BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006386
(647 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q60560|SMBP2_MESAU DNA-binding protein SMUBP-2 OS=Mesocricetus auratus GN=IGHMBP2 PE=1
SV=1
Length = 989
Score = 555 bits (1431), Expect = e-157, Method: Compositional matrix adjust.
Identities = 304/647 (46%), Positives = 418/647 (64%), Gaps = 20/647 (3%)
Query: 14 SLQEFVSVMAPLIDLEKEAEISASITSGASRNLDTAQKKGSTILNLKCVDAQTGLMGKTL 73
+++ FV+ L++LE++AE+ + +L Q +G +L L+ TGL G+ L
Sbjct: 5 TVESFVAQQLELLELERDAEVEERRSWQEHSSLKELQSRGVCLLKLQVSSQCTGLYGQRL 64
Query: 74 LEFQSTKGD---VLPAHKFGTHDVVVLKPNKADLGSPALGQGVVYRLKDSSITVAFDDIP 130
+ F+ K VLP++ F + D+V L S L GV+ R+ S+TVAFD+
Sbjct: 65 VTFEPRKLGPVVVLPSNSFTSGDIVGLYDANE---SSQLATGVLTRITQKSVTVAFDESH 121
Query: 131 EEGLN----SPLRLEKLANEVTYRRMKDALIQLSKGVQNGPAAGLIPVLFGEQKPTVLKK 186
+ LN + RL KLAN+VTY+R+K AL+ L K +GPA+ LI VL G P+ +
Sbjct: 122 DFQLNLDRENTYRLLKLANDVTYKRLKKALMTLKK-YHSGPASSLIDVLLGGSSPSPTTE 180
Query: 187 DIAFKPFNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246
F +N+ LD SQK+A+S AL+ K V ++HGPPGTGKTTTVVEIILQ VK+G KIL C
Sbjct: 181 IPPFTFYNTALDPSQKEAVSFALAQKEVAIIHGPPGTGKTTTVVEIILQAVKQGLKILCC 240
Query: 247 AASNIAVDNIVERLVPHRVRLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMK 306
A SN+AVDN+VERL + R++RLGHPARLL + +LDA + R DN+ + +DIRK++
Sbjct: 241 APSNVAVDNLVERLALCKKRILRLGHPARLLESAQQHSLDAVLARSDNAQIVADIRKDID 300
Query: 307 ALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVS---- 362
+ GK KT+DK + + E++ L KE ++R++ A+ + ADVVL T TGA S
Sbjct: 301 QVFGKNKKTQDKREKSNFRNEIKLLRKELKEREEAAIVQSLTAADVVLATNTGASSDGPL 360
Query: 363 RKLDNTSFDLVIIDEAAQALEIACWIALLKGSRCILAGDHLQLPPTVQSVEAEKKGLGRT 422
+ L FD+V++DE AQALE +CWI LLK +CILAGDH QLPPT S +A GL R+
Sbjct: 361 KLLPENHFDVVVVDECAQALEASCWIPLLKAPKCILAGDHRQLPPTTISHKAALAGLSRS 420
Query: 423 LFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSVAAHMLFDLEGVKRT 482
L ERL + +G MLTVQYRMH+ I W+S+ +Y+ ++ AHPSVA H+L DL GV T
Sbjct: 421 LMERLVEKHGAGAVRMLTVQYRMHQAITRWASEAMYHGQLTAHPSVAGHLLKDLPGVADT 480
Query: 483 SSTEPTLLLIDIAGCDMEEKKDEEDSTM--NEGEAEVAMAHAKRLIQSGVHASDIGIITP 540
T LLLID AGC + E DEEDS N GE + H + L+ +GVHA DI +I P
Sbjct: 481 EETSVPLLLIDTAGCGLLE-LDEEDSQSKGNPGEVRLVTLHIQALVDAGVHAGDIAVIAP 539
Query: 541 YAAQVVLLKILRSKDDKLKNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMN 600
Y QV LL+ +S +K +E+ +VDGFQGREKEA+I++ VRSN K EVGFL++ RR+N
Sbjct: 540 YNLQVDLLR--QSLSNKHPELEIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRRIN 597
Query: 601 VAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEYLSGSEYLNE 647
VAVTRARR ++CD+ TV++ FLK L++YF EH E + EYL++
Sbjct: 598 VAVTRARRHVAVICDSRTVNNHAFLKTLVDYFTEHGEVRTAFEYLDD 644
>sp|P40694|SMBP2_MOUSE DNA-binding protein SMUBP-2 OS=Mus musculus GN=Ighmbp2 PE=1 SV=1
Length = 993
Score = 548 bits (1413), Expect = e-155, Method: Compositional matrix adjust.
Identities = 296/649 (45%), Positives = 420/649 (64%), Gaps = 18/649 (2%)
Query: 11 SAVSLQEFVSVMAPLIDLEKEAEISASITSGASRNLDTAQKKGSTILNLKCVDAQTGLMG 70
++ +++ FV+ L++LE++AE+ + +L Q +G +L L+ +TGL G
Sbjct: 2 ASSTVESFVAQQLQLLELERDAEVEERRSWQEHSSLRELQSRGVCLLKLQVSSQRTGLYG 61
Query: 71 KTLLEFQSTK---GDVLPAHKFGTHDVVVLKPNKADLGSPALGQGVVYRLKDSSITVAFD 127
+ L+ F+ K VLP++ F + D+V L + L GV+ R+ S+TVAFD
Sbjct: 62 QRLVTFEPRKFGPAVVLPSNSFTSGDIVGLYDTNEN---SQLATGVLTRITQKSVTVAFD 118
Query: 128 DIPEEGLN----SPLRLEKLANEVTYRRMKDALIQLSKGVQNGPAAGLIPVLFGEQKPTV 183
+ + LN + RL KLAN+VTY+R+K AL+ L K +GPA+ LI +L G P+
Sbjct: 119 ESHDLQLNLDRENTYRLLKLANDVTYKRLKKALMTLKK-YHSGPASSLIDILLGSSTPSP 177
Query: 184 LKKDIAFKPFNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKI 243
+ +N+ LD SQK+A+S AL+ K + ++HGPPGTGKTTTVVEIILQ VK+G K+
Sbjct: 178 AMEIPPLSFYNTTLDLSQKEAVSFALAQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKV 237
Query: 244 LACAASNIAVDNIVERLVPHRVRLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRK 303
L CA SNIAVDN+VERL + R++RLGHPARLL V +LDA + R DN+ + +DIR+
Sbjct: 238 LCCAPSNIAVDNLVERLALCKKRILRLGHPARLLESVQHHSLDAVLARSDNAQIVADIRR 297
Query: 304 EMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVS- 362
++ + GK KT+DK + + E++ L KE ++R++ A+ + ADVVL T TGA S
Sbjct: 298 DIDQVFGKNKKTQDKREKGNFRSEIKLLRKELKEREEAAIVQSLTAADVVLATNTGASSD 357
Query: 363 ---RKLDNTSFDLVIIDEAAQALEIACWIALLKGSRCILAGDHLQLPPTVQSVEAEKKGL 419
+ L FD+V++DE AQALE +CWI LLK +CILAGDH QLPPT S A GL
Sbjct: 358 GPLKLLPEDYFDVVVVDECAQALEASCWIPLLKAPKCILAGDHRQLPPTTVSHRAALAGL 417
Query: 420 GRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSVAAHMLFDLEGV 479
R+L ERLA+ +G V MLTVQYRMH+ IM W+S+ +Y+ + +HPSVA H+L DL GV
Sbjct: 418 SRSLMERLAEKHGAGVVRMLTVQYRMHQAIMCWASEAMYHGQFTSHPSVAGHLLKDLPGV 477
Query: 480 KRTSSTEPTLLLIDIAGCDMEEKKDEED-STMNEGEAEVAMAHAKRLIQSGVHASDIGII 538
T T LLLID AGC + E ++E+ S N GE + H + L+ +GV A DI +I
Sbjct: 478 TDTEETRVPLLLIDTAGCGLLELEEEDSQSKGNPGEVRLVTLHIQALVDAGVQAGDIAVI 537
Query: 539 TPYAAQVVLLKILRSKDDKLKNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRR 598
PY QV LL+ +S +K +E+ +VDGFQGREKEA++++ VRSN K EVGFL++ RR
Sbjct: 538 APYNLQVDLLR--QSLSNKHPELEIKSVDGFQGREKEAVLLTFVRSNRKGEVGFLAEDRR 595
Query: 599 MNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEYLSGSEYLNE 647
+NVAVTRARR ++CD+ TV++ FL+ L++YF EH E + EYL++
Sbjct: 596 INVAVTRARRHVAVICDSHTVNNHAFLETLVDYFTEHGEVRTAFEYLDD 644
>sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3
Length = 993
Score = 540 bits (1391), Expect = e-152, Method: Compositional matrix adjust.
Identities = 297/649 (45%), Positives = 424/649 (65%), Gaps = 17/649 (2%)
Query: 11 SAVSLQEFVSVMAPLIDLEKEAEISASITSGASRNLDTAQKKGSTILNLKCVDAQTGLMG 70
++ +++ FV+ L++LE++AE+ + + +L Q +G +L L+ +TGL G
Sbjct: 2 ASAAVESFVTKQLDLLELERDAEVEERRSWQENISLKELQSRGVCLLKLQVSSQRTGLYG 61
Query: 71 KTLLEFQSTK---GDVLPAHKFGTHDVVVLKPNKADLGSPALGQGVVYRLKDSSITVAFD 127
+ L+ F+ + LP++ F + D+V L + A+ GS L G++ R+ S+TVAFD
Sbjct: 62 RLLVTFEPRRYGSAAALPSNSFTSGDIVGLY-DAANEGS-QLATGILTRVTQKSVTVAFD 119
Query: 128 DIPEEGLN----SPLRLEKLANEVTYRRMKDALIQLSKGVQNGPAAGLIPVLFGEQKPTV 183
+ + L+ + RL KLAN+VTYRR+K ALI L K +GPA+ LI VLFG P+
Sbjct: 120 ESHDFQLSLDRENSYRLLKLANDVTYRRLKKALIALKK-YHSGPASSLIEVLFGRSAPSP 178
Query: 184 LKKDIAFKPFNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKI 243
+ FN+ LD SQK+A+ ALS K + ++HGPPGTGKTTTVVEIILQ VK+G K+
Sbjct: 179 ASEIHPLTFFNTCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKV 238
Query: 244 LACAASNIAVDNIVERLVPHRVRLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRK 303
L CA SNIAVDN+VERL + R++RLGHPARLL + + +LDA + R D++ + +DIRK
Sbjct: 239 LCCAPSNIAVDNLVERLALCKQRILRLGHPARLLESIQQHSLDAVLARSDSAQIVADIRK 298
Query: 304 EMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVS- 362
++ + K KT+DK + + E++ L KE ++R++ A+ + + +A+VVL T TGA +
Sbjct: 299 DIDQVFVKNKKTQDKREKSNFRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASAD 358
Query: 363 ---RKLDNTSFDLVIIDEAAQALEIACWIALLKGSRCILAGDHLQLPPTVQSVEAEKKGL 419
+ L + FD+V+IDE AQALE +CWI LLK +CILAGDH QLPPT S +A GL
Sbjct: 359 GPLKLLPESYFDVVVIDECAQALEASCWIPLLKARKCILAGDHKQLPPTTVSHKAALAGL 418
Query: 420 GRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSVAAHMLFDLEGV 479
+L ERLA+ YG V LTVQYRMH+ IM W+S +Y ++ AH SVA H+L DL GV
Sbjct: 419 SLSLMERLAEEYGARVVRTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVARHLLRDLPGV 478
Query: 480 KRTSSTEPTLLLIDIAGCDMEEKKDE-EDSTMNEGEAEVAMAHAKRLIQSGVHASDIGII 538
T T LLL+D AGC + E ++E E S N GE + H + L+ +GV A DI ++
Sbjct: 479 AATEETGVPLLLVDTAGCGLFELEEEDEQSKGNPGEVRLVSLHIQALVDAGVPARDIAVV 538
Query: 539 TPYAAQVVLLKILRSKDDKLKNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRR 598
+PY QV LL+ +S + +E+ +VDGFQGREKEA+I+S VRSN K EVGFL++ RR
Sbjct: 539 SPYNLQVDLLR--QSLVHRHPELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRR 596
Query: 599 MNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEYLSGSEYLNE 647
+NVAVTRARR ++CD+ TV++ FLK L+EYF +H E + EYL++
Sbjct: 597 INVAVTRARRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRTAFEYLDD 645
>sp|Q9EQN5|SMBP2_RAT DNA-binding protein SMUBP-2 OS=Rattus norvegicus GN=Ighmbp2 PE=1
SV=1
Length = 988
Score = 534 bits (1375), Expect = e-150, Method: Compositional matrix adjust.
Identities = 297/649 (45%), Positives = 420/649 (64%), Gaps = 18/649 (2%)
Query: 11 SAVSLQEFVSVMAPLIDLEKEAEISASITSGASRNLDTAQKKGSTILNLKCVDAQTGLMG 70
++ +++ FV+ L++LE++AE+ + +L Q +G +L L+ +TGL G
Sbjct: 2 ASYTVESFVAQQLQLLELERDAEVEERRSWQEHSSLKELQSRGVCLLKLQVSGQRTGLYG 61
Query: 71 KTLLEFQSTK---GDVLPAHKFGTHDVVVLKPNKADLGSPALGQGVVYRLKDSSITVAFD 127
+ L+ F+ K VLP++ F + D+V L S L GV+ R+ S+ VAFD
Sbjct: 62 QRLVTFEPRKFGPAVVLPSNSFTSGDIVGLYDTNE---SSQLATGVLTRITQKSVIVAFD 118
Query: 128 DIPEEGLN----SPLRLEKLANEVTYRRMKDALIQLSKGVQNGPAAGLIPVLFGEQKPTV 183
+ + LN + RL KLAN+VTY+R+K AL+ L K +GPA+ LI VL G P+
Sbjct: 119 ESHDFQLNLDRENTYRLLKLANDVTYKRLKKALLTLKK-YHSGPASSLIDVLLGGSTPSP 177
Query: 184 LKKDIAFKPFNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKI 243
+ +N+ LD SQK+A+S AL+ K V ++HGPPGTGKTTTVVEIILQ VK+G K+
Sbjct: 178 ATEIPPLTFYNTTLDPSQKEAVSFALAQKEVAIIHGPPGTGKTTTVVEIILQAVKQGLKV 237
Query: 244 LACAASNIAVDNIVERLVPHRVRLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRK 303
L CA SNIAVDN+VERL + +++RLGHPARLL V + +LDA + R DN+ + +DIR+
Sbjct: 238 LCCAPSNIAVDNLVERLALCKKQILRLGHPARLLESVQQHSLDAVLARSDNAQIVADIRR 297
Query: 304 EMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVS- 362
++ + GK KT+DK + + E++ L KE ++R++ A+ + ADVVL T TGA +
Sbjct: 298 DIDQVFGKNKKTQDKREKSNFRNEIKLLRKELKEREEAAIVQSLSAADVVLATNTGASTD 357
Query: 363 ---RKLDNTSFDLVIIDEAAQALEIACWIALLKGSRCILAGDHLQLPPTVQSVEAEKKGL 419
+ L FD+V++DE AQALE +CWI LLK +CILAGDH QLPPT S +A GL
Sbjct: 358 GPLKLLPEDYFDVVVVDECAQALEASCWIPLLKAPKCILAGDHKQLPPTTVSHKAALAGL 417
Query: 420 GRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSVAAHMLFDLEGV 479
R+L ERLA+ +G V ML VQYRMH+ I W+S+ +Y+ ++ AHPSVA H+L DL GV
Sbjct: 418 SRSLMERLAEKHGAAVVRMLAVQYRMHQAITRWASEAMYHGQLTAHPSVAGHLLKDLPGV 477
Query: 480 KRTSSTEPTLLLIDIAGCDMEEKKDEED-STMNEGEAEVAMAHAKRLIQSGVHASDIGII 538
T T LLLID AGC + E ++E+ S N GE + H + L+ +GV A DI +I
Sbjct: 478 ADTEETSVPLLLIDTAGCGLLELEEEDSQSKGNPGEVRLVTLHIQALVDAGVQAGDIAVI 537
Query: 539 TPYAAQVVLLKILRSKDDKLKNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRR 598
PY QV LL+ +S +K +E+ +VDGFQGREKEA+I++ VRSN K EVGFL++ RR
Sbjct: 538 APYNLQVDLLR--QSLSNKHPELEIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRR 595
Query: 599 MNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEYLSGSEYLNE 647
+NVAVTRARR ++CD+ TV++ FLK L++YF EH E + EYL++
Sbjct: 596 INVAVTRARRHVAVICDSHTVNNHAFLKTLVDYFTEHGEVRTAFEYLDD 644
>sp|O94247|HCS1_SCHPO DNA polymerase alpha-associated DNA helicase A
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hcs1 PE=3 SV=1
Length = 660
Score = 427 bits (1099), Expect = e-118, Method: Compositional matrix adjust.
Identities = 255/651 (39%), Positives = 374/651 (57%), Gaps = 45/651 (6%)
Query: 15 LQEFVSVMAPLIDLEKEAEISASITSGASRNLDTAQKKGSTILNLKCVDAQTGLMGKTLL 74
+Q+F +D +++E+ + S L Q+KG ++NL+ +TG GKT++
Sbjct: 15 IQKFGDREIEFVDEAQKSEVDETEKSIKRFPLSVLQRKGLALINLRIGVVKTGFGGKTII 74
Query: 75 EFQS----TKGDVLPAHKFGTHDVVVLK----------PNKADLGSPALGQGVVYRLKDS 120
+F+ + G+ LPA+ F DVV ++ PN+ D+ +GVV R+ +
Sbjct: 75 DFEKDPAFSNGEELPANSFSPGDVVSIRQDFQSSKKKRPNETDISV----EGVVTRVHER 130
Query: 121 SITVAF---DDIPEEGLNSPLRLEKLANEVTYRRMKDALIQLSKGVQNGPAAGLIPVLFG 177
I+VA +DIP + L + KL N VTY RM+ +++ + + + L L G
Sbjct: 131 HISVALKSEEDIPSSV--TRLSVVKLVNRVTYERMRHTMLEFKRSIPEYRNS-LFYTLIG 187
Query: 178 EQKPTV-----LKKDIAFKPFNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEI 232
+K V L DI + FN L+ SQK A+ +++ K + ++HGPPGTGKT T+VEI
Sbjct: 188 RKKADVSIDQKLIGDIKY--FNKELNASQKKAVKFSIAVKELSLIHGPPGTGKTHTLVEI 245
Query: 233 ILQEVKRGSKILACAASNIAVDNIVERLVPHRVRLVRLGHPARLLPQVLESALDAQVLRG 292
I Q V R +IL C ASN+AVDNIV+RL + +VRLGHPARLLP +L+ +LD G
Sbjct: 246 IQQLVLRNKRILVCGASNLAVDNIVDRLSSSGIPMVRLGHPARLLPSILDHSLDVLSRTG 305
Query: 293 DNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADV 352
DN + I +++ K+ KTK+ RREI K +R L K+ RK + V +++ + V
Sbjct: 306 DNGDVIRGISEDIDVCLSKITKTKNGRERREIYKNIRELRKDYRKYEAKTVANIVSASKV 365
Query: 353 VLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIACWIALLKGSRCILAGDHLQLPPTVQSV 412
V TL GA SR+L FD VIIDEA+QALE CWI LL ++ ILAGDH+QL P VQS
Sbjct: 366 VFCTLHGAGSRQLKGQRFDAVIIDEASQALEPQCWIPLLGMNKVILAGDHMQLSPNVQS- 424
Query: 413 EAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSVAAHM 472
K ++FERL GD V L +QYRMHE I + S Y+SK+ V +
Sbjct: 425 ----KRPYISMFERLVKSQGDLVKCFLNIQYRMHELISKFPSDTFYDSKLVPAEEVKKRL 480
Query: 473 LFDLEGVKRTSSTEPTLLLIDIAGCDMEEKKDE------EDSTMNEGEAEVAMAHAKRLI 526
L DLE V+ T T+ + D G E+ + E +DS N EA++ H L+
Sbjct: 481 LMDLENVEETELTDSPIYFYDTLGNYQEDDRSEDMQNFYQDSKSNHWEAQIVSYHISGLL 540
Query: 527 QSGVHASDIGIITPYAAQVVLLKILRSKDDKLKNMEVSTVDGFQGREKEAIIISMVRSNS 586
++G+ A DI ++TPY AQV L++ L +K +E+ +VD QGREKEAII S+VRSN
Sbjct: 541 EAGLEAKDIAVVTPYNAQVALIRQLLK--EKGIEVEMGSVDKVQGREKEAIIFSLVRSND 598
Query: 587 KKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVS-SDGFLKRLIEYFEEHA 636
+EVGFL+++RR+NVA+TR +R C++ D+ TV + F + +++ EE+A
Sbjct: 599 VREVGFLAEKRRLNVAITRPKRHLCVIGDSNTVKWASEFFHQWVDFLEENA 649
>sp|P34243|HCS1_YEAST DNA polymerase alpha-associated DNA helicase A OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HCS1 PE=1
SV=1
Length = 683
Score = 334 bits (857), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 248/696 (35%), Positives = 384/696 (55%), Gaps = 81/696 (11%)
Query: 16 QEFVSVMAPLIDLEKEAEISASITSGASRNLDTAQKKGSTILNLKCVDAQTGLMGKTLLE 75
+E S I E+E +I + + ++ + G I N+ + ++GL+GK +E
Sbjct: 3 KELASKFLSSIKHEREQDIQTTSRLLTTLSIQQLVQNGLAINNIHLENIRSGLIGKLYME 62
Query: 76 F--------QSTKGDVLPAHKFGTHDVVVLKPNKADL----------------GSPALGQ 111
+ +GD+ K G D+V+++P K + G A
Sbjct: 63 LGPNLAVNDKIQRGDI----KVG--DIVLVRPAKTKVNTKTKPKVKKVSEDSNGEQAECS 116
Query: 112 GVVYRLKDSSITVAFD---DIPEEGLNS--PLRLEKLANEVTYRRMKDALIQLSKGVQNG 166
GVVY++ D+ IT+A + D+ S L + K N VTY RM+ + +LS+ +
Sbjct: 117 GVVYKMSDTQITIALEESQDVIATTFYSYSKLYILKTTNVVTYNRMESTMRKLSEI--SS 174
Query: 167 PAAGLIPVLFGEQKPTVLKKDIAF---KPF-NSNLDHSQKDAISKALSSKNVFMLHGPPG 222
P I ++P + + +F K F N NL+ SQK AI+ A+++ ++ ++HGPPG
Sbjct: 175 PIQDKIIQYLVNERPFIPNTN-SFQNIKSFLNPNLNDSQKTAINFAINN-DLTIIHGPPG 232
Query: 223 TGKTTTVVEIILQEVKRG--SKILACAASNIAVDNIVERL---VPHRVRLVRLGHPARLL 277
TGKT T++E+I Q + + +IL C SNI+VD I+ERL VP+ + L+R+GHPARLL
Sbjct: 233 TGKTFTLIELIQQLLIKNPEERILICGPSNISVDTILERLTPLVPNNL-LLRIGHPARLL 291
Query: 278 PQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERK 337
+LD +L N+ + DI +E+ L + K K+ R+E E++ L K+ +K
Sbjct: 292 DSNKRHSLD--ILSKKNT-IVKDISQEIDKLIQENKKLKNYKQRKENWNEIKLLRKDLKK 348
Query: 338 RQQLAVTDVIKNADVVLTTLTGAVSRKL-----DNTSF---DLVIIDEAAQALEIACWIA 389
R+ + D+I + +V+TTL G+ SR+L D+ +F D +IIDE +QA+E CWI
Sbjct: 349 REFKTIKDLIIQSRIVVTTLHGSSSRELCSLYRDDPNFQLFDTLIIDEVSQAMEPQCWIP 408
Query: 390 LL----KGSRCILAGDHLQLPPTVQSVEAEKK---GLGRTLFERLADLYGD-EVTSMLTV 441
L+ + + +LAGD+ QLPPT+++ E +K L TLF+R+ ++ ++ L V
Sbjct: 409 LIAHQNQFHKLVLAGDNKQLPPTIKT-EDDKNVIHNLETTLFDRIIKIFPKRDMVKFLNV 467
Query: 442 QYRMHEHIMNWSSKQLYNSKIKAHPSVAAHMLFDLEGVKRTSS-----TEPTLLLIDIAG 496
QYRM++ IM + S +YN K+ A +VA +L DL V T S T+ L+ D G
Sbjct: 468 QYRMNQKIMEFPSHSMYNGKLLADATVANRLLIDLPTVDATPSEDDDDTKIPLIWYDTQG 527
Query: 497 CDMEEKKDEED---STMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILRS 553
+ +E DE S NEGE + H + L V + IG+I+PY AQV LK L
Sbjct: 528 DEFQETADEATILGSKYNEGEIAIVKEHIENLRSFNVPENSIGVISPYNAQVSHLKKLIH 587
Query: 554 KDDKLKNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLV 613
+ KL ++E+STVDGFQGREK+ II+S+VRSN K EVGFL + RR+NVA+TR RRQ +V
Sbjct: 588 DELKLTDIEISTVDGFQGREKDVIILSLVRSNEKFEVGFLKEERRLNVAMTRPRRQLVVV 647
Query: 614 CDTETVSSDG--FLKRLIEYFEEHAE--YLSGSEYL 645
+ E + G +LK E+ EE+A+ Y + +YL
Sbjct: 648 GNIEVLQRCGNKYLKSWSEWCEENADVRYPNIDDYL 683
>sp|Q57568|Y104_METJA Uncharacterized ATP-dependent helicase MJ0104 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0104 PE=3 SV=1
Length = 663
Score = 308 bits (789), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 234/677 (34%), Positives = 361/677 (53%), Gaps = 96/677 (14%)
Query: 18 FVSVMAPLIDLEKEAEISAS----ITSGASRNLDTAQKKGSTILNLKCVDAQTGLMGKTL 73
+V LI++E+ E+ I G R + G ILNLK L G T+
Sbjct: 17 YVKKFMDLIEIERRCEMDFHKNEIIKLGKKR-----ENVGRAILNLKGKFLGESL-GCTI 70
Query: 74 LEF---QSTKGDVLPAHKFGTHDVVVL---KPNKADLGSPALGQGVVYRLKDSSITVAFD 127
+ F + K ++ P DVV++ P ++DL + + G + I VAFD
Sbjct: 71 VRFGRKKPFKTEISPG------DVVLVSKENPLQSDLYANVIYVG------KNFIDVAFD 118
Query: 128 -DIPEEGLNSPLRLEKLANEVTYRRMKDALIQLSKGVQNGPAAGLIPVLFGEQKPTVLKK 186
D+P+ +R++ N++T++RMK+AL + ++ + A +I + +KP L++
Sbjct: 119 VDVPKWVYKERVRVDLYVNDITFKRMKEALREFAR--KRDKLAYIILGIEHPEKP--LRE 174
Query: 187 DIAFKPFNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGS-KILA 245
DI + ++ NL+ SQK A+ KA+ S++++++HGPPGTGKT T+ E+I+QEVK K+LA
Sbjct: 175 DIKLEFYDKNLNESQKLAVKKAVLSRDLYLIHGPPGTGKTRTITEVIVQEVKFNKHKVLA 234
Query: 246 CAASNIAVDNIVERLVPHR--VRLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIR- 302
A SNIA DNI+E L+ +++VR+GHP R+ +++ +L + + +R
Sbjct: 235 TADSNIAADNILEYLIKKYPDLKVVRVGHPTRISKDLIQHSLPYLIENHEKYQEILALRE 294
Query: 303 --KEMKALNGKLLK-----------------TKDKNTRREIQKELRTLSKEERKRQQLAV 343
KE+K K LK K K + R I KE + +S E + +
Sbjct: 295 KIKEIKEQRDKFLKPSPRWRRGMSDEQILKVAKRKKSYRGIPKE-KIVSMAEWIIRNKKI 353
Query: 344 TDVIKN---------------ADVVLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIACWI 388
+I N ADV++ T + A S L FD+++IDE +QA+E +C I
Sbjct: 354 KRIINNLDEITEKIMNEILAEADVIVATNSMAGSEILKGWEFDVIVIDEGSQAMEPSCLI 413
Query: 389 ALLKGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEH 448
++KG + I+AGDH QLPPTV S E + L +TLFERL Y E +S+L +QYRM+E
Sbjct: 414 PIVKGRKLIMAGDHKQLPPTVLS---ENEELKKTLFERLIKKYP-EFSSILEIQYRMNEK 469
Query: 449 IMNWSSKQLYNSKIKAHPSVAAHMLFDL------EGVKRTSSTEPTLLLIDIAGCDMEEK 502
IM + +K YN+K+KA SV L DL + V R E + I++ G +E K
Sbjct: 470 IMEFPNKMFYNNKLKADESVKNITLLDLVKEEEIDEVDRDIINEIPVQFINVEG--IERK 527
Query: 503 KDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSKDDKLKNME 562
E S N EAE + K+L++ + + +ITPY AQV L+ L + + ++E
Sbjct: 528 DKESPSYYNIEEAEKVLEIVKKLVKYKIPTN---VITPYDAQVRYLRRLFEEHN--IDIE 582
Query: 563 VSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSD 622
V+TVDGFQGRE EAI+IS VR+ K GFL D RR+NVA+TRA+R+ L+ + + D
Sbjct: 583 VNTVDGFQGRENEAIVISFVRT---KNFGFLKDLRRLNVAITRAKRKLILIGNENLLKQD 639
Query: 623 GFLKRLIEYF----EEH 635
+I++ EEH
Sbjct: 640 KVYNEMIKWAKSVEEEH 656
>sp|Q9FJR0|RENT1_ARATH Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana
GN=UPF1 PE=1 SV=2
Length = 1254
Score = 211 bits (538), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 143/447 (31%), Positives = 231/447 (51%), Gaps = 28/447 (6%)
Query: 197 LDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRG-SKILACAASNIAVDN 255
L+ SQ +A+ K++ K + ++ GPPGTGKT T I+ K+G ++L CA SN+AVD
Sbjct: 489 LNASQVNAV-KSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQ 547
Query: 256 IVERLVPHRVRLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKT 315
+ E++ +++VRL +R + + S ++ L L + + E+ KL +
Sbjct: 548 LAEKISATGLKVVRLCAKSR---EAVSSPVEYLTLHYQVRHLDTSEKSELH----KLQQL 600
Query: 316 KDKNTRREIQKELRTLSKEERKRQQLAVT-DVIKNADVVLTTLTGAVSRKLDNTSFDLVI 374
KD+ Q EL + +++ K + A ++ ++ADV+ T GA +L N F V+
Sbjct: 601 KDE------QGELSSSDEKKYKNLKRATEREITQSADVICCTCVGAADLRLSNFRFRQVL 654
Query: 375 IDEAAQALEIACWIALLKG-SRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGD 433
IDE+ QA E C I L+ G + +L GDH QL P + +A + GL ++LFERL L
Sbjct: 655 IDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVTLGIK 714
Query: 434 EVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSVAAHMLFDLEGVKRTSSTEPTLLLID 493
+ L VQYRMH + + S Y ++ ++ ++ P +
Sbjct: 715 PIR--LQVQYRMHPALSEFPSNSFYEGTLQNGVTIIERQTTGID-FPWPVPNRPMFFYVQ 771
Query: 494 IAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILRS 553
+ EE S +N EA ++SGV S IG+ITPY Q + +
Sbjct: 772 LG---QEEISASGTSYLNRTEAANVEKLVTAFLKSGVVPSQIGVITPYEGQRAYIVNYMA 828
Query: 554 KDDKL-----KNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARR 608
++ L K +EV++VD FQGREK+ II+S VRSN + +GFL+D RR+NVA+TRAR
Sbjct: 829 RNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARY 888
Query: 609 QCCLVCDTETVSSDGFLKRLIEYFEEH 635
++ + + +S L+ +++EH
Sbjct: 889 GIVILGNPKVLSKQPLWNGLLTHYKEH 915
>sp|Q9HEH1|RENT1_NEUCR Regulator of nonsense transcripts 1 homolog OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=2E4.130 PE=3 SV=1
Length = 1093
Score = 208 bits (530), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 146/450 (32%), Positives = 235/450 (52%), Gaps = 38/450 (8%)
Query: 197 LDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK-RGSKILACAASNIAVDN 255
L+ SQ AI + LS+ + ++ GPPGTGKT T II K S++L CA SN+AVD
Sbjct: 456 LNASQIAAIKQVLSNP-LSLIQGPPGTGKTVTSATIIYHLAKMSNSQVLVCAPSNVAVDQ 514
Query: 256 IVERLVPHRVRLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKL--- 312
+ ER+ +++VRL +R + +ES++ S LA + M N +L
Sbjct: 515 LCERIHRTGLKVVRLTAKSR---EDVESSV---------SFLALHEQVRMNTTNKELDGL 562
Query: 313 --LKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVSRKLDNTSF 370
LKT+ + +K + L+++ + ++++NADVV T GA +L F
Sbjct: 563 VKLKTETGELSSQDEKRFKQLTRQAER-------EILQNADVVCCTCVGAGDPRLSKMKF 615
Query: 371 DLVIIDEAAQALEIACWIALLKGSR-CILAGDHLQLPPTVQSVEAEKKGLGRTLFERLAD 429
V+IDE+ Q+ E C I L+ G + +L GDH QL P + + +A K GL ++LFERL
Sbjct: 616 RNVLIDESTQSAEPECMIPLVLGCKQVVLVGDHKQLGPVIMNKKAAKAGLNQSLFERLVK 675
Query: 430 LYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSVAAHMLFDLEGVKRTSSTEPTL 489
L + L VQYRMH + + S Y ++ + A + D++ T P +
Sbjct: 676 LQFTPIR--LKVQYRMHPCLSEFPSNMFYEGSLQNGVTAAERLRKDVDFPWPVPET-PMM 732
Query: 490 LLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQ-VVLL 548
++ EE S +N EA R ++GV +DIG+ITPY Q ++
Sbjct: 733 FWSNLGN---EEISASGTSYLNRTEAANVEKIVTRFFKAGVKPADIGVITPYEGQRSYIV 789
Query: 549 KILRS----KDDKLKNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVT 604
+++ K + + +EV++VD FQGREK+ I++S VRSN + +GFLSD RR+NVA+T
Sbjct: 790 NTMQNTGTFKKESYREVEVASVDAFQGREKDFIVLSCVRSNENQGIGFLSDPRRLNVALT 849
Query: 605 RARRQCCLVCDTETVSSDGFLKRLIEYFEE 634
RA+ ++ + + + L+ +F++
Sbjct: 850 RAKYGLVIIGNPKVLCKHELWHHLLVHFKD 879
>sp|Q9EPU0|RENT1_MOUSE Regulator of nonsense transcripts 1 OS=Mus musculus GN=Upf1 PE=1
SV=2
Length = 1124
Score = 203 bits (517), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 150/457 (32%), Positives = 233/457 (50%), Gaps = 36/457 (7%)
Query: 196 NLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGS-KILACAASNIAVD 254
+L+HSQ A+ K + + + ++ GPPGTGKT T I+ ++G+ +L CA SNIAVD
Sbjct: 476 DLNHSQVYAV-KTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVD 534
Query: 255 NIVERLVPHRVRLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRK--EMKALNGKL 312
+ E++ +++VRL +R A+D+ V +L + IR M L KL
Sbjct: 535 QLTEKIHQTGLKVVRLCAKSR-------EAIDSPV---SFLALHNQIRNMDSMPELQ-KL 583
Query: 313 LKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVSRKLDNTSFDL 372
+ KD+ E K R ++ A +++ NADV+ T GA +L F
Sbjct: 584 QQLKDETGELSSADE-----KRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRS 638
Query: 373 VIIDEAAQALEIACWIALLKGSR-CILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLY 431
++IDE+ QA E C + ++ G++ IL GDH QL P V +A K GL ++LFERL L
Sbjct: 639 ILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLG 698
Query: 432 GDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSVAAHML--FDLEGVKRTSSTEPTL 489
+ L VQYRMH + + S Y ++ + A + FD + + +P
Sbjct: 699 IRPIR--LQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ---PDKPMF 753
Query: 490 LLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQ----V 545
+ EE S +N EA +L+++G IGIITPY Q V
Sbjct: 754 FYVTQG---QEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLV 810
Query: 546 VLLKILRSKDDKL-KNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVT 604
++ S KL + +E+++VD FQGREK+ II+S VR+N + +GFL+D RR+NVA+T
Sbjct: 811 QYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALT 870
Query: 605 RARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEYLSG 641
RAR +V + + +S L+ Y++E + G
Sbjct: 871 RARYGVIIVGNPKALSKQPLWNHLLSYYKEQKALVEG 907
>sp|Q92900|RENT1_HUMAN Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1
SV=2
Length = 1129
Score = 203 bits (516), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 150/457 (32%), Positives = 233/457 (50%), Gaps = 36/457 (7%)
Query: 196 NLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGS-KILACAASNIAVD 254
+L+HSQ A+ K + + + ++ GPPGTGKT T I+ ++G+ +L CA SNIAVD
Sbjct: 481 DLNHSQVYAV-KTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVD 539
Query: 255 NIVERLVPHRVRLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRK--EMKALNGKL 312
+ E++ +++VRL +R A+D+ V +L + IR M L KL
Sbjct: 540 QLTEKIHQTGLKVVRLCAKSR-------EAIDSPV---SFLALHNQIRNMDSMPELQ-KL 588
Query: 313 LKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVSRKLDNTSFDL 372
+ KD+ E K R ++ A +++ NADV+ T GA +L F
Sbjct: 589 QQLKDETGELSSADE-----KRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRS 643
Query: 373 VIIDEAAQALEIACWIALLKGSR-CILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLY 431
++IDE+ QA E C + ++ G++ IL GDH QL P V +A K GL ++LFERL L
Sbjct: 644 ILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLG 703
Query: 432 GDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSVAAHML--FDLEGVKRTSSTEPTL 489
+ L VQYRMH + + S Y ++ + A + FD + + +P
Sbjct: 704 IRPIR--LQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ---PDKPMF 758
Query: 490 LLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQ----V 545
+ EE S +N EA +L+++G IGIITPY Q V
Sbjct: 759 FYVTQG---QEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLV 815
Query: 546 VLLKILRSKDDKL-KNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVT 604
++ S KL + +E+++VD FQGREK+ II+S VR+N + +GFL+D RR+NVA+T
Sbjct: 816 QYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALT 875
Query: 605 RARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEYLSG 641
RAR +V + + +S L+ Y++E + G
Sbjct: 876 RARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEG 912
>sp|Q54I89|RENT1_DICDI Regulator of nonsense transcripts 1 OS=Dictyostelium discoideum
GN=upf1 PE=3 SV=1
Length = 1331
Score = 199 bits (505), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 145/461 (31%), Positives = 229/461 (49%), Gaps = 41/461 (8%)
Query: 197 LDHSQKDAISKALSSKNVFMLHGPPGTGKT---TTVVEIILQEVKRGSKILACAASNIAV 253
L+ SQ A++K L++ + ++ GPPGTGKT + ++ +++ VK K+L C SN+A+
Sbjct: 537 LNESQISAVNKVLTAP-LSLIQGPPGTGKTVISSFIIHHLVKYVKGNDKVLVCTPSNVAI 595
Query: 254 DNIVERLVPHRVRLVRLGHPAR--LLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGK 311
D + +L +++VRL R + V L QV + D +G+
Sbjct: 596 DQLTGKLHEIGLKVVRLSSKLREEVASPVEHLTLHKQVYKLDQMG------------DGE 643
Query: 312 LLKTKDKNTRREIQKELRTLSKEERKR----QQLAVTDVIKNADVVLTTLTGAVSRKLDN 367
L K R++++ +LS E+ KR +++ +++ ADV+ T GA +L
Sbjct: 644 LGKL------RKLKEAFGSLSNEDEKRYIYLRRMMEMAILRKADVICATCVGAGDPRLSQ 697
Query: 368 TSFDLVIIDEAAQALEIACWIALLKGSR-CILAGDHLQLPPTVQSVEAEKKGLGRTLFER 426
F ++IDE+ QA E C I L+ G++ IL GDH QL P + + GL ++LFER
Sbjct: 698 FRFPHILIDESTQASEPECLIPLMMGAKQVILVGDHRQLGPVLLCKKVVDAGLSQSLFER 757
Query: 427 LADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSVAAHMLFDLEGVKRTSSTE 486
L L LT+QYRMH + + S Y ++ S +H D + +
Sbjct: 758 LISL--GHHPERLTIQYRMHPSLTEFPSNTSYEGQLV---SELSHTDRDSQSKFPWPQPK 812
Query: 487 PTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVV 546
+ + G EE S +N EA + + ++ G IGIITPY Q
Sbjct: 813 DPMFFFNCTGS--EEISSSGTSFINTTEASICEKIVTKFLELGSLPGQIGIITPYEGQRA 870
Query: 547 LLKILRSKDDKL-----KNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNV 601
+ K KL K++EV++VD FQGREK+ II+S VRSN + +GFL D RR+NV
Sbjct: 871 YITSHMQKSGKLNLELYKSIEVASVDSFQGREKDYIILSCVRSNDYQGIGFLQDPRRLNV 930
Query: 602 AVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEYLSGS 642
A+TRAR ++ + + +S D LI +F+ + GS
Sbjct: 931 ALTRARFGLIILGNAKVLSKDPLWNSLISHFKNKNVLVEGS 971
>sp|P30771|NAM7_YEAST ATP-dependent helicase NAM7 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=NAM7 PE=1 SV=1
Length = 971
Score = 197 bits (501), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 171/564 (30%), Positives = 274/564 (48%), Gaps = 69/564 (12%)
Query: 110 GQGVVYRLKDSSITVAFDDI-----------PEEGLNSPLRLEKLANEVTYRRMKDALIQ 158
G+G + RL +S F D P L + E + +Y RM+DAL +
Sbjct: 313 GRGYIVRLPNS-----FQDTFTLELKPSKTPPPTHLTTGFTAEFIWKGTSYDRMQDALKK 367
Query: 159 LSKGVQNGPAAGLIPV-LFGEQKPTV-----LKKDIAFKPFNSNLDHSQKDAISKALSSK 212
+ + +G + + G Q + L K+ + F + L+ SQ +A+S L +
Sbjct: 368 FA--IDKKSISGYLYYKILGHQVVDISFDVPLPKEFSIPNF-AQLNSSQSNAVSHVLQ-R 423
Query: 213 NVFMLHGPPGTGKTTTVVEIILQEVK-RGSKILACAASNIAVDNIVERLVPHRVRLVRLG 271
+ ++ GPPGTGKT T I+ K +IL CA SN+AVD++ +L +++VRL
Sbjct: 424 PLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLKVVRLT 483
Query: 272 HPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTL 331
+R + +ES++ N +L + + + K LLK KD E+ L
Sbjct: 484 AKSR---EDVESSVS-------NLALHNLVGRGAKGELKNLLKLKD---------EVGEL 524
Query: 332 SKEERKRQQLAV----TDVIKNADVVLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIACW 387
S + KR V +++ ADVV T GA ++LD T F V+IDE+ QA E C
Sbjct: 525 SASDTKRFVKLVRKTEAEILNKADVVCCTCVGAGDKRLD-TKFRTVLIDESTQASEPECL 583
Query: 388 IALLKGSR-CILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMH 446
I ++KG++ IL GDH QL P + +A GL ++LFERL L V L VQYRM+
Sbjct: 584 IPIVKGAKQVILVGDHQQLGPVILERKAADAGLKQSLFERLISL--GHVPIRLEVQYRMN 641
Query: 447 EHIMNWSSKQLYNSKIKAHPSVAAHMLFDLEGVKRTSSTEPT--LLLIDIAGCDMEEKKD 504
++ + S Y ++ ++ V + P + ++ A EE
Sbjct: 642 PYLSEFPSNMFYEGSLQNGVTIEQRT------VPNSKFPWPIRGIPMMFWANYGREEISA 695
Query: 505 EEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQ-VVLLKILR-----SKDDKL 558
S +N EA +L + GV IG+ITPY Q +L+ ++ KD +
Sbjct: 696 NGTSFLNRIEAMNCERIITKLFRDGVKPEQIGVITPYEGQRAYILQYMQMNGSLDKDLYI 755
Query: 559 KNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTET 618
K +EV++VD FQGREK+ II+S VR+N ++ +GFL D RR+NV +TRA+ ++ + +
Sbjct: 756 K-VEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDPRRLNVGLTRAKYGLVILGNPRS 814
Query: 619 VSSDGFLKRLIEYFEEHAEYLSGS 642
++ + L+ +F E + G+
Sbjct: 815 LARNTLWNHLLIHFREKGCLVEGT 838
>sp|Q9VYS3|RENT1_DROME Regulator of nonsense transcripts 1 homolog OS=Drosophila
melanogaster GN=Upf1 PE=1 SV=2
Length = 1180
Score = 194 bits (493), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 150/481 (31%), Positives = 234/481 (48%), Gaps = 44/481 (9%)
Query: 174 VLFGEQKPTVLKKDIAFKPFNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEII 233
VLF +P + P +L+ SQ A+ AL + + ++ GPPGTGKT T I+
Sbjct: 434 VLFRGPQPKLFSA-----PHLPDLNRSQVYAVKHALQ-RPLSLIQGPPGTGKTVTSATIV 487
Query: 234 LQEVK-RGSKILACAASNIAVDNIVERLVPHRVRLVRLGHPARLLPQVLESALDAQV--L 290
Q VK G +L CA SN AVD + E++ +++VR+ +R A+D+ V L
Sbjct: 488 YQLVKLHGGTVLVCAPSNTAVDQLTEKIHRTNLKVVRVCAKSR-------EAIDSPVSFL 540
Query: 291 RGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNA 350
N + E+K KL + KD+ E K R ++ A +++ A
Sbjct: 541 ALHNQIRNMETNSELK----KLQQLKDETGELSSADE-----KRYRNLKRAAENQLLEAA 591
Query: 351 DVVLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIACWIALLKGSR-CILAGDHLQLPPTV 409
DV+ T GA +L F ++IDE+ Q+ E C + ++ G++ IL GDH QL P V
Sbjct: 592 DVICCTCVGAGDGRLSRVKFTSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVV 651
Query: 410 QSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSVA 469
+A + GL ++LFERL L L VQYRMH + + S Y ++
Sbjct: 652 MCKKAARAGLSQSLFERLVVLGIRPFR--LEVQYRMHPELSQFPSNFFYEGSLQNGVCAE 709
Query: 470 AHML---FDLEGVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLI 526
L F +R P L+ EE S +N EA R +
Sbjct: 710 DRRLKLDFPWPQPER-----PMFFLVTQG---QEEIAGSGTSFLNRTEAANVEKITTRFL 761
Query: 527 QSGVHASDIGIITPYAAQ----VVLLKILRSKDDKL-KNMEVSTVDGFQGREKEAIIISM 581
++G+ IGIITPY Q V ++ S +L + +E+++VD FQGREK+ II+S
Sbjct: 762 KAGIKPEQIGIITPYEGQRAYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSC 821
Query: 582 VRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEYLSG 641
VRSN ++ +GFL+D RR+NVA+TRA+ +V + + ++ L+ ++++ + G
Sbjct: 822 VRSNERQGIGFLNDPRRLNVALTRAKFGIIIVGNPKVLAKQQLWNHLLNFYKDRKVLVEG 881
Query: 642 S 642
S
Sbjct: 882 S 882
>sp|Q92355|SEN1_SCHPO Helicase sen1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sen1 PE=1 SV=1
Length = 1687
Score = 193 bits (491), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 163/528 (30%), Positives = 255/528 (48%), Gaps = 120/528 (22%)
Query: 197 LDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEII---LQEVKR-------------- 239
++ Q AI AL + ++ GPPGTGKT T++ II L ++ R
Sbjct: 1130 VNEPQAKAIMCALDNNGFTLIQGPPGTGKTKTIIGIISALLVDLSRYHITRPNQQSKSTE 1189
Query: 240 -GSKILACAASNIAVDNIVERL------------VPHRVRLVRLGHPARLLPQV----LE 282
+IL CA SN AVD ++ RL +P R+VR+G+P + V LE
Sbjct: 1190 SKQQILLCAPSNAAVDEVLLRLKRGFLLENGEKYIP---RVVRIGNPETINVSVRDLSLE 1246
Query: 283 SALDAQVLRGDNSSL-------------------------------ASDIRKEMKALNGK 311
+ Q+L + ++ A D+ ++ K+L GK
Sbjct: 1247 YQTEKQLLEVNQGAIDLGSLQELTRWRDTFYDCIQKIEELEKQIDVARDVAEDTKSL-GK 1305
Query: 312 LLKTK--DKNTRREIQKELRTLSKEERKRQQL----AVTDVIKNADVVLTTLTGAVSRKL 365
L+ K +KN + +EL++ S + K L A ++K ADVV TL+G+ +
Sbjct: 1306 ELQNKINEKNLAEQKVEELQSQSFTKNKEVDLLRKKAQKAILKQADVVCATLSGSGHDLV 1365
Query: 366 DNTS--FDLVIIDEAAQALEIACWIALLKGS-RCILAGDHLQLPPTVQSVEAEKKGLGRT 422
++S F VIIDEAAQA+E+ I L G+ +CIL GD QLPPTV S +A ++
Sbjct: 1366 AHSSLNFSTVIIDEAAQAVELDTIIPLRYGAKKCILVGDPNQLPPTVLSKKAASLNYSQS 1425
Query: 423 LFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIK--------------AHPSV 468
LF R+ + +++ +L++QYRMH I ++ SK+ Y+S+++ +P
Sbjct: 1426 LFVRIQKNFSNQMC-LLSIQYRMHPDISHFPSKKFYDSRLEDGDNMAEKTQQVWHVNPKF 1484
Query: 469 AAHMLFDLEGVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQS 528
+ LFD+ G +RTS+T ST N E E + L+
Sbjct: 1485 TQYRLFDVRGKERTSNTM---------------------STYNLEEVEYLVNMVDELLNK 1523
Query: 529 GVHAS---DIGIITPYAAQV-VLLKILRSKDDK--LKNMEVSTVDGFQGREKEAIIISMV 582
+ IG+ITPY +Q+ L + + K K + +++ TVDGFQG+EK+ I S V
Sbjct: 1524 FPDVNFTGRIGVITPYRSQLHELRRAFKVKYGKSFMSTIDIQTVDGFQGQEKDIIFFSCV 1583
Query: 583 RSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIE 630
+S SK +GFL D RR+NVA+TRAR ++ + ET+ +D L++
Sbjct: 1584 KSYSKHGIGFLRDFRRLNVALTRARSSLLIIGNMETLKTDDLWGSLVD 1631
>sp|Q09820|RENT1_SCHPO ATP-dependent helicase upf1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=upf1 PE=3 SV=2
Length = 925
Score = 186 bits (472), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 143/467 (30%), Positives = 233/467 (49%), Gaps = 50/467 (10%)
Query: 197 LDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEII-----LQEVKR--GSKILACAAS 249
L+ SQ +A+ +A+ SK + ++ GPPGTGKT T ++ +Q KR S +L CA S
Sbjct: 393 LNASQSEAV-RAVLSKPLSLIQGPPGTGKTVTSASVVYHLATMQSRKRKSHSPVLVCAPS 451
Query: 250 NIAVDNIVERLVPHRVRLVRLGHPARLLPQVLESALDAQVLRGD--NSSLASDIRKEMKA 307
N+AVD + E++ +R+VR+ +R + +ES++ L N ++++
Sbjct: 452 NVAVDQLAEKIHRTGLRVVRVAAKSR---EDIESSVSFLSLHEQIKNYKFNPELQR---- 504
Query: 308 LNGKLLKTKDKNTRREIQ--KELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVSRKL 365
LLK + +N IQ K+LR L K ++++ A V+ T GA R++
Sbjct: 505 ----LLKLRSENNELSIQDEKKLRILVAAAEK-------ELLRAAHVICCTCVGAGDRRI 553
Query: 366 DNTSFDLVIIDEAAQALEIACWIALLKGSR-CILAGDHLQLPPTVQSVEAEKKGLGRTLF 424
F V+IDEA QA E C I L+ G++ +L GDH QL P V + + L ++LF
Sbjct: 554 SKYKFRSVLIDEATQASEPECMIPLVLGAKQVVLVGDHQQLGPVVMNKKVALASLSQSLF 613
Query: 425 ERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIK----AHPSVAAHMLFDLEGVK 480
ERL L L VQYRMH + + S Y ++ +A H+ F
Sbjct: 614 ERLIILGNSPFR--LVVQYRMHPCLSEFPSNTFYEGTLQNGVTTSERIARHVDFPW---- 667
Query: 481 RTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITP 540
+P L+ A EE S +N EA ++S V IGI+TP
Sbjct: 668 ----IQPDSPLMFYANFGQEELSASGTSFLNRTEASTCEKIVTTFLRSNVLPEQIGIVTP 723
Query: 541 YAAQ-VVLLKILRS----KDDKLKNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSD 595
Y Q +++ +++ + D K +EV++VD FQGREK+ II+S VRS+ + +GF++D
Sbjct: 724 YDGQRSYIVQYMQNNGSMQKDLYKAVEVASVDAFQGREKDFIILSCVRSSEHQGIGFVND 783
Query: 596 RRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEYLSGS 642
RR+NVA+TRA+ ++ + + ++ + + +E + G+
Sbjct: 784 PRRLNVALTRAKYGVIVLGNPKVLAKHALWYHFVLHCKEKGYLVEGT 830
>sp|Q8QHA5|DNA2_XENLA DNA replication ATP-dependent helicase/nuclease DNA2 OS=Xenopus
laevis GN=dna2 PE=1 SV=1
Length = 1053
Score = 182 bits (463), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 167/593 (28%), Positives = 276/593 (46%), Gaps = 92/593 (15%)
Query: 71 KTLLEFQSTKGDVLPAHKFGTHDVVVLKPNKADLGSPALGQGVVYRLKDSSITVAFD--- 127
+ L FQ G V PA + D VV+ + L AL G + +KD +IT D
Sbjct: 497 QYLHSFQRRSGSV-PATNLASGDRVVVSGEERFL---ALSTGYIKEVKDENITCILDRSL 552
Query: 128 -DIPEEGLNSPLRLEKLANEVTYRRMKDALIQLSKGVQNGPAA-GLIPVLFGEQKPTVLK 185
+PE+ L +L +E ++ L LS+ ++N + L ++ KP ++
Sbjct: 553 VKLPED------LLFRLDHEEGGGGLEFHLGNLSRLMENSSVSEKLRKLIIDFSKPNFVQ 606
Query: 186 KDIAFKPFNS---------NLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQE 236
+ P ++ L+ QK A+ + L SK+ ++ G PGTGKTTT+ ++
Sbjct: 607 HLSSILPPDAKDIVASILRGLNKPQKQAMKRVLLSKDYTLIVGMPGTGKTTTICTLVRIL 666
Query: 237 VKRGSKILACAASNIAVDNIVERLVPHRVRLVRLGHPARLLPQVLESALDAQVLRGDNSS 296
G +L + ++ AVDNI+ +L +V +RLG +L P V E + + ++ +
Sbjct: 667 YACGFSVLLTSYTHSAVDNILLKLKKFQVGFLRLGRTQKLHPDVQEFS-EEEICKA---- 721
Query: 297 LASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTT 356
K +++LS A+ ++ + VV TT
Sbjct: 722 -----------------------------KSIKSLS---------ALEELYNSQPVVATT 743
Query: 357 LTGAVSRKLDNTSFDLVIIDEAAQALEIACWIALLKGSRCILAGDHLQLPPTVQSVEAEK 416
G FD I+DEA+Q + C L R +L GDH QLPP V+S EA +
Sbjct: 744 CMGVNHPIFTRRRFDFCIVDEASQISQPICLGPLFFADRFVLVGDHQQLPPLVKSAEARE 803
Query: 417 KGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSVAAHMLFDL 476
G+ +LF+RL E LTVQYRM+ IM S+K +Y +++ ++ + L
Sbjct: 804 LGMSESLFKRLER--NQEAVVQLTVQYRMNSKIMALSNKLVYEGRLECASDRVSNAVVQL 861
Query: 477 EGVK------RTSSTEPTLLLIDI-----AGCDMEEKK------DEEDSTMNEGEAEVAM 519
+K ++ ++ + D+ C + +K +E+ N EA++
Sbjct: 862 PHIKTLLLELEFRESQESMWIKDVLEPSNPVCFLNTEKIPALETEEKGGISNWIEAKLVF 921
Query: 520 AHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSKDDKL--KNMEVSTVDGFQGREKEAI 577
K +++G SDIGII PY Q LK++ + + L +EV+TVD +QGR+K I
Sbjct: 922 HLTKLYLKAGCRPSDIGIIAPYRQQ---LKMISNYFNSLSASAVEVNTVDKYQGRDKSVI 978
Query: 578 IISMVRSNSKKEVG-FLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLI 629
I+S VRSN ++G L D RR+NVA+TRA+ + ++ T++ L++LI
Sbjct: 979 IVSFVRSNIDGKLGDLLKDWRRLNVALTRAKHKLIMLGCVPTLNRFDCLEQLI 1031
>sp|Q98TR3|RENT1_TAKRU Putative regulator of nonsense transcripts 1 OS=Takifugu rubripes
GN=rent1 PE=3 SV=1
Length = 1097
Score = 182 bits (462), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 181/650 (27%), Positives = 299/650 (46%), Gaps = 76/650 (11%)
Query: 17 EFVSVMAPLIDLE-------KEAEISASITSGASRNLDTAQKKGSTILNLKCVDAQTGLM 69
++ ++ PL+ LE KE++ +IT L+ KK L D+ LM
Sbjct: 283 QYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLN---KKRIAYFTLPKTDSDMRLM 339
Query: 70 --GKTLLEFQSTKGDVLPAHKFGTHDVVVLKPNKADLGSPALGQGVVYRLKDSSITVAFD 127
+ L + KGD+ P K H V+ P+ + G + L+ S A
Sbjct: 340 QGDEICLRY---KGDLAPLWKGIGH--VIKVPD-------SYGDEIAIELRTS--VGAPV 385
Query: 128 DIPEEGLNSPLRLEKLANEVTYRRMKDALIQLSKGVQNGPAAGLI-PVLFGEQKPTVLKK 186
+IP +++ + ++ RM+ AL + V +G I L G + V K
Sbjct: 386 EIPHN-----YQVDFVWKSTSFDRMQSALKTFA--VDETSVSGYIYHKLLGHEVEDVTIK 438
Query: 187 DIAFKPFNSN----LDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGS- 241
K F +N L+HSQ A+ K + + + ++ GPPGTGKT T I+ ++G+
Sbjct: 439 CQLPKRFTANGLPDLNHSQVYAV-KTVLQRPLSLIQGPPGTGKTVTSATIVYHLSRQGNG 497
Query: 242 KILACAASNIAVDNIVERLVPHRVRLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDI 301
+L CA SNIAVD + E++ +++VRL +R + +ES + L S++ D
Sbjct: 498 PVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSR---EAIESPVSFLALHNQISNM--DS 552
Query: 302 RKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKR----QQLAVTDVIKNADVVLTTL 357
E++ L ++++ E LS + KR ++ A +++ NADV+ T
Sbjct: 553 MPELQKL-------------QQLKDETGELSSADEKRYRALKRTAERELLMNADVIWCTC 599
Query: 358 TGAVSRKLDNTSFDLVIIDEAAQALEIACWIALLKGSRCILAGDHLQLPPTVQSVEAEKK 417
A +L F ++IDE+ QA E C + G++ ++ G+ V +A K
Sbjct: 600 VRAGDPRLAKMQFRSILIDESTQATEPKCIGPVELGAKQLILGEITASWSCVMCKKAAKA 659
Query: 418 GLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSVAAHML--FD 475
GL ++LFERL L + L VQYRMH + + S Y ++ + + FD
Sbjct: 660 GLSQSLFERLVVLGIRPIR--LQVQYRMHPALSAFPSNIFYEGSLQNGVTAGDRIKKGFD 717
Query: 476 LEGVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDI 535
+ + +P + EE S +N EA RL+++G I
Sbjct: 718 FQWPQ---PEKPMFFYVTQG---QEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQI 771
Query: 536 GIITPYAAQ----VVLLKILRSKDDKLKNMEVSTVDGFQGREKEAIIISMVRSNSKKEVG 591
GIITPY Q V ++ S KL +E+++VD FQGREK+ II+S VR+N + +G
Sbjct: 772 GIITPYEGQRSYLVQYMQFSGSLHTKLYQVEIASVDAFQGREKDFIILSCVRANEHQGIG 831
Query: 592 FLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEYLSG 641
FL+D RR+NVA+TRA+ +V + + +S L+ ++E + G
Sbjct: 832 FLNDPRRLNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEG 881
>sp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2
SV=1
Length = 818
Score = 181 bits (459), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 166/526 (31%), Positives = 231/526 (43%), Gaps = 90/526 (17%)
Query: 193 FNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIIL----------------QE 236
FN NL+ SQK+AI LS K+ ++ GPPGTGKT T++ I+ E
Sbjct: 254 FNENLNKSQKEAIDVGLSRKSFVLIQGPPGTGKTQTILSILGAIMHATPARVQSKGTDHE 313
Query: 237 VKRGSKI--------LACAASNIAVDNIVERLVPH--------------RVRLVRLGHPA 274
VKRG ++ A+ I N + ++P + +V
Sbjct: 314 VKRGIQMTIQEKYNHWGRASPWILGVNPRDAIMPEDGDDGFFPTSGNELKPEVVNASRKY 373
Query: 275 RLLPQVL---ESALDAQVLRGDNSSLASDIRKE-MKALNGKLLKTKDKNTRREIQKELRT 330
RL V SALD VLR L+S +R E + K+++ K L
Sbjct: 374 RLRVLVCAPSNSALDEIVLR----LLSSGLRDENAQTYTPKIVRIGLKAHHSVASVSLDH 429
Query: 331 LSKEER------KRQQLAVTD-------VIKNADVVLTTLTGAVSRKL--DNTSFDLVII 375
L ++R +Q TD +++ A +V TL+ + S L N FD+VII
Sbjct: 430 LVAQKRGSAIDKPKQGTTGTDIDSIRTAILEEAAIVFATLSFSGSALLAKSNRGFDVVII 489
Query: 376 DEAAQALEIACWIALLKGSRC---ILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYG 432
DEAAQA+E A I L +RC L GD QLP TV S A+ G G ++FERL
Sbjct: 490 DEAAQAVEPATLIPL--ATRCKQVFLVGDPKQLPATVISTVAQDSGYGTSMFERLQK--A 545
Query: 433 DEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSVAAHMLFDLEGVKRTSSTEPTLLLI 492
ML QYRMH I ++ SKQ Y ++ + A D +
Sbjct: 546 GYPVKMLKTQYRMHPEIRSFPSKQFYEGALEDGSDIEAQTTRDWHKYRCFGP----FCFF 601
Query: 493 DIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVH---ASDIGIITPYAAQVVLLK 549
DI + S +N E E + RL+ +S + II+PY QV K
Sbjct: 602 DIHEGKESQHPGATGSRVNLDEVEFVLLIYHRLVTMYPELKSSSQLAIISPYNYQVKTFK 661
Query: 550 ILRSKDDKLKNM---------EVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMN 600
D+ K M +++TVDGFQGREK+ I S VR+N ++GFLS+ RRMN
Sbjct: 662 ------DRFKEMFGTEAEKVVDINTVDGFQGREKDVAIFSCVRANENGQIGFLSNSRRMN 715
Query: 601 VAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEYLSGSEYLN 646
V +TRA+ +V T+ SD K LIE E+ S+ LN
Sbjct: 716 VGITRAKSSVLVVGSAATLKSDPLWKNLIESAEQRNRLFKVSKPLN 761
>sp|O94387|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A10.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC29A10.10c PE=3 SV=1
Length = 1944
Score = 181 bits (459), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 168/584 (28%), Positives = 270/584 (46%), Gaps = 100/584 (17%)
Query: 128 DIPEEGLNSPLRLEKLANEVTYRRMKDAL-----IQLSKGVQNGPAAGLIPVLFGEQKPT 182
D+ E N +KL N T R AL + LS+ + + L ++K
Sbjct: 1205 DLQEYAPNIRFTAQKLFNATTSLREFAALKSLRHLPLSQRILDANVTRLPSNFTDDKKQK 1264
Query: 183 VLKKDIAFKPFNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEII---LQEVKR 239
++K + ++ Q AI + + ++ GPPGTGKT T++ +I L +
Sbjct: 1265 IMK--------SYGVNEPQAYAIYASSVNDGFTLIQGPPGTGKTKTILGMIGAVLTSSSQ 1316
Query: 240 G--------------SKILACAASNIAVDNIVERL---------VPHRVRLVRLGHPARL 276
G +KIL CA SN A+D I+ R+ + +++R+G +
Sbjct: 1317 GLQFNVPGQTRKTSKNKILICAPSNAAIDEILLRIKAGVYDHEGIKFFPKVIRVGFGDSI 1376
Query: 277 LPQVLESALDAQVLR---------GDNSSLASDIRKEMKALNGKL---------LKTKDK 318
E L+ Q+++ ++ +SD RK+ ++ K ++ K
Sbjct: 1377 SVHAKEFTLEEQMIKQMELTNLKKDQEANNSSDTRKKYDSIIKKRDSLREDLEKFRSTGK 1436
Query: 319 NTR------REIQKELRTLSK-----EERKRQQLAVTDVIKN---------ADVVLTTLT 358
N+ REI K+ L + ER+R DV+K AD+V TL+
Sbjct: 1437 NSSILEAQLREITKQKNMLEQSLDDMRERQRSTNRNLDVLKKQIQNQLLQEADIVCATLS 1496
Query: 359 GAVSRKLDNT--SFDLVIIDEAAQALEIACWIALLKGSR-CILAGDHLQLPPTVQSVEAE 415
+ L N +F VIIDEAAQA+E++ I L G C++ GD QLPPTV S +
Sbjct: 1497 ASGHELLLNAGLTFRTVIIDEAAQAVELSSIIPLKYGCESCVMVGDPNQLPPTVLSKTSA 1556
Query: 416 KKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSVAAHMLFD 475
K G ++L+ R+ + +E +L++QYRM+ I + SK YNSK+ P+++A
Sbjct: 1557 KFGYSQSLYVRMFKQH-NESACLLSIQYRMNPEISRFPSKFFYNSKLLDGPNMSA----- 1610
Query: 476 LEGVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHAS-- 533
R +P L + E S N EA + +RLIQ ++
Sbjct: 1611 --VTSRPWHEDPQLGIYRFFNVHGTEAFSNSKSLYNVEEASFILLLYERLIQCYLNIDFE 1668
Query: 534 -DIGIITPYAAQVVLLKILRSKDDK------LKNMEVSTVDGFQGREKEAIIISMVRSNS 586
IG++TPY +QV + LRS+ + K++++ TVDGFQG+EK+ II S VRS+
Sbjct: 1669 GKIGVVTPYRSQV---QQLRSQFQRKYGSIIFKHLDIHTVDGFQGQEKDIIIFSCVRSSM 1725
Query: 587 KKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIE 630
+GFL D RR+NVA+TRA+ +V +++ + + LIE
Sbjct: 1726 SGGIGFLQDLRRLNVALTRAKSSLYIVGNSKPLMQEDIFYSLIE 1769
>sp|P38859|DNA2_YEAST DNA replication ATP-dependent helicase/nuclease DNA2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DNA2 PE=1 SV=1
Length = 1522
Score = 177 bits (450), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 141/461 (30%), Positives = 228/461 (49%), Gaps = 69/461 (14%)
Query: 194 NSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAV 253
++ L+ +QK+AI K + +++ ++ G PGTGKTT + EII V G ++L + ++ AV
Sbjct: 1049 DTTLNLNQKEAIDKVMRAEDYALILGMPGTGKTTVIAEIIKILVSEGKRVLLTSYTHSAV 1108
Query: 254 DNIVERLVPHRVRLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLL 313
DNI+ +L + ++RLG ++ P D Q + +S+ K+ N L
Sbjct: 1109 DNILIKLRNTNISIMRLGMKHKVHP-------DTQKYVPNYASV--------KSYNDYLS 1153
Query: 314 KTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGA--VSRKLDNTSFD 371
K I + VV TT G + L+ FD
Sbjct: 1154 K--------------------------------INSTSVVATTCLGINDILFTLNEKDFD 1181
Query: 372 LVIIDEAAQALEIACWIALLKGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLY 431
VI+DEA+Q L G+R I+ GDH QLPP V++ A GL +LF+ + +
Sbjct: 1182 YVILDEASQISMPVALGPLRYGNRFIMVGDHYQLPPLVKNDAARLGGLEESLFKTFCEKH 1241
Query: 432 GDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSVAAHMLFDL---EGVKRTSST--- 485
+ V LT+QYRM I+ S+ +Y++K+K + +L E + R +
Sbjct: 1242 PESVAE-LTLQYRMCGDIVTLSNFLIYDNKLKCGNNEVFAQSLELPMPEALSRYRNESAN 1300
Query: 486 ---------EPT--LLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASD 534
EPT ++ ++ C ++ E+D+ N GEAE+ + + ++ SGV D
Sbjct: 1301 SKQWLEDILEPTRKVVFLNYDNCPDIIEQSEKDNITNHGEAELTLQCVEGMLLSGVPCED 1360
Query: 535 IGIITPYAAQVVLLKILRSKDDKLKNMEVSTVDGFQGREKEAIIISMVRSNSKKEVG-FL 593
IG++T Y AQ+ LLK + +K + +E+ T D FQGR+K+ IIISMVR NS+ G L
Sbjct: 1361 IGVMTLYRAQLRLLKKIFNK-NVYDGLEILTADQFQGRDKKCIIISMVRRNSQLNGGALL 1419
Query: 594 SDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEE 634
+ RR+NVA+TRA+ + ++ T+ S +K + EE
Sbjct: 1420 KELRRVNVAMTRAKSKLIIIGSKSTIGSVPEIKSFVNLLEE 1460
>sp|O76512|RENT1_CAEEL Regulator of nonsense transcripts 1 OS=Caenorhabditis elegans
GN=smg-2 PE=1 SV=1
Length = 1069
Score = 177 bits (448), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 137/448 (30%), Positives = 223/448 (49%), Gaps = 37/448 (8%)
Query: 197 LDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRG-SKILACAASNIAVDN 255
L+ SQ A+ + L+ + + ++ GPPGTGKT I+ V++ +L C+ SNIAVD+
Sbjct: 446 LNSSQMQAVKQVLT-RPLSLIQGPPGTGKTVVSATIVYHLVQKTEGNVLVCSPSNIAVDH 504
Query: 256 IVERLVPHRVRLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNG----K 311
+ E++ +++VRL +R + L Q ++K + G K
Sbjct: 505 LAEKIHKTGLKVVRLCARSREHSETTVPYLTLQ--------------HQLKVMGGAELQK 550
Query: 312 LLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVSRKLDNTSFD 371
L++ KD+ E + +LR + + K +L + ADV+ T + A +L
Sbjct: 551 LIQLKDEAGELEFKDDLRYMQLKRVKEHEL-----LAAADVICCTCSSAADARLSKIRTR 605
Query: 372 LVIIDEAAQALEIACWIALLKGSR-CILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADL 430
V+IDE+ QA E +++++G R +L GDH QL P V +A GL ++LFERL L
Sbjct: 606 TVLIDESTQATEPEILVSIMRGVRQLVLVGDHCQLGPVVICKKAAIAGLSQSLFERLV-L 664
Query: 431 YGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSVAAHMLFDLEGVKRTSSTEPTLL 490
G L VQYRMH + + S Y+ ++ + + ++ +P
Sbjct: 665 LGIR-PFRLQVQYRMHPVLSEFPSNVFYDGSLQNGVTENDRHMTGVDW-HWPKPNKPAFF 722
Query: 491 LIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQ----VV 546
+G EE S +N EA +LI++GV IG+IT Y Q V
Sbjct: 723 W-HCSGS--EELSASGTSFLNRTEAANVEKLVSKLIKAGVQPHQIGVITSYEGQRSFIVN 779
Query: 547 LLKILRSKDDKL-KNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTR 605
+ + + KL +N+E+++VD FQGREK+ II++ VRSN +GFLSD RR+NVA+TR
Sbjct: 780 YMHTQGTLNSKLYENVEIASVDAFQGREKDYIIVTCVRSNDILGIGFLSDPRRLNVAITR 839
Query: 606 ARRQCCLVCDTETVSSDGFLKRLIEYFE 633
A+ LV + + ++ LI +++
Sbjct: 840 AKYGLVLVGNAKVLARHDLWHELINHYK 867
>sp|D3ZG52|DNA2_RAT DNA replication ATP-dependent helicase/nuclease DNA2 OS=Rattus
norvegicus GN=Dna2 PE=3 SV=1
Length = 1059
Score = 174 bits (440), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 165/599 (27%), Positives = 265/599 (44%), Gaps = 96/599 (16%)
Query: 70 GKTLLEFQSTKGDVLPAHKFGTHDVVVLKPNKADLGSPALGQGVVYRLKDSSITVAFD-- 127
G L FQ G +PA D ++L + L AL +G V R+ +++T D
Sbjct: 494 GHYLHNFQRKNGP-MPATNLMAGDRIILSGEERKLF--ALSKGYVKRIDTAAVTCLLDRN 550
Query: 128 --DIPEEGL------------NSPL-RLEKLA-NEVTYRRMKDALIQLSKGVQNGPAAGL 171
+PE L N+PL L KL N + +R+++ +I + + +
Sbjct: 551 LSTLPETTLFRLDREEKHGDINTPLGNLSKLMENTDSSKRLRELIIDFKEPQFIAYLSSV 610
Query: 172 IPVLFGEQKPTVLKKDIAFKPFNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVE 231
+P + +LK L+ Q+ A+ K L SK+ ++ G PGTGKTTT+
Sbjct: 611 LPHDAKDTVANILK----------GLNKPQRQAMKKVLLSKDYTLIVGMPGTGKTTTICA 660
Query: 232 IILQEVKRGSKILACAASNIAVDNIVERLVPHRVRLVRLGHPARLLPQVLESALDAQVLR 291
++ G +L + ++ AVDNI+ +L ++ +RLG ++ P +
Sbjct: 661 LVRILSACGFSVLLTSYTHSAVDNILLKLAKFKIGFLRLGQSHKVHPDI----------- 709
Query: 292 GDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNAD 351
K T E+ + LR+++ LA + + N+
Sbjct: 710 -------------------------QKFTEEEMCR-LRSIA-------SLAHLEELYNSH 736
Query: 352 -VVLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIACWIALLKGSRCILAGDHLQLPPTVQ 410
VV TT G +FD I+DEA+Q + C L R +L GDH QLPP V
Sbjct: 737 PVVATTCMGISHPMFSRKTFDFCIVDEASQISQPICLGPLFFSRRFVLVGDHKQLPPLVL 796
Query: 411 SVEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSVAA 470
+ EA G+ +LF+RL + LT+QYRM+ IM+ S+K Y K++ A
Sbjct: 797 NREARALGMSESLFKRLER--NESAVVQLTIQYRMNRKIMSLSNKLTYEGKLECGSDRVA 854
Query: 471 HMLFDLEGVKRT-------SSTEPTLLLI---DIAGCDMEEKK------DEEDSTMNEGE 514
+ + L +K S P L + D C + K E N E
Sbjct: 855 NAVITLPNLKDVRLEFYADYSDNPWLAGVFEPDNPVCFLNTDKVPAPEQIENGGVSNVTE 914
Query: 515 AEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSKDDKLKNMEVSTVDGFQGREK 574
A + + I++G SDIGII PY Q+ + L ++ + +EV+TVD +QGR+K
Sbjct: 915 ARLIVFLTSTFIKAGCSPSDIGIIAPYRQQLRTITDLLARSS-VGMVEVNTVDKYQGRDK 973
Query: 575 EAIIISMVRSNSKKEVG-FLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYF 632
I++S VRSN +G L D RR+NVA+TRA+ + L+ ++ L++L ++
Sbjct: 974 SLILVSFVRSNEDGTLGELLKDWRRLNVAITRAKHKLILLGSVSSLKRFPPLEKLFDHL 1032
>sp|E1BMP7|DNA2_BOVIN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Bos taurus
GN=DNA2 PE=3 SV=3
Length = 1061
Score = 172 bits (436), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 164/600 (27%), Positives = 267/600 (44%), Gaps = 96/600 (16%)
Query: 70 GKTLLEFQSTKGDVLPAHKFGTHDVVVLKPNKADLGSPALGQGVVYRLKDSSITVAFD-- 127
G+ L FQ G +P D ++L + L AL +G V + +++T + D
Sbjct: 494 GQYLHNFQRKNG-AIPITNLMAGDRIILSGEERTLF--ALSRGYVKEINSTTVTCSLDRN 550
Query: 128 --DIPEEGL------------NSPL-RLEKLA-NEVTYRRMKDALIQLSKGVQNGPAAGL 171
+PE L ++PL L KL N ++++D +I + + +
Sbjct: 551 LSGLPESTLFRLDQEEKNCDIDTPLGNLSKLMENTRASQKLRDLIIDFREPQFISYLSSV 610
Query: 172 IPVLFGEQKPTVLKKDIAFKPFNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVE 231
+P + +LK L+ Q+ A+ K L SK+ ++ G PGTGKTTT+
Sbjct: 611 LPHEAKDTVACILK----------GLNKPQRQAMKKVLLSKDYTLIVGMPGTGKTTTICT 660
Query: 232 IILQEVKRGSKILACAASNIAVDNIVERLVPHRVRLVRLGHPARLLPQVLESALDAQVLR 291
++ G +L + ++ AVDNI+ +L ++ +RLG ++ P
Sbjct: 661 LVRILYACGFSVLLTSYTHSAVDNILLKLAKFKIGFLRLGQIQKVHP------------- 707
Query: 292 GDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNAD 351
DI+K T+++ R + K L L EE QL
Sbjct: 708 --------DIQK----------FTEEEICRSKSIKSLALL--EELYNSQL---------- 737
Query: 352 VVLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIACWIALLKGSRCILAGDHLQLPPTVQS 411
+V TT G +FD I+DEA+Q + C L R +L GDH QLPP V +
Sbjct: 738 IVATTCMGINHPIFSRKTFDFCIVDEASQISQPVCLGPLFFSRRFVLVGDHQQLPPLVLN 797
Query: 412 VEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSVAAH 471
EA G+ +LF+RL LTVQYRM+ IM+ S+K Y K++ A+
Sbjct: 798 REARALGMSESLFKRLEQ--NKNAVVQLTVQYRMNSKIMSLSNKLTYEGKLECGSDKVAN 855
Query: 472 MLFDLEGVKRTS---------STEPTLLLI---DIAGCDMEEKKDEEDSTMNEG------ 513
+ +L K S P L+ + C + K + +G
Sbjct: 856 AVINLPNFKDVKLELEFYADYSENPWLIAAFEPNNPVCFLNTHKVPAPEQVEKGGVSNIM 915
Query: 514 EAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSKDDKLKNMEVSTVDGFQGRE 573
EA++ + I++G SDIGII PY Q+ ++ L ++ + +EV+TVD +QGR+
Sbjct: 916 EAKLVVFLTSVFIKAGCKPSDIGIIAPYRQQLKVISDLLAQSS-VGMVEVNTVDRYQGRD 974
Query: 574 KEAIIISMVRSNSKKEVG-FLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYF 632
K +++S VRSN +G L D RR+NVA+TRA+ + L+ ++S L++L+ +
Sbjct: 975 KSIVVVSFVRSNEDGTLGELLKDWRRLNVAITRAKHKLILLGCVPSLSRYPPLRKLLNHL 1034
>sp|P51530|DNA2_HUMAN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Homo sapiens
GN=DNA2 PE=1 SV=3
Length = 1060
Score = 169 bits (428), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 168/621 (27%), Positives = 275/621 (44%), Gaps = 98/621 (15%)
Query: 50 QKKGSTILNL-KCVDAQTGLMGKTLLEFQSTKGDVLPAHKFGTHDVVVLKPNKADLGSPA 108
+K GS I NL + + G+ L FQ G +P D V++ + L A
Sbjct: 473 EKSGSCIGNLIRMEHVKIVCDGQYLHNFQCKHG-AIPVTNLMAGDRVIVSGEERSLF--A 529
Query: 109 LGQGVVYRLKDSSITVAFDD----IPEEGL------------NSPL-RLEKLA-NEVTYR 150
L +G V + +++T D +PE L ++PL L KL N +
Sbjct: 530 LSRGYVKEINMTTVTCLLDRNLSVLPESTLFRLDQEEKNCDIDTPLGNLSKLMENTFVSK 589
Query: 151 RMKDALIQLSKGVQNGPAAGLIPVLFGEQKPTVLKKDIAFKPFNSNLDHSQKDAISKALS 210
+++D +I + + ++P + +LK L+ Q+ A+ K L
Sbjct: 590 KLRDLIIDFREPQFISYLSSVLPHDAKDTVACILK----------GLNKPQRQAMKKVLL 639
Query: 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVRLVRL 270
SK+ ++ G PGTGKTTT+ ++ G +L + ++ AVDNI+ +L ++ +RL
Sbjct: 640 SKDYTLIVGMPGTGKTTTICTLVRILYACGFSVLLTSYTHSAVDNILLKLAKFKIGFLRL 699
Query: 271 GHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRT 330
G ++ P + + + ++ R K +K+L LL
Sbjct: 700 GQIQKVHPAI-QQFTEQEICRS----------KSIKSL--ALL----------------- 729
Query: 331 LSKEERKRQQLAVTDVIKNADVVLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIACWIAL 390
EE QL +V TT G FD I+DEA+Q + C L
Sbjct: 730 ---EELYNSQL----------IVATTCMGINHPIFSRKIFDFCIVDEASQISQPICLGPL 776
Query: 391 LKGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIM 450
R +L GDH QLPP V + EA G+ +LF+RL LTVQYRM+ IM
Sbjct: 777 FFSRRFVLVGDHQQLPPLVLNREARALGMSESLFKRLEQ--NKSAVVQLTVQYRMNSKIM 834
Query: 451 NWSSKQLYNSKIKAHPSVAAHMLFDLEGVKRTS---------STEPTLLLI---DIAGCD 498
+ S+K Y K++ A+ + +L K S P L+ + + C
Sbjct: 835 SLSNKLTYEGKLECGSDKVANAVINLRHFKDVKLELEFYADYSDNPWLMGVFEPNNPVCF 894
Query: 499 MEEKK------DEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILR 552
+ K E+ N EA++ + +++G SDIGII PY Q+ ++ L
Sbjct: 895 LNTDKVPAPEQVEKGGVSNVTEAKLIVFLTSIFVKAGCSPSDIGIIAPYRQQLKIINDLL 954
Query: 553 SKDDKLKNMEVSTVDGFQGREKEAIIISMVRSNSKKEVG-FLSDRRRMNVAVTRARRQCC 611
++ + +EV+TVD +QGR+K +++S VRSN VG L D RR+NVA+TRA+ +
Sbjct: 955 ARS--IGMVEVNTVDKYQGRDKSIVLVSFVRSNKDGTVGELLKDWRRLNVAITRAKHKLI 1012
Query: 612 LVCDTETVSSDGFLKRLIEYF 632
L+ +++ L++L+ +
Sbjct: 1013 LLGCVPSLNCYPPLEKLLNHL 1033
>sp|Q6ZQJ5|DNA2_MOUSE DNA replication ATP-dependent helicase/nuclease DNA2 OS=Mus musculus
GN=Dna2 PE=2 SV=2
Length = 1062
Score = 167 bits (424), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 160/575 (27%), Positives = 258/575 (44%), Gaps = 84/575 (14%)
Query: 70 GKTLLEFQSTKGDVLPAHKFGTHDVVVLKPNKADLGSPALGQGVVYRLKDSSITVAFD-D 128
G+ L FQ G +PA D ++L + L AL +G V ++ +++T D +
Sbjct: 495 GQYLHNFQRKNGP-MPATNLMAGDRIILSGEERKLF--ALSKGYVKKMNKAAVTCLLDRN 551
Query: 129 IPEEGLNSPLRLEKLANEVTYRRMKDALIQLSKGVQN-GPAAGLIPVLFGEQKPTVLKKD 187
+ + RL++ E + + L LSK +++ P+ L ++ ++P +
Sbjct: 552 LSTLPATTVFRLDR---EERHGDISTPLGNLSKLMESTDPSKRLRELIIDFREPQFIAYL 608
Query: 188 IAFKPFNS---------NLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK 238
+ P ++ L+ Q+ A+ + L SK+ ++ G PGTGKTTT+ ++
Sbjct: 609 SSVLPHDAKDTVANILKGLNKPQRQAMKRVLLSKDYTLIVGMPGTGKTTTICALVRILSA 668
Query: 239 RGSKILACAASNIAVDNIVERLVPHRVRLVRLGHPARLLPQVLESALDAQVLRGDNSSLA 298
G +L + ++ AVDNI+ +L +V +RLG ++ P +
Sbjct: 669 CGFSVLLTSYTHSAVDNILLKLAKFKVGFLRLGQSHKVHPDI------------------ 710
Query: 299 SDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNAD-VVLTTL 357
K T EI + R LA + + N+ +V TT
Sbjct: 711 ------------------QKFTEEEICRS--------RSIASLAHLEELYNSHPIVATTC 744
Query: 358 TGAVSRKLDNTSFDLVIIDEAAQALEIACWIALLKGSRCILAGDHLQLPPTVQSVEAEKK 417
G +FD I+DEA+Q + C L R +L GDH QLPP V + EA
Sbjct: 745 MGINHPIFSRKTFDFCIVDEASQISQPVCLGPLFFSRRFVLVGDHQQLPPLVVNREARAL 804
Query: 418 GLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSVAAHMLFDLE 477
G+ +LF+RL + LTVQYRM+ IM+ S+K Y K++ A+ + L
Sbjct: 805 GMSESLFKRLER--NESAVVQLTVQYRMNRKIMSLSNKLTYAGKLECGSDRVANAVLALP 862
Query: 478 GVK--RTS-------STEPTL---LLIDIAGCDMEEKK------DEEDSTMNEGEAEVAM 519
+K R S S P L L D C + K E N EA + +
Sbjct: 863 NLKDARLSLQLYADYSDSPWLAGVLEPDNPVCFLNTDKVPAPEQVENGGVSNVTEARLIV 922
Query: 520 AHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSKDDKLKNMEVSTVDGFQGREKEAIII 579
I++G SDIG+I PY Q+ ++ L ++ + +EV+TVD +QGR+K I++
Sbjct: 923 FLTSTFIKAGCSPSDIGVIAPYRQQLRIISDLLARSS-VGMVEVNTVDKYQGRDKSLILV 981
Query: 580 SMVRSNSKKEVG-FLSDRRRMNVAVTRARRQCCLV 613
S VRSN +G L D RR+NVA+TRA+ + L+
Sbjct: 982 SFVRSNEDGTLGELLKDWRRLNVALTRAKHKLILL 1016
>sp|Q5ZKG3|DNA2_CHICK DNA replication ATP-dependent helicase/nuclease DNA2 OS=Gallus
gallus GN=DNA2 PE=2 SV=2
Length = 992
Score = 165 bits (418), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 152/540 (28%), Positives = 246/540 (45%), Gaps = 101/540 (18%)
Query: 109 LGQGVVYRLK----DSSITVAFDDIPEEGLNSPLRLEKLANEVTYRRMKDALIQLSKGVQ 164
L + +RL D SI V F+++ + +SP+ EKL N + + LS
Sbjct: 523 LPESTTFRLDHEEGDCSIGVPFENLSKLMKDSPVS-EKLRNLIIDFHKPRFIQHLS---- 577
Query: 165 NGPAAGLIPVLFGEQKPTVLKKDIAFKPFNSNLDHSQKDAISKALSSKNVFMLHGPPGTG 224
++P E ++LK L+ QK A+ + L S++ ++ G PGTG
Sbjct: 578 -----SVLPPEAKEAVASILK----------GLNKPQKQAMKQVLLSRDYTLIVGMPGTG 622
Query: 225 KTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVRLVRLGHPARLLPQVLESA 284
KTTT+ ++ G +L + ++ AVDNI+ +L +V +RLG ++ P
Sbjct: 623 KTTTICALVRILSACGFSVLLTSFTHTAVDNILLKLAKFKVGFLRLGRAQKVHP------ 676
Query: 285 LDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEE--RKRQQLA 342
DIRK ++EE R + +
Sbjct: 677 ---------------DIRK---------------------------FTEEEICRSKSIKS 694
Query: 343 VTDV---IKNADVVLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIACWIALLKGSRCILA 399
VTD+ + VV T G FD I+DEA+Q + C L R +L
Sbjct: 695 VTDLEELYNSQPVVATACMGINHPIFVQKQFDFCIVDEASQISQPICLGPLFCSKRFVLV 754
Query: 400 GDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYN 459
GDH QLPP VQ+ EA G+ +LF+RL LTVQYRM+ IM+ S+K +Y
Sbjct: 755 GDHQQLPPLVQNSEARDLGMSESLFKRLEQ--NQNAVVQLTVQYRMNSKIMSLSNKLVYE 812
Query: 460 SKIKAHPSVAAHMLFDLEGVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAM 519
K++ E V ++ P L ++ + D + +E + E + V
Sbjct: 813 GKLECGS----------EKVSNATANLPNLKMLKLEFADASKTWLKE---VLEPDKPVCF 859
Query: 520 AHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSKDDKLK--NMEVSTVDGFQGREKEAI 577
+ ++ +G SDIGII+PY Q LK++ +LK +EV+T+D +QGR+K I
Sbjct: 860 LNTEK---AGCRPSDIGIISPYRHQ---LKVITDLMARLKENRVEVNTIDKYQGRDKSII 913
Query: 578 IISMVRSNSKKEVG-FLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHA 636
I+S VR+++ + +G L D RR+NVA+TRA+ + +V ++ L++L+ + + A
Sbjct: 914 IVSFVRNSNDENLGALLKDWRRLNVAITRAKHKLIMVGCVPSLRRYPPLEKLLCHLQSEA 973
>sp|Q7Z333|SETX_HUMAN Probable helicase senataxin OS=Homo sapiens GN=SETX PE=1 SV=4
Length = 2677
Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 155/520 (29%), Positives = 245/520 (47%), Gaps = 98/520 (18%)
Query: 196 NLDHSQKDAISKAL-------SSKNVFMLHGPPGTGKTTTVVEII---LQEVKRG----- 240
+ + QK AI A S + ++HGPPGTGK+ T+V ++ L E +R
Sbjct: 1933 DFNEDQKKAIETAYAMVKHSPSVAKICLIHGPPGTGKSKTIVGLLYRLLTENQRKGHSDE 1992
Query: 241 --------SKILACAASNIAVDNIVERLVPH----------------RVRLVRLGHPARL 276
+++L CA SN AVD ++++++ + LVRLG +
Sbjct: 1993 NSNAKIKQNRVLVCAPSNAAVDELMKKIILEFKEKCKDKKNPLGNCGDINLVRLGPEKSI 2052
Query: 277 LPQVLESALDAQVLRGDNSSLASDI-----RKEMKALNGKLLKTKDKNTR--REIQKEL- 328
+VL+ +LD+QV L S + RKE L + R REIQ++
Sbjct: 2053 NSEVLKFSLDSQVNHRMKKELPSHVQAMHKRKEFLDYQLDELSRQRALCRGGREIQRQEL 2112
Query: 329 -RTLSKEERKRQQLAV-------------TDVIKNADVVLTTLTGA-------VSRKLDN 367
+SK ++RQ+LA + +I + ++ TL+ + R
Sbjct: 2113 DENISKVSKERQELASKIKEVQGRPQKTQSIIILESHIICCTLSTSGGLLLESAFRGQGG 2172
Query: 368 TSFDLVIIDEAAQALEIACWIALL-KGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFER 426
F VI+DEA Q+ EI L+ + ++ IL GD QLPPTV S++A++ G +++ R
Sbjct: 2173 VPFSCVIVDEAGQSCEIETLTPLIHRCNKLILVGDPKQLPPTVISMKAQEYGYDQSMMAR 2232
Query: 427 LADLYGDEVTS---------MLTVQYRMHEHIMNWSSKQLYNSKIKAHPSVAAHMLFDLE 477
L + V LTVQYRMH I + S +YN +K + A
Sbjct: 2233 FCRLLEENVEHNMISRLPILQLTVQYRMHPDICLFPSNYVYNRNLKTNRQTEA------- 2285
Query: 478 GVKRTSSTEP--TLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQS---GVHA 532
R SS P L+ D+ D E++D DS +N E ++ M K LI+ V
Sbjct: 2286 --IRCSSDWPFQPYLVFDVG--DGSERRDN-DSYINVQEIKLVMEIIK-LIKDKRKDVSF 2339
Query: 533 SDIGIITPYAAQVVLL-KILRSKDDKLKNMEVSTVDGFQGREKEAIIISMVRSNS-KKEV 590
+IGIIT Y AQ ++ K L + D+ EV TVD FQGR+K+ +I++ VR+NS + +
Sbjct: 2340 RNIGIITHYKAQKTMIQKDLDKEFDRKGPAEVDTVDAFQGRQKDCVIVTCVRANSIQGSI 2399
Query: 591 GFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIE 630
GFL+ +R+NV +TRA+ ++ T+ + +LI+
Sbjct: 2400 GFLASLQRLNVTITRAKYSLFILGHLRTLMENQHWNQLIQ 2439
>sp|A2AKX3|SETX_MOUSE Probable helicase senataxin OS=Mus musculus GN=Setx PE=2 SV=1
Length = 2646
Score = 162 bits (410), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 143/496 (28%), Positives = 238/496 (47%), Gaps = 96/496 (19%)
Query: 196 NLDHSQKDAISKAL-------SSKNVFMLHGPPGTGKTTTVVEII---LQEVKRG----- 240
+ + QK AI A S + ++HGPPGTGK+ T+V ++ L E +R
Sbjct: 1909 DFNEDQKKAIETAYAMVKHSPSVAKICLIHGPPGTGKSKTIVGLLYRLLTENQRKGHSDE 1968
Query: 241 --------SKILACAASNIAVDNIVERLVPH----------------RVRLVRLGHPARL 276
+++L CA SN AVD ++++++ + LVRLG +
Sbjct: 1969 NFNAKIKQNRVLVCAPSNAAVDELMKKIILEFKEKCKDKKNPLGNCGDINLVRLGPEKSI 2028
Query: 277 LPQVLESALDAQV---LRGDNSSLASDIRKEMKALNGKL---------LKTKDKNTRREI 324
+VL+ +LD+QV ++ D S ++ + + L+ +L + + R+E+
Sbjct: 2029 NTEVLKFSLDSQVNHRMKKDLPSHIQEMLRRKEILDAQLDELSRQRALCRGGREMQRQEL 2088
Query: 325 QKELRTLSKEERK----------RQQLAVTDVIKNADVVLTTLTGA-------VSRKLDN 367
+ + +SKE ++ R Q A +I + V+ TL+ + R
Sbjct: 2089 DEHIAIVSKERQELASKIKEVQGRPQRAQNTIILESHVICCTLSTSGGLLLESAFRGQGG 2148
Query: 368 TSFDLVIIDEAAQALEIACWIALL-KGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFER 426
F VI+DEA Q+ E+ L+ + ++ IL GD QLPPTV S++A++ G +++ R
Sbjct: 2149 VPFSCVIVDEAGQSCEVETLSPLIHRCNKLILVGDPKQLPPTVISMKAQEYGYDQSMMAR 2208
Query: 427 LADLYGDEVTS---------MLTVQYRMHEHIMNWSSKQLYNSKIKAHPSVAAHMLFDLE 477
L + V LT+QYRMH I + S +YN +K + L
Sbjct: 2209 FCKLLEENVEQNMIGRLPVLQLTIQYRMHPDICLFPSNYVYNKNLKTN---------RLT 2259
Query: 478 GVKRTSSTEP--TLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQS--GVHAS 533
R SS P L+ D+ D E++D DS +N E ++ M K + + +
Sbjct: 2260 ESIRCSSEWPFQPYLVFDVG--DGSERRDN-DSYINVQEIKLVMEIIKLIKEKRKDISFR 2316
Query: 534 DIGIITPYAAQVVLL-KILRSKDDKLKNMEVSTVDGFQGREKEAIIISMVRSNS-KKEVG 591
+IGIIT Y AQ ++ K L + DK EV TVD FQGR+K+ II++ VR+++ + +G
Sbjct: 2317 NIGIITHYKAQKTMIQKDLEKEFDKKGPAEVDTVDAFQGRQKDCIIVTCVRASAVQGSIG 2376
Query: 592 FLSDRRRMNVAVTRAR 607
FL+ +R+NV +TRA+
Sbjct: 2377 FLASLQRLNVTITRAK 2392
>sp|Q00416|SEN1_YEAST Helicase SEN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SEN1 PE=1 SV=2
Length = 2231
Score = 160 bits (405), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 150/524 (28%), Positives = 239/524 (45%), Gaps = 103/524 (19%)
Query: 197 LDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEII----------------------- 233
L+ SQ +AI ++S + ++ GPPGTGKT T++ II
Sbjct: 1335 LNTSQAEAIVNSVSKEGFSLIQGPPGTGKTKTILGIIGYFLSTKNASSSNVIKVPLEKNS 1394
Query: 234 --LQEVKRGSKILACAASNIAVDNIVERLVP-------HRVR--LVRLGHP--------- 273
+++ + KIL CA SN AVD I RL H+ + LVR+G
Sbjct: 1395 SNTEQLLKKQKILICAPSNAAVDEICLRLKSGVYDKQGHQFKPQLVRVGRSDVVNVAIKD 1454
Query: 274 --------ARLLPQVLESALDAQVLRGDNSSLAS--DIRKEMKALNGKLLKTKDKNTRRE 323
R+ + E D ++ R N+++ ++R ++ + +G +
Sbjct: 1455 LTLEELVDKRIGERNYEIRTDPELERKFNNAVTKRRELRGKLDSESGNPESPMSTEDISK 1514
Query: 324 IQKELRTLSK----------EERKRQQL-----------AVTDVIKNADVVLTTLTGAVS 362
+Q ++R LSK E R++ + A ++ +D++ +TL+G+
Sbjct: 1515 LQLKIRELSKIINELGRDRDEMREKNSVNYRNRDLDRRNAQAHILAVSDIICSTLSGSAH 1574
Query: 363 RKLDNTS--FDLVIIDEAAQALEIACWIAL-LKGSRCILAGDHLQLPPTVQSVEAEKKGL 419
L FD VIIDEA Q E++ I L G RCI+ GD QLPPTV S A
Sbjct: 1575 DVLATMGIKFDTVIIDEACQCTELSSIIPLRYGGKRCIMVGDPNQLPPTVLSGAASNFKY 1634
Query: 420 GRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSVAAHMLFDLEGV 479
++LF R+ + +L VQYRMH I + S + Y ++K P + D+
Sbjct: 1635 NQSLFVRMEK---NSSPYLLDVQYRMHPSISKFPSSEFYQGRLKDGPGM------DILNK 1685
Query: 480 KRTSSTEP--TLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASD--- 534
+ EP DI +E+ + S N E VA+ L + + D
Sbjct: 1686 RPWHQLEPLAPYKFFDIIS-GRQEQNAKTMSYTNMEEIRVAIELVDYLFRKFDNKIDFTG 1744
Query: 535 -IGIITPYAAQVVLLKILRSKDDKL------KNMEVSTVDGFQGREKEAIIISMVRS-NS 586
IGII+PY Q ++ +R + + K+++ +T+DGFQG+EKE I+IS VR+ ++
Sbjct: 1745 KIGIISPYREQ---MQKMRKEFARYFGGMINKSIDFNTIDGFQGQEKEIILISCVRADDT 1801
Query: 587 KKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIE 630
K VGFL D RRMNVA+TRA+ ++ +++ + LIE
Sbjct: 1802 KSSVGFLKDFRRMNVALTRAKTSIWVLGHQRSLAKSKLWRDLIE 1845
>sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=1
SV=1
Length = 1002
Score = 153 bits (386), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 141/465 (30%), Positives = 221/465 (47%), Gaps = 70/465 (15%)
Query: 190 FKPFNSNLDHSQKDAISKALSSKNV--FMLHGPPGTGKTTTVVEIILQ--EVKRGSKILA 245
F P + L+ Q +I L K +++HGPPGTGKT T+VE I+Q +R +++L
Sbjct: 390 FVPISPALNAEQICSIEMVLGCKGAPPYVIHGPPGTGKTMTLVEAIVQLYTTQRNARVLV 449
Query: 246 CAASNIAVDNIVER-LVPHRVRLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRKE 304
CA SN A D+I+E+ L VR+ D ++ R L + R
Sbjct: 450 CAPSNSAADHILEKLLCLEGVRIK-----------------DNEIFR-----LNAATR-- 485
Query: 305 MKALNGKLLKTKDKNTRREIQKEL-RTLSKEERKRQQLAVTDVIKNADVVLTTLTGAV-- 361
+ EI+ E+ R +E + + + + VV T ++ ++
Sbjct: 486 ---------------SYEEIKPEIIRFCFFDELIFKCPPLKALTRYKLVVSTYMSASLLN 530
Query: 362 SRKLDNTSFDLVIIDEAAQALEIACWIAL----LKGSRCILAGDHLQLPPTVQSVEAEKK 417
+ ++ F +++DEA QA E IA+ L + +LAGD QL P + S +AE
Sbjct: 531 AEGVNRGHFTHILLDEAGQASEPENMIAVSNLCLTETVVVLAGDPRQLGPVIYSRDAESL 590
Query: 418 GLGRTLFERL--ADLY--GDE-VTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSVAAHM 472
GLG++ ERL D Y GDE + L YR H I++ SK Y+ ++ A +
Sbjct: 591 GLGKSYLERLFECDYYCEGDENYVTKLVKNYRCHPEILDLPSKLFYDGELVASKEDTDSV 650
Query: 473 LFDLEGVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSG-VH 531
L L + + E ++ I GCD E++ S N E + KRL + V
Sbjct: 651 LASLNFL---PNKEFPMVFYGIQGCD--EREGNNPSWFNRIEISKVIETIKRLTANDCVQ 705
Query: 532 ASDIGIITPYAAQVVLLKILRSKDDKLKNMEVSTVDGFQGREKEAIIISMVRSNSKKE-- 589
DIG+ITPY QV+ +K + + D + ++V +V+ FQG+EK+ IIIS VRS K
Sbjct: 706 EEDIGVITPYRQQVMKIKEVLDRLD-MTEVKVGSVEQFQGQEKQVIIISTVRSTIKHNEF 764
Query: 590 -----VGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLI 629
+GFLS+ RR NVA+TRA ++ + + D +L+
Sbjct: 765 DRAYCLGFLSNPRRFNVAITRAISLLVIIGNPHIICKDMNWNKLL 809
>sp|P32644|ECM32_YEAST Putative ATP-dependent RNA helicase ECM32 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ECM32 PE=1 SV=1
Length = 1121
Score = 146 bits (368), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 160/528 (30%), Positives = 244/528 (46%), Gaps = 102/528 (19%)
Query: 171 LIPVLFGEQKPTVLKKDIAFK---PFNSN-LDHSQKDAISKALSSKNVFMLHGPPGTGKT 226
I +L G QKP K+I F F+S+ L+ SQK A+ L++ ++ +L GPPGTGKT
Sbjct: 623 FIDLLLG-QKPI---KEIYFDNRLKFSSDKLNRSQKTAVEHVLNN-SITILQGPPGTGKT 677
Query: 227 TTVVEIILQEVKR--GSKILACAASNIAVDNIVERLVPHRVRLVRLGHPARLLPQVLESA 284
+T+ EII+Q ++R IL AASNIA+DNI E+++ +R ++ L R+L + E
Sbjct: 678 STIEEIIIQVIERFHAFPILCVAASNIAIDNIAEKIMENRPQIKIL----RILSKKKEQQ 733
Query: 285 LDAQVLRGD---NSSLASDIRKEMKALNGKLLKTKDKNTRRE--IQKELRTLSKEERKRQ 339
G+ ++ + ++ +M+ + K TRR I K T +E+ R
Sbjct: 734 YSDDHPLGEICLHNIVYKNLSPDMQVVANK--------TRRGEMISKSEDTKFYKEKNR- 784
Query: 340 QLAVTDVIKNADVVLTTLTGAVSRKLDN-TSFDLVIIDEAAQALEIACWIAL-LKGSR-C 396
V+ + ++ TT A R+L +VI+DEA Q+ E + + L L G R
Sbjct: 785 --VTNKVVSQSQIIFTTNIAAGGRELKVIKECPVVIMDEATQSSEASTLVPLSLPGIRNF 842
Query: 397 ILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQ 456
+ GD QL S + L +LFER+ + ML QYRMH I + K+
Sbjct: 843 VFVGDEKQL-----SSFSNIPQLETSLFERVLSNGTYKNPLMLDTQYRMHPKISEFPIKK 897
Query: 457 LYNSKI--------KAHPSVAAHMLF---DLEGVKRTSSTEPTLLLIDIAGCDMEEKKDE 505
+YN ++ KA P V + F DL R ST+ DI G E K +
Sbjct: 898 IYNGELKDGVTDEQKAWPGVQHPLFFYQCDLGPESRVRSTQR-----DIVGFTYENKHE- 951
Query: 506 EDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSKD---------- 555
E+ ++ V +IG+ITPY+AQ LL + +K+
Sbjct: 952 --------CVEIVKIIQILMLDKKVPLEEIGVITPYSAQRDLLSDILTKNVVINPKQISM 1003
Query: 556 ---------------------------DKLKNMEVSTVDGFQGREKEAIIISMVRSNSKK 588
+ + + V+TVD FQG EK II S VR+N++
Sbjct: 1004 QQEYDEIELFNAAGSQGTAGSLQNNVINIINGLHVATVDSFQGHEKSFIIFSCVRNNTEN 1063
Query: 589 EVGFLSDRRRMNVAVTRARRQCCLVCDTETV-SSDGFLKRLIEYFEEH 635
++GFL D+RR+NVA+TRA+ +V + + D K I Y EE
Sbjct: 1064 KIGFLRDKRRLNVALTRAKHGLIVVGNKNVLRKGDPLWKDYITYLEEQ 1111
>sp|Q86AS0|Y4399_DICDI Probable helicase DDB_G0274399 OS=Dictyostelium discoideum
GN=DDB_G0274399 PE=3 SV=1
Length = 967
Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 134/428 (31%), Positives = 205/428 (47%), Gaps = 60/428 (14%)
Query: 237 VKRGS---KILACAASNIAVDNIVERLV----------PHRVRLVRLGHPARLLPQVLES 283
VK GS +IL CA SN AVD IV RL+ + LVR+G P S
Sbjct: 455 VKGGSTKRRILLCAPSNGAVDEIVSRLIRDGLLNADGRKYNPNLVRVG-PG--------S 505
Query: 284 ALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAV 343
D + + SL +R + +N + +++ + L
Sbjct: 506 HSDVESV-----SLDYMVRCRQQLMNSNSAIPSSSASTAAATSGSSRSTQDTSSIRTL-- 558
Query: 344 TDVIKNADVVLTTLTGAVSRKLDNTS--FDLVIIDEAAQALEIACWIALLKGSR-CILAG 400
V+ AD+V TTL+ + + L + FD+VIIDEAAQA+E + I + G + +L G
Sbjct: 559 --VLDEADIVATTLSFSGASLLTKMAGGFDIVIIDEAAQAVETSTLIPIQHGCKKVVLVG 616
Query: 401 DHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNS 460
D QLP T+ S A K ++LF+RL + MLT QYRMH I + S+ Y
Sbjct: 617 DPKQLPATIISPLAIKYKYDQSLFQRLQE---KNSPHMLTTQYRMHSLIRAFPSRHFYQD 673
Query: 461 KIKAHPSV---AAHMLFDLEGVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEV 517
+ P++ A H ++ L+ D++ E K S NE E ++
Sbjct: 674 LLLDGPNIPSRATHY--------HSNPFFGPLVFYDLSWS--TETKPGGGSVFNEHECKM 723
Query: 518 AMAHAK---RLIQSGVHASDIGIITPYAAQVVLLK-ILRSKDDKLKNMEVSTVDGFQGRE 573
AM + ++ AS IGII+PY QV+ L+ I ++ + + TVDGFQGRE
Sbjct: 724 AMYLFQLFTKVYPDEDFASRIGIISPYRQQVLALREIFKN----YPGISIDTVDGFQGRE 779
Query: 574 KEAIIISMVRSNSKKE--VGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEY 631
+E II S VR+ ++ +GFLSD RRMNVA+TR R ++ +T+ +S + LI++
Sbjct: 780 REIIIFSCVRAPVEEGAGIGFLSDVRRMNVALTRPRSSLLILGNTKALSINKDWNELIQH 839
Query: 632 FEEHAEYL 639
+ + + +
Sbjct: 840 TQNNQQLI 847
Score = 39.3 bits (90), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 193 FNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEII 233
F+S + SQ +A++ AL + ++ GPPGTGKT ++ +I
Sbjct: 331 FSSTYNDSQLNALTSALEGNAITLIQGPPGTGKTHVILGLI 371
>sp|Q5ZKD7|MOV10_CHICK Putative helicase MOV-10 OS=Gallus gallus GN=MOV10 PE=2 SV=1
Length = 967
Score = 144 bits (362), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 174/704 (24%), Positives = 297/704 (42%), Gaps = 134/704 (19%)
Query: 1 MEGRKTKEKQSAVSLQEFV-SVMAP---------LIDLEKEAEISASITSGASRNLDTAQ 50
M G KT S + +Q + + + P L+ LE E ++ I + + Q
Sbjct: 306 MLGPKTSPDSSWMKMQSLLEAPLQPENYKQKFELLLHLE-EIQLEVDIRRYDLQEVPMVQ 364
Query: 51 KKGSTILNLKCV--DAQTGLMGKTLLEFQSTKGDVLPA--HKFGTHDVVVLKPNKADLG- 105
+ +LN+ V + + L G L S++ D P +K H V + + LG
Sbjct: 365 NRALLLLNVPGVAENRPSVLRGDHLFASLSSERDSSPRVLYKGYVHGVEL---ERVQLGF 421
Query: 106 SPALGQGVVYRLKDSSITVAFDDIPEEGLNSPLRLEKLANEVTYRRMKDALIQLSKGVQN 165
SP L + V LK +T F+ +P L+++ A + ++ D+++ S Q
Sbjct: 422 SPKLMKKFVNDLK-FDVTFTFNRLP-------LQVQHRAAAMAMQKGLDSVLFPSASCQR 473
Query: 166 GPAAGLIPVLFGEQKPTVLKKDIAFKPFNSNLDHSQK-DAISKALSSKNVFMLHGPPGTG 224
G+ +P + + +N + Q I +S +++ GPPGTG
Sbjct: 474 SLFTGIF-------QPRWFDRKV-----EANEEQCQAVKHIVTGMSRPAPYLIFGPPGTG 521
Query: 225 KTTTVVEIILQ--EVKRGSKILACAASNIAVDNIVERLVPHRVRLVRLGHPARLLPQVLE 282
KT T+VE I Q + ++ILACA SN A D + +RL L + R + +++
Sbjct: 522 KTVTLVEAIKQVWSCFKDARILACAPSNSAADLLCQRL------LTNIA--PRYIYRIMA 573
Query: 283 SALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLA 342
S+ + + +D+R + K
Sbjct: 574 SS-------ANYKDVPADVRPCCNW-------------------------DDSEKCYVYP 601
Query: 343 VTDVIKNADVVLTTLTGA---VSRKLDNTSFDLVIIDEAAQALEIACWIALL-------- 391
++K +++TTL A VS F V IDE A+E +A+
Sbjct: 602 SKKLLKPYRILITTLVTAGRLVSANFPPGYFSHVFIDECGHAVEPESVVAIAGLLTTMDP 661
Query: 392 ----KGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLA----------DLYGDEVTS 437
G + +LAGD QL P +S A + GLG +L ERL + Y + +
Sbjct: 662 DTNPNGGQLVLAGDPQQLGPVPRSPLAAQHGLGTSLLERLMLHNALYAKSDEGYNPQFVT 721
Query: 438 MLTVQYRMHEHIMNWSSKQLYNSKIKAHPSVAAHMLFDLEGVKRTSSTEPT--LLLIDIA 495
L YR H+ I+ ++ Y+S++KA+ D+ T P + +I
Sbjct: 722 KLLWNYRSHKAILKVPNELFYDSELKAYEGSEP----DVRNFYCTWEELPNRGVPIIFHG 777
Query: 496 GCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQS-------GVHASDIGIITPYAAQVVLL 548
C +E++ + S N E EV + + ++L+QS + +IGII+PY QV +
Sbjct: 778 VCGEDEREAKSPSFFNTAEIEVVVQYLQKLLQSQGRRGCPTISPKEIGIISPYRKQVEKI 837
Query: 549 KI-LRSKDDKLK------NMEVSTVDGFQGREKEAIIISMVRSNSKK-------EVGFLS 594
++ + SKD L+ ++V +V+ FQG+E+ I+IS VRS S+ +GFL
Sbjct: 838 RLAITSKDPVLRALPDIGQLKVGSVEEFQGQERRVILISTVRSCSEYLQLDQTFRLGFLK 897
Query: 595 DRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEY 638
+ +R+NVA+TRA+ +V + +S D R + Y + Y
Sbjct: 898 NPKRLNVALTRAKALLIVVGNAAVLSKDPHWHRFLRYCRDEGAY 941
>sp|Q6ZU11|YD002_HUMAN Uncharacterized protein FLJ44066 OS=Homo sapiens PE=2 SV=1
Length = 926
Score = 143 bits (361), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 134/446 (30%), Positives = 215/446 (48%), Gaps = 67/446 (15%)
Query: 216 MLHGPPGTGKTTTVVEIILQEVK-------------RGSKILACAASNIAVDNIVERLVP 262
++HG G GK+ + +IL V+ R K+L +++N+AVD ++ L+
Sbjct: 473 IIHGVFGAGKSYLLAVVILFFVQLFEKSEAPTIGNARPWKLLISSSTNVAVDRVLLGLLS 532
Query: 263 HRV-RLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGK-LLKTKDKNT 320
+R+G ++ +L +L A S S+ KE+ AL + L T+
Sbjct: 533 LGFENFIRVGSVRKIAKPILPYSLHA------GSENESEQLKELHALMKEDLTPTERVYV 586
Query: 321 RREIQKEL----RTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVSRKLDNTSFDLVIID 376
R+ I++ RTL K+ R VV T +++ F +V++D
Sbjct: 587 RKSIEQHKLGTNRTLLKQVR---------------VVGVTCAACPFPCMNDLKFPVVVLD 631
Query: 377 EAAQALEIACW--IALLKGSRCILAGDHLQLPPTVQ-SVEAEKKGLGRTLFERLADLYGD 433
E +Q E A IA + + IL GD QLPPT+Q S A + GL +TLF+RL L G
Sbjct: 632 ECSQITEPASLLPIARFECEKLILVGDPKQLPPTIQGSDAAHENGLEQTLFDRLC-LMGH 690
Query: 434 EVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSVAAHMLFDLEGVKRTSSTE--PTLLL 491
+ +L QYR H I ++ Y ++ + ++R+ E PTL
Sbjct: 691 KPI-LLRTQYRCHPAISAIANDLFYKGA----------LMNGVTEIERSPLLEWLPTLCF 739
Query: 492 IDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKIL 551
++ G + E+ ++S N EA + + LI SG+ S IG+IT Y +Q+ L L
Sbjct: 740 YNVKGLEQIER---DNSFHNVAEATFTLKLIQSLIASGIAGSMIGVITLYKSQMYKLCHL 796
Query: 552 RSKDD----KLKNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRAR 607
S D +K ++VSTVD FQG EKE II+S VR+ ++VGF+ +RMNVA+TR +
Sbjct: 797 LSAVDFHHPDIKTVQVSTVDAFQGAEKEIIILSCVRT---RQVGFIDSEKRMNVALTRGK 853
Query: 608 RQCCLVCDTETVSSDGFLKRLIEYFE 633
R +V + + + R+I++ E
Sbjct: 854 RHLLIVGNLACLRKNQLWGRVIQHCE 879
>sp|P23249|MOV10_MOUSE Putative helicase MOV-10 OS=Mus musculus GN=Mov10 PE=1 SV=2
Length = 1004
Score = 142 bits (359), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 146/560 (26%), Positives = 245/560 (43%), Gaps = 126/560 (22%)
Query: 137 PLRLEKLANEVTYRRMKDALIQLSKGVQNGPAAGLIPVLF--GEQKPTVLKKDIAFKPFN 194
PLR++ A E+T R + L P+LF + ++L D+ FK ++
Sbjct: 454 PLRVQHRALELTGRWV------------------LWPMLFPVASRGVSLLPSDVKFKLYD 495
Query: 195 SNLDHSQKD-----AISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSK--ILACA 247
+L+ + + I + + +++ GPPGTGKT T+VE I Q VK K ILACA
Sbjct: 496 RSLESNPEQLQAMKHIVRGTTRPAPYIIFGPPGTGKTVTLVEAIKQVVKHLPKAHILACA 555
Query: 248 ASNIAVDNIVERLVPH-RVRLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMK 306
SN D + +RL H + RL P+R DIR
Sbjct: 556 PSNSGADLLCQRLRVHLPSSIYRLLAPSR------------------------DIRM--- 588
Query: 307 ALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVT--DVIKNADVVLTTLTGA---V 361
+ ++++T + K+ + ++ V++TTL A V
Sbjct: 589 -----------------VPEDIKTCCNWDAKKGEYVYPAKKHLQQYRVLITTLITASRLV 631
Query: 362 SRKLDNTSFDLVIIDEAAQALEIACWIALL----------KGSRCILAGDHLQLPPTVQS 411
S + F + IDEA +E +A+ G + +LAGD QL P ++S
Sbjct: 632 SAQFPIDHFTHIFIDEAGHCMEPESLVAIAGLMDVKETGNPGGQLVLAGDPRQLGPVLRS 691
Query: 412 VEAEKKGLGRTLFERL----------ADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSK 461
A K GLG +L ERL + Y + + L YR H I++ ++ Y+ +
Sbjct: 692 PLALKHGLGYSLLERLLAYNSLYKKGPNGYDPQFITKLLRNYRSHPTILDIPNQLYYDGE 751
Query: 462 IKAHPSVAAHMLF-DLEGVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMA 520
++A V F EG+ + ++ + G D E++ S N EA +
Sbjct: 752 LQACADVVDRERFCRWEGLPQQGF---PIIFHGVMGKD--EREGNSPSFFNPEEAATVTS 806
Query: 521 HAKRLI-------QSGVHASDIGIITPYAAQVVLLKI--------LRSKDDKLKNMEVST 565
+ K+L+ ++ + ++G+I+PY QV ++ LR DD +K+++V +
Sbjct: 807 YLKQLLAPSSKKGKARLSPRNVGVISPYRKQVEKIRYCITKLDRELRGLDD-IKDLKVGS 865
Query: 566 VDGFQGREKEAIIISMVRSNSK-------KEVGFLSDRRRMNVAVTRARRQCCLVCDTET 618
V+ FQG+E+ I+IS VRS+ +GFL + +R NVAVTRA+ +V +
Sbjct: 866 VEEFQGQERSVILISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNPLL 925
Query: 619 VSSDGFLKRLIEYFEEHAEY 638
+ D K +E+ +E+ Y
Sbjct: 926 LGHDPDWKTFLEFCKENGGY 945
>sp|Q9URU2|DNA2_SCHPO DNA replication ATP-dependent helicase/nuclease dna2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=dna2 PE=1 SV=2
Length = 1397
Score = 142 bits (359), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 139/477 (29%), Positives = 220/477 (46%), Gaps = 94/477 (19%)
Query: 197 LDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNI 256
L+ Q A+ K ++++ ++ G PGTGKTTT+ +I + + KIL + +++AVDNI
Sbjct: 932 LNEDQITALKKCHAAEHYSLILGMPGTGKTTTISSLIRSLLAKKKKILLTSFTHLAVDNI 991
Query: 257 VERLVPHRVRLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTK 316
+ +L +VRLG P ++ P V E L D +SL
Sbjct: 992 LIKLKGCDSTIVRLGSPHKIHPLVKEFCLTEGTTFDDLASLKH----------------- 1034
Query: 317 DKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVSRKLDNTSFDLVIID 376
++ +V + G + FD IID
Sbjct: 1035 -----------------------------FYEDPQIVACSSLGVYHSIFNKRKFDYCIID 1065
Query: 377 EAAQALEIACWIALLKGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVT 436
EA+Q C L + +L GDH QLPP V++ K GL +LF+ L++ + + VT
Sbjct: 1066 EASQIPLPICLGPLQLAEKFVLVGDHYQLPPLVKNSRTSKDGLSLSLFKLLSEKHPEAVT 1125
Query: 437 SMLTVQYRMHEHIMNWSSKQLYNSKI---------------KAHPSVAAHMLFDLEGVKR 481
+ L +QYRM+E I + SS+ +Y + KAH S +G+
Sbjct: 1126 T-LRLQYRMNEDINSLSSELIYGGNLVCGSKTISQKKLILPKAHLS---------DGLPD 1175
Query: 482 TSST--------EPTLLLI-----DIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQS 528
+SS+ P+ +I DI G + + E+ T EA + ++
Sbjct: 1176 SSSSLHWVNKLINPSHSVIFFNTDDILGVESKTNNILENHT----EAFLIEQAVSSFLER 1231
Query: 529 GVHASDIGIITPYAAQVVLL-KILRSKDDKLKNMEVSTVDGFQGREKEAIIISMVRSNSK 587
GV S IGII+ Y +QV LL K L+S +E++TVD +QGR+K+ I+IS VRSNSK
Sbjct: 1232 GVKQSSIGIISIYKSQVELLSKNLKS----FTEIEINTVDRYQGRDKDIILISFVRSNSK 1287
Query: 588 KEVG-FLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEYLSGSE 643
VG L D R+NVA++RA+ +C + T+SS + L++ E++ + +E
Sbjct: 1288 NLVGELLRDWHRLNVALSRAKVKCIMFGSLSTLSSSNIVSHLLKLLEKNKWIFTLNE 1344
>sp|Q0V8H6|MOV10_BOVIN Putative helicase MOV-10 OS=Bos taurus GN=MOV10 PE=2 SV=1
Length = 1003
Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 139/526 (26%), Positives = 231/526 (43%), Gaps = 108/526 (20%)
Query: 171 LIPVLF--GEQKPTVLKKDIAFKPFNSNLDHSQKD-----AISKALSSKNVFMLHGPPGT 223
L P+LF + +L D+ K ++ +L+ + + I + +++ GPPGT
Sbjct: 469 LEPMLFPVASRGVPLLPSDVKLKLYDRSLESNPEQLQAMKHIVMGTTRPAPYIIFGPPGT 528
Query: 224 GKTTTVVEIILQEVKRGSK--ILACAASNIAVDNIVERLVPH-RVRLVRLGHPAR---LL 277
GKT T+VE I Q VK K ILACA SN D + +RL H + RL P+R L+
Sbjct: 529 GKTVTLVEAIKQVVKHLPKAHILACAPSNSGADLLCQRLRVHLPSSIYRLLAPSRDIHLV 588
Query: 278 PQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERK 337
P+ ++ + +GD + +K K
Sbjct: 589 PEDIKPCCNWDAKKGDF-----------------VFPSKKK------------------- 612
Query: 338 RQQLAVTDVIKNADVVLTTLTGA---VSRKLDNTSFDLVIIDEAAQALEIACWIALL--- 391
++ V++TTL A VS + F + IDEA A+E +A+
Sbjct: 613 ---------LQEYRVLITTLITASRLVSAQFPIDHFTHIFIDEAGHAMEPESLVAIAGLM 663
Query: 392 -------KGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERL----------ADLYGDE 434
G + +LAGD QL P ++ +K GLG +L ERL D Y +
Sbjct: 664 EVKEADNPGGQLVLAGDPRQLGPVLRCPLTQKHGLGYSLLERLLTFNALYKKGPDGYNPQ 723
Query: 435 VTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSVAAHMLF-DLEGVKRTSSTEPTLLLID 493
+ L YR H I++ ++ Y+ +++A V F EG+ R ++
Sbjct: 724 FITKLLRNYRSHPTILDVPNRLYYDGELQACADVVDRERFCRWEGLPRQDFP---IIFHG 780
Query: 494 IAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLI-------QSGVHASDIGIITPYAAQVV 546
+ G D E++ S N EA ++ K+L+ ++ + +G+I+PY QV
Sbjct: 781 VMGKD--EREGNSPSFFNPEEAATVTSYLKQLLAPSSKKGKARLSPRSVGVISPYRKQVE 838
Query: 547 LLKILRSKDDK-------LKNMEVSTVDGFQGREKEAIIISMVRSNSK-------KEVGF 592
++ +K DK +K+++V +V+ FQG+E+ I+IS VRS+ +GF
Sbjct: 839 KIRYCITKLDKQLRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQLDLDFNLGF 898
Query: 593 LSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEY 638
L + +R NVAVTRA+ +V + + D K +E+ +E+ Y
Sbjct: 899 LKNPKRFNVAVTRAKALLIVVGNPLLLGHDPDWKVFLEFCKENGGY 944
>sp|Q9HCE1|MOV10_HUMAN Putative helicase MOV-10 OS=Homo sapiens GN=MOV10 PE=1 SV=2
Length = 1003
Score = 136 bits (342), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 143/561 (25%), Positives = 235/561 (41%), Gaps = 128/561 (22%)
Query: 137 PLRLEKLANEVTYRRMKDALIQLSKGVQNGPAAGLIPVLF--GEQKPTVLKKDIAFKPFN 194
PLR++ A E+T R + L P+LF + +L D+ K ++
Sbjct: 453 PLRVQHRALELTGRWL------------------LWPMLFPVAPRDVPLLPSDVKLKLYD 494
Query: 195 SNLDHSQKD-----AISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSK--ILACA 247
+L+ + + I + +++ GPPGTGKT T+VE I Q VK K ILACA
Sbjct: 495 RSLESNPEQLQAMRHIVTGTTRPAPYIIFGPPGTGKTVTLVEAIKQVVKHLPKAHILACA 554
Query: 248 ASNIAVDNIVERLVPHR----VRLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRK 303
SN D + +RL H RL+ R++P+ ++ + +G+ A +
Sbjct: 555 PSNSGADLLCQRLRVHLPSSIYRLLAPSRDIRMVPEDIKPCCNWDAKKGEYVFPAKKKLQ 614
Query: 304 EMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGA--- 360
E + V++TTL A
Sbjct: 615 EYR---------------------------------------------VLITTLITAGRL 629
Query: 361 VSRKLDNTSFDLVIIDEAAQALEIACWIALL----------KGSRCILAGDHLQLPPTVQ 410
VS + F + IDEA +E +A+ G + +LAGD QL P ++
Sbjct: 630 VSAQFPIDHFTHIFIDEAGHCMEPESLVAIAGLMEVKETGDPGGQLVLAGDPRQLGPVLR 689
Query: 411 SVEAEKKGLGRTLFERL----------ADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNS 460
S +K GLG +L ERL D Y + + L YR H I++ ++ Y
Sbjct: 690 SPLTQKHGLGYSLLERLLTYNSLYKKGPDGYDPQFITKLLRNYRSHPTILDIPNQLYYEG 749
Query: 461 KIKAHPSVAAHMLF-DLEGVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAM 519
+++A V F G+ R ++ + G D E++ S N EA
Sbjct: 750 ELQACADVVDRERFCRWAGLPRQGF---PIIFHGVMGKD--EREGNSPSFFNPEEAATVT 804
Query: 520 AHAKRLI-------QSGVHASDIGIITPYAAQVVLLKI--------LRSKDDKLKNMEVS 564
++ K L+ ++ + +G+I+PY QV ++ LR DD +K+++V
Sbjct: 805 SYLKLLLAPSSKKGKARLSPRSVGVISPYRKQVEKIRYCITKLDRELRGLDD-IKDLKVG 863
Query: 565 TVDGFQGREKEAIIISMVRSNSK-------KEVGFLSDRRRMNVAVTRARRQCCLVCDTE 617
+V+ FQG+E+ I+IS VRS+ +GFL + +R NVAVTRA+ +V +
Sbjct: 864 SVEEFQGQERSVILISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIIVGNPL 923
Query: 618 TVSSDGFLKRLIEYFEEHAEY 638
+ D K +E+ +E+ Y
Sbjct: 924 LLGHDPDWKVFLEFCKENGGY 944
>sp|Q1LXK4|M10B1_DANRE Putative helicase mov-10-B.1 OS=Danio rerio GN=mov10b.1 PE=2 SV=2
Length = 1013
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 136/490 (27%), Positives = 218/490 (44%), Gaps = 93/490 (18%)
Query: 189 AFKPFNSNLDHS--QKDAISKAL---SSKNVFMLHGPPGTGKTTTVVEIILQEVKR--GS 241
A + F+ L+ + QK A+ + S +++ GPPGTGKT T+VE I Q K G+
Sbjct: 515 ALRLFDQKLEKNPEQKTAVCNIVAGTSKPAPYLVFGPPGTGKTVTIVEAIKQVEKNTGGA 574
Query: 242 KILACAASNIAVDNIVERLVPHRVRLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDI 301
+ILACA SN A D + E+L+
Sbjct: 575 RILACAPSNSAADQLGEKLI---------------------------------------T 595
Query: 302 RKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGA- 360
+ + A N + +N + EI K L S E + + + +V+ TL A
Sbjct: 596 SQHVDARNIYRIYASSRNPK-EIPKVLENNSNVEGENIIFPCKEDLMPYKIVVCTLVTAG 654
Query: 361 --VSRKLDNTSFDLVIIDEAAQALEIACWIALL-----KGSRCILAGDHLQLPPTVQSVE 413
VS F + +DEA A+E I++ + + +LAGD QL P ++S
Sbjct: 655 RLVSGGFPVGHFSHIFVDEAGHAVEPEIVISVAGLLNAETGQLVLAGDPKQLGPILRSPF 714
Query: 414 AEKKGLGRTLFERLA---DLY--GDE------VTSMLTVQYRMHEHIMNWSSKQLYNSKI 462
A K GLG +L ERL +LY GD VT +L YR H I+ ++ Y++++
Sbjct: 715 AIKYGLGLSLLERLMTQNELYQKGDTGFDNRYVTKLLQ-NYRSHPSILKVPNELFYDNEL 773
Query: 463 KA-HPSVAAHMLFDLEGVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAH 521
KA +++ E + + ++ + G D E++ S N E + M +
Sbjct: 774 KACADEISSRQYCTWEHLPKRGFP---VIFHGVVGKD--ERESTSPSFFNTSEIDKIMDY 828
Query: 522 AKRLIQS-------GVHASDIGIITPYAAQV----VLLKILRSKDD--KLKNMEVSTVDG 568
K+L+ + + DIGII PY QV +KI R ++ ++V +V+
Sbjct: 829 LKKLLLTQAKKGIAKISPKDIGIIAPYRKQVEKIRQAIKIHRELKSLSGIEELKVGSVEE 888
Query: 569 FQGREKEAIIISMVRS-------NSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSS 621
FQG+E++ II+S VRS + K +GFL + +R NVAVTRA+ +V + + +
Sbjct: 889 FQGQERKVIIVSTVRSSKEHIILDDKFNIGFLKNEKRFNVAVTRAKALLIMVGNPIILRT 948
Query: 622 DGFLKRLIEY 631
D R + Y
Sbjct: 949 DEIWGRFMNY 958
>sp|Q1LXK5|M10B2_DANRE Putative helicase mov-10-B.2 OS=Danio rerio GN=mov10b.2 PE=3 SV=1
Length = 1015
Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 133/470 (28%), Positives = 213/470 (45%), Gaps = 96/470 (20%)
Query: 215 FMLHGPPGTGKTTTVVEIILQEVKR--GSKILACAASNIAVDNIVERLV------PHRV- 265
+++ GPPGTGKT T+VE I Q K + ILACA SN A D + E+L+ H++
Sbjct: 551 YLVFGPPGTGKTVTIVEAIKQVEKNIPDAYILACAPSNSAADQLCEKLITSEHVDAHKIY 610
Query: 266 RLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQ 325
RL + +P++L+ DN ++ +EM
Sbjct: 611 RLYASSRNQKDIPKILK----------DNC----NVDEEM-------------------- 636
Query: 326 KELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIA 385
+ KE+ ++ + ++ +V TG S +F +DEA A+E
Sbjct: 637 --IDFPCKEDLMSYKILICTLVTAGRLV----TGGFSEDHFTHNF----VDEAGHAVESE 686
Query: 386 CWIA---LLKGSR--CILAGDHLQLPPTVQSVEAEKKGLGRTLFERLA---DLY--GD-- 433
I+ LL + +LAGD QL P ++S A GL +L ERL DLY GD
Sbjct: 687 TIISVAGLLNAEKGQLVLAGDPKQLGPILRSPLAINHGLDVSLLERLMTQNDLYKRGDVE 746
Query: 434 ---EVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSVAAHMLFDLEGVKRTSSTEPTLL 490
S L + YR H +I+ ++ Y+ ++KA + + + + S ++
Sbjct: 747 FDNRYVSKLIMNYRSHPYILEVPNRLFYDGELKACADEISSNQYCM--WEHLPSKGFPVI 804
Query: 491 LIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQ-------SGVHASDIGIITPYAA 543
+ G D E++ S N E + + + K+L+ S + DIGII PY
Sbjct: 805 FHGVPGKD--ERESNSPSFFNIYEINILVDYLKKLLLTQPKKGISRIFPKDIGIIAPYRK 862
Query: 544 QVVLLKILRSKD-DK-------LKNMEVSTVDGFQGREKEAIIISMVRSNSKK------- 588
QV KI R+ D DK + N++V +V+ FQG+E++ I++S VRS+ K
Sbjct: 863 QVE--KIKRAIDADKDFQDYMGIDNLKVGSVEEFQGQERKVIMVSTVRSSVKYISLDETF 920
Query: 589 EVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEY 638
+GFL + +R NVAVTRA+ +V + + +D R I++ E Y
Sbjct: 921 NIGFLKNEKRFNVAVTRAKSLLIMVGNPMILRTDESWGRFIDFCLERGGY 970
>sp|Q9BYK8|HELZ2_HUMAN Helicase with zinc finger domain 2 OS=Homo sapiens GN=HELZ2 PE=1 SV=6
Length = 2649
Score = 118 bits (296), Expect = 1e-25, Method: Composition-based stats.
Identities = 150/589 (25%), Positives = 245/589 (41%), Gaps = 112/589 (19%)
Query: 124 VAFDDIPEEGLNS---------PLRLEKLANEVTYRRMKDAL-----IQLSKGVQNGPAA 169
+ + +PEE L P +L L E R +++A I L + V P
Sbjct: 2073 MGMEKVPEEVLRPGTLFTVELLPKQLPDLRKEEAVRGLEEASPLVTSIALGRPVPQ-PLC 2131
Query: 170 GLIPVLFGEQKPTVLKKDIAFKPFNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTV 229
+IP F E++ + L+ SQ A+ +AL K ++ GPPGTGKT
Sbjct: 2132 RVIPSRFLERQTYNIPGG------RHKLNPSQNVAVREALE-KPFTVIQGPPGTGKTIVG 2184
Query: 230 VEIIL-------QEVK-----RGSK------ILACAASNIAVDNIVERLVPHRVRLVRLG 271
+ I+ ++V+ RG K IL C SN +VD ++ L+ R+ L
Sbjct: 2185 LHIVFWFHKSNQEQVQPGGPPRGEKRLGGPCILYCGPSNKSVD-VLAGLLLRRMEL---- 2239
Query: 272 HPARLLPQVLESALDAQVLRGDNSSLASDIR--KEMKALNGKLLKTKDKNTRREIQKELR 329
P R+ + E++ G L R + ++L L + + E++
Sbjct: 2240 KPLRVYSEQAEASEFPVPRVGSRKLLRKSPREGRPNQSLRSITLHHRIRQAPNPYSSEIK 2299
Query: 330 TLSKEERKRQQLAVTDVI--------------KNADVVLTTLTGAVSRKLDNTSFDLVII 375
++ + + D++ +V+L T + A S L +++
Sbjct: 2300 AFDTRLQRGELFSREDLVWYKKVLWEARKFELDRHEVILCTCSCAASASLKILDVRQILV 2359
Query: 376 DEAAQALEIACWIALLK---GSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYG 432
DEA A E I L++ + +L GDH QL P V++ + GL R+LFER
Sbjct: 2360 DEAGMATEPETLIPLVQFPQAEKVVLLGDHKQLRPVVKNERLQNLGLDRSLFERY----- 2414
Query: 433 DEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKA------HPSVAAH--------MLFDLEG 478
E ML QYRMHE I + S Y SK+K PSV H + ++G
Sbjct: 2415 HEDAHMLDTQYRMHEGICAFPSVAFYKSKLKTWQGLRRPPSVLGHAGKESCPVIFGHVQG 2474
Query: 479 VKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGII 538
+R+ LL+ ++ +E E AEV + + V DI ++
Sbjct: 2475 HERS-------LLVST------DEGNENSKANLEEVAEVVRITKQLTLGRTVEPQDIAVL 2521
Query: 539 TPYAAQVV-LLKILRSKDDKLKNMEVSTVDGFQGREKEAIIISMVRSNS----------- 586
TPY AQ + K LR + + + VS++ QG E +++S VR+ +
Sbjct: 2522 TPYNAQASEISKALRR--EGIAGVAVSSITKSQGSEWRYVLVSTVRTCAKSDLDQRPTKS 2579
Query: 587 --KKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFE 633
KK +GF+ D ++NVAVTRA+ CL+ D + + L+++ E
Sbjct: 2580 WLKKFLGFVVDPNQVNVAVTRAQEGLCLIGDHLLLRCCPLWRSLLDFCE 2628
Score = 74.3 bits (181), Expect = 3e-12, Method: Composition-based stats.
Identities = 117/447 (26%), Positives = 181/447 (40%), Gaps = 84/447 (18%)
Query: 215 FMLHGPPGTGKTTTVVEIILQEVKR-GSKILACAASNIAVD-NIVERLVPHRVRLVRLGH 272
+++GP GTGKT T+ L+ ++R +K+L C +N A D I E H V GH
Sbjct: 540 LLIYGPFGTGKTYTLAMASLEVIRRPETKVLICTHTNSAADIYIREYFHSH----VSGGH 595
Query: 273 PARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLS 332
P +V+ + D + + D +L T D+ + R +
Sbjct: 596 PEATPLRVMYT--DRPLSQTDPVTLQY------------CCLTDDR-------QAFRPPT 634
Query: 333 KEERKRQQLAVTDVIKNADVVLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIACWIALL- 391
+ E R + VV+TT + A ++ F ++IDEAAQ LE L
Sbjct: 635 RAELARHR-----------VVVTTTSQARELRVPVGFFSHILIDEAAQMLECEALTPLAY 683
Query: 392 --KGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTS-------MLTVQ 442
G+R +LAGDH+Q+ P + SV A + TL RL Y E +
Sbjct: 684 ASHGTRLVLAGDHMQVTPRLFSV-ARARAAEHTLLHRLFLCYQQETHEVARQSRLVFHEN 742
Query: 443 YRMHEHIMNWSSKQLY---------NSKIKAHPSVAAHMLFDLEGV-KRTSSTEPTLLLI 492
YR + I+++ S+ Y K+ HP M + G R S L L
Sbjct: 743 YRCTDAIVSFISRHFYVAKGNPIHARGKVPPHPRHYPLMFCHVAGSPDRDMSMASWLNLA 802
Query: 493 DIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKI-L 551
+IA + EK E +T +R I + + AQV L+ L
Sbjct: 803 EIA--QVVEKVQEAYNTW----PSCWGGREQRCI----------CVVSHGAQVSALRQEL 846
Query: 552 RSKDDKLKNMEVSTVDGFQGREKEAIIISMVRS-NSKKEVG-----FLSDRRRMNVAVTR 605
R +D L + V + + GR+ +++S V + S G F +D R +N +TR
Sbjct: 847 RRRD--LGQVSVGSFEILPGRQFRVVVLSTVHTCQSLLSPGALAPEFFTDARVLNTVLTR 904
Query: 606 ARRQCCLVCDTETVSSDGFLKRLIEYF 632
A+ Q +V D + S G +L E F
Sbjct: 905 AQSQLVVVGDAVALCSFGACGKLWESF 931
>sp|Q6DFV5|HELZ_MOUSE Probable helicase with zinc finger domain OS=Mus musculus GN=Helz
PE=1 SV=2
Length = 1964
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 127/451 (28%), Positives = 194/451 (43%), Gaps = 88/451 (19%)
Query: 219 GPPGTGKTTTVVEI---ILQEVKRGSKILACAASNIAVD-NIVERLVPHRVRLVRLGHPA 274
GP GTGKT T+ + ILQ+ + ++IL C SN A D I + L P+ V G+P
Sbjct: 668 GPYGTGKTFTLAQAAKHILQQ--QETRILICTHSNSAADLYIKDYLHPY----VEAGNP- 720
Query: 275 RLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKE 334
A+ LR + + T + + +S
Sbjct: 721 -----------QARPLR-------------------VYFRNRWVKTVHPVVHQYCLISST 750
Query: 335 ERKRQQLAVTDVIKNADVVLTTLTGAVSRKLD--NTSFDLVIIDEAAQALEIACWIAL-- 390
+ Q D++K+ VV+T T +LD F V++DEAAQA+E + L
Sbjct: 751 QSTFQMPQKEDILKHRVVVVTLSTSQYLCQLDLEPGFFTHVLLDEAAQAMECETIMPLAL 810
Query: 391 -LKGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTS--MLTVQYRMHE 447
K +R +LAGDH+QL P V S A ++ L +L +RL + Y E +L YR HE
Sbjct: 811 ATKNTRIVLAGDHMQLSPFVYSEFARERNLHVSLLDRLYEHYPAEFPCRILLCENYRSHE 870
Query: 448 HIMNWSSKQLYNSKIKAHPSVAAHMLFDLEGVKRTSSTEPTLLLIDIAGCDMEEKKDE-- 505
I+N++S+ Y K+ A AH F L G D++EK
Sbjct: 871 AIINYTSELFYEGKLMASGKQPAHKDFY------------PLTFFTARGEDVQEKNSTAF 918
Query: 506 -EDSTMNEGEAEVAMAHAKRLIQSG-VHASDIGIITPYAAQVVLLKI-LRSKDDKLKNME 562
++ + E V K + G + IG++TPYA QV ++ LR K +L ++
Sbjct: 919 YNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQVFRIRAELRKK--RLSDVN 976
Query: 563 VSTVDGFQGREKEAIIISMVRSNS----------KKE-----------VGFLSDRRRMNV 601
V V QG++ + +S VR+ KKE GFLS+ + +N
Sbjct: 977 VERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIKKKEQLLEDSTEDLDYGFLSNYKLLNT 1036
Query: 602 AVTRARRQCCLVCDTETVSSDGFLKRLIEYF 632
A+TRA+ +V D + S G ++ E F
Sbjct: 1037 AITRAQSLVAVVGDPVALCSIGRCRKFWERF 1067
>sp|Q6J5K9|ARMI_DROME Probable RNA helicase armi OS=Drosophila melanogaster GN=armi PE=2
SV=3
Length = 1274
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 131/491 (26%), Positives = 219/491 (44%), Gaps = 61/491 (12%)
Query: 187 DIAFKPFNSNLDHSQKDAISKAL--SSKNV-FMLHGPPGTGKTTTVVEIILQEVKR--GS 241
D + +N +L+ QK A+ L ++N+ ++L GPPG+GKT T++E +LQ V+ G+
Sbjct: 774 DSKLEWYNQSLNSIQKRAVFNILRGEAENIPYVLFGPPGSGKTMTLIETLLQLVRNLPGA 833
Query: 242 KILACAASNIAVDNIVERLVPHRVRLVRLGHPARLLP--QVLESALDAQVLRGDNSSLAS 299
+IL SN + D + +RL+ + L G RL+ QV + + +++ + S
Sbjct: 834 RILVGTPSNSSADLVTKRLIDSKALLQ--GDFIRLVSYNQVEKDLIPPEIM---SYCATS 888
Query: 300 DIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTG 359
D+ G + +DK E +LR +K T I + TTL
Sbjct: 889 DV--------GAVGSCEDKMMVTESGLKLRCQAK-------FIGTHRITIS--TCTTLGN 931
Query: 360 AVSRKLDNTSFDLVIIDEAAQALEIACWIALL----KGSRCILAGDHLQLPPTVQSVEAE 415
+ F V+ DEA Q E + ++ K S+ +L+GD QL V S A
Sbjct: 932 FLQLGFPAGHFTHVLFDEAGQCTEPETMVPIVMLTKKRSQVVLSGDPRQLQSIVTSRIAS 991
Query: 416 KKGLGRTLFERL-------ADL--------YGDEVTSMLTVQYRMHEHIMNWSSKQLYNS 460
K G + ERL DL Y V + L YR IM+ S+ Y+
Sbjct: 992 KMGFSISFLERLLERSPYRKDLQRFPESSGYNPLVLTKLLYNYRALPSIMSIYSRLFYDD 1051
Query: 461 KI----KAHPSVAAHMLFDLEGVKRTSSTEPTLLLIDIAGCDMEEKKDEED-STMNEGEA 515
++ S + +L L V + P G E +++ + S N E
Sbjct: 1052 ELIPVLSEKDSRESRLLSKLRCVFESEKDIPQAHGTFFYGIIGENRQNNDSPSWFNPQEV 1111
Query: 516 EVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSKDDKLKNMEVSTVDGFQGREKE 575
L ++ V A IGIITPY QV +L+ + D + ++ +V+ FQG+E++
Sbjct: 1112 REVFLMTIALYRANVTADQIGIITPYQKQVKMLRSMFIGTDVVMP-KIGSVEEFQGQERD 1170
Query: 576 AIIISMVRS-------NSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRL 628
I+IS VRS +++ +GF+ +R+NVAV+RAR + + ++ D ++L
Sbjct: 1171 IILISTVRSSEEILRMDARFSLGFVRCSKRLNVAVSRARAMMIIFGNPHLLAVDECWRQL 1230
Query: 629 IEYFEEHAEYL 639
I + ++ Y
Sbjct: 1231 ILFCVKNNAYF 1241
>sp|P42694|HELZ_HUMAN Probable helicase with zinc finger domain OS=Homo sapiens GN=HELZ
PE=1 SV=2
Length = 1942
Score = 112 bits (281), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 126/451 (27%), Positives = 194/451 (43%), Gaps = 88/451 (19%)
Query: 219 GPPGTGKTTTV---VEIILQEVKRGSKILACAASNIAVD-NIVERLVPHRVRLVRLGHPA 274
GP GTGKT T+ V+ ILQ+ + ++IL C SN A D I + L P+ V G+P
Sbjct: 668 GPYGTGKTFTLAQAVKHILQQ--QETRILICTHSNSAADLYIKDYLHPY----VEAGNP- 720
Query: 275 RLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKE 334
A+ LR + + T + + +S
Sbjct: 721 -----------QARPLR-------------------VYFRNRWVKTVHPVVHQYCLISSA 750
Query: 335 ERKRQQLAVTDVIKNADVVLTTLTGAVSRKLD--NTSFDLVIIDEAAQALEIACWIAL-- 390
Q D++K+ VV+T T +LD F +++DEAAQA+E + L
Sbjct: 751 HSTFQMPQKEDILKHRVVVVTLNTSQYLCQLDLEPGFFTHILLDEAAQAMECETIMPLAL 810
Query: 391 -LKGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTS--MLTVQYRMHE 447
+ +R +LAGDH+QL P V S A ++ L +L +RL + Y E +L YR HE
Sbjct: 811 ATQNTRIVLAGDHMQLSPFVYSEFARERNLHVSLLDRLYEHYPAEFPCRILLCENYRSHE 870
Query: 448 HIMNWSSKQLYNSKIKAHPSVAAHMLFDLEGVKRTSSTEPTLLLIDIAGCDMEEKKDE-- 505
I+N++S+ Y K+ A AH F L G D++EK
Sbjct: 871 AIINYTSELFYEGKLMASGKQPAHKDFY------------PLTFFTARGEDVQEKNSTAF 918
Query: 506 -EDSTMNEGEAEVAMAHAKRLIQSG-VHASDIGIITPYAAQVVLLKI-LRSKDDKLKNME 562
++ + E V K + G + IG++TPYA QV ++ LR K +L ++
Sbjct: 919 YNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQVFRIRAELRKK--RLSDVN 976
Query: 563 VSTVDGFQGREKEAIIISMVRSNS----------KKE-----------VGFLSDRRRMNV 601
V V QG++ + +S VR+ KKE GFLS+ + +N
Sbjct: 977 VERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIKKKEQLLEDSTEDLDYGFLSNYKLLNT 1036
Query: 602 AVTRARRQCCLVCDTETVSSDGFLKRLIEYF 632
A+TRA+ +V D + S G ++ E F
Sbjct: 1037 AITRAQSLVAVVGDPIALCSIGRCRKFWERF 1067
>sp|Q9BXT6|M10L1_HUMAN Putative helicase Mov10l1 OS=Homo sapiens GN=MOV10L1 PE=1 SV=1
Length = 1211
Score = 112 bits (280), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 143/301 (47%), Gaps = 39/301 (12%)
Query: 370 FDLVIIDEAAQALEIACWIAL-----LKGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLF 424
F V +DEA QA E C I L + G + +LAGD +QL P ++S A GL +
Sbjct: 880 FTHVFVDEAGQASEPECLIPLGLMSDISG-QIVLAGDPMQLGPVIKSRLAMAYGLNVSFL 938
Query: 425 ERL---------------ADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIK--AHPS 467
ERL + + + L YR HE ++ S+ Y+ +++ A P+
Sbjct: 939 ERLMSRPAYQRDENAFGACGAHNPLLVTKLVKNYRSHEALLMLPSRLFYHRELEVCADPT 998
Query: 468 VAAHMLFDLEGVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRL-- 525
V +L G ++ L+ + G + E K S N EA + + L
Sbjct: 999 VVTSLL----GWEKLPKKGFPLIFHGVRGSEAREGKSP--SWFNPAEAVQVLRYCCLLAH 1052
Query: 526 -IQSGVHASDIGIITPYAAQVVLLKILRSKDDKLKNMEVSTVDGFQGREKEAIIISMVRS 584
I S V ASDIG+ITPY QV ++IL D L +++V +V+ FQG+E IIIS VRS
Sbjct: 1053 SISSQVSASDIGVITPYRKQVEKIRILLRNVD-LMDIKVGSVEEFQGQEYLVIIISTVRS 1111
Query: 585 NSKK------EVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEY 638
N + +GFLS+ +R NVA+TR + ++ + + D L+EY + Y
Sbjct: 1112 NEDRFEDDRYFLGFLSNSKRFNVAITRPKALLIVLGNPHVLVRDPCFGALLEYSITNGVY 1171
Query: 639 L 639
+
Sbjct: 1172 M 1172
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Query: 193 FNSNLDHSQKDAISKALSSKN---VFMLHGPPGTGKTTTVVEIILQ--EVKRGSKILACA 247
FN L+ +QK A+ + LS ++L GPPGTGKT T++E +LQ S+IL CA
Sbjct: 741 FNPVLNENQKLAVKRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHFALPDSRILVCA 800
Query: 248 ASNIAVDNIVERL 260
SN A D + RL
Sbjct: 801 PSNSAADLVCLRL 813
>sp|Q6NYU2|HELZ_DANRE Probable helicase with zinc finger domain OS=Danio rerio GN=helz PE=2
SV=1
Length = 1860
Score = 111 bits (278), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 131/507 (25%), Positives = 210/507 (41%), Gaps = 109/507 (21%)
Query: 182 TVLKKDIAFKP-------------FNSNLDHSQKDAISKALSSKNV----FMLHGPPGTG 224
++L DI+ P + L+ QK+AI + ++ ++ GP GTG
Sbjct: 607 SILFPDISLTPTIPWSPNRQWDEQLDPRLNAKQKEAILAITTPLSINLPPVLIIGPYGTG 666
Query: 225 KTTTVVEIILQEVKRG-SKILACAASNIAVD-NIVERLVPHRVRLVRLGHPARLLPQVLE 282
KT T+ + + +K+ S++L C SN A D I + L P+ V G+P
Sbjct: 667 KTFTLAQAVKHILKQPESRVLICTHSNSAADLYIKDYLHPY----VEAGNP--------- 713
Query: 283 SALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLA 342
A+ LR + + T + ++ +S Q
Sbjct: 714 ---HARPLR-------------------VYFRNRWVKTVHPLVQQYCLISGAHFTFQMPT 751
Query: 343 VTDVIKNADVVLTTLTGAVSRKLDNTS--FDLVIIDEAAQALEIACWIAL---LKGSRCI 397
DV ++ VV+T T +LD F +++DEAAQA+E + L +K +R +
Sbjct: 752 RQDVERHRVVVVTLSTSQYLCQLDLEPGIFTHILLDEAAQAMECETIMPLALAVKSTRVV 811
Query: 398 LAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTS--MLTVQYRMHEHIMNWSSK 455
LAGDH+QL P V S A ++ L +L +RL + Y E +L YR HE I+N++S
Sbjct: 812 LAGDHMQLSPFVYSEFARERNLHVSLLDRLYEHYPSEYPCRILLCENYRSHEAIINYTSD 871
Query: 456 QLYNSKIKAHPSVAAHMLFDLEGVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEA 515
Y K+ A H F L G D++EK +ST A
Sbjct: 872 LFYEGKLMASGKQPPHKDFY------------PLTFFTARGEDVQEK----NSTAYYNNA 915
Query: 516 EV--------AMAHAKRLIQSGVHASDIGIITPYAAQVVLLKI-LRSKDDKLKNMEVSTV 566
EV M + + IG+++PYA QV ++ LR K ++ + V V
Sbjct: 916 EVFEIVERVEEMRKKWPVSWGKLEEGSIGVVSPYADQVFRIRAELRKK--RMSEVSVERV 973
Query: 567 DGFQGREKEAIIISMVRSNS----------KKE-----------VGFLSDRRRMNVAVTR 605
QG++ + +S VR+ +KE GFLS+ + +N A+TR
Sbjct: 974 LNVQGKQFRVLFLSTVRTRHTCKHKQTAIKRKEQLVEDSTEDLDYGFLSNYKLLNTAITR 1033
Query: 606 ARRQCCLVCDTETVSSDGFLKRLIEYF 632
A+ +V D + S G ++ E F
Sbjct: 1034 AQSLVAVVGDPIALCSVGRCRKFWETF 1060
>sp|Q99MV5|M10L1_MOUSE Putative helicase Mov10l1 OS=Mus musculus GN=Mov10l1 PE=1 SV=1
Length = 1187
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 140/300 (46%), Gaps = 39/300 (13%)
Query: 370 FDLVIIDEAAQALEIACWIAL-----LKGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLF 424
F V +DEA QA E C I L + G + +LAGD +QL P ++S A GL ++
Sbjct: 882 FTHVFVDEAGQASEPECLIPLGLISDING-QIVLAGDPMQLGPVIKSRLAMAYGLNVSML 940
Query: 425 ERL---------------ADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIK--AHPS 467
ERL Y + + L YR H ++ S+ Y+ +++ A P
Sbjct: 941 ERLMSRPAYLRDENAFGACGAYNPLLVTKLVKNYRSHSALLALPSRLFYHRELEVCADPK 1000
Query: 468 VAAHMLFDLEGVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHA---KR 524
V +L G ++ L+ + G E ++ S + EA M + R
Sbjct: 1001 VVTSLL----GWEKLPRKGFPLIFHGVRG--NEAREGRSPSWFSPAEAVQVMRYCCLLAR 1054
Query: 525 LIQSGVHASDIGIITPYAAQVVLLKILRSKDDKLKNMEVSTVDGFQGREKEAIIISMVRS 584
+ S V + DIG+ITPY QV +KIL D L +++V +V+ FQG+E I+IS VRS
Sbjct: 1055 SVSSQVSSKDIGVITPYRKQVEKIKILLRNVD-LTDIKVGSVEEFQGQEYLVIVISTVRS 1113
Query: 585 NSKK------EVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEY 638
N + +GFLS+ +R NVA+TR + ++ + + D L+EY + Y
Sbjct: 1114 NEDRFEDDRYFLGFLSNSKRFNVAITRPKALLIILGNPHVLVRDPCFGALLEYSVSNGVY 1173
Score = 59.7 bits (143), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 193 FNSNLDHSQKDAISKALSSKN---VFMLHGPPGTGKTTTVVEIILQ--EVKRGSKILACA 247
FN L+ +QK A+ + LS ++L GPPGTGKT T++E +LQ S+IL CA
Sbjct: 743 FNPVLNENQKLAVRRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHYALPDSRILVCA 802
Query: 248 ASNIAVDNIVERL----VPHRVRLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIR 302
SN A D + RL VP +VR+ R +++ A+ G++ AS R
Sbjct: 803 PSNSAADLVCLRLHESKVPKPAAMVRVNATCRFEETIID-AIKPYCRDGEDIWRASRFR 860
>sp|Q8R151|ZNFX1_MOUSE NFX1-type zinc finger-containing protein 1 OS=Mus musculus GN=Znfx1
PE=2 SV=3
Length = 1909
Score = 100 bits (249), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 158/333 (47%), Gaps = 21/333 (6%)
Query: 312 LLKTKDKNTRREI---QKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVSRK--LD 366
L+ +TRR I +++ RT ++ + + ++K+A+VV T TGA + L
Sbjct: 930 WLQMYQADTRRRILSYERQYRTWAERMAELRLQEDLHILKDAEVVGMTTTGAAKYRQILQ 989
Query: 367 NTSFDLVIIDEAAQALEIACWIALLKGSR-CILAGDHLQLPPTVQSVE-AEKKGLGRTLF 424
+VI++EAA+ LE L K + IL GDH QL P+ + A+ L +LF
Sbjct: 990 QVEPRIVIVEEAAEVLEAHTIATLSKACQHLILIGDHQQLRPSANVYDLAKNFNLEVSLF 1049
Query: 425 ERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSVAAHMLFDLEGVKRTSS 484
ERL + V L Q+RM I + +Y ++ HPSV + E +K SS
Sbjct: 1050 ERLVKVNIPFVR--LNYQHRMRPEIARLLTPHIYQD-LENHPSVLKY-----EQIKGVSS 1101
Query: 485 TEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQ 544
L + E++ E S N+ EA + + L+ S I I+T Y Q
Sbjct: 1102 N-----LFFVEHNFPEQEIQEGKSHQNQHEAHFVVELCQYLLCQEYLPSQITILTTYTGQ 1156
Query: 545 VVLLKILRSKDDKLKNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVT 604
+ L+ L ++V VD +QG E + I++S+VRSN + +VGFL R+ VA++
Sbjct: 1157 LFCLRKLMPVKT-FAGIKVHVVDKYQGEENDIILLSLVRSNQEGKVGFLQIPNRICVALS 1215
Query: 605 RARRQCCLVCDTETVSSDGFLKRLIEYFEEHAE 637
RA++ + + + ++ R+I E+ +
Sbjct: 1216 RAKKGMYCIGNMQMLAKVPLWSRIIHTLRENNQ 1248
Score = 37.0 bits (84), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 11/85 (12%)
Query: 197 LDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEI---------ILQEVKRGSKILACA 247
LD SQ +A+ AL+ K + ++ GPPGTGKT ++I + Q + IL
Sbjct: 591 LDDSQMEALQFALT-KELAIIQGPPGTGKTYVGLKIVQALLTNKSVWQINTQTFPILVVC 649
Query: 248 ASNIAVDNIVERLV-PHRVRLVRLG 271
+N A+D +E + + +VR+G
Sbjct: 650 YTNHALDQFLEGIYGCQKTSIVRVG 674
>sp|Q9P2E3|ZNFX1_HUMAN NFX1-type zinc finger-containing protein 1 OS=Homo sapiens GN=ZNFX1
PE=1 SV=2
Length = 1918
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 145/305 (47%), Gaps = 23/305 (7%)
Query: 312 LLKTKDKNTRREIQKELRTLSKEERKRQQLAVTD---VIKNADVVLTTLTGAVSRK--LD 366
L+ +TRR+I R + +L + + ++K+A VV T TGA + L
Sbjct: 937 WLQLYQADTRRKILSYERQYRTSAERMAELRLQEDLHILKDAQVVGMTTTGAAKYRQILQ 996
Query: 367 NTSFDLVIIDEAAQALEIACWIALLKGSR-CILAGDHLQLPPTVQSVE-AEKKGLGRTLF 424
+VI++EAA+ LE L K + IL GDH QL P+ + A+ L +LF
Sbjct: 997 KVEPRIVIVEEAAEVLEAHTIATLSKACQHLILIGDHQQLRPSANVYDLAKNFNLEVSLF 1056
Query: 425 ERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSVAAHMLFDLEGVKRTSS 484
ERL + V L Q+RM I + +Y ++ HPSV + E +K SS
Sbjct: 1057 ERLVKVNIPFVR--LNYQHRMCPEIARLLTPHIYQD-LENHPSVLKY-----EKIKGVSS 1108
Query: 485 TEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQ 544
L + E++ E S N+ EA + K + S I I+T Y Q
Sbjct: 1109 N-----LFFVEHNFPEQEIQEGKSHQNQHEAHFVVELCKYFLCQEYLPSQITILTTYTGQ 1163
Query: 545 VVLL-KILRSKDDKLKNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAV 603
+ L K++ +K + V VD +QG E + I++S+VRSN + +VGFL R+ VA+
Sbjct: 1164 LFCLRKLMPAK--TFAGVRVHVVDKYQGEENDIILLSLVRSNQEGKVGFLQISNRICVAL 1221
Query: 604 TRARR 608
+RA++
Sbjct: 1222 SRAKK 1226
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 11/85 (12%)
Query: 197 LDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEI---------ILQEVKRGSKILACA 247
LD SQ +A+ AL+ + + ++ GPPGTGKT ++I + Q + IL
Sbjct: 598 LDDSQMEALQFALT-RELAIIQGPPGTGKTYVGLKIVQALLTNESVWQISLQKFPILVVC 656
Query: 248 ASNIAVDNIVERLV-PHRVRLVRLG 271
+N A+D +E + + +VR+G
Sbjct: 657 YTNHALDQFLEGIYNCQKTSIVRVG 681
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 222,499,650
Number of Sequences: 539616
Number of extensions: 9206777
Number of successful extensions: 39700
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 94
Number of HSP's that attempted gapping in prelim test: 39259
Number of HSP's gapped (non-prelim): 269
length of query: 647
length of database: 191,569,459
effective HSP length: 124
effective length of query: 523
effective length of database: 124,657,075
effective search space: 65195650225
effective search space used: 65195650225
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)