Query 006386
Match_columns 647
No_of_seqs 432 out of 2644
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 23:39:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006386.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006386hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b3f_X DNA-binding protein smu 100.0 5E-112 2E-116 963.2 55.6 630 13-647 2-643 (646)
2 2gk6_A Regulator of nonsense t 100.0 6.8E-83 2.3E-87 719.5 51.8 593 8-642 2-612 (624)
3 2wjy_A Regulator of nonsense t 100.0 1.3E-80 4.6E-85 711.3 56.7 596 5-642 175-788 (800)
4 2xzl_A ATP-dependent helicase 100.0 7.9E-81 2.7E-85 714.3 53.0 595 5-642 177-790 (802)
5 3lfu_A DNA helicase II; SF1 he 100.0 1.3E-31 4.4E-36 305.3 24.5 315 194-545 7-360 (647)
6 3e1s_A Exodeoxyribonuclease V, 100.0 5.2E-32 1.8E-36 300.1 12.2 288 190-619 183-544 (574)
7 1pjr_A PCRA; DNA repair, DNA r 100.0 6.2E-31 2.1E-35 301.4 13.8 312 195-547 10-366 (724)
8 1uaa_A REP helicase, protein ( 100.0 6.5E-30 2.2E-34 291.7 19.4 306 196-542 2-352 (673)
9 3upu_A ATP-dependent DNA helic 100.0 1.9E-29 6.4E-34 274.5 13.2 182 195-460 24-214 (459)
10 1w36_D RECD, exodeoxyribonucle 99.9 2.7E-27 9.1E-32 265.1 17.7 339 198-618 151-585 (608)
11 3vkw_A Replicase large subunit 99.9 8.4E-25 2.9E-29 230.1 16.0 275 212-637 161-438 (446)
12 3u4q_A ATP-dependent helicase/ 99.9 4.9E-22 1.7E-26 239.5 22.2 66 194-262 8-79 (1232)
13 1w36_B RECB, exodeoxyribonucle 99.8 1.7E-19 5.9E-24 216.8 20.9 83 369-460 377-464 (1180)
14 3dmn_A Putative DNA helicase; 99.6 8.6E-16 2.9E-20 143.7 9.0 142 440-617 2-155 (174)
15 3u4q_B ATP-dependent helicase/ 99.5 2.2E-13 7.5E-18 164.2 18.3 145 371-553 203-364 (1166)
16 2fz4_A DNA repair protein RAD2 98.9 7.1E-09 2.4E-13 101.8 13.1 74 194-271 91-165 (237)
17 3b6e_A Interferon-induced heli 98.9 2.8E-09 9.5E-14 102.8 10.0 67 194-261 31-104 (216)
18 2gxq_A Heat resistant RNA depe 98.9 1.4E-08 4.8E-13 97.2 12.4 68 195-263 22-95 (207)
19 2pl3_A Probable ATP-dependent 98.8 4.3E-08 1.5E-12 96.0 12.9 68 195-263 46-120 (236)
20 1qde_A EIF4A, translation init 98.8 2.8E-08 9.6E-13 96.5 11.0 68 195-263 35-105 (224)
21 3iuy_A Probable ATP-dependent 98.8 4.3E-08 1.5E-12 95.5 11.9 68 195-263 41-117 (228)
22 1vec_A ATP-dependent RNA helic 98.7 5.3E-08 1.8E-12 93.1 12.3 68 195-263 24-94 (206)
23 1rif_A DAR protein, DNA helica 98.7 2.8E-08 9.4E-13 100.3 10.6 68 195-263 112-180 (282)
24 1hv8_A Putative ATP-dependent 98.7 5.4E-08 1.8E-12 101.7 13.0 69 195-263 27-97 (367)
25 1t6n_A Probable ATP-dependent 98.7 8.7E-08 3E-12 92.7 12.9 68 195-263 35-105 (220)
26 3ber_A Probable ATP-dependent 98.7 1.2E-07 4.2E-12 93.6 13.6 68 195-263 64-134 (249)
27 3bor_A Human initiation factor 98.7 4.8E-08 1.6E-12 95.8 9.9 68 195-263 51-121 (237)
28 3fe2_A Probable ATP-dependent 98.7 1.6E-07 5.4E-12 92.4 13.5 68 195-263 50-125 (242)
29 1wrb_A DJVLGB; RNA helicase, D 98.7 1.8E-07 6.1E-12 92.6 13.1 68 195-263 44-123 (253)
30 3ly5_A ATP-dependent RNA helic 98.7 1.4E-07 4.7E-12 94.0 12.3 68 195-263 75-149 (262)
31 3oiy_A Reverse gyrase helicase 98.6 1.1E-07 3.8E-12 101.4 12.4 67 196-263 21-87 (414)
32 2oxc_A Probable ATP-dependent 98.6 1.4E-07 4.8E-12 92.0 11.6 68 195-263 45-115 (230)
33 3h1t_A Type I site-specific re 98.6 9.9E-08 3.4E-12 106.8 11.6 70 195-264 177-260 (590)
34 2z0m_A 337AA long hypothetical 98.6 1.8E-07 6.3E-12 96.4 12.7 65 195-263 15-79 (337)
35 2fwr_A DNA repair protein RAD2 98.6 1.2E-07 4.2E-12 102.9 11.9 73 194-270 91-164 (472)
36 1s2m_A Putative ATP-dependent 98.6 1.6E-07 5.3E-12 99.6 12.4 68 195-263 42-112 (400)
37 1wp9_A ATP-dependent RNA helic 98.6 3.3E-07 1.1E-11 99.3 14.3 67 195-263 8-75 (494)
38 1q0u_A Bstdead; DEAD protein, 98.6 5.6E-08 1.9E-12 94.1 7.1 68 195-263 25-95 (219)
39 2zpa_A Uncharacterized protein 98.6 1.5E-07 5.1E-12 104.0 10.4 160 193-458 172-335 (671)
40 2oca_A DAR protein, ATP-depend 98.6 1.2E-07 4E-12 104.2 9.5 68 195-263 112-180 (510)
41 4a2p_A RIG-I, retinoic acid in 98.5 3.5E-07 1.2E-11 101.4 13.1 68 195-263 6-78 (556)
42 2j0s_A ATP-dependent RNA helic 98.5 4.9E-07 1.7E-11 96.1 12.5 68 195-263 58-128 (410)
43 1fuu_A Yeast initiation factor 98.5 3.6E-07 1.2E-11 96.5 11.2 68 195-263 42-112 (394)
44 3tbk_A RIG-I helicase domain; 98.5 4.8E-07 1.6E-11 100.1 12.8 68 195-263 3-75 (555)
45 1xti_A Probable ATP-dependent 98.5 5.6E-07 1.9E-11 94.9 12.7 68 195-263 29-99 (391)
46 3dkp_A Probable ATP-dependent 98.5 2E-07 6.8E-12 91.8 8.6 68 195-263 50-121 (245)
47 3pey_A ATP-dependent RNA helic 98.5 4.7E-07 1.6E-11 95.5 11.4 69 195-263 26-98 (395)
48 1gm5_A RECG; helicase, replica 98.5 9.2E-07 3.2E-11 100.9 14.0 70 194-263 366-440 (780)
49 3eiq_A Eukaryotic initiation f 98.5 6.1E-07 2.1E-11 95.4 11.6 68 195-263 61-131 (414)
50 2i4i_A ATP-dependent RNA helic 98.5 9E-07 3.1E-11 94.2 12.7 68 195-263 36-124 (417)
51 4a2q_A RIG-I, retinoic acid in 98.4 1E-06 3.5E-11 102.0 12.6 69 194-263 246-319 (797)
52 2va8_A SSO2462, SKI2-type heli 98.4 7.5E-07 2.6E-11 102.0 11.2 68 195-262 29-97 (715)
53 4a4z_A Antiviral helicase SKI2 98.4 1.2E-06 4E-11 103.2 11.9 71 192-263 35-105 (997)
54 4gl2_A Interferon-induced heli 98.4 4.8E-07 1.6E-11 103.4 8.2 68 195-263 6-80 (699)
55 3l9o_A ATP-dependent RNA helic 98.4 8.6E-07 2.9E-11 105.3 10.5 71 192-263 180-250 (1108)
56 2zj8_A DNA helicase, putative 98.4 8.1E-07 2.8E-11 101.8 9.9 68 195-262 22-90 (720)
57 2xgj_A ATP-dependent RNA helic 98.3 1.3E-06 4.3E-11 102.9 11.5 70 193-263 83-152 (1010)
58 2ykg_A Probable ATP-dependent 98.3 2.1E-06 7E-11 98.1 12.9 68 195-263 12-84 (696)
59 2db3_A ATP-dependent RNA helic 98.3 2.5E-06 8.5E-11 91.5 12.8 68 195-263 77-152 (434)
60 3fht_A ATP-dependent RNA helic 98.3 1.3E-06 4.4E-11 92.7 10.0 69 195-263 46-118 (412)
61 4ddu_A Reverse gyrase; topoiso 98.3 2.1E-06 7.1E-11 102.0 12.6 67 196-263 78-144 (1104)
62 2eyq_A TRCF, transcription-rep 98.3 7.8E-06 2.7E-10 97.7 17.0 70 193-262 600-674 (1151)
63 3llm_A ATP-dependent RNA helic 98.3 3.1E-06 1.1E-10 82.7 11.1 66 196-262 61-131 (235)
64 2p6r_A Afuhel308 helicase; pro 98.3 7.7E-07 2.6E-11 101.6 7.9 67 195-262 24-90 (702)
65 3fho_A ATP-dependent RNA helic 98.3 5.5E-07 1.9E-11 98.7 5.9 68 196-263 141-212 (508)
66 4a2w_A RIG-I, retinoic acid in 98.3 1.6E-06 5.6E-11 101.7 10.1 68 195-263 247-319 (936)
67 3fmo_B ATP-dependent RNA helic 98.2 2.6E-06 8.8E-11 86.5 9.4 69 195-263 113-185 (300)
68 2l8b_A Protein TRAI, DNA helic 98.2 6.1E-06 2.1E-10 75.2 10.4 63 198-260 36-100 (189)
69 3i5x_A ATP-dependent RNA helic 98.2 6.9E-06 2.4E-10 91.2 12.6 68 195-262 93-168 (563)
70 3fmp_B ATP-dependent RNA helic 98.2 2.4E-06 8.2E-11 92.9 8.4 68 195-262 113-184 (479)
71 3sqw_A ATP-dependent RNA helic 98.2 7.3E-06 2.5E-10 91.3 12.4 68 195-262 42-117 (579)
72 3dmq_A RNA polymerase-associat 98.2 9.5E-06 3.2E-10 95.5 13.4 149 194-404 151-318 (968)
73 3crv_A XPD/RAD3 related DNA he 98.1 7.6E-06 2.6E-10 90.5 10.9 65 196-263 3-70 (551)
74 1z63_A Helicase of the SNF2/RA 98.1 5.5E-06 1.9E-10 90.6 9.6 143 193-404 34-189 (500)
75 2b8t_A Thymidine kinase; deoxy 98.1 4.9E-06 1.7E-10 80.0 7.8 39 212-250 12-50 (223)
76 1gku_B Reverse gyrase, TOP-RG; 98.1 7.4E-06 2.5E-10 97.2 10.7 65 197-263 58-122 (1054)
77 1oyw_A RECQ helicase, ATP-depe 98.0 2.6E-05 8.8E-10 85.6 12.0 73 195-271 24-96 (523)
78 3kl4_A SRP54, signal recogniti 98.0 4E-05 1.4E-09 81.0 12.4 46 213-258 98-146 (433)
79 1z3i_X Similar to RAD54-like; 97.9 9.9E-05 3.4E-09 83.0 15.7 149 194-404 53-232 (644)
80 2v1x_A ATP-dependent DNA helic 97.9 2.7E-05 9.2E-10 86.5 10.9 73 195-271 43-115 (591)
81 1g5t_A COB(I)alamin adenosyltr 97.9 0.00014 4.6E-09 67.9 13.8 59 211-272 27-89 (196)
82 2j9r_A Thymidine kinase; TK1, 97.9 2.1E-05 7.3E-10 74.5 8.3 38 213-250 29-66 (214)
83 2w00_A HSDR, R.ECOR124I; ATP-b 97.9 2.5E-05 8.7E-10 91.6 10.6 68 196-263 271-353 (1038)
84 2jlq_A Serine protease subunit 97.9 8.2E-06 2.8E-10 87.9 5.4 60 204-263 11-71 (451)
85 2vl7_A XPD; helicase, unknown 97.9 2.4E-05 8.1E-10 86.2 9.1 75 196-273 7-84 (540)
86 4f92_B U5 small nuclear ribonu 97.9 3.9E-05 1.3E-09 94.7 11.5 67 195-261 925-993 (1724)
87 3dm5_A SRP54, signal recogniti 97.9 8.9E-05 3E-09 78.4 12.7 56 213-268 101-159 (443)
88 1xx6_A Thymidine kinase; NESG, 97.8 2.6E-05 9E-10 73.1 7.4 38 213-250 9-46 (191)
89 2z83_A Helicase/nucleoside tri 97.8 4.3E-05 1.5E-09 82.4 9.6 55 209-263 18-73 (459)
90 1w4r_A Thymidine kinase; type 97.8 3E-05 1E-09 72.3 7.2 38 212-249 20-57 (195)
91 1yks_A Genome polyprotein [con 97.8 6.5E-05 2.2E-09 80.5 10.4 55 211-265 7-62 (440)
92 3o8b_A HCV NS3 protease/helica 97.8 1.2E-05 4.2E-10 89.3 4.4 52 209-263 229-280 (666)
93 2wv9_A Flavivirin protease NS2 97.8 4.2E-05 1.4E-09 86.0 8.7 62 203-264 227-294 (673)
94 2xau_A PRE-mRNA-splicing facto 97.7 3.6E-05 1.2E-09 88.2 7.6 65 198-262 95-162 (773)
95 4f92_B U5 small nuclear ribonu 97.7 9.2E-05 3.2E-09 91.4 10.9 67 195-261 78-155 (1724)
96 2orv_A Thymidine kinase; TP4A 97.6 0.00014 4.9E-09 69.4 9.2 39 212-250 19-57 (234)
97 3mwy_W Chromo domain-containin 97.6 0.00014 4.7E-09 84.1 10.5 159 194-404 234-407 (800)
98 3e2i_A Thymidine kinase; Zn-bi 97.6 0.00017 5.7E-09 68.1 8.5 39 212-250 28-66 (219)
99 2v6i_A RNA helicase; membrane, 97.6 0.00013 4.5E-09 77.9 8.8 51 212-262 2-53 (431)
100 3ec2_A DNA replication protein 97.5 0.00014 4.7E-09 67.5 7.3 50 198-247 16-74 (180)
101 1vma_A Cell division protein F 97.5 0.00045 1.5E-08 69.8 11.4 35 213-247 105-139 (306)
102 2whx_A Serine protease/ntpase/ 97.5 0.00018 6E-09 80.3 8.7 59 204-263 179-238 (618)
103 3rc3_A ATP-dependent RNA helic 97.4 0.00015 5.3E-09 81.3 6.8 52 212-267 155-206 (677)
104 2w58_A DNAI, primosome compone 97.3 0.00038 1.3E-08 65.7 6.8 35 213-247 55-89 (202)
105 2v1u_A Cell division control p 97.3 0.0011 3.7E-08 69.3 10.9 41 198-238 24-70 (387)
106 1a5t_A Delta prime, HOLB; zinc 97.2 0.00092 3.1E-08 68.7 9.6 26 214-239 26-51 (334)
107 2v3c_C SRP54, signal recogniti 97.2 0.00067 2.3E-08 72.0 8.2 35 214-248 101-135 (432)
108 2gno_A DNA polymerase III, gam 97.2 0.00094 3.2E-08 67.5 8.7 44 369-412 82-132 (305)
109 3bos_A Putative DNA replicatio 97.1 0.0008 2.7E-08 65.1 7.7 53 196-248 34-88 (242)
110 1zu4_A FTSY; GTPase, signal re 97.1 0.0033 1.1E-07 63.9 12.1 35 213-247 106-140 (320)
111 2orw_A Thymidine kinase; TMTK, 97.1 0.00054 1.9E-08 63.8 5.7 38 212-249 3-40 (184)
112 1j8m_F SRP54, signal recogniti 97.1 0.0027 9.4E-08 63.8 11.3 35 214-248 100-134 (297)
113 1tf5_A Preprotein translocase 97.1 0.0035 1.2E-07 70.8 13.1 64 196-262 83-146 (844)
114 2kjq_A DNAA-related protein; s 97.0 0.0006 2.1E-08 61.1 5.3 52 193-246 19-70 (149)
115 3te6_A Regulatory protein SIR3 97.0 0.00053 1.8E-08 69.4 5.1 28 211-238 44-71 (318)
116 2fsf_A Preprotein translocase 97.0 0.0033 1.1E-07 70.8 11.9 65 195-262 73-137 (853)
117 3n70_A Transport activator; si 97.0 0.00057 1.9E-08 60.9 4.5 34 210-243 22-55 (145)
118 2dr3_A UPF0273 protein PH0284; 96.9 0.0011 3.8E-08 64.5 6.6 52 211-263 22-73 (247)
119 2xxa_A Signal recognition part 96.9 0.0032 1.1E-07 66.7 10.4 43 214-256 102-148 (433)
120 1jbk_A CLPB protein; beta barr 96.9 0.0019 6.6E-08 59.7 7.8 40 199-238 28-69 (195)
121 2qgz_A Helicase loader, putati 96.9 0.0014 4.7E-08 66.5 7.1 37 212-248 152-189 (308)
122 1nkt_A Preprotein translocase 96.9 0.0041 1.4E-07 70.3 11.4 64 196-262 111-174 (922)
123 1ls1_A Signal recognition part 96.9 0.0044 1.5E-07 62.3 10.7 35 213-247 99-133 (295)
124 2ipc_A Preprotein translocase 96.8 0.0031 1.1E-07 71.2 9.4 64 196-262 79-142 (997)
125 1tue_A Replication protein E1; 96.8 0.00095 3.2E-08 62.5 4.3 23 214-236 60-82 (212)
126 2p65_A Hypothetical protein PF 96.8 0.002 6.9E-08 59.3 6.7 40 199-238 28-69 (187)
127 2j37_W Signal recognition part 96.7 0.0072 2.5E-07 65.1 11.6 44 214-257 103-149 (504)
128 2r8r_A Sensor protein; KDPD, P 96.7 0.0015 5E-08 62.4 5.1 34 214-247 8-41 (228)
129 1l8q_A Chromosomal replication 96.7 0.0034 1.2E-07 64.0 8.1 36 213-248 38-73 (324)
130 2r2a_A Uncharacterized protein 96.6 0.0011 3.6E-08 62.6 3.5 34 213-246 6-45 (199)
131 2o0j_A Terminase, DNA packagin 96.5 0.015 5.2E-07 60.4 12.0 66 195-261 162-229 (385)
132 2ffh_A Protein (FFH); SRP54, s 96.5 0.011 3.9E-07 62.1 11.1 35 213-247 99-133 (425)
133 4a15_A XPD helicase, ATP-depen 96.4 0.0052 1.8E-07 68.5 8.3 65 198-262 5-73 (620)
134 3co5_A Putative two-component 96.4 0.0014 4.9E-08 58.1 2.8 24 210-233 25-48 (143)
135 1ofh_A ATP-dependent HSL prote 96.4 0.0042 1.4E-07 62.6 6.6 25 212-236 50-74 (310)
136 2qby_B CDC6 homolog 3, cell di 96.4 0.0066 2.3E-07 63.2 8.2 41 199-239 26-72 (384)
137 2bjv_A PSP operon transcriptio 96.3 0.0032 1.1E-07 62.2 5.4 37 210-246 27-63 (265)
138 1njg_A DNA polymerase III subu 96.3 0.0037 1.3E-07 60.1 5.6 42 198-239 28-72 (250)
139 2chg_A Replication factor C sm 96.3 0.0041 1.4E-07 59.0 5.8 42 198-239 22-65 (226)
140 3h4m_A Proteasome-activating n 96.3 0.0032 1.1E-07 62.8 5.3 24 212-235 51-74 (285)
141 2w0m_A SSO2452; RECA, SSPF, un 96.3 0.0048 1.6E-07 59.2 6.1 50 211-261 22-71 (235)
142 2qz4_A Paraplegin; AAA+, SPG7, 96.3 0.0048 1.6E-07 60.5 6.2 24 213-236 40-63 (262)
143 3bh0_A DNAB-like replicative h 96.3 0.005 1.7E-07 62.5 6.3 52 209-261 65-116 (315)
144 4dzz_A Plasmid partitioning pr 96.2 0.034 1.2E-06 52.1 11.7 35 214-248 4-38 (206)
145 3hr8_A Protein RECA; alpha and 96.2 0.0037 1.3E-07 64.3 5.0 49 212-260 61-109 (356)
146 3syl_A Protein CBBX; photosynt 96.1 0.0051 1.7E-07 62.1 5.8 28 213-240 68-95 (309)
147 3io5_A Recombination and repai 96.1 0.004 1.4E-07 62.4 4.6 49 212-260 28-78 (333)
148 2zr9_A Protein RECA, recombina 96.1 0.0047 1.6E-07 63.6 5.2 42 211-252 60-101 (349)
149 4b4t_M 26S protease regulatory 96.1 0.0028 9.7E-08 66.8 3.6 34 213-249 216-249 (434)
150 1sxj_C Activator 1 40 kDa subu 96.1 0.0056 1.9E-07 62.9 5.7 41 198-238 30-72 (340)
151 3t15_A Ribulose bisphosphate c 96.1 0.0033 1.1E-07 63.2 3.9 32 213-247 37-68 (293)
152 1u94_A RECA protein, recombina 96.0 0.0054 1.9E-07 63.2 5.3 41 211-251 62-102 (356)
153 4fcw_A Chaperone protein CLPB; 96.0 0.005 1.7E-07 62.2 5.0 34 213-246 48-81 (311)
154 4b4t_K 26S protease regulatory 96.0 0.0033 1.1E-07 66.3 3.5 33 214-249 208-240 (428)
155 1xjc_A MOBB protein homolog; s 96.0 0.0073 2.5E-07 55.0 5.4 39 213-251 5-43 (169)
156 2r44_A Uncharacterized protein 96.0 0.0041 1.4E-07 63.6 4.2 36 201-236 35-70 (331)
157 4b4t_J 26S protease regulatory 96.0 0.0034 1.2E-07 65.3 3.5 33 213-248 183-215 (405)
158 2z4s_A Chromosomal replication 96.0 0.012 4E-07 62.8 7.8 36 213-248 131-168 (440)
159 3b9p_A CG5977-PA, isoform A; A 96.0 0.0051 1.7E-07 61.8 4.7 24 212-235 54-77 (297)
160 2px0_A Flagellar biosynthesis 95.9 0.0067 2.3E-07 60.9 5.4 36 212-247 105-141 (296)
161 4b4t_L 26S protease subunit RP 95.9 0.0037 1.3E-07 66.0 3.6 33 213-248 216-248 (437)
162 1hqc_A RUVB; extended AAA-ATPa 95.9 0.032 1.1E-06 56.5 10.6 47 213-262 39-86 (324)
163 1xp8_A RECA protein, recombina 95.9 0.0066 2.3E-07 62.8 5.2 49 211-259 73-121 (366)
164 2zts_A Putative uncharacterize 95.9 0.0062 2.1E-07 59.1 4.9 52 211-263 29-81 (251)
165 3u61_B DNA polymerase accessor 95.8 0.0092 3.1E-07 60.7 6.1 51 197-250 30-83 (324)
166 4a1f_A DNAB helicase, replicat 95.8 0.01 3.6E-07 60.4 6.4 51 210-261 44-94 (338)
167 3eie_A Vacuolar protein sortin 95.8 0.0093 3.2E-07 60.7 5.8 23 213-235 52-74 (322)
168 4b4t_I 26S protease regulatory 95.8 0.0049 1.7E-07 64.4 3.6 32 213-247 217-248 (437)
169 1sxj_D Activator 1 41 kDa subu 95.7 0.0056 1.9E-07 63.0 4.0 37 201-237 45-83 (353)
170 3cf0_A Transitional endoplasmi 95.7 0.009 3.1E-07 60.2 5.4 25 212-236 49-73 (301)
171 1lv7_A FTSH; alpha/beta domain 95.7 0.0086 2.9E-07 58.7 5.0 24 213-236 46-69 (257)
172 1xwi_A SKD1 protein; VPS4B, AA 95.7 0.0095 3.2E-07 60.7 5.4 24 213-236 46-69 (322)
173 1in4_A RUVB, holliday junction 95.7 0.0076 2.6E-07 61.7 4.7 24 213-236 52-75 (334)
174 1fnn_A CDC6P, cell division co 95.7 0.013 4.5E-07 60.9 6.7 49 198-246 22-79 (389)
175 3hws_A ATP-dependent CLP prote 95.7 0.0087 3E-07 62.0 5.2 25 212-236 51-75 (363)
176 2yhs_A FTSY, cell division pro 95.6 0.04 1.4E-06 58.7 10.1 45 213-257 294-341 (503)
177 2qby_A CDC6 homolog 1, cell di 95.6 0.012 4E-07 61.1 6.0 49 198-246 25-82 (386)
178 1c4o_A DNA nucleotide excision 95.6 0.025 8.4E-07 63.6 8.9 65 196-263 8-76 (664)
179 1iqp_A RFCS; clamp loader, ext 95.6 0.011 3.8E-07 59.9 5.6 40 198-237 30-71 (327)
180 4b4t_H 26S protease regulatory 95.6 0.0053 1.8E-07 64.8 3.1 33 213-248 244-276 (467)
181 1p9r_A General secretion pathw 95.6 0.013 4.5E-07 61.7 6.2 51 196-246 150-201 (418)
182 3uk6_A RUVB-like 2; hexameric 95.6 0.012 4E-07 61.1 5.8 25 213-237 71-95 (368)
183 3pvs_A Replication-associated 95.6 0.012 4.1E-07 62.7 6.0 41 213-256 51-91 (447)
184 1sxj_A Activator 1 95 kDa subu 95.6 0.015 5.2E-07 63.3 6.8 32 213-247 78-109 (516)
185 2z0h_A DTMP kinase, thymidylat 95.5 0.013 4.3E-07 54.6 5.3 33 214-246 2-34 (197)
186 1nks_A Adenylate kinase; therm 95.5 0.011 3.9E-07 54.7 4.9 33 214-246 3-35 (194)
187 1cr0_A DNA primase/helicase; R 95.5 0.017 5.7E-07 58.0 6.5 50 210-260 33-83 (296)
188 2qp9_X Vacuolar protein sortin 95.5 0.011 3.7E-07 61.1 5.0 24 213-236 85-108 (355)
189 3pfi_A Holliday junction ATP-d 95.5 0.039 1.3E-06 56.3 9.1 23 213-235 56-78 (338)
190 2z43_A DNA repair and recombin 95.4 0.011 3.8E-07 60.2 4.8 50 211-260 106-162 (324)
191 3bgw_A DNAB-like replicative h 95.4 0.014 4.9E-07 62.1 5.8 50 211-261 196-245 (444)
192 2vhj_A Ntpase P4, P4; non- hyd 95.4 0.0096 3.3E-07 59.9 4.1 34 212-248 123-156 (331)
193 2cvh_A DNA repair and recombin 95.4 0.012 4.1E-07 55.8 4.7 36 211-249 19-54 (220)
194 3a4m_A L-seryl-tRNA(SEC) kinas 95.4 0.014 4.9E-07 57.3 5.3 35 213-247 5-39 (260)
195 2r6a_A DNAB helicase, replicat 95.4 0.019 6.4E-07 61.5 6.6 50 211-261 202-252 (454)
196 2yvu_A Probable adenylyl-sulfa 95.4 0.015 5.3E-07 53.7 5.2 34 213-246 14-47 (186)
197 1nlf_A Regulatory protein REPA 95.4 0.02 6.7E-07 56.9 6.3 49 211-260 29-87 (279)
198 1d2n_A N-ethylmaleimide-sensit 95.4 0.0084 2.9E-07 59.4 3.6 23 213-235 65-87 (272)
199 3kb2_A SPBC2 prophage-derived 95.4 0.0096 3.3E-07 54.1 3.7 23 214-236 3-25 (173)
200 1w36_C RECC, exodeoxyribonucle 95.4 0.0057 2E-07 73.0 2.7 77 558-634 656-757 (1122)
201 2zan_A Vacuolar protein sortin 95.3 0.021 7.1E-07 60.9 6.8 33 213-247 168-200 (444)
202 3p32_A Probable GTPase RV1496/ 95.3 0.019 6.4E-07 59.3 6.2 36 213-248 80-115 (355)
203 2r62_A Cell division protease 95.3 0.0054 1.8E-07 60.6 2.0 24 213-236 45-68 (268)
204 1u0j_A DNA replication protein 95.3 0.022 7.5E-07 55.7 6.2 41 195-235 82-127 (267)
205 1ojl_A Transcriptional regulat 95.3 0.011 3.8E-07 59.6 4.1 26 211-236 24-49 (304)
206 1q57_A DNA primase/helicase; d 95.2 0.014 4.8E-07 63.4 5.1 50 211-261 241-291 (503)
207 2chq_A Replication factor C sm 95.2 0.014 4.7E-07 59.0 4.7 41 198-238 22-64 (319)
208 2c9o_A RUVB-like 1; hexameric 95.2 0.019 6.3E-07 61.6 6.0 24 213-236 64-87 (456)
209 1qhx_A CPT, protein (chloramph 95.2 0.01 3.4E-07 54.4 3.3 24 213-236 4-27 (178)
210 3nbx_X ATPase RAVA; AAA+ ATPas 95.2 0.013 4.4E-07 63.3 4.4 34 203-236 32-65 (500)
211 2pbr_A DTMP kinase, thymidylat 95.2 0.02 6.8E-07 53.1 5.3 33 214-246 2-34 (195)
212 1jr3_A DNA polymerase III subu 95.1 0.018 6E-07 59.7 5.4 40 198-237 21-63 (373)
213 3d8b_A Fidgetin-like protein 1 95.1 0.015 5.1E-07 60.1 4.8 25 212-236 117-141 (357)
214 1np6_A Molybdopterin-guanine d 95.1 0.024 8.3E-07 51.9 5.4 37 212-248 6-42 (174)
215 1v5w_A DMC1, meiotic recombina 95.0 0.015 5.3E-07 59.6 4.4 51 211-261 121-178 (343)
216 2q6t_A DNAB replication FORK h 95.0 0.028 9.5E-07 60.0 6.6 50 211-261 199-249 (444)
217 2x8a_A Nuclear valosin-contain 95.0 0.011 3.6E-07 58.8 3.1 21 215-235 47-67 (274)
218 1yrb_A ATP(GTP)binding protein 95.0 0.017 5.8E-07 56.6 4.6 35 212-247 14-48 (262)
219 1sxj_B Activator 1 37 kDa subu 95.0 0.021 7E-07 57.8 5.3 40 199-238 27-68 (323)
220 3vfd_A Spastin; ATPase, microt 95.0 0.02 6.8E-07 59.9 5.3 23 213-235 149-171 (389)
221 2ehv_A Hypothetical protein PH 95.0 0.021 7.2E-07 55.4 5.1 39 211-249 29-68 (251)
222 3vaa_A Shikimate kinase, SK; s 95.0 0.017 5.6E-07 54.2 4.1 25 212-236 25-49 (199)
223 3trf_A Shikimate kinase, SK; a 95.0 0.016 5.6E-07 53.4 4.1 25 212-236 5-29 (185)
224 1w5s_A Origin recognition comp 94.9 0.023 8E-07 59.6 5.7 27 212-238 50-78 (412)
225 1kht_A Adenylate kinase; phosp 94.9 0.016 5.3E-07 53.7 3.7 28 213-240 4-31 (192)
226 1ly1_A Polynucleotide kinase; 94.9 0.014 4.9E-07 53.3 3.4 21 214-234 4-24 (181)
227 1n0w_A DNA repair protein RAD5 94.9 0.022 7.4E-07 55.0 4.8 40 211-250 23-68 (243)
228 3lw7_A Adenylate kinase relate 94.8 0.015 5E-07 52.8 3.2 29 213-245 2-30 (179)
229 2rhm_A Putative kinase; P-loop 94.8 0.017 5.9E-07 53.5 3.7 24 213-236 6-29 (193)
230 1ixz_A ATP-dependent metallopr 94.8 0.013 4.6E-07 57.2 3.0 21 215-235 52-72 (254)
231 3cmu_A Protein RECA, recombina 94.8 0.06 2.1E-06 66.7 9.2 47 205-251 1415-1466(2050)
232 3iij_A Coilin-interacting nucl 94.7 0.02 6.7E-07 52.6 4.0 25 212-236 11-35 (180)
233 3bs4_A Uncharacterized protein 94.7 0.023 8E-07 55.5 4.6 52 212-264 21-72 (260)
234 3pxg_A Negative regulator of g 94.7 0.029 9.9E-07 60.2 5.8 40 199-238 186-227 (468)
235 1g8p_A Magnesium-chelatase 38 94.7 0.015 5.2E-07 59.6 3.5 25 212-236 45-69 (350)
236 2plr_A DTMP kinase, probable t 94.7 0.037 1.3E-06 52.0 5.9 30 213-243 5-34 (213)
237 1nn5_A Similar to deoxythymidy 94.7 0.034 1.2E-06 52.4 5.6 34 212-245 9-42 (215)
238 3e70_C DPA, signal recognition 94.7 0.027 9.1E-07 57.3 5.0 47 212-258 129-178 (328)
239 1um8_A ATP-dependent CLP prote 94.6 0.016 5.6E-07 60.3 3.4 25 212-236 72-96 (376)
240 3ug7_A Arsenical pump-driving 94.6 0.03 1E-06 57.6 5.2 39 212-250 26-64 (349)
241 3bfv_A CAPA1, CAPB2, membrane 94.5 0.065 2.2E-06 52.9 7.4 34 213-246 83-117 (271)
242 1sxj_E Activator 1 40 kDa subu 94.5 0.023 7.9E-07 58.4 4.3 42 198-239 19-63 (354)
243 1rj9_A FTSY, signal recognitio 94.5 0.034 1.2E-06 55.9 5.4 37 212-248 102-138 (304)
244 3b9q_A Chloroplast SRP recepto 94.5 0.033 1.1E-06 56.0 5.2 35 213-247 101-135 (302)
245 1kag_A SKI, shikimate kinase I 94.5 0.02 6.9E-07 52.1 3.3 23 213-235 5-27 (173)
246 3cm0_A Adenylate kinase; ATP-b 94.5 0.023 7.9E-07 52.4 3.7 23 214-236 6-28 (186)
247 2iyv_A Shikimate kinase, SK; t 94.5 0.023 8E-07 52.3 3.8 24 213-236 3-26 (184)
248 3zq6_A Putative arsenical pump 94.5 0.033 1.1E-06 56.7 5.2 37 213-249 15-51 (324)
249 1tev_A UMP-CMP kinase; ploop, 94.4 0.024 8.1E-07 52.6 3.7 24 213-236 4-27 (196)
250 2c95_A Adenylate kinase 1; tra 94.4 0.026 8.8E-07 52.5 4.0 25 212-236 9-33 (196)
251 3umf_A Adenylate kinase; rossm 94.4 0.016 5.4E-07 55.2 2.5 25 212-236 29-53 (217)
252 1zuh_A Shikimate kinase; alpha 94.4 0.026 8.9E-07 51.1 3.9 24 213-236 8-31 (168)
253 2ze6_A Isopentenyl transferase 94.4 0.023 7.9E-07 55.6 3.7 23 214-236 3-25 (253)
254 1via_A Shikimate kinase; struc 94.4 0.023 8E-07 51.9 3.5 23 214-236 6-28 (175)
255 2cdn_A Adenylate kinase; phosp 94.4 0.025 8.4E-07 53.0 3.7 23 214-236 22-44 (201)
256 2oap_1 GSPE-2, type II secreti 94.4 0.03 1E-06 60.6 4.9 48 197-245 245-292 (511)
257 4edh_A DTMP kinase, thymidylat 94.4 0.038 1.3E-06 52.5 5.0 35 212-246 6-40 (213)
258 1c9k_A COBU, adenosylcobinamid 94.3 0.012 4.2E-07 54.0 1.5 46 214-263 1-46 (180)
259 1iy2_A ATP-dependent metallopr 94.3 0.02 6.7E-07 56.9 3.0 21 215-235 76-96 (278)
260 2wwf_A Thymidilate kinase, put 94.3 0.046 1.6E-06 51.4 5.5 32 212-243 10-41 (212)
261 2qen_A Walker-type ATPase; unk 94.3 0.037 1.3E-06 56.4 5.3 38 199-236 18-55 (350)
262 3fb4_A Adenylate kinase; psych 94.3 0.026 9E-07 53.5 3.8 22 215-236 3-24 (216)
263 3sr0_A Adenylate kinase; phosp 94.2 0.028 9.5E-07 53.1 3.8 23 214-236 2-24 (206)
264 1zp6_A Hypothetical protein AT 94.2 0.022 7.5E-07 52.8 3.0 24 212-235 9-32 (191)
265 2bwj_A Adenylate kinase 5; pho 94.2 0.029 1E-06 52.2 3.9 25 212-236 12-36 (199)
266 4eun_A Thermoresistant glucoki 94.2 0.032 1.1E-06 52.2 4.1 25 212-236 29-53 (200)
267 3t61_A Gluconokinase; PSI-biol 94.2 0.027 9.1E-07 52.8 3.6 24 213-236 19-42 (202)
268 1qf9_A UMP/CMP kinase, protein 94.2 0.028 9.6E-07 52.0 3.7 24 213-236 7-30 (194)
269 1zak_A Adenylate kinase; ATP:A 94.2 0.029 1E-06 53.5 3.8 24 213-236 6-29 (222)
270 1e6c_A Shikimate kinase; phosp 94.2 0.029 1E-06 50.9 3.7 24 213-236 3-26 (173)
271 1gvn_B Zeta; postsegregational 94.1 0.023 7.8E-07 56.7 3.1 24 213-236 34-57 (287)
272 2fna_A Conserved hypothetical 94.1 0.043 1.5E-06 56.1 5.3 36 199-236 19-54 (357)
273 3jvv_A Twitching mobility prot 94.1 0.04 1.4E-06 56.7 4.9 36 211-246 122-158 (356)
274 2og2_A Putative signal recogni 94.1 0.044 1.5E-06 56.3 5.2 35 213-247 158-192 (359)
275 3cio_A ETK, tyrosine-protein k 94.1 0.082 2.8E-06 53.0 7.1 35 213-247 105-140 (299)
276 2i1q_A DNA repair and recombin 94.1 0.027 9.1E-07 57.3 3.5 50 211-260 97-163 (322)
277 2jaq_A Deoxyguanosine kinase; 94.0 0.032 1.1E-06 52.1 3.7 23 214-236 2-24 (205)
278 1gtv_A TMK, thymidylate kinase 94.0 0.017 5.9E-07 54.6 1.9 33 214-246 2-34 (214)
279 1aky_A Adenylate kinase; ATP:A 94.0 0.032 1.1E-06 53.1 3.7 24 213-236 5-28 (220)
280 3dl0_A Adenylate kinase; phosp 94.0 0.026 8.8E-07 53.5 3.1 21 215-235 3-23 (216)
281 1g41_A Heat shock protein HSLU 94.0 0.047 1.6E-06 57.6 5.3 24 213-236 51-74 (444)
282 1y63_A LMAJ004144AAA protein; 94.0 0.036 1.2E-06 51.2 3.9 24 212-235 10-33 (184)
283 2pez_A Bifunctional 3'-phospho 94.0 0.057 1.9E-06 49.4 5.2 34 213-246 6-39 (179)
284 4ag6_A VIRB4 ATPase, type IV s 94.0 0.053 1.8E-06 56.7 5.7 58 211-272 34-91 (392)
285 3uie_A Adenylyl-sulfate kinase 94.0 0.054 1.8E-06 50.7 5.2 47 194-242 9-55 (200)
286 1knq_A Gluconate kinase; ALFA/ 93.9 0.036 1.2E-06 50.5 3.8 24 213-236 9-32 (175)
287 1m7g_A Adenylylsulfate kinase; 93.9 0.082 2.8E-06 49.9 6.4 50 196-247 11-61 (211)
288 2p5t_B PEZT; postsegregational 93.9 0.042 1.4E-06 53.6 4.5 23 214-236 34-56 (253)
289 2vli_A Antibiotic resistance p 93.9 0.022 7.6E-07 52.3 2.2 23 213-235 6-28 (183)
290 3iqw_A Tail-anchored protein t 93.9 0.048 1.6E-06 55.6 4.9 38 212-249 16-53 (334)
291 1rz3_A Hypothetical protein rb 93.8 0.058 2E-06 50.5 5.1 34 213-246 23-56 (201)
292 4eaq_A DTMP kinase, thymidylat 93.8 0.044 1.5E-06 52.6 4.4 33 213-246 27-59 (229)
293 2xb4_A Adenylate kinase; ATP-b 93.8 0.037 1.3E-06 52.9 3.7 23 214-236 2-24 (223)
294 2pt5_A Shikimate kinase, SK; a 93.8 0.04 1.4E-06 49.7 3.7 23 214-236 2-24 (168)
295 3tlx_A Adenylate kinase 2; str 93.7 0.038 1.3E-06 53.6 3.7 23 214-236 31-53 (243)
296 2qor_A Guanylate kinase; phosp 93.7 0.033 1.1E-06 52.4 3.2 26 211-236 11-36 (204)
297 3hu3_A Transitional endoplasmi 93.7 0.042 1.4E-06 59.1 4.3 23 213-235 239-261 (489)
298 1ak2_A Adenylate kinase isoenz 93.7 0.039 1.3E-06 53.1 3.7 24 213-236 17-40 (233)
299 3tau_A Guanylate kinase, GMP k 93.6 0.043 1.5E-06 51.8 3.8 24 212-235 8-31 (208)
300 2woo_A ATPase GET3; tail-ancho 93.6 0.063 2.2E-06 54.7 5.3 37 212-248 19-55 (329)
301 1zd8_A GTP:AMP phosphotransfer 93.6 0.032 1.1E-06 53.4 2.9 25 212-236 7-31 (227)
302 2ce7_A Cell division protein F 93.6 0.035 1.2E-06 59.3 3.5 24 213-236 50-73 (476)
303 1ihu_A Arsenical pump-driving 93.6 0.06 2.1E-06 59.6 5.6 38 212-249 8-45 (589)
304 1ukz_A Uridylate kinase; trans 93.6 0.034 1.2E-06 52.1 3.1 22 214-235 17-38 (203)
305 3pxi_A Negative regulator of g 93.6 0.06 2.1E-06 61.6 5.6 39 198-236 185-225 (758)
306 3u4q_B ATP-dependent helicase/ 93.6 0.045 1.5E-06 65.8 4.7 75 558-632 585-692 (1166)
307 1ye8_A Protein THEP1, hypothet 93.6 0.045 1.5E-06 50.3 3.7 23 214-236 2-24 (178)
308 3be4_A Adenylate kinase; malar 93.6 0.042 1.4E-06 52.2 3.6 23 214-236 7-29 (217)
309 1e9r_A Conjugal transfer prote 93.5 0.064 2.2E-06 57.0 5.4 43 212-254 53-95 (437)
310 2bdt_A BH3686; alpha-beta prot 93.5 0.039 1.3E-06 51.0 3.2 22 213-234 3-24 (189)
311 1e4v_A Adenylate kinase; trans 93.5 0.042 1.4E-06 52.1 3.5 22 215-236 3-24 (214)
312 2ewv_A Twitching motility prot 93.4 0.06 2E-06 55.8 4.8 37 211-247 135-172 (372)
313 3v9p_A DTMP kinase, thymidylat 93.4 0.054 1.8E-06 51.9 4.2 35 212-246 25-63 (227)
314 2d7d_A Uvrabc system protein B 93.4 0.16 5.3E-06 57.0 8.5 65 196-263 12-80 (661)
315 1byi_A Dethiobiotin synthase; 93.4 0.077 2.6E-06 50.4 5.3 35 214-248 4-38 (224)
316 2www_A Methylmalonic aciduria 93.4 0.068 2.3E-06 54.9 5.2 36 213-248 75-110 (349)
317 1qvr_A CLPB protein; coiled co 93.4 0.093 3.2E-06 60.8 6.9 49 199-247 176-233 (854)
318 2bbw_A Adenylate kinase 4, AK4 93.3 0.053 1.8E-06 52.6 4.0 25 212-236 27-51 (246)
319 3io3_A DEHA2D07832P; chaperone 93.3 0.071 2.4E-06 54.6 5.2 38 212-249 18-57 (348)
320 2wsm_A Hydrogenase expression/ 93.3 0.079 2.7E-06 50.1 5.2 46 200-246 16-63 (221)
321 2eyu_A Twitching motility prot 93.3 0.071 2.4E-06 52.3 4.9 36 211-246 24-60 (261)
322 2oze_A ORF delta'; para, walke 93.3 0.14 4.7E-06 51.1 7.1 34 213-246 36-71 (298)
323 2qm8_A GTPase/ATPase; G protei 93.2 0.072 2.5E-06 54.4 5.0 37 212-248 55-91 (337)
324 1kgd_A CASK, peripheral plasma 93.2 0.059 2E-06 49.5 4.0 24 212-235 5-28 (180)
325 2v54_A DTMP kinase, thymidylat 93.2 0.041 1.4E-06 51.4 2.9 33 212-246 4-36 (204)
326 4tmk_A Protein (thymidylate ki 93.2 0.087 3E-06 49.9 5.2 44 213-256 4-49 (213)
327 3pxi_A Negative regulator of g 93.2 0.087 3E-06 60.2 6.1 33 214-246 523-555 (758)
328 3lv8_A DTMP kinase, thymidylat 93.1 0.16 5.3E-06 49.0 6.9 41 212-252 27-69 (236)
329 3kjh_A CO dehydrogenase/acetyl 93.1 0.049 1.7E-06 52.7 3.4 31 217-247 5-35 (254)
330 3cmw_A Protein RECA, recombina 93.1 0.093 3.2E-06 64.2 6.4 49 211-259 382-430 (1706)
331 3k1j_A LON protease, ATP-depen 93.1 0.079 2.7E-06 58.8 5.4 38 199-236 47-84 (604)
332 3tr0_A Guanylate kinase, GMP k 93.1 0.062 2.1E-06 50.2 4.0 24 212-235 7-30 (205)
333 2j41_A Guanylate kinase; GMP, 93.0 0.061 2.1E-06 50.3 3.8 24 212-235 6-29 (207)
334 2ph1_A Nucleotide-binding prot 93.0 0.08 2.7E-06 51.9 4.8 35 213-247 20-54 (262)
335 3m6a_A ATP-dependent protease 93.0 0.057 2E-06 59.1 4.1 25 212-236 108-132 (543)
336 1hyq_A MIND, cell division inh 93.0 0.093 3.2E-06 51.3 5.3 34 214-247 5-38 (263)
337 2woj_A ATPase GET3; tail-ancho 93.0 0.085 2.9E-06 54.2 5.1 38 212-249 18-57 (354)
338 3cf2_A TER ATPase, transitiona 92.9 0.033 1.1E-06 63.2 2.0 22 214-235 240-261 (806)
339 3q9l_A Septum site-determining 92.8 0.088 3E-06 51.2 4.8 34 214-247 5-38 (260)
340 1cp2_A CP2, nitrogenase iron p 92.8 0.09 3.1E-06 51.6 4.9 31 216-246 5-35 (269)
341 2p67_A LAO/AO transport system 92.8 0.091 3.1E-06 53.8 5.1 36 213-248 57-92 (341)
342 2afh_E Nitrogenase iron protei 92.8 0.095 3.3E-06 52.1 5.1 32 215-246 5-36 (289)
343 1r6b_X CLPA protein; AAA+, N-t 92.8 0.11 3.6E-06 59.5 6.1 41 198-238 191-233 (758)
344 3cpe_A Terminase, DNA packagin 92.8 0.29 9.9E-06 54.1 9.4 67 194-261 161-229 (592)
345 1tf7_A KAIC; homohexamer, hexa 92.8 0.092 3.2E-06 57.2 5.3 49 211-260 280-328 (525)
346 1g3q_A MIND ATPase, cell divis 92.8 0.094 3.2E-06 50.3 4.8 35 214-248 5-39 (237)
347 2dhr_A FTSH; AAA+ protein, hex 92.7 0.049 1.7E-06 58.6 3.0 23 214-236 66-88 (499)
348 3end_A Light-independent proto 92.7 0.096 3.3E-06 52.6 5.0 34 214-247 43-76 (307)
349 3cmw_A Protein RECA, recombina 92.7 0.09 3.1E-06 64.3 5.5 50 211-260 33-82 (1706)
350 1cke_A CK, MSSA, protein (cyti 92.7 0.075 2.6E-06 50.6 4.0 24 213-236 6-29 (227)
351 4gp7_A Metallophosphoesterase; 92.7 0.047 1.6E-06 49.7 2.4 20 212-231 9-28 (171)
352 1ex7_A Guanylate kinase; subst 92.6 0.075 2.6E-06 49.1 3.7 23 213-235 2-24 (186)
353 1jjv_A Dephospho-COA kinase; P 92.5 0.066 2.3E-06 50.2 3.2 21 214-234 4-24 (206)
354 4a74_A DNA repair and recombin 92.5 0.078 2.7E-06 50.5 3.8 27 211-237 24-50 (231)
355 3cwq_A Para family chromosome 92.4 0.12 4E-06 48.8 4.9 32 214-246 3-34 (209)
356 3b85_A Phosphate starvation-in 92.4 0.14 4.8E-06 48.3 5.4 38 197-235 8-45 (208)
357 3ld9_A DTMP kinase, thymidylat 92.4 0.13 4.6E-06 48.9 5.2 43 213-255 22-67 (223)
358 3hjn_A DTMP kinase, thymidylat 92.4 0.14 4.8E-06 47.8 5.3 34 214-247 2-35 (197)
359 3c8u_A Fructokinase; YP_612366 92.3 0.14 4.9E-06 48.1 5.4 28 213-240 23-50 (208)
360 3la6_A Tyrosine-protein kinase 92.3 0.19 6.5E-06 49.9 6.4 34 214-247 95-128 (286)
361 3a00_A Guanylate kinase, GMP k 92.2 0.072 2.4E-06 49.2 3.0 24 213-236 2-25 (186)
362 3igf_A ALL4481 protein; two-do 92.2 0.078 2.7E-06 54.8 3.6 36 213-248 3-38 (374)
363 3lda_A DNA repair protein RAD5 92.1 0.094 3.2E-06 54.8 4.2 39 211-249 177-221 (400)
364 3ea0_A ATPase, para family; al 92.1 0.12 4E-06 49.9 4.6 35 214-248 7-42 (245)
365 1svm_A Large T antigen; AAA+ f 92.0 0.1 3.5E-06 54.0 4.3 25 211-235 168-192 (377)
366 2hf9_A Probable hydrogenase ni 92.0 0.15 5.2E-06 48.3 5.3 46 199-245 23-70 (226)
367 1pzn_A RAD51, DNA repair and r 91.9 0.14 4.6E-06 52.6 5.0 26 211-236 130-155 (349)
368 3ake_A Cytidylate kinase; CMP 91.8 0.11 3.9E-06 48.5 4.0 24 213-236 3-26 (208)
369 3cmu_A Protein RECA, recombina 91.8 0.13 4.3E-06 63.9 5.3 46 211-256 1080-1125(2050)
370 3fwy_A Light-independent proto 91.8 0.16 5.5E-06 51.2 5.3 35 213-247 49-83 (314)
371 3r20_A Cytidylate kinase; stru 91.7 0.11 3.7E-06 49.9 3.7 25 212-236 9-33 (233)
372 1qvr_A CLPB protein; coiled co 91.7 0.11 3.9E-06 60.1 4.6 32 213-244 589-620 (854)
373 2i3b_A HCR-ntpase, human cance 91.6 0.14 4.9E-06 47.4 4.4 33 213-247 2-34 (189)
374 2if2_A Dephospho-COA kinase; a 91.6 0.099 3.4E-06 48.8 3.3 21 214-234 3-23 (204)
375 2qmh_A HPR kinase/phosphorylas 91.5 0.098 3.3E-06 48.6 3.1 23 213-235 35-57 (205)
376 1uj2_A Uridine-cytidine kinase 91.5 0.096 3.3E-06 51.0 3.2 23 214-236 24-46 (252)
377 3crm_A TRNA delta(2)-isopenten 91.5 0.091 3.1E-06 53.0 3.0 24 213-236 6-29 (323)
378 3cf2_A TER ATPase, transitiona 91.4 0.062 2.1E-06 61.0 2.0 30 214-246 513-542 (806)
379 1lvg_A Guanylate kinase, GMP k 91.4 0.12 4.1E-06 48.2 3.7 25 212-236 4-28 (198)
380 3ney_A 55 kDa erythrocyte memb 91.4 0.14 4.8E-06 47.7 4.0 24 212-235 19-42 (197)
381 1ltq_A Polynucleotide kinase; 91.3 0.1 3.6E-06 52.1 3.4 22 213-234 3-24 (301)
382 1wcv_1 SOJ, segregation protei 91.3 0.11 3.9E-06 50.5 3.6 34 214-247 9-42 (257)
383 2grj_A Dephospho-COA kinase; T 91.3 0.13 4.5E-06 47.8 3.8 22 214-235 14-35 (192)
384 3fkq_A NTRC-like two-domain pr 91.2 0.14 4.9E-06 53.0 4.4 35 214-248 146-180 (373)
385 1r6b_X CLPA protein; AAA+, N-t 91.2 0.18 6.3E-06 57.5 5.6 23 214-236 490-512 (758)
386 3k9g_A PF-32 protein; ssgcid, 91.2 0.12 4E-06 50.7 3.5 33 214-247 30-62 (267)
387 2qt1_A Nicotinamide riboside k 91.1 0.11 3.8E-06 48.7 3.1 22 213-234 22-43 (207)
388 3pg5_A Uncharacterized protein 91.1 0.1 3.5E-06 53.8 3.1 34 214-247 4-37 (361)
389 1f2t_A RAD50 ABC-ATPase; DNA d 90.9 0.15 5.1E-06 45.2 3.6 26 212-237 23-48 (149)
390 2xj4_A MIPZ; replication, cell 90.9 0.16 5.6E-06 50.4 4.2 33 214-246 7-39 (286)
391 3ice_A Transcription terminati 90.7 0.52 1.8E-05 48.4 7.7 63 198-260 158-226 (422)
392 3nwj_A ATSK2; P loop, shikimat 90.6 0.17 5.7E-06 49.2 3.9 25 212-236 48-72 (250)
393 3f9v_A Minichromosome maintena 90.6 0.11 3.7E-06 57.4 2.9 21 214-234 329-349 (595)
394 3lnc_A Guanylate kinase, GMP k 90.6 0.068 2.3E-06 51.2 1.1 23 211-233 26-48 (231)
395 2v9p_A Replication protein E1; 90.5 0.25 8.4E-06 49.5 5.2 34 211-247 125-158 (305)
396 1sq5_A Pantothenate kinase; P- 90.5 0.28 9.7E-06 49.2 5.7 34 213-246 81-116 (308)
397 1z6g_A Guanylate kinase; struc 90.5 0.15 5.2E-06 48.4 3.4 28 209-236 20-47 (218)
398 1uf9_A TT1252 protein; P-loop, 90.5 0.15 5E-06 47.4 3.3 22 213-234 9-30 (203)
399 3asz_A Uridine kinase; cytidin 90.5 0.16 5.6E-06 47.6 3.7 23 213-235 7-29 (211)
400 3tqc_A Pantothenate kinase; bi 90.4 0.26 9E-06 49.7 5.3 33 214-247 94-129 (321)
401 3tqf_A HPR(Ser) kinase; transf 90.2 0.23 7.8E-06 45.0 4.1 21 214-234 18-38 (181)
402 2ga8_A Hypothetical 39.9 kDa p 90.2 0.23 7.8E-06 50.6 4.6 23 214-236 26-48 (359)
403 1tf7_A KAIC; homohexamer, hexa 90.2 0.34 1.2E-05 52.7 6.3 40 211-250 38-78 (525)
404 1vht_A Dephospho-COA kinase; s 90.1 0.17 5.7E-06 47.9 3.4 21 214-234 6-26 (218)
405 4akg_A Glutathione S-transfera 90.0 0.22 7.5E-06 63.8 5.2 33 203-235 1258-1290(2695)
406 2pt7_A CAG-ALFA; ATPase, prote 90.0 0.13 4.6E-06 52.2 2.7 34 202-235 161-194 (330)
407 3ez2_A Plasmid partition prote 89.9 0.2 6.8E-06 52.4 4.1 52 197-248 84-151 (398)
408 3d3q_A TRNA delta(2)-isopenten 89.9 0.16 5.6E-06 51.5 3.2 24 213-236 8-31 (340)
409 2gza_A Type IV secretion syste 89.9 0.18 6.2E-06 52.0 3.6 32 204-235 167-198 (361)
410 3gmt_A Adenylate kinase; ssgci 89.8 0.17 5.7E-06 48.4 3.1 22 215-236 11-32 (230)
411 4hlc_A DTMP kinase, thymidylat 89.7 0.47 1.6E-05 44.5 6.1 40 213-253 3-43 (205)
412 2f6r_A COA synthase, bifunctio 89.6 0.17 5.9E-06 50.1 3.1 20 214-233 77-96 (281)
413 3kta_A Chromosome segregation 89.6 0.2 7E-06 45.7 3.4 24 212-235 26-49 (182)
414 4e22_A Cytidylate kinase; P-lo 89.5 0.2 6.9E-06 48.7 3.6 25 212-236 27-51 (252)
415 3exa_A TRNA delta(2)-isopenten 89.5 0.15 5.2E-06 51.0 2.6 25 212-236 3-27 (322)
416 3zvl_A Bifunctional polynucleo 89.5 0.13 4.6E-06 54.0 2.4 24 212-235 258-281 (416)
417 1ypw_A Transitional endoplasmi 89.4 0.14 4.8E-06 58.7 2.7 23 213-235 239-261 (806)
418 1x6v_B Bifunctional 3'-phospho 89.4 0.31 1.1E-05 53.7 5.3 57 190-246 28-86 (630)
419 1znw_A Guanylate kinase, GMP k 89.4 0.22 7.6E-06 46.7 3.6 25 211-235 19-43 (207)
420 2jeo_A Uridine-cytidine kinase 89.4 0.22 7.4E-06 48.2 3.6 24 213-236 26-49 (245)
421 3tmk_A Thymidylate kinase; pho 89.4 0.22 7.7E-06 47.1 3.6 26 212-237 5-30 (216)
422 1nij_A Hypothetical protein YJ 89.3 0.17 5.8E-06 51.2 2.9 35 213-249 5-39 (318)
423 3foz_A TRNA delta(2)-isopenten 89.3 0.17 6E-06 50.4 2.8 24 213-236 11-34 (316)
424 1q3t_A Cytidylate kinase; nucl 89.1 0.28 9.6E-06 47.0 4.2 24 213-236 17-40 (236)
425 1ypw_A Transitional endoplasmi 89.0 0.13 4.3E-06 59.1 1.9 24 213-236 512-535 (806)
426 3qks_A DNA double-strand break 89.0 0.24 8.4E-06 46.3 3.6 26 212-237 23-48 (203)
427 1s96_A Guanylate kinase, GMP k 89.0 0.25 8.5E-06 47.0 3.6 25 211-235 15-39 (219)
428 3a8t_A Adenylate isopentenyltr 89.0 0.14 4.9E-06 51.7 2.0 24 213-236 41-64 (339)
429 3eph_A TRNA isopentenyltransfe 88.8 0.23 7.9E-06 51.5 3.5 25 212-236 2-26 (409)
430 1odf_A YGR205W, hypothetical 3 88.7 0.27 9.1E-06 49.0 3.7 26 213-238 32-57 (290)
431 1htw_A HI0065; nucleotide-bind 88.6 0.2 7E-06 44.8 2.6 26 211-236 32-57 (158)
432 2gks_A Bifunctional SAT/APS ki 88.6 0.56 1.9E-05 51.1 6.5 42 214-260 374-415 (546)
433 1ihu_A Arsenical pump-driving 88.4 0.38 1.3E-05 53.1 5.2 37 212-248 327-363 (589)
434 1tq4_A IIGP1, interferon-induc 88.4 0.37 1.3E-05 50.4 4.7 35 200-234 57-91 (413)
435 1a7j_A Phosphoribulokinase; tr 88.3 0.28 9.5E-06 48.8 3.6 34 213-246 6-39 (290)
436 3ez9_A Para; DNA binding, wing 88.2 0.19 6.3E-06 52.7 2.3 51 197-247 87-153 (403)
437 2h92_A Cytidylate kinase; ross 88.0 0.25 8.7E-06 46.6 3.0 23 213-235 4-26 (219)
438 2axn_A 6-phosphofructo-2-kinas 88.0 0.44 1.5E-05 51.6 5.2 31 213-243 36-66 (520)
439 3aez_A Pantothenate kinase; tr 87.9 0.31 1E-05 49.1 3.6 24 213-236 91-114 (312)
440 3jux_A Protein translocase sub 87.9 0.56 1.9E-05 52.2 5.9 62 197-261 76-137 (822)
441 2ocp_A DGK, deoxyguanosine kin 87.9 0.25 8.5E-06 47.6 2.9 23 214-236 4-26 (241)
442 3l0o_A Transcription terminati 87.9 0.53 1.8E-05 48.4 5.3 38 202-239 163-202 (427)
443 2f1r_A Molybdopterin-guanine d 87.8 0.31 1.1E-05 44.3 3.3 28 213-240 3-30 (171)
444 1z6t_A APAF-1, apoptotic prote 87.8 0.42 1.4E-05 52.7 5.0 37 199-235 130-170 (591)
445 2obl_A ESCN; ATPase, hydrolase 87.1 0.55 1.9E-05 48.0 5.0 46 202-248 59-107 (347)
446 1sky_E F1-ATPase, F1-ATP synth 86.3 0.71 2.4E-05 48.8 5.5 35 204-238 141-177 (473)
447 3of5_A Dethiobiotin synthetase 85.8 0.75 2.6E-05 43.9 4.9 35 214-248 6-41 (228)
448 1m8p_A Sulfate adenylyltransfe 85.6 0.62 2.1E-05 51.0 4.8 34 214-247 398-432 (573)
449 3fdi_A Uncharacterized protein 85.4 0.51 1.7E-05 44.1 3.4 25 212-236 6-30 (201)
450 3vkg_A Dynein heavy chain, cyt 85.1 0.46 1.6E-05 61.6 3.8 57 202-260 1294-1351(3245)
451 1p5z_B DCK, deoxycytidine kina 85.0 0.18 6.3E-06 49.3 0.2 25 212-236 24-48 (263)
452 2dyk_A GTP-binding protein; GT 84.8 0.51 1.7E-05 41.5 3.0 20 214-233 3-22 (161)
453 2f9l_A RAB11B, member RAS onco 84.7 0.5 1.7E-05 43.6 3.1 21 214-234 7-27 (199)
454 1nrj_B SR-beta, signal recogni 84.4 0.54 1.9E-05 44.0 3.2 24 212-235 12-35 (218)
455 1oix_A RAS-related protein RAB 84.2 0.52 1.8E-05 43.3 2.9 21 214-234 31-51 (191)
456 1bif_A 6-phosphofructo-2-kinas 84.2 0.59 2E-05 49.9 3.7 28 213-240 40-67 (469)
457 2wji_A Ferrous iron transport 84.0 0.58 2E-05 41.7 3.1 20 214-233 5-24 (165)
458 3qkt_A DNA double-strand break 83.9 0.62 2.1E-05 47.4 3.6 26 212-237 23-48 (339)
459 2pcj_A ABC transporter, lipopr 83.6 0.64 2.2E-05 44.2 3.3 35 211-246 29-64 (224)
460 3qf7_A RAD50; ABC-ATPase, ATPa 83.6 0.68 2.3E-05 47.6 3.8 26 212-237 23-48 (365)
461 1z2a_A RAS-related protein RAB 83.6 0.62 2.1E-05 41.2 3.1 19 215-233 8-26 (168)
462 2rcn_A Probable GTPase ENGC; Y 83.5 0.93 3.2E-05 46.3 4.6 29 204-233 208-236 (358)
463 1kao_A RAP2A; GTP-binding prot 83.4 0.63 2.1E-05 41.0 3.0 20 215-234 6-25 (167)
464 2onk_A Molybdate/tungstate ABC 83.4 0.68 2.3E-05 44.6 3.4 33 213-246 25-58 (240)
465 1sgw_A Putative ABC transporte 83.2 0.66 2.3E-05 43.8 3.2 35 211-246 34-69 (214)
466 2cbz_A Multidrug resistance-as 83.1 0.63 2.2E-05 44.7 3.1 23 211-233 30-52 (237)
467 2ce2_X GTPase HRAS; signaling 83.1 0.64 2.2E-05 40.8 3.0 20 215-234 6-25 (166)
468 1dek_A Deoxynucleoside monopho 83.1 1.7 5.9E-05 41.7 6.2 43 214-261 3-45 (241)
469 2ged_A SR-beta, signal recogni 83.0 0.64 2.2E-05 42.4 3.0 22 213-234 49-70 (193)
470 3tif_A Uncharacterized ABC tra 82.8 0.74 2.5E-05 44.1 3.4 35 211-246 30-65 (235)
471 1g16_A RAS-related protein SEC 82.5 0.69 2.4E-05 41.0 3.0 19 215-233 6-24 (170)
472 1wms_A RAB-9, RAB9, RAS-relate 82.5 0.7 2.4E-05 41.3 3.0 19 215-233 10-28 (177)
473 3hdt_A Putative kinase; struct 82.5 0.84 2.9E-05 43.3 3.6 24 213-236 15-38 (223)
474 1ek0_A Protein (GTP-binding pr 82.3 0.74 2.5E-05 40.7 3.1 19 215-233 6-24 (170)
475 1ky3_A GTP-binding protein YPT 82.1 0.74 2.5E-05 41.3 3.0 20 214-233 10-29 (182)
476 2d2e_A SUFC protein; ABC-ATPas 82.0 0.86 3E-05 44.1 3.6 24 211-234 28-51 (250)
477 1u8z_A RAS-related protein RAL 82.0 0.77 2.6E-05 40.4 3.1 19 215-233 7-25 (168)
478 2ck3_D ATP synthase subunit be 81.9 1.2 4.1E-05 47.0 4.9 60 203-262 142-206 (482)
479 2erx_A GTP-binding protein DI- 81.7 0.79 2.7E-05 40.6 3.0 19 215-233 6-24 (172)
480 3gfo_A Cobalt import ATP-bindi 81.7 0.82 2.8E-05 45.0 3.4 36 211-247 33-69 (275)
481 2yv5_A YJEQ protein; hydrolase 81.7 1.1 3.8E-05 44.7 4.4 31 202-233 156-186 (302)
482 3sop_A Neuronal-specific septi 81.6 0.74 2.5E-05 45.2 3.0 23 214-236 4-26 (270)
483 1b0u_A Histidine permease; ABC 81.6 0.85 2.9E-05 44.5 3.4 35 211-246 31-66 (262)
484 1g6h_A High-affinity branched- 81.6 0.86 2.9E-05 44.3 3.4 35 211-246 32-67 (257)
485 1z0j_A RAB-22, RAS-related pro 81.5 0.81 2.8E-05 40.5 3.0 19 215-233 9-27 (170)
486 1ji0_A ABC transporter; ATP bi 81.4 0.89 3E-05 43.7 3.4 35 211-246 31-66 (240)
487 2nzj_A GTP-binding protein REM 81.4 0.82 2.8E-05 40.7 3.0 19 215-233 7-25 (175)
488 2pze_A Cystic fibrosis transme 81.4 0.8 2.7E-05 43.7 3.1 23 211-233 33-55 (229)
489 2ff7_A Alpha-hemolysin translo 81.4 0.89 3E-05 43.9 3.4 35 211-246 34-69 (247)
490 3q85_A GTP-binding protein REM 81.4 0.83 2.8E-05 40.5 3.1 19 215-233 5-23 (169)
491 2zej_A Dardarin, leucine-rich 81.3 0.69 2.4E-05 42.0 2.5 20 214-233 4-23 (184)
492 1u0l_A Probable GTPase ENGC; p 81.3 1.2 4.1E-05 44.4 4.5 29 204-233 162-190 (301)
493 4akg_A Glutathione S-transfera 81.3 0.83 2.8E-05 58.7 4.0 41 196-236 629-669 (2695)
494 2zu0_C Probable ATP-dependent 81.2 0.94 3.2E-05 44.3 3.6 24 211-234 45-68 (267)
495 2olj_A Amino acid ABC transpor 81.2 0.9 3.1E-05 44.3 3.4 35 211-246 49-84 (263)
496 1svi_A GTP-binding protein YSX 81.2 0.78 2.7E-05 41.9 2.9 23 212-234 23-45 (195)
497 1z08_A RAS-related protein RAB 81.1 0.85 2.9E-05 40.4 3.0 19 215-233 9-27 (170)
498 1r2q_A RAS-related protein RAB 81.1 0.86 2.9E-05 40.3 3.1 20 215-234 9-28 (170)
499 2qi9_C Vitamin B12 import ATP- 81.1 0.92 3.1E-05 43.9 3.4 35 211-246 25-59 (249)
500 2ghi_A Transport protein; mult 81.0 0.93 3.2E-05 44.2 3.4 35 211-246 45-79 (260)
No 1
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=100.00 E-value=4.9e-112 Score=963.16 Aligned_cols=630 Identities=46% Similarity=0.740 Sum_probs=553.6
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChHHHhHcCCeeecceEEeeeeccCCcEEEEEEecC---CCCCCCCCc
Q 006386 13 VSLQEFVSVMAPLIDLEKEAEISASITSGASRNLDTAQKKGSTILNLKCVDAQTGLMGKTLLEFQSTK---GDVLPAHKF 89 (647)
Q Consensus 13 ~~~~~y~~~~~~ll~~E~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 89 (647)
.|+++|+++|.+||.+|+++|+++..+.+++++.+++++.|.||.+|.+.+..+|++|+++++|.++. ...+|++.|
T Consensus 2 ~~~~~~~~~~~~Ll~~E~~~e~~~~~~~~~~~~~~~~~~~G~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~ 81 (646)
T 4b3f_X 2 AAVESFVTKQLDLLELERDAEVEERRSWQENISLKELQSRGVCLLKLQVSSQRTGLYGRLLVTFEPRRYGSAAALPSNSF 81 (646)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHGGGTSEEEEEEEEEEEECSSSCEEEEEEESCC---CCCCCCCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHhCCceecceEEEEEEecCCCeEEEEEEecCCCCCCCCccCCC
Confidence 36899999999999999999999999999999999999999999999999999999999999998765 356789999
Q ss_pred CCCCEEEEeeCCCCCCCCceEEEEEEEEeCCEEEEEecCCCCC----CCCCCeEEEEeccchhHHHHHHHHHHHHhcccC
Q 006386 90 GTHDVVVLKPNKADLGSPALGQGVVYRLKDSSITVAFDDIPEE----GLNSPLRLEKLANEVTYRRMKDALIQLSKGVQN 165 (647)
Q Consensus 90 ~~gD~v~~~~~~~~~~~~~~~~g~v~~~~~~~i~v~~~~~~~~----~~~~~~~~~~~~~~~t~~r~~~al~~~~~~~~~ 165 (647)
++||+|+|++..+. ....+.|+|++++.+.|+|.++..++. .....++++++.|++||+||+.||..+... ..
T Consensus 82 ~~Gd~v~~~~~~~~--~~~~~~g~v~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~al~~l~~~-~~ 158 (646)
T 4b3f_X 82 TSGDIVGLYDAANE--GSQLATGILTRVTQKSVTVAFDESHDFQLSLDRENSYRLLKLANDVTYRRLKKALIALKKY-HS 158 (646)
T ss_dssp CTTCEEEEEETTTT--SCCCEEEEEEEEETTEEEEECC-------CCCSSCCEEEEEECCHHHHHHHHHHHHHHHTC-CS
T ss_pred CCCCEEEEEecCCC--CCceEEEEEEEEeCCEEEEEECCccccccccCCCCcEEEEEeccchHHHHHHHHHHHhhhc-cc
Confidence 99999999986432 345789999999999999999876554 234579999999999999999999999873 34
Q ss_pred CCCcCccccccCCCCCCcccccccCCCCCCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEE
Q 006386 166 GPAAGLIPVLFGEQKPTVLKKDIAFKPFNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILA 245 (647)
Q Consensus 166 ~~~~~l~~~l~~~~~p~~~~~~~~~~~~~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv 245 (647)
.+...++++|+|..+|.+........+++.+||++|++||..++.+++++||+||||||||+|++++|.+++++|.+||+
T Consensus 159 ~~~~~l~~~l~~~~~p~~~~~~~~~~~~~~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv 238 (646)
T 4b3f_X 159 GPASSLIEVLFGRSAPSPASEIHPLTFFNTCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLC 238 (646)
T ss_dssp STTHHHHHHHTTSSCCCCCCCCCCCCCSSTTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CchHHHHHHHcCCCCCCCccccCcccccCCCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 55667889999988887766555567788999999999999999877899999999999999999999999999999999
Q ss_pred eccchHHHHHHHHHhcccCceEEEeCCCCCCChhHHhhhHHHHHhcCCCchhHHHHHHHHHHHHHHHhccCCHHHHHHHH
Q 006386 246 CAASNIAVDNIVERLVPHRVRLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQ 325 (647)
Q Consensus 246 ~a~tn~Avd~l~~rl~~~~~~~vr~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 325 (647)
|||||.|||+|++||...+.+++|+|+++++.+.+..++++..+.+.+......++++++........+..+...+..+.
T Consensus 239 ~a~TN~AvD~i~erL~~~~~~ilRlG~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (646)
T 4b3f_X 239 CAPSNIAVDNLVERLALCKQRILRLGHPARLLESIQQHSLDAVLARSDSAQIVADIRKDIDQVFVKNKKTQDKREKSNFR 318 (646)
T ss_dssp EESSHHHHHHHHHHHHHTTCCEEECSCCSSCCHHHHTTBHHHHHTTTTCSSTHHHHHHHHTTSSTTTTC------CCSSH
T ss_pred EcCchHHHHHHHHHHHhcCCceEEecchhhhhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988888888888887765544444433333444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCceeeecccccccc----ccCCCCCCEEEEecCCCcchHHHHHHHHhcCeeeecCC
Q 006386 326 KELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVSR----KLDNTSFDLVIIDEAAQALEIACWIALLKGSRCILAGD 401 (647)
Q Consensus 326 ~~l~~l~~~~~~~~~~~~~~~l~~~~vi~~T~~~~~~~----~l~~~~fd~vIIDEAsq~~e~~~l~~l~~~~~~vlvGD 401 (647)
..++.+.+.++..+.....+.+..++++++|+.+++.. .+....||+||||||+|++++++|+||.+++++|||||
T Consensus 319 ~~~~~l~~~l~~~~~~~~~~~l~~~~vv~~t~~~a~~~~~~~~~~~~~Fd~vIIDEAsQ~~e~~~lipL~~~~~~ILVGD 398 (646)
T 4b3f_X 319 NEIKLLRKELKEREEAAMLESLTSANVVLATNTGASADGPLKLLPESYFDVVVIDECAQALEASCWIPLLKARKCILAGD 398 (646)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSEEEEETTTTCSSSGGGGSCTTCCSEEEETTGGGSCHHHHTTTGGGSSEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcceeeeehhhhhhhhHHHhhhhccCCEEEEcCccccchHHHHhhccccceEEEcCC
Confidence 66677777777777778888999999999999988753 35677999999999999999999999999999999999
Q ss_pred CCCCCceeccHHHHhcCCCCCHHHHHHHHcCCcccchhhHhhcChhHHHHhhHhhhcCCCCCCChhhhhcccccccCCcC
Q 006386 402 HLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSVAAHMLFDLEGVKR 481 (647)
Q Consensus 402 ~~QL~p~v~s~~~~~~g~~~Slf~rl~~~~~~~~~~~L~~qyRm~~~I~~~~s~~fY~~~L~~~~~~~~~~~~~~~~~~~ 481 (647)
|+||||++.+..+...|++.|+|+||.+.++.....+|++||||||.|++|+|+.||+|+|.+++++..+.+.++|+...
T Consensus 399 ~~QLpP~v~~~~a~~~gl~~SlferL~~~~~~~~v~~L~~qYRmhp~I~~f~n~~fY~g~L~~~~~~~~~~~~~lp~~~~ 478 (646)
T 4b3f_X 399 HKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVVRTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVARHLLRDLPGVAA 478 (646)
T ss_dssp TTSCCCCCSCHHHHHTTTTCCHHHHHHHHHGGGTEEECCEESSSCHHHHHHHHHHHSTTCCEECTTTTTCCGGGSTTCCC
T ss_pred ccccCceecchhhhhccccchHHHHHHHhcCCceeeecccccCCcHHHHhhhHHhhcCCccccCcchhhhhhcccccccc
Confidence 99999999999999999999999999998877767799999999999999999999999999999988888888887777
Q ss_pred CCCCCCcEEEEEecCCCcccc-ccCCCCccCHHHHHHHHHHHHHHHHcCCCCCeEEEEcccHHHHHHHHHHHhcCCCCCC
Q 006386 482 TSSTEPTLLLIDIAGCDMEEK-KDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSKDDKLKN 560 (647)
Q Consensus 482 ~~~~~~~~~f~d~~~~~~~~~-~~~~~s~~N~~Ea~~v~~~v~~l~~~g~~~~~I~IItpy~~Q~~~l~~l~~~~~~~~~ 560 (647)
......|++|+|+.|+...+. ...+.|+.|..||++|..+++.|++.|+++++|||||||++|+.+|++.+.. ..++
T Consensus 479 ~~~~~~p~~f~d~~g~~~~~~~~~~~~s~~N~~EA~~V~~~v~~L~~~gv~~~dIgVItpYraQ~~~l~~~l~~--~~~~ 556 (646)
T 4b3f_X 479 TEETGVPLLLVDTAGCGLFELEEEDEQSKGNPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQVDLLRQSLVH--RHPE 556 (646)
T ss_dssp CTTTTCSEEEEECTTSSCCCCC-----CCCCHHHHHHHHHHHHHHHHHTCCGGGEEEEESCHHHHHHHHHHHTT--TCTT
T ss_pred ccccCCceEEEecCCCccccccccCCccccCHHHHHHHHHHHHHHHhcCCCcCcEEEECCCHHHHHHHHHHHHH--hCCC
Confidence 777788999999998754332 2335789999999999999999999999999999999999999999976643 3468
Q ss_pred eEEccCCCCCCccccEEEEEEeecCCCCccccCCCCCceeeeecccccceEEEecCCccccchHHHHHHHHHHHcCcccc
Q 006386 561 MEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEYLS 640 (647)
Q Consensus 561 i~v~Tvd~fQG~E~diVIis~vrs~~~~~~gfl~d~rrlnVAlTRAk~~l~ivG~~~~l~~~~~~~~l~~~~~~~~~~~~ 640 (647)
|+|+|||+|||+|+|+||+|+||+|..+.+||+.|+||||||+||||++||||||..+|+++++|++|++|++++|+|.+
T Consensus 557 i~v~TVd~fQG~E~dvII~S~vrsn~~~~iGFl~~~rRlNVAlTRAk~~liivGn~~~l~~~~~~~~li~~~~~~g~~~~ 636 (646)
T 4b3f_X 557 LEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRT 636 (646)
T ss_dssp CEEEEGGGGTTCCEEEEEEECCCCCTTCCCCSTTCHHHHHHHHHTEEEEEEEEECHHHHTTSHHHHHHHHHHHHSSEEEE
T ss_pred CEECChhhcccccCCEEEEEeccCCCCCCccccCCcCcEEeEhhhhhCeEEEEEchHHhcCCHHHHHHHHHHHHCCCEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCC
Q 006386 641 GSEYLNE 647 (647)
Q Consensus 641 ~~~~~~~ 647 (647)
++||++|
T Consensus 637 ~~e~ldd 643 (646)
T 4b3f_X 637 AFEYLDD 643 (646)
T ss_dssp GGGTCSS
T ss_pred HHHhhhc
Confidence 9999987
No 2
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=100.00 E-value=6.8e-83 Score=719.53 Aligned_cols=593 Identities=28% Similarity=0.406 Sum_probs=443.1
Q ss_pred CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChHHHhHcCCeeecceEEeeeeccCCcEEEEEEecCCCCCCCC
Q 006386 8 EKQSAVSLQEFVSVMAPLIDLEKEAEISASITSGASRNLDTAQKKGSTILNLKCVDAQTGLMGKTLLEFQSTKGDVLPAH 87 (647)
Q Consensus 8 ~~~~~~~~~~y~~~~~~ll~~E~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (647)
.+.++.|+.+|+++|.+||.+|++++..... ..+..++.+ .+..++.|+.++.|..+. ..+++
T Consensus 2 ~~~~~~~~~~y~~~~~~ll~~E~~~~~~~~~--------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~ 64 (624)
T 2gk6_A 2 LGSRYEDAYQYQNIFGPLVKLEADYDKKLKE--------------SQTQDNITV-RWDLGLNKKRIAYFTLPK--TDSDM 64 (624)
T ss_dssp -CCCCSSHHHHHHHHHHHHHHHHHHHHHHHH--------------HTCEEEECE-EEEECTTSCEEEEEECC--------
T ss_pred cCCccCCHHHHHHHHHHHHHHHHHHHHHHHh--------------hhhccCceE-EeeecCCCceEEEEEecc--cccCC
Confidence 4678999999999999999999987754321 113445555 456788999999998765 34567
Q ss_pred CcCCCCEEEEeeCCCCCCCCceEEEEEEEEeC---CEEEEEecCCCC--CCCCCCeEEEEeccchhHHHHHHHHHHHHhc
Q 006386 88 KFGTHDVVVLKPNKADLGSPALGQGVVYRLKD---SSITVAFDDIPE--EGLNSPLRLEKLANEVTYRRMKDALIQLSKG 162 (647)
Q Consensus 88 ~~~~gD~v~~~~~~~~~~~~~~~~g~v~~~~~---~~i~v~~~~~~~--~~~~~~~~~~~~~~~~t~~r~~~al~~~~~~ 162 (647)
+|..||+|+|+...+. .......|+|+++.+ ..|+|.++.... ......+.++++++++||+||..||..+...
T Consensus 65 ~~~~Gd~v~l~~~~~~-~~~~~~~g~v~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~~~ 143 (624)
T 2gk6_A 65 RLMQGDEICLRYKGDL-APLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVD 143 (624)
T ss_dssp -CCTTCEEEEEECSSS-SCCCEEEEEEEECSCSSCSEEEEEESCCTTCCCSCCSSEEEEECCCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCEEEEEECCCC-CCCcEEEEEEEEecCCCCCEEEEEEccCCCCccccccceEEEEEeCCchHHHHHHHHHHHHhc
Confidence 8999999999965332 234457899999965 689999963321 1233468999999999999999999998763
Q ss_pred ccCCCCcCccccccCCCCCCcccc-c--ccC-CCCCCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH
Q 006386 163 VQNGPAAGLIPVLFGEQKPTVLKK-D--IAF-KPFNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK 238 (647)
Q Consensus 163 ~~~~~~~~l~~~l~~~~~p~~~~~-~--~~~-~~~~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (647)
. ......+.+.+++...|..... . ..+ ......||++|++||..++. .++++|+||||||||+|+++++.+++.
T Consensus 144 ~-~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ln~~Q~~av~~~l~-~~~~li~GppGTGKT~~~~~~i~~l~~ 221 (624)
T 2gk6_A 144 E-TSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQ-RPLSLIQGPPGTGKTVTSATIVYHLAR 221 (624)
T ss_dssp T-TSBCSHHHHHHTTCCCCCCCCCCCCCSCCSCTTSCCCCHHHHHHHHHHHT-CSEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred c-ccchHHHHHHhcCCCCccccccccCcccccccccCCCCHHHHHHHHHHhc-CCCeEEECCCCCCHHHHHHHHHHHHHH
Confidence 1 1112335566777544432111 0 011 12346799999999999996 789999999999999999999999987
Q ss_pred -CCCeEEEeccchHHHHHHHHHhcccCceEEEeCCCCC--CChhHHhhhHHHHHhcCCCchhHHHHHHHHHHHHHHHhcc
Q 006386 239 -RGSKILACAASNIAVDNIVERLVPHRVRLVRLGHPAR--LLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKT 315 (647)
Q Consensus 239 -~~~~ILv~a~tn~Avd~l~~rl~~~~~~~vr~g~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 315 (647)
.+.+||+|||||.|+|++.+++.+.+.+++|+|++.+ ....+...++...+...+..... +.+ .+.
T Consensus 222 ~~~~~ilv~a~tn~A~~~l~~~l~~~~~~~~R~~~~~r~~~~~~~~~~tl~~~~~~~~~~~~l-------~~l----~~~ 290 (624)
T 2gk6_A 222 QGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPEL-------QKL----QQL 290 (624)
T ss_dssp SSSCCEEEEESSHHHHHHHHHHHHTTTCCEEECCCTGGGSCCCTTTTTBHHHHHTSCSSCHHH-------HHH----HTT
T ss_pred cCCCeEEEEeCcHHHHHHHHHHHHhcCCeEEeeccccchhhccchhhhhHHHHHHhccchHHH-------HHH----HHH
Confidence 7899999999999999999999999999999998754 22222233444444333222111 111 111
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceeeeccccccccccCCCCCCEEEEecCCCcchHHHHHHHHh-cC
Q 006386 316 KDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIACWIALLK-GS 394 (647)
Q Consensus 316 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~vi~~T~~~~~~~~l~~~~fd~vIIDEAsq~~e~~~l~~l~~-~~ 394 (647)
++... .+.. ...+.++.........+++.++||++||.++++..+....||+||||||+|++++++++++.. ++
T Consensus 291 ~~~~~--~~~~---~~~~~~~~~~~~~~~~~l~~~~vI~~T~~~~~~~~l~~~~fd~viIDEAsQ~~e~~~li~l~~~~~ 365 (624)
T 2gk6_A 291 KDETG--ELSS---ADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAK 365 (624)
T ss_dssp CC------CCH---HHHHHHHHHHHHHHHHHHHTCSEEEEETGGGGCGGGTTCCCSEEEETTGGGSCHHHHHHHHTTTBS
T ss_pred HHhhc--ccCH---HHHHHHHHHHHHHHHHHHhcCCEEEEcChhhcchhhhcCCCCEEEEecccccCcHHHHHHHHhcCC
Confidence 10000 0000 000112222233456789999999999999988778888999999999999999999999875 58
Q ss_pred eeeecCCCCCCCceeccHHHHhcCCCCCHHHHHHHHcCCcccchhhHhhcChhHHHHhhHhhhcCCCCCCChhhhhcccc
Q 006386 395 RCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSVAAHMLF 474 (647)
Q Consensus 395 ~~vlvGD~~QL~p~v~s~~~~~~g~~~Slf~rl~~~~~~~~~~~L~~qyRm~~~I~~~~s~~fY~~~L~~~~~~~~~~~~ 474 (647)
++|+||||+||||++.+..+...|++.|+|+||..... ..++|++||||||+|++|+|..||+|+|.+++....+...
T Consensus 366 ~~ilvGD~~QL~p~v~~~~~~~~gl~~Slferl~~~~~--~~~~L~~qYR~~~~I~~~~n~~fY~~~L~~~~~~~~r~~~ 443 (624)
T 2gk6_A 366 QLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGI--RPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKK 443 (624)
T ss_dssp EEEEEECTTSCCCCCSCHHHHHHTTTSCHHHHHHHTTC--CCEECCEECSSCHHHHHHHHHHHSTTCCEESSCTGGGCCT
T ss_pred eEEEecChhccCCeeecHHHHHcCCchhHHHHHHhcCC--CcEEehhhhCcChhHHhhhHHhhcCcccccCCchhhhccc
Confidence 99999999999999999988888999999999987432 2578999999999999999999999999877655444322
Q ss_pred cccCCcCCCCCCCcEEEEEecCCCccccccCCCCccCHHHHHHHHHHHHHHHHcCCCCCeEEEEcccHHHHHHHHHHHhc
Q 006386 475 DLEGVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSK 554 (647)
Q Consensus 475 ~~~~~~~~~~~~~~~~f~d~~~~~~~~~~~~~~s~~N~~Ea~~v~~~v~~l~~~g~~~~~I~IItpy~~Q~~~l~~l~~~ 554 (647)
.... .......|++|+++.|.+. ....+.|+.|..||+.|.+++..|+..|+++++|||||||++|+..|++.+..
T Consensus 444 ~~~~--~~~~~~~p~~~~~~~g~~~--~~~~~~s~~N~~Ea~~v~~~v~~l~~~g~~~~dIgVItpy~~Q~~~i~~~l~~ 519 (624)
T 2gk6_A 444 GFDF--QWPQPDKPMFFYVTQGQEE--IASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQF 519 (624)
T ss_dssp TCCC--CCSSTTCCEEEEECCCCEE--CCTTSSCCEEHHHHHHHHHHHHHHHTTTCCGGGEEEECSCHHHHHHHHHHHHH
T ss_pred ccCC--CCCCCCCCEEEEEcCCcce--ecCCCCCccCHHHHHHHHHHHHHHHHcCCCCCeEEEEcCCHHHHHHHHHHHHh
Confidence 1111 1123467889999887532 22335789999999999999999999999999999999999999999976543
Q ss_pred CCC-----CCCeEEccCCCCCCccccEEEEEEeecCCCCccccCCCCCceeeeecccccceEEEecCCccccchHHHHHH
Q 006386 555 DDK-----LKNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLI 629 (647)
Q Consensus 555 ~~~-----~~~i~v~Tvd~fQG~E~diVIis~vrs~~~~~~gfl~d~rrlnVAlTRAk~~l~ivG~~~~l~~~~~~~~l~ 629 (647)
... ..++.|+|||+|||+|+|+||+|+||++..+.+||+.|+||||||+||||++|+||||..+|+.+++|+.|+
T Consensus 520 ~~~~~~~~~~~v~v~TVd~fQG~E~dvVIls~vrs~~~~~~gfl~~~~rlnVAlTRAk~~L~ivg~~~~l~~~~~~~~li 599 (624)
T 2gk6_A 520 SGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLL 599 (624)
T ss_dssp SCSSCHHHHHHSEEECHHHHTTCCEEEEEEEECC------CCTTTCHHHHHHHTTSEEEEEEEEECHHHHTTSHHHHHHH
T ss_pred hccccccccCceEEechhhcCCcccCEEEEEeecCCCCCCccccCCcceeeeehhhhhCcEEEEECHHHHccChHHHHHH
Confidence 221 246899999999999999999999999988889999999999999999999999999999999999999999
Q ss_pred HHHHHcCcccccc
Q 006386 630 EYFEEHAEYLSGS 642 (647)
Q Consensus 630 ~~~~~~~~~~~~~ 642 (647)
+|++++|+++.+.
T Consensus 600 ~~~~~~~~~~~~~ 612 (624)
T 2gk6_A 600 NYYKEQKVLVEGP 612 (624)
T ss_dssp HHHHHTTCCCCSC
T ss_pred HHHHHCCCEEeCC
Confidence 9999999998754
No 3
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=100.00 E-value=1.3e-80 Score=711.29 Aligned_cols=596 Identities=27% Similarity=0.399 Sum_probs=453.3
Q ss_pred cccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChHHHhHcCCeeecceEEeeeeccCCcEEEEEEecCCCCC
Q 006386 5 KTKEKQSAVSLQEFVSVMAPLIDLEKEAEISASITSGASRNLDTAQKKGSTILNLKCVDAQTGLMGKTLLEFQSTKGDVL 84 (647)
Q Consensus 5 ~~~~~~~~~~~~~y~~~~~~ll~~E~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (647)
..+.+.++.++.+|.+.|.||+.+|++++..... ..++.++.+ .+..++.|+.+..|..+. ..
T Consensus 175 ~~~v~~~y~~~~~Y~~~~~~l~~lE~~~~~~~~e--------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~ 237 (800)
T 2wjy_A 175 PQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKE--------------SQTQDNITV-RWDLGLNKKRIAYFTLPK--TD 237 (800)
T ss_dssp CCCCCSCCSCHHHHHHHHHHHHHHHHHHHHHHHH--------------HTCEEEECC-EEEECTTCCEEEEECCCB--CC
T ss_pred ccccccccCCHHHHHHHHHHHHHHHHHhhhhhhh--------------hhhccceEE-EEEecCCCeeEEEEEecc--cc
Confidence 3678889999999999999999999887754211 113445544 456788999999997765 23
Q ss_pred CCCCcCCCCEEEEeeCCCCCCCCceEEEEEEEEeC---CEEEEEecCCCC--CCCCCCeEEEEeccchhHHHHHHHHHHH
Q 006386 85 PAHKFGTHDVVVLKPNKADLGSPALGQGVVYRLKD---SSITVAFDDIPE--EGLNSPLRLEKLANEVTYRRMKDALIQL 159 (647)
Q Consensus 85 ~~~~~~~gD~v~~~~~~~~~~~~~~~~g~v~~~~~---~~i~v~~~~~~~--~~~~~~~~~~~~~~~~t~~r~~~al~~~ 159 (647)
+..+|..||.|.++...+. .......|+|+++.. ..|.|.++.... ......+.++++++++||+||..||..+
T Consensus 238 ~~~~l~~GD~v~l~~~~~~-~~~~~~~g~V~~v~~~~~~~v~l~~~~~~~~p~~~~~~~~v~~~~~~~~~~r~~~aL~~~ 316 (800)
T 2wjy_A 238 SDMRLMQGDEICLRYKGDL-APLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTF 316 (800)
T ss_dssp C--CCCTTCEEEEEECSSS-SCCEEEEEEEEECSBTTBSCEEEEESCCTTCCTTCCSCEEEEECCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCEEEEEECCCC-CCCceeEEEEEEEcCCCCCEEEEEEccCCCCccccCCCceEEEeecCChHHHHHHHHHHH
Confidence 5568999999999965332 233467899999976 678888853322 1233458899999999999999999998
Q ss_pred HhcccCCCCcCccccccCCCCCCccccc--c-cC-CCCCCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHH
Q 006386 160 SKGVQNGPAAGLIPVLFGEQKPTVLKKD--I-AF-KPFNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQ 235 (647)
Q Consensus 160 ~~~~~~~~~~~l~~~l~~~~~p~~~~~~--~-~~-~~~~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~ 235 (647)
.... ......+.+.+++...|...... . .+ ......||++|++||..++. .++++|+||||||||+|+++++..
T Consensus 317 ~~~e-~~~~~~l~~~ll~~~~~~~~~~~~l~~~~~~~~~~~Ln~~Q~~Av~~~l~-~~~~lI~GppGTGKT~ti~~~i~~ 394 (800)
T 2wjy_A 317 AVDE-TSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQ-RPLSLIQGPPGTGKTVTSATIVYH 394 (800)
T ss_dssp HHCT-TSBCHHHHHHHTTCCCCCCCCCCCCCSCCSCTTSCCCCHHHHHHHHHHHT-SSEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHhh-cchhHHHHHHhcCCCCCchhhcccCccccccccccCCCHHHHHHHHHhcc-CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 7632 11122344556665433221110 0 01 12346799999999999997 789999999999999999999999
Q ss_pred HHH-CCCeEEEeccchHHHHHHHHHhcccCceEEEeCCCCC--CChhHHhhhHHHHHhcCCCchhHHHHHHHHHHHHHHH
Q 006386 236 EVK-RGSKILACAASNIAVDNIVERLVPHRVRLVRLGHPAR--LLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKL 312 (647)
Q Consensus 236 l~~-~~~~ILv~a~tn~Avd~l~~rl~~~~~~~vr~g~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 312 (647)
++. .+.+||+|||||.|+|+|.+++.+.+.+++|+|++.+ +...+...+++..+...+.......+. ++..
T Consensus 395 l~~~~~~~ilv~a~tn~A~~~l~~~l~~~g~~vvRlg~~~r~~i~~~~~~~tlh~~~~~~~~~~~l~~l~----~~~~-- 468 (800)
T 2wjy_A 395 LARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQ----QLKD-- 468 (800)
T ss_dssp HHTTCSSCEEEEESSHHHHHHHHHHHHTTTCCEEECCCGGGGGCCCTTGGGBHHHHHHTCTTCHHHHHHH----HHHT--
T ss_pred HHHcCCCcEEEEcCcHHHHHHHHHHHHHhCcceEeecccchhhhcchhhhhhHHHHHHcCccHHHHHHHH----HHHH--
Confidence 987 6899999999999999999999999999999998764 222233344454444333221111111 1100
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceeeeccccccccccCCCCCCEEEEecCCCcchHHHHHHHHh
Q 006386 313 LKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIACWIALLK 392 (647)
Q Consensus 313 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~vi~~T~~~~~~~~l~~~~fd~vIIDEAsq~~e~~~l~~l~~ 392 (647)
......... .+.++.........+++.++||++|+.++++..+....||+||||||+|++++++|+++..
T Consensus 469 -~~~~~~~~~---------~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~~~~l~~~~fd~viIDEAsQ~~e~~~li~l~~ 538 (800)
T 2wjy_A 469 -ETGELSSAD---------EKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVL 538 (800)
T ss_dssp -TTSCCCHHH---------HHHHHHHHHHHHHHHHHHCSEEEEETGGGGCTTTTTCCCSEEEETTGGGSCHHHHHHHHTT
T ss_pred -hhcccChHH---------HHHHHHHHHHHHHhhhccCCEEEEchhhhCChhhhcCCCCEEEEECCCCCCcHHHHHHHHh
Confidence 000000000 0112222233456789999999999999988778778999999999999999999999875
Q ss_pred -cCeeeecCCCCCCCceeccHHHHhcCCCCCHHHHHHHHcCCcccchhhHhhcChhHHHHhhHhhhcCCCCCCChhhhhc
Q 006386 393 -GSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSVAAH 471 (647)
Q Consensus 393 -~~~~vlvGD~~QL~p~v~s~~~~~~g~~~Slf~rl~~~~~~~~~~~L~~qyRm~~~I~~~~s~~fY~~~L~~~~~~~~~ 471 (647)
++++|+||||+||||++.+..+...|++.|+|+||..... ..++|++||||||+|++|+|..||+|.|.+++....+
T Consensus 539 ~~~~~ilvGD~~QLpPvv~s~~a~~~gl~~SlFerL~~~g~--~~~~L~~qYRm~p~I~~f~n~~fY~g~L~~~~~~~~r 616 (800)
T 2wjy_A 539 GAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGI--RPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADR 616 (800)
T ss_dssp TBSEEEEEECTTSCCCCCCCHHHHHTTTTSCHHHHHHHTTC--CCEECCEECSSCHHHHHHHHHHHSTTCCEESSCSGGG
T ss_pred cCCeEEEecccccCCCeecchhhhhcCcchHHHHHHHhCCC--CceEehhhcCCCcHHHHhhHHHhcCCccccCCchhhh
Confidence 5899999999999999999988889999999999987432 2678999999999999999999999999877655443
Q ss_pred ccccccCCcCCCCCCCcEEEEEecCCCccccccCCCCccCHHHHHHHHHHHHHHHHcCCCCCeEEEEcccHHHHHHHHHH
Q 006386 472 MLFDLEGVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKIL 551 (647)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~f~d~~~~~~~~~~~~~~s~~N~~Ea~~v~~~v~~l~~~g~~~~~I~IItpy~~Q~~~l~~l 551 (647)
....... .......|+.|+++.|.+.. ...+.|+.|..||+.|.+++..|+..|+++++|||||||++|+..|++.
T Consensus 617 ~~~~~~~--~~~~~~~p~~f~~~~g~e~~--~~~~~S~~N~~Ea~~V~~~v~~L~~~g~~~~dIgVItPy~~Q~~~I~~~ 692 (800)
T 2wjy_A 617 VKKGFDF--QWPQPDKPMFFYVTQGQEEI--ASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQY 692 (800)
T ss_dssp SCTTCCC--CCSSTTSCEEEEECCCCCEE--CSSBSCEECHHHHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHHHHH
T ss_pred ccccccc--cccCCCCCEEEEEcCCceee--cCCCCcccCHHHHHHHHHHHHHHHHcCCCcccEEEEeccHHHHHHHHHH
Confidence 3221110 11235678999999875422 2335789999999999999999999999999999999999999999975
Q ss_pred HhcCCC-----CCCeEEccCCCCCCccccEEEEEEeecCCCCccccCCCCCceeeeecccccceEEEecCCccccchHHH
Q 006386 552 RSKDDK-----LKNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLK 626 (647)
Q Consensus 552 ~~~~~~-----~~~i~v~Tvd~fQG~E~diVIis~vrs~~~~~~gfl~d~rrlnVAlTRAk~~l~ivG~~~~l~~~~~~~ 626 (647)
+..... ..++.|+|||+|||+|+|+||+|+||++..+.+||+.|+||||||+||||++|+||||..+|+.+++|+
T Consensus 693 L~~~~~~~~~~~~~v~V~TVd~fQG~E~dvVIlS~vrs~~~~~~gfl~d~rrLNVAlTRAk~~LiIvG~~~~l~~~~~w~ 772 (800)
T 2wjy_A 693 MQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWN 772 (800)
T ss_dssp HHHHCSSCHHHHHTSEEECGGGGTTCCEEEEEEECCCCSCCCCCGGGTCHHHHHHHHTSEEEEEEEEECHHHHTSSHHHH
T ss_pred HHhcCcccccccCceEEccccccCCCcCCEEEEEecCCCCccccccccCcchhhhhHHhhhccEEEEECHHHhccCHHHH
Confidence 532111 257999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCcccccc
Q 006386 627 RLIEYFEEHAEYLSGS 642 (647)
Q Consensus 627 ~l~~~~~~~~~~~~~~ 642 (647)
.|++|++++|+|+.+.
T Consensus 773 ~ll~~~~~~~~~~~~~ 788 (800)
T 2wjy_A 773 HLLNYYKEQKVLVEGP 788 (800)
T ss_dssp HHHHHHHHTTCEEESC
T ss_pred HHHHHHHHCCCEEeCC
Confidence 9999999999998754
No 4
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.9e-81 Score=714.34 Aligned_cols=595 Identities=27% Similarity=0.389 Sum_probs=447.7
Q ss_pred cccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChHHHhHcCCeeecceEEeeeeccCCcEEEEEEecCCCCC
Q 006386 5 KTKEKQSAVSLQEFVSVMAPLIDLEKEAEISASITSGASRNLDTAQKKGSTILNLKCVDAQTGLMGKTLLEFQSTKGDVL 84 (647)
Q Consensus 5 ~~~~~~~~~~~~~y~~~~~~ll~~E~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (647)
..+.+.+|.|..+|.+.|.|||.+|.+++.... ...++.++.+ .+..++.++++++|..+... .
T Consensus 177 ~~~v~~~y~~~~~Y~~~~~~ll~lE~~~~~~~~--------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~ 240 (802)
T 2xzl_A 177 IPPLLLRYQDAYEYQRSYGPLIKLEADYDKQLK--------------ESQALEHISV-SWSLALNNRHLASFTLSTFE-S 240 (802)
T ss_dssp -CCCCSSCSSHHHHHHHHHHHHHHHHHHHHHHH--------------CCC--CCBCE-EEEECTTSCEEEEEC-------
T ss_pred ccccccccCCHHHHHHHHHHHHHHHHHhhhhhh--------------hHhhccCceE-eeeccCCCeEEEEEEecccc-c
Confidence 367888999999999999999999998765421 1223344544 44668889999999886532 3
Q ss_pred CCCCcCCCCEEEEeeCCCCCCCCceEEEEEEEEeC---CEEEEEecCCC---CCCCCCCeEEEEeccchhHHHHHHHHHH
Q 006386 85 PAHKFGTHDVVVLKPNKADLGSPALGQGVVYRLKD---SSITVAFDDIP---EEGLNSPLRLEKLANEVTYRRMKDALIQ 158 (647)
Q Consensus 85 ~~~~~~~gD~v~~~~~~~~~~~~~~~~g~v~~~~~---~~i~v~~~~~~---~~~~~~~~~~~~~~~~~t~~r~~~al~~ 158 (647)
++++|..||.|+++...+. .......|+|+++.+ ..|+|.++... +......+.++++++.+||+||..||..
T Consensus 241 ~~~~~~~GD~v~l~~~~~~-~~~~~~~g~V~~v~~~~~~~v~v~~~~~~~~~p~~~~~~~~v~~~~~~~~~~r~~~AL~~ 319 (802)
T 2xzl_A 241 NELKVAIGDEMILWYSGMQ-HPDWEGRGYIVRLPNSFQDTFTLELKPSKTPPPTHLTTGFTAEFIWKGTSYDRMQDALKK 319 (802)
T ss_dssp ---CCCTTCEEEEEECSSS-SSCEEEEEEEEECCC---CCEEEEECCCSSCCCTTCCSSEEEEECCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCEEEEEECCCC-CCceeEEEEEEEECCCCCCEEEEEEeCCCCCCccccCCCeEEEEEecCchHHHHHHHHHH
Confidence 4568999999999965332 223457899999974 57899885321 1122345889999999999999999999
Q ss_pred HHhcccCCCCcCccccccCCCCCCccccc--c-cC-CCCCCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHH
Q 006386 159 LSKGVQNGPAAGLIPVLFGEQKPTVLKKD--I-AF-KPFNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIIL 234 (647)
Q Consensus 159 ~~~~~~~~~~~~l~~~l~~~~~p~~~~~~--~-~~-~~~~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~ 234 (647)
+.... ......+.+.+++...|...... . .+ ......||++|++||..++. .++++|+||||||||+|+++++.
T Consensus 320 ~~~~~-~~~~~~l~~~ll~~~~~~~~~~~~lp~~~~~~~~~~Ln~~Q~~Av~~~l~-~~~~lI~GppGTGKT~~i~~~i~ 397 (802)
T 2xzl_A 320 FAIDK-KSISGYLYYKILGHQVVDISFDVPLPKEFSIPNFAQLNSSQSNAVSHVLQ-RPLSLIQGPPGTGKTVTSATIVY 397 (802)
T ss_dssp HHHCT-TSBCHHHHHHHHTCCCCCCCCCCCCCSCCSCTTSCCCCHHHHHHHHHHTT-CSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHhcc-ccchhHHHHHhcCCccccccccccCcccccccccccCCHHHHHHHHHHhc-CCCEEEECCCCCCHHHHHHHHHH
Confidence 87531 11123355667776544321110 0 11 12346799999999999986 78999999999999999999999
Q ss_pred HHHH-CCCeEEEeccchHHHHHHHHHhcccCceEEEeCCCCC--CChhHHhhhHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 006386 235 QEVK-RGSKILACAASNIAVDNIVERLVPHRVRLVRLGHPAR--LLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGK 311 (647)
Q Consensus 235 ~l~~-~~~~ILv~a~tn~Avd~l~~rl~~~~~~~vr~g~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (647)
++++ .+.+||+|||||.|+|+|.+||.+.+.+++|+|+..+ +...+...+++..+...+.. ....+. .....
T Consensus 398 ~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~g~~ilR~g~~~r~~i~~~~~~~tl~~~~~~~~~~-~l~~l~----~~~~~ 472 (802)
T 2xzl_A 398 HLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLKVVRLTAKSREDVESSVSNLALHNLVGRGAKG-ELKNLL----KLKDE 472 (802)
T ss_dssp HHHHHHCCCEEEEESSHHHHHHHHHHHHHTTCCEEECCCGGGTTSCCTTGGGBHHHHHHTTCCT-HHHHHH----HHHHH
T ss_pred HHHhCCCCeEEEEcCcHHHHHHHHHHHHhhCccEEeecccchhhhcchhhhhhHHHHHHhhcHH-HHHHHH----HHHHh
Confidence 9987 6899999999999999999999999999999998754 23333444555544333222 111111 11111
Q ss_pred HhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceeeeccccccccccCCCCCCEEEEecCCCcchHHHHHHHH
Q 006386 312 LLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIACWIALL 391 (647)
Q Consensus 312 l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~vi~~T~~~~~~~~l~~~~fd~vIIDEAsq~~e~~~l~~l~ 391 (647)
.... ..... +.++.........+++.++||++|+.++....+.. .||+||||||+|+++++.++++.
T Consensus 473 ~~~l-s~~~~-----------~~~~~~~~~~~~~~l~~a~VI~~T~~~~~~~~L~~-~fd~viIDEA~q~~e~~~li~l~ 539 (802)
T 2xzl_A 473 VGEL-SASDT-----------KRFVKLVRKTEAEILNKADVVCCTCVGAGDKRLDT-KFRTVLIDESTQASEPECLIPIV 539 (802)
T ss_dssp HSCC-CHHHH-----------HHHHHHHHHHHHHHHHTCSEEEEETTGGGCTTCCS-CCSEEEETTGGGSCHHHHHHHHT
T ss_pred hccC-CHHHH-----------HHHHHHHHHHHHHHhccCCEEEechhhcChHHHhc-cCCEEEEECccccchHHHHHHHH
Confidence 1100 00000 11111122334678899999999999988776766 99999999999999999999987
Q ss_pred h-cCeeeecCCCCCCCceeccHHHHhcCCCCCHHHHHHHHcCCcccchhhHhhcChhHHHHhhHhhhcCCCCCCChhhhh
Q 006386 392 K-GSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSVAA 470 (647)
Q Consensus 392 ~-~~~~vlvGD~~QL~p~v~s~~~~~~g~~~Slf~rl~~~~~~~~~~~L~~qyRm~~~I~~~~s~~fY~~~L~~~~~~~~ 470 (647)
. ++++|+||||+||||++.+..+...|++.|+|+|+..... ..++|++||||||+|++|+|..||+|+|.+++....
T Consensus 540 ~~~~~lilvGD~~QL~pvv~s~~a~~~gl~~slferl~~~~~--~~~~L~~qYRm~p~I~~f~n~~fY~g~L~~~~~~~~ 617 (802)
T 2xzl_A 540 KGAKQVILVGDHQQLGPVILERKAADAGLKQSLFERLISLGH--VPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQ 617 (802)
T ss_dssp TTBSEEEEEECTTSCCCCCCCHHHHHTTTTCCHHHHHHHTTC--CCEECCEECSSCHHHHHHHHHHHSTTCCEESSCTTT
T ss_pred hCCCEEEEEeCccccCCeechhhhhhcCCchhHHHHHHhcCC--CceEeeeecCCChHHHHHHHHHhcCCccccCCchhh
Confidence 5 5899999999999999999988889999999999987422 357999999999999999999999999987765544
Q ss_pred cccccccCCcCCCCCCCcEEEEEecCCCccccccCCCCccCHHHHHHHHHHHHHHHHcCCCCCeEEEEcccHHHHHHHHH
Q 006386 471 HMLFDLEGVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVVLLKI 550 (647)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~f~d~~~~~~~~~~~~~~s~~N~~Ea~~v~~~v~~l~~~g~~~~~I~IItpy~~Q~~~l~~ 550 (647)
+....... .......|++|+++.|.+.. ...+.|+.|..||+.|.+++..|+..|+++++|||||||++|+..|++
T Consensus 618 r~~~~~~~--~~~~~~~p~~f~~~~g~~~~--~~~~~s~~N~~EA~~V~~~v~~L~~~g~~~~~IgVItpy~~Q~~~I~~ 693 (802)
T 2xzl_A 618 RTVPNSKF--PWPIRGIPMMFWANYGREEI--SANGTSFLNRIEAMNCERIITKLFRDGVKPEQIGVITPYEGQRAYILQ 693 (802)
T ss_dssp TCCTTCCC--CCSSTTCCEEEEECCCCCEE--CTTSSSEECHHHHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHH
T ss_pred hccccccC--CCCCCCCCEEEEEcCCceee--cCCCCCcCCHHHHHHHHHHHHHHHHcCCCcccEEEEcccHHHHHHHHH
Confidence 33222111 11224578899998875322 233578899999999999999999999999999999999999999997
Q ss_pred HHhcCC-----CCCCeEEccCCCCCCccccEEEEEEeecCCCCccccCCCCCceeeeecccccceEEEecCCccccchHH
Q 006386 551 LRSKDD-----KLKNMEVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFL 625 (647)
Q Consensus 551 l~~~~~-----~~~~i~v~Tvd~fQG~E~diVIis~vrs~~~~~~gfl~d~rrlnVAlTRAk~~l~ivG~~~~l~~~~~~ 625 (647)
.+.... ....+.|+|||+|||+|+|+||+|+||++..+.+||+.++||||||+||||++|+||||..+|+.+++|
T Consensus 694 ~L~~~~~l~~~~~~~v~V~TVd~fQG~E~dvVIlS~vrs~~~~~~gfl~d~rrLNVAlTRAk~~LiIvg~~~~l~~~~~w 773 (802)
T 2xzl_A 694 YMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDPRRLNVGLTRAKYGLVILGNPRSLARNTLW 773 (802)
T ss_dssp HHHHHCSSCHHHHHTSEEEEHHHHTTCCEEEEEEECCCCCTTCCCGGGGCHHHHHHHHSSEEEEEEEEECHHHHTTSHHH
T ss_pred HHHHccccccccccceEEcchhhcCCCccCEEEEEeccCCCCCCcccccCccceeeeHhhhhCeEEEEECHHHhccChHH
Confidence 653211 124799999999999999999999999998889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCcccccc
Q 006386 626 KRLIEYFEEHAEYLSGS 642 (647)
Q Consensus 626 ~~l~~~~~~~~~~~~~~ 642 (647)
+.|++|++++|+|+.+.
T Consensus 774 ~~ll~~~~~~~~~~~~~ 790 (802)
T 2xzl_A 774 NHLLIHFREKGCLVEGT 790 (802)
T ss_dssp HHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHcCCeecCC
Confidence 99999999999998763
No 5
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=99.98 E-value=1.3e-31 Score=305.32 Aligned_cols=315 Identities=14% Similarity=0.149 Sum_probs=182.1
Q ss_pred CCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHCC----CeEEEeccchHHHHHHHHHhccc-C--ce
Q 006386 194 NSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRG----SKILACAASNIAVDNIVERLVPH-R--VR 266 (647)
Q Consensus 194 ~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~----~~ILv~a~tn~Avd~l~~rl~~~-~--~~ 266 (647)
...||++|++||.. ..+.++|.||||||||+|++++|.+++..+ .+||++||||.|++++.+|+.+. + ..
T Consensus 7 ~~~Ln~~Q~~av~~---~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~~~ 83 (647)
T 3lfu_A 7 LDSLNDKQREAVAA---PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTSQG 83 (647)
T ss_dssp HTTCCHHHHHHHTC---CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCSCCT
T ss_pred hhcCCHHHHHHHhC---CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhccccC
Confidence 35799999999983 467899999999999999999999999863 69999999999999999999764 1 11
Q ss_pred EEEeCCCCCCChhHHhh---------------------hHHHHHhcCC---CchhHHHHHHHHHHHHHHHhccCCHHH-H
Q 006386 267 LVRLGHPARLLPQVLES---------------------ALDAQVLRGD---NSSLASDIRKEMKALNGKLLKTKDKNT-R 321 (647)
Q Consensus 267 ~vr~g~~~~~~~~~~~~---------------------~l~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~-~ 321 (647)
-+.+++.+++...+... .+...+.... .......+...+............... .
T Consensus 84 ~~~v~Tfhs~~~~il~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~~~~ 163 (647)
T 3lfu_A 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQSYG 163 (647)
T ss_dssp TCEEEEHHHHHHHHHHHTTGGGTCCTTCEEECHHHHHHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHHTTCCCCCC----
T ss_pred CcEEEcHHHHHHHHHHHHHHHhCCCCCCEEeCHHHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHcCCCHHHHHhcc
Confidence 12222211111111000 0000000000 000011111112211111111000000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCceeeecccccc-ccccC---CCCCCEEEEecCCCcchHH--HHHHHH-hcC
Q 006386 322 REIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAV-SRKLD---NTSFDLVIIDEAAQALEIA--CWIALL-KGS 394 (647)
Q Consensus 322 ~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~vi~~T~~~~~-~~~l~---~~~fd~vIIDEAsq~~e~~--~l~~l~-~~~ 394 (647)
......+..+...+...... ...++..+++..++.... ++.+. ..+|++|+|||+|++.+.+ ++..|. .+.
T Consensus 164 ~~~~~~~~~i~~~y~~~~~~--~~~~df~dl~~~~~~~l~~~~~~~~~~~~~~~~ilVDE~QD~~~~q~~ll~~l~~~~~ 241 (647)
T 3lfu_A 164 NPVEQTWQKVYQAYQEACDR--AGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDTG 241 (647)
T ss_dssp CCHHHHHHHHHHHHHHHHHH--HTEEEHHHHHHHHHHHHHHCHHHHHHHHHHCCEEEESSGGGCCHHHHHHHHHHHTTTC
T ss_pred chHHHHHHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCHHHHHHHHhhCCEEEEECcccCCHHHHHHHHHHhcCCC
Confidence 00011111222222111110 111111111111111110 01110 2269999999999998775 344444 347
Q ss_pred eeeecCCCCCCCceeccHHHHhcCCCCCHHHHHHHHcCCcccchhhHhhcChhHHHHhhHhhhcCCCCCCChhhhhcccc
Q 006386 395 RCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSVAAHMLF 474 (647)
Q Consensus 395 ~~vlvGD~~QL~p~v~s~~~~~~g~~~Slf~rl~~~~~~~~~~~L~~qyRm~~~I~~~~s~~fY~~~L~~~~~~~~~~~~ 474 (647)
++++|||++|-... ..|.+...|.++...++....+.|+.||||++.|.+++|.+|+++.......
T Consensus 242 ~l~~vGD~~QsIy~-------frga~~~~~~~~~~~~~~~~~~~L~~nyRs~~~I~~~~n~~~~~~~~~~~~~------- 307 (647)
T 3lfu_A 242 KVMIVGDDDQSIYG-------WRGAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAANALIENNNGRLGKK------- 307 (647)
T ss_dssp EEEEEECGGGCCCG-------GGTCCTTHHHHHHHHCTTCEEEEECBCSSSCHHHHHHHHHHHTTCSSCCCCC-------
T ss_pred EEEEEcCchhhhcc-------ccCCCHHHHHHHHHhCCCCeEEEcccCCCCCHHHHHHHHHHHHhcccccCCc-------
Confidence 89999999995543 2467788899999888776688999999999999999999998764321111
Q ss_pred cccCCcCCCCCCCcEEEEEecCCCccccccCCCCccCHHHHHHHHHHHHHHHHcCCCCCeEEEEcccHHHH
Q 006386 475 DLEGVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQV 545 (647)
Q Consensus 475 ~~~~~~~~~~~~~~~~f~d~~~~~~~~~~~~~~s~~N~~Ea~~v~~~v~~l~~~g~~~~~I~IItpy~~Q~ 545 (647)
.......+.++.++...+ ...|++.|+..|..++..|+++++|+||+|++.|.
T Consensus 308 ----~~~~~~~~~~~~~~~~~~--------------~~~e~~~ia~~I~~l~~~g~~~~diaVL~r~~~~~ 360 (647)
T 3lfu_A 308 ----LWTDGADGEPISLYCAFN--------------ELDEARFVVNRIKTWQDNGGALAECAILYRSNAQS 360 (647)
T ss_dssp ----CBCSSCCCCCEEEEEEEE--------------HHHHHHHHHHHHHHHHHTTCCGGGEEEEESSGGGH
T ss_pred ----cccCCCCCCceEEEecCC--------------hHHHHHHHHHHHHHHHHcCCCccCEEEEEeCchhH
Confidence 001111223454443322 24799999999999999999999999999987664
No 6
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=99.97 E-value=5.2e-32 Score=300.06 Aligned_cols=288 Identities=23% Similarity=0.265 Sum_probs=191.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHHHHHhcccCceEEE
Q 006386 190 FKPFNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVRLVR 269 (647)
Q Consensus 190 ~~~~~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~~~~~~~vr 269 (647)
+.++...||++|++|+..++. .++++|+||||||||+++..++..+...|.+|+++|||+.|+++|.+++..
T Consensus 183 l~~~~~~L~~~Q~~Av~~~~~-~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~------- 254 (574)
T 3e1s_A 183 PKKARKGLSEEQASVLDQLAG-HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGR------- 254 (574)
T ss_dssp CTTTTTTCCHHHHHHHHHHTT-CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTS-------
T ss_pred HHhhcCCCCHHHHHHHHHHHh-CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcc-------
Confidence 334467899999999999986 789999999999999999999999999999999999999999999987521
Q ss_pred eCCCCCCChhHHhhhHHHHHhcCCCchhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006386 270 LGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKN 349 (647)
Q Consensus 270 ~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~ 349 (647)
.... +.. ++..
T Consensus 255 ---~a~T--------ih~----------------------------------------------------------ll~~ 265 (574)
T 3e1s_A 255 ---TAST--------VHR----------------------------------------------------------LLGY 265 (574)
T ss_dssp ---CEEE--------HHH----------------------------------------------------------HTTE
T ss_pred ---cHHH--------HHH----------------------------------------------------------HHcC
Confidence 1110 000 0000
Q ss_pred CceeeeccccccccccCCCCCCEEEEecCCCcchHHHHHHHH----hcCeeeecCCCCCCCceeccHHHHhcCCCCCHHH
Q 006386 350 ADVVLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIACWIALL----KGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFE 425 (647)
Q Consensus 350 ~~vi~~T~~~~~~~~l~~~~fd~vIIDEAsq~~e~~~l~~l~----~~~~~vlvGD~~QL~p~v~s~~~~~~g~~~Slf~ 425 (647)
.. + ......-....+|+||||||+++.... +..|. .+.++|+|||+.||||+.. .+.|.
T Consensus 266 ~~----~--~~~~~~~~~~~~dvlIIDEasml~~~~-~~~Ll~~~~~~~~lilvGD~~QL~~v~~----------g~~~~ 328 (574)
T 3e1s_A 266 GP----Q--GFRHNHLEPAPYDLLIVDEVSMMGDAL-MLSLLAAVPPGARVLLVGDTDQLPPVDA----------GLPLL 328 (574)
T ss_dssp ET----T--EESCSSSSCCSCSEEEECCGGGCCHHH-HHHHHTTSCTTCEEEEEECTTSCCCSSS----------CCHHH
T ss_pred Cc----c--hhhhhhcccccCCEEEEcCccCCCHHH-HHHHHHhCcCCCEEEEEecccccCCccC----------CcHHH
Confidence 00 0 001111123478999999999776553 33333 2479999999999999843 24677
Q ss_pred HHHHHcCCcccchhhHhhcCh--hHHHHhhHhhhcCCCCCCChhhhhcccccccCCcCCCCCCCcEEEEEecCCCccccc
Q 006386 426 RLADLYGDEVTSMLTVQYRMH--EHIMNWSSKQLYNSKIKAHPSVAAHMLFDLEGVKRTSSTEPTLLLIDIAGCDMEEKK 503 (647)
Q Consensus 426 rl~~~~~~~~~~~L~~qyRm~--~~I~~~~s~~fY~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~d~~~~~~~~~~ 503 (647)
.+.... ..+.|+.+||++ +.|..+++.. ..|.+.... ..+.|+.....+
T Consensus 329 ~l~~~~---~~~~L~~~~R~~~~s~I~~~a~~i-~~g~~~~~~--------------------~d~~~~~~~~~~----- 379 (574)
T 3e1s_A 329 ALAQAA---PTIKLTQVYRQAAKNPIIQAAHGL-LHGEAPAWG--------------------DKRLNLTEIEPD----- 379 (574)
T ss_dssp HHHHHS---CEEECCCCCHHHHTCHHHHHHHHH-HTTCCCCCC--------------------BTTEEEEECCST-----
T ss_pred HHHhcC---CEEEcceeEeCCCccHHHHHHHHH-hCCCCcccC--------------------CCeEEEeCCCHH-----
Confidence 776632 268999999998 7799988654 444432110 123344332210
Q ss_pred cCCCCccCHHHHHHHHHHHHHHHHcCCCC-CeEEEEcccHHH---HHHH----HHHHhcCC-------------------
Q 006386 504 DEEDSTMNEGEAEVAMAHAKRLIQSGVHA-SDIGIITPYAAQ---VVLL----KILRSKDD------------------- 556 (647)
Q Consensus 504 ~~~~s~~N~~Ea~~v~~~v~~l~~~g~~~-~~I~IItpy~~Q---~~~l----~~l~~~~~------------------- 556 (647)
..++.+.+.+. ++.+ .++.|+||.+.. +..+ ++.+....
T Consensus 380 ---------~~~~~i~~~~~-----~~~~~~~~~VL~~~~~g~~gv~~lN~~l~~~lnp~~~~~~~~~~~~~~Gd~V~~~ 445 (574)
T 3e1s_A 380 ---------GGARRVALMVR-----ELGGPGAVQVLTPMRKGPLGMDHLNYHLQALFNPGEGGVRIAEGEARPGDTVVQT 445 (574)
T ss_dssp ---------TCHHHHHHHHH-----HTTSGGGCEEEESCSSSTTSHHHHHHHHHHHHSCCSCCEECSSSEECTTCEEEEC
T ss_pred ---------HHHHHHHHHHh-----ccCcccCeEEEEeecCCchhHHHHHHHHHHHhCCCCCceeeCCeEEecCCEEEEe
Confidence 11233333333 4444 678888887654 3332 22221100
Q ss_pred --------------------------------------CCCCe---EEccCCCCCCccccEEEEEEeecCCCCccccCCC
Q 006386 557 --------------------------------------KLKNM---EVSTVDGFQGREKEAIIISMVRSNSKKEVGFLSD 595 (647)
Q Consensus 557 --------------------------------------~~~~i---~v~Tvd~fQG~E~diVIis~vrs~~~~~~gfl~d 595 (647)
....+ .+.|||++||+|+|.||+.+..+.. .+.+
T Consensus 446 ~N~~~~~v~NGdiG~i~~~~~~~l~v~fdg~~v~~~~~~l~~~~~ayA~TIHksQGsEfd~Vil~l~~~~~-----~~l~ 520 (574)
T 3e1s_A 446 KNDYNNEIFNGTLGMVLKAEGARLTVDFDGNVVELTGAELFNLQLGYALTVHRAQGSEWGTVLGVLHEAHM-----PMLS 520 (574)
T ss_dssp SCBTTTTBCTTCEEEEEEECSSCEEEEETTEEEEECGGGGTTEEECSEEEHHHHTTCCEEEEEEEECGGGG-----GGCC
T ss_pred ecCcccceecCceeEEEcCCCCEEEEEECCeEEEEchHHhhhhhheeeeeHHHhCCccCCeEEEEcCCccc-----cccc
Confidence 00011 1369999999999999998765432 4667
Q ss_pred CCceeeeecccccceEEEecCCcc
Q 006386 596 RRRMNVAVTRARRQCCLVCDTETV 619 (647)
Q Consensus 596 ~rrlnVAlTRAk~~l~ivG~~~~l 619 (647)
++++|||+||||+.|+|+|+.+.+
T Consensus 521 r~LlYvAiTRAk~~l~lvg~~~~l 544 (574)
T 3e1s_A 521 RNLVYTALTRARDRFFSAGSASAW 544 (574)
T ss_dssp HHHHHHHHHTEEEEEEEEECHHHH
T ss_pred cceEEEEeeeeeeEEEEEECHHHH
Confidence 899999999999999999987655
No 7
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=99.97 E-value=6.2e-31 Score=301.38 Aligned_cols=312 Identities=16% Similarity=0.159 Sum_probs=180.6
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHC----CCeEEEeccchHHHHHHHHHhccc-Cc--eE
Q 006386 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKR----GSKILACAASNIAVDNIVERLVPH-RV--RL 267 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~----~~~ILv~a~tn~Avd~l~~rl~~~-~~--~~ 267 (647)
..||++|++||.. ..+..+|.|+||||||+|++++|++++.. +.+||++||||+|+++|.+|+.+. +. .-
T Consensus 10 ~~Ln~~Q~~av~~---~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~~~~ 86 (724)
T 1pjr_A 10 AHLNKEQQEAVRT---TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAAED 86 (724)
T ss_dssp TTSCHHHHHHHHC---CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGGGTT
T ss_pred hhCCHHHHHHHhC---CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhcccccC
Confidence 5799999999986 36789999999999999999999999874 369999999999999999998764 11 11
Q ss_pred EEeCCCCCCChhHHhhhHHHHHhcC---CCc---------hh----------------HHHHHHHHHHHHHHHhccCCHH
Q 006386 268 VRLGHPARLLPQVLESALDAQVLRG---DNS---------SL----------------ASDIRKEMKALNGKLLKTKDKN 319 (647)
Q Consensus 268 vr~g~~~~~~~~~~~~~l~~~~~~~---~~~---------~~----------------~~~~~~~~~~~~~~l~~~~~~~ 319 (647)
+.+++.++ +....+....... .+. .+ ...+...+..+...........
T Consensus 87 ~~v~Tfhs----~~~~ilr~~~~~~g~~~~f~i~d~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~ 162 (724)
T 1pjr_A 87 VWISTFHS----MCVRILRRDIDRIGINRNFSILDPTDQLSVMKTILKEKNIDPKKFEPRTILGTISAAKNELLPPEQFA 162 (724)
T ss_dssp SEEEEHHH----HHHHHHHHHGGGGTCCTTCEECCHHHHHHHHHHHHHTTSCTTTTCCHHHHHHHHHHHHHTTCCHHHHT
T ss_pred cEEeeHHH----HHHHHHHHHHHHhCCCCCCEECCHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 12222211 1111111111000 000 00 0111111111111000000000
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceeeecccccc-ccccC---CCCCCEEEEecCCCcchHH--HHHHHH
Q 006386 320 --TRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAV-SRKLD---NTSFDLVIIDEAAQALEIA--CWIALL 391 (647)
Q Consensus 320 --~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~vi~~T~~~~~-~~~l~---~~~fd~vIIDEAsq~~e~~--~l~~l~ 391 (647)
........+..+...|.+... ....++..+++..+..-.. ++.+. ..+|++|+|||+|++...+ ++..|.
T Consensus 163 ~~~~~~~~~~~~~iy~~Y~~~l~--~~~~lDf~Dll~~~~~ll~~~~~v~~~~~~rf~~IlVDEfQDtn~~Q~~ll~~L~ 240 (724)
T 1pjr_A 163 KRASTYYEKVVSDVYQEYQQRLL--RNHSLDFDDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLA 240 (724)
T ss_dssp TC---CHHHHHHHHHHHHHHHHH--HTTEECTTHHHHHHHHHHHHCHHHHHHHHHHCSEEEESSGGGCCHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHhhCHHHHHHHHhhCCEEEEEhHhcCCHHHHHHHHHHH
Confidence 000001111111111111110 0112222233222222111 11111 2379999999999998875 344444
Q ss_pred h-cCeeeecCCCCCCCceeccHHHHhcCCCCCHHHHHHHHcCCcccchhhHhhcChhHHHHhhHhhhcCCCCCCChhhhh
Q 006386 392 K-GSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSVAA 470 (647)
Q Consensus 392 ~-~~~~vlvGD~~QL~p~v~s~~~~~~g~~~Slf~rl~~~~~~~~~~~L~~qyRm~~~I~~~~s~~fY~~~L~~~~~~~~ 470 (647)
. +.++++|||++|....+ .|.+...|.++.+.++....+.|..|||+++.|.+++|.++.++.-.....
T Consensus 241 ~~~~~l~vVGD~~QsIY~f-------RGA~~~~~~~f~~~~~~~~~i~L~~NyRSt~~Il~~an~li~~n~~~~~k~--- 310 (724)
T 1pjr_A 241 ERFQNICAVGDADQSIYRW-------RGADIQNILSFERDYPNAKVILLEQNYRSTKRILQAANEVIEHNVNRKPKR--- 310 (724)
T ss_dssp TTTCCEEEEECGGGCCCGG-------GTCCTHHHHTHHHHSTTCEEEEECBCSSSCHHHHHHHHHHHTTCSSCCCCC---
T ss_pred cCCCeEEEEECchhhcccc-------cCCCHHHHHHHHHHCCCCcEEECCCCCCCCHHHHHHHHHHHHhCccccCcc---
Confidence 4 36899999999966543 366677788888888776678999999999999999999998654221110
Q ss_pred cccccccCCcCCCCCCCcEEEEEecCCCccccccCCCCccCHHHHHHHHHHHHHHHH-cCCCCCeEEEEcccHHHHHH
Q 006386 471 HMLFDLEGVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQ-SGVHASDIGIITPYAAQVVL 547 (647)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~f~d~~~~~~~~~~~~~~s~~N~~Ea~~v~~~v~~l~~-~g~~~~~I~IItpy~~Q~~~ 547 (647)
+......+.++.++...+ ...|++.|+..|..++. .|+++++|+||++.++|...
T Consensus 311 --------l~~~~~~g~~i~~~~~~~--------------~~~Ea~~va~~I~~l~~~~g~~~~diAIL~R~~~~~~~ 366 (724)
T 1pjr_A 311 --------IWTENPEGKPILYYEAMN--------------EADEAQFVAGRIREAVERGERRYRDFAVLYRTNAQSRV 366 (724)
T ss_dssp --------CBCSSCCCCCEEEEEEEE--------------HHHHHHHHHHHHHHHHTTTSCCGGGEEEEESSGGGHHH
T ss_pred --------cccccCCCCceEEEecCC--------------HHHHHHHHHHHHHHHHHhcCCChhheeeeeecchhHHH
Confidence 001111233444443321 24789999999999987 78999999999988776543
No 8
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=6.5e-30 Score=291.71 Aligned_cols=306 Identities=14% Similarity=0.100 Sum_probs=174.1
Q ss_pred CCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHC----CCeEEEeccchHHHHHHHHHhccc-C---ceE
Q 006386 196 NLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKR----GSKILACAASNIAVDNIVERLVPH-R---VRL 267 (647)
Q Consensus 196 ~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~----~~~ILv~a~tn~Avd~l~~rl~~~-~---~~~ 267 (647)
.||++|++||.. ..+..+|.|+||||||+|+++++.+++.. +.+||++||||+|+++|.+|+.+. + ..-
T Consensus 2 ~L~~~Q~~av~~---~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~~~~ 78 (673)
T 1uaa_A 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKEARG 78 (673)
T ss_dssp CCCHHHHHHHHC---CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTTTTTT
T ss_pred CCCHHHHHHHhC---CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCcccccC
Confidence 599999999985 36899999999999999999999999864 379999999999999999998754 1 111
Q ss_pred EEeCCCCCCChhHHhhhHHHHHhc--C-CC------------------------chhHHHHHHHHHHHHHHHhccCCHHH
Q 006386 268 VRLGHPARLLPQVLESALDAQVLR--G-DN------------------------SSLASDIRKEMKALNGKLLKTKDKNT 320 (647)
Q Consensus 268 vr~g~~~~~~~~~~~~~l~~~~~~--~-~~------------------------~~~~~~~~~~~~~~~~~l~~~~~~~~ 320 (647)
+.+++.++ +....+...... . .. ......+...+..+............
T Consensus 79 ~~v~Tfhs----~~~~il~~~~~~~g~~~~~~i~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~~ 154 (673)
T 1uaa_A 79 LMISTFHT----LGLDIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPSQAAA 154 (673)
T ss_dssp SEEEEHHH----HHHHHHHHHHHHTTCCCCCCEECHHHHHHHHHHHTSTTSCSCHHHHHHHHHHHHHHHTTTCCTTHHHH
T ss_pred CEEEeHHH----HHHHHHHHHHHHhCCCCCCEEeCHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHcCCCHHHHHH
Confidence 22222211 111111111100 0 00 00111111111111110000000000
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceeeecccccc-cccc---CCCCCCEEEEecCCCcchHH--HHHHHHh
Q 006386 321 --RREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAV-SRKL---DNTSFDLVIIDEAAQALEIA--CWIALLK 392 (647)
Q Consensus 321 --~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~vi~~T~~~~~-~~~l---~~~~fd~vIIDEAsq~~e~~--~l~~l~~ 392 (647)
.......+..+...|...... ...++..+++..+..... ++.+ -..+|++|+|||+|++...+ ++..|..
T Consensus 155 ~~~~~~~~~~~~i~~~Y~~~l~~--~~~lDfdDll~~~~~lL~~~~~~~~~~~~~~~~ilVDEfQDt~~~Q~~ll~~L~~ 232 (673)
T 1uaa_A 155 SAIGERDRIFAHCYGLYDAHLKA--CNVLDFDDLILLPTLLLQANEEVRKRWQNKIRYLLVDEYQDTNTSQYELVKLLVG 232 (673)
T ss_dssp TCCSHHHHHHHHHHHHHHHHHHH--HTCEEHHHHHHHHHHHHHHCHHHHHHHHTTCSEEEESCGGGCBHHHHHHHHHHHT
T ss_pred HhhhhHHHHHHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhChHHHHHHHhhCcEEEEeccccCCHHHHHHHHHHhc
Confidence 000111122222222211110 001111111111111110 0111 12489999999999998775 3444544
Q ss_pred -cCeeeecCCCCCCCceeccHHHHhcCCCCCHHHHHHHHcCCcccchhhHhhcChhHHHHhhHhhhcCCCCCCChhhhhc
Q 006386 393 -GSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSVAAH 471 (647)
Q Consensus 393 -~~~~vlvGD~~QL~p~v~s~~~~~~g~~~Slf~rl~~~~~~~~~~~L~~qyRm~~~I~~~~s~~fY~~~L~~~~~~~~~ 471 (647)
+.++++|||++|....+ .|.+...|.++...++....+.|+.|||+++.|.+++|.++.++......
T Consensus 233 ~~~~l~~vGD~~QsIy~f-------rga~~~~~~~~~~~~~~~~~~~L~~nyRs~~~I~~~an~~~~~~~~~~~~----- 300 (673)
T 1uaa_A 233 SRARFTVVGDDDQSIYSW-------RGARPQNLVLLSQDFPALKVIKLEQNYRSSGRILKAANILIANNPHVFEK----- 300 (673)
T ss_dssp TTCCEEEECCGGGCCCGG-------GTBCTTHHHHHHHHSTTCEEECCCCBSSSCHHHHHHHHHHHHTSCCSSCC-----
T ss_pred CCCeEEEEeCchhhhhhc-------cCCCHHHHHHHHHhCCCCeEEECCCCCCCChHHHHHHHHHHHhchhcccc-----
Confidence 47899999999965542 36667888899888876667899999999999999999998764321110
Q ss_pred ccccccCCcCCCCCCCcEEEEEecCCCccccccCCCCccCHHHHHHHHHHHHHHH-HcCCCCCeEEEEcccH
Q 006386 472 MLFDLEGVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLI-QSGVHASDIGIITPYA 542 (647)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~f~d~~~~~~~~~~~~~~s~~N~~Ea~~v~~~v~~l~-~~g~~~~~I~IItpy~ 542 (647)
.+......+.++.++...+ ...|++.|+..|..++ ..|+++++|+||++.+
T Consensus 301 ------~l~~~~~~g~~i~~~~~~~--------------~~~e~~~va~~I~~l~~~~g~~~~diaVL~r~~ 352 (673)
T 1uaa_A 301 ------RLFSELGYGAELKVLSANN--------------EEHEAERVTGELIAHHFVNKTQYKDYAILYRGN 352 (673)
T ss_dssp ------CCCBSSCCCCCBEEEECSS--------------HHHHHHHHHHHHHHHHHHHCCCTTTEEEEESSS
T ss_pred ------cccccCCCCCCceEEecCC--------------HHHHHHHHHHHHHHHHhccCCCccCEEEEEech
Confidence 0000001122333332211 2478999999999988 6789999999997543
No 9
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=99.96 E-value=1.9e-29 Score=274.47 Aligned_cols=182 Identities=20% Similarity=0.195 Sum_probs=120.8
Q ss_pred CCCCHHHHHHHHHHHcc----CCeEEEEcCCCCchHHHHHHHHHHHHHCCC-eEEEeccchHHHHHHHHHhcccCceEEE
Q 006386 195 SNLDHSQKDAISKALSS----KNVFMLHGPPGTGKTTTVVEIILQEVKRGS-KILACAASNIAVDNIVERLVPHRVRLVR 269 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~----~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~-~ILv~a~tn~Avd~l~~rl~~~~~~~vr 269 (647)
..||++|++|+..++.. .++++|.||||||||+++..++..+...+. +|+++||||.|+++|.+++...
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~------ 97 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKE------ 97 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSC------
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhccc------
Confidence 47999999999987653 469999999999999999999999998886 8999999999999999986211
Q ss_pred eCCCCCCChhHHhhhHHHHHhcCCCchhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006386 270 LGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKN 349 (647)
Q Consensus 270 ~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~ 349 (647)
... +...+..... ....
T Consensus 98 ----~~T--------~h~~~~~~~~---------------------------------------------------~~~~ 114 (459)
T 3upu_A 98 ----AST--------IHSILKINPV---------------------------------------------------TYEE 114 (459)
T ss_dssp ----EEE--------HHHHHTEEEE---------------------------------------------------ECSS
T ss_pred ----hhh--------HHHHhccCcc---------------------------------------------------cccc
Confidence 110 1110000000 0000
Q ss_pred CceeeeccccccccccCCCCCCEEEEecCCCcchHHHHHHHH----hcCeeeecCCCCCCCceeccHHHHhcCCCCCHHH
Q 006386 350 ADVVLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIACWIALL----KGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFE 425 (647)
Q Consensus 350 ~~vi~~T~~~~~~~~l~~~~fd~vIIDEAsq~~e~~~l~~l~----~~~~~vlvGD~~QL~p~v~s~~~~~~g~~~Slf~ 425 (647)
. ..+.. ........+++||||||+++.... +..|. .+.++++|||+.|+||+..+.. ...+.
T Consensus 115 ~-~~~~~-----~~~~~~~~~~~iiiDE~~~~~~~~-~~~l~~~~~~~~~~~~vGD~~Ql~~v~~g~~-------~~~l~ 180 (459)
T 3upu_A 115 N-VLFEQ-----KEVPDLAKCRVLICDEVSMYDRKL-FKILLSTIPPWCTIIGIGDNKQIRPVDPGEN-------TAYIS 180 (459)
T ss_dssp C-EEEEE-----CSCCCCSSCSEEEESCGGGCCHHH-HHHHHHHSCTTCEEEEEECTTSCCCCCTTSC-------SCCCC
T ss_pred c-chhcc-----cccccccCCCEEEEECchhCCHHH-HHHHHHhccCCCEEEEECCHHHcCCccCCcc-------hHhHH
Confidence 0 00000 011122378999999999775443 22232 2579999999999999966421 11111
Q ss_pred HHHHHcCCcccchhhHhhcChhHHHHhhHhhhcCC
Q 006386 426 RLADLYGDEVTSMLTVQYRMHEHIMNWSSKQLYNS 460 (647)
Q Consensus 426 rl~~~~~~~~~~~L~~qyRm~~~I~~~~s~~fY~~ 460 (647)
.+... +....+.|+.+||+++.|.++++.+..+.
T Consensus 181 ~~~~~-~~~~~~~L~~~~R~~~~I~~~a~~lr~g~ 214 (459)
T 3upu_A 181 PFFTH-KDFYQCELTEVKRSNAPIIDVATDVRNGK 214 (459)
T ss_dssp GGGTC-TTEEEEECCCCCCCCCHHHHHHHHHHTTC
T ss_pred HHHhc-CCCcEEeceeeeeCCcHHHHHHHHHHcCC
Confidence 11111 23447889999999999999999876543
No 10
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.95 E-value=2.7e-27 Score=265.11 Aligned_cols=339 Identities=22% Similarity=0.222 Sum_probs=175.3
Q ss_pred CHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH----CCCeEEEeccchHHHHHHHHHhcccCceEEEeCC-
Q 006386 198 DHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK----RGSKILACAASNIAVDNIVERLVPHRVRLVRLGH- 272 (647)
Q Consensus 198 n~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~----~~~~ILv~a~tn~Avd~l~~rl~~~~~~~vr~g~- 272 (647)
++.|+.|+..++. .++++|+||||||||+|+..++..+.. .+.+|+++|||+.|++.|.+.+....... .+..
T Consensus 151 ~~~Q~~Ai~~~l~-~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l-~l~~~ 228 (608)
T 1w36_D 151 INWQKVAAAVALT-RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQL-PLTDE 228 (608)
T ss_dssp CCHHHHHHHHHHT-BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHS-SCCSC
T ss_pred CHHHHHHHHHHhc-CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcC-CCCHH
Confidence 7899999999996 789999999999999999999998874 46799999999999999998875421000 0000
Q ss_pred -------CCCCChhHHhhhHHHHHhcCCCchhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006386 273 -------PARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTD 345 (647)
Q Consensus 273 -------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 345 (647)
.....+.+. ..
T Consensus 229 ~~~~~~~~~~Tih~ll----~~---------------------------------------------------------- 246 (608)
T 1w36_D 229 QKKRIPEDASTLHRLL----GA---------------------------------------------------------- 246 (608)
T ss_dssp CCCSCSCCCBTTTSCC----------------------------------------------------------------
T ss_pred HHhccchhhhhhHhhh----cc----------------------------------------------------------
Confidence 000000000 00
Q ss_pred HhhcCceeeeccc--cccccccCCCCCCEEEEecCCCcchHHHHHHHH----hcCeeeecCCCCCCCceeccHH------
Q 006386 346 VIKNADVVLTTLT--GAVSRKLDNTSFDLVIIDEAAQALEIACWIALL----KGSRCILAGDHLQLPPTVQSVE------ 413 (647)
Q Consensus 346 ~l~~~~vi~~T~~--~~~~~~l~~~~fd~vIIDEAsq~~e~~~l~~l~----~~~~~vlvGD~~QL~p~v~s~~------ 413 (647)
+.. ...........+|++|||||+++..+. +..|+ .+.++||+||+.||||+..+..
T Consensus 247 ----------~~~~~~~~~~~~~~l~~d~lIIDEAsml~~~~-~~~Ll~~l~~~~~liLvGD~~QL~~V~~G~vl~dl~~ 315 (608)
T 1w36_D 247 ----------QPGSQRLRHHAGNPLHLDVLVVDEASMIDLPM-MSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICA 315 (608)
T ss_dssp -------------------CTTSCCSCSEEEECSGGGCBHHH-HHHHHHTCCTTCEEEEEECTTSGGGTSTTBCHHHHGG
T ss_pred ----------CCCchHHHhccCCCCCCCEEEEechhhCCHHH-HHHHHHhCCCCCEEEEEcchhhcCCCCCCcHHHHHHH
Confidence 000 000000112378999999999776543 22232 3489999999999999865421
Q ss_pred HHhcCCCCCHHHHHHHHcCCc--------------ccchhhHhhcChhH--HHHhhHhhhcCCCCCCChhhhhccccccc
Q 006386 414 AEKKGLGRTLFERLADLYGDE--------------VTSMLTVQYRMHEH--IMNWSSKQLYNSKIKAHPSVAAHMLFDLE 477 (647)
Q Consensus 414 ~~~~g~~~Slf~rl~~~~~~~--------------~~~~L~~qyRm~~~--I~~~~s~~fY~~~L~~~~~~~~~~~~~~~ 477 (647)
....|++.++++++...++.. ..+.|+++||++++ |..+++.. ..|..............++.
T Consensus 316 ~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~R~~~~s~I~~la~~i-~~g~~~~~~~~l~~~~~d~~ 394 (608)
T 1w36_D 316 YANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAI-NRGDKTAVKTVFQQDFTDIE 394 (608)
T ss_dssp GGTTCCCHHHHHHHHHHSSSCCCCCSTTTTHHHHTTEEECCCCCCSSCCTTHHHHHHHH-TSCHHHHHTTTSGGGCCSSB
T ss_pred HHhccccHHHHHHHHHhcCcccccccccccccccccEEecceeeeeCCcchHHHHHHHH-hcCCchhHHHHhcCCCCceE
Confidence 123578888999988764321 15789999999877 99888644 33321100000000000000
Q ss_pred CCcC--------------------------CCCCC------CcEEEE-EecCCCc---------cccccCCCCc-----c
Q 006386 478 GVKR--------------------------TSSTE------PTLLLI-DIAGCDM---------EEKKDEEDST-----M 510 (647)
Q Consensus 478 ~~~~--------------------------~~~~~------~~~~f~-d~~~~~~---------~~~~~~~~s~-----~ 510 (647)
.... ...+. ..+.++ .+..... .+.....+.. .
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vL~~~~~g~~gv~~lN~~i~~~l~~~~~~~~~~~~ 474 (608)
T 1w36_D 395 KRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHS 474 (608)
T ss_dssp CCBCCSTTTHHHHHHHHHHHTHHHHHHHHTCCCSSTTHHHHTTEEEEESCSSSSSSHHHHHHHHHGGGTSCC--------
T ss_pred EEecCChHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHhhhhhhCCccCCchhHHHHHHHHHHHhCccCcccccccc
Confidence 0000 00000 011111 1111000 0000000000 0
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCeEEEEcccHHHHH-HHH-------HH-HhcCCCCCCeEEccCCCCCCccccEEEEEE
Q 006386 511 NEGEAEVAMAHAKRLIQSGVHASDIGIITPYAAQVV-LLK-------IL-RSKDDKLKNMEVSTVDGFQGREKEAIIISM 581 (647)
Q Consensus 511 N~~Ea~~v~~~v~~l~~~g~~~~~I~IItpy~~Q~~-~l~-------~l-~~~~~~~~~i~v~Tvd~fQG~E~diVIis~ 581 (647)
....-+.|+.. ++-...|+...+||+|++...... .+. .. ....+......+.|||++||.|+|.||+..
T Consensus 475 ~~~~Gd~Vm~~-~Nd~~~gl~NGdiG~V~~~~~~l~v~f~~~dg~~~~~~~~~l~~l~~~~a~TihksqG~e~~~v~~~~ 553 (608)
T 1w36_D 475 RWYEGRPVMIA-RNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALIL 553 (608)
T ss_dssp -------------------------------------------------CCSCCCSCSSCSEEETTTTTTCCBSEEEEEC
T ss_pred cccCCCeeeEe-eechhhcccCCCeEEEEEcCCeEEEEEECCCCcEEEechHHCCccceEEEEEEEecccccCCeEEEEe
Confidence 00011111111 111223677889999998753210 010 00 001123455678999999999999999976
Q ss_pred eecCCCCccccCCCCCceeeeecccccceEEEecCCc
Q 006386 582 VRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTET 618 (647)
Q Consensus 582 vrs~~~~~~gfl~d~rrlnVAlTRAk~~l~ivG~~~~ 618 (647)
..... ...+++.+|||+||||+.|+|+|+...
T Consensus 554 ~~~~~-----~~~~~~~~Yva~tRa~~~l~l~~~~~~ 585 (608)
T 1w36_D 554 PSQRT-----PVVTRELVYTAVTRARRRLSLYADERI 585 (608)
T ss_dssp CSSCC-----SSSCHHHHHHHHTTBSSCEEEECCTTH
T ss_pred CCCcc-----chhhhhhHHhhhhhhhceEEEEECHHH
Confidence 43321 244778899999999999999997653
No 11
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=99.92 E-value=8.4e-25 Score=230.07 Aligned_cols=275 Identities=17% Similarity=0.162 Sum_probs=171.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHHHHHhcccCceEEEeCCCCCCChhHHhhhHHHHHhc
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVRLVRLGHPARLLPQVLESALDAQVLR 291 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~~~~~~~vr~g~~~~~~~~~~~~~l~~~~~~ 291 (647)
..+.+|.||||||||+.+.+.+. ..++|++|||+.|++++.+++.+.+.. .... ..-.+++..+
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~-----~~~~lVlTpT~~aa~~l~~kl~~~~~~-----~~~~----~~V~T~dsfL-- 224 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVN-----FEEDLILVPGRQAAEMIRRRANASGII-----VATK----DNVRTVDSFL-- 224 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCC-----TTTCEEEESCHHHHHHHHHHHTTTSCC-----CCCT----TTEEEHHHHH--
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc-----cCCeEEEeCCHHHHHHHHHHhhhcCcc-----cccc----ceEEEeHHhh--
Confidence 46899999999999999988763 268899999999999999998543110 0000 0000111110
Q ss_pred CCCchhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceeeeccccccccccCCCCCC
Q 006386 292 GDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVSRKLDNTSFD 371 (647)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~vi~~T~~~~~~~~l~~~~fd 371 (647)
+.. .......+|
T Consensus 225 -------------------------------------------------------~~~-------------~~~~~~~~d 236 (446)
T 3vkw_A 225 -------------------------------------------------------MNY-------------GKGARCQFK 236 (446)
T ss_dssp -------------------------------------------------------HTT-------------TSSCCCCCS
T ss_pred -------------------------------------------------------cCC-------------CCCCCCcCC
Confidence 000 001123589
Q ss_pred EEEEecCCCcchHHH--HHHHHhcCeeeecCCCCCCCceeccHHHHhcCCCCCHHHHHHHHcCCcccchhhHhhcChhHH
Q 006386 372 LVIIDEAAQALEIAC--WIALLKGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHEHI 449 (647)
Q Consensus 372 ~vIIDEAsq~~e~~~--l~~l~~~~~~vlvGD~~QL~p~v~s~~~~~~g~~~Slf~rl~~~~~~~~~~~L~~qyRm~~~I 449 (647)
+||||||+++....+ +..+.+..+++++||++||||+.... ++... ..+...... ....++.+|||++++
T Consensus 237 ~liiDE~sm~~~~~l~~l~~~~~~~~vilvGD~~Qlp~v~~~~-----~~~~~--~~~~~l~~~-~~~~~~~SyR~p~dv 308 (446)
T 3vkw_A 237 RLFIDEGLMLHTGCVNFLVEMSLCDIAYVYGDTQQIPYINRVT-----GFPYP--AHFAKLEVD-EVETRRTTLRCPADV 308 (446)
T ss_dssp EEEEETGGGSCHHHHHHHHHHTTCSEEEEEECTTSCCCCCCST-----TCCCC--HHHHSCCCS-EEEEECEESSCCHHH
T ss_pred EEEEeCcccCCHHHHHHHHHhCCCCEEEEecCcccccCcccCC-----Cccch--hhhhhcccC-cEEEeeeEeCCCHHH
Confidence 999999996654432 33344569999999999999996543 22211 112111111 245689999999999
Q ss_pred HHhhHhhhcCCCCCCChhhhhcccccccCCcCCCCCCCcEEEEEecCCCccccccCCCCccCHHHHHHHHHHHHHHHHcC
Q 006386 450 MNWSSKQLYNSKIKAHPSVAAHMLFDLEGVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLIQSG 529 (647)
Q Consensus 450 ~~~~s~~fY~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~d~~~~~~~~~~~~~~s~~N~~Ea~~v~~~v~~l~~~g 529 (647)
+.+.+.. |++.+..... ....+.+....+... ++.. .
T Consensus 309 ~~lLs~l-Y~~~V~t~s~-----------------~~~sv~~~~I~~~~~----------~~~~---------------~ 345 (446)
T 3vkw_A 309 THFLNQR-YEGHVMCTSS-----------------EKKSVSQEMVSGAAS----------INPV---------------S 345 (446)
T ss_dssp HHHHHTT-SSSCCEECCC-----------------CCCCEEEEECCCGGG----------CCTT---------------T
T ss_pred HHHHHhh-cCCceEECCC-----------------cCceEEEeccccccc----------cccc---------------c
Confidence 9999876 7765432111 123334433333110 0000 0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhcCCCCCCeE-EccCCCCCCccccEEEEEEeecCCCCccccCCCCCceeeeeccccc
Q 006386 530 VHASDIGIITPYAAQVVLLKILRSKDDKLKNME-VSTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARR 608 (647)
Q Consensus 530 ~~~~~I~IItpy~~Q~~~l~~l~~~~~~~~~i~-v~Tvd~fQG~E~diVIis~vrs~~~~~~gfl~d~rrlnVAlTRAk~ 608 (647)
.++ .--|||+..+.+..+.+. ++. +.|||++||.|+|.|.+ |+.+......|..+..++|||+||||+
T Consensus 346 ~~~-~g~iLtftq~~k~~L~~~--------G~~~~~Tv~e~QG~tf~~Vtl--vr~~~~~~~l~~~~~~~~~VALTRh~~ 414 (446)
T 3vkw_A 346 KPL-KGKILTFTQSDKEALLSR--------GYADVHTVHEVQGETYADVSL--VRLTPTPVSIIARDSPHVLVSLSRHTK 414 (446)
T ss_dssp SCC-CSEEEESSHHHHHHHHTT--------TCCSCEETGGGTTCCEEEEEE--EECCCSCCTTCSTTCHHHHHHHSSEEE
T ss_pred CCC-CCeEEEcCHHHHHHHHHh--------CCCCccCHHHcCCcccCeEEE--EECCCCCcccccCCccceEEEeecCCC
Confidence 111 235678888777776632 334 89999999999999887 444332222344578899999999999
Q ss_pred ceEEEecCCccccchHHHHHHHHHHHcCc
Q 006386 609 QCCLVCDTETVSSDGFLKRLIEYFEEHAE 637 (647)
Q Consensus 609 ~l~ivG~~~~l~~~~~~~~l~~~~~~~~~ 637 (647)
+|.++.-. +..|.+.+..+..-..
T Consensus 415 ~L~~~tv~-----~D~~~~~i~~~~~~~~ 438 (446)
T 3vkw_A 415 SLKYYTVV-----MDPLVSIIRDLERVSS 438 (446)
T ss_dssp EEEEEESS-----CCHHHHHHHHHHHSCH
T ss_pred EEEEEEec-----CChHHHHHHHhhhhhH
Confidence 99998632 5566777777765443
No 12
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=99.88 E-value=4.9e-22 Score=239.52 Aligned_cols=66 Identities=20% Similarity=0.387 Sum_probs=58.2
Q ss_pred CCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHCC------CeEEEeccchHHHHHHHHHhcc
Q 006386 194 NSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRG------SKILACAASNIAVDNIVERLVP 262 (647)
Q Consensus 194 ~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~------~~ILv~a~tn~Avd~l~~rl~~ 262 (647)
..+||++|++||.. ..+..+|.|+||||||+|++++|.+++..+ .+||++||||+|+++|.+|+..
T Consensus 8 ~~~~t~eQ~~~i~~---~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 8 DSTWTDDQWNAIVS---TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp --CCCHHHHHHHHC---CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhC---CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 45799999999986 356899999999999999999999998764 4899999999999999999865
No 13
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=99.82 E-value=1.7e-19 Score=216.76 Aligned_cols=83 Identities=16% Similarity=0.171 Sum_probs=60.4
Q ss_pred CCCEEEEecCCCcchHH--HHHHHHh---cCeeeecCCCCCCCceeccHHHHhcCCCCCHHHHHHHHcCCcccchhhHhh
Q 006386 369 SFDLVIIDEAAQALEIA--CWIALLK---GSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQY 443 (647)
Q Consensus 369 ~fd~vIIDEAsq~~e~~--~l~~l~~---~~~~vlvGD~~QL~p~v~s~~~~~~g~~~Slf~rl~~~~~~~~~~~L~~qy 443 (647)
+|++|+|||+|+....+ ++..|.. +..+++|||++|-..-++ |.+...|.++...+. ..+.|.+||
T Consensus 377 r~~~ilVDEfQDtn~~Q~~il~~L~~~~~~~~l~~VGD~kQSIY~FR-------GAd~~~~~~~~~~~~--~~~~L~~Ny 447 (1180)
T 1w36_B 377 RFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFR-------GADIFTYMKARSEVH--AHYTLDTNW 447 (1180)
T ss_dssp HCSEEEECSGGGCCHHHHHHHHHHHTTCTTCEEEEEECGGGCCCGGG-------TCCHHHHHHHHHHCC--CEEECCEET
T ss_pred CCCEEEEECCccCCHHHHHHHHHHHcCCCCCeEEEEECCccccccCc-------CCCHHHHHHHHHhcC--CceeCCCCc
Confidence 59999999999998775 4445554 368999999999665543 333223444444332 267899999
Q ss_pred cChhHHHHhhHhhhcCC
Q 006386 444 RMHEHIMNWSSKQLYNS 460 (647)
Q Consensus 444 Rm~~~I~~~~s~~fY~~ 460 (647)
|+++.|.+++|.+|-..
T Consensus 448 RS~~~Il~~~N~lf~~~ 464 (1180)
T 1w36_B 448 RSAPGMVNSVNKLFSQT 464 (1180)
T ss_dssp TSCHHHHHHHHHHHHSS
T ss_pred CCcHHHHHHHHHHHhcc
Confidence 99999999999988653
No 14
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=99.61 E-value=8.6e-16 Score=143.74 Aligned_cols=142 Identities=15% Similarity=0.098 Sum_probs=98.2
Q ss_pred hHhhcChhHHHHhhHhhhcCCCCCCChhhhhcccccccCCcCCCCCCCcEEEEEecCCCccccccCCCCccCHHHHHHHH
Q 006386 440 TVQYRMHEHIMNWSSKQLYNSKIKAHPSVAAHMLFDLEGVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAM 519 (647)
Q Consensus 440 ~~qyRm~~~I~~~~s~~fY~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~d~~~~~~~~~~~~~~s~~N~~Ea~~v~ 519 (647)
++|||++++|++++|.++.++.-. . + . .. .+.++.++...+ ..+|+..|.
T Consensus 2 ~~NYRSt~~Il~~An~li~~~~~~-----~-------~-~--~~-~G~~p~~~~~~~--------------~~~e~~~i~ 51 (174)
T 3dmn_A 2 NASYRSTQQITDFTKEILVNGEAV-----T-------A-F--DR-QGDLPNVVVTPN--------------FEAGVDQVV 51 (174)
T ss_dssp -CCCCCCHHHHHHHHTTSCC-----------------------C-CCCCCEEEEESS--------------HHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHhcCCCcc-----c-------C-C--CC-CCCCCEEEEeCC--------------HHHHHHHHH
Confidence 579999999999999887654210 0 0 0 00 112222322221 136888899
Q ss_pred HHHHHHHHcCCCCCeEEEEcccHHHHHHHHHHHhcC------------CCCCCeEEccCCCCCCccccEEEEEEeecCCC
Q 006386 520 AHAKRLIQSGVHASDIGIITPYAAQVVLLKILRSKD------------DKLKNMEVSTVDGFQGREKEAIIISMVRSNSK 587 (647)
Q Consensus 520 ~~v~~l~~~g~~~~~I~IItpy~~Q~~~l~~l~~~~------------~~~~~i~v~Tvd~fQG~E~diVIis~vrs~~~ 587 (647)
+.+.. ...| .++||||++.+.|...+.+.+... ....+|.|+|+|.+||+|+|.||+..+.....
T Consensus 52 ~~I~~-~~~g--~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~~~~~~v~v~t~~~~KGlEf~~V~~~~~~~~~~ 128 (174)
T 3dmn_A 52 DQLAM-NDSE--RDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQRLAPGVIVVPSFLAKGLEFDAVIVWNANQENY 128 (174)
T ss_dssp HHHHH-HHHT--TCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-CCCSSEEEEEGGGCTTCCEEEEEEETCBTTTS
T ss_pred HHHHH-hccC--CCcEEEEecCHHHHHHHHHHHHHcCCcceeecccccccCCCeEEEEccccCCcCCCEEEEecCCcccC
Confidence 88888 5555 689999999999999988654321 11257999999999999999999986543321
Q ss_pred CccccCCCCCceeeeecccccceEEEecCC
Q 006386 588 KEVGFLSDRRRMNVAVTRARRQCCLVCDTE 617 (647)
Q Consensus 588 ~~~gfl~d~rrlnVAlTRAk~~l~ivG~~~ 617 (647)
....++|+||||+||||+.|+|++...
T Consensus 129 ---~~~~~~~llYva~TRA~~~l~~~~~~~ 155 (174)
T 3dmn_A 129 ---QREDERQLLYTICSRAMHELTLVAVGS 155 (174)
T ss_dssp ---CSGGGHHHHHHHHTTEEEEEEEEEESS
T ss_pred ---CChhhhceeEEEecCcccEEEEEeCCC
Confidence 124567889999999999999998643
No 15
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=99.50 E-value=2.2e-13 Score=164.18 Aligned_cols=145 Identities=12% Similarity=0.064 Sum_probs=94.4
Q ss_pred CEEEEecCCCcchHH--HHHHHHh-cCeee--ecCC--------CCCCCceeccHHHHhcCCCCCHHHHHHHH--cCCcc
Q 006386 371 DLVIIDEAAQALEIA--CWIALLK-GSRCI--LAGD--------HLQLPPTVQSVEAEKKGLGRTLFERLADL--YGDEV 435 (647)
Q Consensus 371 d~vIIDEAsq~~e~~--~l~~l~~-~~~~v--lvGD--------~~QL~p~v~s~~~~~~g~~~Slf~rl~~~--~~~~~ 435 (647)
++|+|||+|+++..+ ++..|.. +.++. +||| ++|-...+. |.....+.++... ++...
T Consensus 203 ~~IlVDEfQD~~~~Q~~ll~~L~~~~~~~~v~lvGD~~~~~~~~~~QsIY~~r-------ga~~~~l~~~~~~~~~~~~~ 275 (1166)
T 3u4q_B 203 AHIYVDGFYQFTPQEFRVLEQLMVHAEHITFSLTADKPSYEREPHELELFRMT-------GKTYYRLHQKAKELNLDITY 275 (1166)
T ss_dssp CEEEECSCSCCCHHHHHHHHHHHHHCSEEEEEEECSSCCSSSCCCTTCTTHHH-------HHHHHHHHHHHHHTTCCEEE
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEEeCcccccCCCCCCCcchhH-------HHHHHHHHHHHHHcCCCccc
Confidence 899999999998875 4444543 35544 6799 566333221 2222345555555 44444
Q ss_pred cchhhHhhcChhHHHHhhHhhhcCCCCCCChhhhhcccccccCCcCCCCCCCcEEEEEecCCCccccccCCCCccCHHHH
Q 006386 436 TSMLTVQYRMHEHIMNWSSKQLYNSKIKAHPSVAAHMLFDLEGVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEA 515 (647)
Q Consensus 436 ~~~L~~qyRm~~~I~~~~s~~fY~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~d~~~~~~~~~~~~~~s~~N~~Ea 515 (647)
.+.|+.|||+++.|..+.++.+...... .......++.++...+ ...|+
T Consensus 276 ~~~L~~nyRs~~~il~~i~~~~~~~~~~-----------------~~~~~~~~i~i~~~~~--------------~~~Ea 324 (1166)
T 3u4q_B 276 KELSGTERHTKTPELAHLEAQYEARPAI-----------------PYAEKQEALTVMQAAN--------------RRAEL 324 (1166)
T ss_dssp EEECSCSTTTTCHHHHHHHHSSSCSSCC-----------------CCCSCCSSEEEEEESS--------------HHHHH
T ss_pred ceecCCCCCCCCHHHHHHHHhHhhcCCC-----------------ccCCCCCCeEEEEcCC--------------hHHHH
Confidence 6789999999999998887654321000 0001223344443322 23789
Q ss_pred HHHHHHHHHHHH-cCCCCCeEEEEcccH-HHHHHHHHHHh
Q 006386 516 EVAMAHAKRLIQ-SGVHASDIGIITPYA-AQVVLLKILRS 553 (647)
Q Consensus 516 ~~v~~~v~~l~~-~g~~~~~I~IItpy~-~Q~~~l~~l~~ 553 (647)
+.|+..|..++. .|+++++|+||++.+ .|...+...+.
T Consensus 325 ~~ia~~I~~l~~~~g~~~~diAVL~R~~~~~~~~i~~~L~ 364 (1166)
T 3u4q_B 325 EGIAREIHALVREKGYRYKDVAILARQPEDYKDMVKEVFA 364 (1166)
T ss_dssp HHHHHHHHHHHHTSCCCGGGEEEEESCGGGTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCChhheEEEeCChHHHHHHHHHHHH
Confidence 999999999988 789999999999998 58888886553
No 16
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.93 E-value=7.1e-09 Score=101.78 Aligned_cols=74 Identities=19% Similarity=0.174 Sum_probs=61.2
Q ss_pred CCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHHHHHhcccCce-EEEeC
Q 006386 194 NSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVR-LVRLG 271 (647)
Q Consensus 194 ~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~~~~~~-~vr~g 271 (647)
...|++.|.+|+..++. .+-.+|.||+|+|||.++...+..+ +.++|+++|+...++++.+.+.+.+.. +..+.
T Consensus 91 ~~~l~~~Q~~ai~~~~~-~~~~ll~~~tG~GKT~~a~~~~~~~---~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~ 165 (237)
T 2fz4_A 91 EISLRDYQEKALERWLV-DKRGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGIFGEEYVGEFS 165 (237)
T ss_dssp CCCCCHHHHHHHHHHTT-TSEEEEEESSSTTHHHHHHHHHHHS---CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEES
T ss_pred CCCcCHHHHHHHHHHHh-CCCEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEe
Confidence 45799999999999887 4569999999999999987777654 789999999999999999998876554 44443
No 17
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=98.92 E-value=2.8e-09 Score=102.78 Aligned_cols=67 Identities=19% Similarity=0.288 Sum_probs=55.8
Q ss_pred CCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHC------CCeEEEeccchHHHHH-HHHHhc
Q 006386 194 NSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKR------GSKILACAASNIAVDN-IVERLV 261 (647)
Q Consensus 194 ~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~------~~~ILv~a~tn~Avd~-l~~rl~ 261 (647)
...|++.|.+|+..++. ....+|.+|+|||||.++...+..++.. +.++|+++|+...++. +.+.+.
T Consensus 31 ~~~l~~~Q~~~i~~~~~-~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~ 104 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPALE-GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQ 104 (216)
T ss_dssp CCCCCHHHHHHHHHHHT-TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHH
T ss_pred CCCchHHHHHHHHHHhc-CCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHH
Confidence 45799999999999987 5678999999999999998888776543 6799999999999888 544443
No 18
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=98.86 E-value=1.4e-08 Score=97.23 Aligned_cols=68 Identities=19% Similarity=0.192 Sum_probs=56.7
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH------CCCeEEEeccchHHHHHHHHHhccc
Q 006386 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK------RGSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~------~~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
..+++.|.+++..++. ....+|.+|+|||||.+....+...+. .+.++|+++||...+.++.+++.+.
T Consensus 22 ~~~~~~Q~~~i~~~~~-~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 95 (207)
T 2gxq_A 22 TTPTPIQAAALPLALE-GKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAV 95 (207)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcC-CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHH
Confidence 4689999999999987 567999999999999986665555542 4678999999999999999888765
No 19
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=98.78 E-value=4.3e-08 Score=96.05 Aligned_cols=68 Identities=21% Similarity=0.207 Sum_probs=56.1
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHH-------HCCCeEEEeccchHHHHHHHHHhccc
Q 006386 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEV-------KRGSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~-------~~~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
..+++.|.+|+..++. ...++|.+|.|||||.+....+...+ ..+.++|+++||...+..+.+++.+.
T Consensus 46 ~~~~~~Q~~~i~~~~~-~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 120 (236)
T 2pl3_A 46 RLVTEIQKQTIGLALQ-GKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKV 120 (236)
T ss_dssp CBCCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 4689999999999887 56789999999999998665554443 24679999999999999998887654
No 20
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=98.76 E-value=2.8e-08 Score=96.47 Aligned_cols=68 Identities=21% Similarity=0.203 Sum_probs=54.2
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHH---HCCCeEEEeccchHHHHHHHHHhccc
Q 006386 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEV---KRGSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~---~~~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
..+++.|.+|+..++. ...++|.+|+|||||.+..-.+.+.+ ..+.++|+++||...+..+.+.+.+.
T Consensus 35 ~~~~~~Q~~~i~~~~~-~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (224)
T 1qde_A 35 EEPSAIQQRAIMPIIE-GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMAL 105 (224)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhc-CCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHH
Confidence 4689999999999887 56799999999999988544444333 23569999999999999988877653
No 21
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=98.75 E-value=4.3e-08 Score=95.48 Aligned_cols=68 Identities=15% Similarity=0.086 Sum_probs=55.0
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH---------CCCeEEEeccchHHHHHHHHHhccc
Q 006386 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK---------RGSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~---------~~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
..+++.|.+|+..++. ..-+++.+|.|||||.+..-.+...+. .+.++|+++||...+..+.+++.+.
T Consensus 41 ~~~~~~Q~~~i~~~~~-~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 117 (228)
T 3iuy_A 41 LKPTPIQSQAWPIILQ-GIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKY 117 (228)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHh
Confidence 4689999999999887 567899999999999875544443332 5678999999999999998887664
No 22
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=98.75 E-value=5.3e-08 Score=93.10 Aligned_cols=68 Identities=15% Similarity=0.181 Sum_probs=54.8
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH---CCCeEEEeccchHHHHHHHHHhccc
Q 006386 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK---RGSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~---~~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
..+++.|.+|+..++. ...++|.+|+|||||.+....+...+. .+.++|+++||...+..+.+++.+.
T Consensus 24 ~~~~~~Q~~~i~~~~~-~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 94 (206)
T 1vec_A 24 EKPSPIQEESIPIALS-GRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQV 94 (206)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcc-CCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHH
Confidence 4689999999999887 567899999999999876655554432 3568999999999999988877543
No 23
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=98.75 E-value=2.8e-08 Score=100.32 Aligned_cols=68 Identities=18% Similarity=0.188 Sum_probs=58.9
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHCCC-eEEEeccchHHHHHHHHHhccc
Q 006386 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGS-KILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~-~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
..|++.|.+|+..++. .+-.+|.+|+|||||.++...+..++..+. ++|+++||+..+++..+++.+.
T Consensus 112 ~~l~~~Q~~ai~~~l~-~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~ 180 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLV-NRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDY 180 (282)
T ss_dssp CCCCHHHHHHHHHHHH-HSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHh-cCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHh
Confidence 3789999999999887 466789999999999999888887776654 9999999999999999888765
No 24
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=98.74 E-value=5.4e-08 Score=101.66 Aligned_cols=69 Identities=13% Similarity=0.186 Sum_probs=59.0
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHC--CCeEEEeccchHHHHHHHHHhccc
Q 006386 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKR--GSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~--~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
..+++.|++|+..++......++.+|+|||||.+....+..++.. +.++|+++||...++++.+++.+.
T Consensus 27 ~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 97 (367)
T 1hv8_A 27 EKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESL 97 (367)
T ss_dssp CSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHH
Confidence 368999999999999744689999999999999887777776543 679999999999999999888654
No 25
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=98.72 E-value=8.7e-08 Score=92.69 Aligned_cols=68 Identities=18% Similarity=0.197 Sum_probs=56.0
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHC---CCeEEEeccchHHHHHHHHHhccc
Q 006386 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKR---GSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~---~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
..+++.|.+|+..++. ..-.+|.+|+|||||.+....+...+.. +.++|+++||...++++.+.+.+.
T Consensus 35 ~~~~~~Q~~~i~~~~~-~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (220)
T 1t6n_A 35 EHPSEVQHECIPQAIL-GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERF 105 (220)
T ss_dssp CCCCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHH
Confidence 3589999999999987 5569999999999998877766665543 358999999999999988876553
No 26
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=98.70 E-value=1.2e-07 Score=93.64 Aligned_cols=68 Identities=21% Similarity=0.137 Sum_probs=54.8
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHH-HHHC--CCeEEEeccchHHHHHHHHHhccc
Q 006386 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQ-EVKR--GSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~-l~~~--~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
..+++.|.+|+..++. ...+++.+|.|||||.+....+.. +... +.++|+++||...+..+.+++.+.
T Consensus 64 ~~~~~~Q~~~i~~i~~-~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~ 134 (249)
T 3ber_A 64 TKPTKIQIEAIPLALQ-GRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEAL 134 (249)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 4689999999999887 567899999999999886555544 4443 457999999999999998877554
No 27
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=98.68 E-value=4.8e-08 Score=95.84 Aligned_cols=68 Identities=22% Similarity=0.272 Sum_probs=55.8
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH---CCCeEEEeccchHHHHHHHHHhccc
Q 006386 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK---RGSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~---~~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
..+++.|.+|+..++. ...++|.+|+|||||.+....+...+. .+.++|+++||...+..+.+.+.+.
T Consensus 51 ~~~~~~Q~~ai~~i~~-~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 121 (237)
T 3bor_A 51 EKPSAIQQRAIIPCIK-GYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILAL 121 (237)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHH
Confidence 3589999999999987 567899999999999886655555443 4579999999999999998887654
No 28
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=98.68 E-value=1.6e-07 Score=92.41 Aligned_cols=68 Identities=16% Similarity=0.117 Sum_probs=54.3
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH--------CCCeEEEeccchHHHHHHHHHhccc
Q 006386 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK--------RGSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~--------~~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
..+++.|.+|+..++. ..-+++.+|.|||||.+..-.+...+. .+.++|+++||...+..+.+.+.+.
T Consensus 50 ~~~~~~Q~~~i~~~~~-g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 125 (242)
T 3fe2_A 50 TEPTAIQAQGWPVALS-GLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEY 125 (242)
T ss_dssp CSCCHHHHHHHHHHHH-TCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHH
Confidence 4689999999999887 567899999999999885544444332 3678999999999999988776553
No 29
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=98.65 E-value=1.8e-07 Score=92.63 Aligned_cols=68 Identities=22% Similarity=0.190 Sum_probs=55.2
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHC------------CCeEEEeccchHHHHHHHHHhcc
Q 006386 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKR------------GSKILACAASNIAVDNIVERLVP 262 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~------------~~~ILv~a~tn~Avd~l~~rl~~ 262 (647)
..+++-|.+|+..++. ..-+++.+|.|||||.+....+...+.. +.++|+++||...+..+.+++.+
T Consensus 44 ~~~~~~Q~~~i~~i~~-~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 122 (253)
T 1wrb_A 44 QRPTPIQKNAIPAILE-HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQK 122 (253)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHH
Confidence 4689999999999987 5678999999999998766555554432 35899999999999999888765
Q ss_pred c
Q 006386 263 H 263 (647)
Q Consensus 263 ~ 263 (647)
.
T Consensus 123 ~ 123 (253)
T 1wrb_A 123 F 123 (253)
T ss_dssp H
T ss_pred H
Confidence 4
No 30
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=98.65 E-value=1.4e-07 Score=94.04 Aligned_cols=68 Identities=18% Similarity=0.223 Sum_probs=55.4
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHH-H------CCCeEEEeccchHHHHHHHHHhccc
Q 006386 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEV-K------RGSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~-~------~~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
..+++-|.+++..++. ..-++++||.|||||.+..-.+.+.+ + .+.++|+++||...+.++.+.+.+.
T Consensus 75 ~~~~~~Q~~~i~~~~~-~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 149 (262)
T 3ly5_A 75 TNMTEIQHKSIRPLLE-GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKEL 149 (262)
T ss_dssp CBCCHHHHHHHHHHHH-TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC-CCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 3589999999999987 45689999999999998655544433 3 4788999999999999998887654
No 31
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=98.65 E-value=1.1e-07 Score=101.41 Aligned_cols=67 Identities=24% Similarity=0.257 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHHHHHhccc
Q 006386 196 NLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 196 ~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
++++.|.+|+..++. ...++|++|.|||||.+....+..+...+.++|+++||...+.++.+++.+.
T Consensus 21 ~~~~~Q~~~i~~i~~-~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 87 (414)
T 3oiy_A 21 DLTGYQRLWAKRIVQ-GKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKL 87 (414)
T ss_dssp CCCHHHHHHHHHHTT-TCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc-CCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHH
Confidence 578999999999987 5578999999999999766666666778899999999999999999998773
No 32
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=98.63 E-value=1.4e-07 Score=91.98 Aligned_cols=68 Identities=21% Similarity=0.131 Sum_probs=54.3
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHH-HHHHH--CCCeEEEeccchHHHHHHHHHhccc
Q 006386 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEII-LQEVK--RGSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i-~~l~~--~~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
..+++-|.+++..++. ..-+++.+|.|||||.+..-.+ ..+.. .+.++|+++||...+..+.+++.+.
T Consensus 45 ~~~~~~Q~~~i~~~~~-~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 115 (230)
T 2oxc_A 45 ERPSPVQLKAIPLGRC-GLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAI 115 (230)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 3589999999999887 5678999999999998854444 33332 3579999999999999998887654
No 33
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=98.63 E-value=9.9e-08 Score=106.78 Aligned_cols=70 Identities=26% Similarity=0.281 Sum_probs=48.8
Q ss_pred CCCCHHHHHHHHHHHc----cCCeEEEEcCCCCchHHHHHHHHHHHHHC---------CCeEEEeccchHHHHHHH-HHh
Q 006386 195 SNLDHSQKDAISKALS----SKNVFMLHGPPGTGKTTTVVEIILQEVKR---------GSKILACAASNIAVDNIV-ERL 260 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~----~~~~~lI~GpPGTGKT~ti~~~i~~l~~~---------~~~ILv~a~tn~Avd~l~-~rl 260 (647)
..|.+.|.+||..++. ..+-.++.+|.|||||.++..++..++.. +.++|+++||+..+++.. +.+
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 4799999999998875 34667999999999999999999888774 489999999999999988 655
Q ss_pred cccC
Q 006386 261 VPHR 264 (647)
Q Consensus 261 ~~~~ 264 (647)
...+
T Consensus 257 ~~~~ 260 (590)
T 3h1t_A 257 TPFG 260 (590)
T ss_dssp TTTC
T ss_pred Hhcc
Confidence 5443
No 34
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=98.62 E-value=1.8e-07 Score=96.35 Aligned_cols=65 Identities=20% Similarity=0.264 Sum_probs=54.9
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHHHHHhccc
Q 006386 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
..|++.|++|+..++. ....+|.+|+|||||.+....+.. .+.++|+++|+...+.++.+++.+.
T Consensus 15 ~~l~~~Q~~~i~~i~~-~~~~lv~~~TGsGKT~~~~~~~~~---~~~~~liv~P~~~L~~q~~~~~~~~ 79 (337)
T 2z0m_A 15 KNFTEVQSKTIPLMLQ-GKNVVVRAKTGSGKTAAYAIPILE---LGMKSLVVTPTRELTRQVASHIRDI 79 (337)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEEECCTTSSHHHHHHHHHHH---HTCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc-CCCEEEEcCCCCcHHHHHHHHHHh---hcCCEEEEeCCHHHHHHHHHHHHHH
Confidence 4689999999999887 567999999999999876555443 4889999999999999999888653
No 35
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.62 E-value=1.2e-07 Score=102.93 Aligned_cols=73 Identities=19% Similarity=0.175 Sum_probs=61.9
Q ss_pred CCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHHHHHhcccCce-EEEe
Q 006386 194 NSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVR-LVRL 270 (647)
Q Consensus 194 ~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~~~~~~-~vr~ 270 (647)
...|++.|.+|+..++. .+-.+|.||.|+|||.+....+..+ +.++||++||...+.+..+++.+.+.. +..+
T Consensus 91 ~~~l~~~Q~~ai~~i~~-~~~~ll~~~TGsGKT~~~l~~i~~~---~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~ 164 (472)
T 2fwr_A 91 EISLRDYQEKALERWLV-DKRGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGIFGEEYVGEF 164 (472)
T ss_dssp CCCBCHHHHHHHHHHTT-TTEEEEECCTTSCHHHHHHHHHHHH---CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEB
T ss_pred CCCcCHHHHHHHHHHHh-cCCEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEECCHHHHHHHHHHHHhCCCcceEEE
Confidence 45799999999998887 4569999999999999988777665 789999999999999999999886555 4433
No 36
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=98.62 E-value=1.6e-07 Score=99.62 Aligned_cols=68 Identities=21% Similarity=0.191 Sum_probs=56.2
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH---CCCeEEEeccchHHHHHHHHHhccc
Q 006386 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK---RGSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~---~~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
..+++.|.+|+..++. ...++|.+|+|||||.+....+...+. .+.++|+++||...+..+.+++.+.
T Consensus 42 ~~~~~~Q~~~i~~i~~-~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 112 (400)
T 1s2m_A 42 EKPSPIQEEAIPVAIT-GRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTL 112 (400)
T ss_dssp CSCCHHHHHHHHHHHH-TCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc-CCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHH
Confidence 3689999999999987 456899999999999887666665544 3568999999999999988877654
No 37
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=98.59 E-value=3.3e-07 Score=99.29 Aligned_cols=67 Identities=21% Similarity=0.142 Sum_probs=58.4
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH-CCCeEEEeccchHHHHHHHHHhccc
Q 006386 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK-RGSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~-~~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
..|.+.|.+++..++. . -.+|.+|+|+|||.++...+..++. .+.++|+++||...+.+..+.+.+.
T Consensus 8 ~~l~~~Q~~~i~~~~~-~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~ 75 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKE-T-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRL 75 (494)
T ss_dssp HCCCHHHHHHHHHGGG-S-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHhh-C-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 3689999999999987 3 7899999999999998888877664 6889999999999999998887664
No 38
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=98.59 E-value=5.6e-08 Score=94.05 Aligned_cols=68 Identities=19% Similarity=0.204 Sum_probs=55.1
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH---CCCeEEEeccchHHHHHHHHHhccc
Q 006386 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK---RGSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~---~~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
..+++-|.+|+..++. ....++.+|.|||||.+....+...+. .+.++|+++||...+.++.+.+.+.
T Consensus 25 ~~~~~~Q~~~i~~~~~-~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 95 (219)
T 1q0u_A 25 YKPTEIQERIIPGALR-GESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKI 95 (219)
T ss_dssp CSCCHHHHHHHHHHHH-TCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHH
Confidence 4589999999999987 567899999999999986555555443 3568999999999999988876543
No 39
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=98.56 E-value=1.5e-07 Score=103.99 Aligned_cols=160 Identities=16% Similarity=0.197 Sum_probs=112.7
Q ss_pred CCCCCCHHHHHHHHHHHc-cCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHHHHHhcccCceEEEeC
Q 006386 193 FNSNLDHSQKDAISKALS-SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVRLVRLG 271 (647)
Q Consensus 193 ~~~~Ln~~Q~~Av~~~l~-~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~~~~~~~vr~g 271 (647)
....++.+|.+|+...+. ..+..+|.|++|+|||+++-..+..+. .+++|||||..|+..+.+-..+. ++.-
T Consensus 172 ~~~~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~---~~~~vtAP~~~a~~~l~~~~~~~----i~~~ 244 (671)
T 2zpa_A 172 ATGAPQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA---GRAIVTAPAKASTDVLAQFAGEK----FRFI 244 (671)
T ss_dssp CCSSCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS---SCEEEECSSCCSCHHHHHHHGGG----CCBC
T ss_pred CCCCCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH---hCcEEECCCHHHHHHHHHHhhCC----eEEe
Confidence 345789999999998876 346889999999999988777777664 35799999999999887754221 0000
Q ss_pred CCCCCChhHHhhhHHHHHhcCCCchhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 006386 272 HPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNAD 351 (647)
Q Consensus 272 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~ 351 (647)
.|. . ++
T Consensus 245 -----~Pd-------~----------------------------------------------------------~~---- 250 (671)
T 2zpa_A 245 -----APD-------A----------------------------------------------------------LL---- 250 (671)
T ss_dssp -----CHH-------H----------------------------------------------------------HH----
T ss_pred -----Cch-------h----------------------------------------------------------hh----
Confidence 000 0 00
Q ss_pred eeeeccccccccccCCCCCCEEEEecCCCcchHHHHHHHHh-cCeeeecCCCCCCCceeccHHHHhcCCCCCHHHHHHHH
Q 006386 352 VVLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIACWIALLK-GSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADL 430 (647)
Q Consensus 352 vi~~T~~~~~~~~l~~~~fd~vIIDEAsq~~e~~~l~~l~~-~~~~vlvGD~~QL~p~v~s~~~~~~g~~~Slf~rl~~~ 430 (647)
-.....|+||||||+.+.-| .+..++. ..+++++..-++.. |.+..+--++...
T Consensus 251 -------------~~~~~~dlliVDEAAaIp~p-ll~~ll~~~~~v~~~tTv~GYE-----------GtGrgf~lk~~~~ 305 (671)
T 2zpa_A 251 -------------ASDEQADWLVVDEAAAIPAP-LLHQLVSRFPRTLLTTTVQGYE-----------GTGRGFLLKFCAR 305 (671)
T ss_dssp -------------HSCCCCSEEEEETGGGSCHH-HHHHHHTTSSEEEEEEEBSSTT-----------BBCHHHHHHHHHT
T ss_pred -------------hCcccCCEEEEEchhcCCHH-HHHHHHhhCCeEEEEecCCcCC-----------CcCcccccccHhh
Confidence 00125799999999955444 4555554 47999999988844 4455555666666
Q ss_pred cCCcccchhhHhhcC--hhHHHHhhHhhhc
Q 006386 431 YGDEVTSMLTVQYRM--HEHIMNWSSKQLY 458 (647)
Q Consensus 431 ~~~~~~~~L~~qyRm--~~~I~~~~s~~fY 458 (647)
.+....+.|++-.|= +..|-.|.++.+-
T Consensus 306 L~~~~~~~L~~piR~a~~DplE~wl~~~ll 335 (671)
T 2zpa_A 306 FPHLHRFELQQPIRWAQGCPLEKMVSEALV 335 (671)
T ss_dssp STTCEEEECCSCSSSCTTCHHHHHHHHHHT
T ss_pred cCCCcEEEccCceecCCCCCHHHHHHHhhC
Confidence 666667889998887 6699999887775
No 40
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=98.56 E-value=1.2e-07 Score=104.24 Aligned_cols=68 Identities=18% Similarity=0.188 Sum_probs=60.0
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHCCC-eEEEeccchHHHHHHHHHhccc
Q 006386 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGS-KILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~-~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
..|++.|.+||..++. ..-.+|.||.|+|||.++...+..++..++ ++|+++||...+++..+++.+.
T Consensus 112 ~~l~~~Q~~ai~~~~~-~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~ 180 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLV-NRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDY 180 (510)
T ss_dssp ECCCHHHHHHHHHHHH-HSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHh-cCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHh
Confidence 4799999999999987 467899999999999999888888776665 9999999999999999988654
No 41
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=98.55 E-value=3.5e-07 Score=101.37 Aligned_cols=68 Identities=16% Similarity=0.191 Sum_probs=57.4
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHC-----CCeEEEeccchHHHHHHHHHhccc
Q 006386 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKR-----GSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~-----~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
.+|++-|.+|+..++. ..-++|.+|.|||||.+....+.+.+.. +.++|+++||...+.+..+.+.+.
T Consensus 6 ~~~~~~Q~~~i~~~~~-~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 78 (556)
T 4a2p_A 6 KKARSYQIELAQPAIN-GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHH 78 (556)
T ss_dssp --CCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc-CCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 4689999999999987 5668999999999999888877777665 779999999999999888877654
No 42
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=98.51 E-value=4.9e-07 Score=96.14 Aligned_cols=68 Identities=24% Similarity=0.254 Sum_probs=57.0
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH---CCCeEEEeccchHHHHHHHHHhccc
Q 006386 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK---RGSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~---~~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
..+++.|++|+..++. ..-+++.+|.|||||.+....+.+.+. .+.++|+++||...+.++.+.+.+.
T Consensus 58 ~~~~~~Q~~ai~~i~~-~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 128 (410)
T 2j0s_A 58 EKPSAIQQRAIKQIIK-GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLAL 128 (410)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHH
Confidence 3589999999999987 556899999999999887766666543 4679999999999999998887653
No 43
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=98.51 E-value=3.6e-07 Score=96.47 Aligned_cols=68 Identities=21% Similarity=0.214 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH---CCCeEEEeccchHHHHHHHHHhccc
Q 006386 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK---RGSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~---~~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
..+++.|++|+..++. ..-++|.+|+|||||.+....+...+. .+.++|+++||...+.++.+.+.+.
T Consensus 42 ~~~~~~Q~~~i~~i~~-~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 112 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIE-GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMAL 112 (394)
T ss_dssp CSCCHHHHHHHHHHHH-TCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHH
Confidence 4689999999999987 566899999999999886555554433 3579999999999999988877543
No 44
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=98.51 E-value=4.8e-07 Score=100.11 Aligned_cols=68 Identities=16% Similarity=0.115 Sum_probs=58.3
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHC-----CCeEEEeccchHHHHHHHHHhccc
Q 006386 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKR-----GSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~-----~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
.+|.+-|.+|+..++. ..-++|.+|.|+|||.+....+.+.+.. +.++|+++||...+.+..+.+.+.
T Consensus 3 ~~~~~~Q~~~i~~~~~-~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 75 (555)
T 3tbk_A 3 LKPRNYQLELALPAKK-GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRY 75 (555)
T ss_dssp CCCCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhC-CCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 3689999999999987 5678999999999999988888777665 779999999999998888877654
No 45
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=98.50 E-value=5.6e-07 Score=94.88 Aligned_cols=68 Identities=18% Similarity=0.197 Sum_probs=55.7
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH---CCCeEEEeccchHHHHHHHHHhccc
Q 006386 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK---RGSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~---~~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
..+++.|.+|+..++. ..-++|.+|+|+|||.+....+...+. .+.++|+++||...+.++.+.+.+.
T Consensus 29 ~~~~~~Q~~~i~~~~~-~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 99 (391)
T 1xti_A 29 EHPSEVQHECIPQAIL-GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERF 99 (391)
T ss_dssp CSCCHHHHHHHHHHTT-TCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc-CCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHH
Confidence 3589999999999887 567999999999999887666665543 2569999999999999988776553
No 46
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=98.50 E-value=2e-07 Score=91.81 Aligned_cols=68 Identities=24% Similarity=0.283 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH----CCCeEEEeccchHHHHHHHHHhccc
Q 006386 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK----RGSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~----~~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
..+++.|.+|+..++. ..-+++.+|.|||||.+....+...+. .+.++|+++||...+..+.+.+.+.
T Consensus 50 ~~~~~~Q~~~i~~~~~-~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 121 (245)
T 3dkp_A 50 QMPTPIQMQAIPVMLH-GRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKI 121 (245)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 4689999999999887 456899999999999986555544443 4568999999999999998887654
No 47
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=98.48 E-value=4.7e-07 Score=95.48 Aligned_cols=69 Identities=19% Similarity=0.224 Sum_probs=57.5
Q ss_pred CCCCHHHHHHHHHHHcc-CCeEEEEcCCCCchHHHHHHHHHHHHH---CCCeEEEeccchHHHHHHHHHhccc
Q 006386 195 SNLDHSQKDAISKALSS-KNVFMLHGPPGTGKTTTVVEIILQEVK---RGSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~-~~~~lI~GpPGTGKT~ti~~~i~~l~~---~~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
..+++.|.+|+..++.. ...++|++|.|||||.+....+...+. .+.++|+++||...+.++.+++.+.
T Consensus 26 ~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 98 (395)
T 3pey_A 26 QKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEM 98 (395)
T ss_dssp CSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHH
Confidence 46899999999999873 267899999999999987766666543 4679999999999999999887654
No 48
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=98.47 E-value=9.2e-07 Score=100.86 Aligned_cols=70 Identities=23% Similarity=0.210 Sum_probs=60.0
Q ss_pred CCCCCHHHHHHHHHHHcc-----CCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHHHHHhccc
Q 006386 194 NSNLDHSQKDAISKALSS-----KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 194 ~~~Ln~~Q~~Av~~~l~~-----~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
...|++.|++|+..++.. ....+|+||.|||||.+....+...+..|.++++++||...+....+++.+.
T Consensus 366 pf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~ 440 (780)
T 1gm5_A 366 PFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVES 440 (780)
T ss_dssp SSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 348999999999988762 1368999999999999998888888888999999999999999888877653
No 49
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=98.46 E-value=6.1e-07 Score=95.39 Aligned_cols=68 Identities=22% Similarity=0.277 Sum_probs=56.8
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH---CCCeEEEeccchHHHHHHHHHhccc
Q 006386 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK---RGSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~---~~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
..+++.|.+|+..++. ..-++|.+|.|||||.+....+...+. .+.++|+++||...+.++.+++.+.
T Consensus 61 ~~~~~~Q~~~i~~~~~-~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 131 (414)
T 3eiq_A 61 EKPSAIQQRAILPCIK-GYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMAL 131 (414)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHhHHHhC-CCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHH
Confidence 4689999999999987 556899999999999987666665543 4678999999999999998887654
No 50
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=98.45 E-value=9e-07 Score=94.23 Aligned_cols=68 Identities=25% Similarity=0.207 Sum_probs=53.7
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHH-HHHHHHHCC--------------------CeEEEeccchHHH
Q 006386 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVE-IILQEVKRG--------------------SKILACAASNIAV 253 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~-~i~~l~~~~--------------------~~ILv~a~tn~Av 253 (647)
..+++.|.+|+..++. ...++|.+|.|||||.+... ++..+...+ .++|+++||...+
T Consensus 36 ~~~~~~Q~~~i~~i~~-~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~ 114 (417)
T 2i4i_A 36 TRPTPVQKHAIPIIKE-KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELA 114 (417)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHH
T ss_pred CCCCHHHHHHHHHHcc-CCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHH
Confidence 4689999999998886 56789999999999986544 444443322 5799999999999
Q ss_pred HHHHHHhccc
Q 006386 254 DNIVERLVPH 263 (647)
Q Consensus 254 d~l~~rl~~~ 263 (647)
.++.+++.+.
T Consensus 115 ~q~~~~~~~~ 124 (417)
T 2i4i_A 115 VQIYEEARKF 124 (417)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887653
No 51
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=98.40 E-value=1e-06 Score=102.01 Aligned_cols=69 Identities=16% Similarity=0.191 Sum_probs=58.2
Q ss_pred CCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHC-----CCeEEEeccchHHHHHHHHHhccc
Q 006386 194 NSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKR-----GSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 194 ~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~-----~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
...|.+-|.+|+..++. ..-++|.+|.|||||.+....+...+.. +.++||++||...+.+..+.+.+.
T Consensus 246 ~~~l~~~Q~~~i~~~l~-~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~ 319 (797)
T 4a2q_A 246 TKKARSYQIELAQPAIN-GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHH 319 (797)
T ss_dssp --CCCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh-CCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 35789999999999987 5678999999999999988888777665 789999999999999888777654
No 52
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=98.40 E-value=7.5e-07 Score=101.98 Aligned_cols=68 Identities=24% Similarity=0.309 Sum_probs=57.5
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHH-HHCCCeEEEeccchHHHHHHHHHhcc
Q 006386 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQE-VKRGSKILACAASNIAVDNIVERLVP 262 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l-~~~~~~ILv~a~tn~Avd~l~~rl~~ 262 (647)
..|++.|.+|+..++..+..++|.||.|||||+++...+... ...+.++++++|+.+.+.+..+++..
T Consensus 29 ~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~ 97 (715)
T 2va8_A 29 KKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKD 97 (715)
T ss_dssp CBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHH
Confidence 479999999999855557899999999999999986666544 44789999999999999999998843
No 53
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=98.37 E-value=1.2e-06 Score=103.17 Aligned_cols=71 Identities=14% Similarity=0.131 Sum_probs=63.5
Q ss_pred CCCCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHHHHHhccc
Q 006386 192 PFNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 192 ~~~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
.+...|++.|.+||..++. ...++|.||.|||||.+....+..+...+.++|+++|+...+....+++.+.
T Consensus 35 ~~~f~l~~~Q~~aI~~il~-g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~ 105 (997)
T 4a4z_A 35 SWPFELDTFQKEAVYHLEQ-GDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKET 105 (997)
T ss_dssp CCSSCCCHHHHHHHHHHHT-TCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTT
T ss_pred hCCCCCCHHHHHHHHHHHc-CCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 3556799999999999887 6789999999999999888888888888999999999999999999999875
No 54
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=98.36 E-value=4.8e-07 Score=103.39 Aligned_cols=68 Identities=21% Similarity=0.318 Sum_probs=57.7
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHCC------CeEEEeccchHHHHHH-HHHhccc
Q 006386 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRG------SKILACAASNIAVDNI-VERLVPH 263 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~------~~ILv~a~tn~Avd~l-~~rl~~~ 263 (647)
..|.+.|.+|+..++. ..-++|.+|.|+|||.+....+..++..+ .++||++|+...+.+. .+.+.+.
T Consensus 6 ~~l~~~Q~~~i~~il~-g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~ 80 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALE-GKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPF 80 (699)
T ss_dssp -CCCHHHHHHHHHHHS-SCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHH
T ss_pred CCccHHHHHHHHHHHh-CCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 4689999999999997 56799999999999999888887765432 7999999999998888 8877664
No 55
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=98.36 E-value=8.6e-07 Score=105.29 Aligned_cols=71 Identities=18% Similarity=0.199 Sum_probs=63.2
Q ss_pred CCCCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHHHHHhccc
Q 006386 192 PFNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 192 ~~~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
.+...|++.|.+|+..++. ...++|.||.|||||.+....+...+..+.++|+++||...+....+++.+.
T Consensus 180 ~~~f~ltp~Q~~AI~~i~~-g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~ 250 (1108)
T 3l9o_A 180 TYPFTLDPFQDTAISCIDR-GESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAE 250 (1108)
T ss_dssp CCSSCCCHHHHHHHHHHTT-TCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHc-CCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 3456799999999999776 6778999999999999988888888889999999999999999999988764
No 56
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=98.35 E-value=8.1e-07 Score=101.77 Aligned_cols=68 Identities=12% Similarity=0.170 Sum_probs=56.5
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHH-HHHHHHCCCeEEEeccchHHHHHHHHHhcc
Q 006386 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEI-ILQEVKRGSKILACAASNIAVDNIVERLVP 262 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~-i~~l~~~~~~ILv~a~tn~Avd~l~~rl~~ 262 (647)
..|++.|.+++..++..+..++|.||.|||||.++.-. +..+...+.++++++|+.+++.+..+++..
T Consensus 22 ~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~ 90 (720)
T 2zj8_A 22 ESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQD 90 (720)
T ss_dssp CBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGG
T ss_pred CCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHH
Confidence 36899999999984444789999999999999987444 444455789999999999999999999854
No 57
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=98.35 E-value=1.3e-06 Score=102.91 Aligned_cols=70 Identities=19% Similarity=0.201 Sum_probs=61.5
Q ss_pred CCCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHHHHHhccc
Q 006386 193 FNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 193 ~~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
+...|++.|.+|+..++. ...++|.+|.|+|||.+....+...+..|.++|+++||.+.+.+..+.+.+.
T Consensus 83 ~~f~L~~~Q~eai~~l~~-g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~ 152 (1010)
T 2xgj_A 83 YPFTLDPFQDTAISCIDR-GESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAE 152 (1010)
T ss_dssp CSSCCCHHHHHHHHHHHH-TCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHc-CCCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHH
Confidence 455699999999999886 6789999999999999987777777888999999999999999988887654
No 58
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=98.34 E-value=2.1e-06 Score=98.06 Aligned_cols=68 Identities=16% Similarity=0.106 Sum_probs=56.2
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHCC-----CeEEEeccchHHHHHHHHHhccc
Q 006386 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRG-----SKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~-----~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
..|.+-|.+++..++. ...++|.+|.|+|||.+....+...+..+ .++|+++||...+.+..+.+.+.
T Consensus 12 ~~lr~~Q~~~i~~~l~-g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~ 84 (696)
T 2ykg_A 12 FKPRNYQLELALPAMK-GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKY 84 (696)
T ss_dssp -CCCHHHHHHHHHHHT-TCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHc-CCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 4689999999999987 56799999999999998887777665432 68999999999888887776554
No 59
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=98.34 E-value=2.5e-06 Score=91.54 Aligned_cols=68 Identities=16% Similarity=0.139 Sum_probs=54.8
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHH-HHHHHHHC-------CCeEEEeccchHHHHHHHHHhccc
Q 006386 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVE-IILQEVKR-------GSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~-~i~~l~~~-------~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
..+++-|++|+..++. ..-+++++|.|||||.+..- ++..+... +.++|+++||...+.++.+.+.+.
T Consensus 77 ~~pt~iQ~~ai~~i~~-g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 152 (434)
T 2db3_A 77 KIPTPIQKCSIPVISS-GRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKF 152 (434)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc-CCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHH
Confidence 3589999999999887 66789999999999986544 44455443 458999999999999998877654
No 60
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=98.32 E-value=1.3e-06 Score=92.73 Aligned_cols=69 Identities=17% Similarity=0.190 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHHHHHcc-CCeEEEEcCCCCchHHHHHHHHHHHHHC---CCeEEEeccchHHHHHHHHHhccc
Q 006386 195 SNLDHSQKDAISKALSS-KNVFMLHGPPGTGKTTTVVEIILQEVKR---GSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~-~~~~lI~GpPGTGKT~ti~~~i~~l~~~---~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
..+++.|.+|+..++.. ...++|.+|.|||||.+....+...+.. +.++|+++||...+..+.+++.+.
T Consensus 46 ~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 118 (412)
T 3fht_A 46 NRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQM 118 (412)
T ss_dssp CSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHH
Confidence 46899999999999973 3689999999999999865555544432 348999999999999997776553
No 61
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=98.32 E-value=2.1e-06 Score=101.97 Aligned_cols=67 Identities=24% Similarity=0.257 Sum_probs=60.3
Q ss_pred CCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHHHHHhccc
Q 006386 196 NLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 196 ~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
.+++-|.+|+..++. ..-+++++|.|||||.+....+..++..+.++|+++||...+.++.+++.+.
T Consensus 78 ~pt~iQ~~ai~~il~-g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 78 DLTGYQRLWAKRIVQ-GKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp CCCHHHHHHHHHHTT-TCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHc-CCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHh
Confidence 689999999999987 5678999999999999777777777788999999999999999999999874
No 62
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=98.30 E-value=7.8e-06 Score=97.68 Aligned_cols=70 Identities=17% Similarity=0.211 Sum_probs=59.2
Q ss_pred CCCCCCHHHHHHHHHHHcc---CC--eEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHHHHHhcc
Q 006386 193 FNSNLDHSQKDAISKALSS---KN--VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVP 262 (647)
Q Consensus 193 ~~~~Ln~~Q~~Av~~~l~~---~~--~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~~ 262 (647)
+...+++.|.+|+..++.. .. -.+|+||.|+|||.++...+..++..|.++|+++||...+....+++.+
T Consensus 600 f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~ 674 (1151)
T 2eyq_A 600 FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRD 674 (1151)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHH
Confidence 4556899999999988861 22 6899999999999998877777788899999999999999888877754
No 63
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.29 E-value=3.1e-06 Score=82.71 Aligned_cols=66 Identities=21% Similarity=0.414 Sum_probs=53.6
Q ss_pred CCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHH-HHCCC----eEEEeccchHHHHHHHHHhcc
Q 006386 196 NLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQE-VKRGS----KILACAASNIAVDNIVERLVP 262 (647)
Q Consensus 196 ~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l-~~~~~----~ILv~a~tn~Avd~l~~rl~~ 262 (647)
.+.+.|.+++..+.. ...++|.||.|||||+.+...+... ...+. ++++++|+...+..+.+++..
T Consensus 61 p~~~~q~~~i~~i~~-g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~ 131 (235)
T 3llm_A 61 PVKKFESEILEAISQ-NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAF 131 (235)
T ss_dssp GGGGGHHHHHHHHHH-CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhc-CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHH
Confidence 367789999998876 7889999999999999877666553 34443 899999999999999888754
No 64
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=98.29 E-value=7.7e-07 Score=101.62 Aligned_cols=67 Identities=22% Similarity=0.260 Sum_probs=57.8
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHHHHHhcc
Q 006386 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVP 262 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~~ 262 (647)
..|++.|.+++...+. +..++|.||.|||||+++...+...+..+.++++++|+.+.+.+..+++..
T Consensus 24 ~~l~~~Q~~~i~~i~~-~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~~ 90 (702)
T 2p6r_A 24 EELFPPQAEAVEKVFS-GKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKK 90 (702)
T ss_dssp -CCCCCCHHHHHHHTT-CSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhC-CCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHHH
Confidence 3689999999999665 778999999999999998777766666788999999999999999998843
No 65
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=98.28 E-value=5.5e-07 Score=98.72 Aligned_cols=68 Identities=21% Similarity=0.252 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHHcc-CCeEEEEcCCCCchHHHHHHHHHHHHHC---CCeEEEeccchHHHHHHHHHhccc
Q 006386 196 NLDHSQKDAISKALSS-KNVFMLHGPPGTGKTTTVVEIILQEVKR---GSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 196 ~Ln~~Q~~Av~~~l~~-~~~~lI~GpPGTGKT~ti~~~i~~l~~~---~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
.+++.|.+|+..++.. ...++|.+|.|||||.+....+...+.. +.++|+++|++..++++.+++.+.
T Consensus 141 ~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~ 212 (508)
T 3fho_A 141 XXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEM 212 (508)
T ss_dssp ECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHh
Confidence 5889999999999874 3789999999999999876666665443 358999999999999999988664
No 66
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=98.27 E-value=1.6e-06 Score=101.72 Aligned_cols=68 Identities=16% Similarity=0.191 Sum_probs=57.5
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHC-----CCeEEEeccchHHHHHHHHHhccc
Q 006386 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKR-----GSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~-----~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
..|.+-|.+|+..++. ..-.+|.+|.|+|||.+....+...+.. +.++||++||...+.+..+.+.+.
T Consensus 247 ~~~r~~Q~~ai~~il~-g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~ 319 (936)
T 4a2w_A 247 KKARSYQIELAQPAIN-GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHH 319 (936)
T ss_dssp -CCCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc-CCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 4689999999999987 5678999999999999888777776654 779999999999999888777654
No 67
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=98.23 E-value=2.6e-06 Score=86.55 Aligned_cols=69 Identities=16% Similarity=0.153 Sum_probs=52.7
Q ss_pred CCCCHHHHHHHHHHHcc-CCeEEEEcCCCCchHHHHH-HHHHHHHHC--CCeEEEeccchHHHHHHHHHhccc
Q 006386 195 SNLDHSQKDAISKALSS-KNVFMLHGPPGTGKTTTVV-EIILQEVKR--GSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~-~~~~lI~GpPGTGKT~ti~-~~i~~l~~~--~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
..+++-|.+|+..++.. ...+++++|.|||||.+.. .++..+... +.++|+++||...+..+...+...
T Consensus 113 ~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l 185 (300)
T 3fmo_B 113 NRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQM 185 (300)
T ss_dssp CSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHH
Confidence 46899999999998873 2679999999999998754 344333332 347999999999999987766543
No 68
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=98.22 E-value=6.1e-06 Score=75.15 Aligned_cols=63 Identities=16% Similarity=0.220 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHc-cCCeEEEEcCCCCchHHHHHH-HHHHHHHCCCeEEEeccchHHHHHHHHHh
Q 006386 198 DHSQKDAISKALS-SKNVFMLHGPPGTGKTTTVVE-IILQEVKRGSKILACAASNIAVDNIVERL 260 (647)
Q Consensus 198 n~~Q~~Av~~~l~-~~~~~lI~GpPGTGKT~ti~~-~i~~l~~~~~~ILv~a~tn~Avd~l~~rl 260 (647)
+..|..|+...+. .+++.+|+|+.||+||++.++ ++...-..|++|.++||+..+...+.+.+
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~s~~~l~~~~ 100 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMNMKQDE 100 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTTHHHHHHSCTT
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCchHHHHHHHhhc
Confidence 4789999998876 567999999999999998544 44444567999999999999999988764
No 69
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=98.19 E-value=6.9e-06 Score=91.18 Aligned_cols=68 Identities=24% Similarity=0.222 Sum_probs=54.4
Q ss_pred CCCCHHHHHHHHHHHcc-CCeEEEEcCCCCchHHHHHHHHHHHHHCC-------CeEEEeccchHHHHHHHHHhcc
Q 006386 195 SNLDHSQKDAISKALSS-KNVFMLHGPPGTGKTTTVVEIILQEVKRG-------SKILACAASNIAVDNIVERLVP 262 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~-~~~~lI~GpPGTGKT~ti~~~i~~l~~~~-------~~ILv~a~tn~Avd~l~~rl~~ 262 (647)
..+++.|.+|+..++.. ..-+++.+|.|||||.+..-.+.+.+..+ .++|+++||...+.++.+.+.+
T Consensus 93 ~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~ 168 (563)
T 3i5x_A 93 PGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKK 168 (563)
T ss_dssp SSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHH
Confidence 45899999999999852 45789999999999987655555444332 4899999999999999888765
No 70
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=98.18 E-value=2.4e-06 Score=92.91 Aligned_cols=68 Identities=18% Similarity=0.221 Sum_probs=53.7
Q ss_pred CCCCHHHHHHHHHHHcc-CCeEEEEcCCCCchHHHHHHHHHHHHHCC---CeEEEeccchHHHHHHHHHhcc
Q 006386 195 SNLDHSQKDAISKALSS-KNVFMLHGPPGTGKTTTVVEIILQEVKRG---SKILACAASNIAVDNIVERLVP 262 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~-~~~~lI~GpPGTGKT~ti~~~i~~l~~~~---~~ILv~a~tn~Avd~l~~rl~~ 262 (647)
..+++-|.+|+..++.. ...++++||.|||||.+....+...+..+ .++|+++||...+..+.+.+.+
T Consensus 113 ~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 184 (479)
T 3fmp_B 113 NRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQ 184 (479)
T ss_dssp CSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHH
Confidence 45788899999999873 37899999999999988655555444433 3899999999999998766554
No 71
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=98.18 E-value=7.3e-06 Score=91.31 Aligned_cols=68 Identities=24% Similarity=0.211 Sum_probs=54.3
Q ss_pred CCCCHHHHHHHHHHHcc-CCeEEEEcCCCCchHHHHHHHHHHHHHC-------CCeEEEeccchHHHHHHHHHhcc
Q 006386 195 SNLDHSQKDAISKALSS-KNVFMLHGPPGTGKTTTVVEIILQEVKR-------GSKILACAASNIAVDNIVERLVP 262 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~-~~~~lI~GpPGTGKT~ti~~~i~~l~~~-------~~~ILv~a~tn~Avd~l~~rl~~ 262 (647)
..+++-|.+|+..++.. ..-+++++|.|||||.+..-.+.+.+.. +.++||++||...+..+.+.+.+
T Consensus 42 ~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~ 117 (579)
T 3sqw_A 42 PGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKK 117 (579)
T ss_dssp SSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHH
Confidence 35899999999999942 4578999999999998765555544432 24899999999999999888765
No 72
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=98.16 E-value=9.5e-06 Score=95.48 Aligned_cols=149 Identities=17% Similarity=0.198 Sum_probs=98.3
Q ss_pred CCCCCHHHHHHHHHHHcc-CCeEEEEcCCCCchHHHHHHHHHHHHHCCC--eEEEeccchHHHHHHHHHhcc-cCceEEE
Q 006386 194 NSNLDHSQKDAISKALSS-KNVFMLHGPPGTGKTTTVVEIILQEVKRGS--KILACAASNIAVDNIVERLVP-HRVRLVR 269 (647)
Q Consensus 194 ~~~Ln~~Q~~Av~~~l~~-~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~--~ILv~a~tn~Avd~l~~rl~~-~~~~~vr 269 (647)
...|.+.|.+|+..++.. .+-.++.++.|+|||.++..++..++..|. ++||++|+ ..+.+....+.+ .+..+.-
T Consensus 151 ~~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v~v 229 (968)
T 3dmq_A 151 RTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRFAL 229 (968)
T ss_dssp SSCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCCEE
T ss_pred CCCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCEEE
Confidence 357999999999998873 346889999999999999999999888775 99999999 666766665532 2322221
Q ss_pred eCCCCCCChhHHhhhHHHHHhcCCCchhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006386 270 LGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKN 349 (647)
Q Consensus 270 ~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~ 349 (647)
++. ... ... .......+..
T Consensus 230 ~~~------~~~---~~~----------------------------------------------------~~~~~~~~~~ 248 (968)
T 3dmq_A 230 FDD------ERY---AEA----------------------------------------------------QHDAYNPFDT 248 (968)
T ss_dssp CCH------HHH---HHH----------------------------------------------------HHTTCSSSTT
T ss_pred Ecc------chh---hhh----------------------------------------------------hhhccccccc
Confidence 110 000 000 0000123456
Q ss_pred Cceeeecccccccc-----ccCCCCCCEEEEecCCCcch--------HHHHHHHH-hc-CeeeecCCCCC
Q 006386 350 ADVVLTTLTGAVSR-----KLDNTSFDLVIIDEAAQALE--------IACWIALL-KG-SRCILAGDHLQ 404 (647)
Q Consensus 350 ~~vi~~T~~~~~~~-----~l~~~~fd~vIIDEAsq~~e--------~~~l~~l~-~~-~~~vlvGD~~Q 404 (647)
.+|+++|....... .+....|++||||||..+.. ...+..+. .+ ..+.|-|=|.|
T Consensus 249 ~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~ 318 (968)
T 3dmq_A 249 EQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQ 318 (968)
T ss_dssp CSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSS
T ss_pred CCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcCCcEEEEEcCCcc
Confidence 78999998776432 24456899999999987742 22344443 23 57888888876
No 73
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.12 E-value=7.6e-06 Score=90.48 Aligned_cols=65 Identities=22% Similarity=0.253 Sum_probs=49.6
Q ss_pred CCCHHHHHHHH---HHHccCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHHHHHhccc
Q 006386 196 NLDHSQKDAIS---KALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 196 ~Ln~~Q~~Av~---~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
.+-+.|.+++. .++......+|++|.|||||.+...-+.. .+.+|++++||+..++.+.+.+...
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~---~~~~v~i~~pt~~l~~q~~~~~~~l 70 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE---VKPKVLFVVRTHNEFYPIYRDLTKI 70 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH---HCSEEEEEESSGGGHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh---CCCeEEEEcCCHHHHHHHHHHHHHH
Confidence 35688988555 44545678999999999998755333332 5789999999999999998777654
No 74
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=98.11 E-value=5.5e-06 Score=90.55 Aligned_cols=143 Identities=20% Similarity=0.236 Sum_probs=94.8
Q ss_pred CCCCCCHHHHHHHHHHH---ccCCeEEEEcCCCCchHHHHHHHHHHHHHCC--CeEEEeccchHHHHHHHHHhccc--Cc
Q 006386 193 FNSNLDHSQKDAISKAL---SSKNVFMLHGPPGTGKTTTVVEIILQEVKRG--SKILACAASNIAVDNIVERLVPH--RV 265 (647)
Q Consensus 193 ~~~~Ln~~Q~~Av~~~l---~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~--~~ILv~a~tn~Avd~l~~rl~~~--~~ 265 (647)
+...|.+-|.++|..+. ....-.++..+.|+|||.++..++..+...+ .++||++|+. .+.+..+.+.+. +.
T Consensus 34 ~~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~-l~~qw~~e~~~~~~~~ 112 (500)
T 1z63_A 34 IKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLS-VLKNWEEELSKFAPHL 112 (500)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECST-THHHHHHHHHHHCTTS
T ss_pred hhccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccHH-HHHHHHHHHHHHCCCc
Confidence 45679999999997664 2344578888999999999999888887654 7899999965 667776666543 12
Q ss_pred eEEEeCCCCCCChhHHhhhHHHHHhcCCCchhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006386 266 RLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTD 345 (647)
Q Consensus 266 ~~vr~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 345 (647)
++........ ..
T Consensus 113 ~v~~~~g~~~--------------------------------------------------------------------~~ 124 (500)
T 1z63_A 113 RFAVFHEDRS--------------------------------------------------------------------KI 124 (500)
T ss_dssp CEEECSSSTT--------------------------------------------------------------------SC
T ss_pred eEEEEecCch--------------------------------------------------------------------hc
Confidence 2222111100 00
Q ss_pred HhhcCceeeecccccccc-ccCCCCCCEEEEecCCCcchHH--HHHHHH---hcCeeeecCCCCC
Q 006386 346 VIKNADVVLTTLTGAVSR-KLDNTSFDLVIIDEAAQALEIA--CWIALL---KGSRCILAGDHLQ 404 (647)
Q Consensus 346 ~l~~~~vi~~T~~~~~~~-~l~~~~fd~vIIDEAsq~~e~~--~l~~l~---~~~~~vlvGD~~Q 404 (647)
....++|+++|....... .+....|++||||||..+..+. ....+. ...++.|-|=|.|
T Consensus 125 ~~~~~~ivi~t~~~l~~~~~l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~~~l~LTaTP~~ 189 (500)
T 1z63_A 125 KLEDYDIILTTYAVLLRDTRLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIE 189 (500)
T ss_dssp CGGGSSEEEEEHHHHTTCHHHHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCST
T ss_pred cccCCcEEEeeHHHHhccchhcCCCcCEEEEeCccccCCHhHHHHHHHHhhccCcEEEEecCCCC
Confidence 134578888888766532 2455689999999998874432 222222 2367888888876
No 75
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.10 E-value=4.9e-06 Score=80.04 Aligned_cols=39 Identities=18% Similarity=0.161 Sum_probs=35.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccch
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASN 250 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn 250 (647)
..+.+|.||||+||||.+..++..+...|.+|++..|.-
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI 50 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 458899999999999999999999999999999997644
No 76
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=98.09 E-value=7.4e-06 Score=97.15 Aligned_cols=65 Identities=22% Similarity=0.220 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHHHHHhccc
Q 006386 197 LDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 197 Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
+ +-|.+++..++. ...++++||.|||||..+.-++..+...+.++|+++||...+..+.+++.+.
T Consensus 58 p-~iQ~~ai~~il~-g~dvlv~apTGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l 122 (1054)
T 1gku_B 58 R-AIQKMWAKRILR-KESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKY 122 (1054)
T ss_dssp C-HHHHHHHHHHHT-TCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHh-CCCEEEEcCCCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHH
Confidence 6 999999999997 5679999999999998666677777778899999999999999998887654
No 77
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=98.00 E-value=2.6e-05 Score=85.57 Aligned_cols=73 Identities=18% Similarity=0.194 Sum_probs=57.1
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHHHHHhcccCceEEEeC
Q 006386 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVRLVRLG 271 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~~~~~~~vr~g 271 (647)
..+.+.|.+++..++. ..-++|.+|.|+|||.+.. +-.+. .+.++|+++|+.+.+.+..+++.+.+..+..+.
T Consensus 24 ~~~r~~Q~~~i~~il~-g~d~lv~apTGsGKTl~~~--lp~l~-~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~ 96 (523)
T 1oyw_A 24 QQFRPGQEEIIDTVLS-GRDCLVVMPTGGGKSLCYQ--IPALL-LNGLTVVVSPLISLMKDQVDQLQANGVAAACLN 96 (523)
T ss_dssp SSCCTTHHHHHHHHHT-TCCEEEECSCHHHHHHHHH--HHHHH-SSSEEEEECSCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCCCHHHHHHHHHHHc-CCCEEEECCCCcHHHHHHH--HHHHH-hCCCEEEECChHHHHHHHHHHHHHcCCcEEEEe
Confidence 3578899999999997 5678999999999996543 22233 356899999999999999999988776655443
No 78
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.97 E-value=4e-05 Score=81.02 Aligned_cols=46 Identities=35% Similarity=0.407 Sum_probs=35.5
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEec-cc--hHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA-AS--NIAVDNIVE 258 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a-~t--n~Avd~l~~ 258 (647)
.++++.||||+|||||+..++..+...|.+|++++ .+ ..|.+.+..
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~ 146 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQ 146 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHH
Confidence 36789999999999999999999999998887754 33 244444443
No 79
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=97.94 E-value=9.9e-05 Score=83.04 Aligned_cols=149 Identities=18% Similarity=0.272 Sum_probs=94.8
Q ss_pred CCCCCHHHHHHHHHHHc--------cCCeEEEEcCCCCchHHHHHHHHHHHHHCC-------CeEEEeccchHHHHHHHH
Q 006386 194 NSNLDHSQKDAISKALS--------SKNVFMLHGPPGTGKTTTVVEIILQEVKRG-------SKILACAASNIAVDNIVE 258 (647)
Q Consensus 194 ~~~Ln~~Q~~Av~~~l~--------~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~-------~~ILv~a~tn~Avd~l~~ 258 (647)
...|-+-|+++|..... ...-.++.-+.|+|||.+++.++..+...+ .++||++|+ ..+.+-.+
T Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~ 131 (644)
T 1z3i_X 53 SKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYN 131 (644)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHH
T ss_pred hhcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHH
Confidence 35789999999998752 234578888999999999999999987653 469999997 45556555
Q ss_pred Hhccc---CceEEEeCCCCCCChhHHhhhHHHHHhcCCCchhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHH
Q 006386 259 RLVPH---RVRLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEE 335 (647)
Q Consensus 259 rl~~~---~~~~vr~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~ 335 (647)
.+.+. ....+.+.+... . . ...
T Consensus 132 E~~~~~~~~~~~~~~~~g~~---~----------------------------------------~---~~~--------- 156 (644)
T 1z3i_X 132 EVGKWLGGRVQPVAIDGGSK---D----------------------------------------E---IDS--------- 156 (644)
T ss_dssp HHHHHHGGGCCEEEECSSCH---H----------------------------------------H---HHH---------
T ss_pred HHHHHcCCCeeEEEEeCCCH---H----------------------------------------H---HHH---------
Confidence 55433 122232222110 0 0 000
Q ss_pred HHHHHHHHHHHh------hcCceeeeccccccc--cccCCCCCCEEEEecCCCcchH--HHHHH---HHhcCeeeecCCC
Q 006386 336 RKRQQLAVTDVI------KNADVVLTTLTGAVS--RKLDNTSFDLVIIDEAAQALEI--ACWIA---LLKGSRCILAGDH 402 (647)
Q Consensus 336 ~~~~~~~~~~~l------~~~~vi~~T~~~~~~--~~l~~~~fd~vIIDEAsq~~e~--~~l~~---l~~~~~~vlvGD~ 402 (647)
.....+ ...+|+++|...... ..+....|++||+|||..+-.+ ..... +....++.|.|=|
T Consensus 157 ------~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTP 230 (644)
T 1z3i_X 157 ------KLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTP 230 (644)
T ss_dssp ------HHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSC
T ss_pred ------HHHHHHHhcCCCCCCcEEEeeHHHHHhhHHHhhcCCccEEEEECceecCChhhHHHHHHHhcccCcEEEEecCc
Confidence 001111 236788888876653 3355678999999999887433 22222 2233789999998
Q ss_pred CC
Q 006386 403 LQ 404 (647)
Q Consensus 403 ~Q 404 (647)
-|
T Consensus 231 iq 232 (644)
T 1z3i_X 231 IQ 232 (644)
T ss_dssp SG
T ss_pred cc
Confidence 87
No 80
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=97.94 E-value=2.7e-05 Score=86.52 Aligned_cols=73 Identities=14% Similarity=0.095 Sum_probs=57.6
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHHHHHhcccCceEEEeC
Q 006386 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVRLVRLG 271 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~~~~~~~vr~g 271 (647)
..+.+-|.++|..++. ..-++|.+|.|+|||.+..-.+ +..+.++||++|+.+.+....+++.+.++.+.-+.
T Consensus 43 ~~~rp~Q~~~i~~il~-g~d~lv~~pTGsGKTl~~~lpa---l~~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~ 115 (591)
T 2v1x_A 43 EKFRPLQLETINVTMA-GKEVFLVMPTGGGKSLCYQLPA---LCSDGFTLVICPLISLMEDQLMVLKQLGISATMLN 115 (591)
T ss_dssp CSCCTTHHHHHHHHHT-TCCEEEECCTTSCTTHHHHHHH---HTSSSEEEEECSCHHHHHHHHHHHHHHTCCEEECC
T ss_pred CCCCHHHHHHHHHHHc-CCCEEEEECCCChHHHHHHHHH---HHcCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEe
Confidence 4678999999999997 5569999999999997543222 23456999999999999999999887766554443
No 81
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.93 E-value=0.00014 Score=67.95 Aligned_cols=59 Identities=17% Similarity=0.236 Sum_probs=47.7
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchH----HHHHHHHHhcccCceEEEeCC
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNI----AVDNIVERLVPHRVRLVRLGH 272 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~----Avd~l~~rl~~~~~~~vr~g~ 272 (647)
..+..+|.+|+|+||||.+..++...+..|.+|+++-+-.. .-.++.++| ++.+.+.|.
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L---~v~~~~~g~ 89 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPH---GVEFQVMAT 89 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGG---TCEEEECCT
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhC---CcEEEEccc
Confidence 46899999999999999999999999999999999976553 233455555 367777775
No 82
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.93 E-value=2.1e-05 Score=74.47 Aligned_cols=38 Identities=8% Similarity=0.079 Sum_probs=34.2
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccch
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASN 250 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn 250 (647)
.+.++.||.|+||||.+..++..+...|++|++..|..
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~ 66 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCI 66 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 47789999999999999999999999999999998754
No 83
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=97.92 E-value=2.5e-05 Score=91.56 Aligned_cols=68 Identities=13% Similarity=0.025 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHHHHcc-------------CCeEEEEcCCCCchHHHHHHHHHHHHHC--CCeEEEeccchHHHHHHHHHh
Q 006386 196 NLDHSQKDAISKALSS-------------KNVFMLHGPPGTGKTTTVVEIILQEVKR--GSKILACAASNIAVDNIVERL 260 (647)
Q Consensus 196 ~Ln~~Q~~Av~~~l~~-------------~~~~lI~GpPGTGKT~ti~~~i~~l~~~--~~~ILv~a~tn~Avd~l~~rl 260 (647)
.+.+-|..||..++.. ..-.+|+.+.|||||.++..++..+... ..+||+++|++..++.+.+.+
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~f 350 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKEY 350 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHHHHHHHHH
Confidence 4889999999998751 2357999999999999987776433322 369999999999999998877
Q ss_pred ccc
Q 006386 261 VPH 263 (647)
Q Consensus 261 ~~~ 263 (647)
...
T Consensus 351 ~~f 353 (1038)
T 2w00_A 351 QRF 353 (1038)
T ss_dssp HTT
T ss_pred HHh
Confidence 654
No 84
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=97.89 E-value=8.2e-06 Score=87.88 Aligned_cols=60 Identities=20% Similarity=0.284 Sum_probs=50.6
Q ss_pred HHHHHHccCCeEEEEcCCCCchHHH-HHHHHHHHHHCCCeEEEeccchHHHHHHHHHhccc
Q 006386 204 AISKALSSKNVFMLHGPPGTGKTTT-VVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 204 Av~~~l~~~~~~lI~GpPGTGKT~t-i~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
++..++..++.+++.||.|||||.+ +..++..+...+.++|+++||...+.++.+.+...
T Consensus 11 ~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~ 71 (451)
T 2jlq_A 11 VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALRGL 71 (451)
T ss_dssp CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS
T ss_pred HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhcCc
Confidence 4555666677889999999999995 77777778888999999999999999999998643
No 85
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=97.88 E-value=2.4e-05 Score=86.22 Aligned_cols=75 Identities=21% Similarity=0.263 Sum_probs=53.6
Q ss_pred CCCHHHHHHHHH---HHccCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHHHHHhcccCceEEEeCC
Q 006386 196 NLDHSQKDAISK---ALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVRLVRLGH 272 (647)
Q Consensus 196 ~Ln~~Q~~Av~~---~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~~~~~~~vr~g~ 272 (647)
.+.+.|.+++.. ++......+|++|.|||||.+.... . +..+.+|++++||+..++.+.+.+...+.++..+..
T Consensus 7 ~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~--~-~~~~~~~~~~~~t~~l~~q~~~~~~~l~~~~~~l~g 83 (540)
T 2vl7_A 7 QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVL--G-MQLKKKVLIFTRTHSQLDSIYKNAKLLGLKTGFLIG 83 (540)
T ss_dssp --CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHH--H-HHHTCEEEEEESCHHHHHHHHHHHGGGTCCEEEC--
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHH--H-HhCCCcEEEEcCCHHHHHHHHHHHHhcCCcEEEecC
Confidence 467788886554 4445678999999999999643322 2 335789999999999999999988877666665554
Q ss_pred C
Q 006386 273 P 273 (647)
Q Consensus 273 ~ 273 (647)
.
T Consensus 84 r 84 (540)
T 2vl7_A 84 K 84 (540)
T ss_dssp -
T ss_pred C
Confidence 3
No 86
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=97.87 E-value=3.9e-05 Score=94.74 Aligned_cols=67 Identities=13% Similarity=0.207 Sum_probs=55.9
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHH-H-CCCeEEEeccchHHHHHHHHHhc
Q 006386 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEV-K-RGSKILACAASNIAVDNIVERLV 261 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~-~-~~~~ILv~a~tn~Avd~l~~rl~ 261 (647)
..+|+-|.+++..++.++..++|.+|.|||||.+..-.+.+.+ + .+.++++++|+.+.+.+....+.
T Consensus 925 ~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~ 993 (1724)
T 4f92_B 925 PFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWY 993 (1724)
T ss_dssp SBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHH
Confidence 4689999999999988778899999999999998765555544 3 36789999999999998877664
No 87
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.86 E-value=8.9e-05 Score=78.39 Aligned_cols=56 Identities=25% Similarity=0.309 Sum_probs=40.0
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEec-c--chHHHHHHHHHhcccCceEE
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA-A--SNIAVDNIVERLVPHRVRLV 268 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a-~--tn~Avd~l~~rl~~~~~~~v 268 (647)
.+.++.||||+|||||+..++..+.+.|.+|++++ . ...|++.+...-...++.++
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~ 159 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVF 159 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEE
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEE
Confidence 46789999999999999999999999998887665 2 33455555443333344443
No 88
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.84 E-value=2.6e-05 Score=73.14 Aligned_cols=38 Identities=21% Similarity=0.193 Sum_probs=34.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccch
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASN 250 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn 250 (647)
.+.++.||+|+||||.+..++..+...|.+|++..|+-
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEI 46 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 47899999999999999999999999999999998763
No 89
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=97.82 E-value=4.3e-05 Score=82.42 Aligned_cols=55 Identities=22% Similarity=0.356 Sum_probs=47.3
Q ss_pred HccCCeEEEEcCCCCchHHH-HHHHHHHHHHCCCeEEEeccchHHHHHHHHHhccc
Q 006386 209 LSSKNVFMLHGPPGTGKTTT-VVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 209 l~~~~~~lI~GpPGTGKT~t-i~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
+.....++|.||.|||||.+ +..++..+...+.++|+++||...+.++.+++...
T Consensus 18 l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~ 73 (459)
T 2z83_A 18 LRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALRGL 73 (459)
T ss_dssp GSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTTTS
T ss_pred HhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhcCc
Confidence 44567899999999999998 66777777778899999999999999999998643
No 90
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.82 E-value=3e-05 Score=72.27 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=34.7
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccc
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAAS 249 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~t 249 (647)
..+.+|.||.|+|||+-+..++......+.+|++..|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 35889999999999999999999999999999999875
No 91
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=97.79 E-value=6.5e-05 Score=80.50 Aligned_cols=55 Identities=22% Similarity=0.297 Sum_probs=46.5
Q ss_pred cCCeEEEEcCCCCchHHHH-HHHHHHHHHCCCeEEEeccchHHHHHHHHHhcccCc
Q 006386 211 SKNVFMLHGPPGTGKTTTV-VEIILQEVKRGSKILACAASNIAVDNIVERLVPHRV 265 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti-~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~~~~~ 265 (647)
....++|+||.|||||.+. ..++..+...+.++|+++||...+.++.+.+...++
T Consensus 7 ~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~~~v 62 (440)
T 1yks_A 7 KGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDV 62 (440)
T ss_dssp TTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSCE
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhcCCe
Confidence 3678999999999999985 556666677888999999999999999999976643
No 92
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=97.77 E-value=1.2e-05 Score=89.31 Aligned_cols=52 Identities=29% Similarity=0.292 Sum_probs=41.4
Q ss_pred HccCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHHHHHhccc
Q 006386 209 LSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 209 l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
+.....++++||.|||||..+.. .++..+.++|+++||...+.++.+++.+.
T Consensus 229 L~~~~~vlv~ApTGSGKT~a~~l---~ll~~g~~vLVl~PTReLA~Qia~~l~~~ 280 (666)
T 3o8b_A 229 PQSFQVAHLHAPTGSGKSTKVPA---AYAAQGYKVLVLNPSVAATLGFGAYMSKA 280 (666)
T ss_dssp CSSCEEEEEECCTTSCTTTHHHH---HHHHTTCCEEEEESCHHHHHHHHHHHHHH
T ss_pred HHcCCeEEEEeCCchhHHHHHHH---HHHHCCCeEEEEcchHHHHHHHHHHHHHH
Confidence 33466899999999999976554 33457889999999999999998887543
No 93
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=97.76 E-value=4.2e-05 Score=86.02 Aligned_cols=62 Identities=19% Similarity=0.347 Sum_probs=49.0
Q ss_pred HHHHHHH-----ccCCeEEEEcCCCCchHHH-HHHHHHHHHHCCCeEEEeccchHHHHHHHHHhcccC
Q 006386 203 DAISKAL-----SSKNVFMLHGPPGTGKTTT-VVEIILQEVKRGSKILACAASNIAVDNIVERLVPHR 264 (647)
Q Consensus 203 ~Av~~~l-----~~~~~~lI~GpPGTGKT~t-i~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~~~~ 264 (647)
.+|..++ .....++|+||.|||||.+ +..++..+...+.++|+++||...+.++.+++...+
T Consensus 227 ~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~~~ 294 (673)
T 2wv9_A 227 EPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRGLP 294 (673)
T ss_dssp ---CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSC
T ss_pred cchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhcCC
Confidence 6665554 2367899999999999998 566666767788999999999999999999987654
No 94
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.73 E-value=3.6e-05 Score=88.18 Aligned_cols=65 Identities=20% Similarity=0.424 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHH-HC--CCeEEEeccchHHHHHHHHHhcc
Q 006386 198 DHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEV-KR--GSKILACAASNIAVDNIVERLVP 262 (647)
Q Consensus 198 n~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~-~~--~~~ILv~a~tn~Avd~l~~rl~~ 262 (647)
...|++++..++.....++|.||.|||||+.+-.++.... .. |.+|++++|+..++..+.+++.+
T Consensus 95 ~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~ 162 (773)
T 2xau_A 95 VHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAE 162 (773)
T ss_dssp GGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHH
Confidence 4578888888887677899999999999996655543322 12 67899999999999999888754
No 95
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=97.69 E-value=9.2e-05 Score=91.44 Aligned_cols=67 Identities=25% Similarity=0.364 Sum_probs=55.6
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH-----------CCCeEEEeccchHHHHHHHHHhc
Q 006386 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK-----------RGSKILACAASNIAVDNIVERLV 261 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~-----------~~~~ILv~a~tn~Avd~l~~rl~ 261 (647)
+.||+-|.+++..++.++..++|.+|-|+|||.++.-.+...+. .+.++++++|+.+-+.+..+.+.
T Consensus 78 ~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 78 KTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp SBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 47999999999999987889999999999999987655555442 25689999999999988776654
No 96
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.65 E-value=0.00014 Score=69.40 Aligned_cols=39 Identities=18% Similarity=0.186 Sum_probs=35.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccch
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASN 250 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn 250 (647)
..+.++.||.|+||||.+..++......|.+|++..|..
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecC
Confidence 357899999999999999999999999999999998753
No 97
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=97.63 E-value=0.00014 Score=84.10 Aligned_cols=159 Identities=16% Similarity=0.151 Sum_probs=96.3
Q ss_pred CCCCCHHHHHHHHHHH---ccCCeEEEEcCCCCchHHHHHHHHHHHHH---CCCeEEEeccchHHHHHHHHHhccc--Cc
Q 006386 194 NSNLDHSQKDAISKAL---SSKNVFMLHGPPGTGKTTTVVEIILQEVK---RGSKILACAASNIAVDNIVERLVPH--RV 265 (647)
Q Consensus 194 ~~~Ln~~Q~~Av~~~l---~~~~~~lI~GpPGTGKT~ti~~~i~~l~~---~~~~ILv~a~tn~Avd~l~~rl~~~--~~ 265 (647)
...|-+-|.++|..++ ....-.++.-+.|+|||.+++.++..+.. .+.++||++| ...+.+..+.+.+. +.
T Consensus 234 ~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~ 312 (800)
T 3mwy_W 234 GGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPDL 312 (800)
T ss_dssp SSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTTC
T ss_pred CCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCCc
Confidence 4579999999998665 23566889999999999999998887753 3568999999 45566666665543 23
Q ss_pred eEEEeCCCCCCChhHHhhhHHHHHhcCCCchhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006386 266 RLVRLGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTD 345 (647)
Q Consensus 266 ~~vr~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 345 (647)
.++...........+.. ... .... .....
T Consensus 313 ~v~~~~g~~~~r~~~~~----~~~-------------------------~~~~----------------------~~~~~ 341 (800)
T 3mwy_W 313 NCICYMGNQKSRDTIRE----YEF-------------------------YTNP----------------------RAKGK 341 (800)
T ss_dssp CEEECCCSSHHHHHHHH----HHS-------------------------CSCC---------------------------
T ss_pred eEEEEeCCHHHHHHHHH----HHh-------------------------hccc----------------------ccccc
Confidence 33322221100000000 000 0000 00011
Q ss_pred HhhcCceeeecccccccc--ccCCCCCCEEEEecCCCcch--HHHHHHHH---hcCeeeecCCCCC
Q 006386 346 VIKNADVVLTTLTGAVSR--KLDNTSFDLVIIDEAAQALE--IACWIALL---KGSRCILAGDHLQ 404 (647)
Q Consensus 346 ~l~~~~vi~~T~~~~~~~--~l~~~~fd~vIIDEAsq~~e--~~~l~~l~---~~~~~vlvGD~~Q 404 (647)
....++|+++|...+... .+....|++||||||..+.. ......+. ...++.|.|=|-|
T Consensus 342 ~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiq 407 (800)
T 3mwy_W 342 KTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQ 407 (800)
T ss_dssp CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCS
T ss_pred ccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhcCchhHHHHHHHHhhhccEEEeeCCcCC
Confidence 234678999988877532 35566899999999988733 22323332 2378999999877
No 98
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.58 E-value=0.00017 Score=68.13 Aligned_cols=39 Identities=10% Similarity=0.151 Sum_probs=34.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccch
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASN 250 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn 250 (647)
..+.+|.||.|+||||.+...+..+...+.++++..|.-
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~ 66 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAI 66 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEecc
Confidence 458899999999999999999999888999999998854
No 99
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=97.58 E-value=0.00013 Score=77.88 Aligned_cols=51 Identities=24% Similarity=0.399 Sum_probs=44.3
Q ss_pred CCeEEEEcCCCCchHHHH-HHHHHHHHHCCCeEEEeccchHHHHHHHHHhcc
Q 006386 212 KNVFMLHGPPGTGKTTTV-VEIILQEVKRGSKILACAASNIAVDNIVERLVP 262 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti-~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~~ 262 (647)
...++|+||.|||||.+. ..++..++..|.++|+++||...++++.+.+..
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~~ 53 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALRG 53 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhCC
Confidence 457899999999999985 556667788899999999999999999998863
No 100
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.53 E-value=0.00014 Score=67.51 Aligned_cols=50 Identities=24% Similarity=0.267 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHc--------cCCeEEEEcCCCCchHHHHHHHHHHHH-HCCCeEEEec
Q 006386 198 DHSQKDAISKALS--------SKNVFMLHGPPGTGKTTTVVEIILQEV-KRGSKILACA 247 (647)
Q Consensus 198 n~~Q~~Av~~~l~--------~~~~~lI~GpPGTGKT~ti~~~i~~l~-~~~~~ILv~a 247 (647)
++.|++|+..+.. ....++|.|||||||||++..++..+. ..|..++.+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~ 74 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD 74 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 6789988887762 246789999999999999998888876 6676666543
No 101
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.52 E-value=0.00045 Score=69.78 Aligned_cols=35 Identities=34% Similarity=0.433 Sum_probs=30.5
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEec
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (647)
.+.+|.||+|+||||++..++..+...|.+|++.+
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 36789999999999999999998888888887764
No 102
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=97.50 E-value=0.00018 Score=80.28 Aligned_cols=59 Identities=22% Similarity=0.278 Sum_probs=49.1
Q ss_pred HHHHHHccCCeEEEEcCCCCchHHH-HHHHHHHHHHCCCeEEEeccchHHHHHHHHHhccc
Q 006386 204 AISKALSSKNVFMLHGPPGTGKTTT-VVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 204 Av~~~l~~~~~~lI~GpPGTGKT~t-i~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
++..++ ....+++.+|.|||||.+ +..++..+...+.++|+++||...++++.+.+...
T Consensus 179 ~i~~l~-~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~~~ 238 (618)
T 2whx_A 179 DEDIFR-KKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRGL 238 (618)
T ss_dssp CGGGGS-TTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS
T ss_pred CHHHHh-cCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhcCC
Confidence 344444 477899999999999997 57777777788889999999999999999998644
No 103
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=97.41 E-value=0.00015 Score=81.28 Aligned_cols=52 Identities=17% Similarity=0.309 Sum_probs=40.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHHHHHhcccCceE
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVRL 267 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~~~~~~~ 267 (647)
...+++.||+|||||+.+... +... .+.++++||..++.++.+++.+.+..+
T Consensus 155 rk~vlv~apTGSGKT~~al~~---l~~~-~~gl~l~PtR~LA~Qi~~~l~~~g~~v 206 (677)
T 3rc3_A 155 RKIIFHSGPTNSGKTYHAIQK---YFSA-KSGVYCGPLKLLAHEIFEKSNAAGVPC 206 (677)
T ss_dssp CEEEEEECCTTSSHHHHHHHH---HHHS-SSEEEEESSHHHHHHHHHHHHHTTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHH---HHhc-CCeEEEeCHHHHHHHHHHHHHhcCCcE
Confidence 568999999999999944333 3333 455899999999999999998776543
No 104
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.26 E-value=0.00038 Score=65.73 Aligned_cols=35 Identities=31% Similarity=0.343 Sum_probs=29.7
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEec
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (647)
..++|+||||||||+++..+...+...+.+++++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 67899999999999999988888877777776554
No 105
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.26 E-value=0.0011 Score=69.28 Aligned_cols=41 Identities=20% Similarity=0.266 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHc------cCCeEEEEcCCCCchHHHHHHHHHHHHH
Q 006386 198 DHSQKDAISKALS------SKNVFMLHGPPGTGKTTTVVEIILQEVK 238 (647)
Q Consensus 198 n~~Q~~Av~~~l~------~~~~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (647)
.+.+.+.+...+. ....++|+||||||||+++..+...+..
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4556666666552 3457899999999999999888877654
No 106
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.21 E-value=0.00092 Score=68.67 Aligned_cols=26 Identities=12% Similarity=0.308 Sum_probs=22.6
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHC
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQEVKR 239 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~ 239 (647)
..+++||||||||+++..++..+...
T Consensus 26 a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 26 ALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred eEEEECCCCchHHHHHHHHHHHHhCC
Confidence 58999999999999999888887643
No 107
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.17 E-value=0.00067 Score=71.98 Aligned_cols=35 Identities=43% Similarity=0.458 Sum_probs=31.5
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEecc
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (647)
+.+|.|+||+||||++..++..+...|.+|++++.
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 68899999999999999999999988988887753
No 108
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.15 E-value=0.00094 Score=67.53 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=29.4
Q ss_pred CCCEEEEecCCCcchHH--HHHHHHh----cCeeeec-CCCCCCCceeccH
Q 006386 369 SFDLVIIDEAAQALEIA--CWIALLK----GSRCILA-GDHLQLPPTVQSV 412 (647)
Q Consensus 369 ~fd~vIIDEAsq~~e~~--~l~~l~~----~~~~vlv-GD~~QL~p~v~s~ 412 (647)
.+.+||||||..++... .|...+. ...+|++ -++..+.|++.|.
T Consensus 82 ~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR 132 (305)
T 2gno_A 82 TRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR 132 (305)
T ss_dssp SSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT
T ss_pred CceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce
Confidence 57999999998776543 2333221 2456655 5677899988876
No 109
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.13 E-value=0.0008 Score=65.08 Aligned_cols=53 Identities=15% Similarity=0.152 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHc--cCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEecc
Q 006386 196 NLDHSQKDAISKALS--SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (647)
Q Consensus 196 ~Ln~~Q~~Av~~~l~--~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (647)
.-+....+.+..... ....++|.||||||||+++..++..+...+.++..+..
T Consensus 34 ~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~ 88 (242)
T 3bos_A 34 AGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPL 88 (242)
T ss_dssp -CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 345666666666654 25688999999999999999998888777777766654
No 110
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.09 E-value=0.0033 Score=63.89 Aligned_cols=35 Identities=43% Similarity=0.601 Sum_probs=31.0
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEec
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (647)
.+..|.||+|+||||++..++..+...|.+|+++.
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 46789999999999999999999888888888774
No 111
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.08 E-value=0.00054 Score=63.82 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=34.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccc
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAAS 249 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~t 249 (647)
..+.+|.||||+||||.+..++..+...|.+++++.|.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~ 40 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPK 40 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 35789999999999999999999998899999998876
No 112
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.08 E-value=0.0027 Score=63.79 Aligned_cols=35 Identities=43% Similarity=0.458 Sum_probs=30.9
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEecc
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (647)
+..+.|++|+||||++..++..+...|.+|+++..
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~ 134 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGA 134 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 66788999999999999999999888888887754
No 113
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=97.07 E-value=0.0035 Score=70.78 Aligned_cols=64 Identities=14% Similarity=0.014 Sum_probs=49.3
Q ss_pred CCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHHHHHhcc
Q 006386 196 NLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVP 262 (647)
Q Consensus 196 ~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~~ 262 (647)
..++-|..++-.++. .. +.+.+.|||||.+.+--+..-.-.|..++|+|||...+....+-+..
T Consensus 83 ~pt~VQ~~~ip~ll~-G~--Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~ 146 (844)
T 1tf5_A 83 FPFKVQLMGGVALHD-GN--IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGK 146 (844)
T ss_dssp CCCHHHHHHHHHHHT-TS--EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHH
T ss_pred CCcHHHHHhhHHHhC-CC--EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHH
Confidence 578999999998886 33 89999999999876554442234688999999999888776665443
No 114
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.03 E-value=0.0006 Score=61.12 Aligned_cols=52 Identities=13% Similarity=0.207 Sum_probs=38.9
Q ss_pred CCCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEe
Q 006386 193 FNSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (647)
Q Consensus 193 ~~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (647)
+....|.+...++... ....++|.||||||||+++..+...+...|.+++.+
T Consensus 19 f~~g~n~~~~~~l~~~--~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~ 70 (149)
T 2kjq_A 19 FLGTENAELVYVLRHK--HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYI 70 (149)
T ss_dssp CCSCCTHHHHHHCCCC--CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEE
T ss_pred cCcCccHHHHHHHHhc--CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEE
Confidence 4446787777766655 367889999999999999998888776666555444
No 115
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.00053 Score=69.44 Aligned_cols=28 Identities=11% Similarity=0.248 Sum_probs=24.2
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHH
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQEVK 238 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (647)
..+..+|.||||||||+++-.++..+..
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3457899999999999999999988864
No 116
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=96.99 E-value=0.0033 Score=70.79 Aligned_cols=65 Identities=14% Similarity=-0.002 Sum_probs=49.7
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHHHHHhcc
Q 006386 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVP 262 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~~ 262 (647)
....+-|..++-.++. +- +.+.+.|||||.+.+--+......|.+++|+|||...+....+-+..
T Consensus 73 ~~p~~VQ~~~i~~ll~--G~-Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~ 137 (853)
T 2fsf_A 73 MRHFDVQLLGGMVLNE--RC-IAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRP 137 (853)
T ss_dssp CCCCHHHHHHHHHHHS--SE-EEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHH
T ss_pred CCCChHHHhhcccccC--Ce-eeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHH
Confidence 4568999999988776 33 89999999999876554443345688999999999888776665443
No 117
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.96 E-value=0.00057 Score=60.91 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=24.0
Q ss_pred ccCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeE
Q 006386 210 SSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKI 243 (647)
Q Consensus 210 ~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~I 243 (647)
.....++|+||||||||+++..+.......+..+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~ 55 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEF 55 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCC
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCE
Confidence 3466789999999999988876655433334443
No 118
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.92 E-value=0.0011 Score=64.48 Aligned_cols=52 Identities=25% Similarity=0.371 Sum_probs=42.3
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHHHHHhccc
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
...+++|.||||+|||+++..++..+...+.++++++.... ...+.+++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~-~~~~~~~~~~~ 73 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH-PVQVRQNMAQF 73 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC-HHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC-HHHHHHHHHHc
Confidence 45689999999999999999999998888989998886554 46677766543
No 119
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.90 E-value=0.0032 Score=66.71 Aligned_cols=43 Identities=28% Similarity=0.392 Sum_probs=34.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHC-CCeEEEecc---chHHHHHH
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQEVKR-GSKILACAA---SNIAVDNI 256 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~-~~~ILv~a~---tn~Avd~l 256 (647)
+.+|.|++|+|||||+..++..+... |++|++++- ...|++.+
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql 148 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQL 148 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHH
Confidence 56778999999999999999999998 999988743 34555544
No 120
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.90 E-value=0.0019 Score=59.67 Aligned_cols=40 Identities=28% Similarity=0.376 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHc--cCCeEEEEcCCCCchHHHHHHHHHHHHH
Q 006386 199 HSQKDAISKALS--SKNVFMLHGPPGTGKTTTVVEIILQEVK 238 (647)
Q Consensus 199 ~~Q~~Av~~~l~--~~~~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (647)
+.+.+.+...+. .....+|.||||||||+++..++..+..
T Consensus 28 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 28 DEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp HHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 445555555554 2357899999999999999888887765
No 121
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.88 E-value=0.0014 Score=66.46 Aligned_cols=37 Identities=19% Similarity=0.215 Sum_probs=32.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHH-HCCCeEEEecc
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQEV-KRGSKILACAA 248 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~-~~~~~ILv~a~ 248 (647)
....+++||||||||+++..+...+. ..|.+++++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF 189 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEH
Confidence 46789999999999999999999998 88888876643
No 122
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=96.88 E-value=0.0041 Score=70.31 Aligned_cols=64 Identities=14% Similarity=0.005 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHHHHHhcc
Q 006386 196 NLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVP 262 (647)
Q Consensus 196 ~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~~ 262 (647)
...+-|..++-.++. +- +.+.+-|||||.+.+--+....-.|.+++|+|||...+....+-+..
T Consensus 111 rP~~VQ~~~ip~Ll~--G~-Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~ 174 (922)
T 1nkt_A 111 RPFDVQVMGAAALHL--GN-VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGR 174 (922)
T ss_dssp CCCHHHHHHHHHHHT--TE-EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhHhc--CC-EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHH
Confidence 568999999988776 33 99999999999876544433234688999999999888766665443
No 123
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.87 E-value=0.0044 Score=62.27 Aligned_cols=35 Identities=37% Similarity=0.543 Sum_probs=30.1
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEec
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (647)
.+..|.|++|+||||++..++..+...+.+|++..
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 36667799999999999999998888888888765
No 124
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=96.78 E-value=0.0031 Score=71.15 Aligned_cols=64 Identities=13% Similarity=0.041 Sum_probs=49.8
Q ss_pred CCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHHHHHhcc
Q 006386 196 NLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVP 262 (647)
Q Consensus 196 ~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~~ 262 (647)
..++-|..++-.++. .. +.+...|||||.+.+-.+......|.+++|+|||...+....+-+..
T Consensus 79 ~Pt~VQ~~~ip~Llq-G~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~ 142 (997)
T 2ipc_A 79 RHFDVQLIGGAVLHE-GK--IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGP 142 (997)
T ss_dssp CCCHHHHHHHHHHHT-TS--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHH
T ss_pred CCcHHHHhhcccccC-Cc--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHH
Confidence 568999999988886 33 88999999999876655543344688999999999888776665443
No 125
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.76 E-value=0.00095 Score=62.51 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=20.6
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
..+|.||||||||+++.+++..+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999998887765
No 126
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.76 E-value=0.002 Score=59.30 Aligned_cols=40 Identities=33% Similarity=0.448 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHc--cCCeEEEEcCCCCchHHHHHHHHHHHHH
Q 006386 199 HSQKDAISKALS--SKNVFMLHGPPGTGKTTTVVEIILQEVK 238 (647)
Q Consensus 199 ~~Q~~Av~~~l~--~~~~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (647)
+.+.+.+...+. .....+|.||||||||+++..++..+..
T Consensus 28 ~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 28 DTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp HHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 344455555554 2457899999999999999888887755
No 127
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.73 E-value=0.0072 Score=65.11 Aligned_cols=44 Identities=32% Similarity=0.372 Sum_probs=36.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEecc---chHHHHHHH
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA---SNIAVDNIV 257 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~---tn~Avd~l~ 257 (647)
.++|.|+||+||||++..++..+...|++|++++. ...|++.+.
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~ 149 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLK 149 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHH
Confidence 56788999999999999999999888998888765 455555543
No 128
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.69 E-value=0.0015 Score=62.38 Aligned_cols=34 Identities=24% Similarity=0.515 Sum_probs=30.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEec
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (647)
..++.|+||+||||+++.++..+...|.+|+++.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d 41 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGV 41 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEE
Confidence 4689999999999999999999999999887554
No 129
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.66 E-value=0.0034 Score=64.01 Aligned_cols=36 Identities=31% Similarity=0.416 Sum_probs=30.4
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEecc
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (647)
...+|+||||||||+++..+...+...+.+++.+..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~ 73 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA 73 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH
Confidence 478999999999999999888888777777777654
No 130
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.60 E-value=0.0011 Score=62.60 Aligned_cols=34 Identities=24% Similarity=0.589 Sum_probs=25.9
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHH-----HCC-CeEEEe
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEV-----KRG-SKILAC 246 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~-----~~~-~~ILv~ 246 (647)
-+.+|+|+||||||+.++..+..+. +.| .++.++
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~ 45 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFT 45 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEe
Confidence 3789999999999999888776654 456 555555
No 131
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.53 E-value=0.015 Score=60.36 Aligned_cols=66 Identities=20% Similarity=0.182 Sum_probs=53.2
Q ss_pred CCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHH--HCCCeEEEeccchHHHHHHHHHhc
Q 006386 195 SNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEV--KRGSKILACAASNIAVDNIVERLV 261 (647)
Q Consensus 195 ~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~--~~~~~ILv~a~tn~Avd~l~~rl~ 261 (647)
..|++-|+..+..... ....+|..|-+.|||++++..+...+ ..+.+|+++|+|...+.++.+++.
T Consensus 162 ~~L~p~Qk~il~~l~~-~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~ 229 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSS-KRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTK 229 (385)
T ss_dssp CCCCHHHHHHHHHHHH-SSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhhcc-CcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHH
Confidence 4689999998876543 57899999999999999888777643 346799999999998887776654
No 132
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.52 E-value=0.011 Score=62.11 Aligned_cols=35 Identities=37% Similarity=0.543 Sum_probs=30.3
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEec
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (647)
.+..|.||+|+||||++..++..+...|.+|++..
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd 133 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEee
Confidence 35677899999999999999999988888888765
No 133
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=96.44 E-value=0.0052 Score=68.48 Aligned_cols=65 Identities=23% Similarity=0.328 Sum_probs=50.1
Q ss_pred CHHHHHHHH---HHHccCCeEEEEcCCCCchHHH-HHHHHHHHHHCCCeEEEeccchHHHHHHHHHhcc
Q 006386 198 DHSQKDAIS---KALSSKNVFMLHGPPGTGKTTT-VVEIILQEVKRGSKILACAASNIAVDNIVERLVP 262 (647)
Q Consensus 198 n~~Q~~Av~---~~l~~~~~~lI~GpPGTGKT~t-i~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~~ 262 (647)
-+.|++.+. .++......++++|.|||||.. +.-++..+...+.+|+++++|+.-+..+.+-+..
T Consensus 5 R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~ 73 (620)
T 4a15_A 5 RQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRS 73 (620)
T ss_dssp CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHH
Confidence 467877766 4444577899999999999975 4555555556789999999999988888776554
No 134
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.38 E-value=0.0014 Score=58.14 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=18.9
Q ss_pred ccCCeEEEEcCCCCchHHHHHHHH
Q 006386 210 SSKNVFMLHGPPGTGKTTTVVEII 233 (647)
Q Consensus 210 ~~~~~~lI~GpPGTGKT~ti~~~i 233 (647)
.....++|+||||||||+++..+.
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGC
T ss_pred CCCCcEEEECCCCccHHHHHHHHH
Confidence 345679999999999998775543
No 135
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.38 E-value=0.0042 Score=62.62 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
...++++||||||||+++..+...+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999988777665
No 136
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.35 E-value=0.0066 Score=63.25 Aligned_cols=41 Identities=22% Similarity=0.115 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHc------cCCeEEEEcCCCCchHHHHHHHHHHHHHC
Q 006386 199 HSQKDAISKALS------SKNVFMLHGPPGTGKTTTVVEIILQEVKR 239 (647)
Q Consensus 199 ~~Q~~Av~~~l~------~~~~~lI~GpPGTGKT~ti~~~i~~l~~~ 239 (647)
+.+.+.+...+. ....++|+||||||||+++..++..+...
T Consensus 26 ~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~ 72 (384)
T 2qby_B 26 EDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEV 72 (384)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 445555554443 14579999999999999998888877544
No 137
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.35 E-value=0.0032 Score=62.18 Aligned_cols=37 Identities=14% Similarity=0.222 Sum_probs=25.8
Q ss_pred ccCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEe
Q 006386 210 SSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (647)
Q Consensus 210 ~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (647)
.....++|+||||||||+++..+...+...+..++.+
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v 63 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEE
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEE
Confidence 3467899999999999988876665543334444444
No 138
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.32 E-value=0.0037 Score=60.06 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHccC---CeEEEEcCCCCchHHHHHHHHHHHHHC
Q 006386 198 DHSQKDAISKALSSK---NVFMLHGPPGTGKTTTVVEIILQEVKR 239 (647)
Q Consensus 198 n~~Q~~Av~~~l~~~---~~~lI~GpPGTGKT~ti~~~i~~l~~~ 239 (647)
.+...+.+...+... ..++|.||||||||+++..+...+...
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 455556666666533 378999999999999998887766533
No 139
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.31 E-value=0.0041 Score=58.95 Aligned_cols=42 Identities=24% Similarity=0.424 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHccC--CeEEEEcCCCCchHHHHHHHHHHHHHC
Q 006386 198 DHSQKDAISKALSSK--NVFMLHGPPGTGKTTTVVEIILQEVKR 239 (647)
Q Consensus 198 n~~Q~~Av~~~l~~~--~~~lI~GpPGTGKT~ti~~~i~~l~~~ 239 (647)
.+...+.+...+... +.++|.||||||||+++..+...+...
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~ 65 (226)
T 2chg_A 22 QDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE 65 (226)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 455566666666532 358999999999999998888776544
No 140
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.31 E-value=0.0032 Score=62.80 Aligned_cols=24 Identities=38% Similarity=0.614 Sum_probs=20.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQ 235 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~ 235 (647)
...++|+||||||||+++..++..
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 456899999999999988777654
No 141
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.27 E-value=0.0048 Score=59.20 Aligned_cols=50 Identities=24% Similarity=0.391 Sum_probs=38.1
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHHHHHhc
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLV 261 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~ 261 (647)
...+++|.||||+||||++..++..+...+.+|++.+.... .+.+..++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~-~~~~~~~~~ 71 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES-RDSIIRQAK 71 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC-HHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC-HHHHHHHHH
Confidence 34689999999999999999999888777778888775443 344555543
No 142
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.26 E-value=0.0048 Score=60.52 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
..++|+||||||||+++..+...+
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 457999999999999988777654
No 143
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.25 E-value=0.005 Score=62.54 Aligned_cols=52 Identities=13% Similarity=0.249 Sum_probs=42.5
Q ss_pred HccCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHHHHHhc
Q 006386 209 LSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLV 261 (647)
Q Consensus 209 l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~ 261 (647)
+....+++|.|+||+|||+.+..++......|.++++.+.- ...+++..|+.
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE-~s~~~l~~R~~ 116 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE-MGKKENIKRLI 116 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS-SCHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC-CCHHHHHHHHH
Confidence 33456999999999999999999999988888999999875 44566666664
No 144
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.23 E-value=0.034 Score=52.09 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=30.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEecc
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (647)
+++..+-+|+||||+++.++..+...|++||++-.
T Consensus 4 i~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~ 38 (206)
T 4dzz_A 4 ISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDT 38 (206)
T ss_dssp EEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 34556789999999999999999999999998854
No 145
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.20 E-value=0.0037 Score=64.31 Aligned_cols=49 Identities=20% Similarity=0.212 Sum_probs=39.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHHHHHh
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERL 260 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl 260 (647)
..+++|.||||+||||.+..++..+...+.+|++++.-...-....+++
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rl 109 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNL 109 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHc
Confidence 4589999999999999999999998888888888876554444455554
No 146
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.15 E-value=0.0051 Score=62.07 Aligned_cols=28 Identities=32% Similarity=0.420 Sum_probs=23.3
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCC
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRG 240 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~ 240 (647)
..++|+||||||||+++..+...+...+
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l~~~~ 95 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLLHRLG 95 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 3689999999999999988888776543
No 147
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.12 E-value=0.004 Score=62.41 Aligned_cols=49 Identities=10% Similarity=0.160 Sum_probs=37.9
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHC--CCeEEEeccchHHHHHHHHHh
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQEVKR--GSKILACAASNIAVDNIVERL 260 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~--~~~ILv~a~tn~Avd~l~~rl 260 (647)
.++++|.||||||||+.+..++....+. +.+++++..-+..-...++++
T Consensus 28 ~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~l 78 (333)
T 3io5_A 28 SGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSM 78 (333)
T ss_dssp SEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHh
Confidence 3488999999999999999999998876 788888876655433334443
No 148
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.10 E-value=0.0047 Score=63.64 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=36.0
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHH
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIA 252 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~A 252 (647)
...+++|.||||||||+.+..++..+...|.++++++.....
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~ 101 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHAL 101 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCc
Confidence 456899999999999999999999998888888888765533
No 149
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.08 E-value=0.0028 Score=66.82 Aligned_cols=34 Identities=35% Similarity=0.459 Sum_probs=25.5
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccc
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAAS 249 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~t 249 (647)
.-+|++||||||||.++.+++..+ +..++.+..+
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~s 249 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQT---NATFLKLAAP 249 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred CeeEEECcCCCCHHHHHHHHHHHh---CCCEEEEehh
Confidence 358999999999999988777664 5566655543
No 150
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.08 E-value=0.0056 Score=62.89 Aligned_cols=41 Identities=27% Similarity=0.505 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHccCCe--EEEEcCCCCchHHHHHHHHHHHHH
Q 006386 198 DHSQKDAISKALSSKNV--FMLHGPPGTGKTTTVVEIILQEVK 238 (647)
Q Consensus 198 n~~Q~~Av~~~l~~~~~--~lI~GpPGTGKT~ti~~~i~~l~~ 238 (647)
++...+.+...+....+ +++.||||||||+++..++..+..
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 34555556666654444 899999999999999888877653
No 151
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.08 E-value=0.0033 Score=63.19 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=24.7
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEec
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (647)
...+++||||||||+++..++..+ +..++.+.
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~ 68 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM---GINPIMMS 68 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEe
Confidence 367899999999999988887776 55555544
No 152
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.03 E-value=0.0054 Score=63.23 Aligned_cols=41 Identities=22% Similarity=0.353 Sum_probs=35.7
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchH
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNI 251 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~ 251 (647)
...+++|.||||+|||+.+..++..+...|.++++++....
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s 102 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 102 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 45689999999999999999999999888889988876543
No 153
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.02 E-value=0.005 Score=62.18 Aligned_cols=34 Identities=21% Similarity=0.397 Sum_probs=25.7
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEe
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (647)
..++++||||||||+++..+...+...+..++.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~ 81 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI 81 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEe
Confidence 4789999999999999888777765544444443
No 154
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.00 E-value=0.0033 Score=66.31 Aligned_cols=33 Identities=33% Similarity=0.496 Sum_probs=25.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccc
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAAS 249 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~t 249 (647)
=+|++||||||||+++.+++..+ +..++.+..+
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~~ 240 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANST---KAAFIRVNGS 240 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCCeEEEecc
Confidence 48999999999999998887664 5555555443
No 155
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.99 E-value=0.0073 Score=55.00 Aligned_cols=39 Identities=23% Similarity=0.305 Sum_probs=32.7
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNI 251 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~ 251 (647)
.+..|.|++||||||++..++..+...|.+|.++.....
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 578899999999999999999988888888877775543
No 156
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.98 E-value=0.0041 Score=63.60 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=26.6
Q ss_pred HHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHH
Q 006386 201 QKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 201 Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
..+++..++...+..++.||||||||+++..+...+
T Consensus 35 ~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 35 MINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp HHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 344555555456789999999999999887776543
No 157
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.98 E-value=0.0034 Score=65.31 Aligned_cols=33 Identities=30% Similarity=0.509 Sum_probs=24.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEecc
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (647)
.=+|++||||||||.++.+++..+ +..++.+..
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~ 215 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHHT---DCKFIRVSG 215 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEG
T ss_pred CceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEh
Confidence 348999999999999988877664 455555443
No 158
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.97 E-value=0.012 Score=62.80 Aligned_cols=36 Identities=22% Similarity=0.270 Sum_probs=28.5
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHC--CCeEEEecc
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKR--GSKILACAA 248 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~--~~~ILv~a~ 248 (647)
+..+|+||||||||+++..+...+... +.+++.+..
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 478999999999999998888777654 666666543
No 159
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.97 E-value=0.0051 Score=61.77 Aligned_cols=24 Identities=33% Similarity=0.628 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQ 235 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~ 235 (647)
...++|+||||||||+++..+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457899999999999988777654
No 160
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.94 E-value=0.0067 Score=60.91 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=31.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHH-CCCeEEEec
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQEVK-RGSKILACA 247 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~-~~~~ILv~a 247 (647)
..++.|.||+|+||||++..++..+.. .|++|++++
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 458889999999999999999988874 788888775
No 161
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.93 E-value=0.0037 Score=66.04 Aligned_cols=33 Identities=33% Similarity=0.530 Sum_probs=24.9
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEecc
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (647)
.=+|++||||||||.++.+++..+ +..++.+..
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~ 248 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAATI---GANFIFSPA 248 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEG
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeh
Confidence 458899999999999988877664 555555543
No 162
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.92 E-value=0.032 Score=56.48 Aligned_cols=47 Identities=26% Similarity=0.374 Sum_probs=30.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEE-EeccchHHHHHHHHHhcc
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKIL-ACAASNIAVDNIVERLVP 262 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~IL-v~a~tn~Avd~l~~rl~~ 262 (647)
..++|+||||||||+++..+...+ +..+. +.++.-....++...+..
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~---~~~~~~~~~~~~~~~~~l~~~l~~ 86 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHEL---GVNLRVTSGPAIEKPGDLAAILAN 86 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHH---TCCEEEECTTTCCSHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeccccCChHHHHHHHHH
Confidence 578999999999999988877665 33433 333333334555555544
No 163
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.89 E-value=0.0066 Score=62.80 Aligned_cols=49 Identities=22% Similarity=0.226 Sum_probs=39.2
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHHHHH
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVER 259 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~r 259 (647)
...+++|.||||+|||+.+..++..+...|.++++++.-...-....++
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~ 121 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARA 121 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHH
Confidence 4568999999999999999999999988888999888765443333333
No 164
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.89 E-value=0.0062 Score=59.14 Aligned_cols=52 Identities=19% Similarity=0.285 Sum_probs=40.2
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHH-HHCCCeEEEeccchHHHHHHHHHhccc
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQE-VKRGSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l-~~~~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
...+++|.|+||+|||+.+..++... ...+.++++++.... .+.+.+++...
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~-~~~~~~~~~~~ 81 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER-ARDLRREMASF 81 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHHTT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC-HHHHHHHHHHc
Confidence 45689999999999999999988775 455788998887554 45666666544
No 165
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.84 E-value=0.0092 Score=60.69 Aligned_cols=51 Identities=22% Similarity=0.335 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHcc---CCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccch
Q 006386 197 LDHSQKDAISKALSS---KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASN 250 (647)
Q Consensus 197 Ln~~Q~~Av~~~l~~---~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn 250 (647)
-++...+.+...+.. ....++.||||||||+++..+...+ +..++.+..++
T Consensus 30 g~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~~ 83 (324)
T 3u61_B 30 LPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGSD 83 (324)
T ss_dssp CCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETTT
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEcccc
Confidence 356667777777662 2466788889999999988876654 44555544443
No 166
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.84 E-value=0.01 Score=60.44 Aligned_cols=51 Identities=12% Similarity=0.330 Sum_probs=42.3
Q ss_pred ccCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHHHHHhc
Q 006386 210 SSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLV 261 (647)
Q Consensus 210 ~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~ 261 (647)
....+++|.|+||+|||+.+..++..+...|.+|++.+.-. ...++..|+.
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEm-s~~ql~~Rll 94 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEM-SAEQLALRAL 94 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSS-CHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC-CHHHHHHHHH
Confidence 34579999999999999999999999988999999998754 3456666664
No 167
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.79 E-value=0.0093 Score=60.71 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCchHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQ 235 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~ 235 (647)
..+|++||||||||+++..+...
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999988777655
No 168
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.75 E-value=0.0049 Score=64.43 Aligned_cols=32 Identities=31% Similarity=0.423 Sum_probs=24.1
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEec
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (647)
.=+|++||||||||.++.+++..+ +..++.+.
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~ 248 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQT---SATFLRIV 248 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHHH---TCEEEEEE
T ss_pred CCCceECCCCchHHHHHHHHHHHh---CCCEEEEE
Confidence 458999999999999888877664 44555444
No 169
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.75 E-value=0.0056 Score=63.00 Aligned_cols=37 Identities=32% Similarity=0.560 Sum_probs=27.9
Q ss_pred HHHHHHHHHccC--CeEEEEcCCCCchHHHHHHHHHHHH
Q 006386 201 QKDAISKALSSK--NVFMLHGPPGTGKTTTVVEIILQEV 237 (647)
Q Consensus 201 Q~~Av~~~l~~~--~~~lI~GpPGTGKT~ti~~~i~~l~ 237 (647)
..+.+..++... +.+++.||||||||+++..+...+.
T Consensus 45 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 45 AVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp THHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345566666533 4589999999999999988887764
No 170
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.73 E-value=0.009 Score=60.17 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
...++++||||||||+++..+...+
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CceEEEECCCCcCHHHHHHHHHHHh
Confidence 3468999999999999987776653
No 171
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.70 E-value=0.0086 Score=58.70 Aligned_cols=24 Identities=38% Similarity=0.566 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
..++|.||||||||+++..+...+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHc
Confidence 458999999999999888776553
No 172
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.69 E-value=0.0095 Score=60.66 Aligned_cols=24 Identities=33% Similarity=0.623 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
..+|++||||||||+++..++..+
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 468999999999999988777664
No 173
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.69 E-value=0.0076 Score=61.73 Aligned_cols=24 Identities=42% Similarity=0.588 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
..+++.|||||||||++-.+...+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 578999999999999887766654
No 174
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.69 E-value=0.013 Score=60.94 Aligned_cols=49 Identities=22% Similarity=0.285 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHcc------CC--eEEEEcCCCCchHHHHHHHHHHHHHC-CCeEEEe
Q 006386 198 DHSQKDAISKALSS------KN--VFMLHGPPGTGKTTTVVEIILQEVKR-GSKILAC 246 (647)
Q Consensus 198 n~~Q~~Av~~~l~~------~~--~~lI~GpPGTGKT~ti~~~i~~l~~~-~~~ILv~ 246 (647)
.+.+.+.+...+.. .. .++|.||||||||+++..+...+... +..++.+
T Consensus 22 r~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i 79 (389)
T 1fnn_A 22 REQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYI 79 (389)
T ss_dssp CHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEE
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEE
Confidence 34455555554431 13 79999999999999998887776544 4455544
No 175
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.68 E-value=0.0087 Score=62.04 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
...++++||||||||+++..+...+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999887776654
No 176
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.64 E-value=0.04 Score=58.73 Aligned_cols=45 Identities=27% Similarity=0.387 Sum_probs=33.5
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEe-ccchH--HHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC-AASNI--AVDNIV 257 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~-a~tn~--Avd~l~ 257 (647)
.++.|.||.|+||||++..+...+...+.+|++. +.+.. |++.+.
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~ 341 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQ 341 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHH
Confidence 3788999999999999999888777677788886 44332 344443
No 177
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.63 E-value=0.012 Score=61.14 Aligned_cols=49 Identities=27% Similarity=0.279 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHcc------CCeEEEEcCCCCchHHHHHHHHHHHHHC---CCeEEEe
Q 006386 198 DHSQKDAISKALSS------KNVFMLHGPPGTGKTTTVVEIILQEVKR---GSKILAC 246 (647)
Q Consensus 198 n~~Q~~Av~~~l~~------~~~~lI~GpPGTGKT~ti~~~i~~l~~~---~~~ILv~ 246 (647)
-+.+.+.+...+.. ...++|.||||||||+++..++..+... +..++.+
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i 82 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYI 82 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 34555666655541 4578999999999999998888776544 4454443
No 178
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=95.60 E-value=0.025 Score=63.57 Aligned_cols=65 Identities=25% Similarity=0.318 Sum_probs=53.2
Q ss_pred CCCHHHHHHHHHHHc--cCC--eEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHHHHHhccc
Q 006386 196 NLDHSQKDAISKALS--SKN--VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 196 ~Ln~~Q~~Av~~~l~--~~~--~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
.++..|..|+..... ..+ ..++.|.+|||||.+++.++..+ ++++||++|+...+..+.+.|...
T Consensus 8 ~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~~~~~~---~~~~lvv~~~~~~A~ql~~el~~~ 76 (664)
T 1c4o_A 8 SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEAL---GRPALVLAPNKILAAQLAAEFREL 76 (664)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH---TCCEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecCHHHHHHHHHHHHHH
Confidence 678888888876543 122 46789999999999999888664 668999999999999999988765
No 179
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.60 E-value=0.011 Score=59.85 Aligned_cols=40 Identities=20% Similarity=0.406 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHccC--CeEEEEcCCCCchHHHHHHHHHHHH
Q 006386 198 DHSQKDAISKALSSK--NVFMLHGPPGTGKTTTVVEIILQEV 237 (647)
Q Consensus 198 n~~Q~~Av~~~l~~~--~~~lI~GpPGTGKT~ti~~~i~~l~ 237 (647)
.+...+.+...+... +.++++||||||||+++..+...+.
T Consensus 30 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 30 QEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp CHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 455666666666522 3689999999999999988887764
No 180
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.0053 Score=64.82 Aligned_cols=33 Identities=27% Similarity=0.481 Sum_probs=24.4
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEecc
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (647)
.-+|++||||||||.++.+++..+ +..++.+..
T Consensus 244 rGILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~ 276 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLCARAVANRT---DATFIRVIG 276 (467)
T ss_dssp SEEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEG
T ss_pred CceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEh
Confidence 458999999999999887777654 445555443
No 181
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.60 E-value=0.013 Score=61.66 Aligned_cols=51 Identities=20% Similarity=0.419 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHc-cCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEe
Q 006386 196 NLDHSQKDAISKALS-SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (647)
Q Consensus 196 ~Ln~~Q~~Av~~~l~-~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (647)
.+...+..++..++. ..++++|.||.|+||||++..++..+-....+|++.
T Consensus 150 g~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ 201 (418)
T 1p9r_A 150 GMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTV 201 (418)
T ss_dssp CCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEE
T ss_pred CCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEe
Confidence 467778888887765 346899999999999999988876653333456554
No 182
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.59 E-value=0.012 Score=61.06 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEV 237 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~ 237 (647)
..++|.||||||||+++..+...+-
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3789999999999999888877763
No 183
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.59 E-value=0.012 Score=62.70 Aligned_cols=41 Identities=34% Similarity=0.477 Sum_probs=26.2
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNI 256 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l 256 (647)
+.++++||||||||+++..+...+ +....-+..++..++.+
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~---~~~f~~l~a~~~~~~~i 91 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYA---NADVERISAVTSGVKEI 91 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHT---TCEEEEEETTTCCHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHHh---CCCeEEEEeccCCHHHH
Confidence 358999999999999887666553 33444333333334333
No 184
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.56 E-value=0.015 Score=63.30 Aligned_cols=32 Identities=41% Similarity=0.551 Sum_probs=25.2
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEec
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (647)
..++|.||||||||+++..++..+ +..++.+.
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l---~~~~i~in 109 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQN 109 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT---TCEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEe
Confidence 578999999999999998877765 55555443
No 185
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.54 E-value=0.013 Score=54.64 Aligned_cols=33 Identities=27% Similarity=0.411 Sum_probs=26.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEe
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (647)
+..|.|||||||||++..+...+-..|..++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 468999999999999988888777777776543
No 186
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.53 E-value=0.011 Score=54.70 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=26.9
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEe
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (647)
+.+|.|||||||||.+..+...+-..|..+.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~ 35 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKII 35 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE
Confidence 578999999999999988888776666666655
No 187
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.52 E-value=0.017 Score=57.95 Aligned_cols=50 Identities=28% Similarity=0.302 Sum_probs=37.0
Q ss_pred ccCCeEEEEcCCCCchHHHHHHHHHHHHHC-CCeEEEeccchHHHHHHHHHh
Q 006386 210 SSKNVFMLHGPPGTGKTTTVVEIILQEVKR-GSKILACAASNIAVDNIVERL 260 (647)
Q Consensus 210 ~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~-~~~ILv~a~tn~Avd~l~~rl 260 (647)
....+++|.||||+||||.+..++..+... |.+|++.+.... ...+..|+
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~-~~~~~~r~ 83 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDL 83 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSC-HHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCC-HHHHHHHH
Confidence 345699999999999999999988887655 778888765432 23444443
No 188
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.46 E-value=0.011 Score=61.11 Aligned_cols=24 Identities=33% Similarity=0.602 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
..+|++||||||||+++..++..+
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh
Confidence 358999999999999988877765
No 189
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.45 E-value=0.039 Score=56.31 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCchHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQ 235 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~ 235 (647)
..++|+||||||||+++..+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 47899999999999998877555
No 190
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.43 E-value=0.011 Score=60.23 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=37.0
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHC------CCeEEEeccchH-HHHHHHHHh
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKR------GSKILACAASNI-AVDNIVERL 260 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~------~~~ILv~a~tn~-Avd~l~~rl 260 (647)
...+++|.||||||||+.+..++.....+ +.++++++..+. -...+.+++
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~ 162 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMA 162 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHH
Confidence 45689999999999999999998876554 678888776553 134444443
No 191
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.42 E-value=0.014 Score=62.06 Aligned_cols=50 Identities=14% Similarity=0.193 Sum_probs=40.8
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHHHHHhc
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLV 261 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~ 261 (647)
...+++|.|+||+|||+.+..++......|.+|++.+.-.. ...+..|+.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms-~~ql~~R~~ 245 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG-KKENIKRLI 245 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSC-TTHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCC-HHHHHHHHH
Confidence 45699999999999999999999999888999999987543 344555543
No 192
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.41 E-value=0.0096 Score=59.86 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=25.9
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEecc
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (647)
...++|.||||||||+.+..++.. .|.++++++.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~ 156 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATV 156 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEe
Confidence 456799999999999999988776 4555554444
No 193
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.40 E-value=0.012 Score=55.84 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=29.3
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccc
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAAS 249 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~t 249 (647)
...+++|.||||+|||+.+..++. ..+.++++++..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~ 54 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTE 54 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECC
Confidence 356899999999999999988887 567777777643
No 194
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.40 E-value=0.014 Score=57.34 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=28.7
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEec
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (647)
.+.+|.|+|||||||++..+...+-..|..++++.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~ 39 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG 39 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence 46789999999999999988888776787766544
No 195
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.38 E-value=0.019 Score=61.47 Aligned_cols=50 Identities=16% Similarity=0.303 Sum_probs=40.4
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHH-CCCeEEEeccchHHHHHHHHHhc
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQEVK-RGSKILACAASNIAVDNIVERLV 261 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~-~~~~ILv~a~tn~Avd~l~~rl~ 261 (647)
...+++|.|+||+|||+.+..++..+.. .|.+|++.+.-... ..+..|+.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~-~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSA-QQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCH-HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH-HHHHHHHH
Confidence 4579999999999999999999998876 58899998875543 56666653
No 196
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.37 E-value=0.015 Score=53.70 Aligned_cols=34 Identities=32% Similarity=0.394 Sum_probs=28.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEe
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (647)
.+.+|.|+||+||||++..+...+-..|.++.++
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 4678999999999999998888887777777655
No 197
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.37 E-value=0.02 Score=56.94 Aligned_cols=49 Identities=22% Similarity=0.273 Sum_probs=33.8
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHC----------CCeEEEeccchHHHHHHHHHh
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKR----------GSKILACAASNIAVDNIVERL 260 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~----------~~~ILv~a~tn~Avd~l~~rl 260 (647)
...+++|.||||+||||.+..++..+... +.++++++.-... +.+..++
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~-~~~~~r~ 87 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPP-TAIHHRL 87 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCH-HHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCH-HHHHHHH
Confidence 46799999999999999999888755431 3467666554432 4444444
No 198
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.37 E-value=0.0084 Score=59.35 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCchHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQ 235 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~ 235 (647)
..++|+||||||||+++..+...
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999998877765
No 199
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.36 E-value=0.0096 Score=54.10 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=19.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
+.+|.|||||||||++..+...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999887776554
No 200
>1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.25 PDB: 3k70_C*
Probab=95.36 E-value=0.0057 Score=72.97 Aligned_cols=77 Identities=13% Similarity=0.168 Sum_probs=57.1
Q ss_pred CCCeEEccCCCCCCccccEEEEEEeecCCC----Ccccc--------CC-------CCCceeeeecccccceEEEecCC-
Q 006386 558 LKNMEVSTVDGFQGREKEAIIISMVRSNSK----KEVGF--------LS-------DRRRMNVAVTRARRQCCLVCDTE- 617 (647)
Q Consensus 558 ~~~i~v~Tvd~fQG~E~diVIis~vrs~~~----~~~gf--------l~-------d~rrlnVAlTRAk~~l~ivG~~~- 617 (647)
.+.|.++|+|..+|.|+|+|++..+..+.- ...+| .. ++|.+||||||||+.|+|.....
T Consensus 656 ~~~V~l~Tlh~aKgLef~vVfllGlnEG~fP~~~~~~~~dll~~~l~~~dr~~~eEERrLfYvAltrA~~~L~LSy~~~~ 735 (1122)
T 1w36_C 656 AGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRS 735 (1122)
T ss_dssp SSSCEEECCCTTCCCCEEEEEEECCBTTTSSCCCCCCSSCHHHHSCCTTCCCHHHHHHHHHHHHHHHEEEEEEEEEECBC
T ss_pred CCeEEEeccccccCCCcCEEEEeCCCcccCCCCCCCCcHHHhhcccCCCchhhhHHHHHHHHHHHHhhcCeEEEEEeCCc
Confidence 478999999999999999999988754421 11123 11 23459999999999999996543
Q ss_pred -----ccccchHHHHHHHHHHH
Q 006386 618 -----TVSSDGFLKRLIEYFEE 634 (647)
Q Consensus 618 -----~l~~~~~~~~l~~~~~~ 634 (647)
....+++..++.+++..
T Consensus 736 ~~~g~~~~PSrfL~eL~~~l~~ 757 (1122)
T 1w36_C 736 IQDNSERFPSVLVQELIDYIGQ 757 (1122)
T ss_dssp SSSCCBCCBCHHHHHHHHHHHT
T ss_pred CCCCCcCCCCHHHHHHHHHHHH
Confidence 23367889999988865
No 201
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.34 E-value=0.021 Score=60.94 Aligned_cols=33 Identities=27% Similarity=0.525 Sum_probs=23.9
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEec
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (647)
..+|++||||||||+++..++..+ .+..++.+.
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~--~~~~~~~v~ 200 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEA--NNSTFFSIS 200 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHC--CSSEEEEEC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc--CCCCEEEEe
Confidence 468999999999999988777654 233444433
No 202
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.32 E-value=0.019 Score=59.33 Aligned_cols=36 Identities=25% Similarity=0.496 Sum_probs=32.2
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEecc
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (647)
..+.|.|+||+||||++..++..+...|.+|+++..
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~ 115 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV 115 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 367899999999999999999999889999988764
No 203
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.32 E-value=0.0054 Score=60.55 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
..++++||||||||+++..+...+
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh
Confidence 347899999999999988777654
No 204
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.31 E-value=0.022 Score=55.74 Aligned_cols=41 Identities=24% Similarity=0.315 Sum_probs=29.3
Q ss_pred CCCCHHHHHHH-HHHHcc----CCeEEEEcCCCCchHHHHHHHHHH
Q 006386 195 SNLDHSQKDAI-SKALSS----KNVFMLHGPPGTGKTTTVVEIILQ 235 (647)
Q Consensus 195 ~~Ln~~Q~~Av-~~~l~~----~~~~lI~GpPGTGKT~ti~~~i~~ 235 (647)
.++|+.+.... ...+.. ....++.||||||||..+.+++..
T Consensus 82 qg~~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 82 NGYDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp TTCCHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 46788875553 333432 236899999999999999877764
No 205
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.26 E-value=0.011 Score=59.60 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=20.7
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHH
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
....++|+||||||||+++..+....
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhC
Confidence 45689999999999998876665543
No 206
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.23 E-value=0.014 Score=63.41 Aligned_cols=50 Identities=24% Similarity=0.228 Sum_probs=41.2
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHC-CCeEEEeccchHHHHHHHHHhc
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKR-GSKILACAASNIAVDNIVERLV 261 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~-~~~ILv~a~tn~Avd~l~~rl~ 261 (647)
...+++|.|+||+|||+.+..++..+... |.+|++++.-.. ..++..|+.
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s-~~~l~~r~~ 291 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDLI 291 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC-HHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC-HHHHHHHHH
Confidence 45689999999999999999999998876 889999987554 346666653
No 207
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.23 E-value=0.014 Score=58.98 Aligned_cols=41 Identities=24% Similarity=0.431 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHccC--CeEEEEcCCCCchHHHHHHHHHHHHH
Q 006386 198 DHSQKDAISKALSSK--NVFMLHGPPGTGKTTTVVEIILQEVK 238 (647)
Q Consensus 198 n~~Q~~Av~~~l~~~--~~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (647)
.+...+.+...+... +.++++||||||||+++..++..+..
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~ 64 (319)
T 2chq_A 22 QDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG 64 (319)
T ss_dssp CHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcC
Confidence 445555565555422 35899999999999999888877653
No 208
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.22 E-value=0.019 Score=61.56 Aligned_cols=24 Identities=42% Similarity=0.714 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
.-.|+.||||||||+++..+...+
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHh
Confidence 468999999999999998877765
No 209
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.21 E-value=0.01 Score=54.42 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
.+.+|.|||||||||++..+...+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999988776654
No 210
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.16 E-value=0.013 Score=63.25 Aligned_cols=34 Identities=24% Similarity=0.250 Sum_probs=25.1
Q ss_pred HHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHH
Q 006386 203 DAISKALSSKNVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 203 ~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
+++..++.....+++.||||||||+++..+...+
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHHHHHHHHHH
Confidence 3444444457899999999999998887666543
No 211
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.15 E-value=0.02 Score=53.10 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=26.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEe
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (647)
+.+|.|+|||||||++..+...+-..|..++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~ 34 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLY 34 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 468999999999999988887776567666543
No 212
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.15 E-value=0.018 Score=59.66 Aligned_cols=40 Identities=20% Similarity=0.284 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHccC---CeEEEEcCCCCchHHHHHHHHHHHH
Q 006386 198 DHSQKDAISKALSSK---NVFMLHGPPGTGKTTTVVEIILQEV 237 (647)
Q Consensus 198 n~~Q~~Av~~~l~~~---~~~lI~GpPGTGKT~ti~~~i~~l~ 237 (647)
.+...+.+..++... ..++|+||||||||+++..+...+.
T Consensus 21 ~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344455566555422 3579999999999999988776653
No 213
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.14 E-value=0.015 Score=60.10 Aligned_cols=25 Identities=44% Similarity=0.559 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
...++|+||||||||+++..++..+
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999988776553
No 214
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.06 E-value=0.024 Score=51.90 Aligned_cols=37 Identities=24% Similarity=0.217 Sum_probs=30.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEecc
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (647)
-++..|.||+|+||||++..++..+...+.++-++..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~ 42 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEee
Confidence 3678999999999999999999887777777665554
No 215
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.02 E-value=0.015 Score=59.63 Aligned_cols=51 Identities=22% Similarity=0.170 Sum_probs=36.9
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHH------CCCeEEEeccchH-HHHHHHHHhc
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQEVK------RGSKILACAASNI-AVDNIVERLV 261 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~------~~~~ILv~a~tn~-Avd~l~~rl~ 261 (647)
...+++|.||||||||+.+..++..... .+.++++++..+. ..+.+.+++.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~ 178 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIAD 178 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3458999999999999999998887544 3678888876653 2444554443
No 216
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.02 E-value=0.028 Score=59.97 Aligned_cols=50 Identities=14% Similarity=0.205 Sum_probs=40.4
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHH-CCCeEEEeccchHHHHHHHHHhc
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQEVK-RGSKILACAASNIAVDNIVERLV 261 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~-~~~~ILv~a~tn~Avd~l~~rl~ 261 (647)
...+++|.|+||+|||+.+..++..... .|.+|++.+.-.. ...+..|+.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~-~~~l~~R~~ 249 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP-AAQLTLRMM 249 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC-HHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC-HHHHHHHHH
Confidence 4568999999999999999999998876 4889999887544 346666654
No 217
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.02 E-value=0.011 Score=58.79 Aligned_cols=21 Identities=38% Similarity=0.684 Sum_probs=17.9
Q ss_pred EEEEcCCCCchHHHHHHHHHH
Q 006386 215 FMLHGPPGTGKTTTVVEIILQ 235 (647)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~~ 235 (647)
+++.||||||||+++-.++..
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 899999999999988766543
No 218
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.02 E-value=0.017 Score=56.60 Aligned_cols=35 Identities=23% Similarity=0.195 Sum_probs=31.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEec
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (647)
..++++.|.||+||||++..++..+. .|.+|+++.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd 48 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVN 48 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEe
Confidence 35788999999999999999999998 899998876
No 219
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.01 E-value=0.021 Score=57.75 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHccC--CeEEEEcCCCCchHHHHHHHHHHHHH
Q 006386 199 HSQKDAISKALSSK--NVFMLHGPPGTGKTTTVVEIILQEVK 238 (647)
Q Consensus 199 ~~Q~~Av~~~l~~~--~~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (647)
+...+.+...+... +.++++||||||||+++..++..+..
T Consensus 27 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~ 68 (323)
T 1sxj_B 27 KETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG 68 (323)
T ss_dssp THHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcC
Confidence 34455566665522 34899999999999999888877653
No 220
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.01 E-value=0.02 Score=59.94 Aligned_cols=23 Identities=35% Similarity=0.670 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCchHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQ 235 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~ 235 (647)
..+||+||||||||+++..+...
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999988777544
No 221
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.99 E-value=0.021 Score=55.36 Aligned_cols=39 Identities=26% Similarity=0.351 Sum_probs=29.7
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHH-HCCCeEEEeccc
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQEV-KRGSKILACAAS 249 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~-~~~~~ILv~a~t 249 (647)
...++.|.||+|+||||++..++...+ ..+..+++....
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~ 68 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEcc
Confidence 467899999999999999988886554 566666655543
No 222
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.97 E-value=0.017 Score=54.23 Aligned_cols=25 Identities=28% Similarity=0.191 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
....+|.|||||||||++..+...+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4578999999999999988887665
No 223
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.96 E-value=0.016 Score=53.36 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
....+|.|||||||||++..+...+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578899999999999988877665
No 224
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.94 E-value=0.023 Score=59.59 Aligned_cols=27 Identities=22% Similarity=0.201 Sum_probs=22.5
Q ss_pred CCeEEE--EcCCCCchHHHHHHHHHHHHH
Q 006386 212 KNVFML--HGPPGTGKTTTVVEIILQEVK 238 (647)
Q Consensus 212 ~~~~lI--~GpPGTGKT~ti~~~i~~l~~ 238 (647)
.+.++| .||||||||+++..+...+..
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 457888 999999999999888877654
No 225
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.91 E-value=0.016 Score=53.69 Aligned_cols=28 Identities=32% Similarity=0.455 Sum_probs=23.1
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCC
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRG 240 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~ 240 (647)
.+.+|.|||||||||++..+...+-..|
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g 31 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEG 31 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 4788999999999999888877765455
No 226
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.87 E-value=0.014 Score=53.33 Aligned_cols=21 Identities=38% Similarity=0.610 Sum_probs=18.2
Q ss_pred eEEEEcCCCCchHHHHHHHHH
Q 006386 214 VFMLHGPPGTGKTTTVVEIIL 234 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~ 234 (647)
+.+|.|||||||||++..+..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 678999999999998877665
No 227
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.86 E-value=0.022 Score=54.98 Aligned_cols=40 Identities=15% Similarity=0.126 Sum_probs=29.9
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHH------CCCeEEEeccch
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQEVK------RGSKILACAASN 250 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~------~~~~ILv~a~tn 250 (647)
...+++|.||||+|||+++..++...+. .+.++++++...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 3568999999999999999998876433 245666665444
No 228
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.79 E-value=0.015 Score=52.85 Aligned_cols=29 Identities=31% Similarity=0.673 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEE
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILA 245 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv 245 (647)
.+.+|.|||||||||++..+ . ..|..++-
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~---~~g~~~i~ 30 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-K---ERGAKVIV 30 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-H---HTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHH-H---HCCCcEEE
Confidence 36789999999999988766 2 33555443
No 229
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.78 E-value=0.017 Score=53.53 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
.+.+|.|+|||||||++..+...+
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999988777665
No 230
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.77 E-value=0.013 Score=57.16 Aligned_cols=21 Identities=38% Similarity=0.662 Sum_probs=18.1
Q ss_pred EEEEcCCCCchHHHHHHHHHH
Q 006386 215 FMLHGPPGTGKTTTVVEIILQ 235 (647)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~~ 235 (647)
++|.||||||||+++..+...
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999988776654
No 231
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.76 E-value=0.06 Score=66.67 Aligned_cols=47 Identities=23% Similarity=0.365 Sum_probs=40.1
Q ss_pred HHHHHc-----cCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchH
Q 006386 205 ISKALS-----SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNI 251 (647)
Q Consensus 205 v~~~l~-----~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~ 251 (647)
+..++. ....++|.||||||||+++.+++......|.++++.++.+.
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 1466 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccc
Confidence 555554 45689999999999999999999999999999999988765
No 232
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.74 E-value=0.02 Score=52.62 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=20.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
..+.+|.|||||||||++..+...+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578899999999999888777654
No 233
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=94.74 E-value=0.023 Score=55.50 Aligned_cols=52 Identities=10% Similarity=0.105 Sum_probs=42.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHHHHHhcccC
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHR 264 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~~~~ 264 (647)
...++|.|+||||||+.....+...+++|.+++++++.. ....+..+....|
T Consensus 21 gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e-~~~~l~~~~~~~G 72 (260)
T 3bs4_A 21 SLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISY-PLQLIIRILSRFG 72 (260)
T ss_dssp CEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSS-CHHHHHHHHHHTT
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeC-CHHHHHHHHHHcC
Confidence 457899999999999888999999999999999999954 4556666665544
No 234
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.73 E-value=0.029 Score=60.24 Aligned_cols=40 Identities=30% Similarity=0.408 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHc--cCCeEEEEcCCCCchHHHHHHHHHHHHH
Q 006386 199 HSQKDAISKALS--SKNVFMLHGPPGTGKTTTVVEIILQEVK 238 (647)
Q Consensus 199 ~~Q~~Av~~~l~--~~~~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (647)
+...+.+...+. ..+..|+.||||||||+++-.+...+..
T Consensus 186 ~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 186 SKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp HHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 444555555553 3457899999999999988877776643
No 235
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.73 E-value=0.015 Score=59.59 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
.+.++|+||||||||+++..+...+
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred CceEEEECCCCccHHHHHHHHHHhC
Confidence 4569999999999999887776653
No 236
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.68 E-value=0.037 Score=52.00 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=23.7
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeE
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKI 243 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~I 243 (647)
.+.+|.|||||||||++..+...+-..| .+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~ 34 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR-DV 34 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS-CE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC-CE
Confidence 3678999999999999988887764445 44
No 237
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.67 E-value=0.034 Score=52.44 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=27.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEE
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILA 245 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv 245 (647)
..+.+|.|+|||||||++..+...+-..+-.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~ 42 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAGHRAEL 42 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 3578899999999999999888877666666543
No 238
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.67 E-value=0.027 Score=57.31 Aligned_cols=47 Identities=28% Similarity=0.372 Sum_probs=34.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEec-cc--hHHHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA-AS--NIAVDNIVE 258 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a-~t--n~Avd~l~~ 258 (647)
..++.|.||+|+||||++..++..+...+.+|++.+ .+ ..|.+.+..
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~ 178 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEE 178 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHH
Confidence 347889999999999999999888777777777664 22 234454443
No 239
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.62 E-value=0.016 Score=60.26 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=20.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
...++++||||||||+++..+...+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999887776654
No 240
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=94.57 E-value=0.03 Score=57.63 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=34.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccch
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASN 250 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn 250 (647)
..++++.|.+|+||||+++.++..+...|++||++.---
T Consensus 26 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 26 TKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP 64 (349)
T ss_dssp CEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT
T ss_pred CEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 347789999999999999999999999999999987443
No 241
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=94.54 E-value=0.065 Score=52.92 Aligned_cols=34 Identities=24% Similarity=0.454 Sum_probs=29.6
Q ss_pred CeEEEEcC-CCCchHHHHHHHHHHHHHCCCeEEEe
Q 006386 213 NVFMLHGP-PGTGKTTTVVEIILQEVKRGSKILAC 246 (647)
Q Consensus 213 ~~~lI~Gp-PGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (647)
....|.++ ||.||||+++.++..+.+.|++||++
T Consensus 83 kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLI 117 (271)
T 3bfv_A 83 QSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIV 117 (271)
T ss_dssp CEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 45666665 99999999999999999999999986
No 242
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.54 E-value=0.023 Score=58.40 Aligned_cols=42 Identities=19% Similarity=0.301 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHH-cc--CCeEEEEcCCCCchHHHHHHHHHHHHHC
Q 006386 198 DHSQKDAISKAL-SS--KNVFMLHGPPGTGKTTTVVEIILQEVKR 239 (647)
Q Consensus 198 n~~Q~~Av~~~l-~~--~~~~lI~GpPGTGKT~ti~~~i~~l~~~ 239 (647)
++...+++..++ .. .+..+|.|||||||||++..++..+...
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~ 63 (354)
T 1sxj_E 19 NEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGP 63 (354)
T ss_dssp CHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCT
T ss_pred CHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 455566666665 32 1348999999999999998888766543
No 243
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.54 E-value=0.034 Score=55.88 Aligned_cols=37 Identities=32% Similarity=0.489 Sum_probs=30.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEecc
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (647)
..++.|.||.|+||||++..+...+...+.+|++.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~ 138 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAG 138 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEee
Confidence 3578899999999999999888877666777777653
No 244
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.52 E-value=0.033 Score=56.00 Aligned_cols=35 Identities=34% Similarity=0.510 Sum_probs=29.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEec
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (647)
.++.|.||.|+||||++..+...+...+.+|++.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 47889999999999999998888776677787765
No 245
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.49 E-value=0.02 Score=52.07 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=18.9
Q ss_pred CeEEEEcCCCCchHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQ 235 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~ 235 (647)
.+..|.|||||||||++..+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999987666544
No 246
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.47 E-value=0.023 Score=52.35 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=19.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
+.+|.|||||||||++..+...+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999887776654
No 247
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.47 E-value=0.023 Score=52.28 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
...+|.|+|||||||+...+...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999887776654
No 248
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=94.46 E-value=0.033 Score=56.65 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=33.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccc
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAAS 249 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~t 249 (647)
.++++.|-+|+||||+++.++..+.+.|++||++..-
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D 51 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTD 51 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 4788999999999999999999999999999998753
No 249
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.43 E-value=0.024 Score=52.56 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
.+.+|.|+|||||||++..+...+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999887766554
No 250
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.43 E-value=0.026 Score=52.45 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
..+.+|.|||||||||++..+...+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999888777654
No 251
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.42 E-value=0.016 Score=55.19 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
..+.+|.||||+||||.+..++..+
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999887776654
No 252
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.41 E-value=0.026 Score=51.12 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
...+|.|+|||||||+...+...+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 478899999999999887776554
No 253
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.41 E-value=0.023 Score=55.57 Aligned_cols=23 Identities=26% Similarity=0.561 Sum_probs=19.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
+.+|.|||||||||++..++..+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 57899999999999988887654
No 254
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.39 E-value=0.023 Score=51.87 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=19.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
..+|.|||||||||++..+...+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 57899999999999887776654
No 255
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.38 E-value=0.025 Score=53.04 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=19.6
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
+.+|.|||||||||++..+...+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 67899999999999887776654
No 256
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.38 E-value=0.03 Score=60.59 Aligned_cols=48 Identities=21% Similarity=0.275 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEE
Q 006386 197 LDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILA 245 (647)
Q Consensus 197 Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv 245 (647)
+++.+.+-+..++.....++|.||+|+||||++..++. ++.+..+++.
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~-~i~~~~giit 292 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMM-FIPPDAKVVS 292 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGG-GSCTTCCEEE
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHh-hCCCCCCEEE
Confidence 67777777877776566799999999999999977654 4445455443
No 257
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.37 E-value=0.038 Score=52.45 Aligned_cols=35 Identities=26% Similarity=0.336 Sum_probs=29.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEe
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (647)
..+.+|.||||+||||.+..+...+-..|..+.++
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 34678999999999999999888887778777554
No 258
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.34 E-value=0.012 Score=54.01 Aligned_cols=46 Identities=24% Similarity=0.408 Sum_probs=29.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHHHHHhccc
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
+++|.||||||||+.+..++.. +.+++.++.....-+++.+|+..+
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~~~~d~e~~~rI~~h 46 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD----APQVLYIATSQILDDEMAARIQHH 46 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS----CSSEEEEECCCC------CHHHHH
T ss_pred CEEEECCCCCcHHHHHHHHHhc----CCCeEEEecCCCCCHHHHHHHHHH
Confidence 3689999999999988776644 667777776555456777776544
No 259
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.31 E-value=0.02 Score=56.88 Aligned_cols=21 Identities=38% Similarity=0.662 Sum_probs=18.1
Q ss_pred EEEEcCCCCchHHHHHHHHHH
Q 006386 215 FMLHGPPGTGKTTTVVEIILQ 235 (647)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~~ 235 (647)
++|.||||||||+++..+...
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 799999999999988776654
No 260
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.31 E-value=0.046 Score=51.45 Aligned_cols=32 Identities=13% Similarity=0.199 Sum_probs=25.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHCCCeE
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKI 243 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~I 243 (647)
..+.+|.|+|||||||++..+...+-..+-.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 34788999999999999988887775555555
No 261
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.30 E-value=0.037 Score=56.41 Aligned_cols=38 Identities=13% Similarity=0.264 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHH
Q 006386 199 HSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 199 ~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
+.+.+.+..++...+.++|.||+|+|||+.+.++...+
T Consensus 18 ~~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 18 EEESRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp HHHHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHHc
Confidence 44556666666545799999999999999998877653
No 262
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.28 E-value=0.026 Score=53.45 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=18.5
Q ss_pred EEEEcCCCCchHHHHHHHHHHH
Q 006386 215 FMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~~l 236 (647)
.+|.|||||||||++..+...+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999887776654
No 263
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.23 E-value=0.028 Score=53.07 Aligned_cols=23 Identities=30% Similarity=0.704 Sum_probs=18.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
..+|.||||+||+|.+..++..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999887766554
No 264
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.22 E-value=0.022 Score=52.77 Aligned_cols=24 Identities=33% Similarity=0.617 Sum_probs=19.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQ 235 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~ 235 (647)
..+++|.||||+||||++..+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 457889999999999988766543
No 265
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.21 E-value=0.029 Score=52.19 Aligned_cols=25 Identities=24% Similarity=0.500 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
..+.+|.|||||||||++..+...+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999887776654
No 266
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.20 E-value=0.032 Score=52.23 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
..++.|.||||+||||++..+...+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4688999999999999988776655
No 267
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.20 E-value=0.027 Score=52.85 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
.+.+|.||||+||||++..+...+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999887776654
No 268
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.19 E-value=0.028 Score=51.95 Aligned_cols=24 Identities=38% Similarity=0.606 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
.+.+|.|||||||||++..+...+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999887776554
No 269
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.17 E-value=0.029 Score=53.47 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
.+.+|.|||||||||.+..+...+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999888777654
No 270
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.15 E-value=0.029 Score=50.88 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
.+.+|.|+|||||||++..+...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999887776654
No 271
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.12 E-value=0.023 Score=56.75 Aligned_cols=24 Identities=38% Similarity=0.673 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
.+++|.|||||||||++..+...+
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999988776653
No 272
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=94.12 E-value=0.043 Score=56.06 Aligned_cols=36 Identities=17% Similarity=0.215 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHH
Q 006386 199 HSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 199 ~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
+.+.+.+.. +.. ++++|.||+|+|||+.+.+++..+
T Consensus 19 ~~el~~L~~-l~~-~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 19 EKEIEKLKG-LRA-PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp HHHHHHHHH-TCS-SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hcC-CcEEEECCCCCCHHHHHHHHHHhc
Confidence 455666777 764 799999999999999998887664
No 273
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.11 E-value=0.04 Score=56.73 Aligned_cols=36 Identities=25% Similarity=0.458 Sum_probs=28.0
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHC-CCeEEEe
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKR-GSKILAC 246 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~-~~~ILv~ 246 (647)
..++++|.||.|+||||++..++..+-.. +..|+..
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ 158 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTI 158 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEc
Confidence 45799999999999999998888776544 5565443
No 274
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.09 E-value=0.044 Score=56.33 Aligned_cols=35 Identities=34% Similarity=0.510 Sum_probs=29.4
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEec
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (647)
.++.|.||.|+||||++..+...+...+.+|++.+
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g 192 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 192 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred eEEEEEcCCCChHHHHHHHHHhhccccCCEEEEec
Confidence 36789999999999999998888776677777765
No 275
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=94.08 E-value=0.082 Score=53.00 Aligned_cols=35 Identities=26% Similarity=0.427 Sum_probs=30.4
Q ss_pred CeEEEEcC-CCCchHHHHHHHHHHHHHCCCeEEEec
Q 006386 213 NVFMLHGP-PGTGKTTTVVEIILQEVKRGSKILACA 247 (647)
Q Consensus 213 ~~~lI~Gp-PGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (647)
.+..|.|+ ||.||||+.+.++..+...|++||++-
T Consensus 105 kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 140 (299)
T 3cio_A 105 NILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFID 140 (299)
T ss_dssp CEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEE
Confidence 46667765 899999999999999999999999874
No 276
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.05 E-value=0.027 Score=57.27 Aligned_cols=50 Identities=20% Similarity=0.246 Sum_probs=35.6
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHH------------HCC----CeEEEeccchHH-HHHHHHHh
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQEV------------KRG----SKILACAASNIA-VDNIVERL 260 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~------------~~~----~~ILv~a~tn~A-vd~l~~rl 260 (647)
...+++|.||||||||+.+..++.... ..| .++++++..+.. .+.+.+++
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~ 163 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMA 163 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHH
Confidence 346899999999999999999887642 224 688888766542 44555544
No 277
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.03 E-value=0.032 Score=52.13 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=19.5
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
+.+|.|+|||||||.+..+...+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 46899999999999888777665
No 278
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.02 E-value=0.017 Score=54.56 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=25.7
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEe
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (647)
+.+|.|||||||||.+..+...+-..|..|.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~ 34 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATL 34 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 578999999999999888877775556555544
No 279
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.01 E-value=0.032 Score=53.12 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
...+|.|||||||||.+..+...+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999887777654
No 280
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.00 E-value=0.026 Score=53.54 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=17.7
Q ss_pred EEEEcCCCCchHHHHHHHHHH
Q 006386 215 FMLHGPPGTGKTTTVVEIILQ 235 (647)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~~ 235 (647)
.+|.|||||||||++..+...
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578999999999988776654
No 281
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.99 E-value=0.047 Score=57.61 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
...++.||||||||+++..++..+
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHc
Confidence 568999999999999887776654
No 282
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.99 E-value=0.036 Score=51.16 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=19.7
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQ 235 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~ 235 (647)
....+|.|||||||||++..+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 346889999999999988766654
No 283
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.97 E-value=0.057 Score=49.43 Aligned_cols=34 Identities=26% Similarity=0.242 Sum_probs=25.3
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEe
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (647)
.+..|.|+|||||||++..+...+...|..++.+
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~ 39 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 39 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEE
Confidence 4678999999999998887777665556554433
No 284
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.97 E-value=0.053 Score=56.69 Aligned_cols=58 Identities=16% Similarity=0.286 Sum_probs=44.9
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHHHHHhcccCceEEEeCC
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVRLVRLGH 272 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~~~~~~~vr~g~ 272 (647)
.++.++|.||+|+|||+++..++.++...|.+|+++-+.+.... +++. .+..+++++.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~~~~-~~~~---~gg~~~~~~~ 91 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPEREYKE-MCRK---LGGVWINCTG 91 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCCSHH-HHHH---TTCEEEETTS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcCHHH-HHHH---cCCEEEEECC
Confidence 36789999999999999999999999888999999988776543 3333 2456666653
No 285
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.95 E-value=0.054 Score=50.68 Aligned_cols=47 Identities=15% Similarity=0.293 Sum_probs=31.6
Q ss_pred CCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHCCCe
Q 006386 194 NSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSK 242 (647)
Q Consensus 194 ~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ 242 (647)
...++..++.+... ....++.|.||+|+||||++..+...+-..|..
T Consensus 9 ~~~~~~~~~~~~~~--~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~ 55 (200)
T 3uie_A 9 ECSVEKVDRQRLLD--QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKL 55 (200)
T ss_dssp -CCCCHHHHHHHHT--SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCC
T ss_pred ccccCHHHHHHhcC--CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCce
Confidence 34566666544321 224577899999999999988887777655643
No 286
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.93 E-value=0.036 Score=50.54 Aligned_cols=24 Identities=29% Similarity=0.582 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
.+.+|.||||+||||++..+...+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh
Confidence 478899999999999887766544
No 287
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.91 E-value=0.082 Score=49.88 Aligned_cols=50 Identities=24% Similarity=0.258 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHH-HCCCeEEEec
Q 006386 196 NLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEV-KRGSKILACA 247 (647)
Q Consensus 196 ~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~-~~~~~ILv~a 247 (647)
.....++.... .....+.+|.|+||+||||++..+...+- ..|.++.++.
T Consensus 11 ~~~~~~r~~~~--~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 11 ALTRSERTELR--NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp CCCHHHHHHHH--TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred ccCHHHhhccc--CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 45566666533 22345778999999999998888777765 4565555553
No 288
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.89 E-value=0.042 Score=53.62 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=19.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
..+|.|||||||||++..+...+
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 67899999999999887776553
No 289
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.87 E-value=0.022 Score=52.28 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=15.2
Q ss_pred CeEEEEcCCCCchHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQ 235 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~ 235 (647)
.+.+|.|+|||||||++..+...
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47889999999999988776554
No 290
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=93.85 E-value=0.048 Score=55.61 Aligned_cols=38 Identities=26% Similarity=0.331 Sum_probs=34.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccc
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAAS 249 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~t 249 (647)
..+.++.|-+|+||||+.+.++..+...|++||++.--
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D 53 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTD 53 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECC
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 45889999999999999999999999999999988643
No 291
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.84 E-value=0.058 Score=50.54 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=26.1
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEe
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (647)
.++.|.||+|+||||++..+...+-..+..|.+.
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 3678999999999999887777665556566554
No 292
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.83 E-value=0.044 Score=52.64 Aligned_cols=33 Identities=30% Similarity=0.535 Sum_probs=25.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEe
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (647)
.+.+|.||||+||||.+..+...+-. |..++.+
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 46789999999999998877777655 6566544
No 293
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.79 E-value=0.037 Score=52.89 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=19.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
+.+|.|||||||||.+..+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999887777665
No 294
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.76 E-value=0.04 Score=49.73 Aligned_cols=23 Identities=22% Similarity=0.052 Sum_probs=18.9
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
..+|.|+|||||||++..+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999887776654
No 295
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.72 E-value=0.038 Score=53.61 Aligned_cols=23 Identities=26% Similarity=0.586 Sum_probs=19.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
..+|.|||||||||++..+...+
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999887777654
No 296
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.72 E-value=0.033 Score=52.40 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=21.0
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHH
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
...+.+|.||||+||||++..+...+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 35678999999999999887776654
No 297
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=93.68 E-value=0.042 Score=59.14 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=19.2
Q ss_pred CeEEEEcCCCCchHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQ 235 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~ 235 (647)
..+||+||||||||+++-.+...
T Consensus 239 ~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999988777554
No 298
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.68 E-value=0.039 Score=53.05 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
...+|.|||||||||++..+...+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999888877665
No 299
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.63 E-value=0.043 Score=51.82 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=19.9
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQ 235 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~ 235 (647)
..+++|.||+|+||||++..++..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 457889999999999988776654
No 300
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=93.63 E-value=0.063 Score=54.66 Aligned_cols=37 Identities=30% Similarity=0.363 Sum_probs=33.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEecc
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (647)
..+.++.|-+|.||||+.+.++..+.+.|++||++.-
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~ 55 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIST 55 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEEC
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 4678899999999999999999999999999998753
No 301
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.62 E-value=0.032 Score=53.44 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
..+.+|.|||||||||.+..+...+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578899999999999887776553
No 302
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.61 E-value=0.035 Score=59.35 Aligned_cols=24 Identities=38% Similarity=0.578 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
.-+++.||||||||+++..+...+
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999987777654
No 303
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=93.61 E-value=0.06 Score=59.60 Aligned_cols=38 Identities=18% Similarity=0.407 Sum_probs=34.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccc
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAAS 249 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~t 249 (647)
..++++.|.+|+||||+.+.++..+.+.|++||++..-
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D 45 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD 45 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 45789999999999999999999999999999997654
No 304
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.60 E-value=0.034 Score=52.07 Aligned_cols=22 Identities=32% Similarity=0.620 Sum_probs=18.7
Q ss_pred eEEEEcCCCCchHHHHHHHHHH
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQ 235 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~ 235 (647)
+.+|.|||||||||++..+...
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999988777655
No 305
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.57 E-value=0.06 Score=61.56 Aligned_cols=39 Identities=31% Similarity=0.382 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHc--cCCeEEEEcCCCCchHHHHHHHHHHH
Q 006386 198 DHSQKDAISKALS--SKNVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 198 n~~Q~~Av~~~l~--~~~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
.+...+.+..++. .....|+.||||||||+++-.+...+
T Consensus 185 ~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 185 RSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp CHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 3555555666663 34578999999999999887777665
No 306
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=93.57 E-value=0.045 Score=65.81 Aligned_cols=75 Identities=19% Similarity=0.184 Sum_probs=54.4
Q ss_pred CCCeEEccCCCCCCccccEEEEEEeecCC----CCccccCC------------------------CCCceeeeecccccc
Q 006386 558 LKNMEVSTVDGFQGREKEAIIISMVRSNS----KKEVGFLS------------------------DRRRMNVAVTRARRQ 609 (647)
Q Consensus 558 ~~~i~v~Tvd~fQG~E~diVIis~vrs~~----~~~~gfl~------------------------d~rrlnVAlTRAk~~ 609 (647)
.+.|.|+|+|..+|.|+++|++..+.... ...-+|+. +++.+|||+|||+..
T Consensus 585 ~d~V~i~t~~~argl~f~~V~l~G~~eg~~P~~~~~~~~l~~~~R~~l~~~g~~l~~~~~~~~~eer~l~y~altrA~~~ 664 (1166)
T 3u4q_B 585 LDQVFVGNMDLSRMYGTSCTFVLGANDGVLPARPDENGVLSDDDREWLKTIGVELSSGGRERLLDEHFLIYMAFSSPSDR 664 (1166)
T ss_dssp SSCEEEEESSSCCCSSCSEEEEECCBTTTTTTCCCCCSSSCHHHHHHHHHHTCCCCCCSSHHHHHHHHHHHHHHTSCSSE
T ss_pred CCEEEEecCcccccCCCCEEEEeCCCcCCCCCCCCCCCCCCHHHHHHHHhCCCcCCCchHHHHHHhHHHHHHHHhcccCe
Confidence 46899999999999999999998876432 11123322 224489999999999
Q ss_pred eEEEecC-----CccccchHHHHHHHHH
Q 006386 610 CCLVCDT-----ETVSSDGFLKRLIEYF 632 (647)
Q Consensus 610 l~ivG~~-----~~l~~~~~~~~l~~~~ 632 (647)
|++.... ..+..++++..+..++
T Consensus 665 L~lsy~~~~~~~~~~~pS~~l~el~~~~ 692 (1166)
T 3u4q_B 665 LYVSYPIADAEGKTLLPSMIVKRLEELF 692 (1166)
T ss_dssp EEEEEESSCSSSCCCCBCHHHHHHHHHS
T ss_pred EEEEEeccCCCCCccCCCHHHHHHHHHc
Confidence 9998532 3345677888877664
No 307
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.57 E-value=0.045 Score=50.32 Aligned_cols=23 Identities=39% Similarity=0.638 Sum_probs=18.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
.+.|.||+|+||||++..+...+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999887666554
No 308
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.57 E-value=0.042 Score=52.24 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=19.5
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
..+|.|||||||||.+..+...+
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999887777665
No 309
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=93.52 E-value=0.064 Score=56.96 Aligned_cols=43 Identities=19% Similarity=0.412 Sum_probs=38.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVD 254 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd 254 (647)
...++|.||+|||||+++..++.+++..|.+++|.=|......
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchhH
Confidence 4679999999999999998999999999999999999886654
No 310
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.49 E-value=0.039 Score=51.01 Aligned_cols=22 Identities=32% Similarity=0.751 Sum_probs=18.7
Q ss_pred CeEEEEcCCCCchHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIIL 234 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~ 234 (647)
.+++|.||||+||||++..+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 3678999999999999887754
No 311
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.48 E-value=0.042 Score=52.06 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=18.7
Q ss_pred EEEEcCCCCchHHHHHHHHHHH
Q 006386 215 FMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~~l 236 (647)
.+|.|||||||||.+..+...+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5799999999999887777655
No 312
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.44 E-value=0.06 Score=55.84 Aligned_cols=37 Identities=24% Similarity=0.459 Sum_probs=28.7
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHC-CCeEEEec
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKR-GSKILACA 247 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~-~~~ILv~a 247 (647)
..++++|.||+|+||||++..++..+-.. ..+|++.-
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e 172 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 172 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEec
Confidence 45689999999999999999888766544 45666543
No 313
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.44 E-value=0.054 Score=51.87 Aligned_cols=35 Identities=23% Similarity=0.326 Sum_probs=25.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHC----CCeEEEe
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQEVKR----GSKILAC 246 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~----~~~ILv~ 246 (647)
..+.+|.||||+||||.+..+...+-.. |..|.++
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 4578899999999999999888888666 7776554
No 314
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=93.41 E-value=0.16 Score=57.00 Aligned_cols=65 Identities=25% Similarity=0.266 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHHHc---cC-CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHHHHHhccc
Q 006386 196 NLDHSQKDAISKALS---SK-NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPH 263 (647)
Q Consensus 196 ~Ln~~Q~~Av~~~l~---~~-~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~~~ 263 (647)
..+..|..|+..... .. ...++.|.+|||||.+++.++... ++++||++++...+..+.+-|...
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~~~~---~~~~lvv~~~~~~A~~l~~el~~~ 80 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEV---NKPTLVIAHNKTLAGQLYSEFKEF 80 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH---CCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHHHHh---CCCEEEEECCHHHHHHHHHHHHHH
Confidence 457788888775543 22 246789999999999999888664 568999999999999999988765
No 315
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=93.40 E-value=0.077 Score=50.42 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=30.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEecc
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (647)
+++..+-+|+||||+.+.++..+.+.|++||++=|
T Consensus 4 I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~dp 38 (224)
T 1byi_A 4 YFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP 38 (224)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 45556679999999999999999999999998744
No 316
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.40 E-value=0.068 Score=54.89 Aligned_cols=36 Identities=33% Similarity=0.393 Sum_probs=31.2
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEecc
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (647)
..+.|.|+||+||||++-.++..+...+.+|.|++.
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~ 110 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAV 110 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEee
Confidence 467899999999999999999888878888888774
No 317
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.39 E-value=0.093 Score=60.83 Aligned_cols=49 Identities=31% Similarity=0.447 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHc--cCCeEEEEcCCCCchHHHHHHHHHHHHH-------CCCeEEEec
Q 006386 199 HSQKDAISKALS--SKNVFMLHGPPGTGKTTTVVEIILQEVK-------RGSKILACA 247 (647)
Q Consensus 199 ~~Q~~Av~~~l~--~~~~~lI~GpPGTGKT~ti~~~i~~l~~-------~~~~ILv~a 247 (647)
+...+.+..++. ..+..++.||||||||+++-.++..+.. .+.+++.+.
T Consensus 176 ~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 233 (854)
T 1qvr_A 176 DEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ 233 (854)
T ss_dssp HHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred HHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee
Confidence 344444544544 2346799999999999998888887755 356666554
No 318
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.34 E-value=0.053 Score=52.62 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
..++.|.||||+||||++..+...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4688999999999999887777554
No 319
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=93.33 E-value=0.071 Score=54.62 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=33.9
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHH--HCCCeEEEeccc
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQEV--KRGSKILACAAS 249 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~--~~~~~ILv~a~t 249 (647)
..+.++.|-+|+||||+++.++..+. ..|++||++.--
T Consensus 18 ~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D 57 (348)
T 3io3_A 18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTD 57 (348)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 46889999999999999999999999 889999988653
No 320
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.33 E-value=0.079 Score=50.14 Aligned_cols=46 Identities=24% Similarity=0.195 Sum_probs=30.7
Q ss_pred HHHHHHHHHHc--cCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEe
Q 006386 200 SQKDAISKALS--SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (647)
Q Consensus 200 ~Q~~Av~~~l~--~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (647)
.+.+.+...+. ....++|.|+||+||||++..++..+... .++.++
T Consensus 16 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i 63 (221)
T 2wsm_A 16 RLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAM 63 (221)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEE
T ss_pred HHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEE
Confidence 34444444332 24578899999999999998888876443 455544
No 321
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.28 E-value=0.071 Score=52.28 Aligned_cols=36 Identities=25% Similarity=0.472 Sum_probs=27.3
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHC-CCeEEEe
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKR-GSKILAC 246 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~-~~~ILv~ 246 (647)
..++++|.||.|+||||++..++..+-.. ..+|++.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~ 60 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITI 60 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEc
Confidence 45689999999999999998877665433 4566654
No 322
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=93.25 E-value=0.14 Score=51.12 Aligned_cols=34 Identities=21% Similarity=0.201 Sum_probs=28.8
Q ss_pred CeEEEE--cCCCCchHHHHHHHHHHHHHCCCeEEEe
Q 006386 213 NVFMLH--GPPGTGKTTTVVEIILQEVKRGSKILAC 246 (647)
Q Consensus 213 ~~~lI~--GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (647)
-+++.. +-+|+||||+.+.++..+...|++||++
T Consensus 36 ~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlli 71 (298)
T 2oze_A 36 AIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMI 71 (298)
T ss_dssp CEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEE
Confidence 344444 5899999999999999999999999985
No 323
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.25 E-value=0.072 Score=54.40 Aligned_cols=37 Identities=27% Similarity=0.297 Sum_probs=30.7
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEecc
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (647)
..++.|.||||+||||++-.++..+...+.+|.+.+.
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~ 91 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAV 91 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEE
Confidence 4578899999999999998888777766778888764
No 324
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.21 E-value=0.059 Score=49.48 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQ 235 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~ 235 (647)
..++.|.||+|+||||++..+...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 458899999999999988776654
No 325
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.20 E-value=0.041 Score=51.43 Aligned_cols=33 Identities=21% Similarity=0.271 Sum_probs=24.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEe
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (647)
..+.+|.|||||||||++..+...+ .|..++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~~ 36 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI--PANTIKYL 36 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS--CGGGEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH--CCCceEEE
Confidence 3467899999999999988777665 34444443
No 326
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.19 E-value=0.087 Score=49.91 Aligned_cols=44 Identities=16% Similarity=0.238 Sum_probs=32.0
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCC-eEEEe-ccchHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGS-KILAC-AASNIAVDNI 256 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~-~ILv~-a~tn~Avd~l 256 (647)
.+.++.|++|+||||.+..+...+-..|. .+.++ -|+....-+.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ 49 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEK 49 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHH
Confidence 47789999999999999999888887775 55443 3444443333
No 327
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.18 E-value=0.087 Score=60.24 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=26.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEe
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (647)
.+++.||||||||+++..+...+...+..++.+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i 555 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRI 555 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEE
Confidence 589999999999999988888776555555444
No 328
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.15 E-value=0.16 Score=48.95 Aligned_cols=41 Identities=17% Similarity=0.315 Sum_probs=31.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHCCCe-EEEe-ccchHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSK-ILAC-AASNIA 252 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~-ILv~-a~tn~A 252 (647)
..+.+|.||||+||||.+..+...+-..|.. +.++ -|+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~t~ 69 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTL 69 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCCCH
Confidence 4578899999999999999999888888876 4333 444433
No 329
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=93.14 E-value=0.049 Score=52.70 Aligned_cols=31 Identities=32% Similarity=0.353 Sum_probs=28.6
Q ss_pred EEcCCCCchHHHHHHHHHHHHHCCCeEEEec
Q 006386 217 LHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (647)
Q Consensus 217 I~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (647)
|.|-+|+||||+++.++..+.+.|++||++-
T Consensus 5 vs~kGGvGKTt~a~~LA~~la~~g~~VlliD 35 (254)
T 3kjh_A 5 VAGKGGVGKTTVAAGLIKIMASDYDKIYAVD 35 (254)
T ss_dssp EECSSSHHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred EecCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4899999999999999999999999999874
No 330
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.09 E-value=0.093 Score=64.18 Aligned_cols=49 Identities=18% Similarity=0.262 Sum_probs=41.0
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHHHHH
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVER 259 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~r 259 (647)
...+++|.||||+|||+.+..++......|.++++++.-...-...+++
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~~~~a~~ 430 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARK 430 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHH
Confidence 4568999999999999999999999999999999998877655444444
No 331
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.08 E-value=0.079 Score=58.81 Aligned_cols=38 Identities=26% Similarity=0.315 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHH
Q 006386 199 HSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 199 ~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
..-.+.+..++.....++|.|||||||||++..+...+
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 33445566666667789999999999998887666544
No 332
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.07 E-value=0.062 Score=50.21 Aligned_cols=24 Identities=33% Similarity=0.702 Sum_probs=19.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQ 235 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~ 235 (647)
..++.|.||+|+||||++..+...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 458889999999999988766554
No 333
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.03 E-value=0.061 Score=50.33 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=19.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQ 235 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~ 235 (647)
..++.|.||||+||||++..+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457889999999999988666544
No 334
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=93.01 E-value=0.08 Score=51.87 Aligned_cols=35 Identities=20% Similarity=0.382 Sum_probs=30.7
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEec
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (647)
-+++..+-+|+||||+++.++..+.+.|++||++=
T Consensus 20 vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD 54 (262)
T 2ph1_A 20 RIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILD 54 (262)
T ss_dssp EEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 35667788999999999999999999999999863
No 335
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=92.99 E-value=0.057 Score=59.06 Aligned_cols=25 Identities=36% Similarity=0.579 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
...+++.||||||||+++..+...+
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999998887666554
No 336
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=92.99 E-value=0.093 Score=51.27 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=30.7
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEec
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (647)
+++..+-+|+||||+++.++..+...|++||++-
T Consensus 5 I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (263)
T 1hyq_A 5 ITVASGKGGTGKTTITANLGVALAQLGHDVTIVD 38 (263)
T ss_dssp EEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 5677889999999999999999999999999875
No 337
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=92.98 E-value=0.085 Score=54.25 Aligned_cols=38 Identities=24% Similarity=0.375 Sum_probs=33.9
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHH--HCCCeEEEeccc
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQEV--KRGSKILACAAS 249 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~--~~~~~ILv~a~t 249 (647)
..++++.|-+|.||||+.+.++..+. +.|++||++..-
T Consensus 18 ~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D 57 (354)
T 2woj_A 18 HKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTD 57 (354)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 45788999999999999999999999 899999998654
No 338
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.87 E-value=0.033 Score=63.23 Aligned_cols=22 Identities=41% Similarity=0.647 Sum_probs=18.5
Q ss_pred eEEEEcCCCCchHHHHHHHHHH
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQ 235 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~ 235 (647)
-+|++||||||||+++.+++..
T Consensus 240 GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 240 GILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp EEEEECCTTSCHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999988776654
No 339
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=92.84 E-value=0.088 Score=51.24 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=30.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEec
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (647)
+++..+-+|+||||+++.++..+.+.|++||++=
T Consensus 5 i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (260)
T 3q9l_A 5 IVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVID 38 (260)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEE
Confidence 5566788999999999999999999999999863
No 340
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=92.84 E-value=0.09 Score=51.57 Aligned_cols=31 Identities=26% Similarity=0.344 Sum_probs=28.1
Q ss_pred EEEcCCCCchHHHHHHHHHHHHHCCCeEEEe
Q 006386 216 MLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (647)
Q Consensus 216 lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (647)
.|.|-.|+||||+++.++..+.+.|++||++
T Consensus 5 ~vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 5 AIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 3478999999999999999999999999985
No 341
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.84 E-value=0.091 Score=53.75 Aligned_cols=36 Identities=25% Similarity=0.373 Sum_probs=30.5
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEecc
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (647)
..+.|.|+||+||||++..++..+...+.+|.++..
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~ 92 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAV 92 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence 467799999999999999998888778888877653
No 342
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=92.83 E-value=0.095 Score=52.11 Aligned_cols=32 Identities=25% Similarity=0.433 Sum_probs=28.7
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHHCCCeEEEe
Q 006386 215 FMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (647)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (647)
..|.|-+|+||||+++.++..|.+.|++||++
T Consensus 5 Iavs~KGGvGKTT~a~nLA~~La~~G~rVlli 36 (289)
T 2afh_E 5 CAIYGKGGIGKSTTTQNLVAALAEMGKKVMIV 36 (289)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 34479999999999999999999999999986
No 343
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=92.80 E-value=0.11 Score=59.53 Aligned_cols=41 Identities=24% Similarity=0.314 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHc--cCCeEEEEcCCCCchHHHHHHHHHHHHH
Q 006386 198 DHSQKDAISKALS--SKNVFMLHGPPGTGKTTTVVEIILQEVK 238 (647)
Q Consensus 198 n~~Q~~Av~~~l~--~~~~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (647)
.+.+.+.+...+. .....++.||||||||+++-.+...+..
T Consensus 191 r~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 191 REKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp CHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3455555666655 3457899999999999998888877644
No 344
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=92.78 E-value=0.29 Score=54.07 Aligned_cols=67 Identities=19% Similarity=0.165 Sum_probs=53.3
Q ss_pred CCCCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHH--CCCeEEEeccchHHHHHHHHHhc
Q 006386 194 NSNLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVK--RGSKILACAASNIAVDNIVERLV 261 (647)
Q Consensus 194 ~~~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~--~~~~ILv~a~tn~Avd~l~~rl~ 261 (647)
...|++-|+..+.... .....+|.+|.|+|||++++..+...+. ++.+|+++++|...+..+.+.+.
T Consensus 161 ~~~l~p~Q~~i~~~l~-~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~ 229 (592)
T 3cpe_A 161 KVQLRDYQRDMLKIMS-SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTK 229 (592)
T ss_dssp BCCCCHHHHHHHHHHH-HCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHhhc-cccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHH
Confidence 3468999999887653 3578999999999999998876665443 35699999999999888877654
No 345
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.77 E-value=0.092 Score=57.19 Aligned_cols=49 Identities=16% Similarity=0.291 Sum_probs=36.9
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHHHHHh
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERL 260 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl 260 (647)
...+++|.|||||||||.+..++..+...|.+++++++-+.. ..+..+.
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~-~~l~~~~ 328 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESR-AQLLRNA 328 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCH-HHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCH-HHHHHHH
Confidence 456899999999999999998888777678888777765543 3444443
No 346
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=92.75 E-value=0.094 Score=50.26 Aligned_cols=35 Identities=34% Similarity=0.522 Sum_probs=30.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEecc
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (647)
+++..+-+|+||||+.+.++..+.+.|++||++-.
T Consensus 5 i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~ 39 (237)
T 1g3q_A 5 ISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDG 39 (237)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 45667789999999999999999999999998754
No 347
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=92.73 E-value=0.049 Score=58.62 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=18.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
-++|.||||||||+++..+...+
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999887766543
No 348
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.72 E-value=0.096 Score=52.59 Aligned_cols=34 Identities=29% Similarity=0.403 Sum_probs=29.9
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEec
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (647)
+..|.|-+|+||||+++.++..|.+.|++||++-
T Consensus 43 vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD 76 (307)
T 3end_A 43 VFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76 (307)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4445599999999999999999999999999873
No 349
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.70 E-value=0.09 Score=64.31 Aligned_cols=50 Identities=20% Similarity=0.283 Sum_probs=41.5
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHHHHHh
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERL 260 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl 260 (647)
...+++|.||||||||+.+..++...+..|.++++++.....-+...+++
T Consensus 33 ~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~~~~l 82 (1706)
T 3cmw_A 33 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKL 82 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHHHHhh
Confidence 35689999999999999999999999999999999988776555554443
No 350
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.67 E-value=0.075 Score=50.57 Aligned_cols=24 Identities=29% Similarity=0.446 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
....|.|||||||||++..+...+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999887666543
No 351
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.66 E-value=0.047 Score=49.74 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=17.7
Q ss_pred CCeEEEEcCCCCchHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVE 231 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~ 231 (647)
..++.|.||+|+||||++..
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 45789999999999999876
No 352
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.58 E-value=0.075 Score=49.14 Aligned_cols=23 Identities=30% Similarity=0.660 Sum_probs=18.8
Q ss_pred CeEEEEcCCCCchHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQ 235 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~ 235 (647)
.+.+|.||+|+||||++..++..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 35789999999999988766554
No 353
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.49 E-value=0.066 Score=50.21 Aligned_cols=21 Identities=33% Similarity=0.313 Sum_probs=17.2
Q ss_pred eEEEEcCCCCchHHHHHHHHH
Q 006386 214 VFMLHGPPGTGKTTTVVEIIL 234 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~ 234 (647)
+..|.|||||||||++..+..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999998866643
No 354
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.48 E-value=0.078 Score=50.47 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=22.4
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHH
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQEV 237 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~ 237 (647)
...++.|.||+|+||||++..++..+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999988876544
No 355
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=92.41 E-value=0.12 Score=48.81 Aligned_cols=32 Identities=28% Similarity=0.264 Sum_probs=28.7
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEe
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (647)
+++..+-.|+||||+.+.++..+.+.| +||++
T Consensus 3 I~v~s~KGGvGKTT~a~~LA~~la~~g-~Vlli 34 (209)
T 3cwq_A 3 ITVASFKGGVGKTTTAVHLSAYLALQG-ETLLI 34 (209)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEE
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEE
Confidence 456788999999999999999999999 99985
No 356
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.40 E-value=0.14 Score=48.28 Aligned_cols=38 Identities=24% Similarity=0.310 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHH
Q 006386 197 LDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQ 235 (647)
Q Consensus 197 Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~ 235 (647)
-+-.|..++..+- ...++.|.||.|+||||++..+.-.
T Consensus 8 k~~g~~~~l~~i~-~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 8 KTLGQKHYVDAID-TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSHHHHHHHHHHH-HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCHhHHHHHHhcc-CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3556777887764 4678999999999999988666544
No 357
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.37 E-value=0.13 Score=48.93 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=32.4
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHH-CCCeEEE-e-ccchHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVK-RGSKILA-C-AASNIAVDN 255 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~-~~~~ILv-~-a~tn~Avd~ 255 (647)
.+.+|.|++|+||||.+..+...+-. .|..+.+ + -|.....-+
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~ 67 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNE 67 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHH
Confidence 36778999999999999999888877 7877776 3 344444333
No 358
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.36 E-value=0.14 Score=47.80 Aligned_cols=34 Identities=26% Similarity=0.393 Sum_probs=29.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEec
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (647)
+..|.|+.|+||||.+..+...|-..|.+++++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4568999999999999999888888898887764
No 359
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=92.30 E-value=0.14 Score=48.06 Aligned_cols=28 Identities=29% Similarity=0.496 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCC
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRG 240 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~ 240 (647)
.++.|.||+|+||||++..+...+-..|
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~~~g 50 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALSAQG 50 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 4678999999999998876665554334
No 360
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=92.27 E-value=0.19 Score=49.93 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=28.7
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEec
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (647)
+++..+-||.||||+.+.++..+...|++||++-
T Consensus 95 I~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 128 (286)
T 3la6_A 95 LMMTGVSPSIGMTFVCANLAAVISQTNKRVLLID 128 (286)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence 3444556999999999999999999999999883
No 361
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.19 E-value=0.072 Score=49.18 Aligned_cols=24 Identities=29% Similarity=0.595 Sum_probs=19.3
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
.++.|.||.|+||||++-.+...+
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 467899999999999887666543
No 362
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=92.18 E-value=0.078 Score=54.79 Aligned_cols=36 Identities=14% Similarity=0.295 Sum_probs=32.4
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEecc
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (647)
.+.++.|..|+||||+.+.++..+...|++||++..
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 367889999999999999999999999999988765
No 363
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=92.15 E-value=0.094 Score=54.78 Aligned_cols=39 Identities=18% Similarity=0.129 Sum_probs=28.7
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHH------CCCeEEEeccc
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQEVK------RGSKILACAAS 249 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~------~~~~ILv~a~t 249 (647)
...+++|.||||+||||.+..++..... .+.+++++...
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 4568999999999999999887755543 23566666543
No 364
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=92.10 E-value=0.12 Score=49.86 Aligned_cols=35 Identities=11% Similarity=0.168 Sum_probs=30.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHC-CCeEEEecc
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQEVKR-GSKILACAA 248 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~-~~~ILv~a~ 248 (647)
+++..+-+|+||||+++.++..+... |++||++-.
T Consensus 7 I~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~ 42 (245)
T 3ea0_A 7 FGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDI 42 (245)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEEC
T ss_pred EEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEEC
Confidence 45667789999999999999999998 999998854
No 365
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.05 E-value=0.1 Score=53.97 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=20.8
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHH
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQ 235 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~ 235 (647)
....++|.|||||||||++..+...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3458899999999999988777754
No 366
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.03 E-value=0.15 Score=48.28 Aligned_cols=46 Identities=26% Similarity=0.286 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHc--cCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEE
Q 006386 199 HSQKDAISKALS--SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILA 245 (647)
Q Consensus 199 ~~Q~~Av~~~l~--~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv 245 (647)
+.|.+.++..+. .....+|.|+||+|||+++..++..+... .++.+
T Consensus 23 ~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~ 70 (226)
T 2hf9_A 23 KRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIAC 70 (226)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEE
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEE
Confidence 444555554443 23456788999999999999988876544 44433
No 367
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=91.93 E-value=0.14 Score=52.63 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=22.2
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHH
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
...++.|.|||||||||.+..++...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999998887765
No 368
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.82 E-value=0.11 Score=48.46 Aligned_cols=24 Identities=17% Similarity=0.448 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
++..|.|||||||||++..+...+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 367899999999999887776554
No 369
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.78 E-value=0.13 Score=63.89 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=39.4
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHH
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNI 256 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l 256 (647)
....++|.||||||||+.+.+++...++.|.++++++..+..-+-.
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~ 1125 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY 1125 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHH
Confidence 4568999999999999999999999999999999999876544333
No 370
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=91.77 E-value=0.16 Score=51.19 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=32.2
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEec
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (647)
.+.-|.|=-|.|||||.+.+...|.+.|+|||++=
T Consensus 49 KVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID 83 (314)
T 3fwy_A 49 KVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 83 (314)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47778899999999999999999999999999884
No 371
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.73 E-value=0.11 Score=49.93 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
.-+..|.||||+||||++..+...+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999887766554
No 372
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.69 E-value=0.11 Score=60.10 Aligned_cols=32 Identities=22% Similarity=0.440 Sum_probs=24.2
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEE
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKIL 244 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~IL 244 (647)
+.++|.||||||||+++..+...+...+..++
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i 620 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMI 620 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEE
Confidence 36899999999999988877777654444433
No 373
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.59 E-value=0.14 Score=47.36 Aligned_cols=33 Identities=30% Similarity=0.417 Sum_probs=24.9
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEec
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (647)
..+.|.||+|+||||++..++..+...| |.+..
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~~~G--i~~~g 34 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLKSSG--VPVDG 34 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTT--CCCEE
T ss_pred CEEEEECCCCChHHHHHHHHHhhcccCC--EEEcC
Confidence 3578999999999999988777766445 54433
No 374
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.58 E-value=0.099 Score=48.85 Aligned_cols=21 Identities=29% Similarity=0.234 Sum_probs=17.6
Q ss_pred eEEEEcCCCCchHHHHHHHHH
Q 006386 214 VFMLHGPPGTGKTTTVVEIIL 234 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~ 234 (647)
...|.|||||||||++..+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 467999999999998866655
No 375
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.53 E-value=0.098 Score=48.62 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQ 235 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~ 235 (647)
...+|.||+|+|||+++.+++..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999998887654
No 376
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.53 E-value=0.096 Score=50.97 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=18.7
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
+..|.|||||||||+...+...+
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57799999999999887666544
No 377
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.47 E-value=0.091 Score=52.96 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
.+.+|.||+|||||++...++..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 368899999999999988887654
No 378
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.43 E-value=0.062 Score=61.04 Aligned_cols=30 Identities=27% Similarity=0.434 Sum_probs=21.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEe
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (647)
-+|++||||||||.++.+++..+ +...+.+
T Consensus 513 gvLl~GPPGtGKT~lAkaiA~e~---~~~f~~v 542 (806)
T 3cf2_A 513 GVLFYGPPGCGKTLLAKAIANEC---QANFISI 542 (806)
T ss_dssp CCEEESSTTSSHHHHHHHHHHTT---TCEEEEC
T ss_pred eEEEecCCCCCchHHHHHHHHHh---CCceEEe
Confidence 37899999999998776666553 4444433
No 379
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.42 E-value=0.12 Score=48.24 Aligned_cols=25 Identities=28% Similarity=0.578 Sum_probs=20.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
...+.|.||+|+||||++-.+...+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4578899999999999987766543
No 380
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.36 E-value=0.14 Score=47.75 Aligned_cols=24 Identities=21% Similarity=0.487 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQ 235 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~ 235 (647)
..+++|.||+|+||||++..++..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 468899999999999988777654
No 381
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.34 E-value=0.1 Score=52.07 Aligned_cols=22 Identities=36% Similarity=0.595 Sum_probs=18.5
Q ss_pred CeEEEEcCCCCchHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIIL 234 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~ 234 (647)
.+.+|.|||||||||.+..+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999998877665
No 382
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=91.30 E-value=0.11 Score=50.53 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=29.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEec
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (647)
+++..+-+|+||||+.+.++..+.+.|++||++-
T Consensus 9 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD 42 (257)
T 1wcv_1 9 IALANQKGGVGKTTTAINLAAYLARLGKRVLLVD 42 (257)
T ss_dssp EEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEE
Confidence 3444578899999999999999999999999873
No 383
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.29 E-value=0.13 Score=47.77 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=18.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHH
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQ 235 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~ 235 (647)
+..|.|+|||||||+...+...
T Consensus 14 iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5679999999999988766654
No 384
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=91.23 E-value=0.14 Score=52.98 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=30.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEecc
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (647)
+++..|-+|+||||+++.++..+.+.|++||++-.
T Consensus 146 Iav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~ 180 (373)
T 3fkq_A 146 VIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNI 180 (373)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred EEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 55667799999999999999999999999998864
No 385
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=91.17 E-value=0.18 Score=57.51 Aligned_cols=23 Identities=35% Similarity=0.640 Sum_probs=20.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
.+++.||||||||+++..+...+
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 58999999999999888777665
No 386
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=91.17 E-value=0.12 Score=50.70 Aligned_cols=33 Identities=18% Similarity=0.251 Sum_probs=28.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEec
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (647)
+++..+-+|+||||+++.++..+. .|++||++-
T Consensus 30 I~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD 62 (267)
T 3k9g_A 30 ITIASIKGGVGKSTSAIILATLLS-KNNKVLLID 62 (267)
T ss_dssp EEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred EEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEE
Confidence 455678899999999999999999 999999873
No 387
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.13 E-value=0.11 Score=48.68 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=17.7
Q ss_pred CeEEEEcCCCCchHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIIL 234 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~ 234 (647)
.++.|.||||+||||++..+..
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999998766553
No 388
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=91.09 E-value=0.1 Score=53.85 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=30.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEec
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (647)
+++..+-+|+||||+++.++..+...|++||++=
T Consensus 4 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID 37 (361)
T 3pg5_A 4 ISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVD 37 (361)
T ss_dssp EEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4566788999999999999999999999999883
No 389
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.91 E-value=0.15 Score=45.23 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQEV 237 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~ 237 (647)
.++.+|.||.|+|||+++-++...+.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l~ 48 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 56899999999999999877665543
No 390
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=90.88 E-value=0.16 Score=50.38 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=29.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEe
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (647)
+++..+-.|+||||+.+.++..|.+.|++||++
T Consensus 7 I~v~s~KGGvGKTT~a~nLA~~La~~G~~Vlli 39 (286)
T 2xj4_A 7 IVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVI 39 (286)
T ss_dssp EEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 455667899999999999999999999999985
No 391
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=90.71 E-value=0.52 Score=48.44 Aligned_cols=63 Identities=14% Similarity=0.138 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHc--cCCeEEEEcCCCCchHHHHHHHHHHHHHCCC--e--EEEeccchHHHHHHHHHh
Q 006386 198 DHSQKDAISKALS--SKNVFMLHGPPGTGKTTTVVEIILQEVKRGS--K--ILACAASNIAVDNIVERL 260 (647)
Q Consensus 198 n~~Q~~Av~~~l~--~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~--~--ILv~a~tn~Avd~l~~rl 260 (647)
-+.-.++|...+. ...-.+|.||||+|||+++..++..+.+.+. . ++.+.-...-|.++.+.+
T Consensus 158 ~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~~ 226 (422)
T 3ice_A 158 EDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 226 (422)
T ss_dssp THHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTC
T ss_pred ccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHHh
Confidence 3455567776654 3467899999999999999887777655432 2 233455555666665544
No 392
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.62 E-value=0.17 Score=49.21 Aligned_cols=25 Identities=28% Similarity=0.208 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
.....|.||||+||||++..+...+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5688999999999999887776654
No 393
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=90.59 E-value=0.11 Score=57.43 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=17.3
Q ss_pred eEEEEcCCCCchHHHHHHHHH
Q 006386 214 VFMLHGPPGTGKTTTVVEIIL 234 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~ 234 (647)
.+|+.||||||||+++..+..
T Consensus 329 ~vLL~GppGtGKT~LAr~la~ 349 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISR 349 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSST
T ss_pred ceEEECCCchHHHHHHHHHHH
Confidence 699999999999987755543
No 394
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.58 E-value=0.068 Score=51.21 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=15.4
Q ss_pred cCCeEEEEcCCCCchHHHHHHHH
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEII 233 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i 233 (647)
...++.|.||+|+||||++..+.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 35688899999999999987666
No 395
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.55 E-value=0.25 Score=49.48 Aligned_cols=34 Identities=35% Similarity=0.543 Sum_probs=25.2
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEec
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA 247 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a 247 (647)
....+.|.||+|+||||.+..+...+ .| +|++..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~--~G-~I~~~v 158 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL--GG-SVLSFA 158 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH--TC-EEECGG
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc--Cc-eEEEEe
Confidence 45688999999999998887766655 44 665433
No 396
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.51 E-value=0.28 Score=49.24 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=23.2
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHH--HCCCeEEEe
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEV--KRGSKILAC 246 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~--~~~~~ILv~ 246 (647)
.++.|.||+|+||||++..+...+- ..+..|.++
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi 116 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELI 116 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEE
Confidence 4677999999999998865554442 123456663
No 397
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=90.46 E-value=0.15 Score=48.36 Aligned_cols=28 Identities=21% Similarity=0.459 Sum_probs=21.2
Q ss_pred HccCCeEEEEcCCCCchHHHHHHHHHHH
Q 006386 209 LSSKNVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 209 l~~~~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
+....++.|.||.|+||||++-.++..+
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3345688999999999999887766543
No 398
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=90.46 E-value=0.15 Score=47.44 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=17.8
Q ss_pred CeEEEEcCCCCchHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIIL 234 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~ 234 (647)
.+..|.|+|||||||++..+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999998766554
No 399
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=90.45 E-value=0.16 Score=47.58 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=18.2
Q ss_pred CeEEEEcCCCCchHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQ 235 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~ 235 (647)
.++.|.||+|+||||++..+...
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 36779999999999887655544
No 400
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=90.41 E-value=0.26 Score=49.67 Aligned_cols=33 Identities=15% Similarity=0.191 Sum_probs=22.6
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHH---CCCeEEEec
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQEVK---RGSKILACA 247 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~---~~~~ILv~a 247 (647)
++-|.||+|+||||++..+. .++. .+.+|.+++
T Consensus 94 iigI~GpsGSGKSTl~~~L~-~ll~~~~~~~~v~~i~ 129 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLK-ALLSRWPDHPNVEVIT 129 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHH-HHHTTSTTCCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHH-HHhcccCCCCeEEEEe
Confidence 67899999999999875554 4443 233555544
No 401
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=90.23 E-value=0.23 Score=44.97 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=18.8
Q ss_pred eEEEEcCCCCchHHHHHHHHH
Q 006386 214 VFMLHGPPGTGKTTTVVEIIL 234 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~ 234 (647)
-++|.|++|+||||++.+++.
T Consensus 18 gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999988876
No 402
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=90.21 E-value=0.23 Score=50.62 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=19.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
..+|.||||+||||++..+...+
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 37899999999999987776654
No 403
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.16 E-value=0.34 Score=52.67 Aligned_cols=40 Identities=15% Similarity=0.137 Sum_probs=28.3
Q ss_pred cCCeEEEEcCCCCchHHHHHHH-HHHHHHCCCeEEEeccch
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEI-ILQEVKRGSKILACAASN 250 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~-i~~l~~~~~~ILv~a~tn 250 (647)
...+++|.||||+||||.+..+ +.-+...+...+.+....
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 4568999999999999999886 455666454444444433
No 404
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.11 E-value=0.17 Score=47.87 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=17.3
Q ss_pred eEEEEcCCCCchHHHHHHHHH
Q 006386 214 VFMLHGPPGTGKTTTVVEIIL 234 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~ 234 (647)
+..|.|+|||||||++..+..
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999998766543
No 405
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=89.97 E-value=0.22 Score=63.85 Aligned_cols=33 Identities=33% Similarity=0.540 Sum_probs=25.5
Q ss_pred HHHHHHHccCCeEEEEcCCCCchHHHHHHHHHH
Q 006386 203 DAISKALSSKNVFMLHGPPGTGKTTTVVEIILQ 235 (647)
Q Consensus 203 ~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~ 235 (647)
..+..++.....+|+.||||||||.++..++..
T Consensus 1258 ~ll~~~l~~~~~vLL~GPpGtGKT~la~~~l~~ 1290 (2695)
T 4akg_A 1258 KIFYDLLNSKRGIILCGPPGSGKTMIMNNALRN 1290 (2695)
T ss_dssp HHHHHHHHHTCEEEEECSTTSSHHHHHHHHHHS
T ss_pred HHHHHHHHCCCeEEEECCCCCCHHHHHHHHHhc
Confidence 345555556678999999999999998776654
No 406
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=89.95 E-value=0.13 Score=52.20 Aligned_cols=34 Identities=26% Similarity=0.368 Sum_probs=25.2
Q ss_pred HHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHH
Q 006386 202 KDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQ 235 (647)
Q Consensus 202 ~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~ 235 (647)
.+-+...+.....++|.||.|+||||++..++..
T Consensus 161 l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 161 ISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp HHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGG
T ss_pred HhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3445555555679999999999999987666544
No 407
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=89.91 E-value=0.2 Score=52.40 Aligned_cols=52 Identities=15% Similarity=0.094 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHc-------c---CCeEEEEcCCCCchHHHHHHHHHHHH------HCCCeEEEecc
Q 006386 197 LDHSQKDAISKALS-------S---KNVFMLHGPPGTGKTTTVVEIILQEV------KRGSKILACAA 248 (647)
Q Consensus 197 Ln~~Q~~Av~~~l~-------~---~~~~lI~GpPGTGKT~ti~~~i~~l~------~~~~~ILv~a~ 248 (647)
++.+|...+...+. . .-+++..|-.|+||||+.+.++..+. ..|++||++=-
T Consensus 84 ~~~~~i~~~~~~~~~~~~~~~~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~ 151 (398)
T 3ez2_A 84 MSIQNIIDIYEHRGVPKYRDRYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDL 151 (398)
T ss_dssp BCHHHHHHHHHHTTCCCGGGTCCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEE
T ss_pred CCHHHHHHHHHHhcccccCcCCCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeC
Confidence 46777777776542 0 12566778999999999999999988 46899988743
No 408
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=89.89 E-value=0.16 Score=51.47 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
.+.+|.||+|||||+++..++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 478899999999999998887765
No 409
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=89.88 E-value=0.18 Score=51.96 Aligned_cols=32 Identities=25% Similarity=0.489 Sum_probs=24.5
Q ss_pred HHHHHHccCCeEEEEcCCCCchHHHHHHHHHH
Q 006386 204 AISKALSSKNVFMLHGPPGTGKTTTVVEIILQ 235 (647)
Q Consensus 204 Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~ 235 (647)
-+...+.....++|.||.|+||||++..++..
T Consensus 167 ~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 167 FLRRAVQLERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp HHHHHHHTTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred HHHHHHhcCCEEEEECCCCCCHHHHHHHHHhc
Confidence 34444556679999999999999988776654
No 410
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=89.82 E-value=0.17 Score=48.37 Aligned_cols=22 Identities=36% Similarity=0.458 Sum_probs=18.0
Q ss_pred EEEEcCCCCchHHHHHHHHHHH
Q 006386 215 FMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~~l 236 (647)
.-|.||||+||||....+...+
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred eeeECCCCCCHHHHHHHHHHHh
Confidence 4589999999999887776654
No 411
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=89.71 E-value=0.47 Score=44.47 Aligned_cols=40 Identities=20% Similarity=0.428 Sum_probs=28.3
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEec-cchHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACA-ASNIAV 253 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a-~tn~Av 253 (647)
.+..|.|+.|+||||.+..+...| ..|.+++.+. |+....
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L-~~~~~v~~~~eP~~t~~ 43 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL-VKDYDVIMTREPGGVPT 43 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH-TTTSCEEEEESSTTCHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH-HCCCCEEEeeCCCCChH
Confidence 367899999999999887776666 4576766653 444333
No 412
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=89.61 E-value=0.17 Score=50.11 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=17.5
Q ss_pred eEEEEcCCCCchHHHHHHHH
Q 006386 214 VFMLHGPPGTGKTTTVVEII 233 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i 233 (647)
+..|.|||||||||++..+.
T Consensus 77 iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999887766
No 413
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=89.57 E-value=0.2 Score=45.67 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=19.7
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQ 235 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~ 235 (647)
.++.+|.||.|+|||+++-++...
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999888665544
No 414
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=89.54 E-value=0.2 Score=48.67 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
..+..|.||+||||||++..+...|
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578899999999999887776443
No 415
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.51 E-value=0.15 Score=50.96 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
..+.+|.||+|+|||+++..++..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3578899999999999998887664
No 416
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.50 E-value=0.13 Score=54.05 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=19.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQ 235 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~ 235 (647)
..+.+|.|||||||||++..+...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 457889999999999988776543
No 417
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=89.45 E-value=0.14 Score=58.73 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=18.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQ 235 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~ 235 (647)
..++|+||||||||+++..+...
T Consensus 239 ~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 239 RGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CEEEECSCTTSSHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999887666543
No 418
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=89.45 E-value=0.31 Score=53.69 Aligned_cols=57 Identities=16% Similarity=0.136 Sum_probs=36.6
Q ss_pred CCCCCCCCCHHHHHHHHHHH--ccCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEe
Q 006386 190 FKPFNSNLDHSQKDAISKAL--SSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (647)
Q Consensus 190 ~~~~~~~Ln~~Q~~Av~~~l--~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (647)
+.|.....+.+++.+...-- ....+.+|.|+|||||||++..+...|...|..++.+
T Consensus 28 ~~~~~~~v~~~~r~~~~~~~~~~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~l 86 (630)
T 1x6v_B 28 VTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 86 (630)
T ss_dssp ------CCCHHHHHHHSSSSSSCCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccccccCCCHHHHHHHhCCCccCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 34444567888777653210 0123678999999999999999888887777666554
No 419
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=89.43 E-value=0.22 Score=46.66 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=20.6
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHH
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQ 235 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~ 235 (647)
...++.|.||.|+||||++-.+...
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4668999999999999988766544
No 420
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=89.41 E-value=0.22 Score=48.17 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=19.0
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
.++-|.||.|+||||++..+...+
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 467799999999999887665544
No 421
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=89.36 E-value=0.22 Score=47.11 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQEV 237 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~ 237 (647)
..+.++.||+|+||||.+..+...+-
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35788999999999999888777663
No 422
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=89.30 E-value=0.17 Score=51.16 Aligned_cols=35 Identities=34% Similarity=0.441 Sum_probs=26.7
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccc
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAAS 249 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~t 249 (647)
++++|.|+-|+||||++-.+.... .+.+|.|+.+.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~--~~~~~aVi~~d 39 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ--HGYKIAVIENE 39 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC--CCCCEEEECSS
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc--CCCcEEEEEec
Confidence 578999999999999987766542 56677666653
No 423
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.27 E-value=0.17 Score=50.42 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
.+.+|.||+|+|||+++..++..+
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCccCHHHHHHHHHHhC
Confidence 467899999999999998887664
No 424
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.11 E-value=0.28 Score=47.04 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=19.3
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
....|.|||||||||++..+...+
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999887666544
No 425
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=89.04 E-value=0.13 Score=59.15 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
..+++.||||||||+++..++..+
T Consensus 512 ~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 512 KGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred ceeEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999887776654
No 426
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=89.02 E-value=0.24 Score=46.34 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQEV 237 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~ 237 (647)
.++.+|.||.|+|||+++-++...+.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 57999999999999999877665554
No 427
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=89.01 E-value=0.25 Score=46.95 Aligned_cols=25 Identities=16% Similarity=0.573 Sum_probs=20.3
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHH
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQ 235 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~ 235 (647)
...++.|.||.|+||||++-.+...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3568899999999999988765544
No 428
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=88.96 E-value=0.14 Score=51.72 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
.+.+|.||+|||||++...++..+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 478999999999999998887654
No 429
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=88.84 E-value=0.23 Score=51.47 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
..+.+|.||+|||||+++..++..+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3578899999999999998888775
No 430
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=88.67 E-value=0.27 Score=48.95 Aligned_cols=26 Identities=27% Similarity=0.520 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVK 238 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (647)
.++.|.||+|+||||++..+...+-.
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 35679999999999988766665543
No 431
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=88.63 E-value=0.2 Score=44.85 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=21.8
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHH
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
...++.|.||-|+||||.+..++..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34588899999999999988777766
No 432
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=88.59 E-value=0.56 Score=51.08 Aligned_cols=42 Identities=26% Similarity=0.279 Sum_probs=31.9
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHHHHHh
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERL 260 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl 260 (647)
+.++.|+|||||||++..+...+-..|.++.++. .|.+...+
T Consensus 374 ~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld-----~D~ir~~l 415 (546)
T 2gks_A 374 CVWLTGLPCAGKSTIAEILATMLQARGRKVTLLD-----GDVVRTHL 415 (546)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC-----HHHHHHHT
T ss_pred EEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEEC-----chHhhhhh
Confidence 5678999999999998888887777787776665 45555443
No 433
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=88.40 E-value=0.38 Score=53.09 Aligned_cols=37 Identities=27% Similarity=0.400 Sum_probs=32.9
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEecc
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAA 248 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (647)
..+.++.|.+|+|||++.+.++..+.+.|.+++++..
T Consensus 327 ~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~ 363 (589)
T 1ihu_A 327 HGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTS 363 (589)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeC
Confidence 3577889999999999999999999999999999743
No 434
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=88.39 E-value=0.37 Score=50.40 Aligned_cols=35 Identities=23% Similarity=0.247 Sum_probs=25.7
Q ss_pred HHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHH
Q 006386 200 SQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIIL 234 (647)
Q Consensus 200 ~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~ 234 (647)
..++++..+....+++.|.||+|+||||++-.+.-
T Consensus 57 ~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 57 AISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred hhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 34555555555556889999999999998876554
No 435
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.30 E-value=0.28 Score=48.82 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEe
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (647)
.+..|.||+||||||++..+...+-..+..+.++
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI 39 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSI 39 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEe
Confidence 4678999999999999887776554334434333
No 436
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=88.20 E-value=0.19 Score=52.72 Aligned_cols=51 Identities=18% Similarity=0.152 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHc--------c--CCeEEEEcCCCCchHHHHHHHHHHHH------HCCCeEEEec
Q 006386 197 LDHSQKDAISKALS--------S--KNVFMLHGPPGTGKTTTVVEIILQEV------KRGSKILACA 247 (647)
Q Consensus 197 Ln~~Q~~Av~~~l~--------~--~~~~lI~GpPGTGKT~ti~~~i~~l~------~~~~~ILv~a 247 (647)
++.+|...+..... . .-++++.|-+|+||||+.+.++..|. ..|++||++=
T Consensus 87 ~~~~~v~~~~~~~~~~~~r~~~~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD 153 (403)
T 3ez9_A 87 LTIQNVIDIYAHRKIPKYRDIHKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVID 153 (403)
T ss_dssp BCHHHHHHHHHHTTCCCHHHHSCSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEE
T ss_pred cCHHHHHHHHHHhccCCcCCCCCCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEe
Confidence 57778777765421 1 12566778999999999999999988 6789998874
No 437
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=88.03 E-value=0.25 Score=46.56 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=18.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQ 235 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~ 235 (647)
-+..|.|||||||||+...+...
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36789999999999988666554
No 438
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=88.00 E-value=0.44 Score=51.61 Aligned_cols=31 Identities=23% Similarity=0.213 Sum_probs=24.5
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCCCeE
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRGSKI 243 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~I 243 (647)
.++++.|+||+||||+...+...+-..+...
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~ 66 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPT 66 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCe
Confidence 4778999999999999988887774444443
No 439
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=87.90 E-value=0.31 Score=49.07 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=18.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
.++.|.||+|+||||++..+...+
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHhhc
Confidence 467899999999998876555443
No 440
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=87.90 E-value=0.56 Score=52.18 Aligned_cols=62 Identities=11% Similarity=-0.068 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHHHHHhc
Q 006386 197 LDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLV 261 (647)
Q Consensus 197 Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~ 261 (647)
.-+.|.-..-.... + -+..=..|+|||.++.-.+..-.-.|+.|.|+|+|.-.+..-.+-+.
T Consensus 76 ~~dvQligg~~L~~--G-~iaEM~TGEGKTLva~lp~~lnAL~G~~vhVvT~ndyLA~rdae~m~ 137 (822)
T 3jux_A 76 PFDVQVMGGIALHE--G-KVAEMKTGEGKTLAATMPIYLNALIGKGVHLVTVNDYLARRDALWMG 137 (822)
T ss_dssp CCHHHHHHHHHHHT--T-CEEECCTTSCHHHHTHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhC--C-ChhhccCCCCccHHHHHHHHHHHhcCCceEEEeccHHHHHhHHHHHH
Confidence 34566655443332 3 26677799999997665554334569999999999987765555443
No 441
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=87.87 E-value=0.25 Score=47.56 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=19.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
+.+|.|++|+||||.+..+...+
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 57899999999999887776654
No 442
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=87.87 E-value=0.53 Score=48.36 Aligned_cols=38 Identities=26% Similarity=0.236 Sum_probs=28.9
Q ss_pred HHHHHHHHc--cCCeEEEEcCCCCchHHHHHHHHHHHHHC
Q 006386 202 KDAISKALS--SKNVFMLHGPPGTGKTTTVVEIILQEVKR 239 (647)
Q Consensus 202 ~~Av~~~l~--~~~~~lI~GpPGTGKT~ti~~~i~~l~~~ 239 (647)
.+||....- ..+-.+|.||||||||+++..++.+....
T Consensus 163 iraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~ 202 (427)
T 3l0o_A 163 TRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAEN 202 (427)
T ss_dssp HHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred chhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhc
Confidence 456766543 34568999999999999998888877653
No 443
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=87.78 E-value=0.31 Score=44.29 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=22.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCC
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRG 240 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~ 240 (647)
..+.|.||.|+||||++..++..+-..|
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g 30 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERG 30 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcC
Confidence 4678999999999998887777766554
No 444
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=87.76 E-value=0.42 Score=52.69 Aligned_cols=37 Identities=27% Similarity=0.403 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHc----cCCeEEEEcCCCCchHHHHHHHHHH
Q 006386 199 HSQKDAISKALS----SKNVFMLHGPPGTGKTTTVVEIILQ 235 (647)
Q Consensus 199 ~~Q~~Av~~~l~----~~~~~lI~GpPGTGKT~ti~~~i~~ 235 (647)
+...+.+...+. ..++++|+||+|.|||+.+.+....
T Consensus 130 ~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 130 KKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp HHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhc
Confidence 445556666664 2458899999999999999887643
No 445
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=87.13 E-value=0.55 Score=47.95 Aligned_cols=46 Identities=17% Similarity=0.103 Sum_probs=30.4
Q ss_pred HHHHHHHHc--cCCeEEEEcCCCCchHHHHHHHHHHHHHCCC-eEEEecc
Q 006386 202 KDAISKALS--SKNVFMLHGPPGTGKTTTVVEIILQEVKRGS-KILACAA 248 (647)
Q Consensus 202 ~~Av~~~l~--~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~-~ILv~a~ 248 (647)
..||...+. ....+.|.||+|+||||++..++.. ..... .|.++..
T Consensus 59 ~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~-~~~~~g~i~~~G~ 107 (347)
T 2obl_A 59 VRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNG-ASADIIVLALIGE 107 (347)
T ss_dssp CHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHH-SCCSEEEEEEESC
T ss_pred CEEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcC-CCCCEEEEEEecc
Confidence 357777754 4568899999999999996655554 33332 3444443
No 446
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=86.33 E-value=0.71 Score=48.81 Aligned_cols=35 Identities=23% Similarity=0.300 Sum_probs=27.3
Q ss_pred HHHHHHc--cCCeEEEEcCCCCchHHHHHHHHHHHHH
Q 006386 204 AISKALS--SKNVFMLHGPPGTGKTTTVVEIILQEVK 238 (647)
Q Consensus 204 Av~~~l~--~~~~~lI~GpPGTGKT~ti~~~i~~l~~ 238 (647)
+|..... ..+..+|.||||+|||+.+..++.....
T Consensus 141 ~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~ 177 (473)
T 1sky_E 141 VVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQ 177 (473)
T ss_dssp HHHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccCCEEEEECCCCCCccHHHHHHHhhhhh
Confidence 5555432 3567899999999999999999887654
No 447
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=85.84 E-value=0.75 Score=43.87 Aligned_cols=35 Identities=23% Similarity=0.250 Sum_probs=30.2
Q ss_pred eEEEEcC-CCCchHHHHHHHHHHHHHCCCeEEEecc
Q 006386 214 VFMLHGP-PGTGKTTTVVEIILQEVKRGSKILACAA 248 (647)
Q Consensus 214 ~~lI~Gp-PGTGKT~ti~~~i~~l~~~~~~ILv~a~ 248 (647)
..+|.|. +|+|||++.+.++..+.++|.+|.+.=|
T Consensus 6 ~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~KP 41 (228)
T 3of5_A 6 KFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLKP 41 (228)
T ss_dssp EEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEecc
Confidence 4678887 9999999999999999999998887644
No 448
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=85.64 E-value=0.62 Score=51.01 Aligned_cols=34 Identities=15% Similarity=0.213 Sum_probs=26.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHCC-CeEEEec
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQEVKRG-SKILACA 247 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~-~~ILv~a 247 (647)
+.+|.|+|||||||++..+...|-..| ..+.++.
T Consensus 398 ~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD 432 (573)
T 1m8p_A 398 TIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLL 432 (573)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred EEEeecCCCCCHHHHHHHHHHHhcccCCceEEEEC
Confidence 567999999999998888877776656 5554443
No 449
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=85.35 E-value=0.51 Score=44.07 Aligned_cols=25 Identities=8% Similarity=0.102 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
..+..|.||+|||||++...++..|
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 4678899999999999988777665
No 450
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=85.09 E-value=0.46 Score=61.60 Aligned_cols=57 Identities=23% Similarity=0.378 Sum_probs=34.8
Q ss_pred HHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccch-HHHHHHHHHh
Q 006386 202 KDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASN-IAVDNIVERL 260 (647)
Q Consensus 202 ~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn-~Avd~l~~rl 260 (647)
...+...+.....+|+.||||||||.++...+..+ .+..++.+.+|. ..+..+...+
T Consensus 1294 ~~ll~~ll~~~~pvLL~GptGtGKT~li~~~L~~l--~~~~~~~infS~~Tta~~l~~~~ 1351 (3245)
T 3vkg_A 1294 VDVLHAWLSEHRPLILCGPPGSGKTMTLTSTLRAF--PDFEVVSLNFSSATTPELLLKTF 1351 (3245)
T ss_dssp HHHHHHHHHTTCCCEEESSTTSSHHHHHHHHGGGC--TTEEEEEECCCTTCCHHHHHHHH
T ss_pred HHHHHHHHHCCCcEEEECCCCCCHHHHHHHHHHhC--CCCceEEEEeeCCCCHHHHHHHH
Confidence 34455556666789999999999999887766543 233444444332 2234444443
No 451
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=85.02 E-value=0.18 Score=49.26 Aligned_cols=25 Identities=20% Similarity=0.117 Sum_probs=19.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
..+.+|.|++|+||||.+..+...+
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3477899999999999886665543
No 452
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=84.75 E-value=0.51 Score=41.48 Aligned_cols=20 Identities=20% Similarity=0.499 Sum_probs=16.9
Q ss_pred eEEEEcCCCCchHHHHHHHH
Q 006386 214 VFMLHGPPGTGKTTTVVEII 233 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i 233 (647)
-.+|.|+||+|||+.+..++
T Consensus 3 ki~v~G~~~~GKSsli~~l~ 22 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLL 22 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 36899999999999887665
No 453
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=84.65 E-value=0.5 Score=43.64 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=17.0
Q ss_pred eEEEEcCCCCchHHHHHHHHH
Q 006386 214 VFMLHGPPGTGKTTTVVEIIL 234 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~ 234 (647)
-++|.|++|+||||.+..++.
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~ 27 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTR 27 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 367999999999998766653
No 454
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=84.44 E-value=0.54 Score=44.02 Aligned_cols=24 Identities=21% Similarity=0.477 Sum_probs=19.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQ 235 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~ 235 (647)
..-.+|.|+||+|||+.+..++..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999988766543
No 455
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=84.20 E-value=0.52 Score=43.28 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=17.3
Q ss_pred eEEEEcCCCCchHHHHHHHHH
Q 006386 214 VFMLHGPPGTGKTTTVVEIIL 234 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~ 234 (647)
.++|.|++|+||||.+..++.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~ 51 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTR 51 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 468999999999998876553
No 456
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=84.18 E-value=0.59 Score=49.93 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=22.9
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCC
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRG 240 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~ 240 (647)
-..++.|.||+||||++..+...+-..+
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 3678999999999999988887765444
No 457
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=83.99 E-value=0.58 Score=41.71 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=17.0
Q ss_pred eEEEEcCCCCchHHHHHHHH
Q 006386 214 VFMLHGPPGTGKTTTVVEII 233 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i 233 (647)
.++|.|+||+|||+.+..++
T Consensus 5 ~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 46899999999999887665
No 458
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=83.86 E-value=0.62 Score=47.40 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQEV 237 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~ 237 (647)
+++.+|.||.|+|||+++-++...+.
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi~~~l~ 48 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 57999999999999999877665554
No 459
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=83.59 E-value=0.64 Score=44.19 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=23.3
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHCC-CeEEEe
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRG-SKILAC 246 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~-~~ILv~ 246 (647)
...++.|.||.|+||||.+-. +.-+..+. -.|.+.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~-l~Gl~~p~~G~i~~~ 64 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYI-LGLLDAPTEGKVFLE 64 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHH-HTTSSCCSEEEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHH-HhcCCCCCceEEEEC
Confidence 456889999999999987654 43444332 255553
No 460
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=83.57 E-value=0.68 Score=47.65 Aligned_cols=26 Identities=23% Similarity=0.471 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIILQEV 237 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~~l~ 237 (647)
.++++|.||.|+||||.+-++...+.
T Consensus 23 ~g~~~i~G~NGaGKTTll~ai~~al~ 48 (365)
T 3qf7_A 23 SGITVVEGPNGAGKSSLFEAISFALF 48 (365)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999988855555544
No 461
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=83.56 E-value=0.62 Score=41.21 Aligned_cols=19 Identities=16% Similarity=0.352 Sum_probs=16.5
Q ss_pred EEEEcCCCCchHHHHHHHH
Q 006386 215 FMLHGPPGTGKTTTVVEII 233 (647)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i 233 (647)
.+|.|+||+|||+.+..++
T Consensus 8 i~v~G~~~~GKssl~~~l~ 26 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYC 26 (168)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 5799999999999887765
No 462
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=83.45 E-value=0.93 Score=46.31 Aligned_cols=29 Identities=21% Similarity=0.526 Sum_probs=21.6
Q ss_pred HHHHHHccCCeEEEEcCCCCchHHHHHHHH
Q 006386 204 AISKALSSKNVFMLHGPPGTGKTTTVVEII 233 (647)
Q Consensus 204 Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i 233 (647)
.+...+. ...+.|.||||+||||++-.++
T Consensus 208 ~L~~~~~-G~~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 208 PLEEALT-GRISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp HHHHHHT-TSEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHhcC-CCEEEEECCCCccHHHHHHHHh
Confidence 3444443 5789999999999998886555
No 463
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=83.40 E-value=0.63 Score=41.00 Aligned_cols=20 Identities=25% Similarity=0.536 Sum_probs=16.5
Q ss_pred EEEEcCCCCchHHHHHHHHH
Q 006386 215 FMLHGPPGTGKTTTVVEIIL 234 (647)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~ 234 (647)
.+|.|+||+|||+.+..++.
T Consensus 6 i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 67999999999998766553
No 464
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=83.36 E-value=0.68 Score=44.55 Aligned_cols=33 Identities=27% Similarity=0.370 Sum_probs=22.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHCC-CeEEEe
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQEVKRG-SKILAC 246 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l~~~~-~~ILv~ 246 (647)
.++.|.||.|+||||.+-.+. -+..+. -.|.+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~-Gl~~p~~G~i~~~ 58 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIA-GIVKPDRGEVRLN 58 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHH-TSSCCSEEEEEET
T ss_pred EEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEEC
Confidence 788999999999998876544 333332 255553
No 465
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=83.17 E-value=0.66 Score=43.76 Aligned_cols=35 Identities=37% Similarity=0.463 Sum_probs=23.6
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHCC-CeEEEe
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRG-SKILAC 246 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~-~~ILv~ 246 (647)
...++.|.||.|+||||.+-.+. -+..+. -.|.+.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~-Gl~~p~~G~I~~~ 69 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTIS-TYLKPLKGEIIYN 69 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHT-TSSCCSEEEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHh-cCCCCCCeEEEEC
Confidence 45688999999999998875544 333332 355554
No 466
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=83.12 E-value=0.63 Score=44.68 Aligned_cols=23 Identities=17% Similarity=0.413 Sum_probs=18.9
Q ss_pred cCCeEEEEcCCCCchHHHHHHHH
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEII 233 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i 233 (647)
...++.|.||.|+||||.+-.+.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~ 52 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALL 52 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 35689999999999998876544
No 467
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=83.11 E-value=0.64 Score=40.83 Aligned_cols=20 Identities=25% Similarity=0.599 Sum_probs=16.7
Q ss_pred EEEEcCCCCchHHHHHHHHH
Q 006386 215 FMLHGPPGTGKTTTVVEIIL 234 (647)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~ 234 (647)
.+|.|++|+|||+.+..++.
T Consensus 6 i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999998766653
No 468
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=83.09 E-value=1.7 Score=41.66 Aligned_cols=43 Identities=19% Similarity=0.156 Sum_probs=30.6
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEeccchHHHHHHHHHhc
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLV 261 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~a~tn~Avd~l~~rl~ 261 (647)
+..|.|+|||||||+...+... -| +-++++....-..+.+.+.
T Consensus 3 ~i~ltG~~~sGK~tv~~~l~~~---~g--~~~~~~~~~~~~~~~~~~g 45 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSN---YS--AVKYQLAGPIKDALAYAWG 45 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH---SC--EEECCTTHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh---cC--CeEEecChHHHHHHHHHcc
Confidence 4568999999999988665443 24 4457887777777776653
No 469
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=83.03 E-value=0.64 Score=42.44 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=18.1
Q ss_pred CeEEEEcCCCCchHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIIL 234 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~ 234 (647)
.-.+|.|++|+|||+.+..+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999998876653
No 470
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=82.83 E-value=0.74 Score=44.13 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=23.4
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHCC-CeEEEe
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRG-SKILAC 246 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~-~~ILv~ 246 (647)
...++.|.||.|+||||.+-. +.-+..+. -.|.+.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~-l~Gl~~p~~G~I~~~ 65 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNI-IGCLDKPTEGEVYID 65 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHH-HTTSSCCSEEEEEET
T ss_pred CCCEEEEECCCCCcHHHHHHH-HhcCCCCCceEEEEC
Confidence 356899999999999987654 43444332 255554
No 471
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=82.54 E-value=0.69 Score=40.97 Aligned_cols=19 Identities=32% Similarity=0.662 Sum_probs=16.3
Q ss_pred EEEEcCCCCchHHHHHHHH
Q 006386 215 FMLHGPPGTGKTTTVVEII 233 (647)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i 233 (647)
.+|.|+||+|||+.+..++
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFV 24 (170)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 5799999999999887665
No 472
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=82.53 E-value=0.7 Score=41.35 Aligned_cols=19 Identities=26% Similarity=0.515 Sum_probs=16.4
Q ss_pred EEEEcCCCCchHHHHHHHH
Q 006386 215 FMLHGPPGTGKTTTVVEII 233 (647)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i 233 (647)
.+|.|+||+|||+.+..++
T Consensus 10 i~v~G~~~~GKSsli~~l~ 28 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999877664
No 473
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=82.52 E-value=0.84 Score=43.35 Aligned_cols=24 Identities=8% Similarity=0.088 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 006386 213 NVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 213 ~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
.+..|.|+||||||++...+...+
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHc
Confidence 467899999999999887777665
No 474
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=82.31 E-value=0.74 Score=40.73 Aligned_cols=19 Identities=26% Similarity=0.606 Sum_probs=16.3
Q ss_pred EEEEcCCCCchHHHHHHHH
Q 006386 215 FMLHGPPGTGKTTTVVEII 233 (647)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i 233 (647)
.+|.|+||+|||+.+..++
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFV 24 (170)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6799999999999887665
No 475
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=82.07 E-value=0.74 Score=41.29 Aligned_cols=20 Identities=25% Similarity=0.494 Sum_probs=16.8
Q ss_pred eEEEEcCCCCchHHHHHHHH
Q 006386 214 VFMLHGPPGTGKTTTVVEII 233 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i 233 (647)
-.+|.|+||+|||+.+..++
T Consensus 10 ~i~v~G~~~~GKSsli~~l~ 29 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYV 29 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36899999999999886665
No 476
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=81.99 E-value=0.86 Score=44.09 Aligned_cols=24 Identities=33% Similarity=0.391 Sum_probs=19.6
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHH
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIIL 234 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~ 234 (647)
...++.|.||.|+||||.+-.+.-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999988766554
No 477
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=81.99 E-value=0.77 Score=40.44 Aligned_cols=19 Identities=21% Similarity=0.580 Sum_probs=16.2
Q ss_pred EEEEcCCCCchHHHHHHHH
Q 006386 215 FMLHGPPGTGKTTTVVEII 233 (647)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i 233 (647)
.+|.|+||+|||+.+..++
T Consensus 7 i~v~G~~~~GKssl~~~l~ 25 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6799999999999876655
No 478
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=81.93 E-value=1.2 Score=47.02 Aligned_cols=60 Identities=15% Similarity=0.225 Sum_probs=39.5
Q ss_pred HHHHHHHc--cCCeEEEEcCCCCchHHHHHHHHHHHHHCC--Ce-EEEeccchHHHHHHHHHhcc
Q 006386 203 DAISKALS--SKNVFMLHGPPGTGKTTTVVEIILQEVKRG--SK-ILACAASNIAVDNIVERLVP 262 (647)
Q Consensus 203 ~Av~~~l~--~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~--~~-ILv~a~tn~Avd~l~~rl~~ 262 (647)
++|...+. ..+-..|.||||+|||+++..++.+..+.. -. +..|.-...-+.++.+.+.+
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~iGER~rEv~e~~~~~~~ 206 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIE 206 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEEESCCHHHHHHHHHHHHH
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEECCCcchHHHHHHHHhhh
Confidence 56776543 345689999999999999999998865432 22 22334445556666666544
No 479
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=81.75 E-value=0.79 Score=40.62 Aligned_cols=19 Identities=26% Similarity=0.600 Sum_probs=16.2
Q ss_pred EEEEcCCCCchHHHHHHHH
Q 006386 215 FMLHGPPGTGKTTTVVEII 233 (647)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i 233 (647)
.+|.|+||+|||+.+-.++
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFV 24 (172)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5799999999999886655
No 480
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=81.72 E-value=0.82 Score=44.96 Aligned_cols=36 Identities=25% Similarity=0.261 Sum_probs=24.0
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHCC-CeEEEec
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRG-SKILACA 247 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~-~~ILv~a 247 (647)
...++.|.||.|+||||++-.+. -++.+. -.|.+..
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~-Gl~~p~~G~I~~~G 69 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFN-GILKPSSGRILFDN 69 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHT-TSSCCSEEEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHH-cCCCCCCeEEEECC
Confidence 45689999999999998876544 333332 2555543
No 481
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=81.69 E-value=1.1 Score=44.66 Aligned_cols=31 Identities=26% Similarity=0.512 Sum_probs=23.8
Q ss_pred HHHHHHHHccCCeEEEEcCCCCchHHHHHHHH
Q 006386 202 KDAISKALSSKNVFMLHGPPGTGKTTTVVEII 233 (647)
Q Consensus 202 ~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i 233 (647)
.+.+...+. ..++.+.||+|+||||++-.+.
T Consensus 156 i~~L~~~l~-G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLE-GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTT-TCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhcc-CcEEEEECCCCCCHHHHHHHHH
Confidence 334555554 6788999999999999987776
No 482
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=81.64 E-value=0.74 Score=45.15 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=18.6
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 006386 214 VFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
.+.|.||.|+||||++-.+....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 35799999999999887776554
No 483
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=81.58 E-value=0.85 Score=44.49 Aligned_cols=35 Identities=26% Similarity=0.301 Sum_probs=23.5
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHCC-CeEEEe
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRG-SKILAC 246 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~-~~ILv~ 246 (647)
...++.|.||.|+||||.+-.+. -++.+. -.|.+.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~-Gl~~p~~G~i~~~ 66 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCIN-FLEKPSEGAIIVN 66 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHT-TSSCCSEEEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHh-cCCCCCCcEEEEC
Confidence 35688999999999998876544 333332 255553
No 484
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=81.57 E-value=0.86 Score=44.31 Aligned_cols=35 Identities=26% Similarity=0.407 Sum_probs=23.5
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHCC-CeEEEe
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRG-SKILAC 246 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~-~~ILv~ 246 (647)
...++.|.||.|+||||.+-.+. -++.+. -.|.+.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~-Gl~~p~~G~i~~~ 67 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVIT-GFLKADEGRVYFE 67 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHT-TSSCCSEEEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHh-CCCCCCCcEEEEC
Confidence 45689999999999998875544 333332 355554
No 485
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=81.52 E-value=0.81 Score=40.49 Aligned_cols=19 Identities=26% Similarity=0.520 Sum_probs=16.4
Q ss_pred EEEEcCCCCchHHHHHHHH
Q 006386 215 FMLHGPPGTGKTTTVVEII 233 (647)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i 233 (647)
.+|.|+||+|||+.+-.++
T Consensus 9 i~v~G~~~~GKSsli~~l~ 27 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFV 27 (170)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 6799999999999887664
No 486
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=81.42 E-value=0.89 Score=43.70 Aligned_cols=35 Identities=34% Similarity=0.433 Sum_probs=23.6
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHCC-CeEEEe
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRG-SKILAC 246 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~-~~ILv~ 246 (647)
...++.|.||.|+||||.+-.+. -+..+. -.|.+.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~ 66 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIA-GLVRAQKGKIIFN 66 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHT-TSSCCSEEEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEEC
Confidence 35688999999999998875544 333332 355554
No 487
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=81.42 E-value=0.82 Score=40.75 Aligned_cols=19 Identities=37% Similarity=0.578 Sum_probs=16.0
Q ss_pred EEEEcCCCCchHHHHHHHH
Q 006386 215 FMLHGPPGTGKTTTVVEII 233 (647)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i 233 (647)
.+|.|+||+|||+.+-.++
T Consensus 7 i~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHh
Confidence 6899999999999876554
No 488
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=81.40 E-value=0.8 Score=43.69 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=18.8
Q ss_pred cCCeEEEEcCCCCchHHHHHHHH
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEII 233 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i 233 (647)
...++.|.||.|+||||.+..+.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~ 55 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIM 55 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 45688999999999998876544
No 489
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=81.38 E-value=0.89 Score=43.92 Aligned_cols=35 Identities=23% Similarity=0.239 Sum_probs=23.9
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHC-CCeEEEe
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKR-GSKILAC 246 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~-~~~ILv~ 246 (647)
...++.|.||.|+||||.+-.+. -+..+ .-.|.+-
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~p~~G~I~i~ 69 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQ-RFYIPENGQVLID 69 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHT-TSSCCSEEEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHh-cCCCCCCcEEEEC
Confidence 45689999999999998876544 33332 2356554
No 490
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=81.38 E-value=0.83 Score=40.47 Aligned_cols=19 Identities=37% Similarity=0.443 Sum_probs=15.8
Q ss_pred EEEEcCCCCchHHHHHHHH
Q 006386 215 FMLHGPPGTGKTTTVVEII 233 (647)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i 233 (647)
.+|.|+||+|||+.+..+.
T Consensus 5 i~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5799999999998876553
No 491
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=81.31 E-value=0.69 Score=42.05 Aligned_cols=20 Identities=35% Similarity=0.669 Sum_probs=16.8
Q ss_pred eEEEEcCCCCchHHHHHHHH
Q 006386 214 VFMLHGPPGTGKTTTVVEII 233 (647)
Q Consensus 214 ~~lI~GpPGTGKT~ti~~~i 233 (647)
-++|.|+||+|||+.+..++
T Consensus 4 kv~ivG~~gvGKStLl~~l~ 23 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLM 23 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 36899999999999887655
No 492
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=81.28 E-value=1.2 Score=44.39 Aligned_cols=29 Identities=21% Similarity=0.358 Sum_probs=21.7
Q ss_pred HHHHHHccCCeEEEEcCCCCchHHHHHHHH
Q 006386 204 AISKALSSKNVFMLHGPPGTGKTTTVVEII 233 (647)
Q Consensus 204 Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i 233 (647)
.+...+. ..+..|.||+|+||||++-.+.
T Consensus 162 ~lf~~l~-geiv~l~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 162 ELKEYLK-GKISTMAGLSGVGKSSLLNAIN 190 (301)
T ss_dssp HHHHHHS-SSEEEEECSTTSSHHHHHHHHS
T ss_pred HHHHHhc-CCeEEEECCCCCcHHHHHHHhc
Confidence 3444444 6788999999999998876554
No 493
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=81.28 E-value=0.83 Score=58.68 Aligned_cols=41 Identities=29% Similarity=0.233 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHHHHccCCeEEEEcCCCCchHHHHHHHHHHH
Q 006386 196 NLDHSQKDAISKALSSKNVFMLHGPPGTGKTTTVVEIILQE 236 (647)
Q Consensus 196 ~Ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~ti~~~i~~l 236 (647)
.|++.=-.++..++...-..++.||||||||+++..++..+
T Consensus 629 Pltdr~~~tl~~Al~~~~~~~l~GpaGtGKTe~vk~LA~~l 669 (2695)
T 4akg_A 629 PLLLIGFATLTDSLHQKYGGCFFGPAGTGKTETVKAFGQNL 669 (2695)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHHHHh
Confidence 34444445555666655677899999999999988877654
No 494
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=81.24 E-value=0.94 Score=44.33 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=19.6
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHH
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIIL 234 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~ 234 (647)
...++.|.||.|+||||.+-.+.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999998765554
No 495
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=81.17 E-value=0.9 Score=44.34 Aligned_cols=35 Identities=23% Similarity=0.300 Sum_probs=23.6
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHCC-CeEEEe
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRG-SKILAC 246 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~-~~ILv~ 246 (647)
...++.|.||.|+||||.+-.+. -++.+. -.|.+.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~-Gl~~p~~G~I~~~ 84 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLN-LLEDFDEGEIIID 84 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHT-TSSCCSEEEEEET
T ss_pred CCCEEEEEcCCCCcHHHHHHHHH-cCCCCCCcEEEEC
Confidence 45689999999999998876544 333332 255553
No 496
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=81.15 E-value=0.78 Score=41.88 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=18.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHHH
Q 006386 212 KNVFMLHGPPGTGKTTTVVEIIL 234 (647)
Q Consensus 212 ~~~~lI~GpPGTGKT~ti~~~i~ 234 (647)
..-.+|.|+||+|||+.+-.++.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34578999999999998877653
No 497
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=81.14 E-value=0.85 Score=40.39 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=16.2
Q ss_pred EEEEcCCCCchHHHHHHHH
Q 006386 215 FMLHGPPGTGKTTTVVEII 233 (647)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i 233 (647)
.+|.|+||+|||+.+-.++
T Consensus 9 i~v~G~~~~GKssli~~l~ 27 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYC 27 (170)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 6799999999999886655
No 498
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=81.13 E-value=0.86 Score=40.26 Aligned_cols=20 Identities=25% Similarity=0.531 Sum_probs=16.6
Q ss_pred EEEEcCCCCchHHHHHHHHH
Q 006386 215 FMLHGPPGTGKTTTVVEIIL 234 (647)
Q Consensus 215 ~lI~GpPGTGKT~ti~~~i~ 234 (647)
.+|.|+||+|||+.+..++.
T Consensus 9 i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 57999999999998866653
No 499
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=81.08 E-value=0.92 Score=43.88 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=23.6
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEe
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (647)
...++.|.||.|+||||.+-.+.-. +.+.-.|.+.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl-~~p~G~i~~~ 59 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFA 59 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS-SCCEEEEEET
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC-CCCCeEEEEC
Confidence 4568899999999999887655433 3222355554
No 500
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=81.01 E-value=0.93 Score=44.17 Aligned_cols=35 Identities=23% Similarity=0.191 Sum_probs=24.5
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHHCCCeEEEe
Q 006386 211 SKNVFMLHGPPGTGKTTTVVEIILQEVKRGSKILAC 246 (647)
Q Consensus 211 ~~~~~lI~GpPGTGKT~ti~~~i~~l~~~~~~ILv~ 246 (647)
...++.|.||.|+||||.+..+.-. ....-.|.+-
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~~~G~I~i~ 79 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRF-YDAEGDIKIG 79 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS-SCCEEEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc-CCCCeEEEEC
Confidence 4568999999999999887665543 3333356554
Done!