333 56677777743 457888886543211111 1 1
Q ss_pred ceeEEEEE---CCEEEEEecccCCCCceeeeCcEEEEEcCCCc
Q 006384 181 SGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (647)
Q Consensus 181 ~~h~~~~~---~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (647)
..-.++.+ +..+++.|+.+ ..|.+||+.+..
T Consensus 251 ~~v~~v~~~p~~~~~~~s~s~d---------~~v~iwd~~~~~ 284 (435)
T 4e54_B 251 KKVTHVALNPCCDWFLATASVD---------QTVKIWDLRQVR 284 (435)
T ss_dssp SCEEEEEECTTCSSEEEEEETT---------SBCCEEETTTCC
T ss_pred ceEEeeeecCCCceEEEEecCc---------ceeeEEeccccc
Confidence 11122333 33466677653 346677876543
No 167
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=91.04 E-value=6.3 Score=42.75 Aligned_cols=150 Identities=7% Similarity=-0.030 Sum_probs=75.7
Q ss_pred EEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCC-c-ceeEEEEE-C-CEEEEEecccCCCCceeeeCcEE
Q 006384 137 LYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP-R-SGHRMVLY-K-HKIIVFGGFYDTLREVRYYNDLY 212 (647)
Q Consensus 137 iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~-R-~~h~~~~~-~-~~lyv~GG~~~~~~~~~~~~dv~ 212 (647)
+++.|+.. ..+.+||+.+.+-...-. .... . .-.+++.. + +.+++.|+.. ..+.
T Consensus 175 ~l~~~~~d-----------~~v~vwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------g~i~ 232 (615)
T 1pgu_A 175 RSMTVGDD-----------GSVVFYQGPPFKFSASDR--THHKQGSFVRDVEFSPDSGEFVITVGSD---------RKIS 232 (615)
T ss_dssp EEEEEETT-----------TEEEEEETTTBEEEEEEC--SSSCTTCCEEEEEECSTTCCEEEEEETT---------CCEE
T ss_pred EEEEEeCC-----------CcEEEEeCCCcceeeeec--ccCCCCceEEEEEECCCCCCEEEEEeCC---------CeEE
Confidence 67776642 457888887655332211 1111 0 12222322 4 6677777753 4688
Q ss_pred EEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCC
Q 006384 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGM 292 (647)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~ 292 (647)
+||+.+.+....-.........+. .+++..++.+++.|+.++. +.+||+.+......-....
T Consensus 233 vwd~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~l~~~~~d~~----------------i~~wd~~~~~~~~~~~~~~ 294 (615)
T 1pgu_A 233 CFDGKSGEFLKYIEDDQEPVQGGI--FALSWLDSQKFATVGADAT----------------IRVWDVTTSKCVQKWTLDK 294 (615)
T ss_dssp EEETTTCCEEEECCBTTBCCCSCE--EEEEESSSSEEEEEETTSE----------------EEEEETTTTEEEEEEECCT
T ss_pred EEECCCCCEeEEecccccccCCce--EEEEEcCCCEEEEEcCCCc----------------EEEEECCCCcEEEEEcCCC
Confidence 999887765443211000001111 1222226777777776544 7788988765544332211
Q ss_pred CCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCC
Q 006384 293 PPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (647)
Q Consensus 293 ~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (647)
.+......+++..++..++.|+.. ..|.+||+.+
T Consensus 295 ~~~~~~~~~~~~~~~~~l~~~~~~--------------g~i~~~d~~~ 328 (615)
T 1pgu_A 295 QQLGNQQVGVVATGNGRIISLSLD--------------GTLNFYELGH 328 (615)
T ss_dssp TCGGGCEEEEEEEETTEEEEEETT--------------SCEEEEETTE
T ss_pred CcccCceeEEEeCCCCeEEEEECC--------------CCEEEEECCC
Confidence 111122223333366666666642 4578888765
No 168
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=91.03 E-value=4.2 Score=38.31 Aligned_cols=145 Identities=17% Similarity=0.357 Sum_probs=78.5
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCC--CeEE--EecC--CCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEK--QEWK--VISS--PNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERF 152 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~--~~W~--~l~s--~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~ 152 (647)
++++|+|=|. .+|+|+... .... .+.. +.+|. .--++... ++++|+|-|
T Consensus 16 ~g~~yfFkg~-----------~~Wr~~~~~~~~~~~p~~Is~~w~glP~--~IDAa~~~~~~~~~yfFkG---------- 72 (195)
T 1itv_A 16 GNQLYLFKDG-----------KYWRFSEGRGSRPQGPFLIADKWPALPR--KLDSVFEEPLSKKLFFFSG---------- 72 (195)
T ss_dssp TTEEEEEETT-----------EEEEECCSSSCCCEEEEEHHHHCTTSCS--SCSEEEECTTTCCEEEEET----------
T ss_pred CCEEEEEECC-----------EEEEEECCccccCCCcEEhhhccCCCCC--CccEEEEECCCCeEEEEeC----------
Confidence 6899999883 678887654 2222 2211 22332 22233333 578999988
Q ss_pred cccCcEEEEECCCCcE-EEcccCCCCCC--cceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceE-----Ee
Q 006384 153 HHYKDFWMLDLKTNQW-EQLNLKGCPSP--RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ-----EI 224 (647)
Q Consensus 153 ~~~~dv~~yD~~t~~W-~~~~~~~~P~~--R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~-----~v 224 (647)
+.+|+|+..+..- ..+...|+|.. ....+....++++|+|-| +..|+||..+.+-. .+
T Consensus 73 ---~~yw~~~~~~~~~Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg-----------~~ywr~d~~~~~~~~gyPr~i 138 (195)
T 1itv_A 73 ---RQVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSG-----------RRLWRFDVKAQMVDPRSASEV 138 (195)
T ss_dssp ---TEEEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEET-----------TEEEEEETTTTEECGGGCEEH
T ss_pred ---CEEEEEcCCccCCCEEeeecccCCCccceeEEEEcCCCeEEEEeC-----------CEEEEEeCCcccccCCCccCh
Confidence 4678888543211 12322244542 233233323689999977 35789998764311 11
Q ss_pred ccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCe
Q 006384 225 KPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (647)
Q Consensus 225 ~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (647)
.....+ +| ..-.++...++.+|+|-|. ..|+|+..+.+
T Consensus 139 ~~~w~G-vp--~~idaa~~~~g~~Yffkg~------------------~y~~~~~~~~~ 176 (195)
T 1itv_A 139 DRMFPG-VP--LDTHDVFQFREKAYFCQDR------------------FYWRVSSRSEL 176 (195)
T ss_dssp HHHSTT-SC--SSCSEEEEETTEEEEEETT------------------EEEEEECCTTC
T ss_pred hhcCCC-CC--CCCCEEEEeCCeEEEEeCC------------------EEEEEECCccE
Confidence 111111 12 1223444457999999874 26788876554
No 169
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=90.97 E-value=12 Score=36.15 Aligned_cols=198 Identities=9% Similarity=-0.053 Sum_probs=108.4
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~ 149 (647)
+.+++.+. ++.||+.-.. .+.+++|++....-..+..... ..-+.++.. ++.||+.-..
T Consensus 39 ~gi~~d~~-~~~ly~~d~~---------~~~I~~~~~~g~~~~~~~~~~~---~~p~~ia~d~~~~~lyv~d~~------ 99 (267)
T 1npe_A 39 IGLAFDCV-DKVVYWTDIS---------EPSIGRASLHGGEPTTIIRQDL---GSPEGIALDHLGRTIFWTDSQ------ 99 (267)
T ss_dssp EEEEEETT-TTEEEEEETT---------TTEEEEEESSSCCCEEEECTTC---CCEEEEEEETTTTEEEEEETT------
T ss_pred EEEEEecC-CCEEEEEECC---------CCEEEEEecCCCCcEEEEECCC---CCccEEEEEecCCeEEEEECC------
Confidence 55666543 4788887641 2478999998764443322111 123444544 5789998642
Q ss_pred ccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccC
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (647)
.+.+++|++....-..+...+.. .-..+++. +++||+..... ..+.++++++....-..+...
T Consensus 100 -----~~~I~~~~~~g~~~~~~~~~~~~---~P~~i~vd~~~g~lyv~~~~~-------~~~~I~~~~~dg~~~~~~~~~ 164 (267)
T 1npe_A 100 -----LDRIEVAKMDGTQRRVLFDTGLV---NPRGIVTDPVRGNLYWTDWNR-------DNPKIETSHMDGTNRRILAQD 164 (267)
T ss_dssp -----TTEEEEEETTSCSCEEEECSSCS---SEEEEEEETTTTEEEEEECCS-------SSCEEEEEETTSCCCEEEECT
T ss_pred -----CCEEEEEEcCCCCEEEEEECCCC---CccEEEEeeCCCEEEEEECCC-------CCcEEEEEecCCCCcEEEEEC
Confidence 25688999876543333321111 12234443 68899875321 024688888765433333221
Q ss_pred CCCCCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE
Q 006384 228 FGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (647)
Q Consensus 228 ~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~ 305 (647)
.. ..-.++++. ++.||+.-... +.+++|++....-..+...+ . .-+++++-
T Consensus 165 -----~~-~~P~gia~d~~~~~lyv~d~~~----------------~~I~~~~~~g~~~~~~~~~~--~---~P~gi~~d 217 (267)
T 1npe_A 165 -----NL-GLPNGLTFDAFSSQLCWVDAGT----------------HRAECLNPAQPGRRKVLEGL--Q---YPFAVTSY 217 (267)
T ss_dssp -----TC-SCEEEEEEETTTTEEEEEETTT----------------TEEEEEETTEEEEEEEEECC--C---SEEEEEEE
T ss_pred -----CC-CCCcEEEEcCCCCEEEEEECCC----------------CEEEEEecCCCceEEEecCC--C---CceEEEEe
Confidence 11 112234443 57888876433 34888998754333332211 1 12455666
Q ss_pred CCeEEEecceeccccCccccccccCCcEEEEECCCCcEE
Q 006384 306 KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (647)
Q Consensus 306 ~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (647)
++.||+.-.. .+.|++||+.+.+-.
T Consensus 218 ~~~lyva~~~--------------~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 218 GKNLYYTDWK--------------TNSVIAMDLAISKEM 242 (267)
T ss_dssp TTEEEEEETT--------------TTEEEEEETTTTEEE
T ss_pred CCEEEEEECC--------------CCeEEEEeCCCCCce
Confidence 8888885421 356999999876543
No 170
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=90.87 E-value=16 Score=37.76 Aligned_cols=67 Identities=9% Similarity=0.096 Sum_probs=38.7
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcE
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv 211 (647)
++.+++.|+.. ..+.+||+.+.+-...-. .+.....-.++.+ ++.+++.|+.+ ..+
T Consensus 181 ~~~~l~~~~~d-----------~~i~iwd~~~~~~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~~~d---------g~i 238 (437)
T 3gre_A 181 EKSLLVALTNL-----------SRVIIFDIRTLERLQIIE--NSPRHGAVSSICIDEECCVLILGTTR---------GII 238 (437)
T ss_dssp SCEEEEEEETT-----------SEEEEEETTTCCEEEEEE--CCGGGCCEEEEEECTTSCEEEEEETT---------SCE
T ss_pred CCCEEEEEeCC-----------CeEEEEeCCCCeeeEEEc--cCCCCCceEEEEECCCCCEEEEEcCC---------CeE
Confidence 36677777642 468899998876433221 1111112223333 56777777753 458
Q ss_pred EEEEcCCCceE
Q 006384 212 YVFDLDQFKWQ 222 (647)
Q Consensus 212 ~~yD~~t~~W~ 222 (647)
.+||+.+.+..
T Consensus 239 ~iwd~~~~~~~ 249 (437)
T 3gre_A 239 DIWDIRFNVLI 249 (437)
T ss_dssp EEEETTTTEEE
T ss_pred EEEEcCCccEE
Confidence 89999876543
No 171
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=90.79 E-value=15 Score=36.91 Aligned_cols=121 Identities=10% Similarity=0.005 Sum_probs=65.8
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEE-ECCEEEEEeCCcCCCCC
Q 006384 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVS-WKNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 71 ~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~-~~~~iyv~GG~~~~~~~ 149 (647)
+.+.+..|. ++.||+++.. .+.+++||+.++..+.+..+ . .-++++. -++.+||...
T Consensus 51 ~egp~~~~~-~~~l~~~d~~---------~~~i~~~d~~~~~~~~~~~~---~--~v~~i~~~~dg~l~v~~~------- 108 (326)
T 2ghs_A 51 GEGPTFDPA-SGTAWWFNIL---------ERELHELHLASGRKTVHALP---F--MGSALAKISDSKQLIASD------- 108 (326)
T ss_dssp EEEEEEETT-TTEEEEEEGG---------GTEEEEEETTTTEEEEEECS---S--CEEEEEEEETTEEEEEET-------
T ss_pred CcCCeEeCC-CCEEEEEECC---------CCEEEEEECCCCcEEEEECC---C--cceEEEEeCCCeEEEEEC-------
Confidence 344555553 3678877652 24789999998877655431 1 1223332 3678877642
Q ss_pred ccccccCcEEEEECCCCcEEEcccCCC--CCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEe
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQLNLKGC--PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~~~--P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (647)
..+++||+.+.+...+..... +..+.....+--+++||+. ...... ......||+|+ +.+...+
T Consensus 109 ------~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~-~~~~~~--~~~~~~l~~~~--~g~~~~~ 174 (326)
T 2ghs_A 109 ------DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIG-TMGRKA--ETGAGSIYHVA--KGKVTKL 174 (326)
T ss_dssp ------TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEE-EEETTC--CTTCEEEEEEE--TTEEEEE
T ss_pred ------CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEE-eCCCcC--CCCceEEEEEe--CCcEEEe
Confidence 348999999998877654211 1112222222225677763 221100 01135688888 4555544
No 172
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=90.74 E-value=15 Score=40.55 Aligned_cols=195 Identities=14% Similarity=0.100 Sum_probs=99.0
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEE-EecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKD 157 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~-~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~d 157 (647)
++.+||.... .+.+.++|+.+.+-. .++.+ ..-|.++.. +.++|+.+. ...
T Consensus 166 ~~~~~V~~~~---------~~~V~viD~~t~~v~~~i~~g-----~~p~~v~~SpDGr~lyv~~~------------dg~ 219 (567)
T 1qks_A 166 ENLFSVTLRD---------AGQIALIDGSTYEIKTVLDTG-----YAVHISRLSASGRYLFVIGR------------DGK 219 (567)
T ss_dssp GGEEEEEETT---------TTEEEEEETTTCCEEEEEECS-----SCEEEEEECTTSCEEEEEET------------TSE
T ss_pred CceEEEEeCC---------CCeEEEEECCCCeEEEEEeCC-----CCccceEECCCCCEEEEEcC------------CCe
Confidence 4677777651 358999999987544 34332 223444433 467887642 146
Q ss_pred EEEEECC--CCcEEEcccCCCCCCcceeEEEEE-----CC-EEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCC
Q 006384 158 FWMLDLK--TNQWEQLNLKGCPSPRSGHRMVLY-----KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (647)
Q Consensus 158 v~~yD~~--t~~W~~~~~~~~P~~R~~h~~~~~-----~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~ 229 (647)
|.+||+. +.+- +.. .+....-..+++. ++ ++|+..- ..+.+.+||..+.+=...-+...
T Consensus 220 V~viD~~~~t~~~--v~~--i~~G~~P~~ia~s~~~~pDGk~l~v~n~---------~~~~v~ViD~~t~~~~~~i~~~~ 286 (567)
T 1qks_A 220 VNMIDLWMKEPTT--VAE--IKIGSEARSIETSKMEGWEDKYAIAGAY---------WPPQYVIMDGETLEPKKIQSTRG 286 (567)
T ss_dssp EEEEETTSSSCCE--EEE--EECCSEEEEEEECCSTTCTTTEEEEEEE---------ETTEEEEEETTTCCEEEEEECCE
T ss_pred EEEEECCCCCCcE--eEE--EecCCCCceeEEccccCCCCCEEEEEEc---------cCCeEEEEECCCCcEEEEEeccc
Confidence 9999995 4432 221 1222222233333 34 5666532 23678899987765433222100
Q ss_pred ------CCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEE
Q 006384 230 ------SMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMC 303 (647)
Q Consensus 230 ------~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~ 303 (647)
...|.+|.....+...+..+++--. ....++++|........+... +..+..|...
T Consensus 287 ~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~---------------~~g~v~~vd~~~~~~~~v~~i---~~~~~~~d~~ 348 (567)
T 1qks_A 287 MTYDEQEYHPEPRVAAILASHYRPEFIVNVK---------------ETGKILLVDYTDLNNLKTTEI---SAERFLHDGG 348 (567)
T ss_dssp ECTTTCCEESCCCEEEEEECSSSSEEEEEET---------------TTTEEEEEETTCSSEEEEEEE---ECCSSEEEEE
T ss_pred cccccccccCCCceEEEEEcCCCCEEEEEec---------------CCCeEEEEecCCCccceeeee---eccccccCce
Confidence 0012344433222223333333211 123578888776554444332 3445555555
Q ss_pred EE-CCeEEEecceeccccCccccccccCCcEEEEECCCCcEEE
Q 006384 304 VH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (647)
Q Consensus 304 ~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (647)
+- +++.+++.-. ..|.|.++|+.+++=..
T Consensus 349 ~~pdgr~~~va~~-------------~sn~V~ViD~~t~kl~~ 378 (567)
T 1qks_A 349 LDGSHRYFITAAN-------------ARNKLVVIDTKEGKLVA 378 (567)
T ss_dssp ECTTSCEEEEEEG-------------GGTEEEEEETTTTEEEE
T ss_pred ECCCCCEEEEEeC-------------CCCeEEEEECCCCcEEE
Confidence 44 3443333221 14779999999886443
No 173
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=90.68 E-value=2.5 Score=43.10 Aligned_cols=103 Identities=14% Similarity=0.114 Sum_probs=52.0
Q ss_pred CEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEE
Q 006384 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFW 159 (647)
Q Consensus 82 ~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~ 159 (647)
+.+++.|+. + +.+..||+.+..-...... +.+......... ++.+++.|+.. ..+.
T Consensus 112 ~~~l~s~~~--d-------~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~v~ 169 (408)
T 4a11_B 112 TGMFTSSSF--D-------KTLKVWDTNTLQTADVFNF--EETVYSHHMSPVSTKHCLVAVGTRG-----------PKVQ 169 (408)
T ss_dssp TTCEEEEET--T-------SEEEEEETTTTEEEEEEEC--SSCEEEEEECSSCSSCCEEEEEESS-----------SSEE
T ss_pred CcEEEEEeC--C-------CeEEEeeCCCCccceeccC--CCceeeeEeecCCCCCcEEEEEcCC-----------CeEE
Confidence 446666662 1 3688899988765544321 122111111111 33466666642 4588
Q ss_pred EEECCCCcEEEcccCCCCCCcceeEEEEE--C-CEEEEEecccCCCCceeeeCcEEEEEcCCC
Q 006384 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLY--K-HKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (647)
Q Consensus 160 ~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~-~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (647)
+||+.+......-. .......++.+ + ..+++.|+.. ..+.+||+.+.
T Consensus 170 ~~d~~~~~~~~~~~----~~~~~v~~~~~~~~~~~ll~~~~~d---------g~i~i~d~~~~ 219 (408)
T 4a11_B 170 LCDLKSGSCSHILQ----GHRQEILAVSWSPRYDYILATASAD---------SRVKLWDVRRA 219 (408)
T ss_dssp EEESSSSCCCEEEC----CCCSCEEEEEECSSCTTEEEEEETT---------SCEEEEETTCS
T ss_pred EEeCCCcceeeeec----CCCCcEEEEEECCCCCcEEEEEcCC---------CcEEEEECCCC
Confidence 89987664322111 11111222222 2 3377777753 35788888654
No 174
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=90.63 E-value=12 Score=41.89 Aligned_cols=103 Identities=13% Similarity=0.104 Sum_probs=54.8
Q ss_pred EEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCc
Q 006384 191 KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGI 269 (647)
Q Consensus 191 ~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~ 269 (647)
.+++.|+.+ ..|.+||+.+.+-...-.. ....-.+++.. ++.+++.|+.++.
T Consensus 532 ~~l~s~s~d---------~~v~vwd~~~~~~~~~~~~------h~~~v~~v~~spdg~~l~sg~~Dg~------------ 584 (694)
T 3dm0_A 532 PTIVSASWD---------KTVKVWNLSNCKLRSTLAG------HTGYVSTVAVSPDGSLCASGGKDGV------------ 584 (694)
T ss_dssp CEEEEEETT---------SCEEEEETTTCCEEEEECC------CSSCEEEEEECTTSSEEEEEETTSB------------
T ss_pred ceEEEEeCC---------CeEEEEECCCCcEEEEEcC------CCCCEEEEEEeCCCCEEEEEeCCCe------------
Confidence 355666643 4588889877654332111 11112223333 6678888887665
Q ss_pred eeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcE
Q 006384 270 IHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (647)
Q Consensus 270 ~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (647)
+.+||+.+.+-.. .. .....-+++++..+..+++++.. +.|.+||+.+..-
T Consensus 585 ----i~iwd~~~~~~~~--~~---~~~~~v~~~~~sp~~~~l~~~~~--------------~~i~iwd~~~~~~ 635 (694)
T 3dm0_A 585 ----VLLWDLAEGKKLY--SL---EANSVIHALCFSPNRYWLCAATE--------------HGIKIWDLESKSI 635 (694)
T ss_dssp ----CEEEETTTTEEEE--CC---BCSSCEEEEEECSSSSEEEEEET--------------TEEEEEETTTTEE
T ss_pred ----EEEEECCCCceEE--Ee---cCCCcEEEEEEcCCCcEEEEEcC--------------CCEEEEECCCCCC
Confidence 6788887764322 11 11122344455544445554432 3489999987643
No 175
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=90.49 E-value=14 Score=36.07 Aligned_cols=114 Identities=11% Similarity=0.114 Sum_probs=55.5
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCC--eEEEecCCCCCCCcceeEEEEE-C---CEEEEEeCCcCC
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNSPPPRSAHQAVSW-K---NYLYIFGGEFTS 146 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~--~W~~l~s~~~P~~R~~ha~v~~-~---~~iyv~GG~~~~ 146 (647)
++.+.| ++.+++.|+. + ..+.+||+.+. .++.+.... .....-..+.+ . +.+++.|+..
T Consensus 16 ~~~~~~--~~~~l~~~~~--d-------g~i~iw~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~d~~~l~s~~~d-- 80 (351)
T 3f3f_A 16 DVVYDF--YGRHVATCSS--D-------QHIKVFKLDKDTSNWELSDSWR--AHDSSIVAIDWASPEYGRIIASASYD-- 80 (351)
T ss_dssp EEEECS--SSSEEEEEET--T-------SEEEEEEECSSSCCEEEEEEEE--CCSSCEEEEEECCGGGCSEEEEEETT--
T ss_pred EEEEcC--CCCEEEEeeC--C-------CeEEEEECCCCCCcceecceec--cCCCcEEEEEEcCCCCCCEEEEEcCC--
Confidence 344445 5667777772 2 35677777643 344332111 11112222333 2 6677777753
Q ss_pred CCCccccccCcEEEEECCCC-------cEEEcccCCCCCCcceeEEEEE-C--CEEEEEecccCCCCceeeeCcEEEEEc
Q 006384 147 PNQERFHHYKDFWMLDLKTN-------QWEQLNLKGCPSPRSGHRMVLY-K--HKIIVFGGFYDTLREVRYYNDLYVFDL 216 (647)
Q Consensus 147 ~~~~~~~~~~dv~~yD~~t~-------~W~~~~~~~~P~~R~~h~~~~~-~--~~lyv~GG~~~~~~~~~~~~dv~~yD~ 216 (647)
..+.+||+.+. .|..+....... ..-.+++.. + +.+++.|+.+ ..+.+||+
T Consensus 81 ---------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~d---------g~v~iwd~ 141 (351)
T 3f3f_A 81 ---------KTVKLWEEDPDQEECSGRRWNKLCTLNDSK-GSLYSVKFAPAHLGLKLACLGND---------GILRLYDA 141 (351)
T ss_dssp ---------SCEEEEEECTTSCTTSSCSEEEEEEECCCS-SCEEEEEECCGGGCSEEEEEETT---------CEEEEEEC
T ss_pred ---------CeEEEEecCCCcccccccCcceeeeecccC-CceeEEEEcCCCCCcEEEEecCC---------CcEEEecC
Confidence 34677777654 344443311111 111222222 2 5667777642 45788887
Q ss_pred CCCc
Q 006384 217 DQFK 220 (647)
Q Consensus 217 ~t~~ 220 (647)
.+.+
T Consensus 142 ~~~~ 145 (351)
T 3f3f_A 142 LEPS 145 (351)
T ss_dssp SSTT
T ss_pred CChH
Confidence 6543
No 176
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=90.48 E-value=5.6 Score=40.69 Aligned_cols=206 Identities=12% Similarity=0.038 Sum_probs=96.1
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCC----C-eEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCc
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEK----Q-EWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEF 144 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~----~-~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~ 144 (647)
.++...| ++.+++.|+. + ..+.+||+.+ . .-..+... ...-.+++.. ++.+++.|+..
T Consensus 71 ~~~~~s~--~~~~l~~~~~--d-------g~v~vw~~~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~l~s~~~d 135 (416)
T 2pm9_A 71 NDLDWSH--NNKIIAGALD--N-------GSLELYSTNEANNAINSMARFSNH----SSSVKTVKFNAKQDNVLASGGNN 135 (416)
T ss_dssp EEEEECS--SSSCEEEEES--S-------SCEEEECCSSTTSCCCEEEECCCS----SSCCCEEEECSSSTTBEEEECSS
T ss_pred EEEEECC--CCCeEEEEcc--C-------CeEEEeecccccccccchhhccCC----ccceEEEEEcCCCCCEEEEEcCC
Confidence 3445555 5667777762 2 3678888876 1 22232211 1111222222 25677777643
Q ss_pred CCCCCccccccCcEEEEECCCCc------EE-EcccCCCCCCcceeEEEEE-C-CEEEEEecccCCCCceeeeCcEEEEE
Q 006384 145 TSPNQERFHHYKDFWMLDLKTNQ------WE-QLNLKGCPSPRSGHRMVLY-K-HKIIVFGGFYDTLREVRYYNDLYVFD 215 (647)
Q Consensus 145 ~~~~~~~~~~~~dv~~yD~~t~~------W~-~~~~~~~P~~R~~h~~~~~-~-~~lyv~GG~~~~~~~~~~~~dv~~yD 215 (647)
..+.+||+.+.. -. .+... ......-.+++.. + +.+++.|+.. ..+.+||
T Consensus 136 -----------g~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d---------g~v~iwd 194 (416)
T 2pm9_A 136 -----------GEIFIWDMNKCTESPSNYTPLTPGQS-MSSVDEVISLAWNQSLAHVFASAGSS---------NFASIWD 194 (416)
T ss_dssp -----------SCEEBCBTTTTSSCTTTCCCBCCCCS-CCSSCCCCEEEECSSCTTEEEEESSS---------SCEEEEE
T ss_pred -----------CeEEEEECCCCccccccccccccccc-cCCCCCeeEEEeCCCCCcEEEEEcCC---------CCEEEEE
Confidence 357788887764 11 11000 0111111223332 2 5677777753 4688999
Q ss_pred cCCCceEEeccCCCCCCCCCceeeeEEEe-C-CEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCC
Q 006384 216 LDQFKWQEIKPRFGSMWPSPRSGFQFFVY-Q-DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMP 293 (647)
Q Consensus 216 ~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~-~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~ 293 (647)
+.+.+....-............-.+++.. + ..+++.|+.++. ...+.+||+.+..- .+.... .
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-------------~~~i~~~d~~~~~~-~~~~~~-~ 259 (416)
T 2pm9_A 195 LKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN-------------DPSILIWDLRNANT-PLQTLN-Q 259 (416)
T ss_dssp TTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS-------------SCCCCEEETTSTTS-CSBCCC-S
T ss_pred CCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC-------------CceEEEEeCCCCCC-CcEEee-c
Confidence 98876543332210000001122233333 2 357777776541 01266777765320 011000 0
Q ss_pred CCCceeeEEEEE--CCeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 294 PGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 294 P~~R~~~s~~~~--~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
.....-.++++. ++.+++.|+.. ..|.+||+.+.+
T Consensus 260 ~~~~~v~~~~~s~~~~~~l~s~~~d--------------g~v~~wd~~~~~ 296 (416)
T 2pm9_A 260 GHQKGILSLDWCHQDEHLLLSSGRD--------------NTVLLWNPESAE 296 (416)
T ss_dssp CCSSCEEEEEECSSCSSCEEEEESS--------------SEEEEECSSSCC
T ss_pred CccCceeEEEeCCCCCCeEEEEeCC--------------CCEEEeeCCCCc
Confidence 011112233332 56777777643 348888887764
No 177
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=90.34 E-value=14 Score=35.98 Aligned_cols=29 Identities=7% Similarity=0.020 Sum_probs=19.8
Q ss_pred CCeEEEecceeccccCccccccccCCcEEEEECCCC-cEEEeEe
Q 006384 306 KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH-RWYPLEL 348 (647)
Q Consensus 306 ~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~-~W~~l~~ 348 (647)
++.+++.||.+ ..|.+|++.+. .|..+..
T Consensus 317 ~~~~l~s~~~d--------------g~v~iw~~~~~~~~~~~~~ 346 (351)
T 3f3f_A 317 TGTILSSAGDD--------------GKVRLWKATYSNEFKCMSV 346 (351)
T ss_dssp SSCCEEEEETT--------------SCEEEEEECTTSCEEEEEE
T ss_pred CCCEEEEecCC--------------CcEEEEecCcCcchhheee
Confidence 46666776643 35889998764 6877765
No 178
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=90.29 E-value=6.9 Score=44.06 Aligned_cols=150 Identities=11% Similarity=0.033 Sum_probs=79.5
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc---eEEeccCCCCCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK---WQEIKPRFGSMW 232 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~---W~~v~~~~~~~~ 232 (647)
+.+|.++..+..|..+... .... ...+..++.||+...... ....|+.+|+.+.. |+.+.+..
T Consensus 252 ~~l~~~~~~~~~~~~l~~~---~~~~-~~~~~~~g~l~~~s~~~~------~~~~l~~~d~~~~~~~~~~~l~~~~---- 317 (695)
T 2bkl_A 252 NDVYWKRPGEKDFRLLVKG---VGAK-YEVHAWKDRFYVLTDEGA------PRQRVFEVDPAKPARASWKEIVPED---- 317 (695)
T ss_dssp EEEEEECTTCSSCEEEEEC---SSCC-EEEEEETTEEEEEECTTC------TTCEEEEEBTTBCSGGGCEEEECCC----
T ss_pred eEEEEEcCCCCceEEeecC---CCce-EEEEecCCcEEEEECCCC------CCCEEEEEeCCCCCccCCeEEecCC----
Confidence 5789998877788887652 1111 122224556666543321 13578999987755 88876531
Q ss_pred CCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEE-ECCeEEE
Q 006384 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV-HKKRALL 311 (647)
Q Consensus 233 P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~-~~~~iyi 311 (647)
+ ...-..++..++.|++....+. ...+|++++....-..+.. |....-.+++. -++..++
T Consensus 318 ~-~~~l~~~~~~~~~lv~~~~~dg--------------~~~l~~~~~~g~~~~~l~~----~~~~~v~~~~~s~d~~~l~ 378 (695)
T 2bkl_A 318 S-SASLLSVSIVGGHLSLEYLKDA--------------TSEVRVATLKGKPVRTVQL----PGVGAASNLMGLEDLDDAY 378 (695)
T ss_dssp S-SCEEEEEEEETTEEEEEEEETT--------------EEEEEEEETTCCEEEECCC----SSSSEECCCBSCTTCSEEE
T ss_pred C-CCeEEEEEEECCEEEEEEEECC--------------EEEEEEEeCCCCeeEEecC----CCCeEEEEeecCCCCCEEE
Confidence 1 1122233444888887765433 2458888876543333321 21111011111 1333333
Q ss_pred ecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 312 fGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
|...+. ..-..||.||+.++....+..
T Consensus 379 ~~~ss~----------~~P~~v~~~d~~~g~~~~l~~ 405 (695)
T 2bkl_A 379 YVFTSF----------TTPRQIYKTSVSTGKSELWAK 405 (695)
T ss_dssp EEEEET----------TEEEEEEEEETTTCCEEEEEE
T ss_pred EEEcCC----------CCCCEEEEEECCCCcEEEEec
Confidence 333221 113569999999888766654
No 179
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=90.26 E-value=11 Score=39.61 Aligned_cols=17 Identities=12% Similarity=0.337 Sum_probs=12.6
Q ss_pred eeeEEEEE-CCeEEEecc
Q 006384 298 AGFSMCVH-KKRALLFGG 314 (647)
Q Consensus 298 ~~~s~~~~-~~~iyifGG 314 (647)
..|++++. ++.+|.+|-
T Consensus 338 ~~hs~alt~~G~v~~wG~ 355 (406)
T 4d9s_A 338 WRHTLAVTERNNVFAWGR 355 (406)
T ss_dssp SSEEEEEETTSCEEEEEC
T ss_pred CCeEEEEeCCCCEEEecC
Confidence 35777776 688999984
No 180
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=89.88 E-value=7.5 Score=42.15 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=18.5
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCC
Q 006384 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ 111 (647)
Q Consensus 71 ~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~ 111 (647)
-.++.+.| ++.++++|+ + +.+.+||+.+.
T Consensus 21 v~~~~~sp--dg~~l~~~~----~------~~v~v~~~~~~ 49 (615)
T 1pgu_A 21 TTHLSYDP--TTNAIAYPC----G------KSAFVRCLDDG 49 (615)
T ss_dssp CCCCEEET--TTTEEEEEE----T------TEEEEEECCSS
T ss_pred eeEEEECC--CCCEEEEec----C------CeEEEEECCCC
Confidence 34455666 566777766 1 26788898865
No 181
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=89.85 E-value=19 Score=36.71 Aligned_cols=184 Identities=7% Similarity=-0.091 Sum_probs=90.7
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCC
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~ 179 (647)
+.+.++|+.+.+........ .. -.+++.. ++.+++.|+. +.+.+++..+..............
T Consensus 157 ~~i~iwd~~~~~~~~~~~~~--~~--V~~v~fspdg~~l~s~s~------------~~~~~~~~~~~~~~~~~~~~~~~~ 220 (365)
T 4h5i_A 157 AIMRIIDPSDLTEKFEIETR--GE--VKDLHFSTDGKVVAYITG------------SSLEVISTVTGSCIARKTDFDKNW 220 (365)
T ss_dssp CEEEEEETTTTEEEEEEECS--SC--CCEEEECTTSSEEEEECS------------SCEEEEETTTCCEEEEECCCCTTE
T ss_pred CEEEEeECCCCcEEEEeCCC--Cc--eEEEEEccCCceEEeccc------------eeEEEEEeccCcceeeeecCCCCC
Confidence 36788899888765432211 11 1222222 4566666542 346677877776544332111111
Q ss_pred cceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCC
Q 006384 180 RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEV 258 (647)
Q Consensus 180 R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~ 258 (647)
........-++.+++.++..... ...++.++.....+..+...... .....-.+++.. ++.+++.|+.++.
T Consensus 221 ~v~~v~fspdg~~l~~~s~d~~~-----~~~i~~~~~~~~~~~~~~~~~~~--~~~~~V~~~~~Spdg~~lasgs~D~~- 292 (365)
T 4h5i_A 221 SLSKINFIADDTVLIAASLKKGK-----GIVLTKISIKSGNTSVLRSKQVT--NRFKGITSMDVDMKGELAVLASNDNS- 292 (365)
T ss_dssp EEEEEEEEETTEEEEEEEESSSC-----CEEEEEEEEETTEEEEEEEEEEE--SSCSCEEEEEECTTSCEEEEEETTSC-
T ss_pred CEEEEEEcCCCCEEEEEecCCcc-----eeEEeecccccceecceeeeeec--CCCCCeEeEEECCCCCceEEEcCCCE-
Confidence 12222223377888877764321 12466677666555433221000 001111222233 7788888887765
Q ss_pred CCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEecceeccccCccccccccCCcEEEEE
Q 006384 259 STDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQ 337 (647)
Q Consensus 259 ~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd 337 (647)
|.+||..+.+-...-..+. . ..-.++++. ++++++.|+.+ +.|-+|+
T Consensus 293 ---------------V~iwd~~~~~~~~~~~~gH--~-~~V~~v~fSpdg~~laS~S~D--------------~tvrvw~ 340 (365)
T 4h5i_A 293 ---------------IALVKLKDLSMSKIFKQAH--S-FAITEVTISPDSTYVASVSAA--------------NTIHIIK 340 (365)
T ss_dssp ---------------EEEEETTTTEEEEEETTSS--S-SCEEEEEECTTSCEEEEEETT--------------SEEEEEE
T ss_pred ---------------EEEEECCCCcEEEEecCcc--c-CCEEEEEECCCCCEEEEEeCC--------------CeEEEEE
Confidence 8889988765332211111 0 111223333 67777777643 4588888
Q ss_pred CCC
Q 006384 338 LDN 340 (647)
Q Consensus 338 ~~t 340 (647)
+..
T Consensus 341 ip~ 343 (365)
T 4h5i_A 341 LPL 343 (365)
T ss_dssp CCT
T ss_pred cCC
Confidence 754
No 182
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=89.85 E-value=4.4 Score=40.33 Aligned_cols=105 Identities=12% Similarity=0.135 Sum_probs=52.8
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCe--EEEecCCCCCCCcceeEEEE-----ECCEEEEEeCCcCCCCCcccc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSPPPRSAHQAVS-----WKNYLYIFGGEFTSPNQERFH 153 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~--W~~l~s~~~P~~R~~ha~v~-----~~~~iyv~GG~~~~~~~~~~~ 153 (647)
++.+++.|+. + ..+..||+.+.. ...+........+.-.+++. -++.+++.|+..
T Consensus 128 ~~~~l~~~~~--d-------~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d--------- 189 (357)
T 3i2n_A 128 GAPEIVTGSR--D-------GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN--------- 189 (357)
T ss_dssp CCCEEEEEET--T-------SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETT---------
T ss_pred CccEEEEEeC--C-------CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccC---------
Confidence 3455666652 2 367888887654 33333221111222223321 256666776532
Q ss_pred ccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE----CCEEEEEecccCCCCceeeeCcEEEEEcCC
Q 006384 154 HYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY----KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (647)
Q Consensus 154 ~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~----~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (647)
..+.+||+.+..-..... . ...-.+++.. ++.+++.|+.. ..+.+||+.+
T Consensus 190 --~~i~i~d~~~~~~~~~~~--~--~~~v~~~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~ 243 (357)
T 3i2n_A 190 --GDIKLFDLRNMALRWETN--I--KNGVCSLEFDRKDISMNKLVATSLE---------GKFHVFDMRT 243 (357)
T ss_dssp --SEEEEEETTTTEEEEEEE--C--SSCEEEEEESCSSSSCCEEEEEEST---------TEEEEEEEEE
T ss_pred --CeEEEEECccCceeeecC--C--CCceEEEEcCCCCCCCCEEEEECCC---------CeEEEEeCcC
Confidence 468899998876433322 1 1122233333 45666666642 3567777654
No 183
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=89.79 E-value=20 Score=36.97 Aligned_cols=195 Identities=12% Similarity=0.230 Sum_probs=102.3
Q ss_pred cceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCC-CCCC--c-------ceeEEEEE----CC
Q 006384 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN-SPPP--R-------SAHQAVSW----KN 135 (647)
Q Consensus 70 ~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~-~P~~--R-------~~ha~v~~----~~ 135 (647)
.-+++++.|.+.+.||+.+.. +. +-.-|++.+-...+|+.+..+. .|.. + .-++++.. .+
T Consensus 56 ~v~~i~~dp~~~~~l~~g~~~---g~---~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~ 129 (394)
T 3b7f_A 56 TIHHIVQDPREPERMLMAART---GH---LGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPG 129 (394)
T ss_dssp EEEEEEECSSSTTCEEEEEEC--------CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTT
T ss_pred ceEEEEECCCCCCeEEEEecC---CC---CCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCC
Confidence 446667766445778876542 11 0114777766778999886431 1111 1 11123332 46
Q ss_pred EEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCC-CCC--------------CcceeEEEEE---CCEEEEEec
Q 006384 136 YLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-CPS--------------PRSGHRMVLY---KHKIIVFGG 197 (647)
Q Consensus 136 ~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~-~P~--------------~R~~h~~~~~---~~~lyv~GG 197 (647)
.||+.+. ..-|++.+-...+|+.+.... .|. ....+.+++. .+.||+..+
T Consensus 130 ~l~~g~~------------~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~ 197 (394)
T 3b7f_A 130 TWYAGTS------------PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS 197 (394)
T ss_dssp CEEEEEE------------TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE
T ss_pred EEEEEec------------CCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC
Confidence 6777542 135778877778999885310 121 1122344433 356777543
Q ss_pred ccCCCCceeeeCcEEEEEcCCCceEEeccCC-CCCCCCC-----ceeeeEEEeC---CEEEEEecccCCCCCcccCCCCC
Q 006384 198 FYDTLREVRYYNDLYVFDLDQFKWQEIKPRF-GSMWPSP-----RSGFQFFVYQ---DEVFLYGGYSKEVSTDKNQSEKG 268 (647)
Q Consensus 198 ~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~-~~~~P~~-----R~~~s~~~~~---~~Iyv~GG~~~~~~~~~~~~~~~ 268 (647)
. ..|++.+-...+|+.+.... ....|.+ ...+.+++.. +.||+-.+ .
T Consensus 198 ~----------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~--~------------ 253 (394)
T 3b7f_A 198 S----------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH--C------------ 253 (394)
T ss_dssp T----------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET--T------------
T ss_pred C----------CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC--C------------
Confidence 1 23677766778899885421 1111221 2234444442 56666321 1
Q ss_pred ceeeeEEEEeCCCCeEEEeecCCCCCCC--ceeeEEEEE---CCeEEEe
Q 006384 269 IIHSDLWSLDPRTWEWSKVKKIGMPPGP--RAGFSMCVH---KKRALLF 312 (647)
Q Consensus 269 ~~~~dv~~yd~~t~~W~~v~~~g~~P~~--R~~~s~~~~---~~~iyif 312 (647)
.|++.+-...+|+.+... .|.. ..++++++. .+.||+.
T Consensus 254 ----gl~~s~D~G~tW~~~~~~--l~~~~~~~~~~i~~~p~~~~~l~~~ 296 (394)
T 3b7f_A 254 ----GIYRMDRREGVWKRIGDA--MPREVGDIGFPIVVHQRDPRTVWVF 296 (394)
T ss_dssp ----EEEEEETTTTEEECGGGG--SCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred ----eEEEeCCCCCcceECCCC--CCCCCccceEEEEECCCCCCEEEEE
Confidence 277888888999998641 2321 334444443 3567765
No 184
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=89.76 E-value=3.5 Score=42.28 Aligned_cols=150 Identities=12% Similarity=0.031 Sum_probs=74.7
Q ss_pred CEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCC----cc-eeEEEEE-C-CEEEEEecccCCCCceee
Q 006384 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP----RS-GHRMVLY-K-HKIIVFGGFYDTLREVRY 207 (647)
Q Consensus 135 ~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~----R~-~h~~~~~-~-~~lyv~GG~~~~~~~~~~ 207 (647)
+.+++.|+.. ..+.+||+.+......-. .+.. .. -.+++.. + ..+++.|+..+.
T Consensus 178 ~~~l~~~~~d-----------g~v~iwd~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~------ 238 (416)
T 2pm9_A 178 AHVFASAGSS-----------NFASIWDLKAKKEVIHLS--YTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN------ 238 (416)
T ss_dssp TTEEEEESSS-----------SCEEEEETTTTEEEEEEC--CCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS------
T ss_pred CcEEEEEcCC-----------CCEEEEECCCCCcceEEe--ccccccccCCceEEEEECCCCCCEEEEEECCCC------
Confidence 5677777743 458899998876543322 1211 12 2223333 2 356777664321
Q ss_pred eCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEE
Q 006384 208 YNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS 285 (647)
Q Consensus 208 ~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~ 285 (647)
...+.+||+.+..-. +.... ......-.+++.. ++.+++.|+.++. +.+||+.+.+-.
T Consensus 239 ~~~i~~~d~~~~~~~-~~~~~---~~~~~~v~~~~~s~~~~~~l~s~~~dg~----------------v~~wd~~~~~~~ 298 (416)
T 2pm9_A 239 DPSILIWDLRNANTP-LQTLN---QGHQKGILSLDWCHQDEHLLLSSGRDNT----------------VLLWNPESAEQL 298 (416)
T ss_dssp SCCCCEEETTSTTSC-SBCCC---SCCSSCEEEEEECSSCSSCEEEEESSSE----------------EEEECSSSCCEE
T ss_pred CceEEEEeCCCCCCC-cEEee---cCccCceeEEEeCCCCCCeEEEEeCCCC----------------EEEeeCCCCccc
Confidence 126788888764311 11110 0011112223332 5677788876554 778887765433
Q ss_pred EeecCCCCCCCceeeEEEEE-CC-eEEEecceeccccCccccccccCCcEEEEECCCC
Q 006384 286 KVKKIGMPPGPRAGFSMCVH-KK-RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (647)
Q Consensus 286 ~v~~~g~~P~~R~~~s~~~~-~~-~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (647)
..-.. ....-.++++. ++ .+++.|+.. +.|.+||+.+.
T Consensus 299 ~~~~~----~~~~v~~~~~s~~~~~~l~s~~~d--------------~~i~iw~~~~~ 338 (416)
T 2pm9_A 299 SQFPA----RGNWCFKTKFAPEAPDLFACASFD--------------NKIEVQTLQNL 338 (416)
T ss_dssp EEEEC----SSSCCCCEEECTTCTTEEEECCSS--------------SEEEEEESCCC
T ss_pred eeecC----CCCceEEEEECCCCCCEEEEEecC--------------CcEEEEEccCC
Confidence 22111 01111223333 34 677777753 35888888654
No 185
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=89.65 E-value=15 Score=35.40 Aligned_cols=107 Identities=9% Similarity=0.064 Sum_probs=56.5
Q ss_pred ECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCC
Q 006384 188 YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEK 267 (647)
Q Consensus 188 ~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~ 267 (647)
-++. ++.|+.. ..+.+||+.+.+-...-.. ....-.+++...+..++.|+.++.
T Consensus 194 ~~~~-~~~~~~d---------g~i~i~d~~~~~~~~~~~~------~~~~i~~~~~~~~~~l~~~~~dg~---------- 247 (313)
T 3odt_A 194 DDGH-FISCSND---------GLIKLVDMHTGDVLRTYEG------HESFVYCIKLLPNGDIVSCGEDRT---------- 247 (313)
T ss_dssp ETTE-EEEEETT---------SEEEEEETTTCCEEEEEEC------CSSCEEEEEECTTSCEEEEETTSE----------
T ss_pred CCCe-EEEccCC---------CeEEEEECCchhhhhhhhc------CCceEEEEEEecCCCEEEEecCCE----------
Confidence 3666 6666642 4688999887653322111 111122333333324667766544
Q ss_pred CceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEecceeccccCccccccccCCcEEEEECCCCcEEE
Q 006384 268 GIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (647)
Q Consensus 268 ~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (647)
+.+||+.+.+....-.. +.. .-.++++. +++ ++.|+.. +.|.+||+.+.++..
T Consensus 248 ------v~iwd~~~~~~~~~~~~---~~~-~i~~~~~~~~~~-~~~~~~d--------------g~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 248 ------VRIWSKENGSLKQVITL---PAI-SIWSVDCMSNGD-IIVGSSD--------------NLVRIFSQEKSRWAS 301 (313)
T ss_dssp ------EEEECTTTCCEEEEEEC---SSS-CEEEEEECTTSC-EEEEETT--------------SCEEEEESCGGGCCC
T ss_pred ------EEEEECCCCceeEEEec---cCc-eEEEEEEccCCC-EEEEeCC--------------CcEEEEeCCCCceee
Confidence 88899877755443321 111 12233333 455 4555532 459999998876654
No 186
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=89.64 E-value=8.4 Score=37.86 Aligned_cols=72 Identities=11% Similarity=0.084 Sum_probs=36.4
Q ss_pred CEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCC--CeEEEeecCCCCCCCceeeEEEEE-CCeEEEecceeccccCc
Q 006384 246 DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT--WEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKG 322 (647)
Q Consensus 246 ~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t--~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~ 322 (647)
+.+++.|+.++. +.++|+.+ ..|........ .....-.+++.. ++.+++.||.+
T Consensus 219 ~~~las~s~D~~----------------v~iWd~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~las~~~D------ 275 (297)
T 2pm7_B 219 RSYMASVSQDRT----------------CIIWTQDNEQGPWKKTLLKEE-KFPDVLWRASWSLSGNVLALSGGD------ 275 (297)
T ss_dssp SEEEEEEETTSC----------------EEEEEESSTTSCCEEEESSSS-CCSSCEEEEEECSSSCCEEEEETT------
T ss_pred ceEEEEEECCCc----------------EEEEEeCCCCCccceeeeecc-cCCCcEEEEEECCCCCEEEEEcCC------
Confidence 477888887655 55566543 34543321100 111122233333 56677777643
Q ss_pred cccccccCCcEEEEECC-CCcEEEeEe
Q 006384 323 DVIMSLFLNELYGFQLD-NHRWYPLEL 348 (647)
Q Consensus 323 ~~~~~~~~ndl~~yd~~-t~~W~~l~~ 348 (647)
+.|.+|++. .+.|..+..
T Consensus 276 --------~~v~lw~~~~~g~w~~~~~ 294 (297)
T 2pm7_B 276 --------NKVTLWKENLEGKWEPAGE 294 (297)
T ss_dssp --------SCEEEEEECTTSCEEEC--
T ss_pred --------CcEEEEEECCCCcEEeccc
Confidence 346677765 457887654
No 187
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=89.63 E-value=15 Score=41.31 Aligned_cols=195 Identities=12% Similarity=0.094 Sum_probs=97.1
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCC--CccccccCcEEEEECCCCcE--EEcccC
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPN--QERFHHYKDFWMLDLKTNQW--EQLNLK 174 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~--~~~~~~~~dv~~yD~~t~~W--~~~~~~ 174 (647)
..++++|+.+++... ....+... +..+.+ +++.++++....... .........||++++.+..- ..+..
T Consensus 147 ~~i~v~dl~tg~~~~--~~~~~~~~--~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~- 221 (695)
T 2bkl_A 147 AVLHVIDVDSGEWSK--VDVIEGGK--YATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE- 221 (695)
T ss_dssp CEEEEEETTTCCBCS--SCCBSCCT--TCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEEC-
T ss_pred EEEEEEECCCCCCcC--CcccCccc--ccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEe-
Confidence 478999999887531 11111111 122333 455555554322100 00012346799999987753 22222
Q ss_pred CCCCC-cceeEEEE-ECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEe
Q 006384 175 GCPSP-RSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYG 252 (647)
Q Consensus 175 ~~P~~-R~~h~~~~-~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~G 252 (647)
.+.. ........ -+++.++++..... ..+.+|+++..+..|..+... ..... ..+..++.||+..
T Consensus 222 -~~~~~~~~~~~~~SpDG~~l~~~~~~~~-----~~~~l~~~~~~~~~~~~l~~~-----~~~~~--~~~~~~g~l~~~s 288 (695)
T 2bkl_A 222 -RTGDPTTFLQSDLSRDGKYLFVYILRGW-----SENDVYWKRPGEKDFRLLVKG-----VGAKY--EVHAWKDRFYVLT 288 (695)
T ss_dssp -CCCCTTCEEEEEECTTSCCEEEEEEETT-----TEEEEEEECTTCSSCEEEEEC-----SSCCE--EEEEETTEEEEEE
T ss_pred -cCCCCEEEEEEEECCCCCEEEEEEeCCC-----CceEEEEEcCCCCceEEeecC-----CCceE--EEEecCCcEEEEE
Confidence 1221 22222222 24554455443221 245788888878888888654 11111 2222455566654
Q ss_pred cccCCCCCcccCCCCCceeeeEEEEeCCCCe---EEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCcccccccc
Q 006384 253 GYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE---WSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLF 329 (647)
Q Consensus 253 G~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~---W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~ 329 (647)
.... ....++++|+.+.. |+.+.... + ...-..+++.+++|++......
T Consensus 289 ~~~~-------------~~~~l~~~d~~~~~~~~~~~l~~~~--~-~~~l~~~~~~~~~lv~~~~~dg------------ 340 (695)
T 2bkl_A 289 DEGA-------------PRQRVFEVDPAKPARASWKEIVPED--S-SASLLSVSIVGGHLSLEYLKDA------------ 340 (695)
T ss_dssp CTTC-------------TTCEEEEEBTTBCSGGGCEEEECCC--S-SCEEEEEEEETTEEEEEEEETT------------
T ss_pred CCCC-------------CCCEEEEEeCCCCCccCCeEEecCC--C-CCeEEEEEEECCEEEEEEEECC------------
Confidence 3221 12358899986654 88775421 1 1222334445888777765432
Q ss_pred CCcEEEEECCCC
Q 006384 330 LNELYGFQLDNH 341 (647)
Q Consensus 330 ~ndl~~yd~~t~ 341 (647)
...|+++++...
T Consensus 341 ~~~l~~~~~~g~ 352 (695)
T 2bkl_A 341 TSEVRVATLKGK 352 (695)
T ss_dssp EEEEEEEETTCC
T ss_pred EEEEEEEeCCCC
Confidence 345778877544
No 188
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=89.53 E-value=11 Score=42.61 Aligned_cols=123 Identities=16% Similarity=0.138 Sum_probs=70.6
Q ss_pred EEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCc--EEEcccCCC---CCC---cceeEEEEECCEEEEEecccCC
Q 006384 130 AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKGC---PSP---RSGHRMVLYKHKIIVFGGFYDT 201 (647)
Q Consensus 130 ~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~--W~~~~~~~~---P~~---R~~h~~~~~~~~lyv~GG~~~~ 201 (647)
-++.++.||+... .+.|+.||..+++ |+.-..... +.. ....+.++.+++||+...
T Consensus 73 P~v~~g~vyv~~~------------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~---- 136 (677)
T 1kb0_A 73 PVVVDGIMYVSAS------------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW---- 136 (677)
T ss_dssp CEEETTEEEEECG------------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT----
T ss_pred CEEECCEEEEECC------------CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC----
Confidence 3567999999864 1468999998874 876543110 000 112245567888888532
Q ss_pred CCceeeeCcEEEEEcCCCc--eEEecc-CCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEe
Q 006384 202 LREVRYYNDLYVFDLDQFK--WQEIKP-RFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLD 278 (647)
Q Consensus 202 ~~~~~~~~dv~~yD~~t~~--W~~v~~-~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd 278 (647)
-..|+.+|..+.+ |+.-.. .. ........+.++.++.||+..+.... .....++.||
T Consensus 137 ------dg~l~alD~~tG~~~W~~~~~~~~---~~~~~~~~~p~v~~~~v~v~~~~~~~-----------~~~g~v~a~D 196 (677)
T 1kb0_A 137 ------DGRLIALDAATGKEVWHQNTFEGQ---KGSLTITGAPRVFKGKVIIGNGGAEY-----------GVRGYITAYD 196 (677)
T ss_dssp ------TSEEEEEETTTCCEEEEEETTTTC---CSSCBCCSCCEEETTEEEECCBCTTT-----------CCBCEEEEEE
T ss_pred ------CCEEEEEECCCCCEEeeecCCcCc---CcCcccccCcEEECCEEEEEeccccc-----------CCCCEEEEEE
Confidence 2469999998765 876533 10 01111222334568888765432110 1234589999
Q ss_pred CCCC--eEEEee
Q 006384 279 PRTW--EWSKVK 288 (647)
Q Consensus 279 ~~t~--~W~~v~ 288 (647)
+.+. .|+.-.
T Consensus 197 ~~tG~~~W~~~~ 208 (677)
T 1kb0_A 197 AETGERKWRWFS 208 (677)
T ss_dssp TTTCCEEEEEES
T ss_pred CCCCcEEEEecc
Confidence 8654 587754
No 189
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=89.38 E-value=16 Score=35.25 Aligned_cols=186 Identities=8% Similarity=0.029 Sum_probs=85.6
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~ 159 (647)
++.+++.|+. + +.+.+||+.+..-...... ....-.+++.. ++.+++.|+.. ..+.
T Consensus 28 ~~~~l~s~~~--d-------g~v~vw~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~ 84 (313)
T 3odt_A 28 DDSKVASVSR--D-------GTVRLWSKDDQWLGTVVYT---GQGFLNSVCYDSEKELLLFGGKD-----------TMIN 84 (313)
T ss_dssp ETTEEEEEET--T-------SEEEEEEESSSEEEEEEEE---CSSCEEEEEEETTTTEEEEEETT-----------SCEE
T ss_pred CCCEEEEEEc--C-------CcEEEEECCCCEEEEEeec---CCccEEEEEECCCCCEEEEecCC-----------CeEE
Confidence 4556666762 2 3688888877654433221 11112223333 45666777643 3466
Q ss_pred EEECCCCc-EEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCcee
Q 006384 160 MLDLKTNQ-WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSG 238 (647)
Q Consensus 160 ~yD~~t~~-W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~ 238 (647)
.|++.... ...+.. .......-.++.+++.+++.|+.. ..+.+||.......... . ..+...
T Consensus 85 ~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~l~~~~~d---------~~i~~~d~~~~~~~~~~-~-----~~~v~~ 147 (313)
T 3odt_A 85 GVPLFATSGEDPLYT--LIGHQGNVCSLSFQDGVVISGSWD---------KTAKVWKEGSLVYNLQA-H-----NASVWD 147 (313)
T ss_dssp EEETTCCTTSCC-CE--ECCCSSCEEEEEEETTEEEEEETT---------SEEEEEETTEEEEEEEC-C-----SSCEEE
T ss_pred EEEeeecCCCCcccc--hhhcccCEEEEEecCCEEEEEeCC---------CCEEEEcCCcEEEeccc-C-----CCceeE
Confidence 66665431 111111 111122223334456666667653 35777773222222111 1 112222
Q ss_pred eeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEecceec
Q 006384 239 FQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVD 317 (647)
Q Consensus 239 ~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG~~~ 317 (647)
......++.+++.|+.++. +.+||..... ..+.. +....-.+++.. ++. ++.|+..
T Consensus 148 ~~~~~~~~~~l~~~~~d~~----------------i~i~d~~~~~-~~~~~----~~~~~i~~~~~~~~~~-~~~~~~d- 204 (313)
T 3odt_A 148 AKVVSFSENKFLTASADKT----------------IKLWQNDKVI-KTFSG----IHNDVVRHLAVVDDGH-FISCSND- 204 (313)
T ss_dssp EEEEETTTTEEEEEETTSC----------------EEEEETTEEE-EEECS----SCSSCEEEEEEEETTE-EEEEETT-
T ss_pred EEEccCCCCEEEEEECCCC----------------EEEEecCceE-EEEec----cCcccEEEEEEcCCCe-EEEccCC-
Confidence 2222225667777776654 6677733221 11111 112222333333 566 6666532
Q ss_pred cccCccccccccCCcEEEEECCCCc
Q 006384 318 MEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 318 ~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
..|.+||+.+.+
T Consensus 205 -------------g~i~i~d~~~~~ 216 (313)
T 3odt_A 205 -------------GLIKLVDMHTGD 216 (313)
T ss_dssp -------------SEEEEEETTTCC
T ss_pred -------------CeEEEEECCchh
Confidence 458999987654
No 190
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=89.19 E-value=15 Score=37.90 Aligned_cols=194 Identities=8% Similarity=0.078 Sum_probs=100.8
Q ss_pred cEEEEECCC--CeEEEecCCCCCCCcceeEEEEE---CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCC-
Q 006384 102 DLYRYDVEK--QEWKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG- 175 (647)
Q Consensus 102 dl~~yd~~~--~~W~~l~s~~~P~~R~~ha~v~~---~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~- 175 (647)
-+++|+... .+|+.+... +....-++++.. .+.||+.+..... -.-|++.+-...+|+.+....
T Consensus 32 Gl~~~~~~~~g~~W~~~~~~--~~~~~v~~i~~dp~~~~~l~~g~~~g~~--------g~gl~~s~D~G~tW~~~~~~~~ 101 (394)
T 3b7f_A 32 GAWFLASDPARRTWELRGPV--FLGHTIHHIVQDPREPERMLMAARTGHL--------GPTVFRSDDGGGNWTEATRPPA 101 (394)
T ss_dssp EEEEEEECTTSCSEEEEEEE--STTSEEEEEEECSSSTTCEEEEEEC--C--------CEEEEEESSTTSCCEECSBCCC
T ss_pred ceEEEECCCCCCCceECCcc--CCCCceEEEEECCCCCCeEEEEecCCCC--------CccEEEeCCCCCCceECCcccc
Confidence 367777655 689976421 122334444444 4678876532100 024777766778999986421
Q ss_pred CCCC--c-----cee--EEEEE----CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCC-----------
Q 006384 176 CPSP--R-----SGH--RMVLY----KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSM----------- 231 (647)
Q Consensus 176 ~P~~--R-----~~h--~~~~~----~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~----------- 231 (647)
.+.. + ..+ ++++. .+.||+.+. ..-|++.+-...+|+.+.......
T Consensus 102 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~----------~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~ 171 (394)
T 3b7f_A 102 FNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTS----------PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQD 171 (394)
T ss_dssp CCCCC----CCCCCEEEEEEECCTTSTTCEEEEEE----------TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC--
T ss_pred CCCcccccccccccceeEEEeCCCCCCCEEEEEec----------CCcEEEEcCCCCCeEECcCccCCcccccccccccc
Confidence 1211 1 111 23332 467777542 134777776778899885421000
Q ss_pred -CCCCceeeeEEEe---CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCC---CCCCC-----cee
Q 006384 232 -WPSPRSGFQFFVY---QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG---MPPGP-----RAG 299 (647)
Q Consensus 232 -~P~~R~~~s~~~~---~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g---~~P~~-----R~~ 299 (647)
.+.....+++++. .+.|||.... . -+++.+-...+|+.+.... ..|.+ ...
T Consensus 172 g~~~~~~i~~i~~d~~~~~~l~vg~~~-g----------------gl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~ 234 (394)
T 3b7f_A 172 GTPDGPKMHSILVDPRDPKHLYIGMSS-G----------------GVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDP 234 (394)
T ss_dssp --CCCCEEEEEEECTTCTTCEEEEEET-B----------------EEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCE
T ss_pred CCCCCCceeEEEECCCCCCEEEEEECC-C----------------CEEEECCCCCCceECCCCccccccCCCccccCcce
Confidence 0111222344443 3567764322 1 2677777778999885311 11211 223
Q ss_pred eEEEEEC---CeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 300 FSMCVHK---KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 300 ~s~~~~~---~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
+++++.. +.||+ |.. ..||+++-...+|..+..
T Consensus 235 ~~i~~~~~~~~~l~v-g~~---------------~gl~~s~D~G~tW~~~~~ 270 (394)
T 3b7f_A 235 HCVVQHPAAPDILYQ-QNH---------------CGIYRMDRREGVWKRIGD 270 (394)
T ss_dssp EEEEECSSSTTEEEE-EET---------------TEEEEEETTTTEEECGGG
T ss_pred eEEEECCCCCCEEEE-EcC---------------CeEEEeCCCCCcceECCC
Confidence 4444442 45655 321 238888888889988753
No 191
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=89.07 E-value=17 Score=40.97 Aligned_cols=104 Identities=10% Similarity=0.073 Sum_probs=62.5
Q ss_pred eCcEEEEECCC------C--eEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCC---cE
Q 006384 100 YGDLYRYDVEK------Q--EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN---QW 168 (647)
Q Consensus 100 ~ndl~~yd~~~------~--~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~---~W 168 (647)
.+.+|.+|+.+ . .++.+.... .. ........++.||+.+..... ...++++|+.+. .|
T Consensus 258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~~--~~-~~~~~s~dg~~l~~~s~~~~~--------~~~l~~~d~~~~~~~~~ 326 (710)
T 2xdw_A 258 VNRLWYCDLQQESNGITGILKWVKLIDNF--EG-EYDYVTNEGTVFTFKTNRHSP--------NYRLINIDFTDPEESKW 326 (710)
T ss_dssp CCEEEEEEGGGSSSSSCSSCCCEEEECSS--SS-CEEEEEEETTEEEEEECTTCT--------TCEEEEEETTSCCGGGC
T ss_pred ccEEEEEECcccccccCCccceEEeeCCC--Cc-EEEEEeccCCEEEEEECCCCC--------CCEEEEEeCCCCCcccc
Confidence 46899999876 4 688776532 11 122233347888888754221 257999999876 58
Q ss_pred EEcccCCCCCCc-ceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCc-eEEe
Q 006384 169 EQLNLKGCPSPR-SGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK-WQEI 224 (647)
Q Consensus 169 ~~~~~~~~P~~R-~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~-W~~v 224 (647)
..+.. +... .-..++.. +++|++...... ...|+++|+.+++ ...+
T Consensus 327 ~~l~~---~~~~~~~~~~~~~~~~~lv~~~~~~g-------~~~l~~~~~~~g~~~~~l 375 (710)
T 2xdw_A 327 KVLVP---EHEKDVLEWVACVRSNFLVLCYLHDV-------KNTLQLHDLATGALLKIF 375 (710)
T ss_dssp EEEEC---CCSSCEEEEEEEETTTEEEEEEEETT-------EEEEEEEETTTCCEEEEE
T ss_pred eeccC---CCCCCeEEEEEEEcCCEEEEEEEECC-------EEEEEEEECCCCCEEEec
Confidence 87754 2221 22234445 678877665432 4568999986654 3444
No 192
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=88.95 E-value=11 Score=37.20 Aligned_cols=215 Identities=9% Similarity=-0.033 Sum_probs=102.7
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCC
Q 006384 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 71 ~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~ 149 (647)
..+.+..+. ++.||+.+-. .+.+++|++. ...+.+... .. ..++++.. ++.||+....
T Consensus 47 ~egp~~~~~-g~~l~~~d~~---------~~~i~~~~~~-g~~~~~~~~---~~-~~~gl~~d~dG~l~v~~~~------ 105 (305)
T 3dr2_A 47 SEGPAWWEA-QRTLVWSDLV---------GRRVLGWRED-GTVDVLLDA---TA-FTNGNAVDAQQRLVHCEHG------ 105 (305)
T ss_dssp EEEEEEEGG-GTEEEEEETT---------TTEEEEEETT-SCEEEEEES---CS-CEEEEEECTTSCEEEEETT------
T ss_pred ccCCeEeCC-CCEEEEEECC---------CCEEEEEeCC-CCEEEEeCC---CC-ccceeeECCCCCEEEEECC------
Confidence 344555552 3557777642 2468899984 445544321 11 12223322 5678876421
Q ss_pred ccccccCcEEEEECCCCcEEEcccCCC--CCCcceeEEEEECCEEEEE----ecccC---CC-CceeeeCcEEEEEcCCC
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQLNLKGC--PSPRSGHRMVLYKHKIIVF----GGFYD---TL-REVRYYNDLYVFDLDQF 219 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~~~--P~~R~~h~~~~~~~~lyv~----GG~~~---~~-~~~~~~~dv~~yD~~t~ 219 (647)
...|++|++. .+...+..... +..+....++--++.||+. |-... .. ....-...|++||+.+.
T Consensus 106 -----~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g 179 (305)
T 3dr2_A 106 -----RRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS 179 (305)
T ss_dssp -----TTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC
T ss_pred -----CCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC
Confidence 1468889886 66665543110 1111122222236788885 32210 00 00001357999999888
Q ss_pred ceEEeccCCCCCCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCc
Q 006384 220 KWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPR 297 (647)
Q Consensus 220 ~W~~v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R 297 (647)
+++.+. . . ..+ .+++.. +..||+....... .....+++|++..............+. .
T Consensus 180 ~~~~~~-~--~--~~p---~gl~~spdg~~lyv~~~~~~~-----------~~~~~i~~~~~~~~~l~~~~~~~~~~~-~ 239 (305)
T 3dr2_A 180 PLQRMA-D--L--DHP---NGLAFSPDEQTLYVSQTPEQG-----------HGSVEITAFAWRDGALHDRRHFASVPD-G 239 (305)
T ss_dssp CCEEEE-E--E--SSE---EEEEECTTSSEEEEEECCC--------------CCCEEEEEEEETTEEEEEEEEECCSS-S
T ss_pred cEEEEe-c--C--CCC---cceEEcCCCCEEEEEecCCcC-----------CCCCEEEEEEecCCCccCCeEEEECCC-C
Confidence 887765 2 0 111 233333 3357776532110 012458888876554322111100010 0
Q ss_pred eeeEEEEE-CCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 298 AGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 298 ~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
.-.++++- ++.||+..+ +.|++|++....-..+..
T Consensus 240 ~pdgi~~d~~G~lwv~~~----------------~gv~~~~~~g~~~~~~~~ 275 (305)
T 3dr2_A 240 LPDGFCVDRGGWLWSSSG----------------TGVCVFDSDGQLLGHIPT 275 (305)
T ss_dssp CCCSEEECTTSCEEECCS----------------SEEEEECTTSCEEEEEEC
T ss_pred CCCeEEECCCCCEEEecC----------------CcEEEECCCCCEEEEEEC
Confidence 11123332 466666542 238999997665555554
No 193
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=88.92 E-value=19 Score=35.39 Aligned_cols=181 Identities=8% Similarity=-0.043 Sum_probs=89.4
Q ss_pred cceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCC-eEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCC
Q 006384 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ-EWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSP 147 (647)
Q Consensus 70 ~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~-~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~ 147 (647)
..+.+.+.| ++.||+.+. +.++.||+... .|+.-.. .....+++... ++.+++.....
T Consensus 38 ~~~~~~~~p--dG~ilvs~~-----------~~V~~~d~~G~~~W~~~~~----~~~~~~~~~~~~dG~~lv~~~~~--- 97 (276)
T 3no2_A 38 ECNSVAATK--AGEILFSYS-----------KGAKMITRDGRELWNIAAP----AGCEMQTARILPDGNALVAWCGH--- 97 (276)
T ss_dssp CCCEEEECT--TSCEEEECB-----------SEEEEECTTSCEEEEEECC----TTCEEEEEEECTTSCEEEEEEST---
T ss_pred CCcCeEECC--CCCEEEeCC-----------CCEEEECCCCCEEEEEcCC----CCccccccEECCCCCEEEEecCC---
Confidence 345666776 677777332 35899998433 4664321 11223344433 45555553310
Q ss_pred CCccccccCcEEEEECCCC-cEEEcccCCCCCC--cceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCC-CceEE
Q 006384 148 NQERFHHYKDFWMLDLKTN-QWEQLNLKGCPSP--RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ-FKWQE 223 (647)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~-~W~~~~~~~~P~~--R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t-~~W~~ 223 (647)
...++.||+... .|+.-.....+.+ .........++.+++.... ...|..||+.- ..|+.
T Consensus 98 -------~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~---------~~~v~~~d~~G~~~w~~ 161 (276)
T 3no2_A 98 -------PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA---------TSEVREIAPNGQLLNSV 161 (276)
T ss_dssp -------TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT---------TTEEEEECTTSCEEEEE
T ss_pred -------CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC---------CCEEEEECCCCCEEEEE
Confidence 135778887544 2432211111111 1112233345555554331 24688999872 23654
Q ss_pred eccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCC--CeEEEeecCCCCCCCce--
Q 006384 224 IKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT--WEWSKVKKIGMPPGPRA-- 298 (647)
Q Consensus 224 v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t--~~W~~v~~~g~~P~~R~-- 298 (647)
-... .| +++... ++.++|.+.... .+..||+.+ ..|+.-... .+..|.
T Consensus 162 ~~~~----~~-----~~~~~~~~g~~~v~~~~~~----------------~v~~~d~~tG~~~w~~~~~~--~~~~~l~~ 214 (276)
T 3no2_A 162 KLSG----TP-----FSSAFLDNGDCLVACGDAH----------------CFVQLNLESNRIVRRVNAND--IEGVQLFF 214 (276)
T ss_dssp ECSS----CC-----CEEEECTTSCEEEECBTTS----------------EEEEECTTTCCEEEEEEGGG--SBSCCCSE
T ss_pred ECCC----Cc-----cceeEcCCCCEEEEeCCCC----------------eEEEEeCcCCcEEEEecCCC--CCCccccc
Confidence 3321 12 223334 677777765432 288999874 467765321 122222
Q ss_pred eeEEEEE-CCeEEEec
Q 006384 299 GFSMCVH-KKRALLFG 313 (647)
Q Consensus 299 ~~s~~~~-~~~iyifG 313 (647)
-.++++. ++.+||..
T Consensus 215 ~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 215 VAQLFPLQNGGLYICN 230 (276)
T ss_dssp EEEEEECTTSCEEEEE
T ss_pred cccceEcCCCCEEEEe
Confidence 2233333 77888775
No 194
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=88.91 E-value=0.68 Score=47.31 Aligned_cols=151 Identities=13% Similarity=0.100 Sum_probs=72.1
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcE
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv 211 (647)
++.++++|+.. ..+.+||+.+..|..+... ......-.++.+ ++.+++.|+.+ ..+
T Consensus 22 ~g~~l~~~~~d-----------~~i~iw~~~~~~~~~~~~~--~~h~~~v~~~~~s~~~~~l~s~s~d---------~~v 79 (377)
T 3dwl_C 22 QRTEFVTTTAT-----------NQVELYEQDGNGWKHARTF--SDHDKIVTCVDWAPKSNRIVTCSQD---------RNA 79 (377)
T ss_dssp SSSEEECCCSS-----------SCBCEEEEETTEEEECCCB--CCCSSCEEEEEECTTTCCEEEEETT---------SSE
T ss_pred CCCEEEEecCC-----------CEEEEEEccCCceEEEEEE--ecCCceEEEEEEeCCCCEEEEEeCC---------CeE
Confidence 45566666643 3466788888888776652 222222222333 45677777753 358
Q ss_pred EEEEcCCCc-eEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCe-EEEee
Q 006384 212 YVFDLDQFK-WQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE-WSKVK 288 (647)
Q Consensus 212 ~~yD~~t~~-W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~-W~~v~ 288 (647)
.+||+.+.. |..+.... .....-.+++.. ++.+++.|+.++. +.+||+.+.. |..+.
T Consensus 80 ~vwd~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~----------------i~iwd~~~~~~~~~~~ 139 (377)
T 3dwl_C 80 YVYEKRPDGTWKQTLVLL----RLNRAATFVRWSPNEDKFAVGSGARV----------------ISVCYFEQENDWWVSK 139 (377)
T ss_dssp EEC------CCCCEEECC----CCSSCEEEEECCTTSSCCEEEESSSC----------------EEECCC-----CCCCE
T ss_pred EEEEcCCCCceeeeeEec----ccCCceEEEEECCCCCEEEEEecCCe----------------EEEEEECCcccceeee
Confidence 888888766 54433321 111112222222 5667777776554 6677766543 32222
Q ss_pred cCCCCCCCceeeEEEEE-CCeEEEecceeccccCccccccccCCcEEEEECCCC
Q 006384 289 KIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (647)
Q Consensus 289 ~~g~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (647)
.... +....-.++++. ++.+++.|+.. ..|.+||+.+.
T Consensus 140 ~~~~-~h~~~v~~~~~~~~~~~l~~~~~d--------------~~i~iwd~~~~ 178 (377)
T 3dwl_C 140 HLKR-PLRSTILSLDWHPNNVLLAAGCAD--------------RKAYVLSAYVR 178 (377)
T ss_dssp EECS-SCCSCEEEEEECTTSSEEEEEESS--------------SCEEEEEECCS
T ss_pred Eeec-ccCCCeEEEEEcCCCCEEEEEeCC--------------CEEEEEEEEec
Confidence 2110 111222233333 56677777643 34888887644
No 195
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=88.73 E-value=21 Score=35.86 Aligned_cols=175 Identities=10% Similarity=0.070 Sum_probs=88.9
Q ss_pred CCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEE
Q 006384 109 EKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVL 187 (647)
Q Consensus 109 ~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~ 187 (647)
...+|+.+..+ ......++... .+.+|++|-. ..+++-.-.-.+|+.+.............++.
T Consensus 23 ~g~~W~~~~~~---~~~~~~~v~~~~~~~~~~~G~~------------g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~ 87 (327)
T 2xbg_A 23 DYNPWEAIQLP---TTATILDMSFIDRHHGWLVGVN------------ATLMETRDGGQTWEPRTLVLDHSDYRFNSVSF 87 (327)
T ss_dssp SSCCEEEEECS---CSSCEEEEEESSSSCEEEEETT------------TEEEEESSTTSSCEECCCCCSCCCCEEEEEEE
T ss_pred CCCCceEeecC---CCCcEEEEEECCCCcEEEEcCC------------CeEEEeCCCCCCCeECCCCCCCCCccEEEEEe
Confidence 45689988642 22233333333 4678886531 22444333345899986521111222334444
Q ss_pred ECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEE-eCCEEEEEecccCCCCCcccCCC
Q 006384 188 YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFV-YQDEVFLYGGYSKEVSTDKNQSE 266 (647)
Q Consensus 188 ~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~-~~~~Iyv~GG~~~~~~~~~~~~~ 266 (647)
..+.+|+.|.. ..+++-.=.-..|+.+.... +.+-..+.++. -++.+|+.|.. ..
T Consensus 88 ~~~~~~~~g~~----------g~i~~S~DgG~tW~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~-g~--------- 143 (327)
T 2xbg_A 88 QGNEGWIVGEP----------PIMLHTTDGGQSWSQIPLDP----KLPGSPRLIKALGNGSAEMITNV-GA--------- 143 (327)
T ss_dssp ETTEEEEEEET----------TEEEEESSTTSSCEECCCCT----TCSSCEEEEEEEETTEEEEEETT-CC---------
T ss_pred cCCeEEEEECC----------CeEEEECCCCCCceECcccc----CCCCCeEEEEEECCCCEEEEeCC-cc---------
Confidence 57788887531 12333222246899986531 11111233333 36788887742 11
Q ss_pred CCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEecceeccccCccccccccCCcEEEEECC-CCcEE
Q 006384 267 KGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD-NHRWY 344 (647)
Q Consensus 267 ~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~-t~~W~ 344 (647)
+++-.=...+|+.+.. |.+...+++++. ++.+|++|-. ..+|+-.-. ...|.
T Consensus 144 -------v~~S~DgG~tW~~~~~----~~~~~~~~~~~~~~~~~~~~g~~---------------G~~~~S~d~gG~tW~ 197 (327)
T 2xbg_A 144 -------IYRTKDSGKNWQALVQ----EAIGVMRNLNRSPSGEYVAVSSR---------------GSFYSTWEPGQTAWE 197 (327)
T ss_dssp -------EEEESSTTSSEEEEEC----SCCCCEEEEEECTTSCEEEEETT---------------SSEEEEECTTCSSCE
T ss_pred -------EEEEcCCCCCCEEeec----CCCcceEEEEEcCCCcEEEEECC---------------CcEEEEeCCCCCcee
Confidence 4443334668999864 222234445444 4566665521 225554433 46898
Q ss_pred EeEe
Q 006384 345 PLEL 348 (647)
Q Consensus 345 ~l~~ 348 (647)
.+..
T Consensus 198 ~~~~ 201 (327)
T 2xbg_A 198 PHNR 201 (327)
T ss_dssp EEEC
T ss_pred ECCC
Confidence 8754
No 196
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=88.66 E-value=2 Score=51.90 Aligned_cols=189 Identities=10% Similarity=0.075 Sum_probs=94.8
Q ss_pred EEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCcc
Q 006384 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQER 151 (647)
Q Consensus 74 ~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~ 151 (647)
+++.| ++.++++|+. + +.++.|+..+.......... ......+.+ ++..++.||..
T Consensus 967 ~~~sp--~g~~l~~g~~--~-------g~i~i~d~~~~~~~~~~~~h----~~~v~~l~~s~dg~~l~s~~~d------- 1024 (1249)
T 3sfz_A 967 CCLSP--HLEYVAFGDE--D-------GAIKIIELPNNRVFSSGVGH----KKAVRHIQFTADGKTLISSSED------- 1024 (1249)
T ss_dssp EEECT--TSSEEEEEET--T-------SCCEEEETTTTSCEEECCCC----SSCCCCEEECSSSSCEEEECSS-------
T ss_pred EEEcC--CCCEEEEEcC--C-------CCEEEEEcCCCceeeecccC----CCceEEEEECCCCCEEEEEcCC-------
Confidence 34444 5666677762 2 35778888776544332211 111112222 45666777642
Q ss_pred ccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCC
Q 006384 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSM 231 (647)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~ 231 (647)
..+.+||+.+.....+.. ....-..++...+..++.|+.. ..+.+||+.+.+-...-..
T Consensus 1025 ----g~i~vwd~~~~~~~~~~~----~~~~v~~~~~~~~~~l~~~~~d---------g~v~vwd~~~~~~~~~~~~---- 1083 (1249)
T 3sfz_A 1025 ----SVIQVWNWQTGDYVFLQA----HQETVKDFRLLQDSRLLSWSFD---------GTVKVWNVITGRIERDFTC---- 1083 (1249)
T ss_dssp ----SBEEEEETTTTEEECCBC----CSSCEEEEEECSSSEEEEEESS---------SEEEEEETTTTCCCEEEEC----
T ss_pred ----CEEEEEECCCCceEEEec----CCCcEEEEEEcCCCcEEEEECC---------CcEEEEECCCCceeEEEcc----
Confidence 458899998887654332 1122223333344444555542 4688899887654322111
Q ss_pred CCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE--CCe
Q 006384 232 WPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKR 308 (647)
Q Consensus 232 ~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~--~~~ 308 (647)
.... -.+++.. ++.+++.|+.++. +.+||+.+.. .+.. .........++.+ ++.
T Consensus 1084 -~~~~-v~~~~~s~d~~~l~s~s~d~~----------------v~iwd~~~~~--~~~~---l~~h~~~v~~~~~s~dg~ 1140 (1249)
T 3sfz_A 1084 -HQGT-VLSCAISSDATKFSSTSADKT----------------AKIWSFDLLS--PLHE---LKGHNGCVRCSAFSLDGI 1140 (1249)
T ss_dssp -CSSC-CCCEEECSSSSSCEEECCSSC----------------CCEECSSSSS--CSBC---CCCCSSCEEEEEECSSSS
T ss_pred -cCCc-EEEEEECCCCCEEEEEcCCCc----------------EEEEECCCcc--eeee---eccCCCcEEEEEECCCCC
Confidence 1111 1122222 6667777776654 5566665432 1111 1111111222222 677
Q ss_pred EEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 309 ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 309 iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
+++.|+.+ ..|.+||+.+.+
T Consensus 1141 ~lat~~~d--------------g~i~vwd~~~~~ 1160 (1249)
T 3sfz_A 1141 LLATGDDN--------------GEIRIWNVSDGQ 1160 (1249)
T ss_dssp EEEEEETT--------------SCCCEEESSSSC
T ss_pred EEEEEeCC--------------CEEEEEECCCCc
Confidence 77877643 347888887654
No 197
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=88.66 E-value=1.9 Score=45.37 Aligned_cols=22 Identities=9% Similarity=0.019 Sum_probs=15.1
Q ss_pred CCEEEEEecccCCCCceeeeCcEEEEEcCCC
Q 006384 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (647)
Q Consensus 189 ~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (647)
++.+++.|+.. ..|.+||+.+.
T Consensus 243 ~~~~l~s~~~d---------g~i~i~d~~~~ 264 (430)
T 2xyi_A 243 HESLFGSVADD---------QKLMIWDTRNN 264 (430)
T ss_dssp CTTEEEEEETT---------SEEEEEETTCS
T ss_pred CCCEEEEEeCC---------CeEEEEECCCC
Confidence 45677777642 46889998865
No 198
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=88.63 E-value=12 Score=36.79 Aligned_cols=109 Identities=11% Similarity=0.070 Sum_probs=53.6
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCc-ceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCC
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPR-SAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCP 177 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R-~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P 177 (647)
+.++.||+.+.+....... +... ..+.++.. +..+|+.++. -..+++||+.+.+-...-..+.+
T Consensus 11 ~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~~s~dg~~l~v~~~~-----------~~~v~~~d~~~~~~~~~~~~~~~ 77 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVITI--ADAGPTPMVPMVAPGGRIAYATVNK-----------SESLVKIDLVTGETLGRIDLSTP 77 (337)
T ss_dssp TEEEEEETTTTEEEEEEEC--TTCTTCCCCEEECTTSSEEEEEETT-----------TTEEEEEETTTCCEEEEEECCBT
T ss_pred CeEEEEECCCCcEEEEEEc--CCCCCCccceEEcCCCCEEEEEeCC-----------CCeEEEEECCCCCeEeeEEcCCc
Confidence 4788999988765432211 1110 11223332 3478887642 24699999988775432221101
Q ss_pred C--CcceeEEEEE-C-CEEEEEecccCCCCceee---eCcEEEEEcCCCceEE
Q 006384 178 S--PRSGHRMVLY-K-HKIIVFGGFYDTLREVRY---YNDLYVFDLDQFKWQE 223 (647)
Q Consensus 178 ~--~R~~h~~~~~-~-~~lyv~GG~~~~~~~~~~---~~dv~~yD~~t~~W~~ 223 (647)
. ...-+.+++. + ++||+......... ..+ .+.+++||+.+.+...
T Consensus 78 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~-~~~~~~~~~i~v~d~~~~~~~~ 129 (337)
T 1pby_B 78 EERVKSLFGAALSPDGKTLAIYESPVRLEL-THFEVQPTRVALYDAETLSRRK 129 (337)
T ss_dssp TEEEECTTCEEECTTSSEEEEEEEEEEECS-SCEEECCCEEEEEETTTTEEEE
T ss_pred ccccccccceEECCCCCEEEEEeccccccc-ccccccCceEEEEECCCCcEEE
Confidence 0 0011223333 3 36776642110000 001 3689999998876543
No 199
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=88.59 E-value=19 Score=40.74 Aligned_cols=150 Identities=13% Similarity=0.052 Sum_probs=82.0
Q ss_pred eCcEEEEECCCC--e-EEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCC--CcEEEcccC
Q 006384 100 YGDLYRYDVEKQ--E-WKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT--NQWEQLNLK 174 (647)
Q Consensus 100 ~ndl~~yd~~~~--~-W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t--~~W~~~~~~ 174 (647)
.+.+|.+|+.+. . |+.+.... ... ...+...++.||+...... ....++++|+.+ ..|..+.+.
T Consensus 293 ~~~l~~~d~~~~~~~~~~~l~~~~--~~~-~~~~~~dg~~l~~~s~~~~--------~~~~l~~~d~~~~~~~~~~l~~~ 361 (741)
T 1yr2_A 293 VNTVHVARVTNGKIGPVTALIPDL--KAQ-WDFVDGVGDQLWFVSGDGA--------PLKKIVRVDLSGSTPRFDTVVPE 361 (741)
T ss_dssp CCEEEEEEEETTEECCCEEEECSS--SSC-EEEEEEETTEEEEEECTTC--------TTCEEEEEECSSSSCEEEEEECC
T ss_pred cceEEEEECCCCCCcccEEecCCC--Cce-EEEEeccCCEEEEEECCCC--------CCCEEEEEeCCCCccccEEEecC
Confidence 468999999877 6 88886532 112 1222345778888764321 125699999988 579887642
Q ss_pred CCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CC-EEEEEe
Q 006384 175 GCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QD-EVFLYG 252 (647)
Q Consensus 175 ~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~-~Iyv~G 252 (647)
. . ..-......+++|++...... ...++++++....-..+.. |....-..+... ++ .|++..
T Consensus 362 ~-~--~~l~~~~~~~~~lv~~~~~dg-------~~~l~~~~~~g~~~~~l~~------~~~~~v~~~~~s~d~~~l~~~~ 425 (741)
T 1yr2_A 362 S-K--DNLESVGIAGNRLFASYIHDA-------KSQVLAFDLDGKPAGAVSL------PGIGSASGLSGRPGDRHAYLSF 425 (741)
T ss_dssp C-S--SEEEEEEEEBTEEEEEEEETT-------EEEEEEEETTSCEEEECBC------SSSCEEEEEECCBTCSCEEEEE
T ss_pred C-C--CeEEEEEEECCEEEEEEEECC-------EEEEEEEeCCCCceeeccC------CCCeEEEEeecCCCCCEEEEEE
Confidence 1 1 111223344788887765432 4568888875543333321 211111112111 22 333322
Q ss_pred cccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeec
Q 006384 253 GYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (647)
Q Consensus 253 G~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~ 289 (647)
.+. ..-..++.||+.+...+.+..
T Consensus 426 -ss~------------~~P~~i~~~d~~tg~~~~l~~ 449 (741)
T 1yr2_A 426 -SSF------------TQPATVLALDPATAKTTPWEP 449 (741)
T ss_dssp -EET------------TEEEEEEEEETTTTEEEECSC
T ss_pred -cCC------------CCCCEEEEEECCCCcEEEEec
Confidence 111 223568999998887766643
No 200
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=88.29 E-value=22 Score=35.47 Aligned_cols=65 Identities=3% Similarity=-0.140 Sum_probs=39.3
Q ss_pred CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCC
Q 006384 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEK 267 (647)
Q Consensus 189 ~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~ 267 (647)
++.+++.|+.+ ..+.+||+.+.+-..+... .....-.+++.. ++.+++.|+.++.
T Consensus 138 ~~~~l~s~s~d---------g~i~~wd~~~~~~~~~~~~-----~~~~~i~~~~~~pdg~~lasg~~dg~---------- 193 (343)
T 3lrv_A 138 NTEYFIWADNR---------GTIGFQSYEDDSQYIVHSA-----KSDVEYSSGVLHKDSLLLALYSPDGI---------- 193 (343)
T ss_dssp -CCEEEEEETT---------CCEEEEESSSSCEEEEECC-----CSSCCCCEEEECTTSCEEEEECTTSC----------
T ss_pred CCCEEEEEeCC---------CcEEEEECCCCcEEEEEec-----CCCCceEEEEECCCCCEEEEEcCCCE----------
Confidence 45667777753 4688999988776444322 111112233333 6778888887665
Q ss_pred CceeeeEEEEeCCCCe
Q 006384 268 GIIHSDLWSLDPRTWE 283 (647)
Q Consensus 268 ~~~~~dv~~yd~~t~~ 283 (647)
+.+||+.+..
T Consensus 194 ------i~iwd~~~~~ 203 (343)
T 3lrv_A 194 ------LDVYNLSSPD 203 (343)
T ss_dssp ------EEEEESSCTT
T ss_pred ------EEEEECCCCC
Confidence 7888887654
No 201
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=88.16 E-value=12 Score=35.89 Aligned_cols=104 Identities=13% Similarity=0.294 Sum_probs=55.1
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCe-EE--EecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCcccccc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE-WK--VISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHY 155 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~-W~--~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~ 155 (647)
++++|+|=|. .+|+++..... .. .+...-.-.|..--++... ++++|+|-|
T Consensus 40 ~g~~~fFkg~-----------~~Wr~~~~~~~~~~P~~I~~~wp~lp~~IDAA~~~~~~~k~yfFkG------------- 95 (218)
T 1gen_A 40 RGEIFFFKDR-----------FIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAG------------- 95 (218)
T ss_dssp TTEEEEEETT-----------EEEEESSTTSCCEEEEEGGGTCTTSCSCCSEEEEETTTTEEEEEET-------------
T ss_pred CCcEEEEECC-----------EEEEEeCCCCccCCCEEHHHhcCCCCCCccEEEEECCCCEEEEEeC-------------
Confidence 6889999883 56666654321 11 2222110112222233333 589999987
Q ss_pred CcEEEEECCCCc---EEEcccCCCCCC-cceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCC
Q 006384 156 KDFWMLDLKTNQ---WEQLNLKGCPSP-RSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (647)
Q Consensus 156 ~dv~~yD~~t~~---W~~~~~~~~P~~-R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (647)
+.+|+|+..+.. =..+...+.|.. ..-.++..+ ++++|+|-| +..|+||..+.
T Consensus 96 ~~yW~y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG-----------~~ywr~d~~~~ 154 (218)
T 1gen_A 96 NEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG-----------DKFWRYNEVKK 154 (218)
T ss_dssp TEEEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEET-----------TEEEEEETTTT
T ss_pred CEEEEEcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEEC-----------CEEEEEECccc
Confidence 568999852110 012222233332 122334443 689999987 35788998765
No 202
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=87.97 E-value=28 Score=36.32 Aligned_cols=209 Identities=10% Similarity=0.034 Sum_probs=109.7
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCC
Q 006384 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPN 148 (647)
Q Consensus 71 ~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~ 148 (647)
-+.+++.+ ++.||+.... -+.+++||+.++.-..+.... ...+ ++.. ++.||+......
T Consensus 133 P~~la~d~--~g~lyv~d~~---------~~~I~~id~~~g~~~~~~~~~----~~~~-ia~~~~g~~l~~~d~~~~--- 193 (409)
T 3hrp_A 133 MWGIAAVG--NNTVLAYQRD---------DPRVRLISVDDNKVTTVHPGF----KGGK-PAVTKDKQRVYSIGWEGT--- 193 (409)
T ss_dssp EEEEEECS--TTEEEEEETT---------TTEEEEEETTTTEEEEEEETC----CBCB-CEECTTSSEEEEEBSSTT---
T ss_pred ceEEEEeC--CCCEEEEecC---------CCcEEEEECCCCEEEEeeccC----CCCc-eeEecCCCcEEEEecCCC---
Confidence 34556655 6789988761 147899999988776554321 1122 2222 456777654211
Q ss_pred CccccccCcEEEEECCCCc-EEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEec
Q 006384 149 QERFHHYKDFWMLDLKTNQ-WEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (647)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~-W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (647)
..+++|++.... ...+.....+....-+.+++. ++.||+... ...+++||+.+.....+.
T Consensus 194 -------~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~----------~~~I~~~d~~~~~~~~~~ 256 (409)
T 3hrp_A 194 -------HTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDS----------NKNFGRFNVKTQEVTLIK 256 (409)
T ss_dssp -------CEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECT----------TCEEEEEETTTCCEEEEE
T ss_pred -------ceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC----------CCcEEEEECCCCCEEEEe
Confidence 268999987543 223311111112222334443 578998321 246999999887755552
Q ss_pred cCCCCCCCCCcee-e-eEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCC------
Q 006384 226 PRFGSMWPSPRSG-F-QFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPG------ 295 (647)
Q Consensus 226 ~~~~~~~P~~R~~-~-s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~------ 295 (647)
..... ...... + .+++. ++.||+..... +.|++|++... ...+...+..+.
T Consensus 257 ~~~~~--g~~~~~P~~~ia~~p~~g~lyv~d~~~----------------~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~ 317 (409)
T 3hrp_A 257 QLELS--GSLGTNPGPYLIYYFVDSNFYMSDQNL----------------SSVYKITPDGE-CEWFCGSATQKTVQDGLR 317 (409)
T ss_dssp ECCCC--SCCCCSSCCEEEEETTTTEEEEEETTT----------------TEEEEECTTCC-EEEEEECTTCCSCBCEEG
T ss_pred ccccc--CCCCCCccccEEEeCCCCEEEEEeCCC----------------CEEEEEecCCC-EEEEEeCCCCCCcCCCcc
Confidence 21100 111111 1 44444 58899875433 24888887765 222322110000
Q ss_pred --C--ceeeEEEEE-CCeEEEecc-eeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 296 --P--RAGFSMCVH-KKRALLFGG-VVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 296 --~--R~~~s~~~~-~~~iyifGG-~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
. ..-.++++- ++.||+.-. . .+.|.+|++.+.....+.-
T Consensus 318 ~~~~~~~P~gia~d~dG~lyvad~~~--------------~~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 318 EEALFAQPNGMTVDEDGNFYIVDGFK--------------GYCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp GGCBCSSEEEEEECTTCCEEEEETTT--------------TCEEEEEETTTTEEEEEEE
T ss_pred cccEeCCCeEEEEeCCCCEEEEeCCC--------------CCEEEEEECCCCEEEEEeC
Confidence 0 112334443 567888743 2 2569999977776655554
No 203
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=87.88 E-value=6.4 Score=40.01 Aligned_cols=111 Identities=11% Similarity=0.108 Sum_probs=58.1
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCC
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~ 179 (647)
..++++|+.+.+-+.+... ..+..+....- ++..++|....... .....+|.+|+.+.....+.. .+..
T Consensus 168 ~~l~~~d~~~g~~~~l~~~---~~~~~~~~~sp~dg~~l~~~~~~~~~-----~~~~~l~~~d~~~~~~~~l~~--~~~~ 237 (388)
T 3pe7_A 168 CRLMRVDLKTGESTVILQE---NQWLGHPIYRPYDDSTVAFCHEGPHD-----LVDARMWLINEDGTNMRKVKT--HAEG 237 (388)
T ss_dssp EEEEEEETTTCCEEEEEEE---SSCEEEEEEETTEEEEEEEEECSCTT-----TSSCSEEEEETTSCCCEESCC--CCTT
T ss_pred ceEEEEECCCCceEEeecC---CccccccEECCCCCCEEEEEEecCCC-----CCcceEEEEeCCCCceEEeee--CCCC
Confidence 5799999998877766532 11222222222 34444443321111 113689999998877666654 1111
Q ss_pred cceeEEEEE--CCE-EEEEecccCCCCceeeeCcEEEEEcCCCceEEeccC
Q 006384 180 RSGHRMVLY--KHK-IIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (647)
Q Consensus 180 R~~h~~~~~--~~~-lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (647)
. ......+ +++ |+......+. ....++++|+.+.+-..+...
T Consensus 238 ~-~~~~~~~spdg~~l~~~~~~~~~-----~~~~l~~~d~~~g~~~~l~~~ 282 (388)
T 3pe7_A 238 E-SCTHEFWVPDGSALVYVSYLKGS-----PDRFIYSADPETLENRQLTSM 282 (388)
T ss_dssp E-EEEEEEECTTSSCEEEEEEETTC-----CCEEEEEECTTTCCEEEEEEE
T ss_pred c-ccccceECCCCCEEEEEecCCCC-----CcceEEEEecCCCceEEEEcC
Confidence 1 1112223 454 4443322111 112599999999887776554
No 204
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=87.83 E-value=5.8 Score=39.53 Aligned_cols=116 Identities=10% Similarity=0.135 Sum_probs=58.8
Q ss_pred EEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE----CCEEEEEeCCcCCCCC
Q 006384 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW----KNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 74 ~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~----~~~iyv~GG~~~~~~~ 149 (647)
+.+.| ++.+++.|+. + ..+.+||+.+.....+.... .....-..+.+ ++.+++.|+..
T Consensus 19 v~~s~--~g~~lasgs~--D-------~~v~lwd~~~~~~~~~~~l~--gH~~~V~~v~~~~~~~~~~l~s~s~D----- 80 (316)
T 3bg1_A 19 AQMDY--YGTRLATCSS--D-------RSVKIFDVRNGGQILIADLR--GHEGPVWQVAWAHPMYGNILASCSYD----- 80 (316)
T ss_dssp EEECG--GGCEEEEEET--T-------TEEEEEEEETTEEEEEEEEE--CCSSCEEEEEECCGGGSSCEEEEETT-----
T ss_pred eeEcC--CCCEEEEEeC--C-------CeEEEEEecCCCcEEEEEEc--CCCccEEEEEeCCCCCCCEEEEEECC-----
Confidence 44444 5677777772 2 35777887766543222110 00111122333 25677777643
Q ss_pred ccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--C--CEEEEEecccCCCCceeeeCcEEEEEcCCC-ceEEe
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--K--HKIIVFGGFYDTLREVRYYNDLYVFDLDQF-KWQEI 224 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~--~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~-~W~~v 224 (647)
..+.+||+.+..|..+... ......-.++.+ + +.+++.|+.+ ..+.+||+.+. .|...
T Consensus 81 ------~~v~iWd~~~~~~~~~~~~--~~h~~~V~~v~~~p~~~g~~lasgs~D---------~~i~lwd~~~~~~~~~~ 143 (316)
T 3bg1_A 81 ------RKVIIWREENGTWEKSHEH--AGHDSSVNSVCWAPHDYGLILACGSSD---------GAISLLTYTGEGQWEVK 143 (316)
T ss_dssp ------SCEEEECCSSSCCCEEEEE--CCCSSCCCEEEECCTTTCSCEEEECSS---------SCEEEEEECSSSCEEEC
T ss_pred ------CEEEEEECCCCcceEEEEc--cCCCCceEEEEECCCCCCcEEEEEcCC---------CCEEEEecCCCCCccee
Confidence 3578889888776544321 111111122223 2 4567777653 35677777664 46543
No 205
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=87.74 E-value=13 Score=44.80 Aligned_cols=150 Identities=13% Similarity=0.038 Sum_probs=78.1
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCc
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQE 150 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~ 150 (647)
++++.| ++.+++.||. + +.+.+||..+.+-...-.. ......++.+ ++.+++.|+..
T Consensus 620 ~~~~s~--~~~~l~s~~~--d-------~~i~vw~~~~~~~~~~~~~----h~~~v~~~~~s~~~~~l~s~~~d------ 678 (1249)
T 3sfz_A 620 HACFSQ--DGQRIASCGA--D-------KTLQVFKAETGEKLLDIKA----HEDEVLCCAFSSDDSYIATCSAD------ 678 (1249)
T ss_dssp EEEECT--TSSEEEEEET--T-------SCEEEEETTTCCEEEEECC----CSSCEEEEEECTTSSEEEEEETT------
T ss_pred EEEECC--CCCEEEEEeC--C-------CeEEEEECCCCCEEEEecc----CCCCEEEEEEecCCCEEEEEeCC------
Confidence 345555 5677777772 2 3688899988764432211 1112223333 45666666632
Q ss_pred cccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE----CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEecc
Q 006384 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY----KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (647)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~----~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~ 226 (647)
..+.+||+.+.+....-. .. ...-.++.+ +..+++.|+.+ ..+.+||+.+......-.
T Consensus 679 -----~~v~vwd~~~~~~~~~~~--~~--~~~v~~~~~~~~~~~~~l~sg~~d---------~~v~vwd~~~~~~~~~~~ 740 (1249)
T 3sfz_A 679 -----KKVKIWDSATGKLVHTYD--EH--SEQVNCCHFTNKSNHLLLATGSND---------FFLKLWDLNQKECRNTMF 740 (1249)
T ss_dssp -----SEEEEEETTTCCEEEEEE--CC--SSCEEEEEECSSSSCCEEEEEETT---------SCEEEEETTSSSEEEEEC
T ss_pred -----CeEEEEECCCCceEEEEc--CC--CCcEEEEEEecCCCceEEEEEeCC---------CeEEEEECCCcchhheec
Confidence 458899998876443322 11 111122233 23455555542 458889988876443221
Q ss_pred CCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCe
Q 006384 227 RFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (647)
Q Consensus 227 ~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (647)
. ....-.+++.. ++.+++.|+.++. +.+||+.+..
T Consensus 741 ~------h~~~v~~~~~sp~~~~l~s~s~dg~----------------v~vwd~~~~~ 776 (1249)
T 3sfz_A 741 G------HTNSVNHCRFSPDDELLASCSADGT----------------LRLWDVRSAN 776 (1249)
T ss_dssp C------CSSCEEEEEECSSTTEEEEEESSSE----------------EEEEEGGGTE
T ss_pred C------CCCCEEEEEEecCCCEEEEEECCCe----------------EEEEeCCCCc
Confidence 1 11111222222 5667777776544 6777776554
No 206
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=87.70 E-value=17 Score=40.76 Aligned_cols=108 Identities=8% Similarity=0.032 Sum_probs=53.9
Q ss_pred cEEEEECCC-CcEEEcccCCCCCCcc-eeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCC
Q 006384 157 DFWMLDLKT-NQWEQLNLKGCPSPRS-GHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (647)
Q Consensus 157 dv~~yD~~t-~~W~~~~~~~~P~~R~-~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (647)
.++++|+.+ ..-..+.... +.... ...+. -+++.++++...... ....|+++|+.+.+...+..........
T Consensus 264 ~l~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~-pDg~~l~~~~~~~~~----~~~~i~~~d~~~g~~~~~~~~~~~~~~~ 337 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLGK-EQDIYLARVNW-RDPQHLSFQRQSRDQ----KKLDLVEVTLASNQQRVLAHETSPTWVP 337 (741)
T ss_dssp EEEEECSSTTCCCEEECCCS-CSSEEEEEEEE-EETTEEEEEEEETTS----SEEEEEEEETTTCCEEEEEEEECSSCCC
T ss_pred EEEEEECCCCCceEEecCCC-CcceEEEEEEe-CCCCEEEEEEecccC----CeEEEEEEECCCCceEEEEEcCCCCcCC
Confidence 789999988 7755554310 11111 11222 344444444332211 2467999999998877664431100000
Q ss_pred CceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEe
Q 006384 235 PRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (647)
Q Consensus 235 ~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v 287 (647)
....++.. ++++++.+..++ ...+|.+++... +..+
T Consensus 338 --~~~~~~~spdg~~~~~~~~~g--------------~~~l~~~~~~~~-~~~l 374 (741)
T 2ecf_A 338 --LHNSLRFLDDGSILWSSERTG--------------FQHLYRIDSKGK-AAAL 374 (741)
T ss_dssp --CCSCCEECTTSCEEEEECTTS--------------SCEEEEECSSSC-EEES
T ss_pred --cCCceEECCCCeEEEEecCCC--------------ccEEEEEcCCCC-eeee
Confidence 00122222 556666655432 145888887665 5544
No 207
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=87.62 E-value=29 Score=38.67 Aligned_cols=95 Identities=9% Similarity=0.021 Sum_probs=48.0
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcceeEEEE-ECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~-~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (647)
..|.+||+.+..-...-. ....... +++. -++.+++.||.+ ..|.+||+.+.+- +... ..
T Consensus 541 ~~v~vwd~~~~~~~~~~~--~h~~~v~-~v~~spdg~~l~sg~~D---------g~i~iwd~~~~~~--~~~~-----~~ 601 (694)
T 3dm0_A 541 KTVKVWNLSNCKLRSTLA--GHTGYVS-TVAVSPDGSLCASGGKD---------GVVLLWDLAEGKK--LYSL-----EA 601 (694)
T ss_dssp SCEEEEETTTCCEEEEEC--CCSSCEE-EEEECTTSSEEEEEETT---------SBCEEEETTTTEE--EECC-----BC
T ss_pred CeEEEEECCCCcEEEEEc--CCCCCEE-EEEEeCCCCEEEEEeCC---------CeEEEEECCCCce--EEEe-----cC
Confidence 457888988765433211 1111111 2222 256777777753 3577888877643 2222 11
Q ss_pred CceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEE
Q 006384 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS 285 (647)
Q Consensus 235 ~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~ 285 (647)
...-++++...+..++.++.... +.+||+.+..-.
T Consensus 602 ~~~v~~~~~sp~~~~l~~~~~~~----------------i~iwd~~~~~~~ 636 (694)
T 3dm0_A 602 NSVIHALCFSPNRYWLCAATEHG----------------IKIWDLESKSIV 636 (694)
T ss_dssp SSCEEEEEECSSSSEEEEEETTE----------------EEEEETTTTEEE
T ss_pred CCcEEEEEEcCCCcEEEEEcCCC----------------EEEEECCCCCCh
Confidence 12233444444444555554322 677887766543
No 208
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=87.61 E-value=24 Score=38.84 Aligned_cols=124 Identities=12% Similarity=0.153 Sum_probs=69.3
Q ss_pred EEEECCEEEEEeCCcCCCCCccccccCcEEEEEC-CCC--cEEEcccCCC---CCC---cceeEEEEECCEEEEEecccC
Q 006384 130 AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDL-KTN--QWEQLNLKGC---PSP---RSGHRMVLYKHKIIVFGGFYD 200 (647)
Q Consensus 130 ~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~-~t~--~W~~~~~~~~---P~~---R~~h~~~~~~~~lyv~GG~~~ 200 (647)
-++.++.||+.... ...|+.||. .++ .|+.-..... +.. ....+.++.+++||+...
T Consensus 58 P~v~~g~vyv~~~~-----------~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--- 123 (571)
T 2ad6_A 58 PLVIGDMMYVHSAF-----------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA--- 123 (571)
T ss_dssp CEEETTEEEEECST-----------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT---
T ss_pred cEEECCEEEEEeCC-----------CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC---
Confidence 35669999998652 146899998 776 4876433110 000 112234667889888643
Q ss_pred CCCceeeeCcEEEEEcCCC--ceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEe
Q 006384 201 TLREVRYYNDLYVFDLDQF--KWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLD 278 (647)
Q Consensus 201 ~~~~~~~~~dv~~yD~~t~--~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd 278 (647)
-..|+.+|..+. .|+.-..... .......+.++.++.||+-.+.... .....++.||
T Consensus 124 -------dg~l~alD~~tG~~~W~~~~~~~~---~~~~~~~~P~v~~g~v~vg~~~~~~-----------~~~g~v~a~D 182 (571)
T 2ad6_A 124 -------NGHLLALDAKTGKINWEVEVCDPK---VGSTLTQAPFVAKDTVLMGCSGAEL-----------GVRGAVNAFD 182 (571)
T ss_dssp -------TSEEEEEETTTCCEEEEEECCCGG---GTCBCCSCCEEETTEEEEECBCGGG-----------TCCCEEEEEE
T ss_pred -------CCEEEEEECCCCCEEEEecCCCCC---ccceeccCCEEECCEEEEEecCCcc-----------CCCCEEEEEE
Confidence 246899999876 4875422100 0001122334568888765432110 1124589999
Q ss_pred CCCC--eEEEee
Q 006384 279 PRTW--EWSKVK 288 (647)
Q Consensus 279 ~~t~--~W~~v~ 288 (647)
+.+. .|+.-.
T Consensus 183 ~~tG~~~W~~~~ 194 (571)
T 2ad6_A 183 LKTGELKWRAFA 194 (571)
T ss_dssp TTTCCEEEEEES
T ss_pred CCCCcEEEEEcc
Confidence 8654 687653
No 209
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=87.51 E-value=21 Score=40.19 Aligned_cols=123 Identities=13% Similarity=0.093 Sum_probs=69.9
Q ss_pred EEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCc--EEEcccCCCC---C---CcceeEEEEECCEEEEEecccCC
Q 006384 130 AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKGCP---S---PRSGHRMVLYKHKIIVFGGFYDT 201 (647)
Q Consensus 130 ~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~--W~~~~~~~~P---~---~R~~h~~~~~~~~lyv~GG~~~~ 201 (647)
-++.++.||+... ...|+.||..+++ |+.-...... . .....+.++.+++||+...
T Consensus 62 P~v~~g~vyv~~~------------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---- 125 (668)
T 1kv9_A 62 PLFHDGVIYTSMS------------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL---- 125 (668)
T ss_dssp CEEETTEEEEEEG------------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT----
T ss_pred CEEECCEEEEECC------------CCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC----
Confidence 3567999999864 2468899988774 8764331100 0 0011234567888887532
Q ss_pred CCceeeeCcEEEEEcCCCc--eEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeC
Q 006384 202 LREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDP 279 (647)
Q Consensus 202 ~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~ 279 (647)
-..|+.||..+.+ |+.-...+. .......+.++.++.||+-.+.... .....++.||+
T Consensus 126 ------dg~l~alD~~tG~~~W~~~~~~~~---~~~~~~~~P~v~~~~v~vg~~~~~~-----------~~~g~v~a~D~ 185 (668)
T 1kv9_A 126 ------DGRLIALDAKTGKAIWSQQTTDPA---KPYSITGAPRVVKGKVIIGNGGAEY-----------GVRGFVSAYDA 185 (668)
T ss_dssp ------TSEEEEEETTTCCEEEEEECSCTT---SSCBCCSCCEEETTEEEECCBCTTT-----------CCBCEEEEEET
T ss_pred ------CCEEEEEECCCCCEeeeeccCCCC---CcceecCCCEEECCEEEEeCCCCCc-----------CCCCEEEEEEC
Confidence 2468999998765 886543210 1112222345568887764322110 12345899998
Q ss_pred CCC--eEEEee
Q 006384 280 RTW--EWSKVK 288 (647)
Q Consensus 280 ~t~--~W~~v~ 288 (647)
.+. .|+.-.
T Consensus 186 ~tG~~~W~~~~ 196 (668)
T 1kv9_A 186 DTGKLAWRFYT 196 (668)
T ss_dssp TTCCEEEEEES
T ss_pred CCCcEEEEecc
Confidence 654 688653
No 210
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=87.44 E-value=20 Score=36.42 Aligned_cols=103 Identities=10% Similarity=0.014 Sum_probs=51.5
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcE
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv 211 (647)
++.+++.++..... ...++.++.....+..............-.++.+ ++++++.|+.+ ..|
T Consensus 230 dg~~l~~~s~d~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D---------~~V 293 (365)
T 4h5i_A 230 DDTVLIAASLKKGK-------GIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASND---------NSI 293 (365)
T ss_dssp TTEEEEEEEESSSC-------CEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETT---------SCE
T ss_pred CCCEEEEEecCCcc-------eeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCC---------CEE
Confidence 67777777644321 1246677776665543322111111111122223 67888888753 468
Q ss_pred EEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCC
Q 006384 212 YVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (647)
Q Consensus 212 ~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~ 257 (647)
.+||+.+.+-...... -....-.+++.. ++.+++-|+.+..
T Consensus 294 ~iwd~~~~~~~~~~~~-----gH~~~V~~v~fSpdg~~laS~S~D~t 335 (365)
T 4h5i_A 294 ALVKLKDLSMSKIFKQ-----AHSFAITEVTISPDSTYVASVSAANT 335 (365)
T ss_dssp EEEETTTTEEEEEETT-----SSSSCEEEEEECTTSCEEEEEETTSE
T ss_pred EEEECCCCcEEEEecC-----cccCCEEEEEECCCCCEEEEEeCCCe
Confidence 8999987653221111 001111122222 6778888877654
No 211
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=86.77 E-value=18 Score=33.84 Aligned_cols=101 Identities=18% Similarity=0.313 Sum_probs=54.2
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCe---EEEecC--CCCCCCcceeEEEE-ECCEEEEEeCCcCCCCCccccc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE---WKVISS--PNSPPPRSAHQAVS-WKNYLYIFGGEFTSPNQERFHH 154 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~---W~~l~s--~~~P~~R~~ha~v~-~~~~iyv~GG~~~~~~~~~~~~ 154 (647)
++++|+|-|. .+|+++..... =+.|.. +.+|. .--++.. .++++|+|-|
T Consensus 15 ~g~~~fFkg~-----------~~w~~~~~~~~~gyP~~I~~~w~glP~--~iDAa~~~~~g~~yfFkg------------ 69 (196)
T 3c7x_A 15 RGEMFVFKER-----------WFWRVRNNQVMDGYPMPIGQFWRGLPA--SINTAYERKDGKFVFFKG------------ 69 (196)
T ss_dssp TTEEEEEETT-----------EEEEEETTEECTTCSEEHHHHSTTCCS--SCCEEEECTTSCEEEEET------------
T ss_pred CCEEEEEECC-----------EEEEEECCccCCCCceEhhHhccCCCC--CccEEEEeCCCcEEEecC------------
Confidence 6899999983 57777543100 011211 12332 1222222 2678999987
Q ss_pred cCcEEEEECCCCc---EEEcccC--CCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCC
Q 006384 155 YKDFWMLDLKTNQ---WEQLNLK--GCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (647)
Q Consensus 155 ~~dv~~yD~~t~~---W~~~~~~--~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (647)
+.+|+|+..+.. =..+... ++|..... ++..+ ++++|+|-| +..|+||..+.
T Consensus 70 -~~yw~~~~~~~~~gyPk~I~~~~~glP~~~ID-AA~~~~~~g~~yfFkG-----------~~yw~yd~~~~ 128 (196)
T 3c7x_A 70 -DKHWVFDEASLEPGYPKHIKELGRGLPTDKID-AALFWMPNGKTYFFRG-----------NKYYRFNEELR 128 (196)
T ss_dssp -TEEEEEETTEECTTCSEEGGGTCBSCCSSCCS-EEEEETTTTEEEEEET-----------TEEEEEETTTT
T ss_pred -CEEEEEeCCcccCCCCeEhhhcCCCCCCCccc-EEEEEccCCEEEEEEC-----------CEEEEEeCCcc
Confidence 467999854211 1123322 23433222 33333 589999977 35789998764
No 212
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=86.76 E-value=7.6 Score=42.43 Aligned_cols=96 Identities=9% Similarity=-0.031 Sum_probs=53.1
Q ss_pred EEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcce
Q 006384 103 LYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSG 182 (647)
Q Consensus 103 l~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~ 182 (647)
+..||+.+.+.+.+... |. ...+ ..-+++.+++++..... ...+|++|+.+..+..+... + ...
T Consensus 134 ~~l~d~~~g~~~~l~~~--~~--~~~~-~spDG~~la~~~~~~~~-------~~~i~~~d~~~g~~~~l~~~--~-~~~- 197 (582)
T 3o4h_A 134 VALYALDGGGLRELARL--PG--FGFV-SDIRGDLIAGLGFFGGG-------RVSLFTSNLSSGGLRVFDSG--E-GSF- 197 (582)
T ss_dssp EEEEEEETTEEEEEEEE--SS--CEEE-EEEETTEEEEEEEEETT-------EEEEEEEETTTCCCEEECCS--S-CEE-
T ss_pred ceEEEccCCcEEEeecC--CC--ceEE-ECCCCCEEEEEEEcCCC-------CeEEEEEcCCCCCceEeecC--C-Ccc-
Confidence 34678888887777542 12 2222 22245555554433221 14599999999998877541 1 111
Q ss_pred eEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceE
Q 006384 183 HRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ 222 (647)
Q Consensus 183 h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~ 222 (647)
....+ +++.++.+...+ ...|+++|+.+.+..
T Consensus 198 -~~~~~SpDG~~l~~~~~~~-------~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 198 -SSASISPGMKVTAGLETAR-------EARLVTVDPRDGSVE 231 (582)
T ss_dssp -EEEEECTTSCEEEEEECSS-------CEEEEEECTTTCCEE
T ss_pred -ccceECCCCCEEEEccCCC-------eeEEEEEcCCCCcEE
Confidence 22333 455444333211 247999999998877
No 213
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=86.63 E-value=9.7 Score=37.85 Aligned_cols=30 Identities=13% Similarity=0.174 Sum_probs=20.0
Q ss_pred CCeEEEecceeccccCccccccccCCcEEEEECC-CCcEEEeEec
Q 006384 306 KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD-NHRWYPLELR 349 (647)
Q Consensus 306 ~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~-t~~W~~l~~~ 349 (647)
++.+++.||.+ ..|.+|++. ...|..+...
T Consensus 273 ~g~~las~~~D--------------~~v~lw~~~~~g~~~~~~~~ 303 (316)
T 3bg1_A 273 TANILAVSGGD--------------NKVTLWKESVDGQWVCISDV 303 (316)
T ss_dssp TTCCEEEEESS--------------SCEEEEEECTTSCEEEEEEC
T ss_pred CCCEEEEEcCC--------------CeEEEEEECCCCcEEEeeec
Confidence 56677777643 347777765 5689888763
No 214
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=86.61 E-value=33 Score=35.79 Aligned_cols=215 Identities=14% Similarity=0.176 Sum_probs=109.8
Q ss_pred CCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcE--EEEEC----CCC-cEEEcccCCCCCCcce
Q 006384 110 KQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDF--WMLDL----KTN-QWEQLNLKGCPSPRSG 182 (647)
Q Consensus 110 ~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv--~~yD~----~t~-~W~~~~~~~~P~~R~~ 182 (647)
.+.|+...-+..|..-.-|+.+.+++.-|.+|=..+.... +.+ ..|.. -.. .=+.++.. .-..-+-
T Consensus 269 ~spW~~t~L~~i~~vTe~HSFa~i~~~~fa~GyHnGDv~P------Re~G~~yfs~~~~sp~~~vrr~i~se-y~~~AsE 341 (670)
T 3ju4_A 269 KSPWRKTDLGLIPSVTEVHSFATIDNNGFAMGYHQGDVAP------REVGLFYFPDAFNSPSNYVRRQIPSE-YEPDASE 341 (670)
T ss_dssp TSCCEEEECCSCTTCSEEEEEEECSSSCEEEEEEECSSSS------CEEEEEEETTTTTCTTCCEEEECCGG-GCTTEEE
T ss_pred cCCceecccccccceeeeeeeeEecCCceEEEeccCCCCc------ceeeEEEecccccCCcceeeeechhh-hcccccc
Confidence 3456655555566677789999998888888844333222 222 22211 111 11223221 1222233
Q ss_pred eEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCC---
Q 006384 183 HRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVS--- 259 (647)
Q Consensus 183 h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~--- 259 (647)
.+.-.+++.||++---... ...-+.+.+-+.....|..+.... -......-++..++.||+||--....-
T Consensus 342 PCvkyYdgvLyLtTRgt~~---~~~GS~L~rs~d~Gq~w~slrfp~----nvHhtnlPFakvgD~l~mFgsERA~nEWE~ 414 (670)
T 3ju4_A 342 PCIKYYDGVLYLITRGTRG---DRLGSSLHRSRDIGQTWESLRFPH----NVHHTTLPFAKVGDDLIMFGSERAENEWEA 414 (670)
T ss_dssp EEEEEETTEEEEEEEESCT---TSCCCEEEEESSTTSSCEEEECTT----CCCSSCCCEEEETTEEEEEEECSSTTCSST
T ss_pred chhhhhCCEEEEEecCcCC---CCCcceeeeecccCCchhheeccc----cccccCCCcceeCCEEEEEecccccccccc
Confidence 4556789999998532211 123456777777778899886541 122233345677999999996422100
Q ss_pred CcccCCCCCceeee-EEEEe-----CCCCeEEEeecC---CCCCCCceeeEEEEE-CCeE-EEecceecccc--------
Q 006384 260 TDKNQSEKGIIHSD-LWSLD-----PRTWEWSKVKKI---GMPPGPRAGFSMCVH-KKRA-LLFGGVVDMEM-------- 320 (647)
Q Consensus 260 ~~~~~~~~~~~~~d-v~~yd-----~~t~~W~~v~~~---g~~P~~R~~~s~~~~-~~~i-yifGG~~~~~~-------- 320 (647)
.....+..+.+-.. +.+.+ ...-.|..+... |..-..-.|.+.+++ ++.| |||||.+....
T Consensus 415 G~pD~RY~a~yPRtF~~r~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vKD~~lyyiFGgEd~~np~s~gdN~~ 494 (670)
T 3ju4_A 415 GAPDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGEDHFNPWTYGDNSA 494 (670)
T ss_dssp TCCCCCSSCBCCEEEEEEEETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEETTEEEEEEEEBCSCCCCTTTTTTT
T ss_pred CCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEeCCEEEEEecCcccCCccccccccc
Confidence 00111122222111 12223 344567777542 334444556665555 6666 48998654321
Q ss_pred CccccccccCCcEEEEEC
Q 006384 321 KGDVIMSLFLNELYGFQL 338 (647)
Q Consensus 321 ~~~~~~~~~~ndl~~yd~ 338 (647)
.........-.+||+|-+
T Consensus 495 k~~~~~~Ghp~dlY~~ri 512 (670)
T 3ju4_A 495 KDPFKSDGHPSDLYCYKM 512 (670)
T ss_dssp CCTTSTTCCCCEEEEEEE
T ss_pred cCccccCCCCcceEEEEE
Confidence 000112233457888865
No 215
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=86.11 E-value=27 Score=34.39 Aligned_cols=53 Identities=9% Similarity=0.039 Sum_probs=29.8
Q ss_pred CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEecceec
Q 006384 245 QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVD 317 (647)
Q Consensus 245 ~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG~~~ 317 (647)
++.+++.|+.++. +.+||+.+..-...-. .....-.++++. ++.+++.|+..+
T Consensus 284 ~~~~l~s~~~dg~----------------i~iwd~~~~~~~~~~~----~~~~~v~~~~~s~~g~~l~~~s~d~ 337 (368)
T 3mmy_A 284 VHGTLATVGSDGR----------------FSFWDKDARTKLKTSE----QLDQPISACCFNHNGNIFAYASSYD 337 (368)
T ss_dssp TTCCEEEEETTSC----------------EEEEETTTTEEEEECC----CCSSCEEEEEECTTSSCEEEEECCC
T ss_pred CCCEEEEEccCCe----------------EEEEECCCCcEEEEec----CCCCCceEEEECCCCCeEEEEeccc
Confidence 5667788877655 8889988765433211 111112233333 567777776543
No 216
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=85.93 E-value=10 Score=38.43 Aligned_cols=91 Identities=10% Similarity=0.048 Sum_probs=48.2
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCc
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R 180 (647)
.+..||+.+.....+..... ....-.+++.. ++.+++.|+.. ..+.+||+....-..+.. . .
T Consensus 142 ~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d-----------~~i~i~d~~~~~~~~~~~---h--~ 204 (383)
T 3ei3_B 142 ATTLRDFSGSVIQVFAKTDS-WDYWYCCVDVSVSRQMLATGDST-----------GRLLLLGLDGHEIFKEKL---H--K 204 (383)
T ss_dssp EEEEEETTSCEEEEEECCCC-SSCCEEEEEEETTTTEEEEEETT-----------SEEEEEETTSCEEEEEEC---S--S
T ss_pred EEEEEECCCCceEEEeccCC-CCCCeEEEEECCCCCEEEEECCC-----------CCEEEEECCCCEEEEecc---C--C
Confidence 57788888777666643221 11112222222 45566666642 468889985444333322 1 1
Q ss_pred ceeEEEEE--CCE-EEEEecccCCCCceeeeCcEEEEEcCC
Q 006384 181 SGHRMVLY--KHK-IIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (647)
Q Consensus 181 ~~h~~~~~--~~~-lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (647)
..-.++.+ ++. +++.|+.+ ..+.+||+.+
T Consensus 205 ~~v~~~~~~~~~~~~l~s~~~d---------~~i~iwd~~~ 236 (383)
T 3ei3_B 205 AKVTHAEFNPRCDWLMATSSVD---------ATVKLWDLRN 236 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEETT---------SEEEEEEGGG
T ss_pred CcEEEEEECCCCCCEEEEEeCC---------CEEEEEeCCC
Confidence 11122233 344 77777653 4688888876
No 217
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=85.65 E-value=43 Score=36.19 Aligned_cols=138 Identities=9% Similarity=0.023 Sum_probs=71.6
Q ss_pred CcEEEEEC--CCCcEEEcccCCCCCCcceeEEEEEC-CEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCC
Q 006384 156 KDFWMLDL--KTNQWEQLNLKGCPSPRSGHRMVLYK-HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232 (647)
Q Consensus 156 ~dv~~yD~--~t~~W~~~~~~~~P~~R~~h~~~~~~-~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~ 232 (647)
..+|.+++ ....- .+.. .+..+ ..+...+ +.+++..+.. +.+.+||+.+.+-..+...
T Consensus 90 ~~l~~~~~~~~g~~~-~l~~--~~~~~--~~~~s~dg~~~~~~s~~~---------~~~~l~d~~~g~~~~l~~~----- 150 (582)
T 3o4h_A 90 HALFKVNTSRPGEEQ-RLEA--VKPMR--ILSGVDTGEAVVFTGATE---------DRVALYALDGGGLRELARL----- 150 (582)
T ss_dssp EEEEEEETTSTTCCE-ECTT--SCSBE--EEEEEECSSCEEEEEECS---------SCEEEEEEETTEEEEEEEE-----
T ss_pred eEEEEEeccCCCccc-cccC--CCCce--eeeeCCCCCeEEEEecCC---------CCceEEEccCCcEEEeecC-----
Confidence 46888887 44332 3332 12122 2233343 4555555432 2334778888877777654
Q ss_pred CCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEE
Q 006384 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALL 311 (647)
Q Consensus 233 P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyi 311 (647)
+. ....... +++.+++++.... ....+|++|+.+..+..+... .....+.+.. +++.++
T Consensus 151 ~~--~~~~~sp-DG~~la~~~~~~~------------~~~~i~~~d~~~g~~~~l~~~-----~~~~~~~~~SpDG~~l~ 210 (582)
T 3o4h_A 151 PG--FGFVSDI-RGDLIAGLGFFGG------------GRVSLFTSNLSSGGLRVFDSG-----EGSFSSASISPGMKVTA 210 (582)
T ss_dssp SS--CEEEEEE-ETTEEEEEEEEET------------TEEEEEEEETTTCCCEEECCS-----SCEEEEEEECTTSCEEE
T ss_pred CC--ceEEECC-CCCEEEEEEEcCC------------CCeEEEEEcCCCCCceEeecC-----CCccccceECCCCCEEE
Confidence 22 2222222 5555555554322 123599999988888776431 1112233333 555554
Q ss_pred ecceeccccCccccccccCCcEEEEECCCCcEE
Q 006384 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (647)
Q Consensus 312 fGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (647)
.+.... ...|+++|+.+....
T Consensus 211 ~~~~~~------------~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 211 GLETAR------------EARLVTVDPRDGSVE 231 (582)
T ss_dssp EEECSS------------CEEEEEECTTTCCEE
T ss_pred EccCCC------------eeEEEEEcCCCCcEE
Confidence 322111 246999999988776
No 218
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=85.64 E-value=12 Score=38.76 Aligned_cols=152 Identities=14% Similarity=0.225 Sum_probs=78.4
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeE--EEecC--CCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW--KVISS--PNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHH 154 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W--~~l~s--~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~ 154 (647)
++++|+|=|. .+|+++.....- ..+.. +.+| ..--++... ++.+|+|-|
T Consensus 190 ~g~~~fFkg~-----------~~Wr~~~~~~~~~p~~I~~~wpgLP--~~iDAa~~~~~~g~~~fFkg------------ 244 (365)
T 3ba0_A 190 GNKIFFFKDR-----------FFWLKVSERPKTSVNLISSLWPTLP--SGIEAAYEIEARNQVFLFKD------------ 244 (365)
T ss_dssp TTEEEEEETT-----------EEEECCSSCCCCCEEEHHHHCSSCC--SSCCEEEEEGGGTEEEEEET------------
T ss_pred CCeEEEEeCC-----------EEEEEcCCCccCCccchhhhccCCC--CCccEEEEecCCCEEEEEeC------------
Confidence 6888888873 456665443211 11111 1123 222233344 689999987
Q ss_pred cCcEEEEECCCCc--E-EEcccCCCCCCc-ceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCC
Q 006384 155 YKDFWMLDLKTNQ--W-EQLNLKGCPSPR-SGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (647)
Q Consensus 155 ~~dv~~yD~~t~~--W-~~~~~~~~P~~R-~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (647)
+.+|+|+..... + ..+...++|..- .--++..+ ++++|+|-| +..|+||..+.+-..--+..
T Consensus 245 -~~yWr~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~~~~yfFkG-----------~~yw~yd~~~~~v~~gyPk~ 312 (365)
T 3ba0_A 245 -DKYWLISNLRPEPNYPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVD-----------NQYWRYDERRQMMDPGYPKL 312 (365)
T ss_dssp -TEEEECSTTSCTTTCSEETTTTTCCTTCCCCCEEEEETTTTEEEEEET-----------TEEEEEETTTTEECSSCCCC
T ss_pred -CEEEEEcCCcccCCCCceeeeccCCCCCCCcCEEEEeCCCCEEEEEEC-----------CEEEEEeCCcceecCCCCcc
Confidence 457888654221 1 233333344421 22234444 579999977 45789987654311100000
Q ss_pred C--CCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEe
Q 006384 229 G--SMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (647)
Q Consensus 229 ~--~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v 287 (647)
- .-+..+..--++... ++.+|+|=|. ..|+||..+.+-..+
T Consensus 313 I~~~f~g~p~~iDaA~~~~~g~~YfFkg~------------------~ywr~d~~~~~v~~~ 356 (365)
T 3ba0_A 313 ITKNFQGIGPKIDAVFYSKNKYYYFFQGS------------------NQFEYDFLLQRITKT 356 (365)
T ss_dssp HHHHSTTCCSSCSEEEEETTTEEEEEETT------------------EEEEEETTTTEEEEE
T ss_pred hhhcCCCCCCccceeeEecCCcEEEEeCC------------------EEEEEECCccEEecc
Confidence 0 000111112233334 7889998773 378999888776553
No 219
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=85.64 E-value=29 Score=34.14 Aligned_cols=105 Identities=14% Similarity=0.123 Sum_probs=55.9
Q ss_pred CEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEE
Q 006384 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFW 159 (647)
Q Consensus 82 ~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~ 159 (647)
+.+++.|+. + ..+.+||+.+.......... .....-..+.+ ++.+++.|+.. ..+.
T Consensus 54 g~~l~~~~~--d-------g~i~iw~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~d-----------g~v~ 111 (368)
T 3mmy_A 54 GNFLIAGSW--A-------NDVRCWEVQDSGQTIPKAQQ--MHTGPVLDVCWSDDGSKVFTASCD-----------KTAK 111 (368)
T ss_dssp SEEEEEEET--T-------SEEEEEEECTTSCEEEEEEE--ECSSCEEEEEECTTSSEEEEEETT-----------SEEE
T ss_pred ceEEEEECC--C-------CcEEEEEcCCCCceeEEEec--cccCCEEEEEECcCCCEEEEEcCC-----------CcEE
Confidence 478888873 2 35788888763222111000 01111222333 45566666532 4688
Q ss_pred EEECCCCcEEEcccCCCCCCcceeEEEE---ECCEEEEEecccCCCCceeeeCcEEEEEcCCCce
Q 006384 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVL---YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (647)
Q Consensus 160 ~yD~~t~~W~~~~~~~~P~~R~~h~~~~---~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W 221 (647)
+||+.+.....+.. .. ..-.+++. -++.+++.|+.+ ..+.+||+.+.+-
T Consensus 112 iwd~~~~~~~~~~~--~~--~~v~~~~~~~~~~~~~l~~~~~d---------g~i~vwd~~~~~~ 163 (368)
T 3mmy_A 112 MWDLSSNQAIQIAQ--HD--APVKTIHWIKAPNYSCVMTGSWD---------KTLKFWDTRSSNP 163 (368)
T ss_dssp EEETTTTEEEEEEE--CS--SCEEEEEEEECSSCEEEEEEETT---------SEEEEECSSCSSC
T ss_pred EEEcCCCCceeecc--cc--CceEEEEEEeCCCCCEEEEccCC---------CcEEEEECCCCcE
Confidence 99998887655433 11 11122222 256777777753 4588899877653
No 220
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=85.43 E-value=9.3 Score=38.68 Aligned_cols=113 Identities=11% Similarity=0.147 Sum_probs=59.6
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCC
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~ 178 (647)
..+|.+++....++.+... .+........+ ++..+++....... ....++++|+.++....+.. .+.
T Consensus 216 ~~l~~~d~~~~~~~~l~~~---~~~~~~~~~~~spdg~~l~~~~~~~~~------~~~~l~~~d~~~g~~~~l~~--~~~ 284 (396)
T 3c5m_A 216 ARMWLVNEDGSNVRKIKEH---AEGESCTHEFWIPDGSAMAYVSYFKGQ------TDRVIYKANPETLENEEVMV--MPP 284 (396)
T ss_dssp CCCEEEETTSCCCEESSCC---CTTEEEEEEEECTTSSCEEEEEEETTT------CCEEEEEECTTTCCEEEEEE--CCS
T ss_pred ceEEEEECCCCceeEeecc---CCCccccceEECCCCCEEEEEecCCCC------ccceEEEEECCCCCeEEeee--CCC
Confidence 5799999988887776541 11212222233 34433333221111 11349999999888777654 221
Q ss_pred CcceeEEEEE-CCEEEEEecccCC--C-----CceeeeCcEEEEEcCCCceEEeccC
Q 006384 179 PRSGHRMVLY-KHKIIVFGGFYDT--L-----REVRYYNDLYVFDLDQFKWQEIKPR 227 (647)
Q Consensus 179 ~R~~h~~~~~-~~~lyv~GG~~~~--~-----~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (647)
.. ....- +++++++++.... . ........++++|+.+.+...+...
T Consensus 285 --~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 338 (396)
T 3c5m_A 285 --CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKH 338 (396)
T ss_dssp --EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEEC
T ss_pred --CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCC
Confidence 12 22222 5666666542100 0 0000135799999998887766544
No 221
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=84.99 E-value=54 Score=36.69 Aligned_cols=149 Identities=12% Similarity=0.033 Sum_probs=82.9
Q ss_pred CcEEEEECCCC--cEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCC---ceEEeccCCCC
Q 006384 156 KDFWMLDLKTN--QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF---KWQEIKPRFGS 230 (647)
Q Consensus 156 ~dv~~yD~~t~--~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~---~W~~v~~~~~~ 230 (647)
+.+|++|+.+. .|..+... ...........+++||+...... ....|+.+|+.+. .|+.+.+..
T Consensus 259 ~~i~~~d~~~~~~~~~~l~~~---~~~~~~~~~~~g~~l~~~t~~~~------~~~~l~~~d~~~~~~~~~~~l~~~~-- 327 (693)
T 3iuj_A 259 NRLYVKDLSQENAPLLTVQGD---LDADVSLVDNKGSTLYLLTNRDA------PNRRLVTVDAANPGPAHWRDLIPER-- 327 (693)
T ss_dssp CEEEEEETTSTTCCCEEEECS---SSSCEEEEEEETTEEEEEECTTC------TTCEEEEEETTSCCGGGCEEEECCC--
T ss_pred cEEEEEECCCCCCceEEEeCC---CCceEEEEeccCCEEEEEECCCC------CCCEEEEEeCCCCCccccEEEecCC--
Confidence 58999998776 67777541 11111123345789998876432 1357899998763 488776541
Q ss_pred CCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeE
Q 006384 231 MWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRA 309 (647)
Q Consensus 231 ~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~i 309 (647)
.... .+...++.|++..-.+. ...++++++.......+.. |..........- ++..
T Consensus 328 ---~~~~--~~s~~g~~lv~~~~~~g--------------~~~l~~~d~~g~~~~~l~~----p~~~~~~~~~~~~d~~~ 384 (693)
T 3iuj_A 328 ---QQVL--TVHSGSGYLFAEYMVDA--------------TARVEQFDYEGKRVREVAL----PGLGSVSGFNGKHDDPA 384 (693)
T ss_dssp ---SSCE--EEEEETTEEEEEEEETT--------------EEEEEEECTTSCEEEEECC----SSSSEEEECCCCTTCSC
T ss_pred ---CCEE--EEEEECCEEEEEEEECC--------------eeEEEEEECCCCeeEEeec----CCCceEEeeecCCCCCE
Confidence 1112 45555777766543221 2458899988766555532 221111111111 2333
Q ss_pred EEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 310 LLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 310 yifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
++|.... ...-..+|.||+.+..+..+..
T Consensus 385 l~~~~ss----------~~tP~~l~~~d~~~g~~~~l~~ 413 (693)
T 3iuj_A 385 LYFGFEN----------YAQPPTLYRFEPKSGAISLYRA 413 (693)
T ss_dssp EEEEEEC----------SSSCCEEEEECTTTCCEEEEEC
T ss_pred EEEEecC----------CCCCCEEEEEECCCCeEEEEEe
Confidence 3332211 1123679999999988877665
No 222
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=84.99 E-value=32 Score=34.06 Aligned_cols=112 Identities=10% Similarity=-0.064 Sum_probs=58.0
Q ss_pred CcEEEEECCCCeEEEecCCCCC----------------CCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEE
Q 006384 101 GDLYRYDVEKQEWKVISSPNSP----------------PPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLD 162 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P----------------~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD 162 (647)
+.+++|++.+..++.+...... ....-+.++.. ++.|||.... ..+++||
T Consensus 40 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~------------~~i~~~d 107 (322)
T 2fp8_A 40 GRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY------------YHLSVVG 107 (322)
T ss_dssp SEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT------------TEEEEEC
T ss_pred CeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC------------CCEEEEe
Confidence 4688999988777655321100 00123455555 5789987431 3478899
Q ss_pred CCCCcEEEcccCCCCC-CcceeEEEEE--CCEEEEEecccCCC-Cc-------eeeeCcEEEEEcCCCceEEe
Q 006384 163 LKTNQWEQLNLKGCPS-PRSGHRMVLY--KHKIIVFGGFYDTL-RE-------VRYYNDLYVFDLDQFKWQEI 224 (647)
Q Consensus 163 ~~t~~W~~~~~~~~P~-~R~~h~~~~~--~~~lyv~GG~~~~~-~~-------~~~~~dv~~yD~~t~~W~~v 224 (647)
+.+...+.+....... ...-+.+++- ++.||+.-...... +. ......+++||+.+.+...+
T Consensus 108 ~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~ 180 (322)
T 2fp8_A 108 SEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLL 180 (322)
T ss_dssp TTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEE
T ss_pred CCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEe
Confidence 8877655553211000 1122233333 56888864211000 00 00125689999988766544
No 223
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=84.66 E-value=31 Score=33.71 Aligned_cols=144 Identities=10% Similarity=0.026 Sum_probs=69.7
Q ss_pred eEEEEeccCCCE-EEEEcCeecCCCcceeeCcEEEEEC-CCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCC
Q 006384 72 CSLNINPLKETE-LILYGGEFYNGNKTYVYGDLYRYDV-EKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 72 ~s~~~~~~~~~~-lyv~GG~~~~g~~~~~~ndl~~yd~-~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~ 149 (647)
.+++..| ++. +++.|+. + ..+.+||+ .+.....+... +....-.+++...+.+++.|+..
T Consensus 60 ~~~~~~~--~~~~~l~~~~~--d-------g~i~~wd~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~l~s~~~d----- 121 (342)
T 1yfq_A 60 LCCNFID--NTDLQIYVGTV--Q-------GEILKVDLIGSPSFQALTNN--EANLGICRICKYGDDKLIAASWD----- 121 (342)
T ss_dssp EEEEEEE--SSSEEEEEEET--T-------SCEEEECSSSSSSEEECBSC--CCCSCEEEEEEETTTEEEEEETT-----
T ss_pred EEEEECC--CCCcEEEEEcC--C-------CeEEEEEeccCCceEecccc--CCCCceEEEEeCCCCEEEEEcCC-----
Confidence 3445555 456 6667762 2 36889999 88777655431 01112223333335555666532
Q ss_pred ccccccCcEEEEECCCCc-------EEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCC-Cc-
Q 006384 150 ERFHHYKDFWMLDLKTNQ-------WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ-FK- 220 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~-------W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t-~~- 220 (647)
..+.+||+.+.. ...+.. ......-.+++...+. ++.|+. -..+.+||+.+ ..
T Consensus 122 ------~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~-l~~~~~---------d~~i~i~d~~~~~~~ 183 (342)
T 1yfq_A 122 ------GLIEVIDPRNYGDGVIAVKNLNSNN--TKVKNKIFTMDTNSSR-LIVGMN---------NSQVQWFRLPLCEDD 183 (342)
T ss_dssp ------SEEEEECHHHHTTBCEEEEESCSSS--SSSCCCEEEEEECSSE-EEEEES---------TTEEEEEESSCCTTC
T ss_pred ------CeEEEEcccccccccccccCCeeeE--EeeCCceEEEEecCCc-EEEEeC---------CCeEEEEECCccccc
Confidence 357777765300 111222 1212222234444555 555553 24688899887 33
Q ss_pred -eEEeccCCCCCCCCCceeeeEEEe--CCEEEEEecccCC
Q 006384 221 -WQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKE 257 (647)
Q Consensus 221 -W~~v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~ 257 (647)
....... ....-.+++.. ++.+++.|+.++.
T Consensus 184 ~~~~~~~~------~~~~i~~i~~~~~~~~~l~~~~~dg~ 217 (342)
T 1yfq_A 184 NGTIEESG------LKYQIRDVALLPKEQEGYACSSIDGR 217 (342)
T ss_dssp CCEEEECS------CSSCEEEEEECSGGGCEEEEEETTSE
T ss_pred cceeeecC------CCCceeEEEECCCCCCEEEEEecCCc
Confidence 3222221 11122233333 4667777776543
No 224
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=84.21 E-value=28 Score=35.41 Aligned_cols=141 Identities=13% Similarity=0.045 Sum_probs=70.9
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcce-eEEEEE---CCEEEEEecccCCCCceeeeCcEEEEEcCCC--ceEEeccCCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSG-HRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--KWQEIKPRFG 229 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~-h~~~~~---~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~--~W~~v~~~~~ 229 (647)
..+.+||+.+..-...-....+..... -..+.+ ++.+++.|+.+ ..+.+||+... .-..+...
T Consensus 180 ~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D---------~~v~~wd~~~~~~~~~~~~~h-- 248 (380)
T 3iz6_a 180 QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD---------TTVRLWDLRITSRAVRTYHGH-- 248 (380)
T ss_dssp SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETT---------SCEEEEETTTTCCCCEEECCC--
T ss_pred CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECC---------CeEEEEECCCCCcceEEECCc--
Confidence 357889998876544322111221111 112222 56788888864 35778887532 11111111
Q ss_pred CCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCC--CCCc-eeeEEEEE
Q 006384 230 SMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMP--PGPR-AGFSMCVH 305 (647)
Q Consensus 230 ~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~--P~~R-~~~s~~~~ 305 (647)
...-.+++.. ++.+++.|+.++. +.+||+.+..-...-..... .... .-.++++.
T Consensus 249 -----~~~v~~v~~~p~~~~l~s~s~D~~----------------i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 307 (380)
T 3iz6_a 249 -----EGDINSVKFFPDGQRFGTGSDDGT----------------CRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFS 307 (380)
T ss_dssp -----SSCCCEEEECTTSSEEEEECSSSC----------------EEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEEC
T ss_pred -----CCCeEEEEEecCCCeEEEEcCCCe----------------EEEEECCCCcEEEEecccccccccccCceEEEEEC
Confidence 0111123333 5677888887765 77888877654333221000 0001 11233333
Q ss_pred -CCeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 306 -~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
++.+++.|+.+ ..|++||+.+..
T Consensus 308 ~~g~~l~~g~~d--------------g~i~vwd~~~~~ 331 (380)
T 3iz6_a 308 ISGRLLFAGYSN--------------GDCYVWDTLLAE 331 (380)
T ss_dssp SSSSEEEEECTT--------------SCEEEEETTTCC
T ss_pred CCCCEEEEEECC--------------CCEEEEECCCCc
Confidence 56777776542 458999987654
No 225
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=83.93 E-value=22 Score=37.97 Aligned_cols=149 Identities=15% Similarity=0.236 Sum_probs=78.3
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEE--ecCC--CCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKV--ISSP--NSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHH 154 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~--l~s~--~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~ 154 (647)
++++|+|=|. .+|+++.....+.. |... .+| ..--++... ++.+|+|=|
T Consensus 272 ~ge~y~Fkg~-----------~~wr~~~~~~~~~p~~I~~~Wp~LP--~~iDAa~~~~~~g~~~fFKg------------ 326 (450)
T 1su3_A 272 RGEVMFFKDR-----------FYMRTNPFYPEVELNFISVFWPQLP--NGLEAAYEFADRDEVRFFKG------------ 326 (450)
T ss_dssp TTEEEEEETT-----------EEEECCTTSSSCEEEEGGGTCTTSC--SSCCEEEEEGGGTEEEEEET------------
T ss_pred CCeEEEEeCC-----------EEEEEcCCCCcccceehhHhccCCC--CCeeEEEEEcCCCeEEEEeC------------
Confidence 6899999884 45666655443331 2211 122 222233333 589999987
Q ss_pred cCcEEEEECCCC---cEEEcc-cCCCCCC-cceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCce-----E
Q 006384 155 YKDFWMLDLKTN---QWEQLN-LKGCPSP-RSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW-----Q 222 (647)
Q Consensus 155 ~~dv~~yD~~t~---~W~~~~-~~~~P~~-R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W-----~ 222 (647)
+.+|+|+..+. -=..+. ..+.|.. ..--++..+ ++++|+|-| +..|+||..+.+- .
T Consensus 327 -~~~W~~~~~~~~~gyP~~i~~~~g~P~~~~~IDAA~~~~~~~k~yfFkG-----------~~yw~yd~~~~~~~~gYPk 394 (450)
T 1su3_A 327 -NKYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVA-----------NKYWRYDEYKRSMDPGYPK 394 (450)
T ss_dssp -TEEEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEET-----------TEEEEEETTTTEECSSCSE
T ss_pred -CEEEEecCCcccCCCceeeehhhcCCCCCCccceEEEEcCCCeEEEEeC-----------CEEEEEeCCCccccCCCCc
Confidence 46788874321 011222 1233321 111233333 589999987 4688998764321 1
Q ss_pred EeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEe
Q 006384 223 EIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (647)
Q Consensus 223 ~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v 287 (647)
.|.....+ +|. .. -+++..++++|+|-|. ..|+||..+.+-...
T Consensus 395 ~I~~~fpg-ip~-~i-DAA~~~~g~~YFFkg~------------------~ywr~d~~~~~v~~~ 438 (450)
T 1su3_A 395 MIAHDFPG-IGH-KV-DAVFMKDGFFYFFHGT------------------RQYKFDPKTKRILTL 438 (450)
T ss_dssp EHHHHSTT-SCS-CC-SEEEEETTEEEEEETT------------------EEEEEETTTTEEEEE
T ss_pred chhhcCCC-CCC-Cc-cEEEEcCCeEEEEeCC------------------EEEEEECCcceEecc
Confidence 12111011 121 12 2333458999999774 378999877665543
No 226
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=83.90 E-value=12 Score=39.01 Aligned_cols=63 Identities=11% Similarity=0.153 Sum_probs=33.0
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCc-EEEcccCCCCCCcceeEEEEE---CCEEEEEecccCCCCceeeeC
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ-WEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYN 209 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~-W~~~~~~~~P~~R~~h~~~~~---~~~lyv~GG~~~~~~~~~~~~ 209 (647)
++.+++.|+.. ..|.+||+.+.. ...+.. .......-.++.+ +..+++.|+.. .
T Consensus 243 ~~~~l~s~~~d-----------g~i~i~d~~~~~~~~~~~~--~~~~~~~v~~i~~~p~~~~~l~tg~~d---------g 300 (430)
T 2xyi_A 243 HESLFGSVADD-----------QKLMIWDTRNNNTSKPSHT--VDAHTAEVNCLSFNPYSEFILATGSAD---------K 300 (430)
T ss_dssp CTTEEEEEETT-----------SEEEEEETTCSCSSSCSEE--EECCSSCEEEEEECSSCTTEEEEEETT---------S
T ss_pred CCCEEEEEeCC-----------CeEEEEECCCCCCCcceeE--eecCCCCeEEEEeCCCCCCEEEEEeCC---------C
Confidence 45677776642 468899988652 111100 0011111223333 33478888753 4
Q ss_pred cEEEEEcCC
Q 006384 210 DLYVFDLDQ 218 (647)
Q Consensus 210 dv~~yD~~t 218 (647)
.|.+||+.+
T Consensus 301 ~v~vwd~~~ 309 (430)
T 2xyi_A 301 TVALWDLRN 309 (430)
T ss_dssp EEEEEETTC
T ss_pred eEEEEeCCC
Confidence 588898876
No 227
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=83.90 E-value=26 Score=36.26 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=13.1
Q ss_pred cceEEEEeccCCCEEEEEcC
Q 006384 70 SNCSLNINPLKETELILYGG 89 (647)
Q Consensus 70 ~~~s~~~~~~~~~~lyv~GG 89 (647)
..|++++.. +++||.+|-
T Consensus 116 ~~h~~al~~--~G~v~~wG~ 133 (389)
T 3kci_A 116 GKHCLALSS--EGEVYSWGE 133 (389)
T ss_dssp CSEEEEEET--TSCEEEEEC
T ss_pred CCeEEEEcC--CCCEEEEeC
Confidence 346666664 689999995
No 228
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=83.79 E-value=44 Score=34.74 Aligned_cols=16 Identities=13% Similarity=0.117 Sum_probs=12.0
Q ss_pred eeEEEEE-CCEEEEEeC
Q 006384 127 AHQAVSW-KNYLYIFGG 142 (647)
Q Consensus 127 ~ha~v~~-~~~iyv~GG 142 (647)
.|+++.. ++.||.+|-
T Consensus 131 ~h~~alt~~G~v~~wG~ 147 (406)
T 4d9s_A 131 SHCLAVTMEGEVQSWGR 147 (406)
T ss_dssp SEEEEEETTSCEEEEEC
T ss_pred hheEEEcCCCcEEEeCC
Confidence 5666665 689999994
No 229
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=83.73 E-value=27 Score=34.43 Aligned_cols=97 Identities=8% Similarity=-0.036 Sum_probs=50.2
Q ss_pred CEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEE
Q 006384 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLY 212 (647)
Q Consensus 135 ~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~ 212 (647)
+.+++.|+.. ..+.+||+.+..-...-. .... .-.+++.. ++.+++.|+.+ ..+.
T Consensus 85 ~~~l~~~~~d-----------g~i~v~d~~~~~~~~~~~--~~~~-~i~~~~~~~~~~~~l~s~~~d---------g~i~ 141 (366)
T 3k26_A 85 HPLLAVAGSR-----------GIIRIINPITMQCIKHYV--GHGN-AINELKFHPRDPNLLLSVSKD---------HALR 141 (366)
T ss_dssp CEEEEEEETT-----------CEEEEECTTTCCEEEEEE--SCCS-CEEEEEECSSCTTEEEEEETT---------SCEE
T ss_pred CCEEEEecCC-----------CEEEEEEchhceEeeeec--CCCC-cEEEEEECCCCCCEEEEEeCC---------CeEE
Confidence 5677777743 458889988765332211 1111 11222222 55677777753 4688
Q ss_pred EEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCC
Q 006384 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (647)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~ 257 (647)
+||+.+.+-...-... ......-.+++.. ++.+++.|+.++.
T Consensus 142 iwd~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~ 184 (366)
T 3k26_A 142 LWNIQTDTLVAIFGGV---EGHRDEVLSADYDLLGEKIMSCGMDHS 184 (366)
T ss_dssp EEETTTTEEEEEECST---TSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEeecCeEEEEeccc---ccccCceeEEEECCCCCEEEEecCCCC
Confidence 9999877644432110 0111122223333 5667777776654
No 230
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=83.13 E-value=35 Score=33.10 Aligned_cols=87 Identities=15% Similarity=0.042 Sum_probs=42.2
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEE-ecCCCCCC--CcceeEEEEE--CCEEEEEeCCcCC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKV-ISSPNSPP--PRSAHQAVSW--KNYLYIFGGEFTS 146 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~-l~s~~~P~--~R~~ha~v~~--~~~iyv~GG~~~~ 146 (647)
+.+++.|. +..||+.+.. .+.+++||+.+.+-.. +.... +. ...-+.++.. +..||+.......
T Consensus 37 ~~~~~s~d-g~~l~v~~~~---------~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 105 (337)
T 1pby_B 37 MVPMVAPG-GRIAYATVNK---------SESLVKIDLVTGETLGRIDLST-PEERVKSLFGAALSPDGKTLAIYESPVRL 105 (337)
T ss_dssp CCEEECTT-SSEEEEEETT---------TTEEEEEETTTCCEEEEEECCB-TTEEEECTTCEEECTTSSEEEEEEEEEEE
T ss_pred cceEEcCC-CCEEEEEeCC---------CCeEEEEECCCCCeEeeEEcCC-cccccccccceEECCCCCEEEEEeccccc
Confidence 34555552 3477777652 2468999998876542 33211 00 0011222332 3467776421000
Q ss_pred CCCcccc-ccCcEEEEECCCCcEEE
Q 006384 147 PNQERFH-HYKDFWMLDLKTNQWEQ 170 (647)
Q Consensus 147 ~~~~~~~-~~~dv~~yD~~t~~W~~ 170 (647)
.... +. .-..+++||+.+.+...
T Consensus 106 ~~~~-~~~~~~~i~v~d~~~~~~~~ 129 (337)
T 1pby_B 106 ELTH-FEVQPTRVALYDAETLSRRK 129 (337)
T ss_dssp CSSC-EEECCCEEEEEETTTTEEEE
T ss_pred cccc-ccccCceEEEEECCCCcEEE
Confidence 0000 00 12679999998876543
No 231
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=83.03 E-value=13 Score=42.02 Aligned_cols=126 Identities=11% Similarity=0.117 Sum_probs=69.4
Q ss_pred EEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc--eEEeccCCCCCCCC---CceeeeEEEeCCEEEEEecccCCCC
Q 006384 185 MVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPS---PRSGFQFFVYQDEVFLYGGYSKEVS 259 (647)
Q Consensus 185 ~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~---~R~~~s~~~~~~~Iyv~GG~~~~~~ 259 (647)
-++.++.||+... .+.|+.||..+.+ |+.-........+. .....+.++.++.||+.. .+.
T Consensus 66 P~v~~g~vyv~~~----------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~-~dg--- 131 (689)
T 1yiq_A 66 PIVVDGVMYTTGP----------FSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGV-LDG--- 131 (689)
T ss_dssp CEEETTEEEEECG----------GGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEEC-TTS---
T ss_pred CEEECCEEEEEcC----------CCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEc-cCC---
Confidence 3567999999764 2468999988754 88643321000000 001123456688887754 222
Q ss_pred CcccCCCCCceeeeEEEEeCCCC--eEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEE
Q 006384 260 TDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQ 337 (647)
Q Consensus 260 ~~~~~~~~~~~~~dv~~yd~~t~--~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd 337 (647)
.++.||..+. .|+...............+.++.++.+|+-.+... ...-..|+.||
T Consensus 132 -------------~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~---------~~~~g~v~a~D 189 (689)
T 1yiq_A 132 -------------RLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAE---------FGVRGYVTAYD 189 (689)
T ss_dssp -------------EEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTT---------TCCBCEEEEEE
T ss_pred -------------EEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCc---------cCCCCEEEEEE
Confidence 3889998654 68875421100111222344567888877433211 01235699999
Q ss_pred CCCCc--EEEe
Q 006384 338 LDNHR--WYPL 346 (647)
Q Consensus 338 ~~t~~--W~~l 346 (647)
+.+.+ |+.-
T Consensus 190 ~~tG~~~W~~~ 200 (689)
T 1yiq_A 190 AETGKEAWRFY 200 (689)
T ss_dssp TTTCCEEEEEE
T ss_pred CCCCcEEEEec
Confidence 98875 8754
No 232
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=82.90 E-value=21 Score=37.07 Aligned_cols=154 Identities=10% Similarity=0.144 Sum_probs=80.0
Q ss_pred EEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcE--EEccc--CCCCCCcceeEEEEE--CCEEEEEecccCCC
Q 006384 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQW--EQLNL--KGCPSPRSGHRMVLY--KHKIIVFGGFYDTL 202 (647)
Q Consensus 129 a~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W--~~~~~--~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~ 202 (647)
+++.+++.+|+|=| +-+|+++.....- ..+.. .++|. ... ++... ++++|+|-|
T Consensus 185 Av~~~~g~~~fFkg-------------~~~Wr~~~~~~~~~p~~I~~~wpgLP~-~iD-Aa~~~~~~g~~~fFkg----- 244 (365)
T 3ba0_A 185 AVTTVGNKIFFFKD-------------RFFWLKVSERPKTSVNLISSLWPTLPS-GIE-AAYEIEARNQVFLFKD----- 244 (365)
T ss_dssp CEEEETTEEEEEET-------------TEEEECCSSCCCCCEEEHHHHCSSCCS-SCC-EEEEEGGGTEEEEEET-----
T ss_pred eEEEcCCeEEEEeC-------------CEEEEEcCCCccCCccchhhhccCCCC-Ccc-EEEEecCCCEEEEEeC-----
Confidence 45556899999977 4577776543221 12211 12342 222 33333 789999977
Q ss_pred CceeeeCcEEEEEcCCCc--e-EEeccCCCCCCCCC-ceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEE
Q 006384 203 REVRYYNDLYVFDLDQFK--W-QEIKPRFGSMWPSP-RSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWS 276 (647)
Q Consensus 203 ~~~~~~~dv~~yD~~t~~--W-~~v~~~~~~~~P~~-R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~ 276 (647)
+.+|+|+..... + ..|... .+|.. ..--++... ++++|+|-|. ..|+
T Consensus 245 ------~~yWr~~~~~~~~gyPk~I~~~---GlP~~~~~IDAA~~~~~~~~~yfFkG~------------------~yw~ 297 (365)
T 3ba0_A 245 ------DKYWLISNLRPEPNYPKSIHSF---GFPNFVKKIDAAVFNPRFYRTYFFVDN------------------QYWR 297 (365)
T ss_dssp ------TEEEECSTTSCTTTCSEETTTT---TCCTTCCCCCEEEEETTTTEEEEEETT------------------EEEE
T ss_pred ------CEEEEEcCCcccCCCCceeeec---cCCCCCCCcCEEEEeCCCCEEEEEECC------------------EEEE
Confidence 346777643211 1 122211 12321 111222233 5899999763 3789
Q ss_pred EeCCCCeEEEeec----CCCCCCCceeeEEEEE-CCeEEEecceeccccCccccccccCCcEEEEECCCCcEEE
Q 006384 277 LDPRTWEWSKVKK----IGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (647)
Q Consensus 277 yd~~t~~W~~v~~----~g~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (647)
||..+.+-..--+ .+-+..+..--++... ++++|+|=| +..|+||..+.+-..
T Consensus 298 yd~~~~~v~~gyPk~I~~~f~g~p~~iDaA~~~~~g~~YfFkg----------------~~ywr~d~~~~~v~~ 355 (365)
T 3ba0_A 298 YDERRQMMDPGYPKLITKNFQGIGPKIDAVFYSKNKYYYFFQG----------------SNQFEYDFLLQRITK 355 (365)
T ss_dssp EETTTTEECSSCCCCHHHHSTTCCSSCSEEEEETTTEEEEEET----------------TEEEEEETTTTEEEE
T ss_pred EeCCcceecCCCCcchhhcCCCCCCccceeeEecCCcEEEEeC----------------CEEEEEECCccEEec
Confidence 9977654221000 0001112112234444 789999977 348999998876554
No 233
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=82.87 E-value=26 Score=38.96 Aligned_cols=124 Identities=12% Similarity=0.146 Sum_probs=67.1
Q ss_pred EEEECCEEEEEeCCcCCCCCccccccCcEEEEEC-CCC--cEEEcccCCC---CCCc---ceeEEEE--ECCE----EEE
Q 006384 130 AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDL-KTN--QWEQLNLKGC---PSPR---SGHRMVL--YKHK----IIV 194 (647)
Q Consensus 130 ~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~-~t~--~W~~~~~~~~---P~~R---~~h~~~~--~~~~----lyv 194 (647)
-++.++.||+.+.. ...|+.||. .+. .|+.-..... +..+ ...+.++ .+++ ||+
T Consensus 58 P~v~~g~vyv~~~~-----------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v 126 (599)
T 1w6s_A 58 PLVVDGKMYIHTSF-----------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILK 126 (599)
T ss_dssp CEEETTEEEEECST-----------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEE
T ss_pred cEEECCEEEEEeCC-----------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEE
Confidence 35669999998652 146899999 776 4876543110 0011 1123344 5666 776
Q ss_pred EecccCCCCceeeeCcEEEEEcCCCc--eEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceee
Q 006384 195 FGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHS 272 (647)
Q Consensus 195 ~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~ 272 (647)
... -..|+.+|..+.+ |+.-..... +......+.++.++.|||-.+.... ....
T Consensus 127 ~t~----------dg~l~AlDa~TG~~~W~~~~~~~~---~~~~~~ssP~v~~g~V~vg~~g~e~-----------g~~g 182 (599)
T 1w6s_A 127 TQL----------DGNVAALNAETGETVWKVENSDIK---VGSTLTIAPYVVKDKVIIGSSGAEL-----------GVRG 182 (599)
T ss_dssp ECT----------TSEEEEEETTTCCEEEEEECCCGG---GTCBCCSCCEEETTEEEECCBCGGG-----------TCCC
T ss_pred EcC----------CCEEEEEECCCCCEEEeecCCCCC---ccceeecCCEEECCEEEEEeccccc-----------CCCC
Confidence 432 2468999988765 875422100 0001122334568877764321110 1234
Q ss_pred eEEEEeCCCC--eEEEee
Q 006384 273 DLWSLDPRTW--EWSKVK 288 (647)
Q Consensus 273 dv~~yd~~t~--~W~~v~ 288 (647)
.++.||+.+. .|+.-.
T Consensus 183 ~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 183 YLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp EEEEEETTTCCEEEEEES
T ss_pred eEEEEECCCCcEEEEEcC
Confidence 5889998754 587653
No 234
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=82.51 E-value=30 Score=38.43 Aligned_cols=113 Identities=9% Similarity=-0.029 Sum_probs=59.0
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCC
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~ 179 (647)
.++.+|+.+.+-..+..... ........+.+ +++.++++........ ......++++|+.+.....+........
T Consensus 38 ~i~~~d~~~g~~~~~~~~~~-~~~~~v~~~~~SpDg~~l~~~~~~~~~~~--~~~~~~i~~~d~~~~~~~~l~~~~~~~~ 114 (723)
T 1xfd_A 38 TVRLWNVETNTSTVLIEGKK-IESLRAIRYEISPDREYALFSYNVEPIYQ--HSYTGYYVLSKIPHGDPQSLDPPEVSNA 114 (723)
T ss_dssp CEEEBCGGGCCCEEEECTTT-TTTTTCSEEEECTTSSEEEEEESCCCCSS--SCCCSEEEEEESSSCCCEECCCTTCCSC
T ss_pred CEEEEECCCCcEEEEecccc-ccccccceEEECCCCCEEEEEecCcccee--ecceeeEEEEECCCCceEeccCCccccc
Confidence 68888988876554443211 10001222333 4555566543222111 1234789999999887666654211111
Q ss_pred cceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccC
Q 006384 180 RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (647)
Q Consensus 180 R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (647)
+..+.+..-+++.++|+.. +.|+++|+.+....++...
T Consensus 115 ~~~~~~~SPdG~~la~~~~----------~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 115 KLQYAGWGPKGQQLIFIFE----------NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp CCSBCCBCSSTTCEEEEET----------TEEEEESSSSSCCEEEECC
T ss_pred cccccEECCCCCEEEEEEC----------CeEEEEECCCCceEEEecC
Confidence 1121222225555555542 3689999988877776543
No 235
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=82.39 E-value=48 Score=34.07 Aligned_cols=74 Identities=8% Similarity=-0.086 Sum_probs=39.6
Q ss_pred CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCe--EEEecceeccccC
Q 006384 245 QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKR--ALLFGGVVDMEMK 321 (647)
Q Consensus 245 ~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~--iyifGG~~~~~~~ 321 (647)
+++|||....... .......+.++++|+.+.+-...-+ .+...+++++- +++ +|+..+.
T Consensus 278 ~~~lyV~~~~~~~-------~~~~~~~~~V~VID~~t~~vv~~i~-----~g~~p~~i~~s~Dg~~~l~v~~~~------ 339 (373)
T 2mad_H 278 SDGIYLLTSEQSA-------WKLHAAAKEVTSVTGLVGQTSSQIS-----LGHDVDAISVAQDGGPDLYALSAG------ 339 (373)
T ss_pred CCEEEEEeccCCc-------ccccCCCCeEEEEECCCCEEEEEEE-----CCCCcCeEEECCCCCeEEEEEcCC------
Confidence 6788887542111 0001123679999998876532212 22223444444 444 4443321
Q ss_pred ccccccccCCcEEEEECCCCcEE
Q 006384 322 GDVIMSLFLNELYGFQLDNHRWY 344 (647)
Q Consensus 322 ~~~~~~~~~ndl~~yd~~t~~W~ 344 (647)
.++|.+||+.+.+=.
T Consensus 340 --------~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 340 --------TEVLHIYDAGAGDQD 354 (373)
T ss_pred --------CCeEEEEECCCCCEE
Confidence 377999999876543
No 236
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=82.25 E-value=13 Score=39.91 Aligned_cols=153 Identities=10% Similarity=0.145 Sum_probs=79.4
Q ss_pred EEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcc--cC--CCCCCcceeEEEEE--CCEEEEEecccCCC
Q 006384 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLN--LK--GCPSPRSGHRMVLY--KHKIIVFGGFYDTL 202 (647)
Q Consensus 129 a~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~--~~--~~P~~R~~h~~~~~--~~~lyv~GG~~~~~ 202 (647)
+++.+.+.+|+|-| +-+|+++.....+.... .. ++|.. --++... ++++|+|=|.
T Consensus 267 Ai~~~~ge~y~Fkg-------------~~~wr~~~~~~~~~p~~I~~~Wp~LP~~--iDAa~~~~~~g~~~fFKg~---- 327 (450)
T 1su3_A 267 AITTIRGEVMFFKD-------------RFYMRTNPFYPEVELNFISVFWPQLPNG--LEAAYEFADRDEVRFFKGN---- 327 (450)
T ss_dssp EEEEETTEEEEEET-------------TEEEECCTTSSSCEEEEGGGTCTTSCSS--CCEEEEEGGGTEEEEEETT----
T ss_pred eEEecCCeEEEEeC-------------CEEEEEcCCCCcccceehhHhccCCCCC--eeEEEEEcCCCeEEEEeCC----
Confidence 55667899999988 35677776554443221 11 12321 2223332 6899999873
Q ss_pred CceeeeCcEEEEEcCCC--ce-EEec-cCCCCCCCC--CceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEE
Q 006384 203 REVRYYNDLYVFDLDQF--KW-QEIK-PRFGSMWPS--PRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLW 275 (647)
Q Consensus 203 ~~~~~~~dv~~yD~~t~--~W-~~v~-~~~~~~~P~--~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~ 275 (647)
.+|+|+..+. .+ ..|. .. .+|. .....++... ++++|+|-|. ..|
T Consensus 328 -------~~W~~~~~~~~~gyP~~i~~~~---g~P~~~~~IDAA~~~~~~~k~yfFkG~------------------~yw 379 (450)
T 1su3_A 328 -------KYWAVQGQNVLHGYPKDIYSSF---GFPRTVKHIDAALSEENTGKTYFFVAN------------------KYW 379 (450)
T ss_dssp -------EEEEEETTEECTTCSEEHHHHH---CCCTTCCCCCEEEEETTTTEEEEEETT------------------EEE
T ss_pred -------EEEEecCCcccCCCceeeehhh---cCCCCCCccceEEEEcCCCeEEEEeCC------------------EEE
Confidence 4677764321 01 1111 00 0122 1222222222 6899999773 388
Q ss_pred EEeCCCCeEEE-----eecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEE
Q 006384 276 SLDPRTWEWSK-----VKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (647)
Q Consensus 276 ~yd~~t~~W~~-----v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (647)
+||..+.+-.. +.. +.+-.+..--++...++++|+|-| +..|+||..+.+=..
T Consensus 380 ~yd~~~~~~~~gYPk~I~~-~fpgip~~iDAA~~~~g~~YFFkg----------------~~ywr~d~~~~~v~~ 437 (450)
T 1su3_A 380 RYDEYKRSMDPGYPKMIAH-DFPGIGHKVDAVFMKDGFFYFFHG----------------TRQYKFDPKTKRILT 437 (450)
T ss_dssp EEETTTTEECSSCSEEHHH-HSTTSCSCCSEEEEETTEEEEEET----------------TEEEEEETTTTEEEE
T ss_pred EEeCCCccccCCCCcchhh-cCCCCCCCccEEEEcCCeEEEEeC----------------CEEEEEECCcceEec
Confidence 99876543221 110 000111112233446899999987 347999987766443
No 237
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=81.29 E-value=15 Score=35.12 Aligned_cols=101 Identities=19% Similarity=0.450 Sum_probs=55.8
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeE--EEecCC--CCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccC
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW--KVISSP--NSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYK 156 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W--~~l~s~--~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~ 156 (647)
++++|+|=|. .+|+|+.....+ ..|... .+| ..--++...++++|+|-| +
T Consensus 28 ~g~~yfFkg~-----------~~Wr~~~~~~~~~p~~Is~~wpgLP--~~IDAA~~~~~~~yfFkG-------------~ 81 (219)
T 1hxn_A 28 HGATYVFSGS-----------HYWRLDTNRDGWHSWPIAHQWPQGP--STVDAAFSWEDKLYLIQD-------------T 81 (219)
T ss_dssp TSCEEEEETT-----------EEEESSSSSCTTCCEEGGGTCTTSC--SSCSEEEEETTEEEEEET-------------T
T ss_pred CCcEEEEeCC-----------EEEEEcCCCCCCCceEhhhhccCCC--CCccEEEEECCcEEEecC-------------C
Confidence 6889998883 456666443221 122211 223 222344445899999977 5
Q ss_pred cEEEEECCCC-cE-----EEccc-CCCCCC--cc-eeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCC
Q 006384 157 DFWMLDLKTN-QW-----EQLNL-KGCPSP--RS-GHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (647)
Q Consensus 157 dv~~yD~~t~-~W-----~~~~~-~~~P~~--R~-~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (647)
.+|+|+..++ +- ..+.. .|+|.. .. --+++.+ ++++|+|-| +..|+||..+
T Consensus 82 ~yw~~~~~~~~~~~~gyPk~i~~~~G~p~~~~~~~IDAA~~~~~~gk~yfFkG-----------~~ywr~d~~~ 144 (219)
T 1hxn_A 82 KVYVFLTKGGYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAG-----------RRLWWLDLKS 144 (219)
T ss_dssp EEEEEECSSSCEECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEET-----------TEEEEEEGGG
T ss_pred EEEEEeCCCCceecCCCCeehhhccCCCCcccccccceeEEecCCCEEEEEeC-----------CEEEEEeCCC
Confidence 6899986532 11 12221 233433 11 2233333 579999988 3578999765
No 238
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=81.04 E-value=50 Score=33.77 Aligned_cols=32 Identities=19% Similarity=0.365 Sum_probs=19.0
Q ss_pred cceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCe
Q 006384 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQE 112 (647)
Q Consensus 70 ~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~ 112 (647)
.-.++.+.| ++.+++.|+. + ..+.+||+.+..
T Consensus 30 ~V~~v~~s~--~g~~la~g~~--d-------g~v~iw~~~~~~ 61 (447)
T 3dw8_B 30 IISTVEFNH--SGELLATGDK--G-------GRVVIFQQEQEN 61 (447)
T ss_dssp SEEEEEECS--SSSEEEEEET--T-------SEEEEEEECC--
T ss_pred cEEEEEECC--CCCEEEEEcC--C-------CeEEEEEecCCC
Confidence 334555555 6778888873 2 357777877654
No 239
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=80.57 E-value=30 Score=38.49 Aligned_cols=88 Identities=13% Similarity=0.060 Sum_probs=46.2
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCcc
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQER 151 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~ 151 (647)
.++.+.| +++.++++..............++++|+.+.+-+.+........+..+....-+++.++|+..
T Consensus 64 ~~~~~Sp--Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-------- 133 (723)
T 1xfd_A 64 IRYEISP--DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-------- 133 (723)
T ss_dssp SEEEECT--TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET--------
T ss_pred ceEEECC--CCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC--------
Confidence 4556666 566666665311111112346899999998876666543211111111111114544444431
Q ss_pred ccccCcEEEEECCCCcEEEccc
Q 006384 152 FHHYKDFWMLDLKTNQWEQLNL 173 (647)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~ 173 (647)
+.++++|+.+.....+..
T Consensus 134 ----~~i~~~~~~~g~~~~~~~ 151 (723)
T 1xfd_A 134 ----NNIYYCAHVGKQAIRVVS 151 (723)
T ss_dssp ----TEEEEESSSSSCCEEEEC
T ss_pred ----CeEEEEECCCCceEEEec
Confidence 368888888877666544
No 240
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=80.52 E-value=1.1 Score=46.53 Aligned_cols=103 Identities=16% Similarity=0.087 Sum_probs=42.3
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCC--eEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDF 158 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~--~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv 158 (647)
++.||+.+. + ..++++|..+. .|+.-. . +. . .+.+..++.+|+.++.. ..+
T Consensus 9 ~~~v~~gs~---d-------g~v~a~d~~tG~~~W~~~~-~--~~-~--s~p~~~~g~~~v~~s~d-----------g~l 61 (369)
T 2hz6_A 9 ETLLFVSTL---D-------GSLHAVSKRTGSIKWTLKE-D--PV-L--QVPTHVEEPAFLPDPND-----------GSL 61 (369)
T ss_dssp TTEEEEEET---T-------SEEEEEETTTCCEEEEEEC-C--CS-C--CCC-----CCEEECTTT-----------CCE
T ss_pred CCEEEEEcC---C-------CEEEEEECCCCCEEEEecC-C--Cc-e--ecceEcCCCEEEEeCCC-----------CEE
Confidence 566766543 1 36899998876 577543 1 11 1 12233456677776421 458
Q ss_pred EEEECCCC--cEEEcccCCCCCCcceeEEEE-ECCEEEEEecccCCCCceeeeCcEEEEEcCCCc--eEE
Q 006384 159 WMLDLKTN--QWEQLNLKGCPSPRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQE 223 (647)
Q Consensus 159 ~~yD~~t~--~W~~~~~~~~P~~R~~h~~~~-~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~ 223 (647)
+.||..++ .|..-.. .+. ....+.++ .++.||+ |+. -..++.||+.+++ |+.
T Consensus 62 ~a~d~~tG~~~w~~~~~--~~~-~~~~sp~~~~~~~v~~-g~~---------dg~v~a~D~~tG~~~w~~ 118 (369)
T 2hz6_A 62 YTLGSKNNEGLTKLPFT--IPE-LVQASPCRSSDGILYM-GKK---------QDIWYVIDLLTGEKQQTL 118 (369)
T ss_dssp EEC-----CCSEECSCC--HHH-HHTTCSCC-----CCC-CEE---------EEEEEEECCC--------
T ss_pred EEEECCCCceeeeeecc--Ccc-ccccCceEecCCEEEE-EeC---------CCEEEEEECCCCcEEEEe
Confidence 89998765 4653211 010 00111112 3444543 332 2468899988654 654
No 241
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=80.29 E-value=6.7 Score=37.82 Aligned_cols=96 Identities=15% Similarity=0.140 Sum_probs=50.3
Q ss_pred ECCEEEEEeCCcCCCCCccccccCcEEEEECCC----CcEEE----ccc--CCCCCC----cceeEEEEE--CCEEEEEe
Q 006384 133 WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT----NQWEQ----LNL--KGCPSP----RSGHRMVLY--KHKIIVFG 196 (647)
Q Consensus 133 ~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t----~~W~~----~~~--~~~P~~----R~~h~~~~~--~~~lyv~G 196 (647)
..+.+|+|-| +.+|+||..+ ..... +.. .++|.. ... ++..+ ++++|+|-
T Consensus 69 ~~g~~~fFkg-------------~~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~ID-AA~~~~~~gk~yfFk 134 (225)
T 3oyo_A 69 EASEAYVFSG-------------NHSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSID-SAFRSTKGKEVYLFK 134 (225)
T ss_dssp STTEEEEEET-------------TEEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCC-EEEECSSTTEEEEEE
T ss_pred CCCeEEEEcC-------------CEEEEEecccccCCCceecCchhhhhcCCCCCCcccccccc-eEEEECCCCcEEEEe
Confidence 3799999987 4689997643 22211 111 112321 122 23332 68999998
Q ss_pred cccCCCCceeeeCcEEEEEcCCCceEEeccCCCC-CCCC------CceeeeEEE--eCCEEEEEecc
Q 006384 197 GFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGS-MWPS------PRSGFQFFV--YQDEVFLYGGY 254 (647)
Q Consensus 197 G~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~-~~P~------~R~~~s~~~--~~~~Iyv~GG~ 254 (647)
| +..|+||....+...- +.+-. .+|. +..--++.. .++++|+|-|.
T Consensus 135 G-----------~~yw~~d~~~~~~~~g-Pk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG~ 189 (225)
T 3oyo_A 135 G-----------NKYVRIAYDSKQLVGN-IRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKGQ 189 (225)
T ss_dssp T-----------TEEEEEETTTTEEEEE-EEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEETT
T ss_pred C-----------CeEEEEECCCCeecCC-CcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEECC
Confidence 8 3578998766544331 11000 0121 222223334 37899999874
No 242
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=80.13 E-value=47 Score=32.60 Aligned_cols=117 Identities=9% Similarity=0.094 Sum_probs=60.2
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCC
Q 006384 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 71 ~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~ 149 (647)
-+.+++.+ ++.|||.... .. ...+++|++.+.+.+.+... |..+.....+.. ++.+|+.--
T Consensus 74 p~gia~~~--dG~l~vad~~---~~----~~~v~~~d~~~g~~~~~~~~--~~~~~~~g~~~~~~~~~~v~d~------- 135 (306)
T 2p4o_A 74 VSGLAFTS--NGDLVATGWN---AD----SIPVVSLVKSDGTVETLLTL--PDAIFLNGITPLSDTQYLTADS------- 135 (306)
T ss_dssp EEEEEECT--TSCEEEEEEC---TT----SCEEEEEECTTSCEEEEEEC--TTCSCEEEEEESSSSEEEEEET-------
T ss_pred ceeEEEcC--CCcEEEEecc---CC----cceEEEEcCCCCeEEEEEeC--CCccccCcccccCCCcEEEEEC-------
Confidence 34455554 4567765431 00 01478899888887765432 334444444433 456777532
Q ss_pred ccccccCcEEEEECCCCc---EEEcccC--CCCCC--cceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCC
Q 006384 150 ERFHHYKDFWMLDLKTNQ---WEQLNLK--GCPSP--RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~---W~~~~~~--~~P~~--R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (647)
....+|++|+.+.. |..-... ..+.. .....+..-++.||+.-- ..+.|++|++..
T Consensus 136 ----~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~---------~~~~I~~~~~~~ 198 (306)
T 2p4o_A 136 ----YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNT---------EKMLLLRIPVDS 198 (306)
T ss_dssp ----TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEET---------TTTEEEEEEBCT
T ss_pred ----CCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeC---------CCCEEEEEEeCC
Confidence 12579999987642 2111100 01111 112223333567887542 236789999864
No 243
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=79.97 E-value=48 Score=32.60 Aligned_cols=194 Identities=11% Similarity=0.090 Sum_probs=95.2
Q ss_pred eeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCC
Q 006384 99 VYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC 176 (647)
Q Consensus 99 ~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~ 176 (647)
....+|.+|+.+.+-+.+. ......+ +++.++|....... ....+|++|+.++....+.. .
T Consensus 41 ~~~~l~~~d~~~~~~~~l~---------~~~~~~~SpDg~~la~~~~~~~~------~~~~l~~~~~~~g~~~~l~~--~ 103 (347)
T 2gop_A 41 YENTIVIENLKNNARRFIE---------NATMPRISPDGKKIAFMRANEEK------KVSEIWVADLETLSSKKILE--A 103 (347)
T ss_dssp EEEEEEEEETTTCCEEEEE---------SCEEEEECTTSSEEEEEEEETTT------TEEEEEEEETTTTEEEEEEE--E
T ss_pred ccceEEEEeCCCCceEEcc---------cCCCeEECCCCCEEEEEEeccCC------CcceEEEEECCCCceEEEEc--C
Confidence 4568999999988766651 1112233 34433443321110 12469999999888777654 1
Q ss_pred CCCcceeEEEEE--CCEEEEEecccCC----------------CC--ceeeeCcEEEEEcCCCce-EEeccCCCCCCCCC
Q 006384 177 PSPRSGHRMVLY--KHKIIVFGGFYDT----------------LR--EVRYYNDLYVFDLDQFKW-QEIKPRFGSMWPSP 235 (647)
Q Consensus 177 P~~R~~h~~~~~--~~~lyv~GG~~~~----------------~~--~~~~~~dv~~yD~~t~~W-~~v~~~~~~~~P~~ 235 (647)
+. .....+ +++.++|...... +. .......++++|+.+.+. ..+.. +
T Consensus 104 ~~----~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~------~-- 171 (347)
T 2gop_A 104 KN----IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK------P-- 171 (347)
T ss_dssp SE----EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE------E--
T ss_pred CC----ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC------C--
Confidence 21 223333 4544444432100 00 000135799999988876 55533 1
Q ss_pred ceeeeEEEeCCEEEEEecccCCCCCcccCCCCCce-eeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecc
Q 006384 236 RSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGII-HSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314 (647)
Q Consensus 236 R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~-~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG 314 (647)
....++...+.|++.+..... ..... ...+|.+| +..+..+... .......-+++.++|++
T Consensus 172 -~~~~~~~spdg~~~~~~~~~~--------~~~~~~~~~l~~~d--~~~~~~l~~~-------~~~~~~spdg~~l~~~~ 233 (347)
T 2gop_A 172 -RFSSGIWHRDKIVVNVPHREI--------IPQYFKFWDIYIWE--DGKEEKMFEK-------VSFYAVDSDGERILLYG 233 (347)
T ss_dssp -TTCEEEEETTEEEEEEECCCS--------SCCSSCCEEEEEEE--TTEEEEEEEE-------ESEEEEEECSSCEEEEE
T ss_pred -CcccccCCCCeEEEEEecccc--------cccccccccEEEeC--CCceEEeccC-------cceeeECCCCCEEEEEE
Confidence 122333444445555533211 00002 45789999 6677766431 11122244666555554
Q ss_pred eeccccCccccccccCCcEEEEECCCCcEEEeE
Q 006384 315 VVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (647)
Q Consensus 315 ~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (647)
..... .......||++| +..+..+.
T Consensus 234 ~~~~~------~~~~~~~l~~~d--~~~~~~l~ 258 (347)
T 2gop_A 234 KPEKK------YMSEHNKLYIYD--GKEVMGIL 258 (347)
T ss_dssp CCSSS------CCCSSCEEEEEC--SSCEEESS
T ss_pred ccccC------CccccceEEEEC--CCceEecc
Confidence 32210 011245789998 55555443
No 244
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=79.76 E-value=47 Score=32.34 Aligned_cols=89 Identities=11% Similarity=0.274 Sum_probs=44.2
Q ss_pred cEEEEECC-CCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEEEEECCCC-cEEEcccCCCCC
Q 006384 102 DLYRYDVE-KQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN-QWEQLNLKGCPS 178 (647)
Q Consensus 102 dl~~yd~~-~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~-~W~~~~~~~~P~ 178 (647)
.+++||+. ...|+..... + ...+.+.. ++.||+.. . -..+++||+... .|..... .
T Consensus 118 ~l~~~d~~g~~~~~~~~~~----~-~~~~~~~~~~g~l~vgt-~-----------~~~l~~~d~~g~~~~~~~~~----~ 176 (330)
T 3hxj_A 118 HLYAINTDGTEKWRFKTKK----A-IYATPIVSEDGTIYVGS-N-----------DNYLYAINPDGTEKWRFKTN----D 176 (330)
T ss_dssp EEEEECTTSCEEEEEECSS----C-CCSCCEECTTSCEEEEC-T-----------TSEEEEECTTSCEEEEEECS----S
T ss_pred EEEEEcCCCCEEEEEcCCC----c-eeeeeEEcCCCEEEEEc-C-----------CCEEEEECCCCCEeEEEecC----C
Confidence 58888887 3356654321 1 12222333 56677632 1 145888988722 2544321 1
Q ss_pred CcceeEEEE-ECCEEEEEecccCCCCceeeeCcEEEEEcCC-CceEEe
Q 006384 179 PRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ-FKWQEI 224 (647)
Q Consensus 179 ~R~~h~~~~-~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t-~~W~~v 224 (647)
... .+.+. -++.||+.. ..+++||... ..|...
T Consensus 177 ~~~-~~~~~d~~g~l~v~t------------~~l~~~d~~g~~~~~~~ 211 (330)
T 3hxj_A 177 AIT-SAASIGKDGTIYFGS------------DKVYAINPDGTEKWNFY 211 (330)
T ss_dssp CCC-SCCEECTTCCEEEES------------SSEEEECTTSCEEEEEC
T ss_pred Cce-eeeEEcCCCEEEEEe------------CEEEEECCCCcEEEEEc
Confidence 121 22333 366777643 3477888432 346543
No 245
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=79.66 E-value=58 Score=33.32 Aligned_cols=67 Identities=16% Similarity=0.166 Sum_probs=38.7
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDF 158 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv 158 (647)
++.+++.|+. + ..+..||+.+.+-...-.. +.......++.+ ++.+++.|+.. ..+
T Consensus 181 ~~~~l~~~~~--d-------~~i~iwd~~~~~~~~~~~~--~~h~~~v~~~~~s~~~~~l~s~~~d-----------g~i 238 (437)
T 3gre_A 181 EKSLLVALTN--L-------SRVIIFDIRTLERLQIIEN--SPRHGAVSSICIDEECCVLILGTTR-----------GII 238 (437)
T ss_dssp SCEEEEEEET--T-------SEEEEEETTTCCEEEEEEC--CGGGCCEEEEEECTTSCEEEEEETT-----------SCE
T ss_pred CCCEEEEEeC--C-------CeEEEEeCCCCeeeEEEcc--CCCCCceEEEEECCCCCEEEEEcCC-----------CeE
Confidence 4677777772 2 4788999987654322111 111122233334 46677777643 358
Q ss_pred EEEECCCCcEE
Q 006384 159 WMLDLKTNQWE 169 (647)
Q Consensus 159 ~~yD~~t~~W~ 169 (647)
.+||+.+....
T Consensus 239 ~iwd~~~~~~~ 249 (437)
T 3gre_A 239 DIWDIRFNVLI 249 (437)
T ss_dssp EEEETTTTEEE
T ss_pred EEEEcCCccEE
Confidence 89999886543
No 246
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=78.83 E-value=19 Score=34.32 Aligned_cols=103 Identities=20% Similarity=0.436 Sum_probs=57.9
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCe---EEEecCCCCCCC-cceeEEEEE--CCEEEEEeCCcCCCCCccccc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE---WKVISSPNSPPP-RSAHQAVSW--KNYLYIFGGEFTSPNQERFHH 154 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~---W~~l~s~~~P~~-R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~ 154 (647)
++++|+|=| +.+|+|+..+.. =+.|.....|.. ..-.++... ++++|+|-|
T Consensus 87 ~~k~yfFkG-----------~~yW~y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG------------ 143 (218)
T 1gen_A 87 EEKAVFFAG-----------NEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG------------ 143 (218)
T ss_dssp TTEEEEEET-----------TEEEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEET------------
T ss_pred CCEEEEEeC-----------CEEEEEcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEEC------------
Confidence 589999988 367899852100 011222122221 122344443 689999987
Q ss_pred cCcEEEEECCCCcEE-----Ecc--cCCCCCCcceeEEEEEC--CEEEEEecccCCCCceeeeCcEEEEEcCCCc
Q 006384 155 YKDFWMLDLKTNQWE-----QLN--LKGCPSPRSGHRMVLYK--HKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (647)
Q Consensus 155 ~~dv~~yD~~t~~W~-----~~~--~~~~P~~R~~h~~~~~~--~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (647)
+..|+||..+++-. .+. -.++| ..-.++..+. +++|+|-| +..|.||..+..
T Consensus 144 -~~ywr~d~~~~~v~~gyPr~i~~~w~g~p--~~idaAf~~~~~g~~YfFkg-----------~~y~~~~~~~~~ 204 (218)
T 1gen_A 144 -DKFWRYNEVKKKMDPGFPKLIADAWNAIP--DNLDAVVDLQGGGHSYFFKG-----------AYYLKLENQSLK 204 (218)
T ss_dssp -TEEEEEETTTTEECSSCCEEHHHHSSSCC--SSCSEEEECTTTCEEEEEET-----------TEEEEEETTEEE
T ss_pred -CEEEEEECccccccCCCCcchhhccCCCC--CCCCEEEEEcCCCcEEEEEC-----------CEEEEEECCcee
Confidence 56899998776422 111 11222 2334555554 89999977 356778775543
No 247
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=78.69 E-value=97 Score=35.95 Aligned_cols=110 Identities=11% Similarity=0.122 Sum_probs=57.5
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCcc
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQER 151 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~ 151 (647)
.++++.| ++.+++.|+. + ..+..|+..+.+-..... ....-.+++...+.+++.|+..
T Consensus 21 ~~lafsp--dg~~lAsgs~--D-------g~I~lw~~~~~~~~~~~~----~~~~V~~l~fspg~~L~S~s~D------- 78 (902)
T 2oaj_A 21 IAAAFDF--TQNLLAIATV--T-------GEVHIYGQQQVEVVIKLE----DRSAIKEMRFVKGIYLVVINAK------- 78 (902)
T ss_dssp EEEEEET--TTTEEEEEET--T-------SEEEEECSTTCEEEEECS----SCCCEEEEEEETTTEEEEEETT-------
T ss_pred EEEEECC--CCCEEEEEeC--C-------CEEEEEeCCCcEEEEEcC----CCCCEEEEEEcCCCEEEEEECc-------
Confidence 4556666 6778888873 2 367778877655433211 1111222333335555555432
Q ss_pred ccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCce
Q 006384 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (647)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W 221 (647)
+.+.+||+.+.+....-. .+ .. -.++.+ ++.+++.|+.+ ..|.+||+.+..-
T Consensus 79 ----~~v~lWd~~~~~~~~~~~--~~-~~--V~~v~~sp~g~~l~sgs~d---------g~V~lwd~~~~~~ 132 (902)
T 2oaj_A 79 ----DTVYVLSLYSQKVLTTVF--VP-GK--ITSIDTDASLDWMLIGLQN---------GSMIVYDIDRDQL 132 (902)
T ss_dssp ----CEEEEEETTTCSEEEEEE--CS-SC--EEEEECCTTCSEEEEEETT---------SCEEEEETTTTEE
T ss_pred ----CeEEEEECCCCcEEEEEc--CC-CC--EEEEEECCCCCEEEEEcCC---------CcEEEEECCCCcc
Confidence 468888988775432211 11 11 122222 45555666542 4578889887654
No 248
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=78.66 E-value=73 Score=33.91 Aligned_cols=187 Identities=6% Similarity=0.011 Sum_probs=87.7
Q ss_pred EEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCcc
Q 006384 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQER 151 (647)
Q Consensus 74 ~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~ 151 (647)
+++.| ++.+++.|+. + ..+..||........+.... ..-..+.+ ++.+++.|+..
T Consensus 350 ~~~s~--~g~~l~~~~~--d-------g~v~~~~~~~~~~~~~~~~~-----~~v~~~~~s~dg~~l~~~~~d------- 406 (577)
T 2ymu_A 350 VAFSP--DGQTIASASD--D-------KTVKLWNRNGQLLQTLTGHS-----SSVRGVAFSPDGQTIASASDD------- 406 (577)
T ss_dssp EEECT--TSSEEEEEET--T-------SEEEEEETTCCEEEEEECCS-----SCEEEEEECTTSSCEEEEETT-------
T ss_pred EEECC--CCCEEEEEeC--C-------CEEEEEcCCCCEEEEecCCC-----CCeEEEEECCCCCEEEEEeCC-------
Confidence 44444 4556666652 1 24666776555444443211 11222333 45566666532
Q ss_pred ccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEE-ECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCC
Q 006384 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGS 230 (647)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~-~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~ 230 (647)
..+.+||.....-..+.. ...... ++++ -++++++.|+.+ ..+.+||.....-..+...
T Consensus 407 ----~~v~~~~~~~~~~~~~~~---~~~~v~-~~~~s~d~~~l~~~~~d---------~~v~~w~~~~~~~~~~~~~--- 466 (577)
T 2ymu_A 407 ----KTVKLWNRNGQLLQTLTG---HSSSVW-GVAFSPDDQTIASASDD---------KTVKLWNRNGQLLQTLTGH--- 466 (577)
T ss_dssp ----SEEEEECTTCCEEEEEEC---CSSCEE-EEEECTTSSEEEEEETT---------SEEEEEETTSCEEEEEECC---
T ss_pred ----CEEEEEeCCCCEEEEecC---CCCCeE-EEEECCCCCEEEEEcCC---------CEEEEEECCCCEEEEEcCC---
Confidence 346777754433333222 112211 1222 256666666642 3567788655433333222
Q ss_pred CCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCe
Q 006384 231 MWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKR 308 (647)
Q Consensus 231 ~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~ 308 (647)
...-.+++.. ++.+++.|+.++. +.+||.....-..+.. .... -.++++. +++
T Consensus 467 ----~~~v~~~~~spd~~~las~~~d~~----------------i~iw~~~~~~~~~~~~----h~~~-v~~l~~s~dg~ 521 (577)
T 2ymu_A 467 ----SSSVRGVAFSPDGQTIASASDDKT----------------VKLWNRNGQLLQTLTG----HSSS-VRGVAFSPDGQ 521 (577)
T ss_dssp ----SSCEEEEEECTTSCEEEEEETTSE----------------EEEEETTSCEEEEEEC----CSSC-EEEEEECTTSS
T ss_pred ----CCCEEEEEEcCCCCEEEEEeCCCE----------------EEEEcCCCCEEEEEeC----CCCC-EEEEEEcCCCC
Confidence 1111223333 6677777776544 6677765433333321 1111 1223332 566
Q ss_pred EEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 309 ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 309 iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
+++.|+.. ..|.+||.....
T Consensus 522 ~l~s~~~d--------------g~v~lwd~~~~~ 541 (577)
T 2ymu_A 522 TIASASDD--------------KTVKLWNRNGQL 541 (577)
T ss_dssp CEEEEETT--------------SEEEEECTTSCE
T ss_pred EEEEEECc--------------CEEEEEeCCCCE
Confidence 77776642 347888865443
No 249
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=78.32 E-value=25 Score=34.49 Aligned_cols=90 Identities=16% Similarity=0.264 Sum_probs=44.4
Q ss_pred EEEEECCCC-eEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECC-CCcEEEcccCCCCCCc
Q 006384 103 LYRYDVEKQ-EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLK-TNQWEQLNLKGCPSPR 180 (647)
Q Consensus 103 l~~yd~~~~-~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~-t~~W~~~~~~~~P~~R 180 (647)
+++||+... .|..... ... ....+..++.||+... ...+++||+. ...|..... ...
T Consensus 80 l~~~d~~g~~~~~~~~~----~~~-~~~~~~~~~~l~v~t~------------~~~l~~~d~~g~~~~~~~~~----~~~ 138 (330)
T 3hxj_A 80 VYAINPDGTEKWRFDTK----KAI-VSDFTIFEDILYVTSM------------DGHLYAINTDGTEKWRFKTK----KAI 138 (330)
T ss_dssp EEEECCCGGGGGGSCC----------CCEEEETTEEEEECT------------TSEEEEECTTSCEEEEEECS----SCC
T ss_pred EEEECCCCcEEEEEECC----CCc-ccCceEECCEEEEEec------------CCEEEEEcCCCCEEEEEcCC----Cce
Confidence 888987432 3432111 111 1122334888887432 1458889987 334654432 111
Q ss_pred ceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCC-CceEEe
Q 006384 181 SGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ-FKWQEI 224 (647)
Q Consensus 181 ~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t-~~W~~v 224 (647)
..+.+.. ++.||+. .. -..++.||+.. ..|...
T Consensus 139 -~~~~~~~~~g~l~vg-t~---------~~~l~~~d~~g~~~~~~~ 173 (330)
T 3hxj_A 139 -YATPIVSEDGTIYVG-SN---------DNYLYAINPDGTEKWRFK 173 (330)
T ss_dssp -CSCCEECTTSCEEEE-CT---------TSEEEEECTTSCEEEEEE
T ss_pred -eeeeEEcCCCEEEEE-cC---------CCEEEEECCCCCEeEEEe
Confidence 1222334 6677763 21 14688898872 235543
No 250
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=77.16 E-value=42 Score=32.83 Aligned_cols=103 Identities=8% Similarity=0.031 Sum_probs=51.5
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-C-CEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-K-HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWP 233 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~-~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P 233 (647)
..|++||+.++++..+. .... ....+.. + ..||+....... ...+.+++|++............. .+
T Consensus 169 ~~v~~~d~~~g~~~~~~--~~~~---p~gl~~spdg~~lyv~~~~~~~----~~~~~i~~~~~~~~~l~~~~~~~~--~~ 237 (305)
T 3dr2_A 169 HSVYRLPPDGSPLQRMA--DLDH---PNGLAFSPDEQTLYVSQTPEQG----HGSVEITAFAWRDGALHDRRHFAS--VP 237 (305)
T ss_dssp EEEEEECSSSCCCEEEE--EESS---EEEEEECTTSSEEEEEECCC-------CCCEEEEEEEETTEEEEEEEEEC--CS
T ss_pred CeEEEEcCCCCcEEEEe--cCCC---CcceEEcCCCCEEEEEecCCcC----CCCCEEEEEEecCCCccCCeEEEE--CC
Confidence 57999999888877664 1111 1233333 3 357776432100 012578899887554221111100 01
Q ss_pred CCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEee
Q 006384 234 SPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (647)
Q Consensus 234 ~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~ 288 (647)
. ..-.++++. ++.||+..+ +.|++|++.......+.
T Consensus 238 ~-~~pdgi~~d~~G~lwv~~~------------------~gv~~~~~~g~~~~~~~ 274 (305)
T 3dr2_A 238 D-GLPDGFCVDRGGWLWSSSG------------------TGVCVFDSDGQLLGHIP 274 (305)
T ss_dssp S-SCCCSEEECTTSCEEECCS------------------SEEEEECTTSCEEEEEE
T ss_pred C-CCCCeEEECCCCCEEEecC------------------CcEEEECCCCCEEEEEE
Confidence 0 011123333 566766431 12889999776666654
No 251
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=76.17 E-value=64 Score=31.98 Aligned_cols=96 Identities=11% Similarity=0.027 Sum_probs=48.5
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCC
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~ 179 (647)
.+++||+.+.+.+.+.......+......+.+ ++.+|+... ..... .....+|+|+ +.+...+... ..
T Consensus 110 gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~-~~~~~----~~~~~l~~~~--~g~~~~~~~~---~~ 179 (326)
T 2ghs_A 110 GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTM-GRKAE----TGAGSIYHVA--KGKVTKLFAD---IS 179 (326)
T ss_dssp EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEE-ETTCC----TTCEEEEEEE--TTEEEEEEEE---ES
T ss_pred CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeC-CCcCC----CCceEEEEEe--CCcEEEeeCC---Cc
Confidence 48999999988887654211111112222233 567776432 11100 1235799999 5666554321 01
Q ss_pred cceeEEEEE-CC-EEEEEecccCCCCceeeeCcEEEEEcC
Q 006384 180 RSGHRMVLY-KH-KIIVFGGFYDTLREVRYYNDLYVFDLD 217 (647)
Q Consensus 180 R~~h~~~~~-~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~ 217 (647)
.....+.. ++ .||+.... .+.|++||+.
T Consensus 180 -~~~~i~~s~dg~~lyv~~~~---------~~~I~~~d~~ 209 (326)
T 2ghs_A 180 -IPNSICFSPDGTTGYFVDTK---------VNRLMRVPLD 209 (326)
T ss_dssp -SEEEEEECTTSCEEEEEETT---------TCEEEEEEBC
T ss_pred -ccCCeEEcCCCCEEEEEECC---------CCEEEEEEcc
Confidence 11223333 33 67776432 2568899875
No 252
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=75.92 E-value=65 Score=31.88 Aligned_cols=102 Identities=12% Similarity=0.094 Sum_probs=55.2
Q ss_pred CEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEE
Q 006384 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFW 159 (647)
Q Consensus 82 ~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~ 159 (647)
+.+++.|+. + ..+..||+.+.+-..+.... .... ..++.+ ++.+++.|+.. ..+.
T Consensus 139 ~~~l~s~s~--d-------g~i~~wd~~~~~~~~~~~~~--~~~~-i~~~~~~pdg~~lasg~~d-----------g~i~ 195 (343)
T 3lrv_A 139 TEYFIWADN--R-------GTIGFQSYEDDSQYIVHSAK--SDVE-YSSGVLHKDSLLLALYSPD-----------GILD 195 (343)
T ss_dssp CCEEEEEET--T-------CCEEEEESSSSCEEEEECCC--SSCC-CCEEEECTTSCEEEEECTT-----------SCEE
T ss_pred CCEEEEEeC--C-------CcEEEEECCCCcEEEEEecC--CCCc-eEEEEECCCCCEEEEEcCC-----------CEEE
Confidence 456666662 2 36888999887664443221 1111 223333 56777777743 4588
Q ss_pred EEECCCCcEE--EcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCc
Q 006384 160 MLDLKTNQWE--QLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (647)
Q Consensus 160 ~yD~~t~~W~--~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (647)
+||+.+..-. .+.. . ....-.++.+ ++.+++.|+ . +.+.+||+.+..
T Consensus 196 iwd~~~~~~~~~~~~~--~--h~~~v~~l~fs~~g~~l~s~~-~---------~~v~iwd~~~~~ 246 (343)
T 3lrv_A 196 VYNLSSPDQASSRFPV--D--EEAKIKEVKFADNGYWMVVEC-D---------QTVVCFDLRKDV 246 (343)
T ss_dssp EEESSCTTSCCEECCC--C--TTSCEEEEEECTTSSEEEEEE-S---------SBEEEEETTSST
T ss_pred EEECCCCCCCccEEec--c--CCCCEEEEEEeCCCCEEEEEe-C---------CeEEEEEcCCCC
Confidence 9999877532 2211 0 1111122223 455666665 1 268889987753
No 253
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=75.91 E-value=64 Score=31.78 Aligned_cols=216 Identities=8% Similarity=-0.070 Sum_probs=105.4
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCC-CCcceeEEEEE--CCEEEEEeCCcCCCC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSP-PPRSAHQAVSW--KNYLYIFGGEFTSPN 148 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P-~~R~~ha~v~~--~~~iyv~GG~~~~~~ 148 (647)
+.+++.+. ++.|||.-.. +.+++||+.+...+.+...... ....-+.++.. ++.|||.-.......
T Consensus 83 ~gi~~~~~-~g~l~v~d~~----------~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~ 151 (322)
T 2fp8_A 83 YDISYNLQ-NNQLYIVDCY----------YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDD 151 (322)
T ss_dssp EEEEEETT-TTEEEEEETT----------TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCT
T ss_pred ceEEEcCC-CCcEEEEECC----------CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccc
Confidence 44555521 4788886431 2378888887766555321100 01122333333 467888643210000
Q ss_pred Cc-c-----ccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-C-CEEEEEecccCCCCceeeeCcEEEEEcCCC-
Q 006384 149 QE-R-----FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-K-HKIIVFGGFYDTLREVRYYNDLYVFDLDQF- 219 (647)
Q Consensus 149 ~~-~-----~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~-~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~- 219 (647)
.. . ......+++||+.+.....+... . .....+++- + +.|||.-.. .+.|++|++...
T Consensus 152 ~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~---~~p~gia~~~dg~~lyv~d~~---------~~~I~~~~~~~~~ 218 (322)
T 2fp8_A 152 RGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE-L---HVPGGAEVSADSSFVLVAEFL---------SHQIVKYWLEGPK 218 (322)
T ss_dssp TCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE-E---SCCCEEEECTTSSEEEEEEGG---------GTEEEEEESSSTT
T ss_pred cccceehcccCCCceEEEEeCCCCEEEEeccC-C---ccCcceEECCCCCEEEEEeCC---------CCeEEEEECCCCc
Confidence 00 0 00125699999988876554321 1 111233433 3 358876332 357899988752
Q ss_pred --ceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCC
Q 006384 220 --KWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGP 296 (647)
Q Consensus 220 --~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~ 296 (647)
.+..+... +.| ..+++. ++.|||......... ........+++||+....-..+....-.+ .
T Consensus 219 ~~~~~~~~~~-----~gP---~gi~~d~~G~l~va~~~~~~~~------~~~~~~~~v~~~d~~G~~~~~~~~~~g~~-~ 283 (322)
T 2fp8_A 219 KGTAEVLVKI-----PNP---GNIKRNADGHFWVSSSEELDGN------MHGRVDPKGIKFDEFGNILEVIPLPPPFA-G 283 (322)
T ss_dssp TTCEEEEEEC-----SSE---EEEEECTTSCEEEEEEEETTSS------TTSCEEEEEEEECTTSCEEEEEECCTTTT-T
T ss_pred CCccceEEeC-----CCC---CCeEECCCCCEEEEecCccccc------ccCCCccEEEEECCCCCEEEEEECCCCCc-c
Confidence 33333322 211 223333 567888754321100 00112456899999766555554321111 1
Q ss_pred ceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCC
Q 006384 297 RAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (647)
Q Consensus 297 R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (647)
....+++..+++|||.... .+.|.+|++..
T Consensus 284 ~~~~~~~~~~g~L~v~~~~--------------~~~i~~~~~~~ 313 (322)
T 2fp8_A 284 EHFEQIQEHDGLLYIGTLF--------------HGSVGILVYDK 313 (322)
T ss_dssp SCCCEEEEETTEEEEECSS--------------CSEEEEEEC--
T ss_pred ccceEEEEeCCEEEEeecC--------------CCceEEEeccc
Confidence 2223445568888887532 35688888754
No 254
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=75.75 E-value=58 Score=31.23 Aligned_cols=81 Identities=12% Similarity=0.196 Sum_probs=43.4
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCC
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~ 178 (647)
+.+.++|+.+++...+-... .....-.++.+ ++.+++.|+.. ..+.+||+.+++-..... ...
T Consensus 45 ~tV~iWd~~tg~~~~~~~~~--~~~~~V~~v~~~~~~~~l~sgs~D-----------g~v~iw~~~~~~~~~~~~--~h~ 109 (318)
T 4ggc_A 45 NSVYLWSASSGDILQLLQME--QPGEYISSVAWIKEGNYLAVGTSS-----------AEVQLWDVQQQKRLRNMT--SHS 109 (318)
T ss_dssp TEEEEEETTTCCEEEEEECC--STTCCEEEEEECTTSSEEEEEETT-----------SEEEEEETTTTEEEEEEE--CCS
T ss_pred CEEEEEECCCCCEEEEEEec--CCCCeEEEEEECCCCCEEEEEECC-----------CcEEEeecCCceeEEEec--Ccc
Confidence 36899999988765443221 11112223333 46677777743 457889998876433222 122
Q ss_pred CcceeEEEEECCEEEEEecc
Q 006384 179 PRSGHRMVLYKHKIIVFGGF 198 (647)
Q Consensus 179 ~R~~h~~~~~~~~lyv~GG~ 198 (647)
.+ ..+....+.+++.|+.
T Consensus 110 ~~--~~~~~~~~~~l~s~~~ 127 (318)
T 4ggc_A 110 AR--VGSLSWNSYILSSGSR 127 (318)
T ss_dssp SC--EEEEEEETTEEEEEET
T ss_pred ce--EEEeecCCCEEEEEec
Confidence 22 2233445556666654
No 255
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=75.34 E-value=19 Score=33.73 Aligned_cols=102 Identities=18% Similarity=0.419 Sum_probs=57.8
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeE---EEecCC--CCCCCcceeEEEEE--CCEEEEEeCCcCCCCCcccc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW---KVISSP--NSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFH 153 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W---~~l~s~--~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~ 153 (647)
++++|+|-| +.+|+|+..+... +.|... .+|..+ --++... ++++|+|-|
T Consensus 61 ~g~~yfFkg-----------~~yw~~~~~~~~~gyPk~I~~~~~glP~~~-IDAA~~~~~~g~~yfFkG----------- 117 (196)
T 3c7x_A 61 DGKFVFFKG-----------DKHWVFDEASLEPGYPKHIKELGRGLPTDK-IDAALFWMPNGKTYFFRG----------- 117 (196)
T ss_dssp TSCEEEEET-----------TEEEEEETTEECTTCSEEGGGTCBSCCSSC-CSEEEEETTTTEEEEEET-----------
T ss_pred CCcEEEecC-----------CEEEEEeCCcccCCCCeEhhhcCCCCCCCc-ccEEEEEccCCEEEEEEC-----------
Confidence 688999988 3678888542110 122221 133222 2233333 589999987
Q ss_pred ccCcEEEEECCCCcEE-----Eccc-CCCCCCcceeEEEEE-CC-EEEEEecccCCCCceeeeCcEEEEEcCCCc
Q 006384 154 HYKDFWMLDLKTNQWE-----QLNL-KGCPSPRSGHRMVLY-KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (647)
Q Consensus 154 ~~~dv~~yD~~t~~W~-----~~~~-~~~P~~R~~h~~~~~-~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (647)
+..|+||..+++-. .+.. .++|. .-.++..+ ++ ++|+|-| +..|.||..+.+
T Consensus 118 --~~yw~yd~~~~~v~~gyPk~i~~~~gip~--~idaAf~~~~~~~~YfFkg-----------~~y~r~d~~~~~ 177 (196)
T 3c7x_A 118 --NKYYRFNEELRAVDSEYPKNIKVWEGIPE--SPRGSFMGSDEVFTYFYKG-----------NKYWKFNNQKLK 177 (196)
T ss_dssp --TEEEEEETTTTEECTTCSEEGGGSBTCCS--SCSEEEECTTSSEEEEEET-----------TEEEEEETTTTE
T ss_pred --CEEEEEeCCcccccCCCCccHHHCCCcCC--CcceeEEecCCCEEEEEEC-----------CEEEEEECCcce
Confidence 56899998775422 1211 12232 22344444 44 8999977 357899987653
No 256
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=74.33 E-value=14 Score=36.51 Aligned_cols=69 Identities=13% Similarity=0.129 Sum_probs=40.9
Q ss_pred CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCC
Q 006384 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSE 266 (647)
Q Consensus 189 ~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~ 266 (647)
++++|+.++. .+.|+++|+.+.+....-.. +....-+.+++. +..+|+.+....
T Consensus 10 ~~~~~v~~~~---------~~~v~~~d~~~~~~~~~~~~-----~~~~~~~~~~~s~dg~~~~v~~~~~~---------- 65 (349)
T 1jmx_B 10 GHEYMIVTNY---------PNNLHVVDVASDTVYKSCVM-----PDKFGPGTAMMAPDNRTAYVLNNHYG---------- 65 (349)
T ss_dssp TCEEEEEEET---------TTEEEEEETTTTEEEEEEEC-----SSCCSSCEEEECTTSSEEEEEETTTT----------
T ss_pred CCEEEEEeCC---------CCeEEEEECCCCcEEEEEec-----CCCCCCceeEECCCCCEEEEEeCCCC----------
Confidence 5678887764 35789999998876543322 110011233333 345777764332
Q ss_pred CCceeeeEEEEeCCCCeEEEe
Q 006384 267 KGIIHSDLWSLDPRTWEWSKV 287 (647)
Q Consensus 267 ~~~~~~dv~~yd~~t~~W~~v 287 (647)
.+++||+.+.+....
T Consensus 66 ------~i~~~d~~t~~~~~~ 80 (349)
T 1jmx_B 66 ------DIYGIDLDTCKNTFH 80 (349)
T ss_dssp ------EEEEEETTTTEEEEE
T ss_pred ------cEEEEeCCCCcEEEE
Confidence 388999988765543
No 257
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=73.48 E-value=71 Score=31.20 Aligned_cols=106 Identities=8% Similarity=-0.011 Sum_probs=57.6
Q ss_pred CEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCC
Q 006384 190 HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEK 267 (647)
Q Consensus 190 ~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~ 267 (647)
+.+++.|+.+ ..+.+||+.+.+-...-.. ....-.++... ++.+++.|+.++.
T Consensus 85 ~~~l~~~~~d---------g~i~v~d~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~l~s~~~dg~---------- 139 (366)
T 3k26_A 85 HPLLAVAGSR---------GIIRIINPITMQCIKHYVG------HGNAINELKFHPRDPNLLLSVSKDHA---------- 139 (366)
T ss_dssp CEEEEEEETT---------CEEEEECTTTCCEEEEEES------CCSCEEEEEECSSCTTEEEEEETTSC----------
T ss_pred CCEEEEecCC---------CEEEEEEchhceEeeeecC------CCCcEEEEEECCCCCCEEEEEeCCCe----------
Confidence 5677777753 3688888887653322111 11112223332 5677888887655
Q ss_pred CceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEecceeccccCccccccccCCcEEEEECCCC
Q 006384 268 GIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (647)
Q Consensus 268 ~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (647)
+.+||+.+..-...-.. .......-.++++. ++..++.|+.. ..|.+||+.+.
T Consensus 140 ------i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d--------------g~i~i~d~~~~ 193 (366)
T 3k26_A 140 ------LRLWNIQTDTLVAIFGG-VEGHRDEVLSADYDLLGEKIMSCGMD--------------HSLKLWRINSK 193 (366)
T ss_dssp ------EEEEETTTTEEEEEECS-TTSCSSCEEEEEECTTSSEEEEEETT--------------SCEEEEESCSH
T ss_pred ------EEEEEeecCeEEEEecc-cccccCceeEEEECCCCCEEEEecCC--------------CCEEEEECCCC
Confidence 88899887755443210 00111122233333 46677777642 45889998754
No 258
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=73.30 E-value=91 Score=32.34 Aligned_cols=18 Identities=6% Similarity=-0.031 Sum_probs=13.1
Q ss_pred eeeeEEEe-CCEEEEEecc
Q 006384 237 SGFQFFVY-QDEVFLYGGY 254 (647)
Q Consensus 237 ~~~s~~~~-~~~Iyv~GG~ 254 (647)
..|++++. ++.||.+|-.
T Consensus 303 ~~ht~alt~~G~v~~wG~n 321 (423)
T 3mvd_K 303 QHHTVILTTDLKCSVVGRP 321 (423)
T ss_dssp SSEEEEEETTCCEEEEECC
T ss_pred cCeEEEEeCCCcEEEEECC
Confidence 44666666 7899999854
No 259
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=73.04 E-value=85 Score=31.91 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=19.1
Q ss_pred CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEee
Q 006384 245 QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (647)
Q Consensus 245 ~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~ 288 (647)
++.+++.|+.++. +.+||+.+..-..+.
T Consensus 353 ~~~~l~s~s~dg~----------------v~iwd~~~~~~~~~~ 380 (447)
T 3dw8_B 353 SDSVVMTGSYNNF----------------FRMFDRNTKRDITLE 380 (447)
T ss_dssp TSSEEEEECSTTE----------------EEEEETTTCCEEEEE
T ss_pred CCCEEEEeccCCE----------------EEEEEcCCCcceeee
Confidence 5566677777654 788888877665543
No 260
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=71.22 E-value=1.1e+02 Score=32.42 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=13.1
Q ss_pred cceEEEEeccCCCEEEEEcC
Q 006384 70 SNCSLNINPLKETELILYGG 89 (647)
Q Consensus 70 ~~~s~~~~~~~~~~lyv~GG 89 (647)
..|++++.. ++.||.+|-
T Consensus 157 ~~hs~alt~--~G~vy~wG~ 174 (473)
T 3of7_A 157 DNMSCALFS--NGEVYAWGT 174 (473)
T ss_dssp SSEEEEEET--TSCEEEEEC
T ss_pred CCEEEEEeC--CCeEEEeeC
Confidence 456666664 689999994
No 261
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=71.02 E-value=52 Score=38.79 Aligned_cols=148 Identities=16% Similarity=0.107 Sum_probs=77.8
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEE-EEECCCCcEEEcccCCCCCCc
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFW-MLDLKTNQWEQLNLKGCPSPR 180 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~-~yD~~t~~W~~~~~~~~P~~R 180 (647)
.++.++..+.....+... +..+..+.... ++..+++++. -..+| +||+.+.....+.. ....
T Consensus 318 ~i~~~~~~~~~~~~~~~~--~~~~~~~~~~s-dg~~l~~~s~-----------~~~l~~~~d~~~~~~~~l~~---~~~~ 380 (1045)
T 1k32_A 318 QAFIQDVSGTYVLKVPEP--LRIRYVRRGGD-TKVAFIHGTR-----------EGDFLGIYDYRTGKAEKFEE---NLGN 380 (1045)
T ss_dssp EEEEECTTSSBEEECSCC--SCEEEEEECSS-SEEEEEEEET-----------TEEEEEEEETTTCCEEECCC---CCCS
T ss_pred EEEEEcCCCCceEEccCC--CcceEEeeeEc-CCCeEEEEEC-----------CCceEEEEECCCCCceEecC---Cccc
Confidence 678888887776655431 11122222222 5555555442 14688 99998887666542 1122
Q ss_pred ceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCC
Q 006384 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVS 259 (647)
Q Consensus 181 ~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~ 259 (647)
....+..-+++.+++++. -..++++|+.+.+-..+... ... ....++.. +++.+++++....
T Consensus 381 ~~~~~~SpDG~~la~~~~---------~~~v~~~d~~tg~~~~~~~~-----~~~-~v~~~~~SpDG~~la~~~~~~~-- 443 (1045)
T 1k32_A 381 VFAMGVDRNGKFAVVAND---------RFEIMTVDLETGKPTVIERS-----REA-MITDFTISDNSRFIAYGFPLKH-- 443 (1045)
T ss_dssp EEEEEECTTSSEEEEEET---------TSEEEEEETTTCCEEEEEEC-----SSS-CCCCEEECTTSCEEEEEEEECS--
T ss_pred eeeeEECCCCCEEEEECC---------CCeEEEEECCCCceEEeccC-----CCC-CccceEECCCCCeEEEEecCcc--
Confidence 222222225666666653 24789999998887766532 111 11222233 5666666654320
Q ss_pred CcccCCCCCceeeeEEEEeCCCCeEEEe
Q 006384 260 TDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (647)
Q Consensus 260 ~~~~~~~~~~~~~dv~~yd~~t~~W~~v 287 (647)
. .........++++|+.+.....+
T Consensus 444 ~----~~~~~~~~~i~l~d~~~g~~~~l 467 (1045)
T 1k32_A 444 G----ETDGYVMQAIHVYDMEGRKIFAA 467 (1045)
T ss_dssp S----TTCSCCEEEEEEEETTTTEEEEC
T ss_pred c----cccCCCCCeEEEEECCCCcEEEe
Confidence 0 00012345799999988775544
No 262
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=71.00 E-value=1.5e+02 Score=33.92 Aligned_cols=196 Identities=9% Similarity=0.032 Sum_probs=104.6
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCC----eEEEecCCCCCCCcceeEEEE--ECCEEEEEeCCcC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ----EWKVISSPNSPPPRSAHQAVS--WKNYLYIFGGEFT 145 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~----~W~~l~s~~~P~~R~~ha~v~--~~~~iyv~GG~~~ 145 (647)
.++.+.+. ++.||+.-.. .+.|+++++... ....+....+..| .++++ .++.||+.-..
T Consensus 427 ~gl~~d~~-~~~lY~sD~~---------~~~I~~~~l~g~~~~~~~~~vi~~~l~~P---~GLAvD~~~~~LY~tD~~-- 491 (791)
T 3m0c_C 427 VALDTEVA-SNRIYWSDLS---------QRMICSTQLDRAHGVSSYDTVISRDIQAP---DGLAVDWIHSNIYWTDSV-- 491 (791)
T ss_dssp EEEEEETT-TTEEEEEETT---------TTEEEEEEC--------CEEEECSSCSCC---CEEEEETTTTEEEEEETT--
T ss_pred EEEeeccc-CCeeEEeecc---------ceeEEEEeccCCCCCcceeEEEecCCCCc---ceeeeeecCCcEEEEecC--
Confidence 44444432 4677776541 135777777642 2233322111111 23333 36799998532
Q ss_pred CCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEE
Q 006384 146 SPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE 223 (647)
Q Consensus 146 ~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~ 223 (647)
.+.|+++++....-..+....+..|+ ++++. ++.||+.--. ....|+++++....-..
T Consensus 492 ---------~~~I~v~~ldG~~~~~l~~~~l~~P~---gIaVDp~~g~LYwtD~g--------~~~~I~~~~~dG~~~~~ 551 (791)
T 3m0c_C 492 ---------LGTVSVADTKGVKRKTLFRENGSKPR---AIVVDPVHGFMYWTDWG--------TPAKIKKGGLNGVDIYS 551 (791)
T ss_dssp ---------TTEEEEEETTSSSEEEEEECTTCCEE---EEEEETTTTEEEEEECS--------SSCEEEEEETTSCCEEE
T ss_pred ---------CCeEEEEeCCCCeEEEEEeCCCCCcc---eEEEecCCCCEEEecCC--------CCCeEEEEecCCCceEE
Confidence 35789999987766555443333333 34442 5789986411 12568888887654443
Q ss_pred eccCCCCCCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCe-EEEeecCCCCCCCceee
Q 006384 224 IKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE-WSKVKKIGMPPGPRAGF 300 (647)
Q Consensus 224 v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~-W~~v~~~g~~P~~R~~~ 300 (647)
+... .+..| .++++- .+.||+.-... +.|+++++.... ...+...+..+ ..+
T Consensus 552 lv~~---~l~~P---~GLavD~~~~~LYwaD~~~----------------~~I~~~d~dG~~~~~v~~~~~~l~---~P~ 606 (791)
T 3m0c_C 552 LVTE---NIQWP---NGITLDLLSGRLYWVDSKL----------------HSISSIDVNGGNRKTILEDEKRLA---HPF 606 (791)
T ss_dssp EECS---SCSCE---EEEEEETTTTEEEEEETTT----------------TEEEEEETTSCSCEEEEECTTTTS---SEE
T ss_pred EEeC---CCCCc---eEEEEecCCCeEEEEeCCC----------------CcEEEEecCCCceEEEecCCCccC---CCC
Confidence 3322 01111 233433 78999985432 348888886543 33333222222 345
Q ss_pred EEEEECCeEEEecceeccccCccccccccCCcEEEEECCCC
Q 006384 301 SMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (647)
Q Consensus 301 s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (647)
++++.+++||+.-.. .+.|+++|..+.
T Consensus 607 glav~~~~lYwtD~~--------------~~~I~~~dk~tG 633 (791)
T 3m0c_C 607 SLAVFEDKVFWTDII--------------NEAIFSANRLTG 633 (791)
T ss_dssp EEEEETTEEEEEETT--------------TTEEEEEETTTC
T ss_pred EEEEeCCEEEEEECC--------------CCEEEEEeCCCC
Confidence 777888999987532 466888886554
No 263
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=70.29 E-value=88 Score=30.92 Aligned_cols=62 Identities=13% Similarity=0.116 Sum_probs=32.3
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEE-ECCEEEEEecccCCCCceeeeCcEE
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLY 212 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~-~~~~lyv~GG~~~~~~~~~~~~dv~ 212 (647)
++.+++.|+.. ..+.+||+.+.+....-. ...... .+++. -++..++.||.+ ..+.
T Consensus 87 ~~~~l~s~s~D-----------~~v~lwd~~~~~~~~~~~--~h~~~v-~~v~~sp~~~~l~s~~~d---------~~i~ 143 (343)
T 2xzm_R 87 ENCFAISSSWD-----------KTLRLWDLRTGTTYKRFV--GHQSEV-YSVAFSPDNRQILSAGAE---------REIK 143 (343)
T ss_dssp STTEEEEEETT-----------SEEEEEETTSSCEEEEEE--CCCSCE-EEEEECSSTTEEEEEETT---------SCEE
T ss_pred CCCEEEEEcCC-----------CcEEEEECCCCcEEEEEc--CCCCcE-EEEEECCCCCEEEEEcCC---------CEEE
Confidence 35566666642 458889988776432211 111111 12222 255666677753 3577
Q ss_pred EEEcCC
Q 006384 213 VFDLDQ 218 (647)
Q Consensus 213 ~yD~~t 218 (647)
+||+..
T Consensus 144 ~wd~~~ 149 (343)
T 2xzm_R 144 LWNILG 149 (343)
T ss_dssp EEESSS
T ss_pred EEeccC
Confidence 777764
No 264
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=70.06 E-value=86 Score=30.70 Aligned_cols=143 Identities=14% Similarity=0.060 Sum_probs=71.3
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEE-ecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKV-ISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKD 157 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~-l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~d 157 (647)
++.+++.|+. + ..+.+||+.+.+-.. +... ......+.+ ++.+++.|+.. ..
T Consensus 76 dg~~l~s~s~--D-------~~v~~wd~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~s~s~D-----------~~ 130 (319)
T 3frx_A 76 DGAYALSASW--D-------KTLRLWDVATGETYQRFVGH-----KSDVMSVDIDKKASMIISGSRD-----------KT 130 (319)
T ss_dssp TSSEEEEEET--T-------SEEEEEETTTTEEEEEEECC-----SSCEEEEEECTTSCEEEEEETT-----------SC
T ss_pred CCCEEEEEeC--C-------CEEEEEECCCCCeeEEEccC-----CCcEEEEEEcCCCCEEEEEeCC-----------Ce
Confidence 5666666662 2 367888988875432 2211 111222333 45677777653 34
Q ss_pred EEEEECCCCcEEEcccCCCCCCcceeEEEEE-------CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCC
Q 006384 158 FWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-------KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGS 230 (647)
Q Consensus 158 v~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-------~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~ 230 (647)
+.+||+....-..+.. .... -..+... ++.+++.||.+ ..+.+||+.+.+-...-..
T Consensus 131 i~vwd~~~~~~~~~~~---h~~~-v~~~~~~~~~~~~~~~~~l~s~~~d---------~~i~~wd~~~~~~~~~~~~--- 194 (319)
T 3frx_A 131 IKVWTIKGQCLATLLG---HNDW-VSQVRVVPNEKADDDSVTIISAGND---------KMVKAWNLNQFQIEADFIG--- 194 (319)
T ss_dssp EEEEETTSCEEEEECC---CSSC-EEEEEECCC------CCEEEEEETT---------SCEEEEETTTTEEEEEECC---
T ss_pred EEEEECCCCeEEEEec---cCCc-EEEEEEccCCCCCCCccEEEEEeCC---------CEEEEEECCcchhheeecC---
Confidence 6778876554333321 1111 1112222 22355566642 3578888876543221111
Q ss_pred CCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCe
Q 006384 231 MWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (647)
Q Consensus 231 ~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (647)
....-.+++.. ++.+++.||.++. +.+||+.+.+
T Consensus 195 ---h~~~v~~~~~sp~g~~l~s~~~dg~----------------i~iwd~~~~~ 229 (319)
T 3frx_A 195 ---HNSNINTLTASPDGTLIASAGKDGE----------------IMLWNLAAKK 229 (319)
T ss_dssp ---CCSCEEEEEECTTSSEEEEEETTCE----------------EEEEETTTTE
T ss_pred ---CCCcEEEEEEcCCCCEEEEEeCCCe----------------EEEEECCCCc
Confidence 11111223333 6677888887654 7788887664
No 265
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=69.49 E-value=78 Score=30.03 Aligned_cols=159 Identities=7% Similarity=0.030 Sum_probs=85.7
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~ 149 (647)
+.+++.+. ++.||+.-.. .+.+++|++....-+.+..... ..-..+++. ++.||+......
T Consensus 82 ~~ia~d~~-~~~lyv~d~~---------~~~I~~~~~~g~~~~~~~~~~~---~~P~~i~vd~~~g~lyv~~~~~~---- 144 (267)
T 1npe_A 82 EGIALDHL-GRTIFWTDSQ---------LDRIEVAKMDGTQRRVLFDTGL---VNPRGIVTDPVRGNLYWTDWNRD---- 144 (267)
T ss_dssp EEEEEETT-TTEEEEEETT---------TTEEEEEETTSCSCEEEECSSC---SSEEEEEEETTTTEEEEEECCSS----
T ss_pred cEEEEEec-CCeEEEEECC---------CCEEEEEEcCCCCEEEEEECCC---CCccEEEEeeCCCEEEEEECCCC----
Confidence 45555542 3677776541 2467888887544333322111 112334444 688999853210
Q ss_pred ccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccC
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (647)
...++++++....-..+...+ ...-.++++- +++||+.-.. .+.|++||+....-..+...
T Consensus 145 -----~~~I~~~~~dg~~~~~~~~~~---~~~P~gia~d~~~~~lyv~d~~---------~~~I~~~~~~g~~~~~~~~~ 207 (267)
T 1npe_A 145 -----NPKIETSHMDGTNRRILAQDN---LGLPNGLTFDAFSSQLCWVDAG---------THRAECLNPAQPGRRKVLEG 207 (267)
T ss_dssp -----SCEEEEEETTSCCCEEEECTT---CSCEEEEEEETTTTEEEEEETT---------TTEEEEEETTEEEEEEEEEC
T ss_pred -----CcEEEEEecCCCCcEEEEECC---CCCCcEEEEcCCCCEEEEEECC---------CCEEEEEecCCCceEEEecC
Confidence 246888888654433332211 1222334443 5689986432 36789999876432222211
Q ss_pred CCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEe
Q 006384 228 FGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (647)
Q Consensus 228 ~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v 287 (647)
. ..| +++++.++.||+.-... +.++++|+.+.+-...
T Consensus 208 --~--~~P---~gi~~d~~~lyva~~~~----------------~~v~~~d~~~g~~~~~ 244 (267)
T 1npe_A 208 --L--QYP---FAVTSYGKNLYYTDWKT----------------NSVIAMDLAISKEMDT 244 (267)
T ss_dssp --C--CSE---EEEEEETTEEEEEETTT----------------TEEEEEETTTTEEEEE
T ss_pred --C--CCc---eEEEEeCCEEEEEECCC----------------CeEEEEeCCCCCceEE
Confidence 1 222 34556688999865433 2489999987765544
No 266
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=68.30 E-value=90 Score=31.78 Aligned_cols=148 Identities=11% Similarity=0.026 Sum_probs=76.0
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceee-CcEEEEECCCCe---EEEecCCCCCCCcceeE-EEEE--CCEEEEEeCCcC
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVY-GDLYRYDVEKQE---WKVISSPNSPPPRSAHQ-AVSW--KNYLYIFGGEFT 145 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~-ndl~~yd~~~~~---W~~l~s~~~P~~R~~ha-~v~~--~~~iyv~GG~~~ 145 (647)
-+++.+ ++.+||.+-. - +.++++++.... |-. ..++ +..+.+.. ++.. ++.|++..+ .
T Consensus 141 DvavD~--~GnaYVt~s~---------~~~~I~rV~pdG~~~~~~~~-~~~~-~~~~~G~nGIv~~pdg~~Liv~~~-~- 205 (334)
T 2p9w_A 141 QSAQDR--DGNSYVAFAL---------GMPAIARVSADGKTVSTFAW-ESGN-GGQRPGYSGITFDPHSNKLIAFGG-P- 205 (334)
T ss_dssp EEEECT--TSCEEEEEEE---------SSCEEEEECTTSCCEEEEEE-CCCC-SSSCCSCSEEEEETTTTEEEEESS-S-
T ss_pred eeEECC--CCCEEEeCCC---------CCCeEEEEeCCCCEEeeeee-cCCC-cccccCcceEEEeCCCCEEEEEcC-C-
Confidence 344444 5788886652 2 569999998653 532 2222 33455554 4444 456777654 1
Q ss_pred CCCCccccccCcEEEEECCCCcEEEcccC--CCC-CCcceeE--EEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc
Q 006384 146 SPNQERFHHYKDFWMLDLKTNQWEQLNLK--GCP-SPRSGHR--MVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (647)
Q Consensus 146 ~~~~~~~~~~~dv~~yD~~t~~W~~~~~~--~~P-~~R~~h~--~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (647)
..+++||+.+.....++.. +.. .....-. ...++++++++.-. .+.++++-...+
T Consensus 206 ----------g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~---------~~~~~~l~S~Dg- 265 (334)
T 2p9w_A 206 ----------RALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGAR---------APYAISFRSWDN- 265 (334)
T ss_dssp ----------SSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEE---------TTEEEEEECSST-
T ss_pred ----------CeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcC---------CCCEEEEECCCC-
Confidence 4689999885432112211 111 0011112 23368888665442 133444444444
Q ss_pred eEEeccCCCCCCCC---CceeeeEEE----eCCEEEEEecccCC
Q 006384 221 WQEIKPRFGSMWPS---PRSGFQFFV----YQDEVFLYGGYSKE 257 (647)
Q Consensus 221 W~~v~~~~~~~~P~---~R~~~s~~~----~~~~Iyv~GG~~~~ 257 (647)
|....... ..|. ++...+.++ .+++||++.++-..
T Consensus 266 W~sa~~~g--~~~~~~~~~g~tt~t~~~~~~~~~iYvv~~~f~~ 307 (334)
T 2p9w_A 266 WKSANIKK--TKRSELQNSGFTAVADYYQGSEQGLYAVSAFFDN 307 (334)
T ss_dssp TSEEEEEE--EECGGGGSSCEEEEEEEEETTEEEEEEEECCGGG
T ss_pred cceeEEee--eecCccccCceeEEEEeccccCCeEEEEeeecCC
Confidence 87765542 1222 233333334 57899999876543
No 267
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=68.24 E-value=97 Score=30.60 Aligned_cols=61 Identities=11% Similarity=0.127 Sum_probs=32.0
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEE-EecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKD 157 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~-~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~d 157 (647)
++.+++.|+. + ..+..||+.+.+.. .+... ......+.+ ++..++.||.. ..
T Consensus 87 ~~~~l~s~s~--D-------~~v~lwd~~~~~~~~~~~~h-----~~~v~~v~~sp~~~~l~s~~~d-----------~~ 141 (343)
T 2xzm_R 87 ENCFAISSSW--D-------KTLRLWDLRTGTTYKRFVGH-----QSEVYSVAFSPDNRQILSAGAE-----------RE 141 (343)
T ss_dssp STTEEEEEET--T-------SEEEEEETTSSCEEEEEECC-----CSCEEEEEECSSTTEEEEEETT-----------SC
T ss_pred CCCEEEEEcC--C-------CcEEEEECCCCcEEEEEcCC-----CCcEEEEEECCCCCEEEEEcCC-----------CE
Confidence 4556666662 2 36788898876543 22211 111122333 45566666643 35
Q ss_pred EEEEECCCC
Q 006384 158 FWMLDLKTN 166 (647)
Q Consensus 158 v~~yD~~t~ 166 (647)
+.+||+...
T Consensus 142 i~~wd~~~~ 150 (343)
T 2xzm_R 142 IKLWNILGE 150 (343)
T ss_dssp EEEEESSSC
T ss_pred EEEEeccCC
Confidence 777887643
No 268
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=67.36 E-value=41 Score=32.17 Aligned_cols=101 Identities=16% Similarity=0.225 Sum_probs=58.4
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCC----CeEE----EecC--CCCCCC--c-ceeEEEEE--CCEEEEEeCCcC
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEK----QEWK----VISS--PNSPPP--R-SAHQAVSW--KNYLYIFGGEFT 145 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~----~~W~----~l~s--~~~P~~--R-~~ha~v~~--~~~iyv~GG~~~ 145 (647)
++++|+|=| +.+|+||..+ .... .+.. +.+|.. . .--++... ++++|+|-|
T Consensus 70 ~g~~~fFkg-----------~~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~IDAA~~~~~~gk~yfFkG--- 135 (225)
T 3oyo_A 70 ASEAYVFSG-----------NHSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSAFRSTKGKEVYLFKG--- 135 (225)
T ss_dssp TTEEEEEET-----------TEEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCCEEEECSSTTEEEEEET---
T ss_pred CCeEEEEcC-----------CEEEEEecccccCCCceecCchhhhhcCCCCCCcccccccceEEEECCCCcEEEEeC---
Confidence 699999998 3678887632 2222 1111 112221 0 11223232 689999988
Q ss_pred CCCCccccccCcEEEEECCCCcEEEc----ccCCCCC------CcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEE
Q 006384 146 SPNQERFHHYKDFWMLDLKTNQWEQL----NLKGCPS------PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYV 213 (647)
Q Consensus 146 ~~~~~~~~~~~dv~~yD~~t~~W~~~----~~~~~P~------~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~ 213 (647)
+.+|+||..+++...- .. +.|. +..-.++..+ ++++|+|-| +..|+
T Consensus 136 ----------~~yw~~d~~~~~~~~gPk~I~~-~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG-----------~~ywr 193 (225)
T 3oyo_A 136 ----------NKYVRIAYDSKQLVGNIRNIGD-GFPVLNGTEFESGIDACFASHKEPEAYLFKG-----------QNYVR 193 (225)
T ss_dssp ----------TEEEEEETTTTEEEEEEEEHHH-HCGGGTTSTTTTCCSEEEECSSTTEEEEEET-----------TEEEE
T ss_pred ----------CeEEEEECCCCeecCCCcchhh-cCCCcccccCCCCcCEEEEeCCCCEEEEEEC-----------CEEEE
Confidence 5689999877665431 11 1121 2333345554 789999988 35788
Q ss_pred EEcC
Q 006384 214 FDLD 217 (647)
Q Consensus 214 yD~~ 217 (647)
||..
T Consensus 194 ~d~~ 197 (225)
T 3oyo_A 194 IDFT 197 (225)
T ss_dssp EECC
T ss_pred EeCC
Confidence 9887
No 269
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A
Probab=66.74 E-value=4.3 Score=39.29 Aligned_cols=61 Identities=13% Similarity=0.301 Sum_probs=37.9
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEE-----EcccCCCCCC------cceeEEEEE--CCEEEEEecccC
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWE-----QLNLKGCPSP------RSGHRMVLY--KHKIIVFGGFYD 200 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~-----~~~~~~~P~~------R~~h~~~~~--~~~lyv~GG~~~ 200 (647)
++++|+|-| +.+|+||..+++-. .+. .+.|.. ..-.+++.+ ++++|+|-|
T Consensus 129 ~~k~yfFkG-------------~~yw~~d~~~~~~~~gyPk~i~-~g~p~~~~~g~p~~iDAA~~~~~~g~~YfFkg--- 191 (227)
T 3lp9_A 129 GKEVYLFKG-------------DQYARIDYGSNSMVNKEIKSIS-SGYPCFRNTIFESGADAAFASHKTNEVYFFKD--- 191 (227)
T ss_dssp TTEEEEEET-------------TEEEEEETTTTEESSSSCEEHH-HHCGGGTTSGGGGCCSEEEECSSTTEEEEEET---
T ss_pred CCEEEEEEC-------------CEEEEEeCCCccccCCCCeEHH-HCCCCccccccCCCccEEEEcCCCceEEEEEC---
Confidence 589999988 56899998765321 111 112321 222344443 589999987
Q ss_pred CCCceeeeCcEEEEEcCCC
Q 006384 201 TLREVRYYNDLYVFDLDQF 219 (647)
Q Consensus 201 ~~~~~~~~~dv~~yD~~t~ 219 (647)
+..|+||..+.
T Consensus 192 --------~~Ywr~d~~~~ 202 (227)
T 3lp9_A 192 --------DHYARVKVTPX 202 (227)
T ss_dssp --------TEEEEEECCSS
T ss_pred --------CEEEEEECCcc
Confidence 35788987765
No 270
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=65.30 E-value=1.7e+02 Score=32.76 Aligned_cols=81 Identities=15% Similarity=0.179 Sum_probs=41.7
Q ss_pred EEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCcc
Q 006384 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQER 151 (647)
Q Consensus 74 ~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~ 151 (647)
..+.| +++.++|+......-+.....++|.||+.+++...+... +. . ...+.+ +++.++|+-
T Consensus 67 ~~~Sp--dg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~--~~-~--~~~~~~SPdG~~la~~~--------- 130 (740)
T 4a5s_A 67 YSISP--DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERI--PN-N--TQWVTWSPVGHKLAYVW--------- 130 (740)
T ss_dssp EEECT--TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC--CT-T--EEEEEECSSTTCEEEEE---------
T ss_pred eEECC--CCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccC--CC-c--ceeeEECCCCCEEEEEE---------
Confidence 34455 555555555321111122446899999999987665432 11 1 122233 333334431
Q ss_pred ccccCcEEEEECCCCcEEEccc
Q 006384 152 FHHYKDFWMLDLKTNQWEQLNL 173 (647)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~ 173 (647)
-+++|++|..++.-.++..
T Consensus 131 ---~~~i~~~~~~~~~~~~lt~ 149 (740)
T 4a5s_A 131 ---NNDIYVKIEPNLPSYRITW 149 (740)
T ss_dssp ---TTEEEEESSTTSCCEECCS
T ss_pred ---CCeEEEEECCCCceEEEcC
Confidence 1457777777666555544
No 271
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=64.94 E-value=1.1e+02 Score=29.95 Aligned_cols=53 Identities=17% Similarity=0.155 Sum_probs=28.2
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcceeEEEE-ECCEEEEEecccCCCCceeeeCcEEEEEcCCCc
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~-~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (647)
..+.+||+.+..-...-. + ...... +++. -++++++.||.+ ..+.+||+.+.+
T Consensus 176 ~~i~~wd~~~~~~~~~~~-~-h~~~v~-~~~~sp~g~~l~s~~~d---------g~i~iwd~~~~~ 229 (319)
T 3frx_A 176 KMVKAWNLNQFQIEADFI-G-HNSNIN-TLTASPDGTLIASAGKD---------GEIMLWNLAAKK 229 (319)
T ss_dssp SCEEEEETTTTEEEEEEC-C-CCSCEE-EEEECTTSSEEEEEETT---------CEEEEEETTTTE
T ss_pred CEEEEEECCcchhheeec-C-CCCcEE-EEEEcCCCCEEEEEeCC---------CeEEEEECCCCc
Confidence 357788887665332211 1 111111 2222 256777777753 358888887764
No 272
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=64.73 E-value=1.5e+02 Score=31.55 Aligned_cols=73 Identities=16% Similarity=0.078 Sum_probs=38.0
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCC----eEEEecCC-CC--C-CCcceeEEEEE-CCEEEEEeCCcCCCCCcc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ----EWKVISSP-NS--P-PPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~----~W~~l~s~-~~--P-~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~ 151 (647)
..+|||-|.. .+.++++|..++ +-.+...+ .. + ....-|.+... ++ |||..--.....
T Consensus 95 r~~l~v~~l~---------s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~--- 161 (462)
T 2ece_A 95 RRFLIVPGLR---------SSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGE--- 161 (462)
T ss_dssp SCEEEEEBTT---------TCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSC---
T ss_pred CCEEEEccCC---------CCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCC---
Confidence 4567766662 368999998866 44332210 00 0 01123444444 45 777432111111
Q ss_pred ccccCcEEEEECCCCcE
Q 006384 152 FHHYKDFWMLDLKTNQW 168 (647)
Q Consensus 152 ~~~~~dv~~yD~~t~~W 168 (647)
.-..+.++|+.+.+-
T Consensus 162 --~~g~v~vlD~~T~~v 176 (462)
T 2ece_A 162 --GPGGILMLDHYSFEP 176 (462)
T ss_dssp --SCCEEEEECTTTCCE
T ss_pred --CCCeEEEEECCCCeE
Confidence 136799999997763
No 273
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=64.61 E-value=1.5e+02 Score=31.41 Aligned_cols=174 Identities=6% Similarity=-0.001 Sum_probs=79.7
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCC
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~ 179 (647)
.+..+|........+.... .....+.+ ++..++.|+.. ..+.+||.....-..+.. +..
T Consensus 285 ~i~~w~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~l~t~~~d-----------~~i~~w~~~~~~~~~~~~---~~~ 345 (577)
T 2ymu_A 285 TVKLWNRNGQLLQTLTGHS-----SSVWGVAFSPDGQTIASASDD-----------KTVKLWNRNGQHLQTLTG---HSS 345 (577)
T ss_dssp CEEEEETTSCEEEEECCCS-----SCEEEEEECTTSSEEEEEETT-----------SCEEEEETTSCEEEEECC---CSS
T ss_pred EEEEEeCCCcEEEEEecCC-----CCeEEEEECCCCCEEEEEeCC-----------CeEEEEeCCCCeeEEEeC---CCC
Confidence 4667776655544443211 11122223 45566666532 346677776654443322 111
Q ss_pred cceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCC
Q 006384 180 RSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (647)
Q Consensus 180 R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~ 257 (647)
.. .+++.. +++.++.|+.. ..+.+||.....-..+... ..+ -.+++.. ++.+++.|+.++.
T Consensus 346 ~v-~~~~~s~~g~~l~~~~~d---------g~v~~~~~~~~~~~~~~~~-----~~~--v~~~~~s~dg~~l~~~~~d~~ 408 (577)
T 2ymu_A 346 SV-WGVAFSPDGQTIASASDD---------KTVKLWNRNGQLLQTLTGH-----SSS--VRGVAFSPDGQTIASASDDKT 408 (577)
T ss_dssp CE-EEEEECTTSSEEEEEETT---------SEEEEEETTCCEEEEEECC-----SSC--EEEEEECTTSSCEEEEETTSE
T ss_pred CE-EEEEECCCCCEEEEEeCC---------CEEEEEcCCCCEEEEecCC-----CCC--eEEEEECCCCCEEEEEeCCCE
Confidence 11 122222 55666666642 2466777654433333221 111 1122222 5666777766543
Q ss_pred CCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEecceeccccCccccccccCCcEEEE
Q 006384 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGF 336 (647)
Q Consensus 258 ~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~y 336 (647)
+.+||.....-..+.. .... -.++++. ++++++.|+.+ ..|.+|
T Consensus 409 ----------------v~~~~~~~~~~~~~~~----~~~~-v~~~~~s~d~~~l~~~~~d--------------~~v~~w 453 (577)
T 2ymu_A 409 ----------------VKLWNRNGQLLQTLTG----HSSS-VWGVAFSPDDQTIASASDD--------------KTVKLW 453 (577)
T ss_dssp ----------------EEEECTTCCEEEEEEC----CSSC-EEEEEECTTSSEEEEEETT--------------SEEEEE
T ss_pred ----------------EEEEeCCCCEEEEecC----CCCC-eEEEEECCCCCEEEEEcCC--------------CEEEEE
Confidence 6677755443333321 1111 1223332 56666666542 347778
Q ss_pred ECCCCcEEEe
Q 006384 337 QLDNHRWYPL 346 (647)
Q Consensus 337 d~~t~~W~~l 346 (647)
|+....-..+
T Consensus 454 ~~~~~~~~~~ 463 (577)
T 2ymu_A 454 NRNGQLLQTL 463 (577)
T ss_dssp ETTSCEEEEE
T ss_pred ECCCCEEEEE
Confidence 8765444333
No 274
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=62.83 E-value=47 Score=37.47 Aligned_cols=200 Identities=9% Similarity=0.054 Sum_probs=99.8
Q ss_pred cceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCC----CeEEEecCCCCCCCcceeEEEE--ECCEEEEEeCC
Q 006384 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEK----QEWKVISSPNSPPPRSAHQAVS--WKNYLYIFGGE 143 (647)
Q Consensus 70 ~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~----~~W~~l~s~~~P~~R~~ha~v~--~~~~iyv~GG~ 143 (647)
..+++++.+. ++.||+.--. .+.|+++++.. ..-..+..... ..-..+++ .++.||+.-..
T Consensus 407 ~p~gla~d~~-~~~Ly~sD~~---------~~~I~~~~~~g~~~~~~~~~~i~~~~---~~P~glavD~~~g~LY~tD~~ 473 (699)
T 1n7d_A 407 NVVALDTEVA-SNRIYWSDLS---------QRMICSTQLDRAHGVSSYDTVISRDI---QAPDGLAVDWIHSNIYWTDSV 473 (699)
T ss_dssp TCCCCEEETT-TTEEEECCTT---------TTSBEEEESCCCCC-CCCCCBCCSCC-----CCCEECCCSSSBCEECCTT
T ss_pred ceEEEccccc-cCeEEEEecC---------CCeEEEEecCCCCCCcceEEEEeCCC---CCcceEEEEeeCCcEEEEecc
Confidence 3345555543 4677775431 23678888875 11111111111 11122333 36788886321
Q ss_pred cCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEE--ECCEEEEEecccCCCCceeeeCcEEEEEcCCCce
Q 006384 144 FTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVL--YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (647)
Q Consensus 144 ~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~--~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W 221 (647)
.+.|+++++....-..+...++..|+ .+++ .++.||+.--. ....|+++++....-
T Consensus 474 -----------~~~I~v~d~dg~~~~~l~~~~~~~P~---giavDp~~g~ly~td~~--------~~~~I~~~~~dG~~~ 531 (699)
T 1n7d_A 474 -----------LGTVSVADTKGVKRKTLFREQGSKPR---AIVVDPVHGFMYWTDWG--------TPAKIKKGGLNGVDI 531 (699)
T ss_dssp -----------TSCEEEEBSSSCCEEEECCCSSCCCC---CEECCSSSSCCEECCCS--------SSCCEEBCCSSSCCC
T ss_pred -----------CCeEEEEecCCCceEEEEeCCCCCcc---eEEEccCCCcEEEcccC--------CCCeEEEEeCCCCCe
Confidence 25688999887655554332222232 2333 25677765310 024677877765433
Q ss_pred EEeccCCCCCCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCcee
Q 006384 222 QEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAG 299 (647)
Q Consensus 222 ~~v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~ 299 (647)
..+... ....| .++++. ++.||+.-... ..|+++++....-..+.... ......
T Consensus 532 ~~l~~~-~l~~P-----nGlavd~~~~~LY~aD~~~----------------~~I~~~d~dG~~~~~~~~~~--~~~~~P 587 (699)
T 1n7d_A 532 YSLVTE-NIQWP-----NGITLDLLSGRLYWVDSKL----------------HSISSIDVNGGNRKTILEDE--KRLAHP 587 (699)
T ss_dssp CEESCS-SCSSC-----CCEEECTTTCCEEEEETTT----------------TEEEEECSSSSCCEEECCCS--SSCSSC
T ss_pred eEEEeC-CCCCc-----cEEEEeccCCEEEEEecCC----------------CeEEEEccCCCceEEEEecC--CcCCCc
Confidence 333211 00112 133443 67888876432 24788888654333332210 111223
Q ss_pred eEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 300 FSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 300 ~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
+++++..+.||+.-.. .+.|+++|+.+.+
T Consensus 588 ~glavd~~~lywtd~~--------------~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 588 FSLAVFEDKVFWTDII--------------NEAIFSANRLTGS 616 (699)
T ss_dssp CCCEEETTEEEEECST--------------TTCEEEEETTTEE
T ss_pred eEeEEECCEEEEEeCC--------------CCeEEEEEccCCC
Confidence 4566778888887632 3569999986654
No 275
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=61.29 E-value=2.5e+02 Score=32.87 Aligned_cols=112 Identities=12% Similarity=0.108 Sum_probs=60.3
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCC-
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS- 178 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~- 178 (647)
++|.+++...+-+.+.... . ....+.+ +++.++|........ -...+|++|+.+..-..+.......
T Consensus 34 ~l~~~~~~gg~~~~lt~~~----~-~v~~~~~SPDG~~la~~s~~~~~~-----~~~~i~~~d~~~g~~~~lt~~~~~~~ 103 (1045)
T 1k32_A 34 DLWEHDLKSGSTRKIVSNL----G-VINNARFFPDGRKIAIRVMRGSSL-----NTADLYFYNGENGEIKRITYFSGKST 103 (1045)
T ss_dssp EEEEEETTTCCEEEEECSS----S-EEEEEEECTTSSEEEEEEEESTTC-----CEEEEEEEETTTTEEEECCCCCEEEE
T ss_pred cEEEEECCCCcEEEeeeCC----C-cccCeEECCCCCEEEEEEeeccCC-----CCCeEEEEECCCCCeEEcccCCCccc
Confidence 7999999988877776421 1 2223333 555555553321000 1257999999988766554311000
Q ss_pred Ccce-eEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEecc
Q 006384 179 PRSG-HRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (647)
Q Consensus 179 ~R~~-h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~ 226 (647)
+|.. ...+.+ +++|++.+..... ......+|.+|+.+.....+..
T Consensus 104 ~~~~~~~~~~~SpDg~ll~~~~~~~~---~~~~~~l~~~~~~~g~~~~l~~ 151 (1045)
T 1k32_A 104 GRRMFTDVAGFDPDGNLIISTDAMQP---FSSMTCLYRVENDGINFVPLNL 151 (1045)
T ss_dssp TTEECSEEEEECTTCCEEEEECTTSS---STTCCEEEEEEGGGTEEEECCS
T ss_pred ccccccccccCCCCCEEEEEECCcCC---CcccceEEEEECCCCCeEEecC
Confidence 1111 123333 5666555543211 1123579999998887666554
No 276
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=61.23 E-value=1.9e+02 Score=31.43 Aligned_cols=180 Identities=7% Similarity=0.039 Sum_probs=89.4
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCC
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~ 179 (647)
.+..||..+.+....-. .....-..+.+ ++.+++.||.. ..+.+||+.+......-... ...
T Consensus 171 ~v~lwd~~~~~~~~~l~----~H~~~V~~v~fspdg~~las~s~D-----------~~i~lwd~~~g~~~~~~~~~-~~~ 234 (611)
T 1nr0_A 171 TVAIFEGPPFKFKSTFG----EHTKFVHSVRYNPDGSLFASTGGD-----------GTIVLYNGVDGTKTGVFEDD-SLK 234 (611)
T ss_dssp CEEEEETTTBEEEEEEC----CCSSCEEEEEECTTSSEEEEEETT-----------SCEEEEETTTCCEEEECBCT-TSS
T ss_pred eEEEEECCCCeEeeeec----cccCceEEEEECCCCCEEEEEECC-----------CcEEEEECCCCcEeeeeccc-ccc
Confidence 56777876654432211 11112223333 46677777753 35788898877654322100 000
Q ss_pred ccee----EEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEec
Q 006384 180 RSGH----RMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGG 253 (647)
Q Consensus 180 R~~h----~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG 253 (647)
..+| .++.+ ++++++.||.+ ..+.++|+.+.+....-... .........+...+..++.++
T Consensus 235 ~~~h~~~V~~v~~spdg~~l~s~s~D---------~~v~lWd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~s~s 301 (611)
T 1nr0_A 235 NVAHSGSVFGLTWSPDGTKIASASAD---------KTIKIWNVATLKVEKTIPVG----TRIEDQQLGIIWTKQALVSIS 301 (611)
T ss_dssp SCSSSSCEEEEEECTTSSEEEEEETT---------SEEEEEETTTTEEEEEEECC----SSGGGCEEEEEECSSCEEEEE
T ss_pred ccccCCCEEEEEECCCCCEEEEEeCC---------CeEEEEeCCCCceeeeecCC----CCccceeEEEEEcCCEEEEEe
Confidence 1122 12233 56677777753 46888999887665432221 111111222333566666666
Q ss_pred ccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEecceeccccCccccccccCCc
Q 006384 254 YSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNE 332 (647)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~nd 332 (647)
.++. +..+++.+..-..... +. ...-.++++. +++.++.|+.. ..
T Consensus 302 ~d~~----------------i~~~~~~~~~~~~~~~-gh---~~~v~~l~~spdg~~l~s~s~D--------------~~ 347 (611)
T 1nr0_A 302 ANGF----------------INFVNPELGSIDQVRY-GH---NKAITALSSSADGKTLFSADAE--------------GH 347 (611)
T ss_dssp TTCC----------------EEEEETTTTEEEEEEC-CC---SSCEEEEEECTTSSEEEEEETT--------------SC
T ss_pred CCCc----------------EEEEeCCCCCcceEEc-CC---CCCEEEEEEeCCCCEEEEEeCC--------------Cc
Confidence 5544 6677777665322211 11 1111223332 56677776643 34
Q ss_pred EEEEECCCCcEE
Q 006384 333 LYGFQLDNHRWY 344 (647)
Q Consensus 333 l~~yd~~t~~W~ 344 (647)
|.+||+.+..-.
T Consensus 348 v~~Wd~~~~~~~ 359 (611)
T 1nr0_A 348 INSWDISTGISN 359 (611)
T ss_dssp EEEEETTTCCEE
T ss_pred EEEEECCCCcee
Confidence 788888776543
No 277
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=60.06 E-value=63 Score=35.51 Aligned_cols=124 Identities=18% Similarity=0.206 Sum_probs=65.7
Q ss_pred EEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc--eEEeccCCCCCCCC-CceeeeEEEeCCEEEEEecccCCCCCc
Q 006384 185 MVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPS-PRSGFQFFVYQDEVFLYGGYSKEVSTD 261 (647)
Q Consensus 185 ~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~-~R~~~s~~~~~~~Iyv~GG~~~~~~~~ 261 (647)
-++.++.||+.... +.|+.||..+.+ |+.-...+....+. .....+.++.++.||+.. .+
T Consensus 64 P~v~~g~vyv~~~~----------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t-~d------ 126 (582)
T 1flg_A 64 AIVSDGVIYVTASY----------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGT-LD------ 126 (582)
T ss_dssp CEEETTEEEEEETT----------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEE-TT------
T ss_pred cEEECCEEEEEcCC----------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEe-CC------
Confidence 45679999997653 238999998754 88754432110000 001123456788888743 22
Q ss_pred ccCCCCCceeeeEEEEeCCCC--eEEEeecCCCCCCCceeeEEEEECC------eEEEecceeccccCccccccccCCcE
Q 006384 262 KNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPPGPRAGFSMCVHKK------RALLFGGVVDMEMKGDVIMSLFLNEL 333 (647)
Q Consensus 262 ~~~~~~~~~~~dv~~yd~~t~--~W~~v~~~g~~P~~R~~~s~~~~~~------~iyifGG~~~~~~~~~~~~~~~~ndl 333 (647)
..++.+|..+. .|+.-.... ........+.++.++ .|| +|..... ...-..|
T Consensus 127 ----------g~l~AlD~~TG~~~W~~~~~~~-~~~~~~~~sP~v~~~~~~G~~~v~-vg~~~~e--------~~~~g~v 186 (582)
T 1flg_A 127 ----------ASVVALNKNTGKVVWKKKFADH-GAGYTMTGAPTIVKDGKTGKVLLI-HGSSGDE--------FGVVGRL 186 (582)
T ss_dssp ----------TEEEEEESSSCCEEEEEECSCG-GGTCBCCSCCEEEECTTTCCEEEE-ECCBCGG--------GCCBCEE
T ss_pred ----------CEEEEEECCCCCEEeeecCCCC-CcCcccccCCEEeCCCcCCcEEEE-Eeccccc--------cCCCCEE
Confidence 23889998655 688653210 000011122344555 444 4432110 0123569
Q ss_pred EEEECCCC--cEEE
Q 006384 334 YGFQLDNH--RWYP 345 (647)
Q Consensus 334 ~~yd~~t~--~W~~ 345 (647)
+.||+.+. .|+.
T Consensus 187 ~alD~~tG~~~W~~ 200 (582)
T 1flg_A 187 FARDPDTGEEIWMR 200 (582)
T ss_dssp EEECTTTCCEEEEE
T ss_pred EEEECCCCCEEeec
Confidence 99999876 4853
No 278
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=59.94 E-value=1.2e+02 Score=28.77 Aligned_cols=59 Identities=22% Similarity=0.504 Sum_probs=35.5
Q ss_pred ECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcE--EEcccC--CCCCCcceeEEEEECCEEEEEecccCCCCceeee
Q 006384 133 WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQW--EQLNLK--GCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYY 208 (647)
Q Consensus 133 ~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W--~~~~~~--~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~ 208 (647)
.++.+|+|=| +.+|+|+.....+ ..+... ++|. .--++..+++++|+|-|
T Consensus 27 ~~g~~yfFkg-------------~~~Wr~~~~~~~~~p~~Is~~wpgLP~--~IDAA~~~~~~~yfFkG----------- 80 (219)
T 1hxn_A 27 NHGATYVFSG-------------SHYWRLDTNRDGWHSWPIAHQWPQGPS--TVDAAFSWEDKLYLIQD----------- 80 (219)
T ss_dssp TTSCEEEEET-------------TEEEESSSSSCTTCCEEGGGTCTTSCS--SCSEEEEETTEEEEEET-----------
T ss_pred CCCcEEEEeC-------------CEEEEEcCCCCCCCceEhhhhccCCCC--CccEEEEECCcEEEecC-----------
Confidence 3788999987 4567776543222 223221 3342 22244456899999977
Q ss_pred CcEEEEEcC
Q 006384 209 NDLYVFDLD 217 (647)
Q Consensus 209 ~dv~~yD~~ 217 (647)
+.+|+|+..
T Consensus 81 ~~yw~~~~~ 89 (219)
T 1hxn_A 81 TKVYVFLTK 89 (219)
T ss_dssp TEEEEEECS
T ss_pred CEEEEEeCC
Confidence 357888864
No 279
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=58.81 E-value=1.7e+02 Score=30.17 Aligned_cols=150 Identities=9% Similarity=0.070 Sum_probs=81.8
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcE
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv 211 (647)
++.||+.... -+.+.+||+.++.-..+... ....+ .++. ++.||+..... ...+
T Consensus 141 ~g~lyv~d~~-----------~~~I~~id~~~g~~~~~~~~----~~~~~-ia~~~~g~~l~~~d~~~--------~~~I 196 (409)
T 3hrp_A 141 NNTVLAYQRD-----------DPRVRLISVDDNKVTTVHPG----FKGGK-PAVTKDKQRVYSIGWEG--------THTV 196 (409)
T ss_dssp TTEEEEEETT-----------TTEEEEEETTTTEEEEEEET----CCBCB-CEECTTSSEEEEEBSST--------TCEE
T ss_pred CCCEEEEecC-----------CCcEEEEECCCCEEEEeecc----CCCCc-eeEecCCCcEEEEecCC--------CceE
Confidence 5789998652 25689999998876666442 12223 2222 34666654321 1268
Q ss_pred EEEEcCCCc-eEEeccCCCCCCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEee
Q 006384 212 YVFDLDQFK-WQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (647)
Q Consensus 212 ~~yD~~t~~-W~~v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~ 288 (647)
+.|++.+.. ...+..... +....-+++++. ++.||+... . ..+++||+.+.....+.
T Consensus 197 ~~~d~~~~~~~~~~g~~~~---~~~~~p~~iav~p~~g~lyv~d~-~----------------~~I~~~d~~~~~~~~~~ 256 (409)
T 3hrp_A 197 YVYMKASGWAPTRIGQLGS---TFSGKIGAVALDETEEWLYFVDS-N----------------KNFGRFNVKTQEVTLIK 256 (409)
T ss_dssp EEEEGGGTTCEEEEEECCT---TSCSCCCBCEECTTSSEEEEECT-T----------------CEEEEEETTTCCEEEEE
T ss_pred EEEEcCCCceeEEeeeccc---hhcCCcEEEEEeCCCCeEEEEEC-C----------------CcEEEEECCCCCEEEEe
Confidence 999987543 233311100 011222344444 578888322 1 24899999877665553
Q ss_pred cCCCCCCCcee-e-EEEEE--CCeEEEecceeccccCccccccccCCcEEEEECCCC
Q 006384 289 KIGMPPGPRAG-F-SMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (647)
Q Consensus 289 ~~g~~P~~R~~-~-s~~~~--~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (647)
..+........ + .+++. ++.||+.... .+.|++|++...
T Consensus 257 ~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~--------------~~~I~~~~~~g~ 299 (409)
T 3hrp_A 257 QLELSGSLGTNPGPYLIYYFVDSNFYMSDQN--------------LSSVYKITPDGE 299 (409)
T ss_dssp ECCCCSCCCCSSCCEEEEETTTTEEEEEETT--------------TTEEEEECTTCC
T ss_pred cccccCCCCCCccccEEEeCCCCEEEEEeCC--------------CCEEEEEecCCC
Confidence 22211111222 2 55665 5788887432 356999998765
No 280
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=58.17 E-value=3.3 Score=42.87 Aligned_cols=52 Identities=10% Similarity=0.073 Sum_probs=24.6
Q ss_pred CcEEEEECCCCc--EEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCC--ceE
Q 006384 156 KDFWMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--KWQ 222 (647)
Q Consensus 156 ~dv~~yD~~t~~--W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~--~W~ 222 (647)
..++.||..+++ |+.-. + + . ....++.++.+|+.++.. ..++.||..+. .|.
T Consensus 19 g~v~a~d~~tG~~~W~~~~--~-~-~--~s~p~~~~g~~~v~~s~d---------g~l~a~d~~tG~~~w~ 74 (369)
T 2hz6_A 19 GSLHAVSKRTGSIKWTLKE--D-P-V--LQVPTHVEEPAFLPDPND---------GSLYTLGSKNNEGLTK 74 (369)
T ss_dssp SEEEEEETTTCCEEEEEEC--C-C-S--CCCC-----CCEEECTTT---------CCEEEC-----CCSEE
T ss_pred CEEEEEECCCCCEEEEecC--C-C-c--eecceEcCCCEEEEeCCC---------CEEEEEECCCCceeee
Confidence 458899988774 76543 1 1 1 112234466777776432 45888998654 455
No 281
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=58.07 E-value=2.3e+02 Score=31.91 Aligned_cols=98 Identities=11% Similarity=0.158 Sum_probs=53.6
Q ss_pred cCcEEEEECCCC--cE--EEcccCCCCCCcceeEEE-EECCEEEEEecccCCCCceeeeCcEEEEEcCC-CceEE-eccC
Q 006384 155 YKDFWMLDLKTN--QW--EQLNLKGCPSPRSGHRMV-LYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ-FKWQE-IKPR 227 (647)
Q Consensus 155 ~~dv~~yD~~t~--~W--~~~~~~~~P~~R~~h~~~-~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t-~~W~~-v~~~ 227 (647)
.+++|++|+.+. .+ ..+.... ..+. +... ..++.||+..-.... ....|+.+|+.+ ..|+. +-+.
T Consensus 294 ~~~l~~~d~~~~~~~~~~~~l~~~~-~~~~--~s~~~~~g~~l~~~t~~~~a-----~~~~L~~~d~~~~~~~~~~li~~ 365 (751)
T 2xe4_A 294 TAEVHLLDLRKGNAHNTLEIVRPRE-KGVR--YDVQMHGTSHLVILTNEGGA-----VNHKLLIAPRGQPSDWSHVLVDH 365 (751)
T ss_dssp CEEEEEEESSSCTTCCCEEESSCCC-TTCC--EEEEEETTTEEEEEECTTTC-----TTCEEEEEETTSTTCCCCEEECC
T ss_pred CceEEEEECCCCCCCceeEEeecCC-CCce--EEEeeeeCCEEEEEeCCCCC-----CCcEEEEEcCCCcccceeeEECC
Confidence 357888888765 45 5554311 1111 1122 237788888654311 134788999876 67876 4332
Q ss_pred CCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeC
Q 006384 228 FGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDP 279 (647)
Q Consensus 228 ~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~ 279 (647)
.....-..+...++.||+..-... ...++++++
T Consensus 366 -----~~~~~l~~~~~~~~~lv~~~~~~g--------------~~~l~~~dl 398 (751)
T 2xe4_A 366 -----SEDVFMESIAVRSNYLVVAGRRAG--------------LTRIWTMMA 398 (751)
T ss_dssp -----CSSEEEEEEEECSSEEEEEEEETT--------------EEEEEEEEC
T ss_pred -----CCCcEEEEEEEECCEEEEEEEeCC--------------EEEEEEEec
Confidence 112222334445777777664332 345888886
No 282
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=55.68 E-value=2.6e+02 Score=31.41 Aligned_cols=98 Identities=9% Similarity=0.083 Sum_probs=54.9
Q ss_pred eCcEEEEECCCC--eE--EEecCCCCCCCcceeEEE-EECCEEEEEeCCcCCCCCccccccCcEEEEECCC-CcEEE-cc
Q 006384 100 YGDLYRYDVEKQ--EW--KVISSPNSPPPRSAHQAV-SWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT-NQWEQ-LN 172 (647)
Q Consensus 100 ~ndl~~yd~~~~--~W--~~l~s~~~P~~R~~ha~v-~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t-~~W~~-~~ 172 (647)
.+++|.+|+.+. .+ +.+.... ..+ .++.. ..++.||+..-.... ....++++|+.+ ..|.. +-
T Consensus 294 ~~~l~~~d~~~~~~~~~~~~l~~~~-~~~--~~s~~~~~g~~l~~~t~~~~a-------~~~~L~~~d~~~~~~~~~~li 363 (751)
T 2xe4_A 294 TAEVHLLDLRKGNAHNTLEIVRPRE-KGV--RYDVQMHGTSHLVILTNEGGA-------VNHKLLIAPRGQPSDWSHVLV 363 (751)
T ss_dssp CEEEEEEESSSCTTCCCEEESSCCC-TTC--CEEEEEETTTEEEEEECTTTC-------TTCEEEEEETTSTTCCCCEEE
T ss_pred CceEEEEECCCCCCCceeEEeecCC-CCc--eEEEeeeeCCEEEEEeCCCCC-------CCcEEEEEcCCCcccceeeEE
Confidence 358999998875 56 6664321 111 12222 237788888654311 125789999876 67876 43
Q ss_pred cCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEc
Q 006384 173 LKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDL 216 (647)
Q Consensus 173 ~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~ 216 (647)
+. .....-......++.||+..-..+ ...++++|+
T Consensus 364 ~~--~~~~~l~~~~~~~~~lv~~~~~~g-------~~~l~~~dl 398 (751)
T 2xe4_A 364 DH--SEDVFMESIAVRSNYLVVAGRRAG-------LTRIWTMMA 398 (751)
T ss_dssp CC--CSSEEEEEEEECSSEEEEEEEETT-------EEEEEEEEC
T ss_pred CC--CCCcEEEEEEEECCEEEEEEEeCC-------EEEEEEEec
Confidence 31 111122233445777777654332 457888986
No 283
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=55.48 E-value=70 Score=35.50 Aligned_cols=80 Identities=10% Similarity=0.232 Sum_probs=41.1
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeE---EEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW---KVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTS 146 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W---~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~ 146 (647)
.+..+.| +++.++++......-.......++++|+.+++. ..+. .. ...+.+ +++.++|+.
T Consensus 63 ~~~~~Sp--Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~------~~--~~~~~~SPDG~~la~~~---- 128 (719)
T 1z68_A 63 SNYGLSP--DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP------RP--IQYLCWSPVGSKLAYVY---- 128 (719)
T ss_dssp SEEEECT--TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC------SS--BCCEEECSSTTCEEEEE----
T ss_pred eeEEECC--CCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC------cc--cccceECCCCCEEEEEE----
Confidence 3455555 566666655311000001235799999998876 3331 11 111223 444444442
Q ss_pred CCCccccccCcEEEEECCCCcEEEccc
Q 006384 147 PNQERFHHYKDFWMLDLKTNQWEQLNL 173 (647)
Q Consensus 147 ~~~~~~~~~~dv~~yD~~t~~W~~~~~ 173 (647)
-+.++++|+.++.-..+..
T Consensus 129 --------~~~i~~~~~~~g~~~~l~~ 147 (719)
T 1z68_A 129 --------QNNIYLKQRPGDPPFQITF 147 (719)
T ss_dssp --------TTEEEEESSTTSCCEECCC
T ss_pred --------CCeEEEEeCCCCCcEEEec
Confidence 1468888888777666543
No 284
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=55.45 E-value=1.7e+02 Score=29.13 Aligned_cols=16 Identities=13% Similarity=0.169 Sum_probs=11.1
Q ss_pred CcEEEEECC-CCeEEEe
Q 006384 101 GDLYRYDVE-KQEWKVI 116 (647)
Q Consensus 101 ndl~~yd~~-~~~W~~l 116 (647)
+.+++|++. +.+...+
T Consensus 167 ~~v~~~~~~~~g~~~~~ 183 (365)
T 1jof_A 167 NKLWTHRKLASGEVELV 183 (365)
T ss_dssp TEEEEEEECTTSCEEEE
T ss_pred CEEEEEEECCCCCEEEe
Confidence 468889987 6666543
No 285
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=54.55 E-value=1.7e+02 Score=28.83 Aligned_cols=201 Identities=8% Similarity=0.022 Sum_probs=106.4
Q ss_pred CcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCC----CeEEEecCCCCCCCcceeEEEE--ECCEEEEEeC
Q 006384 69 RSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEK----QEWKVISSPNSPPPRSAHQAVS--WKNYLYIFGG 142 (647)
Q Consensus 69 R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~----~~W~~l~s~~~P~~R~~ha~v~--~~~~iyv~GG 142 (647)
..-+++++.+. ++.||+.-.. .+.++++++.. .....+.......| +.+++ .++.||+.-.
T Consensus 30 ~~p~g~~~d~~-~~~ly~~D~~---------~~~I~~~~~~g~~~~~~~~~~~~~~~~~p---~glavd~~~~~ly~~d~ 96 (316)
T 1ijq_A 30 RNVVALDTEVA-SNRIYWSDLS---------QRMICSTQLDRAHGVSSYDTVISRDIQAP---DGLAVDWIHSNIYWTDS 96 (316)
T ss_dssp SSEEEEEEETT-TTEEEEEETT---------TTEEEEEEC--------CEEEECSSCSCC---CEEEEETTTTEEEEEET
T ss_pred CceEEEEEEeC-CCEEEEEECC---------CCcEEEEECCCCCCCcccEEEEeCCCCCc---CEEEEeecCCeEEEEEC
Confidence 34456666543 4788887651 24788999876 22222221111122 33444 3689999743
Q ss_pred CcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCc
Q 006384 143 EFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (647)
Q Consensus 143 ~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (647)
. .+.+.++++....-..+....+..| ...++. ++.||+..-. . ...|+++++....
T Consensus 97 ~-----------~~~I~~~~~~g~~~~~~~~~~~~~P---~~iavdp~~g~ly~~d~~-~-------~~~I~~~~~dG~~ 154 (316)
T 1ijq_A 97 V-----------LGTVSVADTKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDWG-T-------PAKIKKGGLNGVD 154 (316)
T ss_dssp T-----------TTEEEEEETTSSSEEEEEECTTCCE---EEEEEETTTTEEEEEECS-S-------SCEEEEEETTSCC
T ss_pred C-----------CCEEEEEeCCCCceEEEEECCCCCc---ceEEeCCCCCEEEEEccC-C-------CCeEEEEcCCCCC
Confidence 2 2568899987654444332122222 234443 6789987421 0 2468899886543
Q ss_pred eEEeccCCCCCCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCce
Q 006384 221 WQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRA 298 (647)
Q Consensus 221 W~~v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~ 298 (647)
-..+... . -..-.++++. ++.||+.-... +.|+++|+....-..+...+ .....
T Consensus 155 ~~~~~~~-----~-~~~P~gla~d~~~~~lY~~D~~~----------------~~I~~~d~dg~~~~~~~~~~--~~~~~ 210 (316)
T 1ijq_A 155 IYSLVTE-----N-IQWPNGITLDLLSGRLYWVDSKL----------------HSISSIDVNGGNRKTILEDE--KRLAH 210 (316)
T ss_dssp EEEEECS-----S-CSCEEEEEEETTTTEEEEEETTT----------------TEEEEEETTSCSCEEEEECT--TTTSS
T ss_pred eEEEEEC-----C-CCCceEEEEeccCCEEEEEECCC----------------CeEEEEecCCCceEEEeecC--CccCC
Confidence 3333221 1 1112234444 68899876433 24888888653323332210 11223
Q ss_pred eeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 299 GFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 299 ~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
-.++++.++.||+.-.. .+.|+++|+.+.+
T Consensus 211 P~giav~~~~ly~~d~~--------------~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 211 PFSLAVFEDKVFWTDII--------------NEAIFSANRLTGS 240 (316)
T ss_dssp EEEEEEETTEEEEEETT--------------TTEEEEEETTTCC
T ss_pred cEEEEEECCEEEEEECC--------------CCeEEEEeCCCCc
Confidence 35677778888886521 3569999986654
No 286
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=53.54 E-value=1.9e+02 Score=29.26 Aligned_cols=202 Identities=12% Similarity=0.085 Sum_probs=97.6
Q ss_pred CcEEEEECCCCeEEEecCCC----CCCCcceeEEEEE----CCEEEEEe---CCcCCCCCccccccCcEEEEECC---CC
Q 006384 101 GDLYRYDVEKQEWKVISSPN----SPPPRSAHQAVSW----KNYLYIFG---GEFTSPNQERFHHYKDFWMLDLK---TN 166 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~----~P~~R~~ha~v~~----~~~iyv~G---G~~~~~~~~~~~~~~dv~~yD~~---t~ 166 (647)
..++.|++..+.-..+..+. .........+.+. .++|+|+- ..+....+ +..-.+.|.+||+. ++
T Consensus 35 g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~-~~~g~~~v~~~Dl~~~~tg 113 (334)
T 2p9w_A 35 GRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ-SSHGASSFHSFNLPLSENS 113 (334)
T ss_dssp TEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC-CSSSCCEEEEEESSCCTTC
T ss_pred CEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc-ccCCCCEEEEEcCCcCCCC
Confidence 47888999866443442211 1111222334441 47888862 11111111 01124679999988 44
Q ss_pred --cEEEcccCCCCCC-------cce-eEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCc---eEEeccCCCCC
Q 006384 167 --QWEQLNLKGCPSP-------RSG-HRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK---WQEIKPRFGSM 231 (647)
Q Consensus 167 --~W~~~~~~~~P~~-------R~~-h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~---W~~v~~~~~~~ 231 (647)
.|..--.. .... +.+ ..-+++ .+.+||.+-+. ...|+++++.... |-.-.+.
T Consensus 114 ~~~~~~dL~~-~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~--------~~~I~rV~pdG~~~~~~~~~~~~---- 180 (334)
T 2p9w_A 114 KPVWSVNFEK-VQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALG--------MPAIARVSADGKTVSTFAWESGN---- 180 (334)
T ss_dssp CCSEEEESHH-HHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEES--------SCEEEEECTTSCCEEEEEECCCC----
T ss_pred CEEEEecCcc-ccccccccccccccCCceeEECCCCCEEEeCCCC--------CCeEEEEeCCCCEEeeeeecCCC----
Confidence 45432110 0001 222 222333 67999976642 1569999987543 4322111
Q ss_pred CCCCceee-eEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecC--CCCCC--CceeeEEEE
Q 006384 232 WPSPRSGF-QFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI--GMPPG--PRAGFSMCV 304 (647)
Q Consensus 232 ~P~~R~~~-s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~--g~~P~--~R~~~s~~~ 304 (647)
+..+.|. ++++. +..|++..+ .+. +++||+.+.....++.. |.... .--+....-
T Consensus 181 -~~~~~G~nGIv~~pdg~~Liv~~~-~g~----------------L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~ 242 (334)
T 2p9w_A 181 -GGQRPGYSGITFDPHSNKLIAFGG-PRA----------------LTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVP 242 (334)
T ss_dssp -SSSCCSCSEEEEETTTTEEEEESS-SSS----------------EEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEE
T ss_pred -cccccCcceEEEeCCCCEEEEEcC-CCe----------------EEEEcCCCCcceeecccccCCcccccCcccccccc
Confidence 2334444 34444 556777766 444 88999875433122221 21101 111221223
Q ss_pred ECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEec
Q 006384 305 HKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELR 349 (647)
Q Consensus 305 ~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~ 349 (647)
.+++++++.-. .+.++++--..+ |......
T Consensus 243 ~~G~vllV~~~--------------~~~~~~l~S~Dg-W~sa~~~ 272 (334)
T 2p9w_A 243 VGNESVLVGAR--------------APYAISFRSWDN-WKSANIK 272 (334)
T ss_dssp ETTEEEEEEEE--------------TTEEEEEECSST-TSEEEEE
T ss_pred cCCEEEEEEcC--------------CCCEEEEECCCC-cceeEEe
Confidence 68888776542 133555554444 8887763
No 287
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A
Probab=53.38 E-value=31 Score=33.14 Aligned_cols=63 Identities=11% Similarity=0.047 Sum_probs=35.8
Q ss_pred ECCEEEEEeCCcCCCCCccccccCcEEEEECCC--CcE------EEcccC--CCCC---CcceeEEEEE--CCEEEEEec
Q 006384 133 WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT--NQW------EQLNLK--GCPS---PRSGHRMVLY--KHKIIVFGG 197 (647)
Q Consensus 133 ~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t--~~W------~~~~~~--~~P~---~R~~h~~~~~--~~~lyv~GG 197 (647)
.++.+|+|-| +.+|+|+... ... ..+... ++|. +..--++..+ ++++|+|-|
T Consensus 71 ~~g~~~fFKg-------------~~~Wr~~~~~~~~~~~~~~gP~~I~~~w~gLp~~~~p~~IDAA~~~~~~~k~yfFkG 137 (227)
T 3lp9_A 71 ENNEAFIFYE-------------NFCALIDYAPHSKKDKIILGPKKIADVFPFFEGTVFESGIDAAYRSTRGKEVYLFKG 137 (227)
T ss_dssp STTEEEEEET-------------TEEEEEECCTTTCCCEEEEEEEEHHHHSGGGTTSTTTTCCSEEEECSSTTEEEEEET
T ss_pred CCCEEEEEeC-------------CEEEEEeCCCCccccccccCceEHhhhcCCCCCccCCCcccEEEEECCCCEEEEEEC
Confidence 4799999988 4689998321 111 111111 2231 1112233333 689999988
Q ss_pred ccCCCCceeeeCcEEEEEcCCC
Q 006384 198 FYDTLREVRYYNDLYVFDLDQF 219 (647)
Q Consensus 198 ~~~~~~~~~~~~dv~~yD~~t~ 219 (647)
+..|+||..++
T Consensus 138 -----------~~yw~~d~~~~ 148 (227)
T 3lp9_A 138 -----------DQYARIDYGSN 148 (227)
T ss_dssp -----------TEEEEEETTTT
T ss_pred -----------CEEEEEeCCCc
Confidence 45789987654
No 288
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=52.80 E-value=1.7e+02 Score=28.41 Aligned_cols=106 Identities=13% Similarity=0.124 Sum_probs=54.1
Q ss_pred CcEEEEECCCCeE-EEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccc-cCcEEEEECCCCcEEEcccCCCCC
Q 006384 101 GDLYRYDVEKQEW-KVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHH-YKDFWMLDLKTNQWEQLNLKGCPS 178 (647)
Q Consensus 101 ndl~~yd~~~~~W-~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~-~~dv~~yD~~t~~W~~~~~~~~P~ 178 (647)
..+|++|+.+.+. +.+.. + .....+...+.|++.+....... ... ...+|.+| +..+..+.. .
T Consensus 152 ~~l~~~d~~~~~~~~~l~~---~---~~~~~~~spdg~~~~~~~~~~~~---~~~~~~~l~~~d--~~~~~~l~~---~- 216 (347)
T 2gop_A 152 TTFWIFDTESEEVIEEFEK---P---RFSSGIWHRDKIVVNVPHREIIP---QYFKFWDIYIWE--DGKEEKMFE---K- 216 (347)
T ss_dssp EEEEEEETTTTEEEEEEEE---E---TTCEEEEETTEEEEEEECCCSSC---CSSCCEEEEEEE--TTEEEEEEE---E-
T ss_pred ceEEEEECCCCeEEeeecC---C---CcccccCCCCeEEEEEecccccc---cccccccEEEeC--CCceEEecc---C-
Confidence 5799999999887 66643 1 22233333433444443221100 001 35789999 777776654 1
Q ss_pred CcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEecc
Q 006384 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (647)
Q Consensus 179 ~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~ 226 (647)
.......-+++.+++++..... .......|+++| +..+..+..
T Consensus 217 --~~~~~~spdg~~l~~~~~~~~~-~~~~~~~l~~~d--~~~~~~l~~ 259 (347)
T 2gop_A 217 --VSFYAVDSDGERILLYGKPEKK-YMSEHNKLYIYD--GKEVMGILD 259 (347)
T ss_dssp --ESEEEEEECSSCEEEEECCSSS-CCCSSCEEEEEC--SSCEEESST
T ss_pred --cceeeECCCCCEEEEEEccccC-CccccceEEEEC--CCceEeccc
Confidence 1122224455544444432210 011235789999 666666543
No 289
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=52.36 E-value=1.9e+02 Score=28.92 Aligned_cols=195 Identities=9% Similarity=-0.020 Sum_probs=105.5
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEE--ECCEEEEEeCCcCCCCC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVS--WKNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~--~~~~iyv~GG~~~~~~~ 149 (647)
.++.+.+. ++.||+.--. .+.++++++.....+.+.......| ..+++ .++.||+.-..
T Consensus 76 ~~l~~d~~-~~~ly~~D~~---------~~~I~r~~~~g~~~~~~~~~~~~~p---~glavd~~~g~ly~~d~~------ 136 (349)
T 3v64_C 76 IALDFHHR-RELVFWSDVT---------LDRILRANLNGSNVEEVVSTGLESP---GGLAVDWVHDKLYWTDSG------ 136 (349)
T ss_dssp EEEEEETT-TTEEEEEETT---------TTEEEEEETTSCSCEEEECSSCSCC---CEEEEETTTTEEEEEETT------
T ss_pred EEEEEecc-ccEEEEEecc---------CCceEEEecCCCCceEEEeCCCCCc---cEEEEecCCCeEEEEcCC------
Confidence 44444432 4677776431 2468888888766555433221122 23333 36899987542
Q ss_pred ccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccC
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (647)
.+.++++++....-..+....+..| ..+++- ++.||+.--.. ...|+++++....-+.+...
T Consensus 137 -----~~~I~~~~~dG~~~~~l~~~~l~~P---~~iavdp~~g~ly~td~~~--------~~~I~r~~~dG~~~~~~~~~ 200 (349)
T 3v64_C 137 -----TSRIEVANLDGAHRKVLLWQSLEKP---RAIALHPMEGTIYWTDWGN--------TPRIEASSMDGSGRRIIADT 200 (349)
T ss_dssp -----TTEEEEEETTSCSCEEEECTTCSCE---EEEEEETTTTEEEEEECSS--------SCEEEEEETTSCSCEESCCS
T ss_pred -----CCeEEEEcCCCCceEEEEeCCCCCc---ceEEEecCcCeEEEeccCC--------CCEEEEEeCCCCCcEEEEEC
Confidence 2568899987665444433222223 234443 67888864211 25689998876443333221
Q ss_pred CCCCCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE
Q 006384 228 FGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (647)
Q Consensus 228 ~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~ 305 (647)
. -..-.++++. ++.||+.-... ..|+++++....-..+...+ ...-+++++.
T Consensus 201 -----~-~~~PnGla~d~~~~~lY~aD~~~----------------~~I~~~~~dG~~~~~~~~~~----~~~P~giav~ 254 (349)
T 3v64_C 201 -----H-LFWPNGLTIDYAGRRMYWVDAKH----------------HVIERANLDGSHRKAVISQG----LPHPFAITVF 254 (349)
T ss_dssp -----S-CSCEEEEEEETTTTEEEEEETTT----------------TEEEEEETTSCSCEEEECSS----CSSEEEEEEE
T ss_pred -----C-CCCcceEEEeCCCCEEEEEECCC----------------CEEEEEeCCCCceEEEEeCC----CCCceEEEEE
Confidence 0 0111234443 78899885432 24888887653322222211 1223566678
Q ss_pred CCeEEEecceeccccCccccccccCCcEEEEECCCC
Q 006384 306 KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (647)
Q Consensus 306 ~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (647)
.+.||+.-.. .+.|+++|..+.
T Consensus 255 ~~~ly~td~~--------------~~~V~~~~~~~G 276 (349)
T 3v64_C 255 EDSLYWTDWH--------------TKSINSANKFTG 276 (349)
T ss_dssp TTEEEEEETT--------------TTEEEEEETTTC
T ss_pred CCEEEEecCC--------------CCeEEEEEccCC
Confidence 8899987532 356888885444
No 290
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=52.04 E-value=2.1e+02 Score=29.17 Aligned_cols=174 Identities=9% Similarity=0.026 Sum_probs=96.8
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCC
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~ 178 (647)
+.++++++.......+... .....+++.. ++.||+.--. ...|+++++.......+...++..
T Consensus 96 ~~I~~i~~~~~~~~~~~~~----~~~~~gl~~d~~~~~ly~~D~~-----------~~~I~r~~~~g~~~~~~~~~~~~~ 160 (386)
T 3v65_B 96 IDIRQVLPHRSEYTLLLNN----LENAIALDFHHRRELVFWSDVT-----------LDRILRANLNGSNVEEVVSTGLES 160 (386)
T ss_dssp SCEEEECTTSCCCEEEECS----CSCEEEEEEETTTTEEEEEETT-----------TTEEEEEETTSCCEEEEECSSCSC
T ss_pred ccceeeccCCCcEEEEecC----CCccEEEEEecCCCeEEEEeCC-----------CCcEEEEecCCCCcEEEEeCCCCC
Confidence 4678888887766655431 2233444444 5889988431 257999999888766664433322
Q ss_pred CcceeEEEE--ECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe--CCEEEEEecc
Q 006384 179 PRSGHRMVL--YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGY 254 (647)
Q Consensus 179 ~R~~h~~~~--~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~GG~ 254 (647)
| .++++ .++.||+.-.. .+.++++++....-..+... ....| .++++. ++.||+.-..
T Consensus 161 p---~glavd~~~g~lY~~d~~---------~~~I~~~~~dg~~~~~l~~~---~l~~P---~giavdp~~g~ly~td~~ 222 (386)
T 3v65_B 161 P---GGLAVDWVHDKLYWTDSG---------TSRIEVANLDGAHRKVLLWQ---SLEKP---RAIALHPMEGTIYWTDWG 222 (386)
T ss_dssp C---CCEEEETTTTEEEEEETT---------TTEEEECBTTSCSCEEEECS---SCSCE---EEEEEETTTTEEEEEECS
T ss_pred c---cEEEEEeCCCeEEEEcCC---------CCeEEEEeCCCCceEEeecC---CCCCC---cEEEEEcCCCeEEEeccC
Confidence 2 22333 37899987542 34678888775543333221 11222 233444 6788876422
Q ss_pred cCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE--CCeEEEecceeccccCccccccccCCc
Q 006384 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNE 332 (647)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~--~~~iyifGG~~~~~~~~~~~~~~~~nd 332 (647)
. ...|+++++....-..+...+ ...-.++++- +++||+.-.. .+.
T Consensus 223 ~---------------~~~I~r~~~dG~~~~~~~~~~----~~~PnGlavd~~~~~lY~aD~~--------------~~~ 269 (386)
T 3v65_B 223 N---------------TPRIEASSMDGSGRRIIADTH----LFWPNGLTIDYAGRRMYWVDAK--------------HHV 269 (386)
T ss_dssp S---------------SCEEEEEETTSCSCEEEECSS----CSCEEEEEEEGGGTEEEEEETT--------------TTE
T ss_pred C---------------CCEEEEEeCCCCCcEEEEECC----CCCeeeEEEeCCCCEEEEEECC--------------CCE
Confidence 1 235889988654333332211 1122344543 6788887421 356
Q ss_pred EEEEECCC
Q 006384 333 LYGFQLDN 340 (647)
Q Consensus 333 l~~yd~~t 340 (647)
|++||+..
T Consensus 270 I~~~d~dG 277 (386)
T 3v65_B 270 IERANLDG 277 (386)
T ss_dssp EEEECTTS
T ss_pred EEEEeCCC
Confidence 88888764
No 291
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=50.98 E-value=2.2e+02 Score=29.05 Aligned_cols=201 Identities=8% Similarity=-0.026 Sum_probs=107.4
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~ 149 (647)
.++++.+. ++.||+.-- ..+.++++++.....+.+.......| ..+++. ++.||+.-..
T Consensus 119 ~gl~~d~~-~~~ly~~D~---------~~~~I~r~~~~g~~~~~~~~~~~~~p---~glavd~~~g~lY~~d~~------ 179 (386)
T 3v65_B 119 IALDFHHR-RELVFWSDV---------TLDRILRANLNGSNVEEVVSTGLESP---GGLAVDWVHDKLYWTDSG------ 179 (386)
T ss_dssp EEEEEETT-TTEEEEEET---------TTTEEEEEETTSCCEEEEECSSCSCC---CCEEEETTTTEEEEEETT------
T ss_pred EEEEEecC-CCeEEEEeC---------CCCcEEEEecCCCCcEEEEeCCCCCc---cEEEEEeCCCeEEEEcCC------
Confidence 34444432 466776543 12468888988776665543222122 223333 6889987542
Q ss_pred ccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccC
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (647)
.+.++++++....-..+...++..| ..+++. ++.||+.--.. ...|+++++....-..+...
T Consensus 180 -----~~~I~~~~~dg~~~~~l~~~~l~~P---~giavdp~~g~ly~td~~~--------~~~I~r~~~dG~~~~~~~~~ 243 (386)
T 3v65_B 180 -----TSRIEVANLDGAHRKVLLWQSLEKP---RAIALHPMEGTIYWTDWGN--------TPRIEASSMDGSGRRIIADT 243 (386)
T ss_dssp -----TTEEEECBTTSCSCEEEECSSCSCE---EEEEEETTTTEEEEEECSS--------SCEEEEEETTSCSCEEEECS
T ss_pred -----CCeEEEEeCCCCceEEeecCCCCCC---cEEEEEcCCCeEEEeccCC--------CCEEEEEeCCCCCcEEEEEC
Confidence 2468888887654444433222222 233443 67888863210 25789999876544333221
Q ss_pred CCCCCCCCceeeeEEE--eCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE
Q 006384 228 FGSMWPSPRSGFQFFV--YQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (647)
Q Consensus 228 ~~~~~P~~R~~~s~~~--~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~ 305 (647)
. .. .-.++++ .++.||+.-... +.|+++++....-..+...+ ...-.++++.
T Consensus 244 ~---~~---~PnGlavd~~~~~lY~aD~~~----------------~~I~~~d~dG~~~~~~~~~~----~~~P~giav~ 297 (386)
T 3v65_B 244 H---LF---WPNGLTIDYAGRRMYWVDAKH----------------HVIERANLDGSHRKAVISQG----LPHPFAITVF 297 (386)
T ss_dssp S---CS---CEEEEEEEGGGTEEEEEETTT----------------TEEEEECTTSCSCEEEECSS----CSSEEEEEEE
T ss_pred C---CC---CeeeEEEeCCCCEEEEEECCC----------------CEEEEEeCCCCeeEEEEECC----CCCceEEEEE
Confidence 0 01 1123444 378999885432 34888887643322222211 1223566778
Q ss_pred CCeEEEecceeccccCccccccccCCcEEEEECCCC-cEEEeE
Q 006384 306 KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH-RWYPLE 347 (647)
Q Consensus 306 ~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~-~W~~l~ 347 (647)
.+.||+.--. .+.|+++|..+. .-..+.
T Consensus 298 ~~~ly~td~~--------------~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 298 EDSLYWTDWH--------------TKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp TTEEEEEETT--------------TTEEEEEETTTCCSCEEEE
T ss_pred CCEEEEeeCC--------------CCeEEEEECCCCcceEEEc
Confidence 8899987532 356899995444 333444
No 292
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=49.73 E-value=2.8e+02 Score=29.96 Aligned_cols=161 Identities=11% Similarity=0.065 Sum_probs=80.4
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEec-CCCCC--CCcceeEEEEE--CCEEEEEeCCcCCC
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVIS-SPNSP--PPRSAHQAVSW--KNYLYIFGGEFTSP 147 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~-s~~~P--~~R~~ha~v~~--~~~iyv~GG~~~~~ 147 (647)
++.+.| ++.+++.||. + +.+..||..+.+....- ..... .....-..+.+ ++.+++.||..
T Consensus 195 ~v~fsp--dg~~las~s~--D-------~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D--- 260 (611)
T 1nr0_A 195 SVRYNP--DGSLFASTGG--D-------GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD--- 260 (611)
T ss_dssp EEEECT--TSSEEEEEET--T-------SCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT---
T ss_pred EEEECC--CCCEEEEEEC--C-------CcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCC---
Confidence 344444 4556666662 2 35778887776544321 11000 00111122333 46667777643
Q ss_pred CCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccC
Q 006384 148 NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (647)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (647)
..+.+||+.+......-..+ .........+.+.+..++.++.+ ..+..+|+.+..-......
T Consensus 261 --------~~v~lWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~s~s~d---------~~i~~~~~~~~~~~~~~~g 322 (611)
T 1nr0_A 261 --------KTIKIWNVATLKVEKTIPVG-TRIEDQQLGIIWTKQALVSISAN---------GFINFVNPELGSIDQVRYG 322 (611)
T ss_dssp --------SEEEEEETTTTEEEEEEECC-SSGGGCEEEEEECSSCEEEEETT---------CCEEEEETTTTEEEEEECC
T ss_pred --------CeEEEEeCCCCceeeeecCC-CCccceeEEEEEcCCEEEEEeCC---------CcEEEEeCCCCCcceEEcC
Confidence 45888999887765432211 11112223344566666666643 3467778776542222111
Q ss_pred CCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEe
Q 006384 228 FGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (647)
Q Consensus 228 ~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v 287 (647)
....-.+++.. ++..++.|+.++. +.++|+.+.....+
T Consensus 323 ------h~~~v~~l~~spdg~~l~s~s~D~~----------------v~~Wd~~~~~~~~~ 361 (611)
T 1nr0_A 323 ------HNKAITALSSSADGKTLFSADAEGH----------------INSWDISTGISNRV 361 (611)
T ss_dssp ------CSSCEEEEEECTTSSEEEEEETTSC----------------EEEEETTTCCEEEC
T ss_pred ------CCCCEEEEEEeCCCCEEEEEeCCCc----------------EEEEECCCCceeee
Confidence 11111222222 6677777777655 77888877655443
No 293
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=49.39 E-value=2e+02 Score=28.23 Aligned_cols=174 Identities=9% Similarity=0.082 Sum_probs=94.0
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCC----CcEEEcccC
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT----NQWEQLNLK 174 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t----~~W~~~~~~ 174 (647)
+.+.++|+.+.....+.. ....-++++.. ++.||+.-.. ...++++++.. .....+...
T Consensus 10 ~~I~~i~~~~~~~~~~~~----~~~~p~g~~~d~~~~~ly~~D~~-----------~~~I~~~~~~g~~~~~~~~~~~~~ 74 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIP----NLRNVVALDTEVASNRIYWSDLS-----------QRMICSTQLDRAHGVSSYDTVISR 74 (316)
T ss_dssp SSEEEEETTSCCCEEEEC----SCSSEEEEEEETTTTEEEEEETT-----------TTEEEEEEC--------CEEEECS
T ss_pred CeEEEEECCCcceEehhc----CCCceEEEEEEeCCCEEEEEECC-----------CCcEEEEECCCCCCCcccEEEEeC
Confidence 468889998877665532 22334555554 5789998642 25789999876 222222221
Q ss_pred CCCCCcceeEEEE--ECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe--CCEEEE
Q 006384 175 GCPSPRSGHRMVL--YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFL 250 (647)
Q Consensus 175 ~~P~~R~~h~~~~--~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~Iyv 250 (647)
+...| +++++ .++.||+.-.. .+.|.++++....-..+... ....|+ .+++. ++.||+
T Consensus 75 ~~~~p---~glavd~~~~~ly~~d~~---------~~~I~~~~~~g~~~~~~~~~---~~~~P~---~iavdp~~g~ly~ 136 (316)
T 1ijq_A 75 DIQAP---DGLAVDWIHSNIYWTDSV---------LGTVSVADTKGVKRKTLFRE---NGSKPR---AIVVDPVHGFMYW 136 (316)
T ss_dssp SCSCC---CEEEEETTTTEEEEEETT---------TTEEEEEETTSSSEEEEEEC---TTCCEE---EEEEETTTTEEEE
T ss_pred CCCCc---CEEEEeecCCeEEEEECC---------CCEEEEEeCCCCceEEEEEC---CCCCcc---eEEeCCCCCEEEE
Confidence 11222 33444 37899987432 35688888876543333221 012222 34443 788888
Q ss_pred EecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE--CCeEEEecceeccccCccccccc
Q 006384 251 YGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSL 328 (647)
Q Consensus 251 ~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~--~~~iyifGG~~~~~~~~~~~~~~ 328 (647)
..... ...|+++++....-+.+... ....-.++++- +++||+.-..
T Consensus 137 ~d~~~---------------~~~I~~~~~dG~~~~~~~~~----~~~~P~gla~d~~~~~lY~~D~~------------- 184 (316)
T 1ijq_A 137 TDWGT---------------PAKIKKGGLNGVDIYSLVTE----NIQWPNGITLDLLSGRLYWVDSK------------- 184 (316)
T ss_dssp EECSS---------------SCEEEEEETTSCCEEEEECS----SCSCEEEEEEETTTTEEEEEETT-------------
T ss_pred EccCC---------------CCeEEEEcCCCCCeEEEEEC----CCCCceEEEEeccCCEEEEEECC-------------
Confidence 75321 13488888865443333221 11223345554 6788876432
Q ss_pred cCCcEEEEECCC
Q 006384 329 FLNELYGFQLDN 340 (647)
Q Consensus 329 ~~ndl~~yd~~t 340 (647)
.+.|++||+..
T Consensus 185 -~~~I~~~d~dg 195 (316)
T 1ijq_A 185 -LHSISSIDVNG 195 (316)
T ss_dssp -TTEEEEEETTS
T ss_pred -CCeEEEEecCC
Confidence 35689998864
No 294
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=47.27 E-value=89 Score=34.77 Aligned_cols=101 Identities=14% Similarity=0.331 Sum_probs=53.8
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCC-eEE--EecCC--CCCCCcceeEEEEE--CCEEEEEeCCcCCCCCcccc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ-EWK--VISSP--NSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFH 153 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~-~W~--~l~s~--~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~ 153 (647)
.+++|+|=|. .+|+++.... ... .|... .+| ..--++... ++++|+|-|
T Consensus 453 rg~~yfFKg~-----------~yWr~~~~~~~~~~P~~Is~~wp~LP--~~IDAA~~~~~~~k~yFFkG----------- 508 (631)
T 1ck7_A 453 RGEIFFFKDR-----------FIWRTVTPRDKPMGPLLVATFWPELP--EKIDAVYEAPQEEKAVFFAG----------- 508 (631)
T ss_dssp SSSEEEECSS-----------EEEEESCTTSCCEEEEEGGGTCTTSC--SSCSBCCEETTTTEEEEEET-----------
T ss_pred CCcEEEEcCC-----------EEEEEcCCCCCCCCceeccccCCCCC--ccceEEEEECCCCEEEEEec-----------
Confidence 6889999883 5677765442 121 22211 122 222233333 578999977
Q ss_pred ccCcEEEEECCCC--cE-EEcccCCCCCC--cceeEEEE--ECCEEEEEecccCCCCceeeeCcEEEEEcCCC
Q 006384 154 HYKDFWMLDLKTN--QW-EQLNLKGCPSP--RSGHRMVL--YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (647)
Q Consensus 154 ~~~dv~~yD~~t~--~W-~~~~~~~~P~~--R~~h~~~~--~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (647)
+.+|+|+..+. -+ ..+...+.|.. +.. ++.. .++++|+|-| +..|+||..+.
T Consensus 509 --~~yWry~~~~l~~GYPk~Is~~G~P~~~~~ID-AAf~~~~~gktYFFkG-----------~~ywryd~~~~ 567 (631)
T 1ck7_A 509 --NEYWIYSASTLERGYPKPLTSLGLPPDVQRVD-AAFNWSKNKKTYIFAG-----------DKFWRYNEVKK 567 (631)
T ss_dssp --TEEEEEETTEECTTCCEEGGGGTCCTTCCCCC-BCCCCTTTCEEEEEET-----------TEEEEEETTTT
T ss_pred --CEEEEECCCccccCCCccchhcCCCCCCCcce-eEEEecCCCeEEEEEC-----------CEEEEEcCCcc
Confidence 56899985211 00 12222233321 222 2222 3689999987 46789997654
No 295
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=46.85 E-value=1.3e+02 Score=31.08 Aligned_cols=126 Identities=7% Similarity=-0.041 Sum_probs=64.9
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcE
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv 211 (647)
++.+||.-.... ...+.|+++|+.+++-...- |.....| +++. +.++|+...+..........+.|
T Consensus 44 ~~~vyV~~~~~~-------~~~~~V~ViD~~t~~v~~~I----~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~V 111 (386)
T 3sjl_D 44 ARRVYVNDPAHF-------AAVTQQFVIDGEAGRVIGMI----DGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYV 111 (386)
T ss_dssp TTEEEEEECGGG-------CSSEEEEEEETTTTEEEEEE----EECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CCEEEEEcCccc-------CCCCEEEEEECCCCeEEEEE----ECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEE
Confidence 567888754311 11367999999988643222 2222235 4433 45688875332111101124679
Q ss_pred EEEEcCCCceEEeccCCC-CCCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEE
Q 006384 212 YVFDLDQFKWQEIKPRFG-SMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (647)
Q Consensus 212 ~~yD~~t~~W~~v~~~~~-~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (647)
.+||+.+.+-..--..+. ........-+.+++. +..+||..... .+.+.++|+.+.+-..
T Consensus 112 sviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~---------------~~~VsVID~~t~~vv~ 174 (386)
T 3sjl_D 112 EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP---------------APAVGVVDLEGKAFKR 174 (386)
T ss_dssp EEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSS---------------SCEEEEEETTTTEEEE
T ss_pred EEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCC---------------CCeEEEEECCCCcEEE
Confidence 999999987543222211 000111122334444 55778764211 2358899998876443
No 296
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=45.88 E-value=2.6e+02 Score=28.59 Aligned_cols=198 Identities=8% Similarity=0.009 Sum_probs=104.1
Q ss_pred cceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCC----eEEEecCCCCCCCcceeEEEEE--CCEEEEEeCC
Q 006384 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ----EWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGE 143 (647)
Q Consensus 70 ~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~----~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~ 143 (647)
.-.++.+.+. ++.||+.--. .+.++++++... ....+.... ...-..+++. ++.||+.-..
T Consensus 113 ~~~~l~~d~~-~~~lywsD~~---------~~~I~~~~~~g~~~~~~~~~~~~~~---~~~p~glavD~~~~~lY~~d~~ 179 (400)
T 3p5b_L 113 NVVALDTEVA-SNRIYWSDLS---------QRMICSTQLDRAHGVSSYDTVISRD---IQAPDGLAVDWIHSNIYWTDSV 179 (400)
T ss_dssp CEEEEEEETT-TTEEEEEETT---------TTEEEEEEC------CCCEEEECSS---CSCEEEEEEETTTTEEEEEETT
T ss_pred cceEEeeeec-cCceEEEecC---------CCeEEEEEcccCCCCCcceEEEeCC---CCCcccEEEEecCCceEEEECC
Confidence 3344555432 4677766431 135778877652 222232211 1222333443 7899998542
Q ss_pred cCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCce
Q 006384 144 FTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (647)
Q Consensus 144 ~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W 221 (647)
...|+++++....-..+....+..|+ ..++. ++.||+.--. ....|+++++....=
T Consensus 180 -----------~~~I~~~~~~g~~~~~l~~~~~~~P~---~iavdp~~g~ly~td~~--------~~~~I~~~~~dG~~~ 237 (400)
T 3p5b_L 180 -----------LGTVSVADTKGVKRKTLFRENGSKPR---AIVVDPVHGFMYWTDWG--------TPAKIKKGGLNGVDI 237 (400)
T ss_dssp -----------TTEEEEECTTTCSEEEEEECSSCCEE---EEEEETTTTEEEEEECS--------SSCCEEEEETTSCSC
T ss_pred -----------CCeEEEEeCCCCceEEEEeCCCCCcc---eEEEecccCeEEEEeCC--------CCCEEEEEeCCCCcc
Confidence 25688999887765555432222332 34443 6788886411 024688898875433
Q ss_pred EEeccCCCCCCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEe-ecCCCCCCCce
Q 006384 222 QEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV-KKIGMPPGPRA 298 (647)
Q Consensus 222 ~~v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v-~~~g~~P~~R~ 298 (647)
..+... . +. .-.++++- ++.||+.-... +.|+++|+....-..+ ...+.. ..
T Consensus 238 ~~~~~~-~--l~---~P~glavd~~~~~lY~aD~~~----------------~~I~~~d~dG~~~~~~~~~~~~l---~~ 292 (400)
T 3p5b_L 238 YSLVTE-N--IQ---WPNGITLDLLSGRLYWVDSKL----------------HSISSIDVNGGNRKTILEDEKRL---AH 292 (400)
T ss_dssp EEEECS-S--CS---CEEEEEEETTTTEEEEEETTT----------------TEEEEEETTSCCCEEEEECSSTT---SS
T ss_pred EEEEEC-C--CC---ceEEEEEEeCCCEEEEEECCC----------------CEEEEEeCCCCccEEEEeCCCCC---CC
Confidence 333221 0 01 11234443 78999985432 3488888865433333 221111 23
Q ss_pred eeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCC
Q 006384 299 GFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (647)
Q Consensus 299 ~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (647)
.+++++.++.||+.--. .+.|+++|..+.
T Consensus 293 P~gl~v~~~~lywtd~~--------------~~~V~~~~~~~G 321 (400)
T 3p5b_L 293 PFSLAVFEDKVFWTDII--------------NEAIFSANRLTG 321 (400)
T ss_dssp EEEEEEETTEEEEEESS--------------SCSEEEEESSSC
T ss_pred CEEEEEeCCEEEEecCC--------------CCeEEEEEcCCC
Confidence 45777788999987522 356889986544
No 297
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=44.59 E-value=3.5e+02 Score=29.62 Aligned_cols=18 Identities=6% Similarity=-0.103 Sum_probs=13.6
Q ss_pred CcEEEEEcCCCceEEecc
Q 006384 209 NDLYVFDLDQFKWQEIKP 226 (647)
Q Consensus 209 ~dv~~yD~~t~~W~~v~~ 226 (647)
..|+.+|+.+.....+..
T Consensus 337 ~~l~~~~~~~~~~~~lt~ 354 (719)
T 1z68_A 337 KHIHYIKDTVENAIQITS 354 (719)
T ss_dssp EEEEEESSCSTTCEECSC
T ss_pred eEEEEEECCCCceEeccc
Confidence 568999998887666643
No 298
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=43.25 E-value=2.8e+02 Score=28.09 Aligned_cols=76 Identities=7% Similarity=-0.150 Sum_probs=40.1
Q ss_pred CCEEEEEecccCCCCceeeeCcEEEEEcCCCce-EEeccCCCCCCCCCceeeeEEEe-CCE-EEEEecccCCCCCcccCC
Q 006384 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW-QEIKPRFGSMWPSPRSGFQFFVY-QDE-VFLYGGYSKEVSTDKNQS 265 (647)
Q Consensus 189 ~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W-~~v~~~~~~~~P~~R~~~s~~~~-~~~-Iyv~GG~~~~~~~~~~~~ 265 (647)
+++||+..............+.|+++|+.+.+- ..++ .+...+++++. +++ +++.+...
T Consensus 278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~--------~g~~p~~i~~s~Dg~~~l~v~~~~---------- 339 (373)
T 2mad_H 278 SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS--------LGHDVDAISVAQDGGPDLYALSAG---------- 339 (373)
T ss_pred CCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE--------CCCCcCeEEECCCCCeEEEEEcCC----------
Confidence 578898754211110011246899999988764 3332 22223444444 344 33333321
Q ss_pred CCCceeeeEEEEeCCCCeEEEe
Q 006384 266 EKGIIHSDLWSLDPRTWEWSKV 287 (647)
Q Consensus 266 ~~~~~~~dv~~yd~~t~~W~~v 287 (647)
.+++.+||+.+.+-...
T Consensus 340 -----~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 340 -----TEVLHIYDAGAGDQDQS 356 (373)
T ss_pred -----CCeEEEEECCCCCEEee
Confidence 14599999987655443
No 299
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=43.16 E-value=2.8e+02 Score=28.16 Aligned_cols=16 Identities=19% Similarity=0.268 Sum_probs=12.1
Q ss_pred eeEEEEE-CCEEEEEeC
Q 006384 127 AHQAVSW-KNYLYIFGG 142 (647)
Q Consensus 127 ~ha~v~~-~~~iyv~GG 142 (647)
.|+++.. ++.||.+|-
T Consensus 117 ~h~~al~~~G~v~~wG~ 133 (389)
T 3kci_A 117 KHCLALSSEGEVYSWGE 133 (389)
T ss_dssp SEEEEEETTSCEEEEEC
T ss_pred CeEEEEcCCCCEEEEeC
Confidence 4666665 789999994
No 300
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=41.25 E-value=4.5e+02 Score=29.93 Aligned_cols=174 Identities=9% Similarity=0.079 Sum_probs=92.2
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCC----cEEEcccCC
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN----QWEQLNLKG 175 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~----~W~~~~~~~ 175 (647)
.+.++++....+..+.. ..+...++++. .+.||+.-.. .+.|+++++... ....+...+
T Consensus 405 ~Ir~i~l~~~~~~~l~~----~~~~~~gl~~d~~~~~lY~sD~~-----------~~~I~~~~l~g~~~~~~~~~vi~~~ 469 (791)
T 3m0c_C 405 EVRKMTLDRSEYTSLIP----NLRNVVALDTEVASNRIYWSDLS-----------QRMICSTQLDRAHGVSSYDTVISRD 469 (791)
T ss_dssp SEEEECTTSCCCEEEEC----SCSSEEEEEEETTTTEEEEEETT-----------TTEEEEEEC--------CEEEECSS
T ss_pred ceeEeeccCCcceeeec----CCCceEEEeecccCCeeEEeecc-----------ceeEEEEeccCCCCCcceeEEEecC
Confidence 56667777666665543 22333444444 5889998542 245788887642 233332212
Q ss_pred CCCCcceeEEEE--ECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe--CCEEEEE
Q 006384 176 CPSPRSGHRMVL--YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLY 251 (647)
Q Consensus 176 ~P~~R~~h~~~~--~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~ 251 (647)
+..| .++++ .++.||+.-.. .+.|+++++....-..+... ....|+ ++++. .+.||+.
T Consensus 470 l~~P---~GLAvD~~~~~LY~tD~~---------~~~I~v~~ldG~~~~~l~~~---~l~~P~---gIaVDp~~g~LYwt 531 (791)
T 3m0c_C 470 IQAP---DGLAVDWIHSNIYWTDSV---------LGTVSVADTKGVKRKTLFRE---NGSKPR---AIVVDPVHGFMYWT 531 (791)
T ss_dssp CSCC---CEEEEETTTTEEEEEETT---------TTEEEEEETTSSSEEEEEEC---TTCCEE---EEEEETTTTEEEEE
T ss_pred CCCc---ceeeeeecCCcEEEEecC---------CCeEEEEeCCCCeEEEEEeC---CCCCcc---eEEEecCCCCEEEe
Confidence 2222 22333 36799987432 35789999886655544322 112232 34443 6889987
Q ss_pred ecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE--CCeEEEecceeccccCcccccccc
Q 006384 252 GGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLF 329 (647)
Q Consensus 252 GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~--~~~iyifGG~~~~~~~~~~~~~~~ 329 (647)
--.. ...|+++++....-..+...+ ...-.++++- +++||+.-..
T Consensus 532 D~g~---------------~~~I~~~~~dG~~~~~lv~~~----l~~P~GLavD~~~~~LYwaD~~-------------- 578 (791)
T 3m0c_C 532 DWGT---------------PAKIKKGGLNGVDIYSLVTEN----IQWPNGITLDLLSGRLYWVDSK-------------- 578 (791)
T ss_dssp ECSS---------------SCEEEEEETTSCCEEEEECSS----CSCEEEEEEETTTTEEEEEETT--------------
T ss_pred cCCC---------------CCeEEEEecCCCceEEEEeCC----CCCceEEEEecCCCeEEEEeCC--------------
Confidence 5211 134888888765444443211 1122334443 6888887321
Q ss_pred CCcEEEEECCCC
Q 006384 330 LNELYGFQLDNH 341 (647)
Q Consensus 330 ~ndl~~yd~~t~ 341 (647)
.+.|+++++...
T Consensus 579 ~~~I~~~d~dG~ 590 (791)
T 3m0c_C 579 LHSISSIDVNGG 590 (791)
T ss_dssp TTEEEEEETTSC
T ss_pred CCcEEEEecCCC
Confidence 356888888653
No 301
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=37.44 E-value=56 Score=36.40 Aligned_cols=62 Identities=16% Similarity=0.265 Sum_probs=36.2
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEE-----EcccCCCCCCcceeEEEEEC--CEEEEEecccCCCCcee
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWE-----QLNLKGCPSPRSGHRMVLYK--HKIIVFGGFYDTLREVR 206 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~-----~~~~~~~P~~R~~h~~~~~~--~~lyv~GG~~~~~~~~~ 206 (647)
++++|+|-| +.+|+||..+++-. .+...-+..+..-.++..+. +++|+|-|.
T Consensus 548 ~gktYFFkG-------------~~ywryd~~~~~vd~gYPk~i~~~w~G~p~~iDAAf~~~~~g~~YFFkG~-------- 606 (631)
T 1ck7_A 548 NKKTYIFAG-------------DKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGA-------- 606 (631)
T ss_dssp TCEEEEEET-------------TEEEEEETTTTEECTTCCEETTTSCSSCCTTCCEEECCTTSCBCEEEETT--------
T ss_pred CCeEEEEEC-------------CEEEEEcCCcccccCCCCcchHhhcCCCCCCCcEeEEEcCCCeEEEEECC--------
Confidence 589999987 57899998765321 12110011122233444444 799999873
Q ss_pred eeCcEEEEEcCCC
Q 006384 207 YYNDLYVFDLDQF 219 (647)
Q Consensus 207 ~~~dv~~yD~~t~ 219 (647)
..|+||..+.
T Consensus 607 ---~Ywr~d~~~~ 616 (631)
T 1ck7_A 607 ---YYLKLENQSL 616 (631)
T ss_dssp ---EEECCBTTBT
T ss_pred ---EEEEEeCccc
Confidence 4577776543
No 302
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=37.06 E-value=1.8e+02 Score=32.54 Aligned_cols=139 Identities=14% Similarity=0.091 Sum_probs=72.2
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEE--ECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCC
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVS--WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~--~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~ 178 (647)
+.|+++++....-+.+.......|+ .+++ .++.||+.--. ....|+++++....-..+....+.
T Consensus 475 ~~I~v~d~dg~~~~~l~~~~~~~P~---giavDp~~g~ly~td~~----------~~~~I~~~~~dG~~~~~l~~~~l~- 540 (699)
T 1n7d_A 475 GTVSVADTKGVKRKTLFREQGSKPR---AIVVDPVHGFMYWTDWG----------TPAKIKKGGLNGVDIYSLVTENIQ- 540 (699)
T ss_dssp SCEEEEBSSSCCEEEECCCSSCCCC---CEECCSSSSCCEECCCS----------SSCCEEBCCSSSCCCCEESCSSCS-
T ss_pred CeEEEEecCCCceEEEEeCCCCCcc---eEEEccCCCcEEEcccC----------CCCeEEEEeCCCCCeeEEEeCCCC-
Confidence 4577888776655544332222222 2233 25677775411 014577777754433333221111
Q ss_pred CcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccC
Q 006384 179 PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSK 256 (647)
Q Consensus 179 ~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~ 256 (647)
.-.++++- +++||+.-.. .+.|++|++....-..+.... ......+++++..+.||+.-....
T Consensus 541 --~PnGlavd~~~~~LY~aD~~---------~~~I~~~d~dG~~~~~~~~~~----~~~~~P~glavd~~~lywtd~~~~ 605 (699)
T 1n7d_A 541 --WPNGITLDLLSGRLYWVDSK---------LHSISSIDVNGGNRKTILEDE----KRLAHPFSLAVFEDKVFWTDIINE 605 (699)
T ss_dssp --SCCCEEECTTTCCEEEEETT---------TTEEEEECSSSSCCEEECCCS----SSCSSCCCCEEETTEEEEECSTTT
T ss_pred --CccEEEEeccCCEEEEEecC---------CCeEEEEccCCCceEEEEecC----CcCCCceEeEEECCEEEEEeCCCC
Confidence 11234442 5788886432 367899998754444433221 111223456677889998864332
Q ss_pred CCCCcccCCCCCceeeeEEEEeCCCCeE
Q 006384 257 EVSTDKNQSEKGIIHSDLWSLDPRTWEW 284 (647)
Q Consensus 257 ~~~~~~~~~~~~~~~~dv~~yd~~t~~W 284 (647)
.|+++++.+.+-
T Consensus 606 ----------------~V~~~d~~~G~~ 617 (699)
T 1n7d_A 606 ----------------AIFSANRLTGSD 617 (699)
T ss_dssp ----------------CEEEEETTTEEE
T ss_pred ----------------eEEEEEccCCCc
Confidence 388888766543
No 303
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=34.38 E-value=1.2e+02 Score=30.93 Aligned_cols=108 Identities=13% Similarity=0.025 Sum_probs=50.7
Q ss_pred CcEEEEECCCC--cEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCC
Q 006384 156 KDFWMLDLKTN--QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWP 233 (647)
Q Consensus 156 ~dv~~yD~~t~--~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P 233 (647)
..++.+|..++ .|+.-.....|.-.........++.+|++..+. -..|+.||..++.|..-...+....-
T Consensus 20 G~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~--------dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 20 GGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFG--------DGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp SCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCST--------TTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred CeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECC--------CCEEEEEECCCCcEEeeeccccceec
Confidence 45788888776 477543310111100000111245666664321 14578888877655432111000001
Q ss_pred CCceeeeEEEe-------CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCC--eEEEe
Q 006384 234 SPRSGFQFFVY-------QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKV 287 (647)
Q Consensus 234 ~~R~~~s~~~~-------~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~v 287 (647)
.|..+.+..++ .+..+++|+..+. ++.+|+.+. .|+.-
T Consensus 92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~----------------l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 92 SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTI----------------MYTINMLNGEIISAFG 138 (339)
T ss_dssp CSEEEECC----------CCEEEEECEEEEE----------------EEEEETTTCCEEEEES
T ss_pred cccccCCCceeecccccccCCEEEEEecCCE----------------EEEEECCCCcEEEEEe
Confidence 12222222233 5666667776654 889998765 46553
No 304
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=33.56 E-value=4.4e+02 Score=27.60 Aligned_cols=130 Identities=15% Similarity=0.114 Sum_probs=70.8
Q ss_pred EEeccCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEE---EECCCC-eEEEecCCCCCCCcceeEEEE
Q 006384 57 VHVEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYR---YDVEKQ-EWKVISSPNSPPPRSAHQAVS 132 (647)
Q Consensus 57 ~~~~~~~~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~---yd~~~~-~W~~l~s~~~P~~R~~ha~v~ 132 (647)
|...+++..|..-.-|+++.+ ++.-|.+|=...+-... -..-+|+ |+.-.. .=+.+++- .-..-+.-++-.
T Consensus 272 W~~t~L~~i~~vTe~HSFa~i---~~~~fa~GyHnGDv~PR-e~G~~yfs~~~~sp~~~vrr~i~se-y~~~AsEPCvky 346 (670)
T 3ju4_A 272 WRKTDLGLIPSVTEVHSFATI---DNNGFAMGYHQGDVAPR-EVGLFYFPDAFNSPSNYVRRQIPSE-YEPDASEPCIKY 346 (670)
T ss_dssp CEEEECCSCTTCSEEEEEEEC---SSSCEEEEEEECSSSSC-EEEEEEETTTTTCTTCCEEEECCGG-GCTTEEEEEEEE
T ss_pred ceecccccccceeeeeeeeEe---cCCceEEEeccCCCCcc-eeeEEEecccccCCcceeeeechhh-hccccccchhhh
Confidence 334466777777788999999 56666777532222211 1112221 111111 22333332 111223345556
Q ss_pred ECCEEEEEe-CCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecc
Q 006384 133 WKNYLYIFG-GEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGF 198 (647)
Q Consensus 133 ~~~~iyv~G-G~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~ 198 (647)
+++.||++- |...... =..+.+-+..-..|+.+..+ ........-.+.+++.||+||--
T Consensus 347 YdgvLyLtTRgt~~~~~------GS~L~rs~d~Gq~w~slrfp-~nvHhtnlPFakvgD~l~mFgsE 406 (670)
T 3ju4_A 347 YDGVLYLITRGTRGDRL------GSSLHRSRDIGQTWESLRFP-HNVHHTTLPFAKVGDDLIMFGSE 406 (670)
T ss_dssp ETTEEEEEEEESCTTSC------CCEEEEESSTTSSCEEEECT-TCCCSSCCCEEEETTEEEEEEEC
T ss_pred hCCEEEEEecCcCCCCC------cceeeeecccCCchhheecc-ccccccCCCcceeCCEEEEEecc
Confidence 799999985 3322221 25566777777899998752 12223333457789999999864
No 305
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=33.21 E-value=3.6e+02 Score=26.50 Aligned_cols=60 Identities=18% Similarity=0.115 Sum_probs=32.0
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEE
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYV 213 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~ 213 (647)
.+.+.+.||.. ..+.+||..+++-...-. .+.+ -.++....+.+++.. -+.+.+
T Consensus 70 ~~~~~~~~~~d-----------~~v~iWd~~~~~~~~~~~--~~~~--v~~v~~~~~~~~~~~-----------~~~i~i 123 (355)
T 3vu4_A 70 TNYVAFVTGVK-----------EVVHIWDDVKKQDVSRIK--VDAP--VKDLFLSREFIVVSY-----------GDVISV 123 (355)
T ss_dssp SSEEEEECSST-----------TEEEEEETTTTEEEEEEE--CSSC--EEEEEECSSEEEEEE-----------TTEEEE
T ss_pred CCEEEEEECCc-----------cEEEEEECCCCcEEEEEE--CCCc--eEEEEEcCCEEEEEE-----------cCEEEE
Confidence 45666777632 368889998876433221 1221 122233344554432 145888
Q ss_pred EEcCCC
Q 006384 214 FDLDQF 219 (647)
Q Consensus 214 yD~~t~ 219 (647)
||+.+.
T Consensus 124 ~d~~~~ 129 (355)
T 3vu4_A 124 FKFGNP 129 (355)
T ss_dssp EESSTT
T ss_pred EECCCC
Confidence 888765
No 306
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}
Probab=33.08 E-value=15 Score=34.98 Aligned_cols=8 Identities=25% Similarity=0.929 Sum_probs=5.1
Q ss_pred hhccccCC
Q 006384 506 EWVEASEG 513 (647)
Q Consensus 506 ~w~~~~~~ 513 (647)
+||...++
T Consensus 149 ~WL~EAEE 156 (208)
T 2iu1_A 149 KWLKEAEE 156 (208)
T ss_dssp HHHHCSSC
T ss_pred HHHHcccc
Confidence 59876443
No 307
>1ofz_A Fucose-specific lectin; sugar-binding protein, AAL, aleuria aurantia lectin; HET: FUL FUC; 1.5A {Aleuria aurantia} SCOP: b.68.8.1 PDB: 1iuc_A* 1iub_A*
Probab=32.80 E-value=3.8e+02 Score=26.68 Aligned_cols=118 Identities=16% Similarity=0.160 Sum_probs=62.3
Q ss_pred EEEecCCCCCCCcceeEEEEEC-CEEEEEeCCcCCCCCccccccCcEE--EEECCCCcEEEcccCCCCCCcceeEEEEEC
Q 006384 113 WKVISSPNSPPPRSAHQAVSWK-NYLYIFGGEFTSPNQERFHHYKDFW--MLDLKTNQWEQLNLKGCPSPRSGHRMVLYK 189 (647)
Q Consensus 113 W~~l~s~~~P~~R~~ha~v~~~-~~iyv~GG~~~~~~~~~~~~~~dv~--~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~ 189 (647)
|..-.....+.+++..+++... ++|-||--.. -+.++ +||. ..|..........++...+++.++
T Consensus 153 W~~~~~lg~~~~gT~laa~s~~~~~i~vf~q~~----------dn~i~~~~~d~--~~W~~~~~~~~~~p~s~lAavs~~ 220 (312)
T 1ofz_A 153 WTAGASFGSTAPGTGIGATAIGPGRLRIYYQAT----------DNKIREHCWDS--NSWYVGGFSASASAGVSIAAISWG 220 (312)
T ss_dssp EEEEEEEEEESTTCCEEEEEEETTEEEEEEEBT----------TSEEEEEEESS--SCEEEEEEEEECCTTCEEEEEEET
T ss_pred cccCCCcCCccCCCCcceeecCCCCEEEEEEcC----------CCcEEEEEecC--CcceECCEecCcCCCCCcEEEEeC
Confidence 8855432223566777777764 7877775311 13443 4554 568766553224577777788774
Q ss_pred -C-EEEEEecccCCCCceeeeCcEEEEEcCCCceE---EeccCCCCCCCCCceeeeEEEeCC-EEEEE
Q 006384 190 -H-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ---EIKPRFGSMWPSPRSGFQFFVYQD-EVFLY 251 (647)
Q Consensus 190 -~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~---~v~~~~~~~~P~~R~~~s~~~~~~-~Iyv~ 251 (647)
+ +|-||---. -+.|+.+--. ..|+ +|..........+++..+++..++ .|.||
T Consensus 221 ~~~~i~lf~~~~--------~n~i~~~~~~-~~W~~~~~~~d~~~~~~~~~~s~~aa~s~~~~~i~lf 279 (312)
T 1ofz_A 221 STPNIRVYWQKG--------REELYEAAYG-GSWNTPGQIKDASRPTPSLPDTFIAANSSGNIDISVF 279 (312)
T ss_dssp TTTEEEEEEECT--------TSCEEEEEES-SSBCCCEEECCTTSCSCBCTTCCCEEEEETTTEEEEE
T ss_pred CCCEEEEEEECC--------CCcEEEEEec-CCccccccccCcccccCcCCCCceEEEecCCCeEEEE
Confidence 4 665553211 1344444333 4587 443221112244666666666643 55554
No 308
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=31.89 E-value=5.9e+02 Score=30.18 Aligned_cols=160 Identities=13% Similarity=0.080 Sum_probs=82.0
Q ss_pred CCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCC---CCCCCcceeEEEEE---CCEEEEEe
Q 006384 68 PRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSP---NSPPPRSAHQAVSW---KNYLYIFG 141 (647)
Q Consensus 68 ~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~---~~P~~R~~ha~v~~---~~~iyv~G 141 (647)
.-.+++.... .+.+ |+|.-.. ......++.|......|-..... .......++++++- +...||+|
T Consensus 333 ~q~GfSa~~t---~d~~-~~GapG~----~~w~G~v~~~~~~~~~~~~~~~~~~~~~~~sylGySVa~~~~~g~~~~v~G 404 (1095)
T 3k6s_A 333 AQEGFSAVFT---PDGP-VLGAVGS----FTWSGGAFLYPPNMSPTFINMSQENVDMRDSYLGYSTELALWKGVQSLVLG 404 (1095)
T ss_dssp CCTTSSEECC---TTCC-EEEESCS----TTTTBEEEECCSSSCCEEECCCSSCCCCCSCCBTSSEECCCCSSSCEEEEE
T ss_pred ccccccceec---CCcc-eEccccc----CCccceeEEecCCCcceeeccccccccccccccceeeEEeccCCceEEEEE
Confidence 3456666665 3334 6775311 11223567777665544322211 11223345665542 33456776
Q ss_pred CCcCCCCCccccccCcEEEEECCCCcEEEccc-CCC-CCCcceeEEEEEC------CEEEEEecccCCCCceeeeCcEEE
Q 006384 142 GEFTSPNQERFHHYKDFWMLDLKTNQWEQLNL-KGC-PSPRSGHRMVLYK------HKIIVFGGFYDTLREVRYYNDLYV 213 (647)
Q Consensus 142 G~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~-~~~-P~~R~~h~~~~~~------~~lyv~GG~~~~~~~~~~~~dv~~ 213 (647)
--. ..+...|++|......|..... .+. .....++++++.+ .-||++|.-..... .....+|+
T Consensus 405 AP~-------~~~~G~V~i~~~~~~~~~~~~~~~g~~~gs~fG~sva~~DvngDG~~DllvvGAP~~~~~--~~~G~Vyv 475 (1095)
T 3k6s_A 405 APR-------YQHTGKAVIFTQVSRQWRMKAEVTGTQIGSYFGASLCSVDVDSDGSTDLVLIGAPHYYEQ--TRGGQVSV 475 (1095)
T ss_dssp ETT-------GGGTCEEEEEECCTTTCCEEEEECCSSTTSCTTSCEEEECSSSSSSCCEEEEECSSCCSS--CCCBCEEE
T ss_pred ccc-------ccccceEEEEEecCCcceEEeecccCcccCcCCceEEEEEeCCCCCccEEEECCccccCc--CCCCEEEE
Confidence 321 1235679999888778877543 122 3345667776642 24667774322111 12356888
Q ss_pred EEcCC--CceEEeccCCCCC-CCCCceeeeEEEe
Q 006384 214 FDLDQ--FKWQEIKPRFGSM-WPSPRSGFQFFVY 244 (647)
Q Consensus 214 yD~~t--~~W~~v~~~~~~~-~P~~R~~~s~~~~ 244 (647)
|.... ..|.......... .+..|+|++++.+
T Consensus 476 y~~~~~~~~~~~~~~l~g~~~~~~~~FG~sva~~ 509 (1095)
T 3k6s_A 476 CPLPRGWRRWWCDAVLYGEQGHPWGRFGAALTVL 509 (1095)
T ss_dssp EECCSSTTCCCSCSSCCCCCSCSSCCBTSCEEEE
T ss_pred EEeCCCCcceeeeEEeecccCCccccCccceEee
Confidence 75433 4587543332211 1457888888875
No 309
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=31.86 E-value=1.8e+02 Score=32.40 Aligned_cols=70 Identities=9% Similarity=0.063 Sum_probs=36.8
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcce--e--EEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEecc
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSG--H--RMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~--h--~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~ 226 (647)
..+++||+.++.-..+-.. ....... . -...-+++.++++..........+..++|+||+.+.+...+..
T Consensus 36 ~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~ 109 (740)
T 4a5s_A 36 NNILVFNAEYGNSSVFLEN-STFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEER 109 (740)
T ss_dssp TEEEEEETTTCCEEEEECT-TTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC
T ss_pred CcEEEEECCCCceEEEEec-hhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEccc
Confidence 3688999998875554221 1111111 1 1112255555555432222112245789999999987665543
No 310
>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A {Saccharomyces cerevisiae}
Probab=31.74 E-value=9.8 Score=42.99 Aligned_cols=8 Identities=25% Similarity=0.052 Sum_probs=4.2
Q ss_pred ceEEeccC
Q 006384 220 KWQEIKPR 227 (647)
Q Consensus 220 ~W~~v~~~ 227 (647)
.|..++..
T Consensus 317 ~w~~lPii 324 (956)
T 4aco_A 317 LLQDIPIL 324 (956)
T ss_dssp TGGGSBSS
T ss_pred hHhhCcee
Confidence 46655544
No 311
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=31.63 E-value=6.1e+02 Score=28.63 Aligned_cols=188 Identities=14% Similarity=0.268 Sum_probs=89.8
Q ss_pred CcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCC-C---CCc-ceeEEEEE---CCEEEEE
Q 006384 69 RSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNS-P---PPR-SAHQAVSW---KNYLYIF 140 (647)
Q Consensus 69 R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~-P---~~R-~~ha~v~~---~~~iyv~ 140 (647)
+.-+++++.|.+.+.||+..|...... ...||+=.=.-.+|+.+..+.. + ..| ..+.+++. .+.||+
T Consensus 64 ~~i~~ia~dp~~~~~i~~~~g~~~~~~----~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~- 138 (789)
T 1sqj_A 64 MGTESIALDPNNPDRLYLAQGRYVGDE----WAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWM- 138 (789)
T ss_dssp CSEEEEEEETTEEEEEEEEECSCTTSS----CCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEE-
T ss_pred CceeEEEECCCCCCEEEEEeCccCCCc----ccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEE-
Confidence 445667777643467888776411000 1345543334568998864311 0 123 23445554 345666
Q ss_pred eCCcCCCCCccccccCcEEEEECCCCcEEEcccCCC-CCCcceeEEEEE----CCEEEEEecccCCCCceeeeCcEEEEE
Q 006384 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLY----KHKIIVFGGFYDTLREVRYYNDLYVFD 215 (647)
Q Consensus 141 GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~-P~~R~~h~~~~~----~~~lyv~GG~~~~~~~~~~~~dv~~yD 215 (647)
|... ..+|+=+=.-.+|+.+..... ...-.+...+.+ .+.||+..... ..+++=.
T Consensus 139 g~~~-----------~gl~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~---------~~v~~S~ 198 (789)
T 1sqj_A 139 GTRT-----------EGIWKSSDRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATAP---------QGMYVTH 198 (789)
T ss_dssp ECSS-----------SCEEEESSTTSSCEEETTSCCCCSTTTCEEEEEECTTSTTCEEEEESST---------TCEEEES
T ss_pred Eecc-----------CCEEEECCCCcccCCCccCccccCCCCCeEEEEECCCCCCEEEEEEcCC---------CeEEEEc
Confidence 3321 234443333468999875210 011122233333 24677654310 1233211
Q ss_pred cCCCceEEeccCCCCC-------CC----CCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCC
Q 006384 216 LDQFKWQEIKPRFGSM-------WP----SPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW 282 (647)
Q Consensus 216 ~~t~~W~~v~~~~~~~-------~P----~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~ 282 (647)
=.-.+|+.+...+.+. +| .....|.+++. .+.||+..+..... .......|++.+-...
T Consensus 199 DgG~TW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~p--------~~g~~g~l~~S~DgG~ 270 (789)
T 1sqj_A 199 DGGVSWEPVAGQPSSWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVTYADYPGP--------WGVTFGEVWRQNRTSG 270 (789)
T ss_dssp STTSSCEECTTCCCSCCHHHHHTSTTCCCSSSSCEEEEEEECSSEEEEEEESSCSS--------SCCCCCCEEEEETTTC
T ss_pred CCCcCcccCCCCcCccccccccccCcccccccccceeEEcCCCCeEEEEEecCCCC--------CCCCCceEEEEeCCCC
Confidence 1245799987442221 11 11111444433 78888875321110 0012335788888888
Q ss_pred eEEEeec
Q 006384 283 EWSKVKK 289 (647)
Q Consensus 283 ~W~~v~~ 289 (647)
+|+.+..
T Consensus 271 tW~~~~~ 277 (789)
T 1sqj_A 271 AWDDITP 277 (789)
T ss_dssp CEEECCC
T ss_pred ceEECcC
Confidence 9999865
No 312
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=31.47 E-value=5.5e+02 Score=28.09 Aligned_cols=65 Identities=14% Similarity=0.075 Sum_probs=38.4
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCC-CCcceeEEEEE-CCEEEEEecccCCCCceeeeCcE
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCP-SPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDL 211 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P-~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv 211 (647)
++..+..++.. ..|.+||..+ .+..+. ..++ ..+..|+++.- ++++++.||.+ ..+
T Consensus 96 dG~~LAs~s~d-----------g~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~D---------GtV 153 (588)
T 2j04_A 96 IDDWMAVLSNN-----------GNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNED---------GEL 153 (588)
T ss_dssp SSSCEEEEETT-----------SCEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETT---------SEE
T ss_pred CCCEEEEEeCC-----------CcEEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCC---------CEE
Confidence 56666666543 3477788544 555554 2233 23445544443 67888888863 457
Q ss_pred EEEEcCCCc
Q 006384 212 YVFDLDQFK 220 (647)
Q Consensus 212 ~~yD~~t~~ 220 (647)
.+||+.+..
T Consensus 154 kIWd~~~~~ 162 (588)
T 2j04_A 154 QFFSIRKNS 162 (588)
T ss_dssp EEEECCCCT
T ss_pred EEEECCCCc
Confidence 888887763
No 313
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=31.08 E-value=5.6e+02 Score=28.68 Aligned_cols=153 Identities=14% Similarity=0.112 Sum_probs=79.6
Q ss_pred CcEEEEECCC--CcEEEcccCCCCCCcceeEEEEECCEEEEEecccCC-CCceeeeCcEEEEEcCC--------CceEE-
Q 006384 156 KDFWMLDLKT--NQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDT-LREVRYYNDLYVFDLDQ--------FKWQE- 223 (647)
Q Consensus 156 ~dv~~yD~~t--~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~-~~~~~~~~dv~~yD~~t--------~~W~~- 223 (647)
+.+|..+... ..|..+.. |. ... -....++.+|+.....-. ....-....|..+|+.+ ..|+.
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~---~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 343 (711)
T 4hvt_A 269 YDNYILDTKYKNLKLQKINM---PS-DAT-LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKIL 343 (711)
T ss_dssp EEEEEEECSSSSCEEEECCS---CT-TCE-EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEE
T ss_pred eeEEEEcCCCCCCcceEeec---CC-cce-EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEE
Confidence 5677777653 56777633 32 222 234668999997643200 00011245788888765 36887
Q ss_pred eccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEE
Q 006384 224 IKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMC 303 (647)
Q Consensus 224 v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~ 303 (647)
+++. ..+.-..+...++.||+..-.. ....++++++.+..|...... ..|.. ...+..
T Consensus 344 ~~~~------~~~~l~~~~~~~~~l~~~~~~~--------------~~~~l~~~~~~~g~~~~~~~i-~lp~~-~~~~~~ 401 (711)
T 4hvt_A 344 FTPT------ANEVFNFISTTKDRVFLATYDN--------------VVAKVVTFTLENEQWTKPVVL-KLPYQ-NAIFGM 401 (711)
T ss_dssp ECCC------TTEEEEEEEECSSCEEEEEEET--------------TEEEEEEECEETTEECCCEEE-CCCST-TCEEEE
T ss_pred ECCC------CCCeEEEEEEECCEEEEEEEEC--------------CEEEEEEEECCCCceEEEecc-CCCCC-eEEEEE
Confidence 4332 2233334555577777654322 224588898887877432201 11221 111111
Q ss_pred E--EC-CeEEE-ecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 304 V--HK-KRALL-FGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 304 ~--~~-~~iyi-fGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
. .+ +.+++ +.+. ..-..+|.||+. ..+..+..
T Consensus 402 ~~~~~~~~~~~~~ss~------------~~P~~~~~~d~~-~~~~~l~~ 437 (711)
T 4hvt_A 402 SSYEEEEEALITIENS------------IVPPTIYLWVKT-HELKIIRK 437 (711)
T ss_dssp ECCTTCSCEEEEEECS------------SSCCEEEEECTT-SCEEEEEC
T ss_pred eecCcCCEEEEEEecC------------CCCCEEEEEeCC-CcEEEEec
Confidence 1 12 33333 3332 224679999987 77776654
No 314
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=30.92 E-value=5.6e+02 Score=28.05 Aligned_cols=195 Identities=9% Similarity=-0.004 Sum_probs=109.6
Q ss_pred CcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEE--ECCEEEEEeCCcCC
Q 006384 69 RSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVS--WKNYLYIFGGEFTS 146 (647)
Q Consensus 69 R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~--~~~~iyv~GG~~~~ 146 (647)
+...++.+.+. ++.||+.--. .+.++++++.......+..... ..-..+++ .++.||+.-..
T Consensus 37 ~~~~~l~~d~~-~~~lywtD~~---------~~~I~r~~~~g~~~~~v~~~g~---~~P~GlAvD~~~~~LY~tD~~--- 100 (628)
T 4a0p_A 37 KEASALDFDVT-DNRIYWTDIS---------LKTISRAFMNGSALEHVVEFGL---DYPEGMAVDWLGKNLYWADTG--- 100 (628)
T ss_dssp SCEEEEEEETT-TTEEEEEETT---------TTEEEEEETTSCSCEEEECSSC---SCCCEEEEETTTTEEEEEETT---
T ss_pred CceEEEEEECC-CCEEEEEECC---------CCeEEEEECCCCCcEEEEeCCC---CCcceEEEEeCCCEEEEEECC---
Confidence 34556666654 5889887651 2478899988766655543221 11223344 36899997432
Q ss_pred CCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEe-cccCCCCceeeeCcEEEEEcCCCceEE
Q 006384 147 PNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFG-GFYDTLREVRYYNDLYVFDLDQFKWQE 223 (647)
Q Consensus 147 ~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~G-G~~~~~~~~~~~~dv~~yD~~t~~W~~ 223 (647)
.+.|+++++....-..+....+..|| ..++- ++.||+.- |. ...|+++++....-+.
T Consensus 101 --------~~~I~v~~~dG~~~~~l~~~~l~~P~---~iavdp~~G~lY~tD~g~---------~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 101 --------TNRIEVSKLDGQHRQVLVWKDLDSPR---ALALDPAEGFMYWTEWGG---------KPKIDRAAMDGSERTT 160 (628)
T ss_dssp --------TTEEEEEETTSTTCEEEECSSCCCEE---EEEEETTTTEEEEEECSS---------SCEEEEEETTSCSCEE
T ss_pred --------CCEEEEEecCCCcEEEEEeCCCCCcc---cEEEccCCCeEEEeCCCC---------CCEEEEEeCCCCceEE
Confidence 25789999876543333322233332 34444 67899864 21 3578888887655544
Q ss_pred eccCCCCCCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeE
Q 006384 224 IKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFS 301 (647)
Q Consensus 224 v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s 301 (647)
+... ...| .++++- ++.||+.-... +.|+++++....=+.+... .+ ..++
T Consensus 161 l~~~----~~~P---~GlalD~~~~~LY~aD~~~----------------~~I~~~d~dG~~~~v~~~~--l~---~P~g 212 (628)
T 4a0p_A 161 LVPN----VGRA---NGLTIDYAKRRLYWTDLDT----------------NLIESSNMLGLNREVIADD--LP---HPFG 212 (628)
T ss_dssp EECS----CSSE---EEEEEETTTTEEEEEETTT----------------TEEEEEETTSCSCEEEEEC--CS---CEEE
T ss_pred EECC----CCCc---ceEEEccccCEEEEEECCC----------------CEEEEEcCCCCceEEeecc--CC---CceE
Confidence 4321 1112 223333 68899876433 3488888754322333221 12 2357
Q ss_pred EEEECCeEEEecceeccccCccccccccCCcEEEEECCCC
Q 006384 302 MCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (647)
Q Consensus 302 ~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (647)
+++.++.||+.--. .+.|+++|..+.
T Consensus 213 lav~~~~ly~tD~~--------------~~~I~~~dk~tg 238 (628)
T 4a0p_A 213 LTQYQDYIYWTDWS--------------RRSIERANKTSG 238 (628)
T ss_dssp EEEETTEEEEEETT--------------TTEEEEEETTTC
T ss_pred EEEECCEEEEecCC--------------CCEEEEEECCCC
Confidence 77788888887421 345777776443
No 315
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=30.61 E-value=5.7e+02 Score=27.98 Aligned_cols=182 Identities=13% Similarity=0.123 Sum_probs=89.8
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCC-CcceeEEEEE-CCEEEEEeCCcCCCCCc
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPP-PRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~-~R~~ha~v~~-~~~iyv~GG~~~~~~~~ 150 (647)
++...| ++..+..++. + ..+..|+... .+..+. ...|. .+..++++.- ++++++.||..
T Consensus 90 ~vawSP--dG~~LAs~s~--d-------g~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~D------ 150 (588)
T 2j04_A 90 VCKPSP--IDDWMAVLSN--N-------GNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNED------ 150 (588)
T ss_dssp EEEECS--SSSCEEEEET--T-------SCEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETT------
T ss_pred EEEECC--CCCEEEEEeC--C-------CcEEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCC------
Confidence 334444 6776766662 2 3567777443 555554 33332 2445544443 57777777753
Q ss_pred cccccCcEEEEECCCCc--------EEEcccCC-CCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc-
Q 006384 151 RFHHYKDFWMLDLKTNQ--------WEQLNLKG-CPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK- 220 (647)
Q Consensus 151 ~~~~~~dv~~yD~~t~~--------W~~~~~~~-~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~- 220 (647)
..+-+||+.++. ...+.... ..... -.+.+...+. ++.+|.+ +.+..+|+.++.
T Consensus 151 -----GtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~-V~sVawSPdg-Laass~D---------~tVrlWd~~~~~~ 214 (588)
T 2j04_A 151 -----GELQFFSIRKNSENTPEFYFESSIRLSDAGSKDW-VTHIVWYEDV-LVAALSN---------NSVFSMTVSASSH 214 (588)
T ss_dssp -----SEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCC-EEEEEEETTE-EEEEETT---------CCEEEECCCSSSS
T ss_pred -----CEEEEEECCCCccccccceeeeeeeccccccccc-EEEEEEcCCc-EEEEeCC---------CeEEEEECCCCcc
Confidence 457788888763 22222100 01111 1223333455 5666642 568888887655
Q ss_pred ---eEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCc
Q 006384 221 ---WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPR 297 (647)
Q Consensus 221 ---W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R 297 (647)
|+.+... ....-.+++.. +.+++.++. + .+..||+.+..-..... |. .-
T Consensus 215 ~~~~~tL~~~------h~~~V~svaFs-g~~LASa~~-~----------------tIkLWd~~~~~~~~~~~-gh---~~ 266 (588)
T 2j04_A 215 QPVSRMIQNA------SRRKITDLKIV-DYKVVLTCP-G----------------YVHKIDLKNYSISSLKT-GS---LE 266 (588)
T ss_dssp CCCEEEEECC------CSSCCCCEEEE-TTEEEEECS-S----------------EEEEEETTTTEEEEEEC-SC---CS
T ss_pred ccceeeeccc------ccCcEEEEEEE-CCEEEEEeC-C----------------eEEEEECCCCeEEEEEc-CC---Cc
Confidence 3344221 11111222223 445555542 3 38889988776644432 21 11
Q ss_pred eeeEEEE--E-CCeEEEecceec
Q 006384 298 AGFSMCV--H-KKRALLFGGVVD 317 (647)
Q Consensus 298 ~~~s~~~--~-~~~iyifGG~~~ 317 (647)
.-..+++ - ++.+++.++.++
T Consensus 267 ~V~~va~~~s~d~~~La~a~edG 289 (588)
T 2j04_A 267 NFHIIPLNHEKESTILLMSNKTS 289 (588)
T ss_dssp CCCEEEETTCSSCEEEEECSSCE
T ss_pred eEEEEEeeeCCCCCEEEEEcCCC
Confidence 1223333 2 456777777544
No 316
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=28.54 E-value=4.9e+02 Score=26.54 Aligned_cols=17 Identities=6% Similarity=0.174 Sum_probs=12.6
Q ss_pred eeeEEEEE-CCeEEEecc
Q 006384 298 AGFSMCVH-KKRALLFGG 314 (647)
Q Consensus 298 ~~~s~~~~-~~~iyifGG 314 (647)
..|++++. ++.+|.+|-
T Consensus 303 ~~ht~alt~~G~v~~wG~ 320 (423)
T 3mvd_K 303 QHHTVILTTDLKCSVVGR 320 (423)
T ss_dssp SSEEEEEETTCCEEEEEC
T ss_pred cCeEEEEeCCCcEEEEEC
Confidence 35777776 688999984
No 317
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=27.57 E-value=6.9e+02 Score=28.00 Aligned_cols=208 Identities=14% Similarity=0.183 Sum_probs=0.0
Q ss_pred EeccCCCCC----------CCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCC-----C
Q 006384 58 HVEDNVPAP----------SPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNS-----P 122 (647)
Q Consensus 58 ~~~~~~~~P----------~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~-----P 122 (647)
+|....... ....-+++++.|.+.+.||+..|.+... .....||+=.=.-.+|+.+..+.. +
T Consensus 54 tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~~~~---~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~ 130 (763)
T 3a0f_A 54 EWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDYVQW---DPWAAFLVSDDRGKTFKQYRSPVPMGANDM 130 (763)
T ss_dssp EEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSCTTT---CSCCEEEEESSTTSSCEEEECSSCCCTTST
T ss_pred CeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEecccccC---CCCceEEEECCCCCCceeccCCcccCcccc
Q ss_pred CCcceeEEEEE---CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-----CCEEEE
Q 006384 123 PPRSAHQAVSW---KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-----KHKIIV 194 (647)
Q Consensus 123 ~~R~~ha~v~~---~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-----~~~lyv 194 (647)
.....+.+++. .+.+|+.+-. .-+|+=.=.-.+|+.+...............+. .+.||+
T Consensus 131 g~~~~~~l~v~p~~~~~v~a~~~~------------~~l~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~ 198 (763)
T 3a0f_A 131 GRNGGERLAVNPHWTDELWFGSRT------------QGLWRSTDRAQTWSRMNQLPDSSTYGIGIISVIFDPKNVGTAYV 198 (763)
T ss_dssp TTTSBCCEEECTTSTTCEEEECSS------------SCEEEESSTTSSCEECTTSCCCSCTTTCEEEEEECSSSTTCEEE
T ss_pred CccccceEEECCCCCCEEEEEeCC------------CcEEEECCCCcCccccccCcccCCCccceEEEEECCCCCCEEEE
Q ss_pred EecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCC--------------------CCceeeeEEEe-CCEEEEE--
Q 006384 195 FGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWP--------------------SPRSGFQFFVY-QDEVFLY-- 251 (647)
Q Consensus 195 ~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P--------------------~~R~~~s~~~~-~~~Iyv~-- 251 (647)
...... .+++=.=.-.+|+.+... | .++..+.+++. ++.||+.
T Consensus 199 ~~~~~g---------~v~~S~DgG~tW~~~~~~-----~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~l~~~~~ 264 (763)
T 3a0f_A 199 ASHAVG---------GLWVTWDGGANWSQVGGQ-----PTQWSDWTKSIVAASGTAIQSSGPLPIKIALGKNGRLYITYS 264 (763)
T ss_dssp EESSTT---------CEEEESSSSSSCEECTTC-----CCSCCHHHHHHHHHHCCCCSSSSCEEEEEEECTTSCEEEEEE
T ss_pred EEeCCC---------eEEEECCCCCCccccCCC-----ccccccccccccccccccccCCCCcceeEEECCCCcEEEEec
Q ss_pred ------ecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCC--Cce------------eeEEEEEC--CeE
Q 006384 252 ------GGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPG--PRA------------GFSMCVHK--KRA 309 (647)
Q Consensus 252 ------GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~--~R~------------~~s~~~~~--~~i 309 (647)
||.... +++.+-...+|+.+.+. |. ..+ ++..+.+. +.|
T Consensus 265 ~~~~~~~~~~g~----------------v~rS~D~G~tW~~~~~~---~~~~~~~~~~~~~~~~~~gg~~~i~v~~~~~v 325 (763)
T 3a0f_A 265 DAPGPWGVLYGE----------------VWSYDPTNGNWKHITPS---REGANTYPAPTGNKKVVPGGWNGISVGNGDTV 325 (763)
T ss_dssp SSCSSSCCCCEE----------------EEEEETTTTEEEECCTT---SSSSCEESCCCCCTTSCCCEEEEEEECSTBCE
T ss_pred cCCCCCCCccee----------------EEEEeCCCCceEECCCC---CCCCccccccccccccccCCceeEEEcCCCeE
Q ss_pred EEec
Q 006384 310 LLFG 313 (647)
Q Consensus 310 yifG 313 (647)
|+.+
T Consensus 326 ~~~~ 329 (763)
T 3a0f_A 326 VVST 329 (763)
T ss_dssp EEEE
T ss_pred EEEe
No 318
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=27.30 E-value=5.3e+02 Score=26.54 Aligned_cols=154 Identities=8% Similarity=0.028 Sum_probs=0.0
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCE-EEEEeCCcCCCCCc
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNY-LYIFGGEFTSPNQE 150 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~-iyv~GG~~~~~~~~ 150 (647)
..+++.|..++.||+.-- + +.+.+||+.++....+.. +..+-.+-++...+. ||+.......
T Consensus 140 ~~lavdp~~~g~Lyv~d~----~------~~I~~id~~~~~v~~~~~---~~~~P~~ia~d~~G~~lyvad~~~~~---- 202 (430)
T 3tc9_A 140 VWLSFDPKNHNHLYLVGE----Q------HPTRLIDFEKEYVSTVYS---GLSKVRTICWTHEADSMIITNDQNNN---- 202 (430)
T ss_dssp CEEEEETTEEEEEEEEEB----T------EEEEEEETTTTEEEEEEC---CCSCEEEEEECTTSSEEEEEECCSCT----
T ss_pred CEEEECCCCCCeEEEEeC----C------CcEEEEECCCCEEEEEec---CCCCcceEEEeCCCCEEEEEeCCCCc----
Q ss_pred cccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCC
Q 006384 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (647)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (647)
......+-.....|..... .+....-+.+++. ++.||+.--. .+.|++|++.+..-..+...
T Consensus 203 ----~~~~v~~~~~~g~~~~~~~--l~~~~~p~giavdp~~g~lyv~d~~---------~~~V~~~~~~~~~~~~~~~~- 266 (430)
T 3tc9_A 203 ----DRPNNYILTRESGFKVITE--LTKGQNCNGAETHPINGELYFNSWN---------AGQVFRYDFTTQETTPLFTI- 266 (430)
T ss_dssp ----TSEEEEEEEGGGTSCSEEE--EEECSSCCCEEECTTTCCEEEEETT---------TTEEEEEETTTTEEEEEEEC-
T ss_pred ----ccceEEEEeCCCceeeeee--eccCCCceEEEEeCCCCEEEEEECC---------CCEEEEEECCCCcEEEEEEc-
Q ss_pred CCCCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEe
Q 006384 229 GSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLD 278 (647)
Q Consensus 229 ~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd 278 (647)
+....-..+++. ++.|||.--.... |++|+
T Consensus 267 ----~~~~~P~gia~~pdG~~lyv~d~~~~~----------------I~~~~ 298 (430)
T 3tc9_A 267 ----QDSGWEFHIQFHPSGNYAYIVVVNQHY----------------ILRSD 298 (430)
T ss_dssp ----SSSSCCEEEEECTTSSEEEEEETTTTE----------------EEEEE
T ss_pred ----CCCCcceeEEEcCCCCEEEEEECCCCE----------------EEEEe
No 319
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=26.94 E-value=6.9e+02 Score=27.80 Aligned_cols=87 Identities=16% Similarity=0.108 Sum_probs=50.5
Q ss_pred CCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEE
Q 006384 165 TNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFV 243 (647)
Q Consensus 165 t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~ 243 (647)
-.+|+.+.. +|.....|.+++. ++.||+..+-............||+++-...+|+.+.+.+... +..+++++.+.
T Consensus 231 G~tW~~~~~--~p~~~~~~~~~~~~~~~l~~~~~d~~g~y~~~~~g~v~~s~d~G~tW~~i~~~~~~~-~~~~~~~~~i~ 307 (737)
T 2cn3_A 231 GVTWKAVPG--QPKGLLPHHGVLASNGMLYITYGDTCGPYDGNGKGQVWKFNTRTGEWIDITPIPYSS-SDNRFCFAGLA 307 (737)
T ss_dssp TSCCEECTT--CCCSSEEEEEEECTTSEEEEEEESSCCSSCCSCCEEEEEEETTTCCEEECCSSCTTS-TTCCSEEEEEE
T ss_pred CCceEECCC--CCCcccceEEEECCCCeEEEEecCCCCccccccCceEEEEeCCCCCEEEccCCCCCC-cccccccccEE
Confidence 457999873 6665555555543 7789887542110000002346889999999999998763211 12345554333
Q ss_pred e----CCEEEEEecc
Q 006384 244 Y----QDEVFLYGGY 254 (647)
Q Consensus 244 ~----~~~Iyv~GG~ 254 (647)
+ .+.||+.+..
T Consensus 308 v~p~~~~~ly~~~~~ 322 (737)
T 2cn3_A 308 VDRQNPDIIMVTSMN 322 (737)
T ss_dssp ECTTCTTCEEEEEEC
T ss_pred EcCCCCCEEEEEecc
Confidence 3 4678877643
No 320
>1ofz_A Fucose-specific lectin; sugar-binding protein, AAL, aleuria aurantia lectin; HET: FUL FUC; 1.5A {Aleuria aurantia} SCOP: b.68.8.1 PDB: 1iuc_A* 1iub_A*
Probab=26.13 E-value=5e+02 Score=25.84 Aligned_cols=171 Identities=13% Similarity=0.168 Sum_probs=86.9
Q ss_pred EEEECCCCeEEEec--CCC-CCCCcceeEEEEEC------CEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccC
Q 006384 104 YRYDVEKQEWKVIS--SPN-SPPPRSAHQAVSWK------NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK 174 (647)
Q Consensus 104 ~~yd~~~~~W~~l~--s~~-~P~~R~~ha~v~~~------~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~ 174 (647)
.+|+. ..|..-. ... .+.+.+.-+++.++ .+|.||.=.... .-+.++.+-.... |..-...
T Consensus 90 ~~~~~--~~W~~g~L~~~~~~~~~~S~lAAvs~~~~~~~~~~i~Vf~q~~~~-------~dn~I~e~~~~g~-W~~~~~l 159 (312)
T 1ofz_A 90 FVYDG--SKWITGQLGSVGVKVGSNSKLAALQWGGSESAPPNIRVYYQKSNL-------SGSSIHEYVWSGK-WTAGASF 159 (312)
T ss_dssp EEEES--SCEEECGGGGGCCBCCTTCCCEEEEESCBTTBCCEEEEEECSCCS-------TTEEEEEEEESSS-EEEEEEE
T ss_pred EEecC--CCccccccCCcccccCCCCcceEEEecCCCCCCCeEEEEEEeccC-------CCCeEEEEEccCC-cccCCCc
Confidence 34665 5798644 211 23456677777775 377777320000 0134433322234 9877664
Q ss_pred CCCCCcceeEEEEEC-CEEEEEecccCCCCceeeeCcEE--EEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CC-EEE
Q 006384 175 GCPSPRSGHRMVLYK-HKIIVFGGFYDTLREVRYYNDLY--VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QD-EVF 249 (647)
Q Consensus 175 ~~P~~R~~h~~~~~~-~~lyv~GG~~~~~~~~~~~~dv~--~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~-~Iy 249 (647)
+...++.+.+++.+. ++|-||--..+ +.|+ .+|. ..|....... ...|+...+++.. ++ .|-
T Consensus 160 g~~~~gT~laa~s~~~~~i~vf~q~~d--------n~i~~~~~d~--~~W~~~~~~~---~~~p~s~lAavs~~~~~~i~ 226 (312)
T 1ofz_A 160 GSTAPGTGIGATAIGPGRLRIYYQATD--------NKIREHCWDS--NSWYVGGFSA---SASAGVSIAAISWGSTPNIR 226 (312)
T ss_dssp EEESTTCCEEEEEEETTEEEEEEEBTT--------SEEEEEEESS--SCEEEEEEEE---ECCTTCEEEEEEETTTTEEE
T ss_pred CCccCCCCcceeecCCCCEEEEEEcCC--------CcEEEEEecC--CcceECCEec---CcCCCCCcEEEEeCCCCEEE
Confidence 335566777777764 78777743221 3343 4444 5687654431 1345666666665 34 665
Q ss_pred EEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEE---EeecCC--CCCCCceeeEEEEECC-eEEEec
Q 006384 250 LYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS---KVKKIG--MPPGPRAGFSMCVHKK-RALLFG 313 (647)
Q Consensus 250 v~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~---~v~~~g--~~P~~R~~~s~~~~~~-~iyifG 313 (647)
||--...+ .+. -..|+ ..|+ .+.... ..+.+++..+++..++ .|.||=
T Consensus 227 lf~~~~~n-----------~i~--~~~~~---~~W~~~~~~~d~~~~~~~~~~s~~aa~s~~~~~i~lf~ 280 (312)
T 1ofz_A 227 VYWQKGRE-----------ELY--EAAYG---GSWNTPGQIKDASRPTPSLPDTFIAANSSGNIDISVFF 280 (312)
T ss_dssp EEEECTTS-----------CEE--EEEES---SSBCCCEEECCTTSCSCBCTTCCCEEEEETTTEEEEEE
T ss_pred EEEECCCC-----------cEE--EEEec---CCccccccccCcccccCcCCCCceEEEecCCCeEEEEE
Confidence 55422111 122 12344 3477 442211 1234666777777754 666663
No 321
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=25.40 E-value=5.5e+02 Score=26.09 Aligned_cols=18 Identities=11% Similarity=0.420 Sum_probs=13.3
Q ss_pred cceEEEEeccCCCEEEEEcC
Q 006384 70 SNCSLNINPLKETELILYGG 89 (647)
Q Consensus 70 ~~~s~~~~~~~~~~lyv~GG 89 (647)
..|++++.. ++.||.+|-
T Consensus 120 ~~hs~alt~--~G~v~~wG~ 137 (413)
T 1a12_A 120 DSHTAALTD--DGRVFLWGS 137 (413)
T ss_dssp SSEEEEEET--TSCEEEEEC
T ss_pred CCeEEEEcC--CCcEEEeeC
Confidence 356776664 689999995
No 322
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=24.56 E-value=7.7e+02 Score=27.51 Aligned_cols=106 Identities=14% Similarity=0.131 Sum_probs=59.1
Q ss_pred CcEEEEECCC--CeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCC--------CcEEE
Q 006384 101 GDLYRYDVEK--QEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT--------NQWEQ 170 (647)
Q Consensus 101 ndl~~yd~~~--~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t--------~~W~~ 170 (647)
+.+|..+... ..|..+.. |. ...+ +...++.+|++....-.... ....-..+..+++.+ ..|+.
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~---~~-~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 342 (711)
T 4hvt_A 269 YDNYILDTKYKNLKLQKINM---PS-DATL-QGSFKEYVFWLLRSDWKFKS-HNIKAGSLVALHFTDLLKTESDKTSLKI 342 (711)
T ss_dssp EEEEEEECSSSSCEEEECCS---CT-TCEE-EEEETTEEEEECSSCEEETT-EEECTTCEEEEEGGGGGSCGGGCTTCEE
T ss_pred eeEEEEcCCCCCCcceEeec---CC-cceE-eeeECCEEEEEECccccccc-ccCCCCeEEEEECCcccccccccccceE
Confidence 5677777653 67877733 22 2222 34568999997643210000 001235688888765 46887
Q ss_pred cccCCCCCC-cceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceE
Q 006384 171 LNLKGCPSP-RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ 222 (647)
Q Consensus 171 ~~~~~~P~~-R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~ 222 (647)
+-. |.. +.-......++.||+..-... ...++++|+.++.|.
T Consensus 343 ~~~---~~~~~~l~~~~~~~~~l~~~~~~~~-------~~~l~~~~~~~g~~~ 385 (711)
T 4hvt_A 343 LFT---PTANEVFNFISTTKDRVFLATYDNV-------VAKVVTFTLENEQWT 385 (711)
T ss_dssp EEC---CCTTEEEEEEEECSSCEEEEEEETT-------EEEEEEECEETTEEC
T ss_pred EEC---CCCCCeEEEEEEECCEEEEEEEECC-------EEEEEEEECCCCceE
Confidence 433 222 233334455777776543221 456889998888774
No 323
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=23.18 E-value=6.2e+02 Score=25.90 Aligned_cols=59 Identities=10% Similarity=-0.022 Sum_probs=32.9
Q ss_pred CEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEE
Q 006384 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLY 212 (647)
Q Consensus 135 ~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~ 212 (647)
+.+++.|+.. ..+.+||+.+..-.. ... + ......++.+ +++.++.|+.+ ..+.
T Consensus 162 ~~~las~s~D-----------g~v~iwD~~~~~~~~-~~~--~-~~~~v~~v~wspdg~~lasgs~d---------g~v~ 217 (434)
T 2oit_A 162 PSMVAVCLAD-----------GSIAVLQVTETVKVC-ATL--P-STVAVTSVCWSPKGKQLAVGKQN---------GTVV 217 (434)
T ss_dssp TTEEEEEETT-----------SCEEEEEESSSEEEE-EEE--C-GGGCEEEEEECTTSSCEEEEETT---------SCEE
T ss_pred CCEEEEEECC-----------CeEEEEEcCCCccee-ecc--C-CCCceeEEEEcCCCCEEEEEcCC---------CcEE
Confidence 5677777643 358888988763211 110 1 1222233333 56666777743 4688
Q ss_pred EEEcC
Q 006384 213 VFDLD 217 (647)
Q Consensus 213 ~yD~~ 217 (647)
+||+.
T Consensus 218 iwd~~ 222 (434)
T 2oit_A 218 QYLPT 222 (434)
T ss_dssp EECTT
T ss_pred EEccC
Confidence 88887
No 324
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=23.13 E-value=5.6e+02 Score=25.36 Aligned_cols=109 Identities=12% Similarity=0.145 Sum_probs=53.2
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCce-EEeccCCCCCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW-QEIKPRFGSMW 232 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W-~~v~~~~~~~~ 232 (647)
+.+++||+.+.+-... .|..... .+++. +.+||+..-...........+.|.+||+.+.+- ..++..+. ..
T Consensus 31 ~~v~v~D~~t~~~~~~----i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~-~~ 104 (361)
T 2oiz_A 31 SRVHVYDYTNGKFLGM----VPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPK-RV 104 (361)
T ss_dssp CEEEEEETTTCCEEEE----EECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTT-BC
T ss_pred CeEEEEECCCCeEEEE----ecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcc-cc
Confidence 5789999888765322 2223222 23333 457888753221110011245789999987653 33332200 00
Q ss_pred CCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEE
Q 006384 233 PSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS 285 (647)
Q Consensus 233 P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~ 285 (647)
.....-+.+++. +..||+..... .+.+.+||+.+.+-.
T Consensus 105 ~~g~~p~~i~~spdg~~l~v~n~~~---------------~~~v~v~d~~~~~~~ 144 (361)
T 2oiz_A 105 QGLNYDGLFRQTTDGKFIVLQNASP---------------ATSIGIVDVAKGDYV 144 (361)
T ss_dssp CBCCCGGGEEECTTSSEEEEEEESS---------------SEEEEEEETTTTEEE
T ss_pred ccCCCcceEEECCCCCEEEEECCCC---------------CCeEEEEECCCCcEE
Confidence 001112334443 45666653210 135888898877543
No 325
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=22.52 E-value=6.3e+02 Score=25.80 Aligned_cols=61 Identities=8% Similarity=-0.026 Sum_probs=33.9
Q ss_pred CEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCC
Q 006384 190 HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKG 268 (647)
Q Consensus 190 ~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~ 268 (647)
+.+++.|+.+ ..+.+||+.+..-.. ... +....-.+++.. ++..++.|+.++.
T Consensus 162 ~~~las~s~D---------g~v~iwD~~~~~~~~-~~~-----~~~~~v~~v~wspdg~~lasgs~dg~----------- 215 (434)
T 2oit_A 162 PSMVAVCLAD---------GSIAVLQVTETVKVC-ATL-----PSTVAVTSVCWSPKGKQLAVGKQNGT----------- 215 (434)
T ss_dssp TTEEEEEETT---------SCEEEEEESSSEEEE-EEE-----CGGGCEEEEEECTTSSCEEEEETTSC-----------
T ss_pred CCEEEEEECC---------CeEEEEEcCCCccee-ecc-----CCCCceeEEEEcCCCCEEEEEcCCCc-----------
Confidence 5677777753 458888988763211 111 111111222222 6677777876655
Q ss_pred ceeeeEEEEeCCC
Q 006384 269 IIHSDLWSLDPRT 281 (647)
Q Consensus 269 ~~~~dv~~yd~~t 281 (647)
+.+||+..
T Consensus 216 -----v~iwd~~~ 223 (434)
T 2oit_A 216 -----VVQYLPTL 223 (434)
T ss_dssp -----EEEECTTC
T ss_pred -----EEEEccCC
Confidence 78888873
No 326
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=21.94 E-value=5.9e+02 Score=25.19 Aligned_cols=174 Identities=9% Similarity=0.026 Sum_probs=97.8
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCC
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~ 178 (647)
+.++++++.......+... .....+++.. ++.||+.--. ...++++++.......+...++..
T Consensus 53 ~~I~~i~~~g~~~~~~~~~----~~~~~~l~~d~~~~~ly~~D~~-----------~~~I~r~~~~g~~~~~~~~~~~~~ 117 (349)
T 3v64_C 53 IDIRQVLPHRSEYTLLLNN----LENAIALDFHHRRELVFWSDVT-----------LDRILRANLNGSNVEEVVSTGLES 117 (349)
T ss_dssp SCEEEECTTSCCEEEEECS----CSCEEEEEEETTTTEEEEEETT-----------TTEEEEEETTSCSCEEEECSSCSC
T ss_pred cceEEEeCCCCeeEEeecC----CCceEEEEEeccccEEEEEecc-----------CCceEEEecCCCCceEEEeCCCCC
Confidence 4688888888777765432 2223444443 5889987431 256899999887666554433222
Q ss_pred CcceeEEEE--ECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe--CCEEEEEecc
Q 006384 179 PRSGHRMVL--YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGY 254 (647)
Q Consensus 179 ~R~~h~~~~--~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~GG~ 254 (647)
| .++++ .++.||+.-.. .+.++++++....-..+... ....| ..+++. ++.||+.-..
T Consensus 118 p---~glavd~~~g~ly~~d~~---------~~~I~~~~~dG~~~~~l~~~---~l~~P---~~iavdp~~g~ly~td~~ 179 (349)
T 3v64_C 118 P---GGLAVDWVHDKLYWTDSG---------TSRIEVANLDGAHRKVLLWQ---SLEKP---RAIALHPMEGTIYWTDWG 179 (349)
T ss_dssp C---CEEEEETTTTEEEEEETT---------TTEEEEEETTSCSCEEEECT---TCSCE---EEEEEETTTTEEEEEECS
T ss_pred c---cEEEEecCCCeEEEEcCC---------CCeEEEEcCCCCceEEEEeC---CCCCc---ceEEEecCcCeEEEeccC
Confidence 2 23333 37899987542 35788898876544433221 11222 234444 6788887532
Q ss_pred cCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE--CCeEEEecceeccccCccccccccCCc
Q 006384 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNE 332 (647)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~--~~~iyifGG~~~~~~~~~~~~~~~~nd 332 (647)
. ...|+++++....-+.+... ....-.++++- +++||+.-.. .+.
T Consensus 180 ~---------------~~~I~r~~~dG~~~~~~~~~----~~~~PnGla~d~~~~~lY~aD~~--------------~~~ 226 (349)
T 3v64_C 180 N---------------TPRIEASSMDGSGRRIIADT----HLFWPNGLTIDYAGRRMYWVDAK--------------HHV 226 (349)
T ss_dssp S---------------SCEEEEEETTSCSCEESCCS----SCSCEEEEEEETTTTEEEEEETT--------------TTE
T ss_pred C---------------CCEEEEEeCCCCCcEEEEEC----CCCCcceEEEeCCCCEEEEEECC--------------CCE
Confidence 2 13488888765433333211 11122345553 6788887421 356
Q ss_pred EEEEECCC
Q 006384 333 LYGFQLDN 340 (647)
Q Consensus 333 l~~yd~~t 340 (647)
|++||++.
T Consensus 227 I~~~~~dG 234 (349)
T 3v64_C 227 IERANLDG 234 (349)
T ss_dssp EEEEETTS
T ss_pred EEEEeCCC
Confidence 88888764
No 327
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=20.55 E-value=7.3e+02 Score=25.77 Aligned_cols=18 Identities=17% Similarity=0.357 Sum_probs=13.4
Q ss_pred cceEEEEeccCCCEEEEEcC
Q 006384 70 SNCSLNINPLKETELILYGG 89 (647)
Q Consensus 70 ~~~s~~~~~~~~~~lyv~GG 89 (647)
..|++++.. ++.||.+|-
T Consensus 76 ~~Ht~alt~--~G~v~~wG~ 93 (473)
T 3of7_A 76 GMHTLALDE--ESNVWSWGC 93 (473)
T ss_dssp SSEEEEEET--TCCEEEEEC
T ss_pred CCeEEEEec--CCeEEEeEC
Confidence 456777664 689999995
No 328
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=20.44 E-value=6.8e+02 Score=25.34 Aligned_cols=175 Identities=8% Similarity=0.062 Sum_probs=93.3
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCC----cEEEcccC
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN----QWEQLNLK 174 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~----~W~~~~~~ 174 (647)
+.+.++++....+..+.. ..+...++++. ++.||+.--. ...|+++++... ....+...
T Consensus 92 ~~I~~i~l~~~~~~~~~~----~~~~~~~l~~d~~~~~lywsD~~-----------~~~I~~~~~~g~~~~~~~~~~~~~ 156 (400)
T 3p5b_L 92 HEVRKMTLDRSEYTSLIP----NLRNVVALDTEVASNRIYWSDLS-----------QRMICSTQLDRAHGVSSYDTVISR 156 (400)
T ss_dssp TEEEEECTTSCSCEEEEC----SCSCEEEEEEETTTTEEEEEETT-----------TTEEEEEEC------CCCEEEECS
T ss_pred ceeEEEccCCcceeEecc----ccCcceEEeeeeccCceEEEecC-----------CCeEEEEEcccCCCCCcceEEEeC
Confidence 467778887776666543 22334455544 5889997432 256888888652 23333221
Q ss_pred CCCCCcceeEEEE--ECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe--CCEEEE
Q 006384 175 GCPSPRSGHRMVL--YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFL 250 (647)
Q Consensus 175 ~~P~~R~~h~~~~--~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~Iyv 250 (647)
++ ..-.++++ .++.||+.-.. .+.|+++++....-..+... ....|+ ++++. ++.||+
T Consensus 157 ~~---~~p~glavD~~~~~lY~~d~~---------~~~I~~~~~~g~~~~~l~~~---~~~~P~---~iavdp~~g~ly~ 218 (400)
T 3p5b_L 157 DI---QAPDGLAVDWIHSNIYWTDSV---------LGTVSVADTKGVKRKTLFRE---NGSKPR---AIVVDPVHGFMYW 218 (400)
T ss_dssp SC---SCEEEEEEETTTTEEEEEETT---------TTEEEEECTTTCSEEEEEEC---SSCCEE---EEEEETTTTEEEE
T ss_pred CC---CCcccEEEEecCCceEEEECC---------CCeEEEEeCCCCceEEEEeC---CCCCcc---eEEEecccCeEEE
Confidence 11 12223343 37899987542 35688888876655444322 112232 34443 678887
Q ss_pred EecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE--CCeEEEecceeccccCccccccc
Q 006384 251 YGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSL 328 (647)
Q Consensus 251 ~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~--~~~iyifGG~~~~~~~~~~~~~~ 328 (647)
.-... ...|+++++....=..+...+ -..-.++++- +++||+.-..
T Consensus 219 td~~~---------------~~~I~~~~~dG~~~~~~~~~~----l~~P~glavd~~~~~lY~aD~~------------- 266 (400)
T 3p5b_L 219 TDWGT---------------PAKIKKGGLNGVDIYSLVTEN----IQWPNGITLDLLSGRLYWVDSK------------- 266 (400)
T ss_dssp EECSS---------------SCCEEEEETTSCSCEEEECSS----CSCEEEEEEETTTTEEEEEETT-------------
T ss_pred EeCCC---------------CCEEEEEeCCCCccEEEEECC----CCceEEEEEEeCCCEEEEEECC-------------
Confidence 64211 124888887654323332111 1122344544 6788887321
Q ss_pred cCCcEEEEECCCC
Q 006384 329 FLNELYGFQLDNH 341 (647)
Q Consensus 329 ~~ndl~~yd~~t~ 341 (647)
.+.|+++|++..
T Consensus 267 -~~~I~~~d~dG~ 278 (400)
T 3p5b_L 267 -LHSISSIDVNGG 278 (400)
T ss_dssp -TTEEEEEETTSC
T ss_pred -CCEEEEEeCCCC
Confidence 366999998653
No 329
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=20.32 E-value=2.5e+02 Score=28.45 Aligned_cols=101 Identities=10% Similarity=-0.018 Sum_probs=49.6
Q ss_pred CcEEEEEcCCC--ceEEeccCCCCCCCCCceeeeEEEeCCEEEEEec-ccCCCCCcccCCCCCceeeeEEEEeCCCCeEE
Q 006384 209 NDLYVFDLDQF--KWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGG-YSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS 285 (647)
Q Consensus 209 ~dv~~yD~~t~--~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG-~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~ 285 (647)
..|+.+|..++ .|+.-... ..++..-.+.. ...++.+|++.. .++. ++.|++.+..|.
T Consensus 20 G~l~Ald~~tG~~~W~~~~~~--~~p~~~~~~~~-~~~~~~~~vv~p~~dG~----------------l~a~~~~~G~~~ 80 (339)
T 2be1_A 20 GGLHAVDRRNGHIIWSIEPEN--FQPLIEIQEPS-RLETYETLIIEPFGDGN----------------IYYFNAHQGLQK 80 (339)
T ss_dssp SCEEEEETTTTEEEEEECGGG--SCCSEECCCSC-TTTSSEEEEECCSTTTE----------------EEEEETTTEEEE
T ss_pred CeEEEEECCCCcEEEEecCCc--cCCcEEecCCc-cccCCcEEEEEECCCCE----------------EEEEECCCCcEE
Confidence 46888888765 48865431 00011100000 012556666653 3333 788888776554
Q ss_pred EeecCCC--CCCCceeeEEEEE-------CCeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 286 KVKKIGM--PPGPRAGFSMCVH-------KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 286 ~v~~~g~--~P~~R~~~s~~~~-------~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
.....+. .-.|..+.+.-++ .+..+++|+.. ..++.+|+.+++
T Consensus 81 ~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~--------------g~l~ald~~tG~ 132 (339)
T 2be1_A 81 LPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMR--------------TIMYTINMLNGE 132 (339)
T ss_dssp EEEEHHHHHTTCSEEEECC----------CCEEEEECEEE--------------EEEEEEETTTCC
T ss_pred eeeccccceeccccccCCCceeecccccccCCEEEEEecC--------------CEEEEEECCCCc
Confidence 3221100 0122222222333 56666677654 359999998885
No 330
>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A {Saccharomyces cerevisiae}
Probab=20.03 E-value=22 Score=40.25 Aligned_cols=12 Identities=17% Similarity=0.216 Sum_probs=0.0
Q ss_pred CeEEeecceecc
Q 006384 477 DQEITLDDLYSL 488 (647)
Q Consensus 477 ~~e~tl~D~~~l 488 (647)
.|++....|=+|
T Consensus 613 ske~ii~QL~sl 624 (956)
T 4aco_A 613 SRGYILHQLNLF 624 (956)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
Done!