Query 006387
Match_columns 647
No_of_seqs 513 out of 4041
Neff 8.8
Searched_HMMs 46136
Date Thu Mar 28 22:33:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006387.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006387hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0029 NadB Aspartate oxidase 100.0 7E-109 1E-113 846.7 45.5 504 90-630 9-512 (518)
2 PLN02815 L-aspartate oxidase 100.0 7E-100 2E-104 843.5 56.9 561 83-643 24-585 (594)
3 PRK07395 L-aspartate oxidase; 100.0 1.3E-93 2.9E-98 791.2 51.5 528 85-640 6-553 (553)
4 TIGR01176 fum_red_Fp fumarate 100.0 1.3E-93 2.8E-98 795.6 51.6 521 87-628 2-552 (580)
5 PLN00128 Succinate dehydrogena 100.0 5.5E-93 1.2E-97 795.2 53.7 522 86-627 48-601 (635)
6 PRK06452 sdhA succinate dehydr 100.0 6.1E-93 1.3E-97 790.9 53.6 523 86-628 3-540 (566)
7 PRK08626 fumarate reductase fl 100.0 2.5E-92 5.4E-97 793.9 52.2 521 86-627 3-566 (657)
8 PRK08958 sdhA succinate dehydr 100.0 4.9E-92 1.1E-96 785.1 52.4 523 86-628 5-559 (588)
9 PTZ00139 Succinate dehydrogena 100.0 1.1E-91 2.4E-96 785.5 53.3 522 86-627 27-580 (617)
10 PRK09231 fumarate reductase fl 100.0 1.1E-91 2.4E-96 782.3 53.0 522 86-628 2-553 (582)
11 PRK08641 sdhA succinate dehydr 100.0 3.4E-91 7.4E-96 779.5 54.0 526 88-628 3-551 (589)
12 PRK07573 sdhA succinate dehydr 100.0 4.2E-91 9.2E-96 782.8 53.8 555 57-628 6-611 (640)
13 PRK09077 L-aspartate oxidase; 100.0 2.3E-90 5.1E-95 767.0 57.5 519 86-630 6-534 (536)
14 PRK07057 sdhA succinate dehydr 100.0 1.2E-90 2.6E-95 775.4 55.0 525 85-628 9-562 (591)
15 PRK09078 sdhA succinate dehydr 100.0 1.3E-90 2.8E-95 776.1 53.3 521 86-628 10-564 (598)
16 TIGR01811 sdhA_Bsu succinate d 100.0 2.4E-90 5.1E-95 772.8 51.8 524 91-627 1-574 (603)
17 PRK08205 sdhA succinate dehydr 100.0 7.8E-90 1.7E-94 769.4 54.7 522 87-628 4-553 (583)
18 PRK07803 sdhA succinate dehydr 100.0 1.1E-89 2.4E-94 771.5 54.8 545 86-644 6-602 (626)
19 PRK06069 sdhA succinate dehydr 100.0 9.5E-90 2.1E-94 769.4 53.6 525 86-627 3-550 (577)
20 PRK05945 sdhA succinate dehydr 100.0 2E-89 4.4E-94 765.7 52.5 522 87-627 2-548 (575)
21 PRK07804 L-aspartate oxidase; 100.0 4.6E-88 1E-92 748.7 54.4 506 85-628 13-523 (541)
22 PRK07512 L-aspartate oxidase; 100.0 6.6E-88 1.4E-92 742.8 50.9 486 86-627 7-495 (513)
23 PRK06263 sdhA succinate dehydr 100.0 3.3E-87 7.1E-92 744.4 54.8 520 86-628 5-532 (543)
24 TIGR01812 sdhA_frdA_Gneg succi 100.0 4.9E-87 1.1E-91 748.6 54.5 522 90-628 1-539 (566)
25 PRK05675 sdhA succinate dehydr 100.0 3.6E-87 7.7E-92 744.3 49.4 509 101-628 1-541 (570)
26 PRK08071 L-aspartate oxidase; 100.0 1.1E-86 2.4E-91 732.6 51.7 497 88-628 3-501 (510)
27 TIGR00551 nadB L-aspartate oxi 100.0 8.7E-86 1.9E-90 724.4 52.3 487 88-615 2-488 (488)
28 COG1053 SdhA Succinate dehydro 100.0 4.5E-86 9.8E-91 721.9 40.2 524 86-628 4-546 (562)
29 TIGR01816 sdhA_forward succina 100.0 1.2E-84 2.5E-89 724.3 50.0 501 107-628 1-532 (565)
30 PRK08401 L-aspartate oxidase; 100.0 5E-78 1.1E-82 658.6 47.4 456 89-625 2-458 (466)
31 TIGR02061 aprA adenosine phosp 100.0 1.1E-77 2.5E-82 665.4 47.3 503 90-627 1-593 (614)
32 PRK08275 putative oxidoreducta 100.0 9.2E-77 2E-81 661.6 48.1 501 86-628 7-536 (554)
33 PRK13800 putative oxidoreducta 100.0 4E-76 8.7E-81 687.4 47.1 496 86-628 11-542 (897)
34 PRK06854 adenylylsulfate reduc 100.0 1.5E-75 3.3E-80 655.0 48.8 504 86-628 9-584 (608)
35 KOG2403 Succinate dehydrogenas 100.0 8.5E-76 1.9E-80 602.1 22.4 536 87-643 54-624 (642)
36 PRK06175 L-aspartate oxidase; 100.0 5.2E-65 1.1E-69 550.0 44.8 428 87-555 3-431 (433)
37 KOG2404 Fumarate reductase, fl 100.0 3.1E-50 6.6E-55 388.0 21.5 373 90-487 11-466 (477)
38 PRK06481 fumarate reductase fl 100.0 3.7E-48 8.1E-53 427.2 37.5 374 86-493 59-504 (506)
39 PTZ00306 NADH-dependent fumara 100.0 9.6E-46 2.1E-50 440.7 38.3 393 85-496 406-906 (1167)
40 PF00890 FAD_binding_2: FAD bi 100.0 1.1E-44 2.4E-49 393.3 36.2 365 90-474 1-417 (417)
41 TIGR01813 flavo_cyto_c flavocy 100.0 4.3E-45 9.3E-50 398.6 32.0 366 90-486 1-439 (439)
42 PRK07121 hypothetical protein; 100.0 1.8E-43 3.9E-48 390.2 36.2 371 86-491 18-490 (492)
43 PRK12837 3-ketosteroid-delta-1 100.0 1.2E-42 2.7E-47 384.0 37.0 378 86-490 5-510 (513)
44 PRK08274 tricarballylate dehyd 100.0 1E-42 2.2E-47 382.6 35.4 378 87-493 3-462 (466)
45 PRK12845 3-ketosteroid-delta-1 100.0 2.1E-42 4.5E-47 383.6 37.8 382 85-490 13-563 (564)
46 PRK12844 3-ketosteroid-delta-1 100.0 4.2E-42 9.1E-47 382.3 34.3 383 86-492 4-550 (557)
47 PRK12834 putative FAD-binding 100.0 1.1E-40 2.5E-45 371.7 36.5 384 87-490 3-548 (549)
48 PRK12835 3-ketosteroid-delta-1 100.0 7E-41 1.5E-45 373.7 34.8 386 86-494 9-572 (584)
49 TIGR02485 CobZ_N-term precorri 100.0 6E-39 1.3E-43 348.9 35.0 372 93-492 1-430 (432)
50 PRK12839 hypothetical protein; 100.0 5.5E-39 1.2E-43 357.2 35.0 387 85-490 5-566 (572)
51 PRK12843 putative FAD-binding 100.0 1E-37 2.2E-42 349.1 36.1 389 85-493 13-573 (578)
52 PRK07843 3-ketosteroid-delta-1 100.0 4.5E-38 9.8E-43 350.4 31.8 380 86-490 5-555 (557)
53 PRK12842 putative succinate de 100.0 1.2E-37 2.7E-42 348.8 34.4 389 86-494 7-569 (574)
54 PRK06134 putative FAD-binding 100.0 3.7E-36 8E-41 336.7 36.2 388 85-492 9-571 (581)
55 COG2081 Predicted flavoprotein 100.0 1.3E-26 2.8E-31 234.7 29.0 346 87-492 2-407 (408)
56 PF03486 HI0933_like: HI0933-l 99.9 2.9E-25 6.3E-30 235.8 17.3 341 89-486 1-408 (409)
57 COG3573 Predicted oxidoreducta 99.9 1.8E-23 4E-28 203.8 23.3 259 86-359 3-316 (552)
58 PF02910 Succ_DH_flav_C: Fumar 99.9 1E-24 2.2E-29 194.6 9.6 99 530-628 1-100 (129)
59 TIGR00275 flavoprotein, HI0933 99.9 3.8E-21 8.3E-26 206.5 30.6 339 92-486 1-400 (400)
60 COG1249 Lpd Pyruvate/2-oxoglut 99.8 2.2E-19 4.7E-24 192.2 15.8 309 86-490 2-334 (454)
61 TIGR03862 flavo_PP4765 unchara 99.7 5.6E-15 1.2E-19 154.6 27.8 323 112-492 3-375 (376)
62 TIGR01421 gluta_reduc_1 glutat 99.7 1.5E-16 3.1E-21 173.8 14.5 42 88-131 2-44 (450)
63 TIGR01424 gluta_reduc_2 glutat 99.7 3E-16 6.4E-21 171.5 16.3 142 88-283 2-144 (446)
64 PLN02546 glutathione reductase 99.7 2.4E-16 5.2E-21 174.7 15.1 145 86-283 77-230 (558)
65 PTZ00058 glutathione reductase 99.7 2.3E-16 5.1E-21 174.8 14.7 46 86-133 46-92 (561)
66 PLN02507 glutathione reductase 99.7 5.9E-16 1.3E-20 170.8 17.0 155 86-282 23-180 (499)
67 TIGR01423 trypano_reduc trypan 99.7 3.5E-16 7.7E-21 171.5 14.6 33 87-119 2-36 (486)
68 PRK06467 dihydrolipoamide dehy 99.6 1E-15 2.3E-20 168.1 14.5 44 87-131 3-47 (471)
69 TIGR01438 TGR thioredoxin and 99.6 1.6E-15 3.4E-20 166.8 15.8 156 88-284 2-158 (484)
70 TIGR01372 soxA sarcosine oxida 99.6 1.6E-15 3.4E-20 179.9 16.4 89 29-125 110-201 (985)
71 KOG0405 Pyridine nucleotide-di 99.6 2.2E-15 4.7E-20 148.6 14.4 287 86-459 18-327 (478)
72 PRK06115 dihydrolipoamide dehy 99.6 1.7E-15 3.8E-20 166.2 14.6 45 88-133 3-48 (466)
73 PLN02661 Putative thiazole syn 99.6 9E-15 1.9E-19 150.0 18.3 144 86-281 90-244 (357)
74 PRK06116 glutathione reductase 99.6 2.1E-15 4.6E-20 165.2 14.7 34 87-120 3-37 (450)
75 PRK06370 mercuric reductase; V 99.6 1.7E-14 3.8E-19 158.6 17.6 36 86-121 3-39 (463)
76 COG0492 TrxB Thioredoxin reduc 99.6 6E-15 1.3E-19 150.8 12.1 114 87-283 2-117 (305)
77 PRK06416 dihydrolipoamide dehy 99.6 2.7E-14 5.9E-19 157.1 17.2 34 87-120 3-37 (462)
78 PRK06327 dihydrolipoamide dehy 99.6 1.8E-14 3.9E-19 158.7 15.5 31 88-118 4-35 (475)
79 PRK07818 dihydrolipoamide dehy 99.6 2.2E-14 4.7E-19 157.9 15.5 44 88-133 4-48 (466)
80 PRK14694 putative mercuric red 99.6 5.5E-14 1.2E-18 154.7 18.2 45 86-132 4-49 (468)
81 PRK05249 soluble pyridine nucl 99.6 2.3E-14 5E-19 157.7 15.2 40 86-125 3-43 (461)
82 PRK04176 ribulose-1,5-biphosph 99.6 4.2E-14 9E-19 142.1 15.5 144 86-281 23-173 (257)
83 PRK05976 dihydrolipoamide dehy 99.6 2.8E-14 6.1E-19 157.2 15.5 43 87-131 3-46 (472)
84 PRK08010 pyridine nucleotide-d 99.6 1.7E-14 3.7E-19 157.7 13.5 45 88-132 3-48 (441)
85 PRK07845 flavoprotein disulfid 99.5 6.1E-14 1.3E-18 154.0 15.8 149 90-284 3-154 (466)
86 PTZ00153 lipoamide dehydrogena 99.5 3E-14 6.5E-19 160.1 12.2 45 87-131 115-160 (659)
87 PRK13748 putative mercuric red 99.5 1.3E-13 2.7E-18 155.6 16.8 43 87-131 97-140 (561)
88 TIGR03140 AhpF alkyl hydropero 99.5 2.1E-14 4.6E-19 159.5 9.8 114 86-282 210-324 (515)
89 COG1635 THI4 Ribulose 1,5-bisp 99.5 1.8E-13 3.9E-18 127.6 14.0 141 86-278 28-175 (262)
90 PRK14727 putative mercuric red 99.5 7.2E-14 1.6E-18 154.0 13.3 45 86-131 14-59 (479)
91 TIGR01350 lipoamide_DH dihydro 99.5 2.2E-13 4.7E-18 150.0 17.1 42 88-131 1-43 (461)
92 KOG1335 Dihydrolipoamide dehyd 99.5 2.2E-13 4.7E-18 136.4 14.4 183 87-317 38-230 (506)
93 TIGR02053 MerA mercuric reduct 99.5 7.3E-14 1.6E-18 153.7 12.3 42 89-132 1-43 (463)
94 PRK06292 dihydrolipoamide dehy 99.5 2.3E-13 4.9E-18 149.8 16.2 33 87-119 2-35 (460)
95 PRK07251 pyridine nucleotide-d 99.5 9.3E-14 2E-18 151.8 12.9 46 88-133 3-49 (438)
96 PF01946 Thi4: Thi4 family; PD 99.5 2E-13 4.3E-18 128.5 12.9 140 86-279 15-163 (230)
97 TIGR00292 thiazole biosynthesi 99.5 4.3E-13 9.3E-18 134.3 16.0 144 87-281 20-170 (254)
98 PRK06912 acoL dihydrolipoamide 99.5 1.8E-13 4E-18 150.1 14.5 42 90-133 2-44 (458)
99 PRK07846 mycothione reductase; 99.5 2E-13 4.3E-18 149.2 14.5 40 88-131 1-41 (451)
100 PTZ00052 thioredoxin reductase 99.5 1.4E-13 3.1E-18 152.0 12.9 32 88-119 5-37 (499)
101 KOG4716 Thioredoxin reductase 99.5 3.5E-12 7.6E-17 125.6 20.3 188 86-317 17-217 (503)
102 KOG0042 Glycerol-3-phosphate d 99.5 1.8E-14 3.8E-19 149.9 3.4 187 86-282 65-288 (680)
103 PRK15317 alkyl hydroperoxide r 99.5 1.8E-13 3.9E-18 152.2 10.7 114 86-282 209-323 (517)
104 TIGR03452 mycothione_red mycot 99.5 4.1E-13 8.8E-18 146.9 12.8 40 88-131 2-42 (452)
105 TIGR03143 AhpF_homolog putativ 99.4 2.7E-13 5.9E-18 151.8 10.7 52 436-495 260-311 (555)
106 TIGR00136 gidA glucose-inhibit 99.4 1.7E-11 3.7E-16 134.4 23.6 152 89-282 1-155 (617)
107 COG0644 FixC Dehydrogenases (f 99.4 2.9E-12 6.3E-17 137.9 17.3 149 87-282 2-153 (396)
108 PRK11101 glpA sn-glycerol-3-ph 99.4 3E-12 6.6E-17 143.0 15.4 183 87-282 5-212 (546)
109 TIGR01292 TRX_reduct thioredox 99.4 1.9E-12 4.2E-17 133.9 10.7 48 436-491 252-299 (300)
110 COG0578 GlpA Glycerol-3-phosph 99.4 1.2E-11 2.6E-16 133.1 16.7 185 86-282 10-226 (532)
111 PRK13512 coenzyme A disulfide 99.4 3.3E-12 7.2E-17 139.3 11.6 32 90-121 3-37 (438)
112 PRK05329 anaerobic glycerol-3- 99.3 1.4E-10 3.1E-15 124.1 22.9 60 214-281 259-318 (422)
113 PRK10262 thioredoxin reductase 99.3 5.2E-12 1.1E-16 132.2 10.3 35 86-120 4-39 (321)
114 PRK12266 glpD glycerol-3-phosp 99.3 7.1E-11 1.5E-15 131.0 18.5 183 87-282 5-217 (508)
115 PLN02464 glycerol-3-phosphate 99.3 4.9E-11 1.1E-15 134.9 16.4 192 87-282 70-297 (627)
116 PRK10015 oxidoreductase; Provi 99.3 4.1E-11 8.9E-16 130.1 15.0 153 87-283 4-166 (429)
117 TIGR03329 Phn_aa_oxid putative 99.3 1.9E-10 4.1E-15 126.4 19.1 179 86-282 22-238 (460)
118 COG3634 AhpF Alkyl hydroperoxi 99.3 7.6E-13 1.7E-17 130.7 0.1 62 212-281 264-325 (520)
119 PF01266 DAO: FAD dependent ox 99.2 1.4E-10 3.1E-15 122.8 16.2 178 90-282 1-204 (358)
120 PRK09564 coenzyme A disulfide 99.2 1.6E-10 3.4E-15 126.8 16.4 33 90-122 2-37 (444)
121 PRK05192 tRNA uridine 5-carbox 99.2 3.5E-10 7.5E-15 124.5 16.9 153 87-282 3-158 (618)
122 PF00732 GMC_oxred_N: GMC oxid 99.2 2E-10 4.4E-15 118.8 14.1 62 218-281 196-258 (296)
123 PRK09754 phenylpropionate diox 99.2 5.1E-10 1.1E-14 120.7 17.2 52 437-490 255-308 (396)
124 PRK13369 glycerol-3-phosphate 99.2 4E-10 8.7E-15 125.0 16.6 187 86-282 4-216 (502)
125 PRK12831 putative oxidoreducta 99.2 6.8E-11 1.5E-15 129.5 10.3 49 436-493 412-461 (464)
126 PF12831 FAD_oxidored: FAD dep 99.2 2.5E-11 5.4E-16 131.8 5.6 146 90-279 1-148 (428)
127 TIGR02023 BchP-ChlP geranylger 99.2 2E-09 4.3E-14 115.8 20.0 31 89-119 1-32 (388)
128 TIGR01316 gltA glutamate synth 99.1 1.1E-10 2.4E-15 127.6 10.0 48 436-492 402-449 (449)
129 PRK09853 putative selenate red 99.1 3.4E-10 7.3E-15 131.0 13.7 48 436-492 794-841 (1019)
130 KOG1298 Squalene monooxygenase 99.1 1.8E-10 3.9E-15 115.8 9.9 167 84-284 41-211 (509)
131 TIGR02028 ChlP geranylgeranyl 99.1 3.2E-09 6.8E-14 114.4 20.1 44 446-493 266-309 (398)
132 PF07992 Pyr_redox_2: Pyridine 99.1 2.5E-10 5.5E-15 110.8 10.2 31 90-120 1-32 (201)
133 PRK12409 D-amino acid dehydrog 99.1 2.6E-09 5.7E-14 115.8 19.1 45 89-133 2-48 (410)
134 PF01134 GIDA: Glucose inhibit 99.1 5.1E-10 1.1E-14 117.0 12.9 150 90-282 1-153 (392)
135 PLN02697 lycopene epsilon cycl 99.1 5.8E-09 1.3E-13 114.9 21.8 36 86-121 106-142 (529)
136 TIGR01373 soxB sarcosine oxida 99.1 3.3E-09 7.2E-14 114.9 19.7 183 86-282 28-241 (407)
137 PRK12810 gltD glutamate syntha 99.1 1.2E-09 2.5E-14 120.4 15.7 50 436-494 416-466 (471)
138 COG2509 Uncharacterized FAD-de 99.1 6.2E-08 1.3E-12 100.6 26.8 60 213-282 172-231 (486)
139 TIGR01320 mal_quin_oxido malat 99.1 4.7E-09 1E-13 115.3 19.8 66 212-282 176-241 (483)
140 PRK14989 nitrite reductase sub 99.1 5.3E-10 1.1E-14 130.0 12.9 50 436-490 260-309 (847)
141 PRK06126 hypothetical protein; 99.1 3.6E-09 7.9E-14 119.0 19.2 65 214-283 126-190 (545)
142 PRK12769 putative oxidoreducta 99.1 8.6E-09 1.9E-13 118.0 22.5 39 87-125 326-365 (654)
143 PRK00711 D-amino acid dehydrog 99.1 2.2E-09 4.7E-14 116.7 16.7 60 212-282 199-258 (416)
144 PRK04965 NADH:flavorubredoxin 99.1 3.7E-09 7.9E-14 113.3 18.1 49 437-490 253-301 (377)
145 COG0579 Predicted dehydrogenas 99.1 2.2E-09 4.9E-14 113.5 16.0 183 87-281 2-211 (429)
146 PRK11749 dihydropyrimidine deh 99.1 5.9E-10 1.3E-14 122.4 12.1 50 436-494 403-453 (457)
147 PLN00093 geranylgeranyl diphos 99.1 6.2E-09 1.4E-13 113.4 19.2 37 85-121 36-73 (450)
148 PRK10157 putative oxidoreducta 99.1 1.6E-09 3.5E-14 117.7 14.4 157 87-281 4-164 (428)
149 PRK05257 malate:quinone oxidor 99.1 4.3E-09 9.2E-14 115.7 17.6 67 212-282 181-247 (494)
150 PRK11728 hydroxyglutarate oxid 99.0 3.9E-09 8.5E-14 113.8 16.6 175 88-281 2-204 (393)
151 TIGR03315 Se_ygfK putative sel 99.0 8E-10 1.7E-14 128.5 11.7 38 87-124 536-574 (1012)
152 KOG0404 Thioredoxin reductase 99.0 2.4E-09 5.1E-14 100.1 12.4 120 86-283 6-126 (322)
153 TIGR03364 HpnW_proposed FAD de 99.0 3.2E-09 6.9E-14 113.3 15.2 46 89-134 1-47 (365)
154 TIGR01377 soxA_mon sarcosine o 99.0 2.5E-09 5.4E-14 114.7 14.4 180 89-281 1-200 (380)
155 PRK07364 2-octaprenyl-6-methox 99.0 8.4E-09 1.8E-13 112.1 18.0 159 86-283 16-183 (415)
156 PRK12779 putative bifunctional 99.0 8.9E-10 1.9E-14 129.3 10.5 50 436-494 578-628 (944)
157 PRK11259 solA N-methyltryptoph 99.0 4.3E-09 9.4E-14 112.7 14.9 179 88-282 3-205 (376)
158 PLN02463 lycopene beta cyclase 99.0 3.5E-08 7.7E-13 107.0 21.7 35 86-120 26-61 (447)
159 PRK12775 putative trifunctiona 99.0 1E-09 2.3E-14 129.9 10.4 51 436-495 702-757 (1006)
160 PRK12814 putative NADPH-depend 99.0 1.7E-09 3.6E-14 123.4 11.4 52 436-496 452-504 (652)
161 PRK01747 mnmC bifunctional tRN 99.0 1.7E-08 3.6E-13 116.0 19.7 50 88-137 260-311 (662)
162 PRK12778 putative bifunctional 99.0 2.4E-09 5.2E-14 124.5 12.6 49 436-493 702-750 (752)
163 PRK12770 putative glutamate sy 99.0 3.6E-09 7.9E-14 112.1 12.6 48 436-492 302-349 (352)
164 PRK13339 malate:quinone oxidor 99.0 1.8E-08 3.9E-13 110.1 17.9 67 212-282 182-248 (497)
165 TIGR02032 GG-red-SF geranylger 99.0 5.1E-09 1.1E-13 107.9 12.2 148 89-283 1-150 (295)
166 PRK06185 hypothetical protein; 98.9 1.4E-08 3.1E-13 109.9 15.9 64 214-283 108-171 (407)
167 COG0665 DadA Glycine/D-amino a 98.9 1.4E-08 3E-13 109.2 15.7 182 87-283 3-214 (387)
168 TIGR02374 nitri_red_nirB nitri 98.9 1.8E-08 4E-13 117.2 17.3 49 437-490 252-300 (785)
169 PLN02985 squalene monooxygenas 98.9 1.8E-08 3.8E-13 111.7 16.3 64 214-283 147-210 (514)
170 KOG2415 Electron transfer flav 98.9 3.8E-09 8.2E-14 107.3 9.6 163 86-283 74-258 (621)
171 PTZ00318 NADH dehydrogenase-li 98.9 4.9E-08 1.1E-12 106.1 19.1 55 436-494 294-349 (424)
172 PF01494 FAD_binding_3: FAD bi 98.9 5.8E-09 1.3E-13 110.4 11.1 63 214-282 111-173 (356)
173 PRK13984 putative oxidoreducta 98.9 3.8E-09 8.3E-14 120.1 10.1 48 436-493 555-602 (604)
174 COG0445 GidA Flavin-dependent 98.9 2.5E-09 5.4E-14 113.0 7.6 151 88-282 4-159 (621)
175 TIGR01317 GOGAT_sm_gam glutama 98.9 9.2E-09 2E-13 113.4 12.4 50 436-494 430-480 (485)
176 PRK09126 hypothetical protein; 98.9 3.6E-08 7.9E-13 106.2 16.7 35 88-122 3-38 (392)
177 PRK13977 myosin-cross-reactive 98.9 6.2E-08 1.3E-12 105.9 18.4 70 213-283 225-295 (576)
178 PRK05335 tRNA (uracil-5-)-meth 98.9 4.6E-08 9.9E-13 103.4 16.8 34 89-122 3-37 (436)
179 TIGR03169 Nterm_to_SelD pyridi 98.9 6.9E-08 1.5E-12 103.0 17.7 55 436-494 257-312 (364)
180 PTZ00383 malate:quinone oxidor 98.9 5E-08 1.1E-12 107.0 16.7 60 212-282 209-274 (497)
181 PRK06184 hypothetical protein; 98.9 5.8E-08 1.3E-12 108.1 17.3 61 215-283 110-170 (502)
182 PRK06183 mhpA 3-(3-hydroxyphen 98.9 5.3E-08 1.2E-12 109.3 17.1 159 86-283 8-176 (538)
183 PRK12809 putative oxidoreducta 98.9 9.8E-08 2.1E-12 109.0 19.3 39 87-125 309-348 (639)
184 PRK07045 putative monooxygenas 98.8 4.2E-08 9E-13 105.6 14.9 61 214-282 106-166 (388)
185 PRK07608 ubiquinone biosynthes 98.8 7.9E-08 1.7E-12 103.5 17.0 36 87-122 4-40 (388)
186 PRK06834 hypothetical protein; 98.8 6.2E-08 1.3E-12 107.0 16.4 59 214-283 100-158 (488)
187 PRK08773 2-octaprenyl-3-methyl 98.8 5.4E-08 1.2E-12 104.9 15.6 58 214-282 113-170 (392)
188 COG0654 UbiH 2-polyprenyl-6-me 98.8 3.5E-08 7.7E-13 106.0 14.0 146 88-282 2-163 (387)
189 PRK02106 choline dehydrogenase 98.8 8.9E-08 1.9E-12 107.9 17.7 58 219-281 205-262 (560)
190 TIGR01318 gltD_gamma_fam gluta 98.8 1.5E-08 3.3E-13 111.3 10.6 38 87-124 140-178 (467)
191 PRK08244 hypothetical protein; 98.8 7.7E-08 1.7E-12 106.9 16.0 60 215-282 101-160 (493)
192 PRK08849 2-octaprenyl-3-methyl 98.8 8.9E-08 1.9E-12 102.9 15.9 59 215-283 111-169 (384)
193 PRK07190 hypothetical protein; 98.8 8.5E-08 1.8E-12 105.8 15.9 36 87-122 4-40 (487)
194 PRK08013 oxidoreductase; Provi 98.8 8.3E-08 1.8E-12 103.7 15.4 60 214-283 111-170 (400)
195 PRK06617 2-octaprenyl-6-methox 98.8 1.1E-07 2.5E-12 101.7 15.9 59 214-283 104-162 (374)
196 PRK08020 ubiF 2-octaprenyl-3-m 98.8 1E-07 2.2E-12 102.8 15.1 60 214-283 112-171 (391)
197 PRK08132 FAD-dependent oxidore 98.8 1.4E-07 3.1E-12 106.1 16.9 157 87-282 22-186 (547)
198 TIGR01988 Ubi-OHases Ubiquinon 98.8 1E-07 2.2E-12 102.3 14.9 59 214-282 106-164 (385)
199 KOG2960 Protein involved in th 98.8 1.7E-08 3.8E-13 93.6 7.4 145 86-278 74-231 (328)
200 PRK11445 putative oxidoreducta 98.8 1.8E-07 4E-12 99.1 16.3 33 89-121 2-34 (351)
201 TIGR03378 glycerol3P_GlpB glyc 98.8 5.2E-07 1.1E-11 95.7 19.2 60 213-280 262-321 (419)
202 TIGR01810 betA choline dehydro 98.7 2.9E-07 6.2E-12 103.2 18.0 59 218-281 197-255 (532)
203 PRK07333 2-octaprenyl-6-methox 98.7 1.1E-07 2.4E-12 102.9 13.7 59 213-282 110-168 (403)
204 PRK08243 4-hydroxybenzoate 3-m 98.7 2E-07 4.4E-12 100.4 15.4 62 215-283 104-165 (392)
205 TIGR02462 pyranose_ox pyranose 98.7 3.1E-07 6.7E-12 101.2 16.9 56 226-282 225-280 (544)
206 PRK06847 hypothetical protein; 98.7 3E-07 6.4E-12 98.5 16.4 153 88-283 4-165 (375)
207 PRK05732 2-octaprenyl-6-methox 98.7 1.8E-07 3.8E-12 101.0 14.5 58 215-282 113-170 (395)
208 PRK07494 2-octaprenyl-6-methox 98.7 2.1E-07 4.5E-12 100.2 15.0 37 86-122 5-42 (388)
209 PRK07538 hypothetical protein; 98.7 2.7E-07 5.7E-12 100.2 15.7 64 214-282 102-166 (413)
210 PRK05714 2-octaprenyl-3-methyl 98.7 2.9E-07 6.2E-12 99.7 15.6 59 214-283 112-170 (405)
211 PLN02785 Protein HOTHEAD 98.7 6.3E-07 1.4E-11 100.6 18.5 56 226-282 231-291 (587)
212 PRK08850 2-octaprenyl-6-methox 98.7 2.7E-07 5.8E-12 100.0 15.2 59 215-283 112-170 (405)
213 PF13738 Pyr_redox_3: Pyridine 98.7 1.8E-07 4E-12 90.8 12.6 59 212-281 80-138 (203)
214 PRK08163 salicylate hydroxylas 98.7 2.8E-07 6E-12 99.5 15.1 60 214-283 109-168 (396)
215 TIGR02730 carot_isom carotene 98.7 1.2E-06 2.7E-11 97.2 20.4 58 214-281 229-286 (493)
216 KOG2311 NAD/FAD-utilizing prot 98.7 1.6E-07 3.5E-12 97.2 11.3 155 86-281 26-186 (679)
217 TIGR02360 pbenz_hydroxyl 4-hyd 98.6 5.3E-07 1.1E-11 97.0 15.5 63 214-283 103-165 (390)
218 PRK12771 putative glutamate sy 98.6 5.5E-08 1.2E-12 109.6 8.2 51 436-495 395-446 (564)
219 TIGR01984 UbiH 2-polyprenyl-6- 98.6 3.6E-07 7.8E-12 98.1 14.1 59 214-282 105-163 (382)
220 PRK09897 hypothetical protein; 98.6 1.3E-06 2.9E-11 96.4 17.2 157 89-281 2-166 (534)
221 TIGR01790 carotene-cycl lycope 98.6 5.9E-07 1.3E-11 96.7 14.1 35 90-124 1-36 (388)
222 PTZ00367 squalene epoxidase; P 98.6 8.1E-07 1.8E-11 99.1 15.4 35 86-120 31-66 (567)
223 PLN02172 flavin-containing mon 98.6 9.2E-07 2E-11 96.6 15.1 38 87-124 9-47 (461)
224 PF05834 Lycopene_cycl: Lycope 98.6 6.3E-06 1.4E-10 88.1 21.3 33 90-122 1-36 (374)
225 PRK06475 salicylate hydroxylas 98.6 9.3E-07 2E-11 95.5 14.8 63 214-283 107-169 (400)
226 PRK06996 hypothetical protein; 98.5 1.6E-06 3.4E-11 93.7 16.0 58 214-280 115-173 (398)
227 KOG2820 FAD-dependent oxidored 98.5 1.3E-06 2.9E-11 87.2 13.9 64 213-285 152-216 (399)
228 PRK07236 hypothetical protein; 98.5 1.2E-06 2.6E-11 94.3 15.0 35 87-121 5-40 (386)
229 KOG1336 Monodehydroascorbate/f 98.5 3E-07 6.5E-12 96.3 9.5 70 418-488 310-380 (478)
230 COG2303 BetA Choline dehydroge 98.5 1.3E-06 2.7E-11 97.6 15.2 61 218-282 206-267 (542)
231 KOG2853 Possible oxidoreductas 98.5 1.2E-06 2.5E-11 87.4 12.9 57 85-141 83-145 (509)
232 COG1233 Phytoene dehydrogenase 98.5 1.8E-06 4E-11 95.3 15.1 39 88-126 3-42 (487)
233 TIGR01989 COQ6 Ubiquinone bios 98.5 1.8E-06 4E-11 94.3 15.0 62 214-283 117-185 (437)
234 COG1252 Ndh NADH dehydrogenase 98.5 3.4E-06 7.3E-11 89.0 16.2 33 89-121 4-39 (405)
235 KOG2844 Dimethylglycine dehydr 98.5 1.9E-06 4.2E-11 92.9 14.0 60 212-282 185-244 (856)
236 PRK08294 phenol 2-monooxygenas 98.4 5.2E-06 1.1E-10 94.5 17.3 67 215-283 142-212 (634)
237 PRK07588 hypothetical protein; 98.4 2.4E-06 5.2E-11 92.1 13.9 32 90-121 2-34 (391)
238 TIGR02733 desat_CrtD C-3',4' d 98.4 1.4E-05 3E-10 88.9 19.5 62 213-279 231-292 (492)
239 PF06039 Mqo: Malate:quinone o 98.4 7.7E-06 1.7E-10 86.1 16.1 64 214-281 181-244 (488)
240 TIGR02731 phytoene_desat phyto 98.4 1.5E-05 3.3E-10 87.6 19.2 62 214-279 213-274 (453)
241 PRK07208 hypothetical protein; 98.4 1.3E-05 2.8E-10 88.9 18.5 62 214-280 218-279 (479)
242 PRK06753 hypothetical protein; 98.4 5.1E-06 1.1E-10 88.9 14.4 33 90-122 2-35 (373)
243 PRK05868 hypothetical protein; 98.4 6.7E-06 1.4E-10 87.9 14.7 33 90-122 3-36 (372)
244 COG3075 GlpB Anaerobic glycero 98.3 1.5E-05 3.4E-10 79.4 15.2 59 214-280 258-316 (421)
245 PLN02927 antheraxanthin epoxid 98.3 1.5E-05 3.2E-10 89.9 16.4 35 86-120 79-114 (668)
246 COG3380 Predicted NAD/FAD-depe 98.3 1.4E-06 3E-11 84.5 7.1 35 90-124 3-38 (331)
247 KOG1238 Glucose dehydrogenase/ 98.3 6.1E-06 1.3E-10 90.0 12.5 61 218-281 256-318 (623)
248 TIGR02734 crtI_fam phytoene de 98.3 4.4E-05 9.5E-10 85.2 19.8 56 214-279 219-274 (502)
249 TIGR03377 glycerol3P_GlpA glyc 98.3 1E-05 2.2E-10 90.4 14.5 66 212-282 126-191 (516)
250 PLN02612 phytoene desaturase 98.2 5.6E-05 1.2E-09 85.1 18.2 57 214-279 308-364 (567)
251 TIGR03219 salicylate_mono sali 98.2 1.9E-05 4.2E-10 85.7 14.1 33 90-122 2-36 (414)
252 COG2072 TrkA Predicted flavopr 98.2 1.9E-05 4.2E-10 86.0 13.9 39 86-124 6-46 (443)
253 KOG2852 Possible oxidoreductas 98.2 5.1E-06 1.1E-10 81.2 7.8 169 88-283 10-210 (380)
254 PF13454 NAD_binding_9: FAD-NA 98.2 1.2E-05 2.6E-10 74.6 9.9 30 92-121 1-36 (156)
255 PF13450 NAD_binding_8: NAD(P) 98.1 2.2E-06 4.7E-11 67.3 4.0 35 93-127 1-36 (68)
256 PF04820 Trp_halogenase: Trypt 98.1 6.1E-05 1.3E-09 82.4 15.2 61 214-284 154-214 (454)
257 TIGR02732 zeta_caro_desat caro 98.1 0.00011 2.3E-09 81.2 16.7 66 212-280 217-283 (474)
258 KOG2614 Kynurenine 3-monooxyge 98.1 2.8E-05 6E-10 80.5 11.1 37 89-125 3-40 (420)
259 COG1251 NirB NAD(P)H-nitrite r 98.0 4.2E-05 9.1E-10 84.3 12.5 48 438-490 258-305 (793)
260 TIGR01789 lycopene_cycl lycope 98.0 3.7E-05 7.9E-10 82.0 11.8 39 90-128 1-42 (370)
261 COG1148 HdrA Heterodisulfide r 98.0 1.4E-05 3E-10 83.6 7.2 39 87-125 123-162 (622)
262 KOG1399 Flavin-containing mono 97.9 3.6E-05 7.7E-10 83.0 9.4 37 88-124 6-43 (448)
263 PF00070 Pyr_redox: Pyridine n 97.9 0.00021 4.5E-09 58.0 10.9 32 91-122 2-34 (80)
264 PRK08255 salicylyl-CoA 5-hydro 97.9 8.2E-05 1.8E-09 86.8 11.8 32 90-121 2-36 (765)
265 PLN02487 zeta-carotene desatur 97.8 0.00045 9.7E-09 77.3 15.4 73 205-280 286-359 (569)
266 PF00743 FMO-like: Flavin-bind 97.7 0.0003 6.5E-09 78.2 13.3 35 90-124 3-38 (531)
267 KOG4254 Phytoene desaturase [C 97.7 0.00016 3.4E-09 75.3 9.9 56 215-280 265-320 (561)
268 TIGR00031 UDP-GALP_mutase UDP- 97.7 3.2E-05 7E-10 81.8 5.0 40 89-128 2-42 (377)
269 COG1232 HemY Protoporphyrinoge 97.7 0.00091 2E-08 71.9 15.5 35 90-124 2-39 (444)
270 TIGR03197 MnmC_Cterm tRNA U-34 97.7 0.00092 2E-08 71.7 15.5 60 212-283 133-192 (381)
271 TIGR02352 thiamin_ThiO glycine 97.7 0.00046 9.9E-09 72.5 12.6 62 212-284 135-196 (337)
272 PRK05976 dihydrolipoamide dehy 97.7 0.0005 1.1E-08 76.0 13.4 33 89-121 181-214 (472)
273 KOG0029 Amine oxidase [Seconda 97.6 5.4E-05 1.2E-09 83.1 5.4 40 86-125 13-53 (501)
274 PF13434 K_oxygenase: L-lysine 97.6 0.00038 8.2E-09 73.1 11.2 34 88-121 2-37 (341)
275 COG0562 Glf UDP-galactopyranos 97.6 8.1E-05 1.8E-09 74.3 5.0 40 89-128 2-42 (374)
276 PLN02576 protoporphyrinogen ox 97.6 7.4E-05 1.6E-09 83.2 5.4 40 87-126 11-52 (496)
277 PRK07233 hypothetical protein; 97.6 7.7E-05 1.7E-09 81.5 5.4 37 90-126 1-38 (434)
278 PTZ00363 rab-GDP dissociation 97.5 7.6E-05 1.6E-09 80.9 4.4 41 87-127 3-44 (443)
279 TIGR03385 CoA_CoA_reduc CoA-di 97.5 0.00015 3.1E-09 79.2 6.6 53 436-490 248-303 (427)
280 PLN02268 probable polyamine ox 97.5 9.5E-05 2.1E-09 80.9 5.1 39 89-127 1-40 (435)
281 TIGR01350 lipoamide_DH dihydro 97.5 0.0012 2.6E-08 72.8 13.3 33 89-121 171-204 (461)
282 PRK06416 dihydrolipoamide dehy 97.5 0.0013 2.7E-08 72.6 13.4 33 89-121 173-206 (462)
283 TIGR00562 proto_IX_ox protopor 97.5 0.00011 2.5E-09 80.9 5.0 38 89-126 3-45 (462)
284 TIGR03140 AhpF alkyl hydropero 97.5 0.0011 2.3E-08 74.1 12.8 47 228-278 401-447 (515)
285 PRK06115 dihydrolipoamide dehy 97.5 0.0016 3.4E-08 71.9 13.8 32 89-120 175-207 (466)
286 PRK15317 alkyl hydroperoxide r 97.5 0.0012 2.6E-08 73.9 13.0 51 224-278 396-446 (517)
287 PF13434 K_oxygenase: L-lysine 97.4 0.0023 5E-08 67.3 14.1 140 87-278 189-338 (341)
288 PRK06912 acoL dihydrolipoamide 97.4 0.0015 3.3E-08 71.9 13.2 32 89-120 171-203 (458)
289 COG4529 Uncharacterized protei 97.4 0.0027 5.8E-08 67.7 14.2 40 89-128 2-45 (474)
290 PRK07818 dihydrolipoamide dehy 97.4 0.0022 4.8E-08 70.7 14.1 32 89-120 173-205 (466)
291 TIGR02053 MerA mercuric reduct 97.4 0.0017 3.6E-08 71.7 13.0 32 89-120 167-199 (463)
292 KOG1346 Programmed cell death 97.4 0.00018 4E-09 73.8 4.5 54 435-491 464-519 (659)
293 PRK06370 mercuric reductase; V 97.4 0.0021 4.6E-08 70.9 13.4 33 89-121 172-205 (463)
294 TIGR01292 TRX_reduct thioredox 97.3 0.0016 3.4E-08 67.2 11.6 47 228-279 190-236 (300)
295 PRK11883 protoporphyrinogen ox 97.3 0.00019 4.1E-09 78.8 4.9 37 90-126 2-41 (451)
296 TIGR01316 gltA glutamate synth 97.3 0.0022 4.8E-08 70.3 13.1 32 89-120 273-305 (449)
297 COG1231 Monoamine oxidase [Ami 97.3 0.00025 5.4E-09 74.7 5.1 43 86-128 5-48 (450)
298 COG3349 Uncharacterized conser 97.3 0.00022 4.9E-09 76.4 4.8 36 90-125 2-38 (485)
299 PRK04965 NADH:flavorubredoxin 97.3 0.0027 5.9E-08 68.0 12.4 33 89-121 142-175 (377)
300 PRK12831 putative oxidoreducta 97.2 0.003 6.6E-08 69.5 12.9 32 89-120 282-314 (464)
301 PRK06327 dihydrolipoamide dehy 97.2 0.0041 8.9E-08 68.8 13.9 32 89-120 184-216 (475)
302 PF06100 Strep_67kDa_ant: Stre 97.2 0.016 3.4E-07 62.3 17.4 65 214-281 207-274 (500)
303 PRK06116 glutathione reductase 97.2 0.0039 8.5E-08 68.5 13.2 33 89-121 168-201 (450)
304 PRK10262 thioredoxin reductase 97.2 0.004 8.7E-08 65.1 12.8 97 89-278 147-245 (321)
305 KOG2665 Predicted FAD-dependen 97.2 0.00092 2E-08 66.6 7.0 37 86-122 46-85 (453)
306 PRK12416 protoporphyrinogen ox 97.2 0.00038 8.1E-09 76.9 4.8 37 90-126 3-46 (463)
307 PRK09754 phenylpropionate diox 97.2 0.0037 8E-08 67.4 12.3 33 89-121 145-178 (396)
308 PRK07251 pyridine nucleotide-d 97.1 0.0046 9.9E-08 67.7 13.0 33 89-121 158-191 (438)
309 PLN02676 polyamine oxidase 97.1 0.00053 1.1E-08 75.8 5.3 40 87-126 25-66 (487)
310 PLN02852 ferredoxin-NADP+ redu 97.1 0.00061 1.3E-08 74.7 5.7 37 88-124 26-65 (491)
311 PRK05249 soluble pyridine nucl 97.1 0.0044 9.6E-08 68.3 12.5 32 89-120 176-208 (461)
312 TIGR01421 gluta_reduc_1 glutat 97.1 0.0059 1.3E-07 67.0 13.1 33 89-121 167-200 (450)
313 TIGR00137 gid_trmFO tRNA:m(5)U 97.1 0.00056 1.2E-08 73.2 4.8 33 89-121 1-34 (433)
314 PLN02529 lysine-specific histo 97.0 0.00084 1.8E-08 76.9 5.6 39 87-125 159-198 (738)
315 COG1249 Lpd Pyruvate/2-oxoglut 97.0 0.0064 1.4E-07 66.0 12.1 98 89-281 174-272 (454)
316 PLN02328 lysine-specific histo 97.0 0.00092 2E-08 77.0 5.7 39 87-125 237-276 (808)
317 PRK09564 coenzyme A disulfide 97.0 0.0082 1.8E-07 65.8 13.0 32 89-120 150-182 (444)
318 PTZ00058 glutathione reductase 97.0 0.0096 2.1E-07 66.8 13.4 32 89-120 238-270 (561)
319 TIGR01424 gluta_reduc_2 glutat 96.9 0.0086 1.9E-07 65.7 12.7 33 89-121 167-200 (446)
320 TIGR01438 TGR thioredoxin and 96.9 0.0091 2E-07 66.1 12.8 30 90-119 182-212 (484)
321 PTZ00153 lipoamide dehydrogena 96.9 0.011 2.3E-07 67.5 13.4 33 89-121 313-346 (659)
322 PLN02568 polyamine oxidase 96.9 0.0011 2.3E-08 74.1 5.3 38 88-125 5-48 (539)
323 PLN02507 glutathione reductase 96.9 0.01 2.2E-07 66.0 12.6 32 89-120 204-236 (499)
324 PRK06467 dihydrolipoamide dehy 96.9 0.011 2.5E-07 65.2 13.0 33 89-121 175-208 (471)
325 PRK14989 nitrite reductase sub 96.8 0.0097 2.1E-07 70.0 12.7 31 90-120 147-178 (847)
326 COG0446 HcaD Uncharacterized N 96.8 0.009 2E-07 64.5 11.7 36 88-123 136-172 (415)
327 PRK14727 putative mercuric red 96.8 0.013 2.7E-07 65.0 12.9 31 89-119 189-220 (479)
328 PRK14694 putative mercuric red 96.8 0.015 3.1E-07 64.3 13.2 31 89-119 179-210 (468)
329 TIGR03385 CoA_CoA_reduc CoA-di 96.8 0.011 2.5E-07 64.3 12.1 33 89-121 138-171 (427)
330 PRK06292 dihydrolipoamide dehy 96.8 0.017 3.7E-07 63.7 13.5 33 89-121 170-203 (460)
331 PRK07845 flavoprotein disulfid 96.8 0.013 2.8E-07 64.6 12.4 32 89-120 178-210 (466)
332 TIGR02374 nitri_red_nirB nitri 96.8 0.0092 2E-07 70.0 11.8 32 89-120 141-173 (785)
333 PRK06567 putative bifunctional 96.7 0.0016 3.4E-08 75.7 5.2 37 87-123 382-419 (1028)
334 TIGR01423 trypano_reduc trypan 96.7 0.014 3E-07 64.6 12.5 45 437-490 306-350 (486)
335 PRK08010 pyridine nucleotide-d 96.7 0.015 3.3E-07 63.7 12.6 31 90-120 160-191 (441)
336 PRK11749 dihydropyrimidine deh 96.7 0.017 3.6E-07 63.7 12.7 32 89-120 274-307 (457)
337 TIGR01318 gltD_gamma_fam gluta 96.7 0.019 4.2E-07 63.2 13.0 32 89-120 283-316 (467)
338 KOG1276 Protoporphyrinogen oxi 96.7 0.0019 4.1E-08 67.2 4.6 40 87-126 10-52 (491)
339 COG3634 AhpF Alkyl hydroperoxi 96.7 0.011 2.4E-07 59.8 9.8 55 218-276 393-447 (520)
340 PRK12778 putative bifunctional 96.6 0.018 4E-07 67.4 13.1 32 89-120 571-604 (752)
341 PRK12810 gltD glutamate syntha 96.6 0.014 2.9E-07 64.6 11.3 54 223-281 338-400 (471)
342 PRK07846 mycothione reductase; 96.6 0.018 4E-07 63.1 12.3 33 89-121 167-200 (451)
343 PRK13748 putative mercuric red 96.6 0.018 4E-07 65.2 12.6 31 89-119 271-302 (561)
344 COG0446 HcaD Uncharacterized N 96.6 0.0044 9.6E-08 66.9 7.2 54 436-490 253-309 (415)
345 TIGR03143 AhpF_homolog putativ 96.6 0.014 3E-07 65.9 11.2 32 89-120 144-176 (555)
346 COG2907 Predicted NAD/FAD-bind 96.6 0.0021 4.6E-08 65.0 4.1 41 88-128 8-48 (447)
347 KOG0685 Flavin-containing amin 96.5 0.0028 6E-08 67.0 4.7 37 88-124 21-59 (498)
348 PRK12770 putative glutamate sy 96.5 0.027 5.8E-07 59.8 12.1 32 89-120 173-206 (352)
349 PTZ00052 thioredoxin reductase 96.5 0.026 5.6E-07 62.8 12.4 30 90-119 184-214 (499)
350 PRK13512 coenzyme A disulfide 96.5 0.022 4.8E-07 62.3 11.7 32 89-120 149-181 (438)
351 TIGR03452 mycothione_red mycot 96.5 0.028 6.1E-07 61.8 12.4 32 89-120 170-202 (452)
352 PLN02546 glutathione reductase 96.4 0.032 7E-07 62.6 12.8 32 89-120 253-285 (558)
353 PRK12779 putative bifunctional 96.4 0.023 5.1E-07 67.6 12.1 31 89-119 448-479 (944)
354 KOG1335 Dihydrolipoamide dehyd 96.3 0.022 4.8E-07 58.6 9.7 102 89-281 212-314 (506)
355 PTZ00188 adrenodoxin reductase 96.3 0.0046 9.9E-08 67.1 5.2 38 88-125 39-78 (506)
356 COG1252 Ndh NADH dehydrogenase 96.3 0.023 4.9E-07 60.5 10.2 49 217-279 212-260 (405)
357 PLN02976 amine oxidase 96.3 0.0048 1E-07 74.0 5.5 41 86-126 691-732 (1713)
358 PLN03000 amine oxidase 96.3 0.0049 1.1E-07 71.3 5.4 40 87-126 183-223 (881)
359 PRK12775 putative trifunctiona 96.2 0.045 9.9E-07 65.8 12.9 51 228-281 622-686 (1006)
360 PTZ00318 NADH dehydrogenase-li 96.1 0.047 1E-06 59.5 11.7 47 218-279 232-278 (424)
361 KOG2495 NADH-dehydrogenase (ub 96.1 0.21 4.7E-06 52.4 15.4 35 86-120 53-88 (491)
362 COG0493 GltD NADPH-dependent g 95.9 0.0094 2E-07 64.8 5.0 36 89-124 124-160 (457)
363 KOG3855 Monooxygenase involved 95.8 0.088 1.9E-06 54.9 11.1 35 86-120 34-73 (481)
364 COG0492 TrxB Thioredoxin reduc 95.8 0.095 2.1E-06 54.1 11.5 92 88-278 143-235 (305)
365 KOG1336 Monodehydroascorbate/f 95.5 0.1 2.2E-06 55.5 10.7 99 89-281 214-313 (478)
366 KOG0404 Thioredoxin reductase 95.5 0.089 1.9E-06 50.3 9.1 57 218-278 196-252 (322)
367 TIGR01372 soxA sarcosine oxida 95.4 0.14 3E-06 61.9 12.7 52 223-281 360-411 (985)
368 PRK12814 putative NADPH-depend 95.1 0.22 4.8E-06 57.3 12.9 32 89-120 324-357 (652)
369 COG3486 IucD Lysine/ornithine 94.8 0.31 6.8E-06 51.0 11.5 140 91-278 190-337 (436)
370 PF00996 GDI: GDP dissociation 94.7 0.036 7.7E-07 59.8 4.7 41 86-126 2-43 (438)
371 PRK12771 putative glutamate sy 94.7 0.32 6.9E-06 55.1 12.6 32 89-120 268-301 (564)
372 KOG1800 Ferredoxin/adrenodoxin 94.5 0.042 9.1E-07 56.6 4.3 36 89-124 21-59 (468)
373 PRK06567 putative bifunctional 94.5 0.095 2.1E-06 61.4 7.6 51 228-281 653-728 (1028)
374 TIGR03169 Nterm_to_SelD pyridi 94.4 0.34 7.5E-06 51.5 11.4 48 219-281 196-243 (364)
375 PRK13984 putative oxidoreducta 94.3 0.39 8.5E-06 54.9 12.3 23 89-111 419-441 (604)
376 KOG0399 Glutamate synthase [Am 94.1 0.056 1.2E-06 62.5 4.5 39 86-124 1783-1822(2142)
377 TIGR01317 GOGAT_sm_gam glutama 93.9 0.52 1.1E-05 52.3 11.9 32 89-120 284-317 (485)
378 COG3486 IucD Lysine/ornithine 93.6 1.7 3.7E-05 45.8 14.0 37 86-122 3-41 (436)
379 TIGR03315 Se_ygfK putative sel 93.5 0.76 1.6E-05 54.9 12.8 33 88-120 666-701 (1012)
380 COG1206 Gid NAD(FAD)-utilizing 93.5 0.069 1.5E-06 54.0 3.5 34 89-122 4-38 (439)
381 PLN02852 ferredoxin-NADP+ redu 93.5 0.067 1.4E-06 58.9 3.8 50 437-494 374-423 (491)
382 PRK09853 putative selenate red 92.5 1.3 2.8E-05 52.9 12.7 32 89-120 669-703 (1019)
383 KOG3851 Sulfide:quinone oxidor 92.4 0.11 2.3E-06 52.5 3.1 35 86-120 37-74 (446)
384 KOG2755 Oxidoreductase [Genera 91.9 0.11 2.5E-06 50.8 2.6 50 416-465 277-326 (334)
385 KOG4405 GDP dissociation inhib 90.5 0.25 5.5E-06 51.4 3.6 39 86-124 6-45 (547)
386 PRK02705 murD UDP-N-acetylmura 89.3 0.34 7.4E-06 53.3 3.9 32 90-121 2-34 (459)
387 KOG2755 Oxidoreductase [Genera 89.3 0.25 5.4E-06 48.5 2.4 31 91-121 2-35 (334)
388 PRK01438 murD UDP-N-acetylmura 89.1 0.41 9E-06 53.0 4.4 32 89-120 17-49 (480)
389 PF01210 NAD_Gly3P_dh_N: NAD-d 88.8 0.44 9.6E-06 44.0 3.7 30 91-120 2-32 (157)
390 PF13738 Pyr_redox_3: Pyridine 88.6 0.47 1E-05 45.6 3.9 34 88-121 167-201 (203)
391 PF01593 Amino_oxidase: Flavin 88.5 0.37 7.9E-06 51.9 3.4 29 98-126 1-30 (450)
392 COG1251 NirB NAD(P)H-nitrite r 88.2 1.6 3.5E-05 49.2 8.0 52 220-282 193-244 (793)
393 PF13241 NAD_binding_7: Putati 88.0 0.44 9.6E-06 40.5 2.9 32 88-119 7-39 (103)
394 KOG2495 NADH-dehydrogenase (ub 87.8 2.2 4.8E-05 45.1 8.2 45 227-281 285-329 (491)
395 PF02558 ApbA: Ketopantoate re 87.8 0.62 1.3E-05 42.5 3.9 30 91-120 1-31 (151)
396 PF01488 Shikimate_DH: Shikima 87.7 0.74 1.6E-05 41.3 4.3 32 88-119 12-45 (135)
397 PRK15116 sulfur acceptor prote 87.5 0.76 1.7E-05 46.3 4.6 38 88-125 30-69 (268)
398 COG5044 MRS6 RAB proteins gera 87.5 0.86 1.9E-05 47.1 4.9 38 87-124 5-43 (434)
399 COG0569 TrkA K+ transport syst 87.0 0.71 1.5E-05 45.5 4.0 31 90-120 2-33 (225)
400 PF02737 3HCDH_N: 3-hydroxyacy 86.8 0.64 1.4E-05 44.0 3.5 30 91-120 2-32 (180)
401 TIGR01470 cysG_Nterm siroheme 86.8 0.8 1.7E-05 44.4 4.2 31 89-119 10-41 (205)
402 TIGR00292 thiazole biosynthesi 86.7 0.71 1.5E-05 46.4 4.0 47 444-492 207-253 (254)
403 PF01134 GIDA: Glucose inhibit 86.4 1 2.2E-05 47.9 5.0 44 441-494 346-390 (392)
404 PF01262 AlaDh_PNT_C: Alanine 85.7 1 2.2E-05 42.1 4.3 33 88-120 20-53 (168)
405 COG1635 THI4 Ribulose 1,5-bisp 85.5 0.71 1.5E-05 44.4 3.0 48 444-493 213-260 (262)
406 TIGR02355 moeB molybdopterin s 85.4 1.2 2.7E-05 44.2 4.9 39 88-126 24-64 (240)
407 KOG4716 Thioredoxin reductase 85.3 1.6 3.5E-05 44.6 5.5 34 89-122 199-233 (503)
408 PRK04176 ribulose-1,5-biphosph 84.9 0.99 2.1E-05 45.4 4.0 48 444-493 208-255 (257)
409 KOG3923 D-aspartate oxidase [A 84.9 2.1 4.6E-05 43.0 6.1 36 88-123 3-46 (342)
410 KOG1439 RAB proteins geranylge 84.9 0.46 9.9E-06 49.6 1.5 40 87-126 3-43 (440)
411 TIGR02354 thiF_fam2 thiamine b 84.8 1.1 2.4E-05 43.2 4.1 35 88-122 21-57 (200)
412 TIGR00518 alaDH alanine dehydr 84.7 1.1 2.3E-05 47.8 4.3 33 88-120 167-200 (370)
413 PRK09424 pntA NAD(P) transhydr 84.5 0.95 2.1E-05 50.0 3.9 33 88-120 165-198 (509)
414 PRK14106 murD UDP-N-acetylmura 84.2 1.1 2.3E-05 49.2 4.2 32 89-120 6-38 (450)
415 COG0686 Ald Alanine dehydrogen 84.0 0.86 1.9E-05 46.0 3.0 34 87-120 167-201 (371)
416 PF00899 ThiF: ThiF family; I 83.9 1.3 2.8E-05 39.7 3.9 34 89-122 3-38 (135)
417 COG3075 GlpB Anaerobic glycero 83.9 0.45 9.7E-06 48.4 0.9 33 88-120 2-35 (421)
418 PRK12475 thiamine/molybdopteri 83.9 1.4 3.1E-05 46.2 4.8 39 88-126 24-64 (338)
419 PRK06718 precorrin-2 dehydroge 83.5 1.4 3E-05 42.6 4.2 31 89-119 11-42 (202)
420 cd01487 E1_ThiF_like E1_ThiF_l 83.3 1.5 3.4E-05 41.2 4.3 32 91-122 2-35 (174)
421 PRK08328 hypothetical protein; 82.9 1.6 3.5E-05 43.2 4.4 35 88-122 27-63 (231)
422 PRK06719 precorrin-2 dehydroge 82.8 1.5 3.3E-05 40.4 4.0 29 89-117 14-43 (157)
423 PRK07688 thiamine/molybdopteri 82.3 1.6 3.5E-05 45.8 4.4 37 88-124 24-62 (339)
424 PRK12549 shikimate 5-dehydroge 82.1 1.5 3.2E-05 44.9 3.9 31 89-119 128-160 (284)
425 PRK08223 hypothetical protein; 82.1 2 4.2E-05 43.7 4.7 38 88-125 27-66 (287)
426 PRK08644 thiamine biosynthesis 81.9 1.9 4.1E-05 42.0 4.5 36 88-123 28-65 (212)
427 TIGR02356 adenyl_thiF thiazole 81.8 1.9 4E-05 41.7 4.3 36 87-122 20-57 (202)
428 PF02254 TrkA_N: TrkA-N domain 81.7 1.7 3.7E-05 37.5 3.7 30 91-120 1-31 (116)
429 PLN02661 Putative thiazole syn 81.6 1.6 3.4E-05 45.8 3.9 49 444-494 281-329 (357)
430 PRK05708 2-dehydropantoate 2-r 81.1 2.1 4.5E-05 44.3 4.7 32 89-120 3-35 (305)
431 COG4716 Myosin-crossreactive a 81.1 0.94 2E-05 46.8 2.0 39 88-126 22-65 (587)
432 cd01483 E1_enzyme_family Super 81.1 2.2 4.8E-05 38.5 4.4 34 91-124 2-37 (143)
433 PF03721 UDPG_MGDP_dh_N: UDP-g 81.0 1.4 3E-05 42.0 3.1 30 90-119 2-32 (185)
434 PRK06129 3-hydroxyacyl-CoA deh 81.0 1.6 3.6E-05 45.2 3.9 31 90-120 4-35 (308)
435 COG1179 Dinucleotide-utilizing 80.8 2.2 4.7E-05 41.8 4.2 39 88-126 30-70 (263)
436 PRK05690 molybdopterin biosynt 80.6 1.9 4.1E-05 43.1 4.0 37 88-124 32-70 (245)
437 COG1063 Tdh Threonine dehydrog 80.2 1.7 3.7E-05 45.9 3.8 31 90-120 171-203 (350)
438 cd00401 AdoHcyase S-adenosyl-L 79.7 2.1 4.5E-05 46.1 4.2 33 88-120 202-235 (413)
439 PRK04148 hypothetical protein; 79.5 1.5 3.2E-05 39.1 2.5 31 89-120 18-49 (134)
440 cd05311 NAD_bind_2_malic_enz N 79.3 2.6 5.6E-05 41.5 4.4 32 89-120 26-61 (226)
441 PRK14027 quinate/shikimate deh 79.2 2.2 4.7E-05 43.6 4.0 31 89-119 128-160 (283)
442 PRK12550 shikimate 5-dehydroge 79.2 2.3 5E-05 43.1 4.2 31 90-120 124-156 (272)
443 TIGR03378 glycerol3P_GlpB glyc 79.2 1.6 3.5E-05 46.9 3.2 32 89-120 1-33 (419)
444 PRK12548 shikimate 5-dehydroge 79.1 2.6 5.7E-05 43.2 4.6 31 89-119 127-159 (289)
445 PRK06249 2-dehydropantoate 2-r 78.8 2.9 6.3E-05 43.4 5.0 32 89-120 6-38 (313)
446 cd00757 ThiF_MoeB_HesA_family 78.6 2.4 5.3E-05 41.8 4.1 38 88-125 21-60 (228)
447 PRK08293 3-hydroxybutyryl-CoA 78.6 2.3 5.1E-05 43.5 4.1 30 90-119 5-35 (287)
448 cd00755 YgdL_like Family of ac 78.4 2.4 5.2E-05 41.9 3.9 37 88-124 11-49 (231)
449 cd01485 E1-1_like Ubiquitin ac 78.4 3.3 7.1E-05 39.9 4.8 37 88-124 19-57 (198)
450 TIGR01809 Shik-DH-AROM shikima 78.2 2.6 5.6E-05 43.1 4.2 32 88-119 125-158 (282)
451 PRK09260 3-hydroxybutyryl-CoA 77.9 2.6 5.5E-05 43.2 4.1 31 90-120 3-34 (288)
452 COG1748 LYS9 Saccharopine dehy 77.8 2.7 5.8E-05 44.7 4.2 31 90-120 3-35 (389)
453 cd01484 E1-2_like Ubiquitin ac 77.7 2.9 6.2E-05 41.4 4.2 35 91-125 2-38 (234)
454 PRK12921 2-dehydropantoate 2-r 77.1 2.9 6.4E-05 43.0 4.4 29 90-118 2-31 (305)
455 cd01080 NAD_bind_m-THF_DH_Cycl 76.6 3.3 7.2E-05 38.7 4.1 33 87-119 43-77 (168)
456 TIGR00561 pntA NAD(P) transhyd 76.5 2.9 6.3E-05 46.1 4.2 33 88-120 164-197 (511)
457 PRK06522 2-dehydropantoate 2-r 76.4 3 6.6E-05 42.9 4.3 30 90-119 2-32 (304)
458 PRK02472 murD UDP-N-acetylmura 76.2 2.7 5.8E-05 46.0 4.0 31 90-120 7-38 (447)
459 PRK05597 molybdopterin biosynt 75.9 3.4 7.3E-05 43.8 4.4 38 88-125 28-67 (355)
460 cd05292 LDH_2 A subgroup of L- 75.7 3.3 7.1E-05 43.0 4.2 31 90-120 2-35 (308)
461 cd01492 Aos1_SUMO Ubiquitin ac 75.5 4.1 8.8E-05 39.2 4.5 36 87-122 20-57 (197)
462 cd01486 Apg7 Apg7 is an E1-lik 75.0 3.6 7.8E-05 42.0 4.1 36 90-125 1-38 (307)
463 PRK07819 3-hydroxybutyryl-CoA 74.8 3.2 6.9E-05 42.5 3.8 31 90-120 7-38 (286)
464 TIGR01381 E1_like_apg7 E1-like 74.8 3.4 7.4E-05 46.5 4.2 38 88-125 338-377 (664)
465 PRK07878 molybdopterin biosynt 74.6 3.7 8.1E-05 44.1 4.4 40 87-126 41-82 (392)
466 PRK05600 thiamine biosynthesis 74.3 3.7 7.9E-05 43.7 4.2 38 88-125 41-80 (370)
467 PRK07530 3-hydroxybutyryl-CoA 74.2 3.5 7.6E-05 42.3 4.0 30 90-119 6-36 (292)
468 PRK07066 3-hydroxybutyryl-CoA 74.0 3.7 7.9E-05 42.7 4.0 31 90-120 9-40 (321)
469 PRK08762 molybdopterin biosynt 73.5 3.9 8.5E-05 43.7 4.3 38 87-124 134-173 (376)
470 PRK06035 3-hydroxyacyl-CoA deh 73.5 3.7 7.9E-05 42.2 3.9 31 90-120 5-36 (291)
471 KOG1346 Programmed cell death 73.3 8.3 0.00018 40.7 6.2 77 218-312 397-473 (659)
472 PRK12749 quinate/shikimate deh 73.2 4.2 9.1E-05 41.6 4.2 32 89-120 125-158 (288)
473 PRK06153 hypothetical protein; 72.8 3.7 8E-05 43.4 3.7 41 88-128 176-218 (393)
474 PRK05562 precorrin-2 dehydroge 72.6 4.5 9.8E-05 39.6 4.0 32 88-119 25-57 (223)
475 COG0169 AroE Shikimate 5-dehyd 72.0 4.7 0.0001 41.0 4.2 32 89-120 127-160 (283)
476 TIGR00936 ahcY adenosylhomocys 71.9 4.4 9.5E-05 43.5 4.1 34 88-121 195-229 (406)
477 cd01488 Uba3_RUB Ubiquitin act 71.9 4.8 0.0001 41.2 4.2 36 90-125 1-38 (291)
478 PRK08306 dipicolinate synthase 71.8 4.7 0.0001 41.5 4.2 33 88-120 152-185 (296)
479 KOG0024 Sorbitol dehydrogenase 71.6 6.3 0.00014 40.4 4.8 32 87-118 169-202 (354)
480 PRK07411 hypothetical protein; 71.2 4.9 0.00011 43.2 4.3 39 87-125 37-77 (390)
481 COG2072 TrkA Predicted flavopr 70.9 5.1 0.00011 43.8 4.5 34 88-121 175-209 (443)
482 PRK04308 murD UDP-N-acetylmura 70.8 4.8 0.0001 44.1 4.3 31 90-120 7-38 (445)
483 cd01489 Uba2_SUMO Ubiquitin ac 70.7 5.2 0.00011 41.4 4.2 35 90-124 1-37 (312)
484 PLN02520 bifunctional 3-dehydr 70.5 4.5 9.6E-05 45.3 4.0 31 89-119 380-411 (529)
485 PRK00258 aroE shikimate 5-dehy 70.1 5.4 0.00012 40.6 4.2 31 89-119 124-156 (278)
486 PF00670 AdoHcyase_NAD: S-aden 69.8 4.9 0.00011 37.1 3.4 33 89-121 24-57 (162)
487 COG1004 Ugd Predicted UDP-gluc 69.8 5.1 0.00011 42.2 3.9 31 90-120 2-33 (414)
488 PTZ00363 rab-GDP dissociation 69.7 18 0.00038 39.6 8.3 56 214-278 232-287 (443)
489 PRK05808 3-hydroxybutyryl-CoA 69.5 5.4 0.00012 40.7 4.1 31 90-120 5-36 (282)
490 COG0493 GltD NADPH-dependent g 69.4 4.5 9.7E-05 44.3 3.6 47 436-491 402-449 (457)
491 PRK08229 2-dehydropantoate 2-r 69.2 5.7 0.00012 41.7 4.3 30 90-119 4-34 (341)
492 PLN02172 flavin-containing mon 69.0 4.3 9.4E-05 44.6 3.5 32 89-120 205-237 (461)
493 KOG2018 Predicted dinucleotide 68.9 5 0.00011 40.6 3.4 32 90-121 76-109 (430)
494 cd01491 Ube1_repeat1 Ubiquitin 68.7 6.5 0.00014 40.1 4.4 36 87-122 18-55 (286)
495 PRK03369 murD UDP-N-acetylmura 68.3 5.3 0.00011 44.3 4.0 30 90-119 14-44 (488)
496 TIGR00507 aroE shikimate 5-deh 68.3 6 0.00013 40.1 4.1 31 89-119 118-149 (270)
497 cd05291 HicDH_like L-2-hydroxy 68.2 6.2 0.00014 40.8 4.3 31 90-120 2-35 (306)
498 TIGR02853 spore_dpaA dipicolin 67.7 5.9 0.00013 40.6 3.9 33 88-120 151-184 (287)
499 PRK05476 S-adenosyl-L-homocyst 67.6 5.8 0.00013 42.8 4.0 34 88-121 212-246 (425)
500 cd01075 NAD_bind_Leu_Phe_Val_D 67.5 6.5 0.00014 37.9 3.9 31 89-119 29-60 (200)
No 1
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=100.00 E-value=6.5e-109 Score=846.65 Aligned_cols=504 Identities=48% Similarity=0.724 Sum_probs=450.8
Q ss_pred CEEEECcchHHHHHHHHHHhcCCeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHHHHHHHH
Q 006387 90 DFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCTE 169 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 169 (647)
||+|||+|+|||++|+.|++.-+|+||.|.+...++|.|+||||.+..+++|+++.|+.||+.+|.++||++.++.++.+
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~~ 88 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPSFRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVSE 88 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCCCcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHh
Confidence 99999999999999999998769999999999889999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCC
Q 006387 170 GPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPD 249 (647)
Q Consensus 170 ~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~ 249 (647)
++++++||.++|++|+++.+|.+.+..+|+|+.+|++|..+.+|+.++.+|.++++++++|++++++.+.+|+.+++.
T Consensus 89 ~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~-- 166 (518)
T COG0029 89 APEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGI-- 166 (518)
T ss_pred HHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCc--
Confidence 999999999999999999999999999999999999999999999999999999999899999999999999998542
Q ss_pred CeEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchHHHHHHHcCCeecCccccccccccccCCCCCCC
Q 006387 250 AVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIK 329 (647)
Q Consensus 250 ~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g~~~~ 329 (647)
.+.|+.+.+... +...|+|+.|||||||.+++|..++||..++|||++||+++|+.+.||||+|||||.+..++.
T Consensus 167 -~~~Gv~~~~~~~-~~~~~~a~~vVLATGG~g~ly~~TTNp~~~~GdGIamA~rAGa~v~DlEFvQFHPT~l~~~~~--- 241 (518)
T COG0029 167 -GVAGVLVLNRNG-ELGTFRAKAVVLATGGLGGLYAYTTNPKGSTGDGIAMAWRAGAAVADLEFVQFHPTALYIPQR--- 241 (518)
T ss_pred -eEeEEEEecCCC-eEEEEecCeEEEecCCCcccccccCCCccccccHHHHHHHcCCeecCccceeeccceecCCCC---
Confidence 456999986433 678899999999999999999999999999999999999999999999999999999876432
Q ss_pred CCCCCCccceeeecccCCCceEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCCeEEEecCCCChhHHHhhChh
Q 006387 330 PKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILSHFPN 409 (647)
Q Consensus 330 p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~l~~rd~~~~~i~~~~~~~~~~~v~ld~~~~~~~~l~~~~~~ 409 (647)
..+|++|++||+|++|+|.+|+|||..|+|.+||+|||+|+++|+.|+++++.. ||||+++++.+.+.++||+
T Consensus 242 ------~~~LiSEAVRGEGA~L~~~~GeRFm~~~~p~~ELAPRDVVARAI~~e~~~~g~~-V~LD~s~~~~~~~~~rFP~ 314 (518)
T COG0029 242 ------RAFLISEAVRGEGAILVNEDGERFMPDYHPRGELAPRDVVARAIDAEMKRGGAD-VFLDISHIPGDFFERRFPT 314 (518)
T ss_pred ------ccceeehhhhcCccEEECCCCCccccCCCCccccchHHHHHHHHHHHHHhcCCe-EEEeccCCCchhhhhhCcH
Confidence 278999999999999999999999999999999999999999999999997644 9999999998889999999
Q ss_pred HHHHHHHcCCCCCCCCeeeeeeeceecCceEECCCCCcccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHH
Q 006387 410 IAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSI 489 (647)
Q Consensus 410 ~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~ 489 (647)
+++.|.+.|+||.++||||.|++||+||||.||.++||+||||||+|||+|+|+||||||+||||+||+|||.+|+++++
T Consensus 315 I~~~c~~~GiD~~r~~IPV~PaaHY~mGGI~vD~~GrTsi~gLYAiGEvA~TGlHGANRLASNSLLE~vV~g~~aA~~i~ 394 (518)
T COG0029 315 IYAACLKAGIDPTREPIPVVPAAHYTMGGIAVDANGRTSIPGLYAIGEVACTGLHGANRLASNSLLECLVFGKRAAEDIA 394 (518)
T ss_pred HHHHHHHcCCCcccCccCccchhheecccEEECCCCcccCcccEEeeeecccccccchhhhhhhHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhhhcccccccccccccccccCcccccccchhhhhcHHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhh
Q 006387 490 DHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLF 569 (647)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~al~~l~~l~~~~~~~~~ 569 (647)
...............+. .... ......-+++||++||+|+||+|+.++|++++.+|+.++++....
T Consensus 395 ~~~~~~~~~~~~~~~~~------~~~~------~~~~~~~~~~Lr~~m~~~~GI~R~~~~L~~~~~~l~~~~~~~~~~-- 460 (518)
T COG0029 395 GRLAPAPREAPTLPVRD------DYEE------NVLLAHDRHELRRLMWRYVGIVRTAKGLERAIRRLEPLQQENDEY-- 460 (518)
T ss_pred cccccCccCCCCCCccc------cccc------ccccccCHHHHHHHHHhhcceEechHHHHHHHHHHHhhhhhhhhc--
Confidence 76532221000000000 0000 011122357899999999999999999999999999998775532
Q ss_pred ccCcccccchHHHHHHHhHHHHHHHHHHHHHhcCcCcccccccCCCCCccCCCCCeeecCC
Q 006387 570 EHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTIILPS 630 (647)
Q Consensus 570 ~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~~~~~~~~ 630 (647)
.+.+. +-+|++++|++|+++||+|+||||+|||.|||.+.+++...+++.+.
T Consensus 461 -----~~~~~----~~~nl~~vA~li~~~Al~R~ESRG~H~r~D~P~~~~~~~~~~~~~~~ 512 (518)
T COG0029 461 -----ANFRV----SNRNLALVALLIARAALLRTESRGAHFRLDYPDTLPEAQRRILVTLN 512 (518)
T ss_pred -----ccccc----cccCHHHHHHHHHHHHHhccccccceecccCCCcCccccCceEEecc
Confidence 01111 12899999999999999999999999999999999998888877653
No 2
>PLN02815 L-aspartate oxidase
Probab=100.00 E-value=6.9e-100 Score=843.49 Aligned_cols=561 Identities=81% Similarity=1.240 Sum_probs=479.6
Q ss_pred CCCccccCEEEECcchHHHHHHHHHHhcCCeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHH
Q 006387 83 DGSVKYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDET 162 (647)
Q Consensus 83 ~~~~~~~DVlVIGgG~AGl~AA~~aa~~G~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~ 162 (647)
..++.++||||||+|.|||+||+.|++.|+|+||||....+|+|.+++||+++..++.|+++.|++|+++.+.+++|+++
T Consensus 24 ~~~~~~~DVlVVG~G~AGl~AAl~Aae~G~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~~l 103 (594)
T PLN02815 24 DESTKYFDFLVIGSGIAGLRYALEVAEYGTVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDEET 103 (594)
T ss_pred cCcccccCEEEECccHHHHHHHHHHhhCCCEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcHHH
Confidence 34466899999999999999999999989999999999999999999999998888889999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEE
Q 006387 163 VRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLL 242 (647)
Q Consensus 163 ~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~ 242 (647)
++.+++++++.++||.++|++|.+..+|.+.....++|+++|+++..+.+|..++..|.+.+++.+||+|++++.+++|+
T Consensus 104 v~~~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~Li 183 (594)
T PLN02815 104 VRVVCTEGPERVKELIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAIDLL 183 (594)
T ss_pred HHHHHHHHHHHHHHHHHhCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhheee
Confidence 99999999999999999999999888888888889999999999988889999999999999876799999999999999
Q ss_pred ecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchHHHHHHHcCCeecCcccccccccccc
Q 006387 243 TTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALA 322 (647)
Q Consensus 243 ~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~ 322 (647)
+++++...+|+||.+.+..+|+.+.|.||+|||||||++++|+.++|+..+||||+.||+++||.+.||||+||||+.+.
T Consensus 184 ~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~~~~ttn~~~~tGDGi~mA~~aGA~l~~mefvQfhPt~~~ 263 (594)
T PLN02815 184 TSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGIAMAHRAQAVVSNMEFVQFHPTALA 263 (594)
T ss_pred eecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcceeeCCCCCCCCCcccHHHHHHHHcCCcEecCceeEEeeeeec
Confidence 86443101399999988778888899999999999999999999999999999999999999999999999999999886
Q ss_pred CCCCCCCCCCCCCccceeeecccCCCceEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCCeEEEecCCCChhH
Q 006387 323 DEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEK 402 (647)
Q Consensus 323 ~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~l~~rd~~~~~i~~~~~~~~~~~v~ld~~~~~~~~ 402 (647)
..+.+..|.......++++++++++|++++|.+|+|||++|++..++++||+++++|..++.+++..++|||.++.+.+.
T Consensus 264 ~~~~~~~~~~~~~~~~l~~ea~rg~G~ilvN~~GeRF~~~y~~~~ela~rd~va~ai~~e~~~~~~~~v~lD~~~~~~~~ 343 (594)
T PLN02815 264 DEGLPIKPAKARENAFLITEAVRGDGGILYNLAGERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPREE 343 (594)
T ss_pred CCCccccccccccccceeehhhccCCcEEECCCCCCCccccCcccccCChHHHHHHHHHHHHhcCCCEEEEeCCCCCHHH
Confidence 54422223221223578899999999999999999999999988899999999999999997765568999999998888
Q ss_pred HHhhChhHHHHHHHcCCCCCCCCeeeeeeeceecCceEECCCCCcccCceeecccccCCCCCCCCccchhhhHHHHHHHH
Q 006387 403 ILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFAR 482 (647)
Q Consensus 403 l~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~ 482 (647)
+.+++|++.+.+.+.|+|+.++|++|.|.+||+||||.||.+++|+|||||||||++|+|+||+|||+||||++|+|||+
T Consensus 344 ~~~~~p~i~~~~~~~GiD~~k~pi~v~P~~hyt~GGi~vD~~~~t~IpGLyAaGE~a~~G~hGanrl~gnsl~e~lvfGr 423 (594)
T PLN02815 344 ILSHFPNIAAECLKRGLDITKQPIPVVPAAHYMCGGVRTGLQGETNVQGLYAAGEVACTGLHGANRLASNSLLEALVFAR 423 (594)
T ss_pred HHHHCHHHHHHHHHhCcCCCCCceeeechhcEeCCCeeECCCCceecCCEEecccccccCCCCCCcchhhHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred HHHHHHHHhhhcccccccccccccccccCcccccccchhhhhcHHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHH
Q 006387 483 RAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEA 562 (647)
Q Consensus 483 ~Ag~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~al~~l~~l~~ 562 (647)
+||++|++++.....+............+..............+.+++.+||++||+|+||+|++++|+++|++|++|++
T Consensus 424 ~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l~~l~~ 503 (594)
T PLN02815 424 RAVQPSIDHMARALRDVSAAAAWARPVAPTALADSVMDEILEWTAVVRKELQRIMWNYVGIVRSTERLETAERKLEELEA 503 (594)
T ss_pred HHHHHHHHHhhcccccccccccccccccccchhhhhhhhhccchHHHHHHHHHHHHhcCCEEEcHHHHHHHHHHHHHHHH
Confidence 99999988764321111000000000000000000000111135678899999999999999999999999999999998
Q ss_pred HHHHhhhccCcccccchHHHHHHHhHHHHHHHHHHHHHhcCcCcccccccCCCCCccCCCCCeeecCCCc-ccccccccc
Q 006387 563 EWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTIILPSLV-NCTWSSRQL 641 (647)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~~~~~~~~~~-~~~~~~~~~ 641 (647)
++........++.+.++++++|++||+++|++|++|||+|+||||+|||+|||++||+|.+++++++.-+ -.+|+++.|
T Consensus 504 ~~~~~~~~~~~~~~~~~~~~~el~~~l~~a~~i~~aal~R~ESRG~H~R~D~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (594)
T PLN02815 504 EWEAILFRHGWKPTMVGLEACEMRNLFCVAKLVVSSALARKESRGLHYTTDYPELVESERKPTVIFPSVPTAGTWSSRSL 583 (594)
T ss_pred HHHHhhcccccccchhHHHHHHHHhHHHHHHHHHHHHHhCCCCcceeecCCCCccChhHhcCEEEeeccCcccccCcccc
Confidence 8765433333433447789999999999999999999999999999999999999999777887775444 489999999
Q ss_pred cc
Q 006387 642 HK 643 (647)
Q Consensus 642 ~~ 643 (647)
|.
T Consensus 584 ~~ 585 (594)
T PLN02815 584 HR 585 (594)
T ss_pred cc
Confidence 96
No 3
>PRK07395 L-aspartate oxidase; Provisional
Probab=100.00 E-value=1.3e-93 Score=791.22 Aligned_cols=528 Identities=40% Similarity=0.634 Sum_probs=449.1
Q ss_pred CccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHH
Q 006387 85 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETV 163 (647)
Q Consensus 85 ~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~ 163 (647)
.+.++||||||+|.||++||++|++ | +|+||||....+|+|.+++||+.+..++.|+++.|++|+++.+.+++|++++
T Consensus 6 ~~~e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~~d~~lv 84 (553)
T PRK07395 6 LPSQFDVLVVGSGAAGLYAALCLPS-HLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLCDPEAV 84 (553)
T ss_pred ccccCCEEEECccHHHHHHHHHhhc-CCCEEEEEccCCCCCchhhhcccceecccCCCCHHHHHHHHHHhcCCCCCHHHH
Confidence 4568999999999999999999975 8 9999999999889999999999988888899999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEe
Q 006387 164 RVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLT 243 (647)
Q Consensus 164 ~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~ 243 (647)
+.+++++++.++||.++|++|++. ++.+....+++|+.+|+++..+.+|..++..|.+.+.++.||+|++++.+++|+.
T Consensus 85 ~~~~~~s~~~i~wL~~~Gv~f~~~-~~~~~~~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~ 163 (553)
T PRK07395 85 RFLVEQAPEAIASLVEMGVAFDRH-GQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIISQALALSLWL 163 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCeeecC-CCceeeecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcEEEECcChhhhee
Confidence 999999999999999999999865 4555666778999999999888899999999999987656999999999999998
Q ss_pred cC-CCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchHHHHHHHcCCeecCcccccccccccc
Q 006387 244 TL-DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALA 322 (647)
Q Consensus 244 ~~-~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~ 322 (647)
++ ++ +|+||.+.+ +|+...|+||.|||||||++.+|..+++++.+||||+.||+++||.+.+|||+||||+.+.
T Consensus 164 ~~~~g---~v~Gv~~~~--~g~~~~i~AkaVILATGG~~~~~~~~tn~~~~tGdGi~mA~~aGA~l~~me~~q~hpt~~~ 238 (553)
T PRK07395 164 EPETG---RCQGISLLY--QGQITWLRAGAVILATGGGGQVFAQTTNPAVSTGDGVALAWRAGAQLRDLEFFQFHPTALT 238 (553)
T ss_pred cCCCC---EEEEEEEEE--CCeEEEEEcCEEEEcCCCCccccCCccCccchhhHHHHHHHHcCCCccCCcceeEEeeeec
Confidence 74 35 899998764 5777789999999999999999999999999999999999999999999999999998775
Q ss_pred CCCCCCCCCCCCCccceeeecccCCCceEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCC----CeEEEecCCC
Q 006387 323 DEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNE----KYVLLDISHK 398 (647)
Q Consensus 323 ~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~l~~rd~~~~~i~~~~~~~~~----~~v~ld~~~~ 398 (647)
.++. ..++++++++++|++++|.+|+|||++|++..|+++||++++++..++.+++. .+||+|++++
T Consensus 239 ~~~~---------~~~l~~e~~rg~g~ilvn~~G~RF~~~y~~~~El~~rd~v~~ai~~e~~~~~~~~~~~~v~ld~~~~ 309 (553)
T PRK07395 239 KPGA---------PRFLISEAVRGEGAHLVDAQGRRFAFDYHPAGELAPRDVVSRAIFSHLQKTATDPATAHVWLDLRPI 309 (553)
T ss_pred CCCC---------CceeeehhccCCcEEEECCCCCCCccccCcccccccHHHHHHHHHHHHHhcCCCCCCceEEEecccc
Confidence 3321 14678899999999999999999999999989999999999999999876532 3799999999
Q ss_pred ChhHHHhhChhHHHHHHHcCCCCCCCCeeeeeeeceecCceEECCCCCcccCceeecccccCCCCCCCCccchhhhHHHH
Q 006387 399 PTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEAL 478 (647)
Q Consensus 399 ~~~~l~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~ 478 (647)
+.+.+.++||++.+++.+.|+|+.++|++|.|++||+||||+||.++||+||||||||||+|+|+||+|||+||||++++
T Consensus 310 ~~~~~~~~~p~i~~~~~~~giD~~~~~i~v~P~~h~~~GGi~vd~~~~t~I~GLyAaGE~a~~G~hGanRL~gnsl~e~l 389 (553)
T PRK07395 310 PAERIRRRFPNIIRVCQKWGIDVFQEPIPVAPAAHYWMGGVVTDLNNQTSIPGLYAVGETASTGVHGANRLASNSLLECL 389 (553)
T ss_pred chHHHHHhhHHHHHHHHHcCCCcCCCEeEEecceeecCCCeeECCCCcccCCCEEECccccccCCCcccchHHHHHHHHH
Confidence 98888999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccccccccccccccccCcccccccchhhhhcHHHHHHHHHHHHHhcCccccCHHHHHHHHHHHH
Q 006387 479 VFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRID 558 (647)
Q Consensus 479 v~G~~Ag~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~al~~l~ 558 (647)
|||++||+.+++.......+.. ..... +. ..........+.+++++||++||+++||+|++++|++++++|+
T Consensus 390 vfG~~a~~~~~~~~~~~~~~~~-~~~~~----~~---~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l~ 461 (553)
T PRK07395 390 VFAAQLAQLELPIEPPASPDLP-PISFI----ID---ASQWKNEQEQIQRIRQELPELVWQSAGICREADTLERAIAQVE 461 (553)
T ss_pred HHHHHHHHHHHhhcccCCCccc-chhhH----HH---HhhhhccCCCHHHHHHHHHHHHHhcccEEEcHHHHHHHHHHHH
Confidence 9999999998753211100000 00000 00 0000011123678889999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCccc--------------ccchHHHHHHHhHHHHHHHHHHHHHhcCcCcccccccCCCCCccCCCCC
Q 006387 559 ELEAEWETYLFEHGWEQ--------------TFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLP 624 (647)
Q Consensus 559 ~l~~~~~~~~~~~~~~~--------------~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~~ 624 (647)
+|++++..+........ +.++.+++|++||+++|++|++|||+|+||||+|||+|||++|++|.++
T Consensus 462 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~i~~~al~R~ESRG~H~R~D~p~~~~~~~~~ 541 (553)
T PRK07395 462 QWQQQLAALPLSQFLANLPPGQTVSFNGPDAEQQLRLWAETRNLLDIAYLILKSALFRTESRGGHYRLDYPQTDPAWQVH 541 (553)
T ss_pred HHHHHHhhccccccccccccccccccccccchhhHHHHHHHHhHHHHHHHHHHHHHhCCCCccceecCCCCccChhhhce
Confidence 99887765321110000 0125667899999999999999999999999999999999998876555
Q ss_pred eeecCCCccccccccc
Q 006387 625 TIILPSLVNCTWSSRQ 640 (647)
Q Consensus 625 ~~~~~~~~~~~~~~~~ 640 (647)
++++ .++|...|
T Consensus 542 ~~~~----~~~~~~~~ 553 (553)
T PRK07395 542 TLVQ----GERWWQSP 553 (553)
T ss_pred EEEE----cCEEecCC
Confidence 5444 66776543
No 4
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=100.00 E-value=1.3e-93 Score=795.64 Aligned_cols=521 Identities=33% Similarity=0.495 Sum_probs=455.3
Q ss_pred cccCEEEECcchHHHHHHHHHHhc--C-CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHH
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETV 163 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~--G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~ 163 (647)
.++||||||||+|||+||+.|++. | +|+||||....+|++.+++||+++..++.|+++.|++|+++.+.+++|++++
T Consensus 2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv 81 (580)
T TIGR01176 2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVV 81 (580)
T ss_pred cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHH
Confidence 468999999999999999999986 6 9999999999999999999999888888999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEe
Q 006387 164 RVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLT 243 (647)
Q Consensus 164 ~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~ 243 (647)
+.+++++++.++||+++|++|+++++|.+....+++|+++|+++..+.+|..++..|.+++.+.++|++++++.+++|+.
T Consensus 82 ~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~ 161 (580)
T TIGR01176 82 EYFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLV 161 (580)
T ss_pred HHHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEEEEe
Confidence 99999999999999999999999889988788889999999999988899999999999887766899999999999998
Q ss_pred cCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchHHHHHHHcCCeecCccccccccccccC
Q 006387 244 TLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALAD 323 (647)
Q Consensus 244 ~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~ 323 (647)
+ ++ +|+||++.+..+|+...|.||.|||||||++++|+.++++..+||||+.||+++||.+.+|||+||||+.+..
T Consensus 162 ~-~g---~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~t~~~~~tGdG~~mA~~aGA~l~~me~~q~hPt~~~~ 237 (580)
T TIGR01176 162 D-DG---RVCGLVAIEMAEGRLVTILADAVVLATGGAGRVYPFNTNGGIVTGDGMAMAFRHGVPLRDMEFVQYHPTGLPG 237 (580)
T ss_pred e-CC---EEEEEEEEEcCCCcEEEEecCEEEEcCCCCcccccCCCCCCCcCcHHHHHHHHcCCCccCCcceEEEccccCC
Confidence 6 56 8999999887788888999999999999999999999999999999999999999999999999999987642
Q ss_pred CCCCCCCCCCCCccceeeecccCCCceEEeCCCCccccccc---------cc---cccCchhHHHHHHHHHHHhcC----
Q 006387 324 EGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYD---------ER---AELAPRDVVARSIDDQLKKRN---- 387 (647)
Q Consensus 324 ~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~---------~~---~~l~~rd~~~~~i~~~~~~~~---- 387 (647)
. .++++++++++|++++|.+|+|||++|+ +. .+++|||+++++|+.++.+++
T Consensus 238 ~------------~~l~~e~~rg~g~~lvn~~G~RF~~~y~~~~~~~~~~p~~~~~~l~~rd~v~~ai~~e~~~g~~~~~ 305 (580)
T TIGR01176 238 T------------GILMTEGCRGEGGILVNKDGYRYLQDYGMGPETPVGEPKNKYMELGPRDKVSQAFWHEHNKGNTIDT 305 (580)
T ss_pred C------------ceEEeecccCCceEEECCCCCCcccccccccccccccccchhhhcchhHHHHHHHHHHHHhcCCCCC
Confidence 1 4678899999999999999999999985 32 589999999999999988754
Q ss_pred --CCeEEEecCCCChhHHHhhChhHHHHHHH-cCCCCCCCCeeeeeeeceecCceEECCCCCcccCceeecccccCCCCC
Q 006387 388 --EKYVLLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLH 464 (647)
Q Consensus 388 --~~~v~ld~~~~~~~~l~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~a~~g~~ 464 (647)
+..||+|+++++.+.+.++||.+.+++.+ .|+|+.+++++|.|++||++|||+||.+++|+|||||||||++|+|+|
T Consensus 306 ~~g~~v~ld~~~~~~~~~~~~~~~~~~~~~~~~gid~~~~~i~v~p~~h~~~GGi~~d~~~~t~i~GLyAaGe~a~~G~h 385 (580)
T TIGR01176 306 PYGDVVYLDLRHLGEDLLDERLPFICELAKAYVHVDPVKEPIPVRPTVHYTMGGIETDINCETRIKGLFAVGECASVGLH 385 (580)
T ss_pred CCCCEEEEEcCCCCHHHHHHHhhHHHHHHHHHcCCCCCCCeEEEehHHhccCCCeeECcCcccccCCeEeeecccccCcC
Confidence 23699999999988899999999999888 599999999999999999999999999999999999999999888999
Q ss_pred CCCccchhhhHHHHHHHHHHHHHHHHhhhcccccccccccccccccCcccccccchh-----hhhcHHHHHHHHHHHHHh
Q 006387 465 GANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHN-----ILRRTKEVRKELQSIMWR 539 (647)
Q Consensus 465 Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~m~~ 539 (647)
|+|||+||||++|+|||++||++|++++.......... ... .... ...++.. ....+.+++++||++||+
T Consensus 386 Ganrl~g~sl~~~~v~G~~ag~~aa~~~~~~~~~~~~~--~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~ 460 (580)
T TIGR01176 386 GANRLGSNSLAELVVFGRRAGEAAAERAARHQKSNESA--IRA-QART--VELRLERLLSQHGGENWADIRAEMGATMES 460 (580)
T ss_pred CCccccchhHHHHHHHHHHHHHHHHHhhccccccCccc--hhh-hHHH--HHHHHHHHhhccCcccHHHHHHHHHHHHHh
Confidence 99999999999999999999999999874421100000 000 0000 0000000 012467789999999999
Q ss_pred cCccccCHHHHHHHHHHHHHHHHHHHHhhhcc-CcccccchHHHHHHHhHHHHHHHHHHHHHhcCcCcccccccCC--CC
Q 006387 540 YVGIVRSTTSLQTAEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDF--PH 616 (647)
Q Consensus 540 ~~g~~r~~~~l~~al~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~--P~ 616 (647)
|+|++|++++|+++|.+|++|++++..+.... ....++++++++|++|||++|+++++|||+|+||||+|||.|| |+
T Consensus 461 ~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~~~P~ 540 (580)
T TIGR01176 461 GCGIYRDGPLMQKTIDKLAELQERFKRAGIDDHSRVFNTDLLYLIELGGGLDVAEAMVHSALRRKESRGAHQRLDEGCTE 540 (580)
T ss_pred cccEEECHHHHHHHHHHHHHHHHHHHHhccCccccccchhHHHHHHHHhHHHHHHHHHHHHHhcccccccccccccCCcc
Confidence 99999999999999999999998877643222 2223578899999999999999999999999999999999999 99
Q ss_pred CccCCCCCeeec
Q 006387 617 VEENKRLPTIIL 628 (647)
Q Consensus 617 ~d~~~~~~~~~~ 628 (647)
+||++|.++++.
T Consensus 541 ~~d~~~~~~~~~ 552 (580)
T TIGR01176 541 RDDVHFLKHTLA 552 (580)
T ss_pred cCchhhcceEEE
Confidence 988777777654
No 5
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=100.00 E-value=5.5e-93 Score=795.24 Aligned_cols=522 Identities=35% Similarity=0.538 Sum_probs=450.1
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecC--CCCCHHHHHHHHHHhcccCCCHHH
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC--PSDSVESHMQDTIVAGAYLCDDET 162 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~--~~d~~~~~~~~~~~~g~~~~~~~~ 162 (647)
..++||||||+|+|||+||+.|++.| +|+||||....+|+|.+++||+++... +.|+++.|++|+++.+.+++|+++
T Consensus 48 ~~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~l 127 (635)
T PLN00128 48 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDA 127 (635)
T ss_pred eeecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHH
Confidence 45799999999999999999999999 999999999989999999999987765 578999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCcc--------ccceeeccCCchHHHHHHHHHHHHcCCCcEEEc
Q 006387 163 VRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHS--------HHRIVHAADMTGREIERALLEAVVSDPNISVFE 234 (647)
Q Consensus 163 ~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~--------~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~ 234 (647)
++.+++++++.++||.++|++|+++.+|.+....+++|+ .+|+++..+.+|..++..|.+.+.+ .||++++
T Consensus 128 v~~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~-~gv~i~~ 206 (635)
T PLN00128 128 IQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMK-HNTQFFV 206 (635)
T ss_pred HHHHHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHh-CCCEEEE
Confidence 999999999999999999999999888877777778776 4588888889999999999999887 4999999
Q ss_pred ceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchHHHHHHHcCCeecCcccc
Q 006387 235 HHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFV 314 (647)
Q Consensus 235 ~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~ 314 (647)
++.+++|+.++++ +|.||.+.+..+|+.+.|.||+|||||||++++|..++++..+||||++||+++||.+.||||+
T Consensus 207 ~~~~~~Li~~~~g---~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~~~~tt~~~~~tGDG~~mA~~aGA~l~~mefv 283 (635)
T PLN00128 207 EYFALDLIMDSDG---ACQGVIALNMEDGTLHRFRAHSTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLQDLEFV 283 (635)
T ss_pred eeEEEEEEEcCCC---EEEEEEEEEcCCCeEEEEEcCeEEECCCCCccccccccCCCCCCCHHHHHHHHcCCCCcCCcce
Confidence 9999999987456 8999999887789888999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCCCCCCCCccceeeecccCCCceEEeCCCCccccccccc-cccCchhHHHHHHHHHHHhcC-----C
Q 006387 315 QFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVARSIDDQLKKRN-----E 388 (647)
Q Consensus 315 q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~-~~l~~rd~~~~~i~~~~~~~~-----~ 388 (647)
||||+.+... .++++++++++|++++|.+|+|||++|++. .++.+||+++++|..++.+++ .
T Consensus 284 qfhPt~~~~~------------~~l~~ea~rg~g~~lvN~~GeRF~~~y~~~~~el~~rd~v~~ai~~e~~~~~g~~~~~ 351 (635)
T PLN00128 284 QFHPTGIYGA------------GCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPEK 351 (635)
T ss_pred EEecccccCC------------CeEEeeeccCCCcEEECCCCCCcccccCcccccccchhHHHHHHHHHHHhcCCCCCCC
Confidence 9999877431 467889999999999999999999999876 589999999999999987643 2
Q ss_pred CeEEEecCCCChhHHHhhChhHHHHHHH-cCCCCCCCCeeeeeeeceecCceEECCCCC----------cccCceeeccc
Q 006387 389 KYVLLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGE----------TNVRGLYVAGE 457 (647)
Q Consensus 389 ~~v~ld~~~~~~~~l~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~----------T~ipGLyAaGe 457 (647)
..+|+|+++++++.+.+++|.+.+.+.. .|+|+.++|++|.|++||+||||.||.++| |+|||||||||
T Consensus 352 ~~v~ld~~~l~~e~l~~~~~~~~~~~~~~~G~D~~~~pi~v~P~~hyt~GGi~vd~~g~vl~~~g~~~~t~IpGLYAaGE 431 (635)
T PLN00128 352 DHIYLHLNHLPPEVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVVTIKGDDPDAVVPGLMAAGE 431 (635)
T ss_pred CEEEEEcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCceEeeccceEecCCcccCCCCeEecccCcccCCccCceEeeec
Confidence 3599999999999999999998888776 799999999999999999999999999888 58999999999
Q ss_pred ccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhcccccccccccccccccCccc-ccccch--hhhhcHHHHHHHHH
Q 006387 458 VACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSL-GCNVMH--NILRRTKEVRKELQ 534 (647)
Q Consensus 458 ~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~l~ 534 (647)
|+|+|+||+|||+||+|++|+|||++||++|+++++..... .... ... .+... ....+. .....+.+++++||
T Consensus 432 ~a~~g~hGanRlggnsL~~a~vfGr~Ag~~aa~~~~~~~~~-~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Lq 507 (635)
T PLN00128 432 AACASVHGANRLGANSLLDIVVFGRACANRVAEIAKPGEKQ-KPLP--KDA-GEKTIAWLDKLRNANGSLPTSKIRLNMQ 507 (635)
T ss_pred cccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhhcccccc-cccc--hhh-HHHHHHHHHHhhcccCCCChHHHHHHHH
Confidence 99889999999999999999999999999999876432100 0000 000 00000 000000 01134778899999
Q ss_pred HHHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhhcc-CcccccchHHHHHHHhHHHHHHHHHHHHHhcCcCcccccccC
Q 006387 535 SIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVD 613 (647)
Q Consensus 535 ~~m~~~~g~~r~~~~l~~al~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D 613 (647)
++||+++||+|++++|++++++|++|++++..+...+ ....++++++++|++||+++|+++++|||+|+||||+|||+|
T Consensus 508 ~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~n~l~~a~~~~~aal~R~ESRG~H~R~D 587 (635)
T PLN00128 508 RVMQNNAAVFRTQETLEEGCKLIDEAWDSFHDVKVTDRSLIWNSDLIETLELENLLINACITMHSAEARKESRGAHARED 587 (635)
T ss_pred HHHhCceeEEECHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhCcCcccccccCC
Confidence 9999999999999999999999999998876542211 112346778999999999999999999999999999999999
Q ss_pred CCCCccCCCCCeee
Q 006387 614 FPHVEENKRLPTII 627 (647)
Q Consensus 614 ~P~~d~~~~~~~~~ 627 (647)
||++||++|+++++
T Consensus 588 ~P~~~d~~w~~~~~ 601 (635)
T PLN00128 588 FTKRDDENWMKHTL 601 (635)
T ss_pred CCCCCccccccEEE
Confidence 99999988888775
No 6
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=6.1e-93 Score=790.88 Aligned_cols=523 Identities=35% Similarity=0.558 Sum_probs=451.9
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeec----CCCCCHHHHHHHHHHhcccCCCH
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL----CPSDSVESHMQDTIVAGAYLCDD 160 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~----~~~d~~~~~~~~~~~~g~~~~~~ 160 (647)
..++||||||+|.|||+||+.|++.| +|+||||....+|+|.+++||+++.. ++.|+++.|++|+++.+.+++|+
T Consensus 3 ~~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~ 82 (566)
T PRK06452 3 KIEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQ 82 (566)
T ss_pred cccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCH
Confidence 35799999999999999999999999 99999999888899999999998643 35799999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEE
Q 006387 161 ETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAID 240 (647)
Q Consensus 161 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~ 240 (647)
++++.+++++++.++||.++|++|.+.++|.+....+++|+++|+++..+.+|..++..|.+.+.+ .||++++++.+++
T Consensus 83 ~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~-~gv~i~~~~~~~~ 161 (566)
T PRK06452 83 DAAELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSG-LNVDFYNEWFSLD 161 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHh-CCCEEEeCcEEEE
Confidence 999999999999999999999999988888877778899999999998888999999999998887 4999999999999
Q ss_pred EEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchHHHHHHHcCCeecCcccccccccc
Q 006387 241 LLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTA 320 (647)
Q Consensus 241 l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~ 320 (647)
|+.+ +| +|+||.+.+..+++...|+||+|||||||++.+|+.+++++.+||||+.||+++||.+.+|||+||||+.
T Consensus 162 Li~~-~g---~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~l~~~~~~~~~~tGDGi~mA~~aGA~l~~me~~q~~pt~ 237 (566)
T PRK06452 162 LVTD-NK---KVVGIVAMQMKTLTPFFFKTKAVVLATGGMGMLYRHTTNSYINTGDGFGIALRAGAALKDPEFVQFHPTA 237 (566)
T ss_pred EEEE-CC---EEEEEEEEECCCCeEEEEEeCeEEECCCccccccCCCCCCCCcChHHHHHHHHcCCcccCCcceEEeeeE
Confidence 9986 56 8999999887778888999999999999999999999999999999999999999999999999999987
Q ss_pred ccCCCCCCCCCCCCCccceeeecccCCCceEEeCCCCccccccccc-cccCchhHHHHHHHHHHHhcCC---CeEEEecC
Q 006387 321 LADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVARSIDDQLKKRNE---KYVLLDIS 396 (647)
Q Consensus 321 ~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~-~~l~~rd~~~~~i~~~~~~~~~---~~v~ld~~ 396 (647)
+... .++++++++++|++++|.+|+|||++|++. .++++||++++++..++.++++ .++|+|.+
T Consensus 238 ~~~~------------~~l~~e~~rg~g~ilvN~~G~RF~~e~~~~~~~l~~rd~v~~ai~~e~~~g~g~~~~~v~lD~~ 305 (566)
T PRK06452 238 LYPS------------DVLISEAARGEGGILKNVKGERFMTKYAPKKLDLAPRDIVSRAIITEIREGRGFPGGYVGLDLT 305 (566)
T ss_pred ECCC------------CeEEEEeeecCCCEEECCCCCCCccccCccccccCCccHHHHHHHHHHHhCCCCCCCeEEEEcc
Confidence 6421 357888999999999999999999999876 6899999999999999976542 47999999
Q ss_pred CCChhHHHhhChhHHHHHHH-cCCCCCCCCeeeeeeeceecCceEECCCCCcc-cCceeecccccCCCCCCCCccchhhh
Q 006387 397 HKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGETN-VRGLYVAGEVACTGLHGANRLASNSL 474 (647)
Q Consensus 397 ~~~~~~l~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~-ipGLyAaGe~a~~g~~Ga~rl~g~sl 474 (647)
+.+.+.+.++||.+.+.+.+ .|+|+.+++++|.|++||+||||+||.+++|+ ||||||||||+|+|+||+|||+||||
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~h~~~GGi~vd~~~~t~~IpGLyAaGE~a~~g~hGanrlggnsl 385 (566)
T PRK06452 306 HLGEEYIKERLALAVEAAKSFAGVDAFTEPIPVRPAQHYYMGGIDVDIDGRNPDIVGLFSAGEAACVSVHGANRLGSNSL 385 (566)
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCCCCCCeeeecccCEecCCeEECCCCCcCCcCCeEecccccccCCCCcccccchHH
Confidence 99888888999998888888 69999999999999999999999999999996 99999999999779999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccccccccccccCcccc-c-ccch-hhhhcHHHHHHHHHHHHHhcCccccCHHHHH
Q 006387 475 LEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLG-C-NVMH-NILRRTKEVRKELQSIMWRYVGIVRSTTSLQ 551 (647)
Q Consensus 475 ~~a~v~G~~Ag~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~-~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~ 551 (647)
++|+|||++||++|+++++....... .. .... .+.... . .... .....+.+++++||++||+|+||+|++++|+
T Consensus 386 ~~~~v~G~~Ag~~aa~~~~~~~~~~~-~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~ 462 (566)
T PRK06452 386 LDTLVFGQVTGRTVVQFLKSNPGNPT-SN-YEKE-AEKVVDDAYKFVKSESGVHFGQILEKLRDTMWDYVGIYRDEGGLL 462 (566)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCc-cc-hhhh-HHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhhccccHHHHH
Confidence 99999999999999998753211000 00 0000 000000 0 0000 0112467888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccC-cccccchHHHHHHHhHHHHHHHHHHHHHhcCcCcccccccCCCCCccCCCCCeeec
Q 006387 552 TAEWRIDELEAEWETYLFEHG-WEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTIIL 628 (647)
Q Consensus 552 ~al~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~~~~~~ 628 (647)
+||++|++|++++.++...+. ...++++++++|++||+++|+++++|||+|+||||+|||+|||++||++|+++++.
T Consensus 463 ~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~d~~~~~~~~~ 540 (566)
T PRK06452 463 NAMSEINKLRGMISNMYVTDKSKVYNTEFFNALELRNMLDLALVIAKSALERKESRGAHYRTDYPDRDDNNWLKHTIA 540 (566)
T ss_pred HHHHHHHHHHHHHHhhccCCcccccChhhHHHHHHHhHHHHHHHHHHHHHhCCCCcceeccCCCCCCCchhhccEEEE
Confidence 999999999988776432211 11356788999999999999999999999999999999999999998878777763
No 7
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=100.00 E-value=2.5e-92 Score=793.90 Aligned_cols=521 Identities=32% Similarity=0.482 Sum_probs=449.6
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecC-----CCCCHHHHHHHHHHhcccCCC
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC-----PSDSVESHMQDTIVAGAYLCD 159 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~-----~~d~~~~~~~~~~~~g~~~~~ 159 (647)
..++||||||||.|||+||+.|++.| +|+||||....+|+|.+++||+.+..+ ..|+++.|+.|+++.+.+.||
T Consensus 3 ~~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s~s~~a~GGi~a~~g~~~~g~~Ds~e~~~~Dt~k~~~~~~D 82 (657)
T PRK08626 3 IIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRSHSAAAQGGMQASLGNAVKGEGDNEDVHFADTVKGSDWGCD 82 (657)
T ss_pred ceeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCcchHHHhhhHHhhccccccCCCCCHHHHHHHHHHhcCCCCC
Confidence 45799999999999999999999999 999999999988899999999876543 578999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHcCCCcccCCCCC---------------------ccccccCCccccceeeccCCchHHHHH
Q 006387 160 DETVRVVCTEGPDRIRELIAIGASFDRGEDGN---------------------LHLAREGGHSHHRIVHAADMTGREIER 218 (647)
Q Consensus 160 ~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~---------------------~~~~~~gg~~~~r~~~~~~~~g~~~~~ 218 (647)
+++++.+++++++.++||.++|++|.+..+|. +....+++++.+|+++..+.+|..+..
T Consensus 83 ~~~vr~~v~~sp~~i~~L~~~Gv~f~r~~~g~~~~~~~g~~~~~~~~~~~~~~i~~r~~GG~~~~R~~~~~d~tG~~l~~ 162 (657)
T PRK08626 83 QEVARMFVHTAPKAVRELAAWGVPWTRVTAGPRTVVINGEKVTITEKEEAHGLINARDFGGTKKWRTCYTADGTGHTMLY 162 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCeecCCCcccccccccccccccccccccccccccccccccceeEecCCCcHHHHHH
Confidence 99999999999999999999999998765442 223356888999999998889999999
Q ss_pred HHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchHH
Q 006387 219 ALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGM 298 (647)
Q Consensus 219 ~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~tGdg~ 298 (647)
.|.+.+.+ .||+|++++.+++|+.+ ++ +|.||++.+..+|+.+.|.||+|||||||++++|..++++..+||||+
T Consensus 163 ~L~~~~~~-~gv~i~~~~~~~~Li~~-~g---~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~~y~~ttn~~~~tGdG~ 237 (657)
T PRK08626 163 AVDNEAIK-LGVPVHDRKEAIALIHD-GK---RCYGAVVRCLITGELRAYVAKATLIATGGYGRIYKVTTNAVICEGIGA 237 (657)
T ss_pred HHHHHHHh-CCCEEEeeEEEEEEEEE-CC---EEEEEEEEEcCCCcEEEEEcCeEEECCCcccCCCCCCCCCCCcChHHH
Confidence 99988887 59999999999999986 56 899999988778988899999999999999999999999999999999
Q ss_pred HHHHHcCC-eecCccccccccccccCCCCCCCCCCCCCccceeeecccCCCceEEeCCCCccccccccc-cccCchhHHH
Q 006387 299 AMAHRAQA-VISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVA 376 (647)
Q Consensus 299 ~~a~~aGa-~l~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~-~~l~~rd~~~ 376 (647)
+||+++|+ .+.||||+||||+.+... .+++++++|++|++++|.+|+|||++|++. .|+++||+++
T Consensus 238 ~mA~~aGaa~l~~mE~vqfhPt~~~~~------------g~l~~e~~rg~G~ilvn~~G~RF~~~y~p~~~Ela~rd~vs 305 (657)
T PRK08626 238 AIALETGVAPLGNMEAVQFHPTAIVPS------------GILVTEGCRGDGGLLRDKDGYRFMPDYEPEKKELASRDVVS 305 (657)
T ss_pred HHHHHcCCccccCccceEEeccEECCC------------CeEEEeeccCCCEEEECCCCCCCCcccCcccccccchhHHH
Confidence 99999996 799999999999877531 467899999999999999999999999874 6899999999
Q ss_pred HHHHHHHHhcCC------CeEEEecCCCChhHHHhhChhHHHHHHH-cCCCCCCCCeeeeeeeceecCceEECCCCCc-c
Q 006387 377 RSIDDQLKKRNE------KYVLLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGET-N 448 (647)
Q Consensus 377 ~~i~~~~~~~~~------~~v~ld~~~~~~~~l~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T-~ 448 (647)
++|..++.++.+ ..||+|+++.+.+.+.+++|++.+++.. .|+||.+++++|.|..||+||||+||.+++| +
T Consensus 306 rai~~~~~~g~g~~~~~~~~v~lD~~~~~~~~i~~~~~~i~e~~~~~~giD~~~~~i~v~P~~hytmGGi~vd~~~~t~~ 385 (657)
T PRK08626 306 RRMTEHIRKGKGVKSPYGPHLWLDIRILGRKHIETNLREVQEICENFLGIDPAKDWIPVRPTQHYSMGGIRTNPTGESYG 385 (657)
T ss_pred HHHHHHHHhcCCCCCCCCCEEEEECCCCCHHHHHHHHhHHHHHHHHHcCCCCcCceEEEEecccEecCCceECCCCCCcc
Confidence 999999987532 3599999999888888899999999987 6999999999999999999999999999999 6
Q ss_pred cCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhcccccccccccccccccCcccccccch-----hhh
Q 006387 449 VRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMH-----NIL 523 (647)
Q Consensus 449 ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 523 (647)
||||||||||+|+|+||+|||+||||++|+|||++||++|+++++....+..... ....... ....+. +..
T Consensus 386 I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~iAg~~aa~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~ 461 (657)
T PRK08626 386 LKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVADFCLGNELEIDTAL--VEKFVKK--QQDRIDELIAGEGK 461 (657)
T ss_pred cCCEEecccccccCCCCCCccchHHHHHHHHHHHHHHHHHHHHhhccCCccccch--hhhHHHH--HHHHHHHHhhcCCC
Confidence 9999999999988999999999999999999999999999998754311100000 0000000 000000 011
Q ss_pred hcHHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhhcc-CcccccchHHHHHHHhHHHHHHHHHHHHHhc
Q 006387 524 RRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALAR 602 (647)
Q Consensus 524 ~~~~~~~~~l~~~m~~~~g~~r~~~~l~~al~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R 602 (647)
.++.+++++||++||+++||+|++++|++|+++|++|++++..+.... ....++++++++|++|||++|+++++|||+|
T Consensus 462 ~~~~~i~~~lq~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~n~~~~~a~e~~~~l~~a~~i~~aAl~R 541 (657)
T PRK08626 462 ENVFEIKNEMQEIMMEKVGIFRNGPELEKAVKELQELLERSKNIGLKSKKRGANPELEEALRVPRMLKLALCVAYGALAR 541 (657)
T ss_pred CCHHHHHHHHHHHHhcccCEEecHHHHHHHHHHHHHHHHHHHHhcccCcccccCHHHHHHHHHHhHHHHHHHHHHHHHhC
Confidence 356789999999999999999999999999999999998887643222 1124678899999999999999999999999
Q ss_pred CcCcccccccCCCCCccCCCCCeee
Q 006387 603 HESRGLHYMVDFPHVEENKRLPTII 627 (647)
Q Consensus 603 ~ESRG~h~R~D~P~~d~~~~~~~~~ 627 (647)
+||||+|||+|||++||++|+++++
T Consensus 542 ~ESRG~H~R~DyP~~~d~~~~~~~~ 566 (657)
T PRK08626 542 TESRGAHAREDYPKRNDRDWLNRTL 566 (657)
T ss_pred CCCccceecCcCcccCchhhceEEE
Confidence 9999999999999999988888775
No 8
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=4.9e-92 Score=785.14 Aligned_cols=523 Identities=35% Similarity=0.531 Sum_probs=448.1
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecC--CCCCHHHHHHHHHHhcccCCCHHH
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC--PSDSVESHMQDTIVAGAYLCDDET 162 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~--~~d~~~~~~~~~~~~g~~~~~~~~ 162 (647)
..++||||||+|.|||+||+.|++.| +|+||||....+|+|.+++||+++..+ +.|+++.|++|+++.+.+++|+++
T Consensus 5 ~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~ 84 (588)
T PRK08958 5 VREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDA 84 (588)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHH
Confidence 34799999999999999999999999 999999998888999999999987654 679999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCcc-------ccceeeccCCchHHHHHHHHHHHHcCCCcEEEcc
Q 006387 163 VRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHS-------HHRIVHAADMTGREIERALLEAVVSDPNISVFEH 235 (647)
Q Consensus 163 ~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~-------~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~ 235 (647)
++.+++++++.++||+++|++|++.++|.+....+++|+ .+|++|..+.+|..++..|.+++.+ .||+++++
T Consensus 85 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~-~gi~i~~~ 163 (588)
T PRK08958 85 IEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLK-NHTTIFSE 163 (588)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhh-cCCEEEeC
Confidence 999999999999999999999998888877666667774 4799999898999999999998886 59999999
Q ss_pred eEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchHHHHHHHcCCeecCccccc
Q 006387 236 HFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQ 315 (647)
Q Consensus 236 ~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q 315 (647)
+.+++|+.+++| +|+||.+.+..+|+.+.|+||+|||||||++++|..+++++.+||||+.||+++||.+.||||+|
T Consensus 164 ~~~~~Li~~~~g---~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me~~q 240 (588)
T PRK08958 164 WYALDLVKNQDG---AVVGCTAICIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMALRAGVPVQDMEMWQ 240 (588)
T ss_pred cEEEEEEECCCC---EEEEEEEEEcCCCcEEEEEcCeEEECCCCcccccccccCCCCCCcHHHHHHHHcCCcCcCCcceE
Confidence 999999986566 89999998877888889999999999999999999899999999999999999999999999999
Q ss_pred cccccccCCCCCCCCCCCCCccceeeecccCCCceEEeCCCCccccccccc-cccCchhHHHHHHHHHHHhcCC------
Q 006387 316 FHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVARSIDDQLKKRNE------ 388 (647)
Q Consensus 316 ~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~-~~l~~rd~~~~~i~~~~~~~~~------ 388 (647)
|||+.+... .+++++.++++|++++|.+|+|||++|++. .++.+||++++++..++..+.+
T Consensus 241 ~~Pt~~~~~------------~~l~~e~~rg~g~ilvN~~GeRF~~~y~~~~~el~~rd~v~~ai~~e~~~~~g~~~~~~ 308 (588)
T PRK08958 241 FHPTGIAGA------------GVLVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCDGPWG 308 (588)
T ss_pred eecCcccCC------------ceEEeeccccCceEEECCCCCChhhhhCccccccCChhHHHHHHHHHHHhcCCCcCCCC
Confidence 999876421 467888999999999999999999999886 5899999999999998865432
Q ss_pred CeEEEecCCCChhHHHhhChhHHHHHHH-cCCCCCCCCeeeeeeeceecCceEECCCCC----------cccCceeeccc
Q 006387 389 KYVLLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGE----------TNVRGLYVAGE 457 (647)
Q Consensus 389 ~~v~ld~~~~~~~~l~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~----------T~ipGLyAaGe 457 (647)
..+|+|+++++.+.+.+++|.+.+.++. .++|+.++|++|.|++||+||||.||.+++ |+|||||||||
T Consensus 309 ~~v~ld~~~l~~~~l~~~~~~~~~~~~~~~~~d~~~~~i~v~p~~h~t~GGi~vd~~g~v~~~d~~~~~t~IpGLYAaGE 388 (588)
T PRK08958 309 PHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGE 388 (588)
T ss_pred CeEEEEcccCCHHHHHHHcccHHHHHHHhcCCCcCCCcceeehhhcEeCCCeeECCCceeeccccccCCCccCCeEeccc
Confidence 2489999999888888999998888877 489999999999999999999999999988 57999999999
Q ss_pred ccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhcccc--ccccccc-ccccccCcccccccchhhhhcHHHHHHHHH
Q 006387 458 VACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSI--DLSASNW-WTRTVVPKSLGCNVMHNILRRTKEVRKELQ 534 (647)
Q Consensus 458 ~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 534 (647)
++|+|+||+||++||||++|+|||++||++|+++++.... ++..... .....+.. ... ......+.+++++||
T Consensus 389 ~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~l~ 464 (588)
T PRK08958 389 IACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESLAEQGALRDASESDIEASLARLNR-WNN---NRNGEDPVQIRKALQ 464 (588)
T ss_pred ccccCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhccCCcccCCHHHHHHHHHHHhh-hcc---cCCCCCHHHHHHHHH
Confidence 9977999999999999999999999999999998743210 0100000 00000000 000 001134677899999
Q ss_pred HHHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhhccC-cccccchHHHHHHHhHHHHHHHHHHHHHhcCcCcccccccC
Q 006387 535 SIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHG-WEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVD 613 (647)
Q Consensus 535 ~~m~~~~g~~r~~~~l~~al~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D 613 (647)
++||+|+||+|++++|++||++|++|++++..+...+. ...+.++++++|++|||++|+++++|||+|+||||+|||+|
T Consensus 465 ~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~i~~aal~R~ESRG~H~R~D 544 (588)
T PRK08958 465 ECMQNNFSVFREGDAMAKGLEELKVIRERLKNARLDDTSSEFNTQRIECLELDNLMETAYATAVSANFRTESRGAHSRFD 544 (588)
T ss_pred HHHhCCEEEEECHHHHHHHHHHHHHHHHHHHhcccCccccccchhhHHHHHHHhHHHHHHHHHHHHHhCCCCcccccCCC
Confidence 99999999999999999999999999988776432211 12234678899999999999999999999999999999999
Q ss_pred CCCCccCCCCCeeec
Q 006387 614 FPHVEENKRLPTIIL 628 (647)
Q Consensus 614 ~P~~d~~~~~~~~~~ 628 (647)
||++||++|++++++
T Consensus 545 ~P~~~d~~~~~~~~~ 559 (588)
T PRK08958 545 FPDRDDENWLCHSLY 559 (588)
T ss_pred CCCCCchhhceEEEE
Confidence 999999878777654
No 9
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=100.00 E-value=1.1e-91 Score=785.50 Aligned_cols=522 Identities=34% Similarity=0.521 Sum_probs=449.7
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecC--CCCCHHHHHHHHHHhcccCCCHHH
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC--PSDSVESHMQDTIVAGAYLCDDET 162 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~--~~d~~~~~~~~~~~~g~~~~~~~~ 162 (647)
..++||||||||.|||+||+.|++.| +|+||||....+|+|.+++||+++... +.|+++.|+.|+++.+.+++|+++
T Consensus 27 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~l 106 (617)
T PTZ00139 27 DHTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDA 106 (617)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHH
Confidence 45799999999999999999999999 999999999989999999999987654 579999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCcc--------ccceeeccCCchHHHHHHHHHHHHcCCCcEEEc
Q 006387 163 VRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHS--------HHRIVHAADMTGREIERALLEAVVSDPNISVFE 234 (647)
Q Consensus 163 ~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~--------~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~ 234 (647)
++.+++++++.++||.++|++|++..+|.+....+++|+ .+|+++..+.+|..++..|.+.+.+ .||++++
T Consensus 107 v~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~-~gv~i~~ 185 (617)
T PTZ00139 107 IQYMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLK-YDCNFFI 185 (617)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHh-CCCEEEe
Confidence 999999999999999999999998888876655667664 4788888899999999999999987 5999999
Q ss_pred ceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchHHHHHHHcCCeecCcccc
Q 006387 235 HHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFV 314 (647)
Q Consensus 235 ~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~ 314 (647)
++.+++|+.+++| +|+||.+.+..+|+.+.|+||+|||||||++++|..++++..+||||+.||+++||.+.||||+
T Consensus 186 ~~~~~~Li~~~~g---~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~~~~t~~~~~tGdG~~mA~~aGA~l~~mef~ 262 (617)
T PTZ00139 186 EYFALDLIMDEDG---ECRGVIAMSMEDGSIHRFRAHYTVIATGGYGRAYFSCTSAHTCTGDGGAMVSRAGLPLQDLEFV 262 (617)
T ss_pred ceEEEEEEECCCC---EEEEEEEEECCCCeEEEEECCcEEEeCCCCccccCCcCCCCCcccHHHHHHHHcCCCccCCceE
Confidence 9999999985466 8999999887789988999999999999999999989999999999999999999999999999
Q ss_pred ccccccccCCCCCCCCCCCCCccceeeecccCCCceEEeCCCCccccccccc-cccCchhHHHHHHHHHHHhcCC-----
Q 006387 315 QFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVARSIDDQLKKRNE----- 388 (647)
Q Consensus 315 q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~-~~l~~rd~~~~~i~~~~~~~~~----- 388 (647)
||||+.+... .++++++++++|++++|.+|+|||++|++. .++.+||++++++..++.++.+
T Consensus 263 q~~pt~~~~~------------~~l~~e~~rg~g~~lvN~~GeRF~~~y~~~~~el~~rd~v~~ai~~e~~~g~g~~~~~ 330 (617)
T PTZ00139 263 QFHPTGIYGA------------GCLITEGCRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRAMTIEILEGRGCGPNK 330 (617)
T ss_pred EeccccccCC------------CcEEEeeccCCCcEEECCCCCCcccccCccccccccchHHHHHHHHHHHhcCCCCCCC
Confidence 9999876431 457888999999999999999999999887 5899999999999999876432
Q ss_pred CeEEEecCCCChhHHHhhChhHHHHHHH-cCCCCCCCCeeeeeeeceecCceEECCCCCc----------ccCceeeccc
Q 006387 389 KYVLLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGET----------NVRGLYVAGE 457 (647)
Q Consensus 389 ~~v~ld~~~~~~~~l~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T----------~ipGLyAaGe 457 (647)
.++|+|.++++++.+.+++|.+.+.+.. .|+|+.+++++|.|.+||++|||.||.++|| +|||||||||
T Consensus 331 ~~v~lD~~~~~~~~l~~~~~~~~~~~~~~~G~D~~~~~i~v~p~~h~t~GGi~vd~~~~v~d~~~~~~~t~I~GLyAaGE 410 (617)
T PTZ00139 331 DHIYLDLTHLPPETLHERLPGISETAKIFAGVDVTKEPIPVLPTVHYNMGGIPTNWKTQVLTQRNGDDDKIVPGLLAAGE 410 (617)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEecccceecCCeEEcCCceeeccccccCCCccCCceeccc
Confidence 4699999999999999999998888776 6999999999999999999999999999886 7999999999
Q ss_pred ccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhcccccccccccccccccCcccc-cccch--hhhhcHHHHHHHHH
Q 006387 458 VACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLG-CNVMH--NILRRTKEVRKELQ 534 (647)
Q Consensus 458 ~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~l~ 534 (647)
++|+|+||+|||+||+|++|+|||++||++|+++++....... . ... ..+.... ...+. +....+.+++++||
T Consensus 411 ~a~~g~hGanrlggnsl~~~~vfGr~Ag~~aa~~~~~~~~~~~-~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lq 486 (617)
T PTZ00139 411 AACASVHGANRLGANSLLDIVVFGRAAANTVMEILKPGRPQPD-L--PKD-AGEASIARLDKIRHNKGDISTAQIRKRMQ 486 (617)
T ss_pred ccccCcCCCcccchhhHHHHHHHHHHHHHHHHHhhcccCCCcc-c--chh-hhHHHHHHHHHHhcccCCcChHHHHHHHH
Confidence 9988999999999999999999999999999988643210000 0 000 0000000 00000 01134778899999
Q ss_pred HHHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhhcc-CcccccchHHHHHHHhHHHHHHHHHHHHHhcCcCcccccccC
Q 006387 535 SIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVD 613 (647)
Q Consensus 535 ~~m~~~~g~~r~~~~l~~al~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D 613 (647)
++||+|+||+|++++|++|+++|++|++++..+...+ ....++++++++|++|||++|+++++|||+|+||||+|||+|
T Consensus 487 ~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D 566 (617)
T PTZ00139 487 RTMQKHAAVFRIGESLQEGVEKIKEIYSDFKDVKIKDKSLVWNTDLIETLELENLLTQAKQTILSAEARKESRGAHARDD 566 (617)
T ss_pred HHHhhhceeEECHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHhHHHHHHHHHHHHHhccCcchhhccCc
Confidence 9999999999999999999999999998876542211 122457889999999999999999999999999999999999
Q ss_pred CCCCccCCCCCeee
Q 006387 614 FPHVEENKRLPTII 627 (647)
Q Consensus 614 ~P~~d~~~~~~~~~ 627 (647)
||++||++|+++++
T Consensus 567 ~P~~~d~~~~~~~~ 580 (617)
T PTZ00139 567 FPERDDKNWMKHTL 580 (617)
T ss_pred CCcCCchhhceEEE
Confidence 99999877777765
No 10
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=100.00 E-value=1.1e-91 Score=782.32 Aligned_cols=522 Identities=32% Similarity=0.488 Sum_probs=453.6
Q ss_pred ccccCEEEECcchHHHHHHHHHHhc--C-CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHH
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDET 162 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~--G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~ 162 (647)
+.++||||||+|+|||+||+.|++. | +|+||||....+|++.+++||+++...+.|+++.|++|+++.+.+++|+++
T Consensus 2 t~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~~d~~~ 81 (582)
T PRK09231 2 TFQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCEQDV 81 (582)
T ss_pred ceeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhhhcCCCCCHHHHHHHHHHhcccCCCHHH
Confidence 4579999999999999999999986 5 899999999989999999999988777889999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEE
Q 006387 163 VRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLL 242 (647)
Q Consensus 163 ~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~ 242 (647)
++.+++++++.++||+++|++|+++++|.+....+++|+.+|+++..+.+|..+...|.+.+.+.++|++++++.+++|+
T Consensus 82 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li 161 (582)
T PRK09231 82 VEYFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVLDIL 161 (582)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcEEEeCeEEEEEE
Confidence 99999999999999999999999988888877788999999999998889999999999988776689999999999999
Q ss_pred ecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchHHHHHHHcCCeecCcccccccccccc
Q 006387 243 TTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALA 322 (647)
Q Consensus 243 ~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~ 322 (647)
.+ ++ +|.||++.+..+|+...|+||.||+||||++.+|..++++..+||||+.||+++||.+.||||+||||+.+.
T Consensus 162 ~~-~g---~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l~~~~t~~~~~tGdG~~mA~~aGA~l~~me~~q~~Pt~~~ 237 (582)
T PRK09231 162 VD-DG---HVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMAYRHGVPLRDMEFVQYHPTGLP 237 (582)
T ss_pred Ee-CC---EEEEEEEEEcCCCcEEEEECCEEEECCCCCcCCCCCCCCCCCCccHHHHHHHHcCCCccCccceeeecceeC
Confidence 86 56 899999987778888889999999999999999988889999999999999999999999999999998774
Q ss_pred CCCCCCCCCCCCCccceeeecccCCCceEEeCCCCccccccc---------cc---cccCchhHHHHHHHHHHHhcC---
Q 006387 323 DEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYD---------ER---AELAPRDVVARSIDDQLKKRN--- 387 (647)
Q Consensus 323 ~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~---------~~---~~l~~rd~~~~~i~~~~~~~~--- 387 (647)
.. .++++++++++|++++|.+|+|||++|+ |. .|+++||+++++++.++..+.
T Consensus 238 ~~------------~~l~~e~~rg~g~~lvn~~G~RF~~~y~~~~~~~~~~p~~~~~el~~rd~v~~ai~~~~~~g~~~~ 305 (582)
T PRK09231 238 GS------------GILMTEGCRGEGGILVNKDGYRYLQDYGLGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTIS 305 (582)
T ss_pred CC------------CceeeecccCCCeEEECCCCCCchhccccccccccccccccccccccHHHHHHHHHHHHHhCCCcc
Confidence 21 4678889999999999999999999884 32 489999999999999987643
Q ss_pred ---CCeEEEecCCCChhHHHhhChhHHHHHHH-cCCCCCCCCeeeeeeeceecCceEECCCCCcccCceeecccccCCCC
Q 006387 388 ---EKYVLLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGL 463 (647)
Q Consensus 388 ---~~~v~ld~~~~~~~~l~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~a~~g~ 463 (647)
+..||+|+++++.+.+.+++|++.+++++ .|+|+.++++++.|..|+++|||+||.+++|+||||||||||+|+|+
T Consensus 306 ~~~g~~v~ld~~~~~~~~~~~~~~~i~e~~~~~~G~d~~~~~i~v~p~~h~t~GGi~vd~~~~t~i~GLyAaGe~~~~g~ 385 (582)
T PRK09231 306 TPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGL 385 (582)
T ss_pred CCCCCEEEEECCcCCHHHHHHHhhHHHHHHHHHcCCCCCCCeeeeeceeeeeCCCEEECCCCccccCCEEeccccccccc
Confidence 23699999999988888899999999988 59999999999999999999999999999999999999999987799
Q ss_pred CCCCccchhhhHHHHHHHHHHHHHHHHhhhcccccccccccccccccCcccccccch-----hhhhcHHHHHHHHHHHHH
Q 006387 464 HGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMH-----NILRRTKEVRKELQSIMW 538 (647)
Q Consensus 464 ~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~m~ 538 (647)
||+||++||+|++|+|||++||++|+++++....... ..... ..+. ...++. +....+.+++++||++||
T Consensus 386 hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~~~~~~~~--~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 460 (582)
T PRK09231 386 HGANRLGSNSLAELVVFGRVAGEQAAERAATAGPGNE--AALDA-QAAD--VEQRLKALVNQEGGENWAKIRDEMGLSME 460 (582)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCccc--cchhh-HHHH--HHHHHHHHhhccCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998754321000 00000 0000 000000 011357789999999999
Q ss_pred hcCccccCHHHHHHHHHHHHHHHHHHHHhhhc-cCcccccchHHHHHHHhHHHHHHHHHHHHHhcCcCcccccccC--CC
Q 006387 539 RYVGIVRSTTSLQTAEWRIDELEAEWETYLFE-HGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVD--FP 615 (647)
Q Consensus 539 ~~~g~~r~~~~l~~al~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D--~P 615 (647)
+|+||+|++++|+++|.+|++|++++..+... .....++++++++|++|||++|+++++|||+|+||||+|||.| ||
T Consensus 461 ~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~~~P 540 (582)
T PRK09231 461 EGCGIYRTPELMQKTIDKLAELKERFKRVRITDTSSVFNTDLLYTIELGYGLDVAECMAHSALARKESRGAHQRLDEGCT 540 (582)
T ss_pred hcCcEEECHHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcccccchhcccccCCC
Confidence 99999999999999999999999887653211 1222357889999999999999999999999999999999999 99
Q ss_pred CCccCCCCCeeec
Q 006387 616 HVEENKRLPTIIL 628 (647)
Q Consensus 616 ~~d~~~~~~~~~~ 628 (647)
++||++|.++++.
T Consensus 541 ~~~d~~~~~~~~~ 553 (582)
T PRK09231 541 ERDDVNFLKHTLA 553 (582)
T ss_pred ccChhhhceEEEE
Confidence 9988877777653
No 11
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=3.4e-91 Score=779.47 Aligned_cols=526 Identities=29% Similarity=0.416 Sum_probs=445.0
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecC---CCCCHHHHHHHHHHhcccCCCHHHH
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC---PSDSVESHMQDTIVAGAYLCDDETV 163 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~---~~d~~~~~~~~~~~~g~~~~~~~~~ 163 (647)
.+||||||+|+|||+||+.|++.| +|+||||....+|+|.+++||+++..+ +.|+++.|++|+++.+.+++|++++
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~v 82 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTVYGGDFLANQPPV 82 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCcccccCCCeEEecCcCCCCCCHHHHHHHHHHhcCCcCCHHHH
Confidence 479999999999999999999999 999999999988999999999987765 6799999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcC---CCcEEEcceEEEE
Q 006387 164 RVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSD---PNISVFEHHFAID 240 (647)
Q Consensus 164 ~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~---~gv~i~~~~~v~~ 240 (647)
+.+++++++.++||.++|++|++..+|.+....+++|+.+|+++..+.+|..++..|.+.+.+. .+|++++++.+++
T Consensus 83 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~ 162 (589)
T PRK08641 83 KAMCEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGGTLHHRTAFAGATTGQQLLYALDEQVRRYEVAGLVTKYEGWEFLG 162 (589)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCcEeeeccCCeecccccccCCCcHHHHHHHHHHHHHhhhccCCcEEEeeEEEEE
Confidence 9999999999999999999999888888877788999999999888889999999998887653 2389999999999
Q ss_pred EEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchHHHHHHHcCCeecCcccccccccc
Q 006387 241 LLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTA 320 (647)
Q Consensus 241 l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~ 320 (647)
|+++++| +|+||.+.+..+++.+.|.||+|||||||++.+|..+++++.+||||++||+++||.+.||||+||||+.
T Consensus 163 Li~~~~g---~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~y~~tt~~~~~tGdG~~mA~~aGA~l~~mef~q~hPt~ 239 (589)
T PRK08641 163 AVLDDEG---VCRGIVAQDLFTMEIESFPADAVIMATGGPGIIFGKSTNSTINTGSAASRVYQQGAYYANGEFIQIHPTA 239 (589)
T ss_pred EEECCCC---EEEEEEEEECCCCcEEEEECCEEEECCCCCcCCCCCCCCCCCCchHHHHHHHHcCCCCcCCccEEEeeee
Confidence 9986556 8999999987778888899999999999999999999999999999999999999999999999999987
Q ss_pred ccCCCCCCCCCCCCCccceeeecccCCCceEE-eCCCCc--cccc-cccccccCchhHHHHHHHHHHHh-c----CCCeE
Q 006387 321 LADEGLPIKPKKTRENSFLITEAVRGDGGILY-NLGMER--FMPL-YDERAELAPRDVVARSIDDQLKK-R----NEKYV 391 (647)
Q Consensus 321 ~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~v-n~~G~r--f~~~-~~~~~~l~~rd~~~~~i~~~~~~-~----~~~~v 391 (647)
+...+ ..++++++++++|+.++ |.+|+| ||++ |+..+++++||++++++..++.. + +...+
T Consensus 240 ~~~~~----------~~~l~~e~~rg~G~~l~~n~~G~Rf~f~~e~~~~~~~l~~rd~v~~ai~~~~~~~~~g~~g~~~v 309 (589)
T PRK08641 240 IPGDD----------KLRLMSESARGEGGRVWTYKDGKPWYFLEEKYPAYGNLVPRDIATREIFDVCVEQKLGINGENMV 309 (589)
T ss_pred ecCCC----------cceEeeeeeccCCcEEEECCCCCCcccccccCCcccccCChhHHHHHHHHHHHHhcCCCCCCceE
Confidence 75321 13578999999998664 799999 6665 55567899999999999997732 2 22469
Q ss_pred EEecCCCChhHHHhhChhHHHHHHH-cCCCCCCCCeeeeeeeceecCceEECCCCCcccCceeecccccCCCCCCCCccc
Q 006387 392 LLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLA 470 (647)
Q Consensus 392 ~ld~~~~~~~~l~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~ 470 (647)
|+|+++.+.+.+.++||.+.+.+.. .|+|+.++|++|.|++||+||||+||.+++|+|||||||||++ +|+||+|||+
T Consensus 310 ~ld~~~~~~e~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~h~~~GGi~vd~~~~t~I~GLyAaGE~~-~g~hGanrlg 388 (589)
T PRK08641 310 YLDLSHKDPKELDIKLGGILEIYEKFTGDDPRKVPMKIFPAVHYSMGGLWVDYDQMTNIPGLFAAGECD-YSYHGANRLG 388 (589)
T ss_pred EEEcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCceeeehHHheeCCCeEECCCCCeECCCEEECcccc-cCCCCCCccc
Confidence 9999999999999999998888887 5999999999999999999999999999999999999999997 6999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhcccccccccccccccccCcccccccchh-----hhhcHHHHHHHHHHHHHhcCcccc
Q 006387 471 SNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHN-----ILRRTKEVRKELQSIMWRYVGIVR 545 (647)
Q Consensus 471 g~sl~~a~v~G~~Ag~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~m~~~~g~~r 545 (647)
||||++|+|||++||++|+++++................ ........+.. ....+.+++++||++||+|+||+|
T Consensus 389 gnsl~~~lv~Gr~Ag~~aa~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R 467 (589)
T PRK08641 389 ANSLLSAIYGGMVAGPNAVEYIKGLGKSADDVSSSVFEQ-ALKQEQEKFDNILSMDGTENAYVLHKELGEWMTDNVTVVR 467 (589)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcccccccCCcchhhH-HHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 999999999999999999998754211000000000000 00000000000 012356788899999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhccC-cccccchHHHHHHHhHHHHHHHHHHHHHhcCcCcccccccCCCCCccCCCCC
Q 006387 546 STTSLQTAEWRIDELEAEWETYLFEHG-WEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLP 624 (647)
Q Consensus 546 ~~~~l~~al~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~~ 624 (647)
++++|++||++|++|++++.++...+. ...+.++++++|++|||++|+++++|||+|+||||+|||+|||++||++|++
T Consensus 468 ~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~el~n~l~~a~~i~~aal~R~ESRG~H~R~D~P~~~d~~~~~ 547 (589)
T PRK08641 468 ENDKLLETDEKIQELMERYKRISVNDTSRWSNQGASFTRQLWNMLELARVITIGALNRNESRGAHYKPEFPERNDENWLK 547 (589)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCCCccCchhhhc
Confidence 999999999999999988765432111 1124567888999999999999999999999999999999999999987877
Q ss_pred eeec
Q 006387 625 TIIL 628 (647)
Q Consensus 625 ~~~~ 628 (647)
+++.
T Consensus 548 ~~~~ 551 (589)
T PRK08641 548 TTMA 551 (589)
T ss_pred eEEE
Confidence 7653
No 12
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=4.2e-91 Score=782.84 Aligned_cols=555 Identities=24% Similarity=0.345 Sum_probs=454.5
Q ss_pred cccCCCCchhhhhhhccccccccccCCCCccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCC-CCCccccCCCee
Q 006387 57 RFNFSHSPVSENWKSLRTVPVLSCLRDGSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH-ESNTNYAQGGVS 134 (647)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~-~G~t~~a~Ggi~ 134 (647)
..++|..|.+..|....+.. ...+..+..++||||||||.|||+||+.|++.| +|+||||.... +|+|.+++||++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~g~s~~a~GGi~ 83 (640)
T PRK07573 6 DAKIPEGPIEEKWDRYKFHL--KLVNPANKRKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRAHSIAAQGGIN 83 (640)
T ss_pred cCCCCCCcchhhhhhccccc--cccCCccccccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhchH
Confidence 35789999999997644333 222333446799999999999999999999999 99999986654 468888999987
Q ss_pred eecC---CCCCHHHHHHHHHHhcccCCCHHHHHHHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCC
Q 006387 135 AVLC---PSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADM 211 (647)
Q Consensus 135 ~~~~---~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~ 211 (647)
+..+ +.|+++.|+.|+++.+.+++|+++++.+++++++.++||.++|++|.++.++.+.....++|+.+|+++..+.
T Consensus 84 a~~~~~~~~Ds~~~~~~d~~~~g~~~~d~~lv~~l~~~s~~~i~wL~~~GV~f~~~~~g~~~~~~~gghs~~R~~~~~~~ 163 (640)
T PRK07573 84 AAKNYQNDGDSVYRLFYDTVKGGDFRAREANVYRLAEVSVNIIDQCVAQGVPFAREYGGLLANRSFGGAQVSRTFYARGQ 163 (640)
T ss_pred hHhhccccCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCCccccCCCCceeccccCCcccceeEeCCCC
Confidence 5543 5799999999999999999999999999999999999999999999987777776677899999999998888
Q ss_pred chHHHH----HHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCC
Q 006387 212 TGREIE----RALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPST 287 (647)
Q Consensus 212 ~g~~~~----~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~ 287 (647)
+|..++ ..|.+.+.+ .||+|++++.+++|+.+ ++ +|+||.+.+..+|+...|.||+|||||||++++|..+
T Consensus 164 tG~~i~~~l~~~L~~~~~~-~gV~i~~~t~v~~Li~d-~g---~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~~~~t 238 (640)
T PRK07573 164 TGQQLLLGAYQALSRQIAA-GTVKMYTRTEMLDLVVV-DG---RARGIVARNLVTGEIERHTADAVVLATGGYGNVFYLS 238 (640)
T ss_pred CchhHHHHHHHHHHHHHHh-cCCEEEeceEEEEEEEe-CC---EEEEEEEEECCCCcEEEEECCEEEECCCCcccCCCCC
Confidence 888777 445556655 59999999999999986 56 8999999876678878899999999999999999989
Q ss_pred CCCCCCcchHHHHHHHcCCeecCccccccccccccCCCCCCCCCCCCCccceeeecccCCCceEEeCCC-----------
Q 006387 288 TNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGM----------- 356 (647)
Q Consensus 288 ~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G----------- 356 (647)
+++..+||||+.||+++||.+.||||+||||+.+...+.. . ...++++++++++|++++|.+|
T Consensus 239 t~~~~~tGdGi~mA~~aGA~l~~me~vq~hPt~~~~~g~~----~--~~~~li~ea~rg~G~ilvn~~g~~~~~~~~~~~ 312 (640)
T PRK07573 239 TNAMGSNATAIWRAHKKGAYFANPCFTQIHPTCIPVSGDY----Q--SKLTLMSESLRNDGRIWVPKKKGDKRKPNDIPE 312 (640)
T ss_pred CCCCCcCcHHHHHHHHcCCCccCccceeeccccccCCCcc----c--ccceEEeccccCCceEEEcCccccccccccccc
Confidence 9999999999999999999999999999999877543210 0 0146889999999999999984
Q ss_pred -Cc--ccccccc-ccccCchhHHHHHHHHHHHhcCC-----CeEEEecCC----CChhHHHhhChhHHHHHHH-cCCCCC
Q 006387 357 -ER--FMPLYDE-RAELAPRDVVARSIDDQLKKRNE-----KYVLLDISH----KPTEKILSHFPNIAAECLK-YGLDIT 422 (647)
Q Consensus 357 -~r--f~~~~~~-~~~l~~rd~~~~~i~~~~~~~~~-----~~v~ld~~~----~~~~~l~~~~~~~~~~~~~-~G~d~~ 422 (647)
+| ||.+|.+ .++|+|||+++++|+.+++++++ .+||||+++ .+.+.+.++||.+.+.+.. .|+||.
T Consensus 313 ~~~~~f~~~~~~~~~el~~rd~v~rai~~e~~~grg~~~~~~~v~ld~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~d~~ 392 (640)
T PRK07573 313 EERDYYLERRYPAFGNLVPRDVASRAAKERCDAGRGVGPTGLGVYLDFADAIKRLGKDVIRERYGNLFDMYERITGENPY 392 (640)
T ss_pred chhhhchhhhCccccCCCCcCHHHHHHHHHHHhcCCCCCCCCEEEEeCchhhhhcCHHHHHHhChHHHHHHHHhcCCCcc
Confidence 56 9987665 57999999999999999988643 369999985 5667789999999999887 599999
Q ss_pred CCCeeeeeeeceecCceEECCCCCcccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHHH-HHHhhhcc-cc-cc
Q 006387 423 SQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQP-SIDHKKST-SI-DL 499 (647)
Q Consensus 423 ~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~-a~~~~~~~-~~-~~ 499 (647)
++||||.|++||+||||+||.+++|+||||||||||+ +|+||+|||+||||++|+|||++||+. |++|++.. .. +.
T Consensus 393 ~~~i~v~p~~hy~~GGi~vd~~~~T~i~GLyAaGE~~-~g~HGanRL~~nsL~e~lv~G~~ag~~~a~~~~~~~~~~~~~ 471 (640)
T PRK07573 393 ETPMRIYPAVHYTMGGLWVDYNLMSTIPGLFVIGEAN-FSDHGANRLGASALMQGLADGYFVLPYTIGNYLADTIGTPKV 471 (640)
T ss_pred cCeeeeecccceecCCEEECCCCccccCCEEECcccc-ccCCCcccccchhHHHHHHHHHHHhHHHHHHHHHhhcccccC
Confidence 9999999999999999999999999999999999996 799999999999999999999999988 66766432 10 00
Q ss_pred cc-cccccccccCcccccccchh---h--hhcHHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhhc--c
Q 006387 500 SA-SNWWTRTVVPKSLGCNVMHN---I--LRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFE--H 571 (647)
Q Consensus 500 ~~-~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~al~~l~~l~~~~~~~~~~--~ 571 (647)
.. ...... ... ....++.. . ...+.+++++||++||+|+||+|++++|++|+++|++|++++...... .
T Consensus 472 ~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~ 548 (640)
T PRK07573 472 STDHPEFKE-AEA--EVQDRIDRLLNIKGKRTVDSFHRELGKIMWDYCGMARNEEGLKKALEKIRALREEFWKNVRVPGS 548 (640)
T ss_pred Cccccchhh-HHH--HHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCccEEeCHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 00 000000 000 00000000 0 124678889999999999999999999999999999998876532211 1
Q ss_pred CcccccchHHHHHHHhHHHHHHHHHHHHHhcCcCcccccccCCC------CCccCCCCCeeec
Q 006387 572 GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP------HVEENKRLPTIIL 628 (647)
Q Consensus 572 ~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P------~~d~~~~~~~~~~ 628 (647)
....++++++++|++||+++|+++++|||+|+||||+|||+||| ++||++|++++++
T Consensus 549 ~~~~~~~~~~~~el~n~l~~A~~i~~aAl~R~ESRG~H~R~D~P~~~~~~~~~d~~~~~~~~~ 611 (640)
T PRK07573 549 ADELNQELEKAGRVADFLELGELMCRDALHREESCGGHFREEHQTEDGEALRDDENFAYVAAW 611 (640)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCccCCCCccccccChhhhceEEEE
Confidence 11235678899999999999999999999999999999999999 6777667766654
No 13
>PRK09077 L-aspartate oxidase; Provisional
Probab=100.00 E-value=2.3e-90 Score=767.01 Aligned_cols=519 Identities=47% Similarity=0.753 Sum_probs=445.2
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcCCeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHHHH
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 165 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~ 165 (647)
+.++||||||+|+|||+||+.|++..+|+||||....+|+|.+++||+++..++.|+++.|++|+++.+.+++|+++++.
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~~~VilveK~~~~~g~t~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~ 85 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEHRRVAVLSKGPLSEGSTFYAQGGIAAVLDETDSIESHVEDTLIAGAGLCDEDAVRF 85 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHCCCEEEEeccCCCCCChhhccCCeeeccCCCccHHHHHHHHHHHccCCCCHHHHHH
Confidence 45799999999999999999998744999999999888999999999998888889999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHcCCCcccCCC--C--CccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEE
Q 006387 166 VCTEGPDRIRELIAIGASFDRGED--G--NLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDL 241 (647)
Q Consensus 166 ~~~~~~~~i~~l~~~Gv~~~~~~~--g--~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l 241 (647)
+++++++.++||+++|++|.+..+ | .+....+++|+.+|+++..+.+|..+...|.+.+.+.+||+|++++.+++|
T Consensus 86 ~~~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~I~v~~~~~v~~L 165 (536)
T PRK09077 86 IAENAREAVQWLIDQGVPFTTDEQANGEEGYHLTREGGHSHRRILHAADATGKAVQTTLVERARNHPNITVLERHNAIDL 165 (536)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCCccccccccCCCCccCCceEecCCCCHHHHHHHHHHHHHhCCCcEEEeeEEeeee
Confidence 999999999999999999987654 3 456677899999999999999999999999999987679999999999999
Q ss_pred EecC-----CCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchHHHHHHHcCCeecCcccccc
Q 006387 242 LTTL-----DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQF 316 (647)
Q Consensus 242 ~~~~-----~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~ 316 (647)
+.++ ++ +|+||.+.+..+|+...|.||.|||||||++++|..+++++.+||||+.||+++||.+.||||+||
T Consensus 166 i~~~~~~~~~g---~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me~~q~ 242 (536)
T PRK09077 166 ITSDKLGLPGR---RVVGAYVLNRNKERVETIRAKFVVLATGGASKVYLYTTNPDIASGDGIAMAWRAGCRVANMEFNQF 242 (536)
T ss_pred eecccccCCCC---EEEEEEEEECCCCcEEEEecCeEEECCCCCCCCCCCCcCCCCCCcHHHHHHHHcCCcCcCccceeE
Confidence 9863 25 899999988777888889999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCCCCCCccceeeecccCCCceEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCCeEEEecC
Q 006387 317 HPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDIS 396 (647)
Q Consensus 317 ~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~l~~rd~~~~~i~~~~~~~~~~~v~ld~~ 396 (647)
||+.+..++ ...++++++++++|++++|.+|+|||++|++..+++|||+++++|..++.+.+..++|+|.+
T Consensus 243 ~pt~~~~~~---------~~~~l~~e~~rg~g~~lvn~~G~RF~~~~~~~~el~~rd~v~~ai~~~~~~~g~~~v~ld~~ 313 (536)
T PRK09077 243 HPTCLYHPQ---------ARSFLITEALRGEGAYLKLPDGTRFMPDFDERAELAPRDIVARAIDHEMKRLGADCVYLDIS 313 (536)
T ss_pred ecceecCCC---------CCceeecHHHcCCCCEEECCCCCCcccccCcccccCchhHHHHHHHHHHHhcCCCeEEEECC
Confidence 999874321 11567889999999999999999999999998899999999999999988755568999999
Q ss_pred CCChhHHHhhChhHHHHHHHcCCCCCCCCeeeeeeeceecCceEECCCCCcccCceeecccccCCCCCCCCccchhhhHH
Q 006387 397 HKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLE 476 (647)
Q Consensus 397 ~~~~~~l~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~ 476 (647)
+.+.+.+.+++|++.+.+...|+|+.++|++|.|.+||++|||+||.+++|+|||||||||++|+|+||+|||+||||++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~g~d~~~~pi~v~p~~h~t~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~ 393 (536)
T PRK09077 314 HKPADFIRQHFPTIYERCLELGIDITKEPIPVVPAAHYTCGGVMVDLHGRTDLDGLYAIGEVSYTGLHGANRMASNSLLE 393 (536)
T ss_pred CCcHHHHHHHChHHHHHHHHhCcCCCCCceeeeeeeeEecCCeeECCCCccccCCEEecccccccccCCCccchhhhHHH
Confidence 99888888899999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccccccccccccccccCcccccccchhhhhcHHHHHHHHHHHHHhcCccccCHHHHHHHHHH
Q 006387 477 ALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWR 556 (647)
Q Consensus 477 a~v~G~~Ag~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~al~~ 556 (647)
|+|||++||++|+++......+.. ........... . ..+ ..+...+++||++||+|+||+|++++|++++++
T Consensus 394 ~~vfG~~Ag~~aa~~~~~~~~~~~-~~~~~~~~~~~----~-~~~--~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~ 465 (536)
T PRK09077 394 CLVYGRSAAEDILSRLPKAPMPPT-LPAWDESRVTD----S-DEE--VVIQHNWHELRLFMWDYVGIVRTTKRLERALHR 465 (536)
T ss_pred HHHHHHHHHHHHHHhhcccCcccc-cchhhhhhhhc----c-ccc--cchhHHHHHHHHHHHhCCCEEECHHHHHHHHHH
Confidence 999999999999987532110000 00000000000 0 000 113345579999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCcccccchHHHHHHHhHHHHHHHHHHHHHhcCcCcccccccCCCCCccCCCCCeee-cCC
Q 006387 557 IDELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTII-LPS 630 (647)
Q Consensus 557 l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~~~~~-~~~ 630 (647)
|++|++++..... .. ....+++|++|||++|+++++|||.||||||+|||+|||++||+| +++++ .|+
T Consensus 466 l~~l~~~~~~~~~--~~---~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~~~~-~~~~~~~~~ 534 (536)
T PRK09077 466 IRLLQQEIDEYYA--NF---RVSNNLLELRNLVQVAELIVRCAMERKESRGLHYTLDYPELLPEA-GPTILSPPN 534 (536)
T ss_pred HHHHHHHHHHHhh--hc---ccCHHHHHHHHHHHHHHHHHHHHHhCCCCccceecCCCccccccc-CceEeecCC
Confidence 9999877653211 11 112356899999999999999999999999999999999999985 44444 443
No 14
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=1.2e-90 Score=775.41 Aligned_cols=525 Identities=37% Similarity=0.583 Sum_probs=448.9
Q ss_pred CccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecC--CCCCHHHHHHHHHHhcccCCCHH
Q 006387 85 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC--PSDSVESHMQDTIVAGAYLCDDE 161 (647)
Q Consensus 85 ~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~--~~d~~~~~~~~~~~~g~~~~~~~ 161 (647)
++.++||||||||.|||+||+.|++.| +|+||||....+|+|.+++||+.+..+ +.|+++.|+.|+++.+.+++|++
T Consensus 9 ~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~~ds~~~~~~dt~~~g~~~~d~~ 88 (591)
T PRK07057 9 PRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGSDWLGDQD 88 (591)
T ss_pred ccccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhccCCcccccccccccChhHhHHHHHHhcCCCCCHH
Confidence 356799999999999999999999999 999999999889999999999987654 57899999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccc-------cceeeccCCchHHHHHHHHHHHHcCCCcEEEc
Q 006387 162 TVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSH-------HRIVHAADMTGREIERALLEAVVSDPNISVFE 234 (647)
Q Consensus 162 ~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~-------~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~ 234 (647)
+++.+++++++.++||.++|++|++..+|.+....+++|+. +|+++..+.+|..++..|.+.+.+ .|++++.
T Consensus 89 ~v~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~l~~~L~~~~~~-~gi~i~~ 167 (591)
T PRK07057 89 AIEFMCREAPNVVYELEHFGMPFDRNADGTIYQRPFGGHTANYGEKPVQRACAAADRTGHALLHTLYQQNVA-AKTQFFV 167 (591)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcceeCCCCcEeeeccCCccccccCCccceeeecCCCChHHHHHHHHHHHHh-cCCEEEe
Confidence 99999999999999999999999988888777777788754 688888888999999999998877 5999999
Q ss_pred ceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchHHHHHHHcCCeecCcccc
Q 006387 235 HHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFV 314 (647)
Q Consensus 235 ~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~ 314 (647)
++.+++|+.++++ +|.||.+.+..+|+...|.||+|||||||++.+|..++++..+||||+.||+++||.+.+|||+
T Consensus 168 ~~~~~~Li~~~~g---~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~t~~~~~tGdG~~mA~~aGA~l~~me~~ 244 (591)
T PRK07057 168 EWMALDLIRDADG---DVLGVTALEMETGDVYILEAKTTLFATGGAGRIFAASTNAFINTGDGLGMAARAGIPLQDMEFW 244 (591)
T ss_pred CcEEEEEEEcCCC---eEEEEEEEEcCCCeEEEEECCeEEECCCCcccccCCcCCCCCcCcHHHHHHHHcCCCeeCcccc
Confidence 9999999986556 8999999887788888899999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCCCCCCCCccceeeecccCCCceEEeCCCCcccccccc-ccccCchhHHHHHHHHHHHhcC-----C
Q 006387 315 QFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDE-RAELAPRDVVARSIDDQLKKRN-----E 388 (647)
Q Consensus 315 q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~-~~~l~~rd~~~~~i~~~~~~~~-----~ 388 (647)
||||+.+... .+++++.++++|++++|.+|+|||++|++ ..++.+||++++++..++.++. .
T Consensus 245 q~~pt~~~~~------------~~l~~e~~rg~g~ilvn~~GeRF~~~~~~~~~el~~rd~v~~ai~~e~~~g~g~~~~~ 312 (591)
T PRK07057 245 QFHPTGVAGA------------GVLITEGVRGEGGILRNKDGERFMERYAPTLKDLAPRDFVSRSMDQEIKEGRGCGPNG 312 (591)
T ss_pred cccCCccCCC------------ceEEeecccCCceEEECCCCCCchhhcCccccccccHHHHHHHHHHHHHhcCCcCCCC
Confidence 9999866421 46788999999999999999999999987 4689999999999999987643 2
Q ss_pred CeEEEecCCCChhHHHhhChhHHHHHHHc-CCCCCCCCeeeeeeeceecCceEECCCCCc---------ccCceeecccc
Q 006387 389 KYVLLDISHKPTEKILSHFPNIAAECLKY-GLDITSQPIPVVPAAHYMCGGVRAGLQGET---------NVRGLYVAGEV 458 (647)
Q Consensus 389 ~~v~ld~~~~~~~~l~~~~~~~~~~~~~~-G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T---------~ipGLyAaGe~ 458 (647)
.++|+|.++.+.+.+..++|++.+++..+ ++|+.++|++|.|++||+||||.||.+++| +|||||||||+
T Consensus 313 ~~v~lD~~~~~~~~~~~~~~~i~e~~~~~~~~d~~~~pi~v~p~~h~t~GGi~vd~~g~~~~~~~~~g~~IpGLyAaGE~ 392 (591)
T PRK07057 313 DHVLLDLTHLGAETIMKRLPSIREIALKFANVDCIKEPIPVVPTIHYQMGGIPTNIHGQVVGTSRDHKEPVNGFYAIGEC 392 (591)
T ss_pred CEEEEeCCCCCHHHHHHHccHHHHHHHHhcCCCCCCCCeeeehhHheeCCCeeECCCCcEeccccCCCCeeCCeEeCccc
Confidence 46999999998888888999999999887 699999999999999999999999999998 79999999999
Q ss_pred cCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhccc--ccccccccccccccCcccccccchhhhhcHHHHHHHHHHH
Q 006387 459 ACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTS--IDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSI 536 (647)
Q Consensus 459 a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 536 (647)
+|+|+||+|||+||||++|+|||++||++|+++++... .++.... ..... . .............+.+++++||++
T Consensus 393 a~~g~hGanrl~gnsl~~~~v~Gr~Ag~~aa~~~~~~~~~~~~~~~~-~~~~~-~-~~~~~~~~~~~~~~~~~~~~l~~~ 469 (591)
T PRK07057 393 SCVSVHGANRLGTNSLLDLVVFGRAAGNHIVDHVKKQHEHKPLPADA-ADFSL-A-RLAKLDKSTSGEYAQDVANDIRAT 469 (591)
T ss_pred cccCCCccccchhhHHHHHHHHHHHHHHHHHHHhhccCCCcchhhhh-hHHHH-H-HHhhhhccccccCHHHHHHHHHHH
Confidence 98899999999999999999999999999998864321 0110000 00000 0 000000000112477889999999
Q ss_pred HHhcCccccCHHHHHHHHHHHHHHHHHHHHhhhccCcc-cccchHHHHHHHhHHHHHHHHHHHHHhcCcCcccccccCCC
Q 006387 537 MWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWE-QTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP 615 (647)
Q Consensus 537 m~~~~g~~r~~~~l~~al~~l~~l~~~~~~~~~~~~~~-~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P 615 (647)
||+|+||+|++++|++||++|++|++++..+...+... .+.++++++|++|||++|++|++|||+|+||||+|||+|||
T Consensus 470 m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P 549 (591)
T PRK07057 470 MQKHAGVFRTQALLDEGVEQILALAERVENIHLKDKSKVFNTARVEALEVANLIEVARATMVSAAARKESRGAHAHSDYE 549 (591)
T ss_pred HHhcCCeEECHHHHHHHHHHHHHHHHHHHHhccCCccchhchhhHHHHHHHhHHHHHHHHHHHHHhCCCCccccCCCCCC
Confidence 99999999999999999999999998876543211111 23356889999999999999999999999999999999999
Q ss_pred CCccCCCCCeeec
Q 006387 616 HVEENKRLPTIIL 628 (647)
Q Consensus 616 ~~d~~~~~~~~~~ 628 (647)
+++|++|.+++++
T Consensus 550 ~~~d~~~~~~~~~ 562 (591)
T PRK07057 550 HRDDENWLKHTLW 562 (591)
T ss_pred CCCchhhcceEEE
Confidence 9988877777654
No 15
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=1.3e-90 Score=776.07 Aligned_cols=521 Identities=34% Similarity=0.508 Sum_probs=449.3
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecC--CCCCHHHHHHHHHHhcccCCCHHH
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC--PSDSVESHMQDTIVAGAYLCDDET 162 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~--~~d~~~~~~~~~~~~g~~~~~~~~ 162 (647)
..++||||||||+|||+||+.|++.| +|+||||....+|++.+++||+.+... +.|+++.|+.|+++.+.+++|+++
T Consensus 10 ~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~l 89 (598)
T PRK09078 10 DHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGSDWLGDQDA 89 (598)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcchhhhcCCcccccCCCCCCCHHHHHHHHHHhccCCCCHHH
Confidence 45799999999999999999999999 999999999888999999999987655 478999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCcc--------ccceeeccCCchHHHHHHHHHHHHcCCCcEEEc
Q 006387 163 VRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHS--------HHRIVHAADMTGREIERALLEAVVSDPNISVFE 234 (647)
Q Consensus 163 ~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~--------~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~ 234 (647)
++.+++++++.++||.++|++|++..+|.+....+++|+ .+|+++..+.+|..++..|.+.+.+ .||++++
T Consensus 90 v~~l~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~~-~gi~i~~ 168 (598)
T PRK09078 90 IEYMCREAPAAVYELEHYGVPFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSLK-HNAEFFI 168 (598)
T ss_pred HHHHHHHHHHHHHHHHHcCCcceecCCCceeecccCceecccCCCCccceeEecCCCCHHHHHHHHHHHHhh-cCCEEEE
Confidence 999999999999999999999998888887777778874 5788998888999999999999987 5999999
Q ss_pred ceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchHHHHHHHcCCeecCcccc
Q 006387 235 HHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFV 314 (647)
Q Consensus 235 ~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~ 314 (647)
++.+++|++++++ +|+||.+.+..+|+.+.|.||+|||||||++++|..++++..+||||+.||+++||.+.+|||+
T Consensus 169 ~~~v~~Li~~~~g---~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~~~~t~~~~~tGdGi~ma~~aGA~l~~me~~ 245 (598)
T PRK09078 169 EYFALDLIMDDGG---VCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRAYFSATSAHTCTGDGGGMVLRAGLPLQDMEFV 245 (598)
T ss_pred eEEEEEEEEcCCC---EEEEEEEEECCCCcEEEEEcCEEEECCCCCccccCccCCCCCcccHHHHHHHHcCCCccCCchh
Confidence 9999999987446 8999999877788888999999999999999999888899999999999999999999999999
Q ss_pred ccccccccCCCCCCCCCCCCCccceeeecccCCCceEEeCCCCccccccccc-cccCchhHHHHHHHHHHHhcCC-----
Q 006387 315 QFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVARSIDDQLKKRNE----- 388 (647)
Q Consensus 315 q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~-~~l~~rd~~~~~i~~~~~~~~~----- 388 (647)
||||+.+... .+++++.++++|+++||.+|+|||++|++. .++++||++++++..++.++.+
T Consensus 246 q~~pt~~~~~------------~~l~~e~~rg~G~ilvN~~GeRF~~ey~~~~~el~~rd~v~~ai~~e~~~~~g~~~~~ 313 (598)
T PRK09078 246 QFHPTGIYGA------------GCLITEGARGEGGYLTNSEGERFMERYAPSAKDLASRDVVSRAMTIEIREGRGVGKKK 313 (598)
T ss_pred eecccccCCC------------ceEEeecccCCceEEECCCCCCCchhcCccccccccchHHHHHHHHHHHhcCCCCCCC
Confidence 9999876421 457788999999999999999999999876 5899999999999999876532
Q ss_pred CeEEEecCCCChhHHHhhChhHHHHHHH-cCCCCCCCCeeeeeeeceecCceEECCCCC----------cccCceeeccc
Q 006387 389 KYVLLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGE----------TNVRGLYVAGE 457 (647)
Q Consensus 389 ~~v~ld~~~~~~~~l~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~----------T~ipGLyAaGe 457 (647)
..+|+|+++++.+.+.+++|.+.+.+.. .|+|+.++|++|.|+.||+||||.||.+++ |+|||||||||
T Consensus 314 ~~v~ld~~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~pi~v~p~~h~t~GGi~vd~~~~v~~~~~~~~~t~I~GLyAaGE 393 (598)
T PRK09078 314 DHIFLHLDHLDPEVLHERLPGISESAKIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVLTKTGDNPDAVVPGLMAVGE 393 (598)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCcEEeecccEEcCCCcccCCCceeecccccccCCccCceeeccc
Confidence 4699999999999999999998888877 699999999999999999999999999987 48999999999
Q ss_pred ccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhcccccccccccccccccCcccccccchh-----hhhcHHHHHHH
Q 006387 458 VACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHN-----ILRRTKEVRKE 532 (647)
Q Consensus 458 ~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 532 (647)
|+|+|+||+|||+||+|++|+|||++||++|+++++....... . ... .... ....+.. ....+.+++++
T Consensus 394 ~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~~~~~~~~-~--~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 467 (598)
T PRK09078 394 AACVSVHGANRLGSNSLIDLVVFGRAAALRAAEVIKPGAPHPP-L--PKD-ACDK--ALDRFDRLRHANGGTPTAELRLK 467 (598)
T ss_pred ccccCCcCcccccchhHHHHHHHHHHHHHHHHHhhhccCCCcc-c--chh-hHHH--HHHHHHHhhhccCCCCHHHHHHH
Confidence 9988999999999999999999999999999988643210000 0 000 0000 0000000 01246788899
Q ss_pred HHHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhhccC-cccccchHHHHHHHhHHHHHHHHHHHHHhcCcCcccccc
Q 006387 533 LQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHG-WEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYM 611 (647)
Q Consensus 533 l~~~m~~~~g~~r~~~~l~~al~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R 611 (647)
||++||+++||+|++++|++|+++|++|++++..+...+. ...++++++++|++||+++|+++++|||+|+||||+|||
T Consensus 468 l~~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~a~~~~~aal~R~ESRG~H~R 547 (598)
T PRK09078 468 MQRTMQEDAAVFRTGEVLEEGVEKISEVWAGLPDIKVTDRSLIWNSDLVETLELDNLMAQAVVTMESAENRKESRGAHAR 547 (598)
T ss_pred HHHHHhCCeeEEECHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhccCccchhcc
Confidence 9999999999999999999999999999988765421111 123467889999999999999999999999999999999
Q ss_pred cCCCCCccCCCCCeeec
Q 006387 612 VDFPHVEENKRLPTIIL 628 (647)
Q Consensus 612 ~D~P~~d~~~~~~~~~~ 628 (647)
+|||++||++|+++++.
T Consensus 548 ~D~P~~~d~~~~~~~~~ 564 (598)
T PRK09078 548 EDFPDRDDENWMKHTLA 564 (598)
T ss_pred CCCCccCccccccEEEE
Confidence 99999988778777653
No 16
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=100.00 E-value=2.4e-90 Score=772.82 Aligned_cols=524 Identities=27% Similarity=0.371 Sum_probs=442.0
Q ss_pred EEEECcchHHHHHHHHHHhcC-CeEEEEecC-CCCCCccccCCCeeeecC---CCCCHHHHHHHHHHhcccCCCHHHHHH
Q 006387 91 FSVIGSGVAGLCYALEVAKHG-TVAVITKAE-PHESNTNYAQGGVSAVLC---PSDSVESHMQDTIVAGAYLCDDETVRV 165 (647)
Q Consensus 91 VlVIGgG~AGl~AA~~aa~~G-~V~llEk~~-~~~G~t~~a~Ggi~~~~~---~~d~~~~~~~~~~~~g~~~~~~~~~~~ 165 (647)
|||||+|+|||+||+.|++.| +|+||||.. ..+|++.+++||+++..+ ..|+++.|++|+++.+.+++|+++++.
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~g~s~~a~Ggi~a~~~~~~~~ds~e~~~~d~~~~g~~~~d~~lv~~ 80 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRRAHSIAAQGGINGAVNTKGDGDSPWRHFDDTVKGGDFRARESPVKR 80 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCCccchhhhhhhhhhcccCCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence 799999999999999999999 999999998 556788889998876543 578999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcC---CCcEEEcceEEEEEE
Q 006387 166 VCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSD---PNISVFEHHFAIDLL 242 (647)
Q Consensus 166 ~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~---~gv~i~~~~~v~~l~ 242 (647)
+++++++.++||.++|++|.++.+|.+....+++|+++|+++..+.+|..++..|.+.+++. .||++++++.+++|+
T Consensus 81 l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li 160 (603)
T TIGR01811 81 LAVASPEIIDLMDAMGVPFAREYGGLLDTRSFGGVQVSRTAYARGQTGQQLLLALDSALRRQIAAGLVEKYEGWEMLDII 160 (603)
T ss_pred HHHHHHHHHHHHHHcCCEEEecCCCccccccccCcccCcceecCCCChhHHHHHHHHHHHhhhccCCcEEEeCcEEEEEE
Confidence 99999999999999999999888887777778999999999988888999998887776542 489999999999999
Q ss_pred ecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchHHHHHHHcCCeecCcccccccccccc
Q 006387 243 TTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALA 322 (647)
Q Consensus 243 ~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~ 322 (647)
+++++ +|+||.+.+..+|+...|.||+|||||||++++|..++++..+||||+.||+++||.+.||||+||||+.+.
T Consensus 161 ~dd~g---rV~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~~~~~t~~~~~tGdGi~mA~~aGa~l~~me~vq~~Pt~~~ 237 (603)
T TIGR01811 161 VVDGN---RARGIIARNLVTGEIETHSADAVILATGGYGNVFGKSTNAMNSNASAAWRAYEQGAYFANPEFIQIHPTAIP 237 (603)
T ss_pred EcCCC---EEEEEEEEECCCCcEEEEEcCEEEECCCCCcCcCCccCCCCCcCcHHHHHHHHcCCCCcCCcceEEEeeeec
Confidence 87555 899999987667887889999999999999999999999999999999999999999999999999999875
Q ss_pred CCCCCCCCCCCCCccceeeecccCCCceEEeC------------CCCc--cccc-cccccccCchhHHHHHHHHHHHhcC
Q 006387 323 DEGLPIKPKKTRENSFLITEAVRGDGGILYNL------------GMER--FMPL-YDERAELAPRDVVARSIDDQLKKRN 387 (647)
Q Consensus 323 ~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~------------~G~r--f~~~-~~~~~~l~~rd~~~~~i~~~~~~~~ 387 (647)
..+.. ....+++++++|++|++++|. +|+| ||.+ |++.++|+|||+++++|..++.+++
T Consensus 238 ~~g~~------~~~~~li~ea~rgeg~ilvn~~~~~~~~~~~~~~g~r~~f~~~~~~~~~~la~rd~vs~ai~~~~~~g~ 311 (603)
T TIGR01811 238 VDGTW------QSKLRLMSESLRNDGRIWTPKEKNDNRDPNTIPEDKRDYFLERRYPAFGNLVPRDIASRAIFQVCDAGK 311 (603)
T ss_pred CCCcc------cccceEeeeeeccCCcEEECccccccccccccccCchhhhhhhhcccccccCchHHHHHHHHHHHHhcC
Confidence 42210 001367899999999999999 9999 8864 5667899999999999999998752
Q ss_pred -----CCeEEEecCCCCh----hHHHhhChhHHHHHHH-cCCCCCCCCeeeeeeeceecCceEECCCCCcccCceeeccc
Q 006387 388 -----EKYVLLDISHKPT----EKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGE 457 (647)
Q Consensus 388 -----~~~v~ld~~~~~~----~~l~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe 457 (647)
..+||||+++++. +.+.++||.+.+.+.+ .|+|+.++||||.|++||+||||+||.+++|+|||||||||
T Consensus 312 g~~~~~~~v~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~i~v~p~~H~~~gG~~~d~~~~t~i~gL~a~Ge 391 (603)
T TIGR01811 312 GVGPGENAVYLDFSDADERLGRKEIDAKYGNLFEMYEKFTGDDPYKVPMRIFPAVHYTMGGLWVDYDQMTNIPGLFAAGE 391 (603)
T ss_pred CcCCCCCeEEEEcCCCcccccHHHHHHHhHHHHHHHHHhcCCCccCCeeeeecccceeCCCeeECCCCcccCCCEEECcc
Confidence 3569999999987 7889999999999988 69999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhcccc---ccccc-ccccccccCcccccccchhh-----hhcHHH
Q 006387 458 VACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSI---DLSAS-NWWTRTVVPKSLGCNVMHNI-----LRRTKE 528 (647)
Q Consensus 458 ~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 528 (647)
|+ +|+||+|||+||||++|+|||++||++|+++++.... +.... ..... ... ....++..+ ...+.+
T Consensus 392 ~~-~~~hg~nrl~~~sl~~~~v~g~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~ 467 (603)
T TIGR01811 392 CD-FSQHGANRLGANSLLSAIADGYFALPFTIPNYLGPELSSEDMPEDAPEFQA-ALA--EEQERFDRLLKMRGDENPYY 467 (603)
T ss_pred cc-cCcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhh-HHH--HHHHHHHHHhhccCCCCHHH
Confidence 97 7999999999999999999999999999998643210 00000 00000 000 000000100 124678
Q ss_pred HHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhh-cc-CcccccchHHHHHHHhHHHHHHHHHHHHHhcCcCc
Q 006387 529 VRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLF-EH-GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESR 606 (647)
Q Consensus 529 ~~~~l~~~m~~~~g~~r~~~~l~~al~~l~~l~~~~~~~~~-~~-~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESR 606 (647)
++++||++||+|+||+|++++|++||++|++|++++.+... .+ ....+.++++++|++|||++|+++++|||+|+|||
T Consensus 468 ~~~~lq~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~n~l~~a~~i~~aal~R~ESR 547 (603)
T TIGR01811 468 LHRELGEIMTENCGVSRNNEKLLKTDEKIRELRERFWKNIDIPGTTKESNQVLEFARRVADYLELAELMCLDALNRNESC 547 (603)
T ss_pred HHHHHHHHHHcCeeEEECHHHHHHHHHHHHHHHHHHHHhcccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 89999999999999999999999999999999988754221 11 11224577889999999999999999999999999
Q ss_pred ccccccCCC------CCccCCCCCeee
Q 006387 607 GLHYMVDFP------HVEENKRLPTII 627 (647)
Q Consensus 607 G~h~R~D~P------~~d~~~~~~~~~ 627 (647)
|+|||+||| ++||++|+++++
T Consensus 548 G~H~R~D~P~~~~~~~~~d~~~~~~~~ 574 (603)
T TIGR01811 548 GAHFRPEFPTPDGEAERNDEEFLKVTA 574 (603)
T ss_pred cccccccCCCccccccCChhhhheeEE
Confidence 999999999 777777777665
No 17
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=7.8e-90 Score=769.41 Aligned_cols=522 Identities=36% Similarity=0.556 Sum_probs=448.3
Q ss_pred cccCEEEECcchHHHHHHHHHHhcCCeEEEEecCCCCCCccccCCCeeeecC--CCCCHHHHHHHHHHhcccCCCHHHHH
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLC--PSDSVESHMQDTIVAGAYLCDDETVR 164 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G~V~llEk~~~~~G~t~~a~Ggi~~~~~--~~d~~~~~~~~~~~~g~~~~~~~~~~ 164 (647)
.++||||||+|+|||+||++|++..+|+||||....+|+|.+++||+++..+ +.|+++.|+.|+++.+.+++|+++++
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~~~VilleK~~~~~g~s~~a~Ggi~a~~~~~~~D~~e~~~~d~~~~g~~~~d~~~v~ 83 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPRARTAVLTKLYPTRSHTGAAQGGMCAALANVEEDNWEWHTFDTVKGGDYLVDQDAAE 83 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhCCCEEEEeCCCCCCCCchhhhcchhhcccCCCCCCHHHHHHHHHHhhcCCCCHHHHH
Confidence 4689999999999999999998644999999999888889999999987664 57899999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccc-------cceeeccCCchHHHHHHHHHHHHcCCCcEEEcceE
Q 006387 165 VVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSH-------HRIVHAADMTGREIERALLEAVVSDPNISVFEHHF 237 (647)
Q Consensus 165 ~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~-------~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~ 237 (647)
.+++++++.++||.++|++|.+..+|.+....+++|+. +|.++..+.+|..++..|.+.+.+ .||++++++.
T Consensus 84 ~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~i~~~L~~~~~~-~gv~i~~~~~ 162 (583)
T PRK08205 84 IMAKEAIDAVLDLEKMGLPFNRTPEGKIDQRRFGGHTRDHGKAPVRRACYAADRTGHMILQTLYQNCVK-HGVEFFNEFY 162 (583)
T ss_pred HHHHHHHHHHHHHHHcCCccccCCCCceeecccccccccccCCCccceeccCCCCHHHHHHHHHHHHHh-cCCEEEeCCE
Confidence 99999999999999999999988888877777888854 788888888999999999999987 5999999999
Q ss_pred EEEEEecCC---CCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchHHHHHHHcCCeecCcccc
Q 006387 238 AIDLLTTLD---GPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFV 314 (647)
Q Consensus 238 v~~l~~~~~---g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~ 314 (647)
+++|+++++ + +|+||++.+..+|+.+.|+||+|||||||++++|..+++++.+||||+.||+++||.+.+|||+
T Consensus 163 v~~Li~~~~~~~g---~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me~~ 239 (583)
T PRK08205 163 VLDLLLTETPSGP---VAAGVVAYELATGEIHVFHAKAVVFATGGSGRVYKTTSNAHTLTGDGMGIVFRKGLPLEDMEFH 239 (583)
T ss_pred EEEEEecCCccCC---cEEEEEEEEcCCCeEEEEEeCeEEECCCCCcccCCCcCCCCCCCcHHHHHHHHcCCCccCccce
Confidence 999998743 5 8999999877788888899999999999999999989999999999999999999999999999
Q ss_pred ccccccccCCCCCCCCCCCCCccceeeecccCCCceEEeCCCCcccccccc-ccccCchhHHHHHHHHHHHhcCC-----
Q 006387 315 QFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDE-RAELAPRDVVARSIDDQLKKRNE----- 388 (647)
Q Consensus 315 q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~-~~~l~~rd~~~~~i~~~~~~~~~----- 388 (647)
||||+.+... .+++++.++++|++++|.+|+||+++|++ ..++.+||++++++..++.++.+
T Consensus 240 q~~Pt~~~~~------------~~l~~e~~rg~g~ilvn~~GeRF~~~y~~~~~el~~rd~v~~ai~~e~~~~~g~~~~~ 307 (583)
T PRK08205 240 QFHPTGLAGL------------GILISEAARGEGGILRNAEGERFMERYAPTIKDLAPRDIVARSMVLEVREGRGAGPNK 307 (583)
T ss_pred EEecceecCC------------ceEeeecccCCceEEECCCCCCCccccCccccccccHHHHHHHHHHHHHhcCCCCCCC
Confidence 9999876421 45788899999999999999999999987 46899999999999999876422
Q ss_pred CeEEEecCCCChhHHHhhChhHHHHHHH-cCCCCCCCCeeeeeeeceecCceEECCCCC------cccCceeecccccCC
Q 006387 389 KYVLLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACT 461 (647)
Q Consensus 389 ~~v~ld~~~~~~~~l~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~------T~ipGLyAaGe~a~~ 461 (647)
.++|+|.++++.+.+..++|.+.+.++. .|+||.+++++|.|.+||++|||.||.+++ |+|||||||||++|+
T Consensus 308 ~~v~ld~~~~~~~~l~~~~~~~~~~~~~~~g~d~~~~~i~v~p~~h~t~GGi~id~~~~v~~~~~t~IpGLyAaGE~a~~ 387 (583)
T PRK08205 308 DYVYLDLTHLGEEVLEAKLPDITEFARTYLGVDPVKEPVPVYPTAHYAMGGIPTTVDGEVLRDNTTVVPGLYAAGECACV 387 (583)
T ss_pred CEEEEecccCChHHHHHHcchHHHHHHHHcCCCcCCCceEEEeeeeEECCCeeECCCceEecCCCCCcCCeeeccccccC
Confidence 4699999999999999999998888877 799999999999999999999999999998 689999999999977
Q ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHHhhhccc-cccccccc-ccccccCcccccccchhhhhcHHHHHHHHHHHHHh
Q 006387 462 GLHGANRLASNSLLEALVFARRAVQPSIDHKKSTS-IDLSASNW-WTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWR 539 (647)
Q Consensus 462 g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~ 539 (647)
|+||+|||+||+|++|+|||++||++|+++++... .+...... ....... .... ......+.+++++||++||+
T Consensus 388 g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~lq~~m~~ 463 (583)
T PRK08205 388 SVHGANRLGTNSLLDINVFGRRAGIAAAEYARGADFVDLPENPEAMVVEWVE-DLLS---EHGNERVADIRGELQQSMDN 463 (583)
T ss_pred CCCCCcCCchhhHHHHHHHHHHHHHHHHHHhhccCccCCchhhHHHHHHHHH-hhhc---cCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999875321 11110000 0000000 0000 00013467789999999999
Q ss_pred cCccccCHHHHHHHHHHHHHHHHHHHHhhhcc-CcccccchHHHHHHHhHHHHHHHHHHHHHhcCcCcccccccCCCCCc
Q 006387 540 YVGIVRSTTSLQTAEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVE 618 (647)
Q Consensus 540 ~~g~~r~~~~l~~al~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d 618 (647)
|+||+|++++|++||++|++|++++..+...+ ....++++++++|++|||++|+++++|||+|+||||+|||+|||++|
T Consensus 464 ~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~p~~~ 543 (583)
T PRK08205 464 NASVFRTEETLKQALTDIHALKERYKRITVQDKGKRFNTDLLEAIELGFLLDLAEVTVVGALNRKESRGGHAREDYPNRD 543 (583)
T ss_pred cCCEEECHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHhHHHHHHHHHHHHHhCcCCcccccCCCCCCcC
Confidence 99999999999999999999998876543221 12335788999999999999999999999999999999999999999
Q ss_pred cCCCCCeeec
Q 006387 619 ENKRLPTIIL 628 (647)
Q Consensus 619 ~~~~~~~~~~ 628 (647)
|++|++++++
T Consensus 544 d~~~~~~~~~ 553 (583)
T PRK08205 544 DVNYMKHTMA 553 (583)
T ss_pred ccccceEEEE
Confidence 9888887764
No 18
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=1.1e-89 Score=771.53 Aligned_cols=545 Identities=34% Similarity=0.462 Sum_probs=453.5
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecC---CCCCHHHHHHHHHHhcccCCCHH
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC---PSDSVESHMQDTIVAGAYLCDDE 161 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~---~~d~~~~~~~~~~~~g~~~~~~~ 161 (647)
..++||||||+|+||++||+.|++.| +|+||||....+|+|.+++||+.+..+ ..|+++.|+.|+++.+.+++|++
T Consensus 6 ~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~ds~~~~~~D~~~~g~~l~d~~ 85 (626)
T PRK07803 6 RHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQVHFRDTMRGGKFLNNWR 85 (626)
T ss_pred ceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCcceecCccceeeccCCCCCCCHHHHHHHHHHHhccCCcHH
Confidence 45799999999999999999999999 999999999888899999999987754 46899999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCC-------C-----
Q 006387 162 TVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDP-------N----- 229 (647)
Q Consensus 162 ~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~-------g----- 229 (647)
+++.+++++++.++||.++|++|++..+|.+....+++|+++|+++..+.+|..++..|.+.+.+.+ |
T Consensus 86 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~~~~~~~~~G~~~~~ 165 (626)
T PRK07803 86 MAELHAKEAPDRVWELETYGALFDRTKDGRISQRNFGGHTYPRLAHVGDRTGLELIRTLQQKIVSLQQEDHAELGDYEAR 165 (626)
T ss_pred HHHHHHHHhHHHHHHHHHCCCceEecCCCceeeeecCCcccCeEEecCCCcHHHHHHHHHHHHHhhhccccccccCCcCc
Confidence 9999999999999999999999998888888777889999999999988899999999999887642 5
Q ss_pred cEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchHHHHHHHcCCeec
Q 006387 230 ISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVIS 309 (647)
Q Consensus 230 v~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~ 309 (647)
|++++++.+++|+.+ ++ +|.||.+.+..+|+.+.|.||.|||||||++.+|+.++++..+||||+.||+++||.+.
T Consensus 166 v~i~~~~~v~~L~~~-~g---~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~~~~~~~~~~~tGdG~~mA~~aGa~l~ 241 (626)
T PRK07803 166 IKVFAECTITELLKD-GG---RIAGAFGYWRESGRFVLFEAPAVVLATGGIGKSFKVTSNSWEYTGDGHALALRAGATLI 241 (626)
T ss_pred eEEEeCCEEEEEEEE-CC---EEEEEEEEECCCCeEEEEEcCeEEECCCcccCCCCCcCCCCCcCcHHHHHHHHcCCcEe
Confidence 999999999999986 56 89999988777888888999999999999999999999999999999999999999999
Q ss_pred CccccccccccccCCCCCCCCCCCCCccceeeecccCCCceEEeCCCCccccccccc-----------------------
Q 006387 310 NMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER----------------------- 366 (647)
Q Consensus 310 ~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~----------------------- 366 (647)
+|||+||||+.+..+. . ...+++++++|++|++++|.+|+|||++|.+.
T Consensus 242 ~me~~q~~Pt~~~~~~-----~---~~~~li~e~~rg~g~ilvN~~G~RF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (626)
T PRK07803 242 NMEFVQFHPTGMVWPP-----S---VKGILVTEGVRGDGGVLKNSEGKRFMFDYIPDVFKGQYAETEEEADRWYKDNDNN 313 (626)
T ss_pred CCcceeecccccccCC-----C---cCceEEeeeccCCceEEECCCCCCccccccchhhhhhccccccchhhhhhccccc
Confidence 9999999998764211 0 12578899999999999999999999988754
Q ss_pred ---cccCchhHHHHHHHHHHHhcCC---CeEEEec-CCCChhHHHhhChhHHHHHHH-cCCCCCCCCeeeeeeeceecCc
Q 006387 367 ---AELAPRDVVARSIDDQLKKRNE---KYVLLDI-SHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGG 438 (647)
Q Consensus 367 ---~~l~~rd~~~~~i~~~~~~~~~---~~v~ld~-~~~~~~~l~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GG 438 (647)
.++.|||++++++..++.++.+ +.+|+|+ ++++++.+.+++|.++..+.+ .|+|+.++|+++.|++||+|||
T Consensus 314 ~~~~~l~prd~v~~ai~~e~~~g~g~~~~~v~ldla~~~~~~~l~~~~~~~~~~~~~~~g~d~~~~~i~v~P~~h~~~GG 393 (626)
T PRK07803 314 RRPPELLPRDEVARAINSEVKAGRGSPHGGVYLDIASRLPAEEIKRRLPSMYHQFKELADVDITKEPMEVGPTCHYVMGG 393 (626)
T ss_pred ccccccccHHHHHHHHHHHHHhcCCCCCCcEEEEccccCCHHHHHHHhHHHHHHHHHHcCCCCCCCceeeeeecceecCC
Confidence 5788999999999999987542 3499999 789989999999997777766 6999999999999999999999
Q ss_pred eEECCCC-CcccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhccccccc-ccccccccccCccccc
Q 006387 439 VRAGLQG-ETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLS-ASNWWTRTVVPKSLGC 516 (647)
Q Consensus 439 i~vD~~~-~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 516 (647)
|+||.++ +|+||||||||||+ +|+||+|||+||||++|+|||++||++|+++++....... ......... ......
T Consensus 394 i~vd~~~~~t~IpGLYAaGE~a-gg~hGanrl~gnsl~~a~v~Gr~Ag~~aa~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 471 (626)
T PRK07803 394 VEVDPDTGAATVPGLFAAGECA-GGMHGSNRLGGNSLSDLLVFGRRAGLGAADYVRGLGSRPAVSEEAVDAAA-REALAP 471 (626)
T ss_pred EEEcCCCCeeecCCeeEccccc-cccCcCccccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCChHHHHHHH-HHHHhh
Confidence 9999986 59999999999997 7999999999999999999999999999998753211000 000000000 000000
Q ss_pred ccchhhhhcHHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhhccCcccccchHHHHHHHhHHHHHHHHH
Q 006387 517 NVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVV 596 (647)
Q Consensus 517 ~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~ 596 (647)
.........+.+++++||++||+++||+|++++|++||++|++|++++..+........+.++.+++|++|||++|++++
T Consensus 472 ~~~~~~~~~~~~~~~~lq~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~ 551 (626)
T PRK07803 472 FERPAGAENPYTLHAELQQTMNDLVGIIRKEDEIEQALEKLAELKERAANVSVEGHRQYNPGWHLALDLRNMLLVSECVA 551 (626)
T ss_pred hhcccCCCCHHHHHHHHHHHHHhhceEEecHHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHhHHHHHHHHH
Confidence 00000013467789999999999999999999999999999999988766432211112234568899999999999999
Q ss_pred HHHHhcCcCcccccccCCCCCccCCCCCeeecC---CCccccccccccccC
Q 006387 597 SSALARHESRGLHYMVDFPHVEENKRLPTIILP---SLVNCTWSSRQLHKL 644 (647)
Q Consensus 597 ~aal~R~ESRG~h~R~D~P~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~ 644 (647)
+|||+|+||||+|||+|||++|++|++++++.. .+.+..-.+.|+..+
T Consensus 552 ~aal~R~ESRG~H~R~D~P~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 602 (626)
T PRK07803 552 RAALERTESRGGHTRDDHPGMDPEWRRINLVCRADPVGGHVTVTRQPQPPM 602 (626)
T ss_pred HHHHhCCCCcccEeCCCCCccChhhhceEEEEecCCCCCceEEEEccCCCc
Confidence 999999999999999999999987666555432 233544445544433
No 19
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=9.5e-90 Score=769.41 Aligned_cols=525 Identities=37% Similarity=0.545 Sum_probs=451.4
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC----CeEEEEecCCCCCCccccCCCeeeecCC--CCCHHHHHHHHHHhcccCCC
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG----TVAVITKAEPHESNTNYAQGGVSAVLCP--SDSVESHMQDTIVAGAYLCD 159 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G----~V~llEk~~~~~G~t~~a~Ggi~~~~~~--~d~~~~~~~~~~~~g~~~~~ 159 (647)
..++||||||||+|||+||+.|++.| +|+||||....+|++.+++||+++...+ .|+++.++.|+++.+.+++|
T Consensus 3 ~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g~~~~d 82 (577)
T PRK06069 3 VLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGSDFLAD 82 (577)
T ss_pred ceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHHhhcccCC
Confidence 45799999999999999999999985 8999999999899999999999877654 69999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEE
Q 006387 160 DETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAI 239 (647)
Q Consensus 160 ~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~ 239 (647)
+++++.+++++++.++||.++|++|.+.++|.+.....++|+++|+.+..+.+|..++..|.+.+.+..||++++++.++
T Consensus 83 ~~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~i~~~~~v~ 162 (577)
T PRK06069 83 QDAVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGGMSFPRTTFAADKTGFYIMHTLYSRALRFDNIHFYDEHFVT 162 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeeEecCCCcEeeeecCCcccceeeEcCCCchHHHHHHHHHHHHhcCCCEEEECCEEE
Confidence 99999999999999999999999999888898877788999999999999999999999999998765699999999999
Q ss_pred EEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchHHHHHHHcCCeecCccccccccc
Q 006387 240 DLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPT 319 (647)
Q Consensus 240 ~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~ 319 (647)
+|+.+ ++ +|+||.+.+..+|+...|+||.|||||||++++|..++++..++|||+.||+++||.+.||||+||||+
T Consensus 163 ~Li~~-~g---~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~~~~~~~~~~~tGdGi~mA~~aGa~l~~~e~~q~~pt 238 (577)
T PRK06069 163 SLIVE-NG---VFKGVTAIDLKRGEFKVFQAKAGIIATGGAGRLYGFTTYAHSVTGDGLAIAYRAGIPLKDMEFVQFHPT 238 (577)
T ss_pred EEEEE-CC---EEEEEEEEEcCCCeEEEEECCcEEEcCchhcccCCCcCCCCCcCcHHHHHHHHcCCccCCCcceeEeee
Confidence 99986 56 899999887777887789999999999999999998888889999999999999999999999999998
Q ss_pred cccCCCCCCCCCCCCCccceeeecccCCCceEEeCCCCccccccccc-cccCchhHHHHHHHHHHHhcCC-------CeE
Q 006387 320 ALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVARSIDDQLKKRNE-------KYV 391 (647)
Q Consensus 320 ~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~-~~l~~rd~~~~~i~~~~~~~~~-------~~v 391 (647)
.+... .++++++++++|++++|.+|+|||++|++. .++.+||++++++.+++.++++ .++
T Consensus 239 ~~~~~------------g~l~~e~~~g~g~~lvN~~GeRF~~~y~~~~~el~~rd~v~~ai~~e~~~g~g~~~~~g~~~v 306 (577)
T PRK06069 239 GLVPS------------GILITEAARGEGGYLINKEGERFMKRYAPQKMELAPRDVVSRAIMTEIMEGRGFKHESGLCYV 306 (577)
T ss_pred eeCCC------------CcEEEeeccCCCeEEECCCCCCcccccCccccccCCccHHHHHHHHHHHhcCCccCCCCceEE
Confidence 76531 457888999999999999999999999874 6899999999999998876432 358
Q ss_pred EEecCCCChhHHHhhChhHHHHHHH-cCCCCCCCCeeeeeeeceecCceEECCCCCcc------cCceeecccccCCCCC
Q 006387 392 LLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGETN------VRGLYVAGEVACTGLH 464 (647)
Q Consensus 392 ~ld~~~~~~~~l~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~------ipGLyAaGe~a~~g~~ 464 (647)
|+|.++.+.+.+.+++|++.+++.+ .|+|+.+++++|.|+.||++|||+||.++||+ |||||||||++|+|+|
T Consensus 307 ~ld~~~~~~~~~~~~~~~i~~~~~~~~g~D~~~~~i~v~p~~h~t~GGi~vd~~~~t~~~~g~~I~GLyAaGE~a~~g~h 386 (577)
T PRK06069 307 GLDLRHLGEEKINERLPLIREIAKKYAGIDPVTEPIPVRPAAHYTMGGIHTDVYGRVLTADGEWVRGLWAAGEAAAVSVH 386 (577)
T ss_pred EEecccCCHHHHHHHhhHHHHHHHHHcCCCCCCCceeeeeccceeCCCceECCCCcCcCCCCCEeCCeEecccccccccc
Confidence 9999999888888999999999988 79999999999999999999999999999998 9999999999977999
Q ss_pred CCCccchhhhHHHHHHHHHHHHHHHHhhhccc-ccccccccccccccCcccccccchhhhhcHHHHHHHHHHHHHhcCcc
Q 006387 465 GANRLASNSLLEALVFARRAVQPSIDHKKSTS-IDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGI 543 (647)
Q Consensus 465 Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~ 543 (647)
|+||++||+|++|+|||++||++|++++++.. .......... .............+....+.+++++||++||+|+||
T Consensus 387 Ganrlggnsl~~~~v~Gr~Ag~~aa~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi 465 (577)
T PRK06069 387 GANRLGSNSTAECLVWGRIAGEQAAEYALKRPAPSSPVEKLAE-KEEKRIFDKLLKKEGGEPSYEIRRELNDIMDKNFGI 465 (577)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHhhccCCCCCcchhhhh-HHHHHHHhhhhhccCCCcHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999875421 1100000000 000000000000001124678889999999999999
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHhhhccC-cccccchHHHHHHHhHHHHHHHHHHHHHhcCcCcccccccCCCCCccCCC
Q 006387 544 VRSTTSLQTAEWRIDELEAEWETYLFEHG-WEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKR 622 (647)
Q Consensus 544 ~r~~~~l~~al~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~ 622 (647)
+|++++|++||++|++|++++..+...+. ...++++++++|++||+++|+++++|||.|+||||+|||+|||++||++|
T Consensus 466 ~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~a~~~~~aal~R~ESRG~H~R~D~P~~~~~~~ 545 (577)
T PRK06069 466 FRDESGLAEALKKIKKLRERYKNVRIEDKSRIYNTDLKDALELDGMLDLAEVVAIGALLRTESRGAHYRLDYPKRDDENW 545 (577)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHhCCCCccceecCCCCccCchhh
Confidence 99999999999999999988765322111 12347889999999999999999999999999999999999999998777
Q ss_pred CCeee
Q 006387 623 LPTII 627 (647)
Q Consensus 623 ~~~~~ 627 (647)
.++++
T Consensus 546 ~~~~~ 550 (577)
T PRK06069 546 LKHTL 550 (577)
T ss_pred hceEE
Confidence 77654
No 20
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=2e-89 Score=765.67 Aligned_cols=522 Identities=34% Similarity=0.556 Sum_probs=445.7
Q ss_pred cccCEEEECcchHHHHHHHHHHhc--C-CeEEEEecCCCCCCccccCCCeeeec---CCCCCHHHHHHHHHHhcccCCCH
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEPHESNTNYAQGGVSAVL---CPSDSVESHMQDTIVAGAYLCDD 160 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~--G-~V~llEk~~~~~G~t~~a~Ggi~~~~---~~~d~~~~~~~~~~~~g~~~~~~ 160 (647)
.++||||||||+|||+||+.|++. | +|+||||....+|++.+++||+.+.. .+.|+++.|+.|+++.+.+++|+
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~l~d~ 81 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDYLADQ 81 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCCCCCH
Confidence 468999999999999999999986 5 89999999888888989999987655 35689999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEE
Q 006387 161 ETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAID 240 (647)
Q Consensus 161 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~ 240 (647)
++++.+++++++.++||+++|++|.+.++|.+....+++|+++|+++..+.+|..++..|.+.+++ .||++++++.+++
T Consensus 82 ~~v~~l~~~a~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~-~gi~i~~~t~v~~ 160 (575)
T PRK05945 82 DAVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLRR-YGVTIYDEWYVMR 160 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceEECCCCcEeeccccccccCeeEecCCCChHHHHHHHHHHHhh-CCCEEEeCcEEEE
Confidence 999999999999999999999999998888877778899999999999999999999999999987 5999999999999
Q ss_pred EEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchHHHHHHHcCCeecCcccccccccc
Q 006387 241 LLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTA 320 (647)
Q Consensus 241 l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~ 320 (647)
|+.+ ++ +|.|+++.+..+|+...|+||+|||||||++++|..++++..++|||+.||+++||.+.+|||+||||+.
T Consensus 161 L~~~-~g---~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdG~~mA~~aGa~l~~me~~qf~pt~ 236 (575)
T PRK05945 161 LILE-DN---QAKGVVMYHIADGRLEVVRAKAVMFATGGYGRVFNTTSNDYASTGDGLAMTAIAGLPLEDMEFVQFHPTG 236 (575)
T ss_pred EEEE-CC---EEEEEEEEEcCCCeEEEEECCEEEECCCCCcCCCCCCCCCCCCccHHHHHHHHcCCCccCCcceEEeeee
Confidence 9986 56 8999998877778877899999999999999999988899999999999999999999999999999987
Q ss_pred ccCCCCCCCCCCCCCccceeeecccCCCceEEeCCCCccccccccc-cccCchhHHHHHHHHHHHhcCC---------Ce
Q 006387 321 LADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVARSIDDQLKKRNE---------KY 390 (647)
Q Consensus 321 ~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~-~~l~~rd~~~~~i~~~~~~~~~---------~~ 390 (647)
+... .++++++++++|++++|.+|+|||++|++. .++++||++++++..++.++.+ ..
T Consensus 237 ~~~~------------~~l~~~~~rg~g~~lvn~~G~RF~~~y~~~~~el~~rd~v~~ai~~~~~~g~g~~~~~~~~~~~ 304 (575)
T PRK05945 237 LYPV------------GVLISEAVRGEGAYLINSEGDRFMADYAPSRMELAPRDITSRAITLEIRAGRGINPDGSAGGPF 304 (575)
T ss_pred ecCC------------CeEEeeecccCceEEECCCCCCcccccCccccccCchhHHHHHHHHHHHhcCCCCCcccCCCCE
Confidence 6421 457888899999999999999999999884 5899999999999999876422 35
Q ss_pred EEEecCCCChhHHHhhChhHHHHHH-HcCCCCCCCCeeeeeeeceecCceEECCCCCc------ccCceeecccccCCCC
Q 006387 391 VLLDISHKPTEKILSHFPNIAAECL-KYGLDITSQPIPVVPAAHYMCGGVRAGLQGET------NVRGLYVAGEVACTGL 463 (647)
Q Consensus 391 v~ld~~~~~~~~l~~~~~~~~~~~~-~~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T------~ipGLyAaGe~a~~g~ 463 (647)
+|+|.++.+.+.+.+++|.+.+.+. ..|+|+.++|++|.|..||+||||+||.+++| +|||||||||++|+|+
T Consensus 305 v~ld~~~~~~~~~~~~~~~~~~~l~~~~gid~~~~~i~v~p~~h~t~GGi~vd~~~~~~~~~~t~I~GLyAaGE~a~~g~ 384 (575)
T PRK05945 305 VYLDLRHMGKEKIMSRVPFCWEEAHRLVGVDAVTEPMPVRPTVHYCMGGIPVNTDGRVRRSADGLVEGFFAAGECACVSV 384 (575)
T ss_pred EEEECCCCCHHHHHHHhHHHHHHHHHHhCcCCCCceEEeeccceecCCCeeECCCceeccCCCCccCCeEeeeccccccc
Confidence 9999999988878888886555544 57999999999999999999999999999986 7999999999998899
Q ss_pred CCCCccchhhhHHHHHHHHHHHHHHHHhhhcccc-cccccccccccccCcccccccchhhhhcHHHHHHHHHHHHHhcCc
Q 006387 464 HGANRLASNSLLEALVFARRAVQPSIDHKKSTSI-DLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVG 542 (647)
Q Consensus 464 ~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g 542 (647)
||+|||+||+|++|+|||++||++|+++++.... +.... ....... ..............+.+++++||++||+|+|
T Consensus 385 hGanrlggnsl~~~~v~G~~Ag~~aa~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g 462 (575)
T PRK05945 385 HGANRLGSNSLLECVVYGRRTGAAIAEYVQGRKLPEVDEQ-RYLKEAK-QRIQALLDQSGTYRINQLRQQFQDCMTDHCG 462 (575)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHhhccCCCCcchh-hHHHHHH-HHHhhhhccccccChHHHHHHHHHHHHcCcc
Confidence 9999999999999999999999999998753211 11000 0000000 0000000000112467889999999999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhhcc-CcccccchHHHHHHHhHHHHHHHHHHHHHhcCcCcccccccCCCCCccCC
Q 006387 543 IVRSTTSLQTAEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENK 621 (647)
Q Consensus 543 ~~r~~~~l~~al~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~ 621 (647)
++|++++|++|+++|++|++++..+...+ ....++++++++|++|||++|+++++|||+|+||||+|||+|||++||++
T Consensus 463 i~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~d~~ 542 (575)
T PRK05945 463 VFRTEEIMQEGLEKIQQLKQQYEQIYLDDKGKCWNTELIEALELRSLMVVGEIILTSALNRQESRGAHSREDYPQRDDQN 542 (575)
T ss_pred EEECHHHHHHHHHHHHHHHHHHHhccccccccccChhHHHHHHHHhHHHHHHHHHHHHHhCCCcccccccCCCCcCCchh
Confidence 99999999999999999998877643222 12235788999999999999999999999999999999999999999887
Q ss_pred CCCeee
Q 006387 622 RLPTII 627 (647)
Q Consensus 622 ~~~~~~ 627 (647)
|+++++
T Consensus 543 ~~~~~~ 548 (575)
T PRK05945 543 FLKHTL 548 (575)
T ss_pred hhceEE
Confidence 877765
No 21
>PRK07804 L-aspartate oxidase; Provisional
Probab=100.00 E-value=4.6e-88 Score=748.68 Aligned_cols=506 Identities=45% Similarity=0.656 Sum_probs=439.9
Q ss_pred CccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHH
Q 006387 85 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETV 163 (647)
Q Consensus 85 ~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~ 163 (647)
.+.++||||||+|+|||+||+.|++.| +|+||||....+|+|.+++||+++..++.|+++.|+.|+++.+.+++|++++
T Consensus 13 ~~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v 92 (541)
T PRK07804 13 WRDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAV 92 (541)
T ss_pred cccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHH
Confidence 356799999999999999999999999 9999999999889999999999988888899999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeec-cCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEE
Q 006387 164 RVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHA-ADMTGREIERALLEAVVSDPNISVFEHHFAIDLL 242 (647)
Q Consensus 164 ~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~-~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~ 242 (647)
+.+++++++.++||.++|++|.+..+|.+.....++|+.+|+++. .+.+|..+...|.+.+++. +|+++.++.+++|+
T Consensus 93 ~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~-gV~i~~~~~v~~Li 171 (541)
T PRK07804 93 RSLVAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRAD-PLDIREHALALDLL 171 (541)
T ss_pred HHHHHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhC-CCEEEECeEeeeeE
Confidence 999999999999999999999988889888888899999998887 4678999999999999874 89999999999999
Q ss_pred ecCCCCCCeEEEEEEEec---CCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchHHHHHHHcCCeecCccccccccc
Q 006387 243 TTLDGPDAVCHGVDTLNV---ETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPT 319 (647)
Q Consensus 243 ~~~~g~~~~v~Gv~~~~~---~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~ 319 (647)
.++++ +|+|+.+.+. .++....|.||.||+||||++.+|..++++..+||||+.||+++|+.+.+|||+||||+
T Consensus 172 ~~~~g---~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~~~~~~~~~~~~tGdG~~mA~~aGa~l~~me~~q~~pt 248 (541)
T PRK07804 172 TDGTG---AVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQLYAATTNPAGSTGDGVALALRAGAAVSDLEFVQFHPT 248 (541)
T ss_pred EcCCC---eEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCCCCCCccCCCCcchHHHHHHHHcCCCCcCCcceeEecc
Confidence 87555 8999988742 12334679999999999999999999999999999999999999999999999999998
Q ss_pred cccCCCCCCCCCCCCCccceeeecccCCCceEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCCeEEEecCCCC
Q 006387 320 ALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKP 399 (647)
Q Consensus 320 ~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~l~~rd~~~~~i~~~~~~~~~~~v~ld~~~~~ 399 (647)
.+..... .....++++++++++|++++|.+|+|||++|++..|+++||++++++..++.+.+..++|+|.++
T Consensus 249 ~~~~~~~------~~~~~~l~~~~~r~~g~~lvn~~G~RF~~~~~~~~E~a~rd~v~~ai~~~~~~~g~~~v~lD~~~-- 320 (541)
T PRK07804 249 VLFLGPA------AGGQRPLISEAVRGEGAILVDAQGNRFMAGVHPLADLAPRDVVAKAIDRRMKATGDDHVYLDARG-- 320 (541)
T ss_pred eecCCcc------cccccceechhhcCCceEEECCCCCCCccccCcccccCcHHHHHHHHHHHHHhcCCCEEEEeCcc--
Confidence 7753110 01114678889999999999999999999999988999999999999999876555689999884
Q ss_pred hhHHHhhChhHHHHHHHcCCCCCCCCeeeeeeeceecCceEECCCCCcccCceeecccccCCCCCCCCccchhhhHHHHH
Q 006387 400 TEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALV 479 (647)
Q Consensus 400 ~~~l~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v 479 (647)
.+.+..++|++.+++++.|+|+.+++++|.|..|+++|||+||++++|+|||||||||++|+|+||+||++|++++++++
T Consensus 321 ~~~~~~~~p~i~~~~~~~gid~~~~~i~v~p~~h~t~GGi~vd~~~~t~i~GLyAaGe~~~~g~hGa~~l~~~sl~~~~v 400 (541)
T PRK07804 321 IEGFARRFPTITASCRAAGIDPVRQPIPVAPAAHYSCGGVVTDVYGRTSVPGLYAAGEVACTGVHGANRLASNSLLEGLV 400 (541)
T ss_pred HHHHHHHhhHHHHHHHHhCcCCcCCeEEEEHHHhhcCCCEEECCCCcccCCCeEEcccccccccCCCcccHHHHHHHHHH
Confidence 46777899999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccccccccccccccccCcccccccchhhhhcHHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHH
Q 006387 480 FARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDE 559 (647)
Q Consensus 480 ~G~~Ag~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~al~~l~~ 559 (647)
||++||++|++++...... . . . . .+ .......+.+++++||++||+++||+|++++|++||.+|++
T Consensus 401 ~G~~ag~~aa~~~~~~~~~-~-~---~-~-~~-------~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l~~ 466 (541)
T PRK07804 401 VGERAGAAAAAHAAAAGRP-R-A---T-P-AV-------GPEPGLLPALDRAELQRAMTRGAGVLRSAAGLARAADRLAA 466 (541)
T ss_pred HHHHHHHHHHHhhcccCcc-c-c---c-h-hh-------cccccCchHHHHHHHHHHHHhcCCeEEcHHHHHHHHHHHHH
Confidence 9999999998875322110 0 0 0 0 00 00111346778899999999999999999999999999988
Q ss_pred HHHHHHHhhhccCcccccchHHHHHHHhHHHHHHHHHHHHHhcCcCcccccccCCCCCccCCCCCeeec
Q 006387 560 LEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTIIL 628 (647)
Q Consensus 560 l~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~~~~~~ 628 (647)
+.... .+++...+|++|||++|+++++|||.||||||+|||+|||++||+ |.+++++
T Consensus 467 ~~~~~-----------~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~~~-~~~~~~~ 523 (541)
T PRK07804 467 GAPAR-----------VVPGRADWEDTNLTLVARALVAAALARTESRGCHWREDFPDTDDE-WARSIVV 523 (541)
T ss_pred HHhhc-----------ccchhHHHHHHhHHHHHHHHHHHHHhcCCCcccccCCCCCccChh-hhceEEE
Confidence 64311 124467789999999999999999999999999999999999995 5565553
No 22
>PRK07512 L-aspartate oxidase; Provisional
Probab=100.00 E-value=6.6e-88 Score=742.78 Aligned_cols=486 Identities=41% Similarity=0.583 Sum_probs=428.6
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCC-CCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHH
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP-HESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETV 163 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~-~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~ 163 (647)
+.++||||||+|.|||+||+.|+ + +|+||||... .+|+|.+++||+++..++.|+++.|++|+++.+.+++|++++
T Consensus 7 ~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~~~gg~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~g~~d~~~v 84 (513)
T PRK07512 7 ILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPLGEGASSAWAQGGIAAALGPDDSPALHAADTLAAGAGLCDPAVA 84 (513)
T ss_pred CCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCCCCCcchHHhhhccccccCCCCCHHHHHHHHHHhhCCCCCHHHH
Confidence 56799999999999999999997 6 9999999987 567888999999988888899999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeec-cCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEE
Q 006387 164 RVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHA-ADMTGREIERALLEAVVSDPNISVFEHHFAIDLL 242 (647)
Q Consensus 164 ~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~-~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~ 242 (647)
+.+++++++.++||+++|++|.+..+|.+.....++|+.+|+++. .+.+|..++..|.+.+.+..||++++++.+++|+
T Consensus 85 ~~~~~~s~~~i~wL~~~Gv~f~~~~~G~~~~~~~~~~~~~r~~~~~g~~~G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li 164 (513)
T PRK07512 85 ALITAEAPAAIEDLLRLGVPFDRDADGRLALGLEAAHSRRRIVHVGGDGAGAAIMRALIAAVRATPSITVLEGAEARRLL 164 (513)
T ss_pred HHHHHHHHHHHHHHHHhCCccccCCCCccccccccCccCCcEEEcCCCCCHHHHHHHHHHHHHhCCCCEEEECcChhhee
Confidence 999999999999999999999988888877777899999999987 4678999999999999765699999999999998
Q ss_pred ecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchHHHHHHHcCCeecCcccccccccccc
Q 006387 243 TTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALA 322 (647)
Q Consensus 243 ~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~ 322 (647)
.+ ++ +|+||.+.+ +++.+.|.||.|||||||++++|..+++++.+||||+.||+++||.+.+|||+||||+.+.
T Consensus 165 ~~-~g---~v~Gv~~~~--~~~~~~i~Ak~VVLATGG~~~~~~~~~~~~~~tGDGi~mA~~aGA~l~~me~~q~~Pt~~~ 238 (513)
T PRK07512 165 VD-DG---AVAGVLAAT--AGGPVVLPARAVVLATGGIGGLYAVTTNPAGAFGQGLALAARAGAVIADPEFVQFHPTAID 238 (513)
T ss_pred ec-CC---EEEEEEEEe--CCeEEEEECCEEEEcCCCCcCCCCCCCCCCCCchHHHHHHHHcCCcEeCCcceEEEeeeec
Confidence 76 55 899998875 3445579999999999999999999999999999999999999999999999999998875
Q ss_pred CCCCCCCCCCCCCccceeeecccCCCceEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCCeEEEecCCCChhH
Q 006387 323 DEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEK 402 (647)
Q Consensus 323 ~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~l~~rd~~~~~i~~~~~~~~~~~v~ld~~~~~~~~ 402 (647)
..+. ..++++++++++|++++|.+|+|||++|++..|+.+||++++++.+++.++ ..+|+|.++.+.+.
T Consensus 239 ~~~~---------~~~l~~~~~rg~g~~lvn~~G~RF~~~~~~~~e~~~rd~v~~ai~~~~~~g--~~v~ld~~~~~~~~ 307 (513)
T PRK07512 239 IGRD---------PAPLATEALRGEGAILINEDGERFMADIHPGAELAPRDVVARAVFAEIAAG--RGAFLDARAALGAH 307 (513)
T ss_pred CCCC---------CcceeehhhhCCceEEECCCCCChhhhcCCccccCcHHHHHHHHHHHHhcC--CEEEEeccccchHH
Confidence 3211 145788899999999999999999999998889999999999999998764 46899999888778
Q ss_pred HHhhChhHHHHHHHcCCCCCCCCeeeeeeeceecCceEECCCCCcccCceeecccccCCCCCCCCccchhhhHHHHHHHH
Q 006387 403 ILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFAR 482 (647)
Q Consensus 403 l~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~ 482 (647)
+.+++|++.+++.+.|+|+.+++++|.|..||++|||+||.+++|+||||||||||+|+|+||+||++||||++|+|||+
T Consensus 308 ~~~~~~~i~~l~~~~gid~~~~~i~v~p~~h~t~GGi~vd~~~~t~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G~ 387 (513)
T PRK07512 308 FATRFPTVYAACRSAGIDPARQPIPVAPAAHYHMGGIAVDADGRSSLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAA 387 (513)
T ss_pred HHHHhhHHHHHHHHhCcCCCCCceEEecccCEEcCCEEECCCCccccCCEEecccccccCCCcccchHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred HHHHHHHHhhhcccccccccccccccccCcccccccchhhhhcHHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHH
Q 006387 483 RAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEA 562 (647)
Q Consensus 483 ~Ag~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~al~~l~~l~~ 562 (647)
+||++|+++...... +..+.. . . ..+.+..++||++||+|+||+|++++|+++|.+|++|++
T Consensus 388 ~ag~~aa~~~~~~~~----------~~~~~~--~----~--~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l~~l~~ 449 (513)
T PRK07512 388 RAAEDIAGTPAAAAA----------PLSAAA--A----P--ALDPADLALLRPIMSRHVGVLRDADGLRRAIAALLPLEA 449 (513)
T ss_pred HHHHHHHHHhhcccc----------cccccc--c----c--cccHHHHHHHHHHHHhhccEEEcHHHHHHHHHHHHHHHH
Confidence 999999887533210 000000 0 0 112345578999999999999999999999999999976
Q ss_pred HHHHhhhccCcccccchHHHHHHHhHHHHHHHHHHHHHhcCcCcccccccCCCCCccCCCCCeee
Q 006387 563 EWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTII 627 (647)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~~~~~ 627 (647)
+.. +++||+++|+++++|||.|+||||+|||+|||++||+ |+++++
T Consensus 450 ~~~------------------~~~~~~~~a~~~~~aal~R~ESRG~H~R~D~p~~~~~-~~~~~~ 495 (513)
T PRK07512 450 GAG------------------PAADPATVALLIAVAALAREESRGAHFRTDFPLTAPA-ARRTRL 495 (513)
T ss_pred HHH------------------HHHhHHHHHHHHHHHHHhCCCCccceeCCcCCccchh-hcceEE
Confidence 421 3579999999999999999999999999999999988 455554
No 23
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=3.3e-87 Score=744.44 Aligned_cols=520 Identities=38% Similarity=0.588 Sum_probs=446.6
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCC-CCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHH
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP-HESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETV 163 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~-~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~ 163 (647)
..++||||||+|.||++||+.| +.| +|+||||... .+|++.+++|++++..++.|+++.|+.|+++.+.+++|++++
T Consensus 5 ~~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv 83 (543)
T PRK06263 5 IMITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLV 83 (543)
T ss_pred eeccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHHH
Confidence 4679999999999999999999 889 9999999876 567888899999888888899999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEe
Q 006387 164 RVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLT 243 (647)
Q Consensus 164 ~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~ 243 (647)
+.+++++++.++||+++|++|.++.+|.+.....++|+++|.++..+.+|..+...|.+.+.+ .||++++++.+++|+.
T Consensus 84 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~-~gv~i~~~t~v~~Li~ 162 (543)
T PRK06263 84 EILVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIK-ERIKILEEVMAIKLIV 162 (543)
T ss_pred HHHHHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhc-CCCEEEeCeEeeeeEE
Confidence 999999999999999999999988888777677889999999998888899999999998887 6999999999999998
Q ss_pred cCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchHHHHHHHcCCeecCccccccccccccC
Q 006387 244 TLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALAD 323 (647)
Q Consensus 244 ~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~ 323 (647)
++++ +|+||.+.+..+|+.+.|+||.|||||||++.+|+.+++++.+||||+.|++++||.+.+|||+||||+.+..
T Consensus 163 ~~~~---~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~~~~~~~~~~~~tGdG~~ma~~aGa~l~~me~~q~~p~~~~~ 239 (543)
T PRK06263 163 DENR---EVIGAIFLDLRNGEIFPIYAKATILATGGAGQLYPITSNPIQKTGDGFAIAYRAGAELIDMEMVQFHPTGMVY 239 (543)
T ss_pred eCCc---EEEEEEEEECCCCcEEEEEcCcEEECCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCCCcCccceeEecceecc
Confidence 7443 6999998876678878899999999999999999999999999999999999999999999999999987642
Q ss_pred CCCCCCCCCCCCccceeeecccCCCceEEeCCCCcccccccc-ccccCchhHHHHHHHHHHHhcCC---CeEEEecCCCC
Q 006387 324 EGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDE-RAELAPRDVVARSIDDQLKKRNE---KYVLLDISHKP 399 (647)
Q Consensus 324 ~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~-~~~l~~rd~~~~~i~~~~~~~~~---~~v~ld~~~~~ 399 (647)
+.. ...++++++++++|++++|.+|+||+++|++ ..++.+|+++++++.+++..+++ ..+|+|.++++
T Consensus 240 ~~~--------~~~~~~~~~~~~~g~~lvn~~G~RF~~~y~~~~~e~~~~~~~~~ai~~~~~~g~g~~~~~~~ld~~~~~ 311 (543)
T PRK06263 240 PYS--------GRGILVTEAVRGEGGILYNKNGERFMKRYDPERMELSTRDVVARAIYTEIQEGRGTNHGGVYLDVTHLP 311 (543)
T ss_pred CCC--------CCceEEeeeecCCccEEECCCCCCcccccCcccccccchhHHHHHHHHHHHhcCCCCCceEEEECCCCC
Confidence 210 1145678888899999999999999999988 46899999999999998866432 34999999999
Q ss_pred hhHHHhhChhHHHHHHHcCCCCCCCCeeeeeeeceecCceEECCCCCcccCceeecccccCCCCCCCCccchhhhHHHHH
Q 006387 400 TEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALV 479 (647)
Q Consensus 400 ~~~l~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v 479 (647)
.+.+.+.+|.+.+.+.+.|+|+.++|+++.|..|+++|||+||+++||+|||||||||++ +|+||+||++|++|++|+|
T Consensus 312 ~~~l~~~~~~~~~~~~~~G~D~~~~pi~v~p~~~~t~GGi~vd~~~~t~IpGLyAaGE~~-gg~hG~~rlgG~sl~~a~v 390 (543)
T PRK06263 312 DEVIEEKLETMLEQFLDVGVDIRKEPMEVAPTAHHFMGGIRINEDCETNIPGLFACGEVA-GGVHGANRLGGNALADTQV 390 (543)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCEEEeccccEecCCEEECCCCcccCCCeEeccccc-cCCCCCCccchhhhhhhHH
Confidence 888888898877777788999999999999999999999999999999999999999997 7999999999999999999
Q ss_pred HHHHHHHHHHHhhhccccc-cccc-ccccccccCcccccccchhhhhcHHHHHHHHHHHHHhcCccccCHHHHHHHHHHH
Q 006387 480 FARRAVQPSIDHKKSTSID-LSAS-NWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRI 557 (647)
Q Consensus 480 ~G~~Ag~~a~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~al~~l 557 (647)
||++||++|+++++..... .... ......... ... . ......+.+++++||++||+|+|++|++++|++||.+|
T Consensus 391 ~Gr~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~-~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l 466 (543)
T PRK06263 391 FGAIAGKSAAKNAENNEFKKVNRSVEEDIARIKS-EIK--F-LNGSINPYDLIDELKKTMWDYVSIVRNEKGLKKALEEI 466 (543)
T ss_pred HHHHHHHHHHHHhhhcCCCcchhhhhhhHHHHHH-Hhh--h-cccCCCHHHHHHHHHHHHHhhCcEEEcHHHHHHHHHHH
Confidence 9999999999987542210 0000 000000000 000 0 01123578899999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCcccccchHHHHHHHhHHHHHHHHHHHHHhcCcCcccccccCCCCCccCCCCCeeec
Q 006387 558 DELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTIIL 628 (647)
Q Consensus 558 ~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~~~~~~ 628 (647)
++|++++..+. ..+.+++++++|++||+++|+++++|||+|+||||+|||.|||++|| +|.+++++
T Consensus 467 ~~l~~~~~~~~----~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~~~-~~~~~~~~ 532 (543)
T PRK06263 467 NELKEKLKDLK----VNGIVDFNKALELENMILVAELVIKSALLRKESRGAHYREDYPETND-EWFGNIIL 532 (543)
T ss_pred HHHHHHHHhcc----cccchhhHHHHHHHHHHHHHHHHHHHHHhCCCCcceeccCCCCccCh-hhcCeEEe
Confidence 99998876532 23467889999999999999999999999999999999999999999 56666654
No 24
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=100.00 E-value=4.9e-87 Score=748.62 Aligned_cols=522 Identities=40% Similarity=0.581 Sum_probs=446.2
Q ss_pred CEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecC---CCCCHHHHHHHHHHhcccCCCHHHHHH
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC---PSDSVESHMQDTIVAGAYLCDDETVRV 165 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~---~~d~~~~~~~~~~~~g~~~~~~~~~~~ 165 (647)
||||||+|+||++||+.|++.| +|+||||....+|++.+++||+.+... +.|+++.++.|+++.+.+++|+++++.
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d~~~v~~ 80 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAVEY 80 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCCHHHHHH
Confidence 8999999999999999999999 999999999888889899999887653 568899999999999999999999999
Q ss_pred HHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC
Q 006387 166 VCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTL 245 (647)
Q Consensus 166 ~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~ 245 (647)
+++++++.++||+++|++|...++|.+....+++|+.+|..+..+.+|..+...|.+.+.+. ||++++++.+++|+.+
T Consensus 81 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~-gv~i~~~~~v~~L~~~- 158 (566)
T TIGR01812 81 MCQEAPKAILELEHWGVPFSRTPDGRIAQRPFGGHSKDRTCYAADKTGHALLHTLYEQCLKL-GVSFFNEYFALDLIHD- 158 (566)
T ss_pred HHHHHHHHHHHHHHcCCcceecCCCcEeeccccccccCeeEECCCCCHHHHHHHHHHHHHHc-CCEEEeccEEEEEEEe-
Confidence 99999999999999999999888887766778999999999988889999999999998875 9999999999999986
Q ss_pred CCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchHHHHHHHcCCeecCccccccccccccCCC
Q 006387 246 DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEG 325 (647)
Q Consensus 246 ~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g 325 (647)
++ +|+||.+.+..+|+...|+||.|||||||++.+|..+++++.++|||+.|++++||.+.+|||+||||+.+...
T Consensus 159 ~g---~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~~~~~~~~~~~~tGdGi~ma~~aGa~l~~~e~~q~~p~~~~~~- 234 (566)
T TIGR01812 159 DG---RVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRIYKTTTNAHINTGDGMAMALRAGVPLKDMEFVQFHPTGLYPS- 234 (566)
T ss_pred CC---EEEEEEEEECCCCcEEEEECCeEEECCCcccCCCCCCCCCCCcccHHHHHHHHcCCCccCCcceEEeeeeeCCC-
Confidence 56 89999988766787778999999999999999998888999999999999999999999999999999876421
Q ss_pred CCCCCCCCCCccceeeecccCCCceEEeCCCCcccccccc-ccccCchhHHHHHHHHHHHhcCC------CeEEEecCCC
Q 006387 326 LPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDE-RAELAPRDVVARSIDDQLKKRNE------KYVLLDISHK 398 (647)
Q Consensus 326 ~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~-~~~l~~rd~~~~~i~~~~~~~~~------~~v~ld~~~~ 398 (647)
.+++++.++++|++++|.+|+|||++|++ ..++.+||++++++.+++.++.+ .++|+|.++.
T Consensus 235 -----------~~~~~e~~~~~g~~lvn~~G~RF~~~~~~~~~e~~~r~~~~~ai~~~~~~~~g~~~~~~~~v~~d~~~~ 303 (566)
T TIGR01812 235 -----------GILITEGCRGEGGYLVNKNGERFMERYAPEKMELAPRDVVSRAMWTEIREGRGVGSPPGDYVYLDLRHL 303 (566)
T ss_pred -----------CcEEeccccCCceEEECCCCCCCCcccCccccccCchhHHHHHHHHHHHhcCCCCCCCCCEEEEECCCC
Confidence 35678889999999999999999999987 46899999999999999875432 4699999999
Q ss_pred ChhHHHhhChhHHHHHHH-cCCCCCCCCeeeeeeeceecCceEECCCCC----cccCceeecccccCCCCCCCCccchhh
Q 006387 399 PTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGE----TNVRGLYVAGEVACTGLHGANRLASNS 473 (647)
Q Consensus 399 ~~~~l~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~----T~ipGLyAaGe~a~~g~~Ga~rl~g~s 473 (647)
+.+.+..++|++.+++.+ .|+|+.++++++.|..||++|||+||.++| |+|||||||||++|+|+||+|||+|++
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~g~d~~~~~i~v~p~~h~t~GGi~id~~~~v~~~t~I~GLyAaGe~a~~g~hGa~rl~g~s 383 (566)
T TIGR01812 304 GEEKIEERLPQIRELAKYFAGVDPVKEPIPVRPTAHYSMGGIPTDYTGRVICETIVKGLFAAGECACVSVHGANRLGGNS 383 (566)
T ss_pred CHHHHHHHchHHHHHHHHHcCCCCCCCceeeehhhcccCCCeEECcCcccccCcccCCeeecccccccCcCcccccchhh
Confidence 888888899999999988 599999999999999999999999999999 999999999999978999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhcccccccccccccccccCcccccccchhhhhcHHHHHHHHHHHHHhcCccccCHHHHHHH
Q 006387 474 LLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTA 553 (647)
Q Consensus 474 l~~a~v~G~~Ag~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~a 553 (647)
|++|+|||++||++|+++++....+...........................+.+++++||++||+|+|++|++++|+++
T Consensus 384 l~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lq~~m~~~~gi~R~~~~L~~a 463 (566)
T TIGR01812 384 LLELVVFGRIAGEAAAEYAAKTGNPAADIEEEAVKAEEALIDLLVESNGGERVAKIREELGDTMDDNVGIFRTEELLKKA 463 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHhccceecHHHHHHH
Confidence 99999999999999999875421110000000000000000000000011346778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhc-cCcccccchHHHHHHHhHHHHHHHHHHHHHhcCcCcccccccCCCCCccCCCCCeeec
Q 006387 554 EWRIDELEAEWETYLFE-HGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTIIL 628 (647)
Q Consensus 554 l~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~~~~~~ 628 (647)
+++|++|++++..+... .....++++++++|++||+++|+++++|||+|+||||+|||+|||++||++|.++++.
T Consensus 464 l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~~~~~~~~~~~ 539 (566)
T TIGR01812 464 VDEIEELRERYKNVRINDKSKVFNTDLLEALELGNMLDLAEVVAAGALNRKESRGAHAREDYPERDDENWLKHTLA 539 (566)
T ss_pred HHHHHHHHHHHHhhcccCcccccCHhHHHHHHHHHHHHHHHHHHHHHHhccCCcccccCCCCCCcCcccccceEEE
Confidence 99999998877653211 1122356789999999999999999999999999999999999999999878877653
No 25
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=3.6e-87 Score=744.35 Aligned_cols=509 Identities=36% Similarity=0.536 Sum_probs=437.0
Q ss_pred HHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeec---CCCCCHHHHHHHHHHhcccCCCHHHHHHHHHHhHHHHHH
Q 006387 101 LCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL---CPSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRE 176 (647)
Q Consensus 101 l~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~---~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~ 176 (647)
|+||++|++.| +|+||||....+|+|.+++|||++.. .+.|+++.|++|+++.+.+++|+++++.+++++++.++|
T Consensus 1 l~AAl~aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v~~l~~~a~~~i~~ 80 (570)
T PRK05675 1 MRAALQLAQGGHKTAVVTKVFPTRSHTVSAQGGITCAIASADPNDDWRWHMYDTVKGSDYIGDQDAIEYMCSVGPEAVFE 80 (570)
T ss_pred ChhHHhHHhcCCcEEEEEcCCCCCchHHHhhhhhhcccCCCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 57999999999 99999999999999999999998765 467999999999999999999999999999999999999
Q ss_pred HHHcCCCcccCCCCCccccccCCccc--------cceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCC
Q 006387 177 LIAIGASFDRGEDGNLHLAREGGHSH--------HRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGP 248 (647)
Q Consensus 177 l~~~Gv~~~~~~~g~~~~~~~gg~~~--------~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~ 248 (647)
|+++|++|++..+|.+....+++|+. +|++|..+.+|..++..|.+.+.+ .||++++++.+++|+.+++|
T Consensus 81 L~~~Gv~F~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~~~tG~~i~~~L~~~~~~-~gi~i~~~~~~~~Li~~~~g- 158 (570)
T PRK05675 81 LEHMGLPFSRTETGRIYQRPFGGQSKDFGKGGQAARTCAAADRTGHALLHTLYQGNLK-NGTTFLNEWYAVDLVKNQDG- 158 (570)
T ss_pred HHHcCCccccCCCCceeecccCccccccccCCccceEEecCCCCHHHHHHHHHHHHhc-cCCEEEECcEEEEEEEcCCC-
Confidence 99999999998899888777888864 599999999999999999999986 59999999999999986566
Q ss_pred CCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchHHHHHHHcCCeecCccccccccccccCCCCCC
Q 006387 249 DAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPI 328 (647)
Q Consensus 249 ~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g~~~ 328 (647)
+|+||++.+..+|+.+.|+||+|||||||++++|..+++++.+||||++||+++||.+.||||+||||+.+...
T Consensus 159 --~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~~~~~~~~~~tGDG~~mA~~aGA~l~~me~~q~~Pt~~~~~---- 232 (570)
T PRK05675 159 --AVVGVIAICIETGETVYIKSKATVLATGGAGRIYASTTNALINTGDGVGMALRAGVPVQDIEMWQFHPTGIAGA---- 232 (570)
T ss_pred --eEEEEEEEEcCCCcEEEEecCeEEECCCCcccccCCCCCCCCcCcHHHHHHHHcCCCeeCccceeeecceeCCC----
Confidence 89999998878899999999999999999999999999999999999999999999999999999999877421
Q ss_pred CCCCCCCccceeeecccCCCceEEeCCCCccccccccc-cccCchhHHHHHHHHHHHhcCC-----CeEEEecCCCChhH
Q 006387 329 KPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVARSIDDQLKKRNE-----KYVLLDISHKPTEK 402 (647)
Q Consensus 329 ~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~-~~l~~rd~~~~~i~~~~~~~~~-----~~v~ld~~~~~~~~ 402 (647)
.++++++++++|++++|.+|+|||++|++. .++.+||+++++|..++..+.+ ..+|+|.++++++.
T Consensus 233 --------~~l~~e~~rg~g~~lvN~~GeRF~~~y~~~~~el~~rd~v~~ai~~ei~~~~g~~~~~~~v~ld~~~l~~~~ 304 (570)
T PRK05675 233 --------GVLVTEGCRGEGGYLINKHGERFMERYAPNAKDLAGRDVVARSMVKEILAGNGCGPNKDHVLLKLDHLGEEV 304 (570)
T ss_pred --------ceEeeccccCCCcEEECCCCCCcccccCcccccccchhHHHHHHHHHHHhcCCccCCCCEEEEEcCCCCHHH
Confidence 457888999999999999999999999876 5899999999999999876432 35999999999888
Q ss_pred HHhhChhHHHHHHH-cCCCCCCCCeeeeeeeceecCceEECCCCCc----------ccCceeecccccCCCCCCCCccch
Q 006387 403 ILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGET----------NVRGLYVAGEVACTGLHGANRLAS 471 (647)
Q Consensus 403 l~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T----------~ipGLyAaGe~a~~g~~Ga~rl~g 471 (647)
+..+||.+.+.++. .|+||.++|++|.|+.||+||||.||.+++| +|||||||||++|+|+||+|||+|
T Consensus 305 l~~~~~~~~~~~~~~~~~d~~~~~i~v~P~~h~t~GGi~vd~~g~~~~~d~~~~~t~IpGLYAaGE~a~~g~hGanrlgg 384 (570)
T PRK05675 305 LHSRLPGICELSKTFAHVDPVVAPIPVVPTCHYMMGGVATNIHGQAITQDANGNDQIIPGLFAVGEVACVSVHGANRLGG 384 (570)
T ss_pred HHHhccHHHHHHHHhcCCCcCCCceEeehhHhccCCCcccCCCCeeecccccccCCccCCeeecccccccCCCCcccccc
Confidence 89999998887777 4899999999999999999999999999986 799999999999889999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcccc--cccccccccccccCcccccccchhhhhcHHHHHHHHHHHHHhcCccccCHHH
Q 006387 472 NSLLEALVFARRAVQPSIDHKKSTSI--DLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTS 549 (647)
Q Consensus 472 ~sl~~a~v~G~~Ag~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~ 549 (647)
|||++|+|||++||++|+++++.... +..+.. ......... .... ......+.+++++||++||+|+||+|++++
T Consensus 385 nsl~~a~v~Gr~Ag~~aa~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~-~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~ 461 (570)
T PRK05675 385 NSLLDLVVFGRAAGLHLEKALKEGIEYRDASESD-IDAALARLN-KLNE-RTGGEDVAALRRELQSCMQNYFGVFRTGEY 461 (570)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcccccccCChHH-HHHHHHHHH-HHhc-cCCCCCHHHHHHHHHHHHHhhCCceecHHH
Confidence 99999999999999999988643210 100000 000000000 0000 001134677889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccC-cccccchHHHHHHHhHHHHHHHHHHHHHhcCcCcccccccCCCCCccCCCCCeeec
Q 006387 550 LQTAEWRIDELEAEWETYLFEHG-WEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTIIL 628 (647)
Q Consensus 550 l~~al~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~~~~~~ 628 (647)
|++||.+|++|++++..+...+. ...+..+++++|++|||++|+++++|||.|+||||+|||+|||++||++|+++++.
T Consensus 462 L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~d~~~~~~~~~ 541 (570)
T PRK05675 462 MQKGIAQLADLRERIANVKINDKSQAFNTARIEALELQNLLEVAEATAIAAEVRKESRGAHAREDFEDRDDENWLCHTLY 541 (570)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCCCCCChhhhcceEEE
Confidence 99999999999988776432211 11234568899999999999999999999999999999999999998777776653
No 26
>PRK08071 L-aspartate oxidase; Provisional
Probab=100.00 E-value=1.1e-86 Score=732.61 Aligned_cols=497 Identities=42% Similarity=0.662 Sum_probs=427.9
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHHHHH
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVV 166 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~ 166 (647)
++||||||+|.|||+||++|++ | +|+||||....+|+|.+++||+++...+.|+++.|++|+++.+.+++|+++++.+
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~~ 81 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVRYL 81 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHHHH
Confidence 6899999999999999999987 8 9999999999899999999999988778899999999999999999999999999
Q ss_pred HHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeecc-CCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC
Q 006387 167 CTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAA-DMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTL 245 (647)
Q Consensus 167 ~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~-~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~ 245 (647)
++++++.++||.++|++|+++.+|.+....+++|+.+|+++.. +.+|..++..|.+.+. .||++++++.+++|+.+
T Consensus 82 ~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~--~gV~i~~~~~v~~Li~~- 158 (510)
T PRK08071 82 VEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV--PHVTVVEQEMVIDLIIE- 158 (510)
T ss_pred HHHHHHHHHHHHHcCCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh--cCCEEEECeEhhheeec-
Confidence 9999999999999999999888888777788999999998874 7789999999998886 48999999999999976
Q ss_pred CCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchHHHHHHHcCCeecCccccccccccccCCC
Q 006387 246 DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEG 325 (647)
Q Consensus 246 ~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g 325 (647)
++ +|.|+.+.+ .+|+.+.|+||.|||||||++.+|+.+++++.+||||+.|++++|+.+.+|||+||||+.+...+
T Consensus 159 ~g---~v~Gv~~~~-~~g~~~~i~Ak~VVlATGG~~~~~~~~t~~~~~tGdG~~ma~~aGa~l~~me~~q~~pt~~~~~~ 234 (510)
T PRK08071 159 NG---RCIGVLTKD-SEGKLKRYYADYVVLASGGCGGLYAFTSNDKTITGDGLAMAYRAGAELVDLEFIQFHPTMLYANG 234 (510)
T ss_pred CC---EEEEEEEEE-CCCcEEEEEcCeEEEecCCCcccccCCCCCCCcccHHHHHHHHcCCceeCCcceeEeeeEecCCC
Confidence 55 899999877 46777789999999999999999999999999999999999999999999999999998775432
Q ss_pred CCCCCCCCCCccceeeecccCCCceEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCCeEEEecCCCChhHHHh
Q 006387 326 LPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILS 405 (647)
Q Consensus 326 ~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~l~~rd~~~~~i~~~~~~~~~~~v~ld~~~~~~~~l~~ 405 (647)
.+ ..++++.++++|++++|.+|+|||++|++..+++|||++++++..++.++ ..+|+|+++.+ .+.+
T Consensus 235 ~~---------~~li~e~~rg~g~~lvn~~G~RF~~~~~~~~e~~~rd~v~~ai~~~~~~~--~~v~ld~~~~~--~~~~ 301 (510)
T PRK08071 235 RC---------VGLVSEAVRGEGAVLINEDGRRFMMGIHPLADLAPRDVVARAIHEELLSG--EKVYLNISSIQ--NFEE 301 (510)
T ss_pred cc---------ceeechhhcCCceEEECCCCCCCccccCccccCCCHHHHHHHHHHHHHcC--CeEEEeccchH--HHHH
Confidence 10 23678889999999999999999999999889999999999999998764 47999998765 4678
Q ss_pred hChhHHHHHHHcCCCCCCCCeeeeeeeceecCceEECCCCCcccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHH
Q 006387 406 HFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAV 485 (647)
Q Consensus 406 ~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag 485 (647)
++|++.+++++.|+|+.++++||.|..||++|||+||.+++|+|||||||||++|+|+||+||++||||++|+|||++||
T Consensus 302 ~~~~i~~~~~~~gid~~~~~i~v~p~~h~~~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag 381 (510)
T PRK08071 302 RFPTISALCEKNGVDIETKRIPVVPGAHFLMGGVKTNLDGETSIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAA 381 (510)
T ss_pred HhhHHHHHHHHhCcCCCCCceeEehhheEEcCCEEECCCCcccCCCeEEcccccccccCCCcccchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred HHHHHhhhcccccccccccccccccCcccccccchhhhhcHHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHH
Q 006387 486 QPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWE 565 (647)
Q Consensus 486 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~al~~l~~l~~~~~ 565 (647)
++|+.+.... .+.... +.. .. .....+...+++||++||+|+||+|++++|++|+.+|++|+.+..
T Consensus 382 ~~aa~~~~~~-~~~~~~--------~~~--~~---~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~a~~~l~~l~~~~~ 447 (510)
T PRK08071 382 EHILTKATKP-RLNPFA--------EKE--KK---FIVLNHLPTKEEIQEKMMKYVGIVRTEQSLSEAKRWLEKYGVRNM 447 (510)
T ss_pred HHHHhhccCC-cccchh--------hhh--hh---hccccchHHHHHHHHHHHhhccEEEcHHHHHHHHHHHHHHHHhhh
Confidence 9998764221 000000 000 00 000111233579999999999999999999999999999973321
Q ss_pred HhhhccCcccccchHHHHHHHhHHHHHHHHHHHHHhcCcCcccccccCCCCCccCCCCCeeec
Q 006387 566 TYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTIIL 628 (647)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~~~~~~ 628 (647)
..+ . .....+.+|++|||++|+++++|||.|+||||+|||+|||++ +|.+++++
T Consensus 448 --~~~--~--~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~---~~~~~~~~ 501 (510)
T PRK08071 448 --ILD--H--DALTNEEIELSHMLTVAKLIVVSALQRTESRGGHYRSDYPHR---NWRGKEIV 501 (510)
T ss_pred --hcc--c--cccchhHHHHHhHHHHHHHHHHHHHhCCCCccceecCCCCcc---ccCceEEE
Confidence 100 0 111246789999999999999999999999999999999998 45555553
No 27
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=100.00 E-value=8.7e-86 Score=724.42 Aligned_cols=487 Identities=47% Similarity=0.718 Sum_probs=427.6
Q ss_pred ccCEEEECcchHHHHHHHHHHhcCCeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHHHHHH
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 167 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~ 167 (647)
++||||||+|+|||+||+.|++.|.|+||||....+|+|.+++||+.+...+.|+++.|++|+++.+.+++|+++++.++
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~ 81 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGRVIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFVV 81 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCCEEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHHH
Confidence 58999999999999999999998899999999888999999999999888888999999999999999999999999999
Q ss_pred HHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCC
Q 006387 168 TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 247 (647)
Q Consensus 168 ~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g 247 (647)
+++++.++||+++|++|.+..+|.+.....++|+++|+++..+.+|..+...|.+.+.+.+||++++++.+++|+.+ ++
T Consensus 82 ~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~-~g 160 (488)
T TIGR00551 82 SDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIE-TG 160 (488)
T ss_pred HhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeecc-CC
Confidence 99999999999999999988888888778899999999998888999999999999987569999999999999986 55
Q ss_pred CCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchHHHHHHHcCCeecCccccccccccccCCCCC
Q 006387 248 PDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLP 327 (647)
Q Consensus 248 ~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g~~ 327 (647)
+|.|+.+.+. ++...|+|+.||+||||++.+|..++++..+||||+.||+++|+.+.+|||+||||+.+...+.
T Consensus 161 ---~v~Gv~~~~~--~~~~~i~A~~VVlAtGG~~~~~~~~~~~~~~tGdG~~~A~~aGa~l~~me~~q~~pt~~~~~~~- 234 (488)
T TIGR00551 161 ---RVVGVWVWNR--ETVETCHADAVVLATGGAGKLYQYTTNPKISTGDGIALAWRAGVRVRDLEFNQFHPTALYKPRA- 234 (488)
T ss_pred ---EEEEEEEEEC--CcEEEEEcCEEEECCCcccCCCCCcCCCCccCcHHHHHHHHcCCcEECCcceEEEeeEecCCCC-
Confidence 7999988753 4456799999999999999999999999999999999999999999999999999987754321
Q ss_pred CCCCCCCCccceeeecccCCCceEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCCeEEEecCCCChhHHHhhC
Q 006387 328 IKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILSHF 407 (647)
Q Consensus 328 ~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~l~~rd~~~~~i~~~~~~~~~~~v~ld~~~~~~~~l~~~~ 407 (647)
..+++++.++++|++++|.+|+||+++|++..|+++||++++++..++.+++..++|+|.++++ .+.+++
T Consensus 235 --------~~~l~~~~~~g~g~~lvn~~G~RF~~~~~~~~el~~rd~v~~ai~~~~~~~~~~~v~ld~~~~~--~~~~~~ 304 (488)
T TIGR00551 235 --------RYFLITEAVRGEGAYLVDRDGTRFMADFHPRGELAPRDIVARAIDHEMKRGGADCVFLDASGIE--AFRQRF 304 (488)
T ss_pred --------cceeeehhhcCCceEEECCCCCChhhccCcccccCchHHHHHHHHHHHHhcCCCeEEecCcchH--HHHHHc
Confidence 1457888899999999999999999999998899999999999999988765457999999765 477899
Q ss_pred hhHHHHHHHcCCCCCCCCeeeeeeeceecCceEECCCCCcccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHHH
Q 006387 408 PNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQP 487 (647)
Q Consensus 408 ~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~ 487 (647)
|++.+++.+.|+|+.++|++|.|..|+++|||+||.++||+|||||||||++|+|+||+||++||||++|+|||++||++
T Consensus 305 ~~~~~~~~~~G~D~~~~~i~v~p~~h~t~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~ 384 (488)
T TIGR00551 305 PTIYAKCLGAGIDPTREPIPVVPAAHYTCGGISVDDHGRTTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAED 384 (488)
T ss_pred chHHHHHHHhCCCCCCCceecccccEEecCCEEECCCCcccCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred HHHhhhcccccccccccccccccCcccccccchhhhhcHHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHh
Q 006387 488 SIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETY 567 (647)
Q Consensus 488 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~al~~l~~l~~~~~~~ 567 (647)
|+++....+.. ............ .. .. ...+.+++.+||++||+|+||+|++++|++|+.+|++|++++..
T Consensus 385 aa~~~~~~~~~-~~~~~~~~~~~~---~~---~~-~~~~~~~~~~l~~~m~~~~gi~r~~~~l~~al~~~~~l~~~~~~- 455 (488)
T TIGR00551 385 ISRRPPYASDI-STSPPWDEPRSE---NP---DD-RVVLQHNMSELRSFMWDYAGIVRLTKSLERALRRLVMLQQEIDE- 455 (488)
T ss_pred HHhhccccCcc-chhhhhhhhhhc---cc---cc-ccchHHHHHHHHHHHhheeeEEEcHHHHHHHHHHHHHHHHHHHH-
Confidence 98875321110 000000000000 00 00 12356778899999999999999999999999999999876542
Q ss_pred hhccCcccccchHHHHHHHhHHHHHHHHHHHHHhcCcCcccccccCCC
Q 006387 568 LFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP 615 (647)
Q Consensus 568 ~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P 615 (647)
++++||+++|+++++|||.||||||+|||+|||
T Consensus 456 ---------------~~~~~~~~~a~~~~~~al~R~ESrG~H~R~D~p 488 (488)
T TIGR00551 456 ---------------YELRNLVQVAKLITRSALMREESRGAHFRLDYP 488 (488)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHhCCCCccceecCCCC
Confidence 247999999999999999999999999999998
No 28
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=100.00 E-value=4.5e-86 Score=721.88 Aligned_cols=524 Identities=40% Similarity=0.570 Sum_probs=462.2
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecCC-----CCCHHHHHHHHHHhcccCCC
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCP-----SDSVESHMQDTIVAGAYLCD 159 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~-----~d~~~~~~~~~~~~g~~~~~ 159 (647)
..+|||||||||.|||+||+.|++.| +|+||||....+|+|.+++||+++.... .|+++.|+.|+++.+++++|
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l~d 83 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGLGD 83 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhccCCcCC
Confidence 45799999999999999999999999 9999999999999999999999988742 25899999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEE
Q 006387 160 DETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAI 239 (647)
Q Consensus 160 ~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~ 239 (647)
++++..+++++++.+.+|+++|++|.+..+|.++..++++++.+|.++..+.+|..++..|.+++.+..+++++.+..++
T Consensus 84 qd~i~~~~~~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~~~~~~~~ 163 (562)
T COG1053 84 QDAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIEIFDEYFVL 163 (562)
T ss_pred HHHHHHHHHhhHHHHHHHHHhCCCcccCCCccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcchhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999986688999999999
Q ss_pred EEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchHHHHHHHcCCeecCccccccccc
Q 006387 240 DLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPT 319 (647)
Q Consensus 240 ~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~ 319 (647)
+|++++++ .|.|++.++..+|+.+.++||+||+||||++.+|+.+++....||||+.|++++|+.+.||||+||||+
T Consensus 164 ~l~~~~~~---~v~Gvv~~~~~~g~~~~~~akavilaTGG~g~~~~~~t~~~~~tGdG~~ma~~aGa~l~dme~~Q~hpt 240 (562)
T COG1053 164 DLLVDDGG---GVAGVVARDLRTGELYVFRAKAVILATGGAGRLYPYTTNAHIGTGDGVAMAYRAGAPLIDMEFVQFHPT 240 (562)
T ss_pred hheecCCC---cEEEEEEEEecCCcEEEEecCcEEEccCCceEEEeccCCccccCCcHHHHHHhcCCcccCCCccccccc
Confidence 99988554 599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCccceeeecccCCCceEEeCCCCcccccc--cc-ccccCchhHHHHHHHHHHHhcCC------Ce
Q 006387 320 ALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY--DE-RAELAPRDVVARSIDDQLKKRNE------KY 390 (647)
Q Consensus 320 ~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~--~~-~~~l~~rd~~~~~i~~~~~~~~~------~~ 390 (647)
.+... .++++|+.|++|++++|.+|+|||++| .+ ..++.|||++++++..++.++++ .+
T Consensus 241 ~~~~~------------g~l~~e~~RgeGG~l~N~~Gerf~e~~~~~~~~~~l~~rd~~~r~~~~ei~~G~g~~~~~~~~ 308 (562)
T COG1053 241 GLVGS------------GILITEAVRGEGGILLNKDGERFMERYGYAPKYKELAPRDVVSRAILMEIREGRGVDGPGGDY 308 (562)
T ss_pred eecCC------------ceEEeeecccCCCeEecCCcceeeccccccccccccCCcchHHHHHHHHHhcCCCcccCCCce
Confidence 98652 578999999999999999999999994 33 47899999999999999988764 47
Q ss_pred EEEecCCCChhHHHhhChhHHHHHHH-cCCCCCCCCeeeeeeeceecCceEEC-CCCCcccCceeecccccCCCCCCCCc
Q 006387 391 VLLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAG-LQGETNVRGLYVAGEVACTGLHGANR 468 (647)
Q Consensus 391 v~ld~~~~~~~~l~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGi~vD-~~~~T~ipGLyAaGe~a~~g~~Ga~r 468 (647)
+++|+++++.+.+.+++|.+.+.+.. .|+|+.++|++|.|..||+||||++| .++.|.||||||||||+|+..||+||
T Consensus 309 v~ldl~hlg~~~~~~~l~~~~~~~~~~~g~D~~~~p~~v~p~~Hy~mGGi~~~~~~~~t~i~GLfAaGe~~~~~~hGanr 388 (562)
T COG1053 309 VYLDLRHLGKEELEERLPGIRELAKKFAGIDPVKEPIPVRPTVHYTMGGIPTNTGRVETKIPGLFAAGEAAGVSHHGANR 388 (562)
T ss_pred EEEEhhhcChHHHHhcCchHHHHHHhhcCCCcccceeEecccceeccCCEeecccccccCCCCeEECceecccccCCccc
Confidence 89999998888888999988777655 68999999999999999999999999 57789999999999999877789999
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhhhcccccccccccccccccCcccccccch-hhhhcHHHHHHHHHHHHHhcCccccCH
Q 006387 469 LASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMH-NILRRTKEVRKELQSIMWRYVGIVRST 547 (647)
Q Consensus 469 l~g~sl~~a~v~G~~Ag~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~m~~~~g~~r~~ 547 (647)
|++|||++++|||++||..|++|++......+...... ......+... .....+.+++++||++|++++||+|++
T Consensus 389 lG~nsl~~~~v~G~~Ag~~aa~y~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~l~~~m~~~~~i~R~~ 464 (562)
T COG1053 389 LGGNSLLDLVVFGRIAGEAAAEYAKEKSGSPPASAVEA----ERERFDALLRRGGDENPAQIREELQEVMGDNVGIFRNE 464 (562)
T ss_pred CCccccHHHHHHHHHHHHHHHHHHHhccCCCchhHHHH----HHHHHHHHHhccCCCCHHHHHHHHHHHhhCCceeccCH
Confidence 99999999999999999999999976533211000000 0000000000 112468999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccC-cccccchHHHHHHHhHHHHHHHHHHHHHhcCcCcccccccCCCCCccCCCCCee
Q 006387 548 TSLQTAEWRIDELEAEWETYLFEHG-WEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTI 626 (647)
Q Consensus 548 ~~l~~al~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~~~~ 626 (647)
+.|++++++|++|++++.+....+. ...+.++.+++|+.|||.+|++++.+||.|+||||+|||+|||++||++|++++
T Consensus 465 ~~l~~~~~~i~~l~~~~~~~~~~d~~~~~n~~l~~~~el~~~l~~A~~~~~~al~R~EsRgah~r~d~p~rdD~~w~kht 544 (562)
T COG1053 465 EGLEKALEKLKELRERLKDIRVTDKSELFNTDLRDALELGNMLDVAEAVAASALARTESRGAHYREDYPERDDENWLKHT 544 (562)
T ss_pred HHHHHHHHHHHHHHHHhhcceecchhHhhhhhhHHHHhHHHHHHHHHHHHHHHhcCcccccccCCccCCccchHHHHHHH
Confidence 9999999999999999987332221 122346788999999999999999999999999999999999999999999887
Q ss_pred ec
Q 006387 627 IL 628 (647)
Q Consensus 627 ~~ 628 (647)
+.
T Consensus 545 ~~ 546 (562)
T COG1053 545 LA 546 (562)
T ss_pred HH
Confidence 74
No 29
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=100.00 E-value=1.2e-84 Score=724.28 Aligned_cols=501 Identities=38% Similarity=0.565 Sum_probs=431.1
Q ss_pred HHhcC-CeEEEEecCCCCCCccccCCCeeeecC--CCCCHHHHHHHHHHhcccCCCHHHHHHHHHHhHHHHHHHHHcCCC
Q 006387 107 VAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC--PSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGAS 183 (647)
Q Consensus 107 aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~--~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~Gv~ 183 (647)
|++.| +|+||||....+|+|.+++|||++..+ ++|+++.|++|+++.+.+++|+++++.+++++++.++||+++|++
T Consensus 1 ~a~~G~~VilveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~~~~~~s~~~i~~L~~~Gv~ 80 (565)
T TIGR01816 1 LAKGGVNTACVTKLFPTRSHTVAAQGGISAALGNMEEDNWRWHMYDTVKGSDWLGDQDAIEYMCKQAPEAVLELEHMGMP 80 (565)
T ss_pred CCCCCCceEEEEcCCCCCccHHHhcchheeccCCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 45778 999999999999999999999988775 479999999999999999999999999999999999999999999
Q ss_pred cccCCCCCccccccCCcc--------ccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEE
Q 006387 184 FDRGEDGNLHLAREGGHS--------HHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGV 255 (647)
Q Consensus 184 ~~~~~~g~~~~~~~gg~~--------~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv 255 (647)
|.+..+|.+....+++|+ .+|+++..+.+|..++..|.+.+.+ .||+|++++.+++|+.+ +| +|+||
T Consensus 81 f~~~~~g~~~~~~~gg~~~~~~~~~~~~R~~~~~~~~G~~i~~~L~~~~~~-~gi~i~~~~~~~~Li~~-~g---~v~Ga 155 (565)
T TIGR01816 81 FSRTEDGKIYQRPFGGHTRDFGKGGAAERACAAADRTGHAILHTLYQQNLK-ADTSFFNEYFALDLLME-DG---ECRGV 155 (565)
T ss_pred cccCCCCceeecccccccccccCCcceeEEeecCCCchHHHHHHHHHHHHh-CCCEEEeccEEEEEEee-CC---EEEEE
Confidence 998888877666677774 4799998889999999999999987 59999999999999986 66 89999
Q ss_pred EEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchHHHHHHHcCCeecCccccccccccccCCCCCCCCCCCCC
Q 006387 256 DTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRE 335 (647)
Q Consensus 256 ~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g~~~~p~~~~~ 335 (647)
++.+..+|+.+.|+||+|||||||++++|..+++++.+||||+.||+++||.+.||||+||||+.+...
T Consensus 156 ~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me~~q~~pt~~~~~----------- 224 (565)
T TIGR01816 156 IAYCLETGEIHRFRAKAVVLATGGYGRIYFSTTNAHTLTGDGTGMVTRAGLPLQDMEFVQFHPTGIAGA----------- 224 (565)
T ss_pred EEEEcCCCcEEEEEeCeEEECCCCccccCCCcCCCCCCccHHHHHHHHcCCcccCCcceEEccCcccCC-----------
Confidence 998877899889999999999999999999999999999999999999999999999999999876421
Q ss_pred ccceeeecccCCCceEEeCCCCccccccccc-cccCchhHHHHHHHHHHHhcCC-----CeEEEecCCCChhHHHhhChh
Q 006387 336 NSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVARSIDDQLKKRNE-----KYVLLDISHKPTEKILSHFPN 409 (647)
Q Consensus 336 ~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~-~~l~~rd~~~~~i~~~~~~~~~-----~~v~ld~~~~~~~~l~~~~~~ 409 (647)
.+++++.++++|++++|.+|+||+++|++. .++.+||+++++|..++.++++ .++|+|+++++.+.+..++|.
T Consensus 225 -~~l~~e~~r~~g~~lvn~~G~RF~~~y~~~~~el~~rd~v~~ai~~e~~~~~g~~~~~~~v~ld~~~~~~~~l~~~~~~ 303 (565)
T TIGR01816 225 -GCLITEGCRGEGGILINANGERFMERYAPTAKDLASRDVVSRSMTLEIREGRGVGPNKDHVYLDLDHLGPEVLEGRLPG 303 (565)
T ss_pred -ceEEeccccCCceEEECCCCCCCccccCccccccCchhHHHHHHHHHHHhcCCCCCCCCeEEEEccCCCHHHHHHHhhh
Confidence 457788899999999999999999999876 5899999999999999876432 479999999999999999999
Q ss_pred HHHHHHH-cCCCCCCCCeeeeeeeceecCceEECCCCC---------cccCceeecccccCCCCCCCCccchhhhHHHHH
Q 006387 410 IAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGE---------TNVRGLYVAGEVACTGLHGANRLASNSLLEALV 479 (647)
Q Consensus 410 ~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~---------T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v 479 (647)
+.+.+.. .|+|+.++|++|.|++||++|||.||.+++ |+||||||||||+|+|+||+||++||+|++|+|
T Consensus 304 ~~~~~~~~~G~D~~~~~i~v~p~~h~t~GGi~id~~g~vl~~~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsl~~a~v 383 (565)
T TIGR01816 304 ISETARTFAGVDPVKDPIPVLPTVHYNMGGIPTNYHGQVLRDGNGNDQIVPGLYAAGEAACVSVHGANRLGTNSLLDLVV 383 (565)
T ss_pred HHHHHHHHcCCCCCCCcEEeeeeeeeecCCceeCCCceEcccccCCCCccCCeeecccccccCCCccccchhhHHHHHHH
Confidence 9888887 699999999999999999999999999998 689999999999988999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccccccccccccccccCccccc-ccch--hhhhcHHHHHHHHHHHHHhcCccccCHHHHHHHHHH
Q 006387 480 FARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGC-NVMH--NILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWR 556 (647)
Q Consensus 480 ~G~~Ag~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~al~~ 556 (647)
||++||++|+++++..... ... ........... ..+. .....+.+++++||++||+|+||+|++++|++|+.+
T Consensus 384 fGr~Ag~~aa~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~ 459 (565)
T TIGR01816 384 FGRAAGLSAAEYAKPGSDV-KPM---PPNAGEESVMRLDKLRFATGGERVAALRLELQRSMQNHAGVFRTGEVLQKGVEK 459 (565)
T ss_pred HHHHHHHHHHHhhcccccc-ccc---ccchhHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhCCeeEEECHHHHHHHHHH
Confidence 9999999999987532100 000 00000000000 0000 011246788899999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcc-CcccccchHHHHHHHhHHHHHHHHHHHHHhcCcCcccccccCCCCCccCCCCCeeec
Q 006387 557 IDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTIIL 628 (647)
Q Consensus 557 l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~~~~~~ 628 (647)
|++|++++..+...+ ....++++++++|++|||++|+++++|||+|+||||+|||+|||++||++|+++++.
T Consensus 460 l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~d~~~~~~~~~ 532 (565)
T TIGR01816 460 ISALKERYKNVKINDKSKVWNTDLVEALELQNLLECAEATAVSAEARKESRGAHAREDFPERDDENWLKHTLS 532 (565)
T ss_pred HHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCCCCCCccccccEEEE
Confidence 999998876642111 123357889999999999999999999999999999999999999999888887763
No 30
>PRK08401 L-aspartate oxidase; Provisional
Probab=100.00 E-value=5e-78 Score=658.61 Aligned_cols=456 Identities=35% Similarity=0.530 Sum_probs=391.9
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHHHHHH
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 167 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~ 167 (647)
+||||||+|+|||+||+.|++.| +|+||||.. ..+++.+++||++....+.|+++.|+.|+++.+.+++|+++++.++
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~-~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~ 80 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI-KKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVI 80 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC-CCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 69999999999999999999999 999999986 4567788899998777778999999999999999999999999999
Q ss_pred HHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCC
Q 006387 168 TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 247 (647)
Q Consensus 168 ~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g 247 (647)
+++++.++||.++|++|... ...++|+++|+++..+.+|..+...|.+.+.+ .|++++++ .+++|+.+ ++
T Consensus 81 ~~~~~~i~~L~~~Gv~f~~~-------~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~-~gv~i~~~-~v~~l~~~-~g 150 (466)
T PRK08401 81 SKSSEAYDFLTSLGLEFEGN-------ELEGGHSFPRVFTIKNETGKHIIKILYKHARE-LGVNFIRG-FAEELAIK-NG 150 (466)
T ss_pred HHHHHHHHHHHHcCCCcccC-------CCcCCccCCeEEECCCCchHHHHHHHHHHHHh-cCCEEEEe-EeEEEEee-CC
Confidence 99999999999999999753 13477888998888888899999999999987 59999876 79998875 55
Q ss_pred CCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchHHHHHHHcCCeecCccccccccccccCCCCC
Q 006387 248 PDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLP 327 (647)
Q Consensus 248 ~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g~~ 327 (647)
+|+|+.. +++ .++|+.|||||||++.+|..+++++.++|||+.+++++||.+.+|||+||||+.+....
T Consensus 151 ---~v~Gv~~----~g~--~i~a~~VVLATGG~~~~~~~~~~~~~~tGdg~~~a~~aGA~l~~me~~q~~p~~~~~~~-- 219 (466)
T PRK08401 151 ---KAYGVFL----DGE--LLKFDATVIATGGFSGLFKFTAGSPLNLGTLIGDAVMKGAPARDLEFVQFHPTGFIGKR-- 219 (466)
T ss_pred ---EEEEEEE----CCE--EEEeCeEEECCCcCcCCCCCcCCCCCCCcHHHHHHHHcCCcccCceeeEEecccccCCC--
Confidence 7888875 243 58999999999999999998889999999999999999999999999999998764211
Q ss_pred CCCCCCCCccceeeecccCCCceEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCCeEEEecCCCChhHHHhhC
Q 006387 328 IKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILSHF 407 (647)
Q Consensus 328 ~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~l~~rd~~~~~i~~~~~~~~~~~v~ld~~~~~~~~l~~~~ 407 (647)
..+++++.++++|+++||.+|+||++ |+.+||++++++..++..+ ..+|+|.+++ +.+.+++
T Consensus 220 --------~~~l~~e~~r~~g~ilvN~~G~RF~~------E~~~rd~v~~ai~~~~~~~--~~v~ld~~~~--~~~~~~~ 281 (466)
T PRK08401 220 --------GTYLISEAVRGAGAKLVTGDGERFVN------ELETRDIVARAIYRKMQEG--KGVFLDATGI--EDFKRRF 281 (466)
T ss_pred --------CCeEEeeecccCceEEECCCCCChhc------ccccHHHHHHHHHHHHhcC--CEEEEeCcCH--HHHHHHh
Confidence 14678899999999999999999996 5678999999999988764 4799999876 3567789
Q ss_pred hhHHHHHHHcCCCCCCCCeeeeeeeceecCceEECCCCCcccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHHH
Q 006387 408 PNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQP 487 (647)
Q Consensus 408 ~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~ 487 (647)
|.+++.+.+.|+|+.++++|+.|..||++|||+||.++||+|||||||||++|+|+||+|||+||||++++|||++||++
T Consensus 282 ~~~~~~~~~~G~D~~~~~i~v~p~~h~t~GGi~vd~~~~t~IpGLyAaGE~a~~G~hG~nrl~gnsl~~~~v~G~~ag~~ 361 (466)
T PRK08401 282 PQIYAFLRKEGIDPSRDLIPVTPIAHYTIGGISVDTFYRTGIKNLYAIGEAASNGFHGANRLASNSLLECIVSGLEVART 361 (466)
T ss_pred HHHHHHHHHcCCCcCCcccccccceeecCCCEEECCCCcccCCCEEECccccccCCCCCCcchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999997899999999999999999999999999
Q ss_pred HHHhhhcccccccccccccccccCcccccccchhhhhcHHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHh
Q 006387 488 SIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETY 567 (647)
Q Consensus 488 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~al~~l~~l~~~~~~~ 567 (647)
|++.... .... . ..+. .. ..+..+ ++||++||+++||+|+++.|++++.+|++|+++
T Consensus 362 aa~~~~~----~~~~---~--~~~~-------~~--~~~~~~-~~l~~~m~~~~gi~r~~~~l~~~~~~~~~l~~~---- 418 (466)
T PRK08401 362 ISRERPK----LREV---K--EPPY-------HG--YELGDV-DSIREILWNHAGIVRSEESLREGLKKLEGIEAD---- 418 (466)
T ss_pred HhhhCcC----cccc---c--hhhh-------hc--cccccH-HHHHHHHhccceEEECHHHHHHHHHHHHHHHhc----
Confidence 8764210 0000 0 0000 00 011223 569999999999999999999999999988531
Q ss_pred hhccCcccccchHHHHHHHhHHHHHHHHHHHHHhcCcCcccccccCCCCCccCCCCCe
Q 006387 568 LFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPT 625 (647)
Q Consensus 568 ~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~~~ 625 (647)
.+|+++|++|++|||.|+||||+|||+|||++|++|.++.
T Consensus 419 ------------------~~~~~~a~~~~~~al~R~esrG~h~r~D~p~~~~~~~~~~ 458 (466)
T PRK08401 419 ------------------PRLKLLAKGVLECALAREESRGAHYREDFPFMRKEFERPS 458 (466)
T ss_pred ------------------cCHHHHHHHHHHHHHhcCCCccceecCCCCccChhhhccc
Confidence 2578899999999999999999999999999988877665
No 31
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=100.00 E-value=1.1e-77 Score=665.39 Aligned_cols=503 Identities=21% Similarity=0.251 Sum_probs=383.0
Q ss_pred CEEEECcchHHHHHHHHHH----hcC-CeEEEEecCCCCCCccccCC--CeeeecC---CCCCHHHHHHHHHHhcccCCC
Q 006387 90 DFSVIGSGVAGLCYALEVA----KHG-TVAVITKAEPHESNTNYAQG--GVSAVLC---PSDSVESHMQDTIVAGAYLCD 159 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa----~~G-~V~llEk~~~~~G~t~~a~G--gi~~~~~---~~d~~~~~~~~~~~~g~~~~~ 159 (647)
||||||||+|||+||+.|+ +.| +|+||||....++++ +++| |++.... ..|+++.+++++++.+.+++|
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~~s~s-~A~G~~gi~~~~~~~~g~Ds~e~~~~d~~~~~~gl~d 79 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLERSGA-VAQGLSAINTYLGTRFGENNAEDYVRYVRTDLMGLVR 79 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCCCCCc-cccccchhhhhhhcccCCCCHHHHHHHHHHhcCCCCc
Confidence 8999999999999999998 679 999999998765544 6777 4554333 258899999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHcCCCcccCC-CCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEE
Q 006387 160 DETVRVVCTEGPDRIRELIAIGASFDRGE-DGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFA 238 (647)
Q Consensus 160 ~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~-~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v 238 (647)
+++++.+++++++.++||.++|++|++.. +|.+. ..+.. . ....|..+.+.+...+.+ .++++++++.+
T Consensus 80 ~~lV~~lv~~s~~~i~~L~~~Gv~F~~~~~~G~~~--~~g~~----~---~~~gG~~~~r~l~~~l~~-~~~~i~~~~~v 149 (614)
T TIGR02061 80 EDLIFDMARHVDDSVHLFEEWGLPLWIKPEDGKYV--REGRW----Q---IMIHGESYKPIVAEAAKN-ALGDIFERIFI 149 (614)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCceecCCCCccc--cCCCc----c---cCcCchhHHHHHHHHHHh-CCCeEEcccEE
Confidence 99999999999999999999999998753 55322 11110 0 011245555666666665 37899999999
Q ss_pred EEEEecCC--CCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCC-C--------CCCCCcchHHHHHHHcCCe
Q 006387 239 IDLLTTLD--GPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPST-T--------NPLVATGDGMAMAHRAQAV 307 (647)
Q Consensus 239 ~~l~~~~~--g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~-~--------~~~~~tGdg~~~a~~aGa~ 307 (647)
++|+++++ | +|+||.+.+..+|+.+.|.||+|||||||++.+|..+ + +++.+||||+.||+++||.
T Consensus 150 ~~Ll~d~~~~G---rV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ly~~~~~~~~~~~~~~~~~~TGdGi~mA~~aGA~ 226 (614)
T TIGR02061 150 VKLLLDKNTPN---RIAGAVGFNVRANEVHVFKAKTVIVAAGGAVNVYRPRSVGEGAGRAWYAVWNAGSTYTMCAQAGAE 226 (614)
T ss_pred EEEEecCCCCC---eEEEEEEEEeCCCcEEEEECCEEEECCCccccccCCcccccccccccCCCCcCcHHHHHHHHcCCC
Confidence 99998643 5 8999999887788888999999999999999988643 2 4788999999999999999
Q ss_pred ecCccccccccccccCCCCCCCCCCCCCccceeeecccCCCceEEeCCCCccccccccc-------cccC----chhHHH
Q 006387 308 ISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-------AELA----PRDVVA 376 (647)
Q Consensus 308 l~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~-------~~l~----~rd~~~ 376 (647)
+.+||| ||||+.+.....+ ....++++| ++++|.+|+|||.+|+|. .+++ |||+++
T Consensus 227 l~dme~-qf~pt~~~~~~~~------~~~~~l~~e------a~l~n~~Gerf~~~~~~~~~~~~~r~~~~~~~~~rd~va 293 (614)
T TIGR02061 227 MTQMEN-RFVPARFKDGYGP------VGAWFLLFK------AKATNGKGEEYCATNRAMLKPYEGRGYAKPHVIPTCLRN 293 (614)
T ss_pred ccCCcc-ceecceeccccCC------CCceEEEee------eEEECCCCCChhhccchhhhhcccccccccCCCcHHHHH
Confidence 999999 9999988643211 111467776 699999999998777653 2333 478999
Q ss_pred HHHHHHHHhcCCCeEEEecCCC---------------ChhHHHhhChhHHHHHH---HcCCCCCCCCeeeeeeeceecC-
Q 006387 377 RSIDDQLKKRNEKYVLLDISHK---------------PTEKILSHFPNIAAECL---KYGLDITSQPIPVVPAAHYMCG- 437 (647)
Q Consensus 377 ~~i~~~~~~~~~~~v~ld~~~~---------------~~~~l~~~~~~~~~~~~---~~G~d~~~~~i~v~p~~~~~~G- 437 (647)
++|..++.+++ ++||||++++ +.+.+...+|.....+. ..|+||.++||||.|++||+||
T Consensus 294 rai~~e~~~g~-g~vyLD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~~~ipV~PaaHy~mGg 372 (614)
T TIGR02061 294 HMMLREMREGR-GPIYMDTKEALQDPFATDKKQQKHLEEEAWEDFLDMTVGQANLWAATNVDPEERGSEIMPTEPYLMGS 372 (614)
T ss_pred HHHHHHHHcCC-CCEEeeccccchhhhhhcccccccccHHHHHHhccccHHHHHHHHHcCCCCcCCCcccccccCeecCC
Confidence 99999998764 5699998844 34445556664444333 2599999999999999999999
Q ss_pred -----ceEEC-----------------CCCCcccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhcc
Q 006387 438 -----GVRAG-----------------LQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKST 495 (647)
Q Consensus 438 -----Gi~vD-----------------~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~ 495 (647)
||+|| .+++|+||||||||||+|+|+| |++||||+++.++|..|++.+.......
T Consensus 373 ~~~~~Gi~vd~~~~~~~~~~~~~~~~~~~~~T~i~gLyA~Ge~~~~~~h---~l~~nsl~eg~~ag~~a~~~~~~~~~~~ 449 (614)
T TIGR02061 373 HSGCCGIWVSGPEDWVPEEYKVRAAKVYNRMTTVEGLFTCGDGVGASPH---KFSSGSFTEGRIAAKAAVRWILDHKDFK 449 (614)
T ss_pred cccccceeecccccccccccccccccccCCccccCCEEeceecccCcch---hhHHhHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99998 9999999999999999988998 5899999986666666555432211000
Q ss_pred ccccccccccc-ccccCccc-c---c----ccchhhhhcHHHHHHHHHHHHHhcCccc-----cCHHHHHHHHHHHHHHH
Q 006387 496 SIDLSASNWWT-RTVVPKSL-G---C----NVMHNILRRTKEVRKELQSIMWRYVGIV-----RSTTSLQTAEWRIDELE 561 (647)
Q Consensus 496 ~~~~~~~~~~~-~~~~~~~~-~---~----~~~~~~~~~~~~~~~~l~~~m~~~~g~~-----r~~~~l~~al~~l~~l~ 561 (647)
....++..... ....+... . . .........+.+++++||++||+|+||+ |++++|++||++|++|+
T Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~Gi~~~~~~R~~~~L~~al~~l~~l~ 529 (614)
T TIGR02061 450 PEFDATAEELKKEIYRPMENYEVYKNASTAPVVNPNYINPKQGLMRLQKCMDEYGGGVTTYYMTNEALLDTGLKLMAMLE 529 (614)
T ss_pred CCChhHHHHHHHHhhhhHHHHHhhhccccCCCcCccCCCHHHHHHHHHHHHHhhcCccccccccCHHHHHHHHHHHHHHH
Confidence 00000000000 00000000 0 0 0000000135678899999999999999 99999999999999998
Q ss_pred HHHHHhhhccCcccccchHHHHHHHhHHHHHHHHHHHHHhcCcCc--ccccccCCCCCccCCCCCeee
Q 006387 562 AEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESR--GLHYMVDFPHVEENKRLPTII 627 (647)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESR--G~h~R~D~P~~d~~~~~~~~~ 627 (647)
+++..+ ...+.+++++++|++|||++|+++++|||+|+||| |+|||+|||++||++|+++++
T Consensus 530 ~~~~~~----~~~~~~~~~~a~el~n~l~~a~~i~~aal~R~ESR~~G~H~R~DyP~~~d~~w~~~~~ 593 (614)
T TIGR02061 530 EDLEKL----AARDLHELLRAWELYHRLWTVEAHMQHILFRKETRWPGYYYRADFLGLDDENWKCFVN 593 (614)
T ss_pred HHHhcc----cCCChHHHHHHHHHHHHHHHHHHHHHHHHhCcCcCCCCccccCCCCCCCchhhhceEE
Confidence 877542 22345788999999999999999999999999999 999999999998877777765
No 32
>PRK08275 putative oxidoreductase; Provisional
Probab=100.00 E-value=9.2e-77 Score=661.57 Aligned_cols=501 Identities=23% Similarity=0.291 Sum_probs=390.1
Q ss_pred ccccCEEEECcchHHHHHHHHHHhc--C-CeEEEEecCCCCCCc-cccCCCeeeecCC-CCCHHHHHHHHHHhcccCCCH
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEPHESNT-NYAQGGVSAVLCP-SDSVESHMQDTIVAGAYLCDD 160 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~--G-~V~llEk~~~~~G~t-~~a~Ggi~~~~~~-~d~~~~~~~~~~~~g~~~~~~ 160 (647)
..++||||||+|.||++||+.|++. | +|+||||....++++ ..+.+|++....+ .|+++.|+.|+++.+.+++++
T Consensus 7 ~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~ 86 (554)
T PRK08275 7 EVETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQ 86 (554)
T ss_pred eEecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccH
Confidence 4579999999999999999999986 6 999999998754433 3455666554333 589999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEE
Q 006387 161 ETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAID 240 (647)
Q Consensus 161 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~ 240 (647)
++++.+++++++.++||+++|++|.+..+|.+.... .|...+ ....+.+|..+...|.+.+++ .||+|++++.+++
T Consensus 87 ~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~--~~~~~~-~~~~~~~G~~i~~~L~~~~~~-~gv~i~~~~~v~~ 162 (554)
T PRK08275 87 KAVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKK--VHHMGS-YVLPMPEGHDIKKVLYRQLKR-ARVLITNRIMATR 162 (554)
T ss_pred HHHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeec--ccccCc-ccccCCChHHHHHHHHHHHHH-CCCEEEcceEEEE
Confidence 999999999999999999999999877666543221 111111 001234688899999999987 5999999999999
Q ss_pred EEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccccc------CCC-CCCCCCCcchHHHHHHHcCCeecCccc
Q 006387 241 LLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI------YPS-TTNPLVATGDGMAMAHRAQAVISNMEF 313 (647)
Q Consensus 241 l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~------~~~-~~~~~~~tGdg~~~a~~aGa~l~~~e~ 313 (647)
|+.++++ +|.||.+.+..+|+...++||.|||||||++++ |.. +.+++.+||||+.||+++||.+.+|||
T Consensus 163 Li~~~~g---~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~~~p~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me~ 239 (554)
T PRK08275 163 LLTDADG---RVAGALGFDCRTGEFLVIRAKAVILCCGAAGRLGLPASGYLFGTYENPTNAGDGYAMAYHAGAELANLEC 239 (554)
T ss_pred EEEcCCC---eEEEEEEEecCCCcEEEEECCEEEECCCCccccCCCCcCcccccccCCCccccHHHHHHHcCCcccCceE
Confidence 9986455 899999887667887889999999999999986 322 234568999999999999999999999
Q ss_pred cccccccccCCCCCCCCCCCCCccceeeecccCCCceEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCCeEEE
Q 006387 314 VQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLL 393 (647)
Q Consensus 314 ~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~l~~rd~~~~~i~~~~~~~~~~~v~l 393 (647)
+||||+.....+ +. ..++++ +.|++++|.+|+|||++|++. ..++++|..++.+++ ++|||
T Consensus 240 ~q~~p~~~~~~~----~~-----~~~~~~---~~g~~lvn~~G~RF~~~~~~~------~~~~~ai~~e~~~g~-g~v~l 300 (554)
T PRK08275 240 FQINPLIKDYNG----PA-----CAYVTG---PLGGYTANAKGERFIECDYWS------GQMMWEFYQELQSGN-GPVFL 300 (554)
T ss_pred EEEeceeecCCC----Cc-----cceecc---ccCcEEeCCCCCccccccCCc------hHHHHHHHHHHHcCC-CcEEE
Confidence 999997553221 10 112221 468899999999999987653 358999999998765 57999
Q ss_pred ecCCCChhHHHhhCh---------hHHHHHHHcCCCCCCCCeeeeeeece-----ecCceEECCCCCcccCceeeccccc
Q 006387 394 DISHKPTEKILSHFP---------NIAAECLKYGLDITSQPIPVVPAAHY-----MCGGVRAGLQGETNVRGLYVAGEVA 459 (647)
Q Consensus 394 d~~~~~~~~l~~~~~---------~~~~~~~~~G~d~~~~~i~v~p~~~~-----~~GGi~vD~~~~T~ipGLyAaGe~a 459 (647)
|+++++.+.+. ++| ++...+...|+||.++|+||.|++|| +||||+||.+++|+|||||||||++
T Consensus 301 d~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~g~D~~~~~i~v~p~~~~~~g~~~~Ggi~~d~~~~t~i~gl~a~Ge~~ 379 (554)
T PRK08275 301 KLDHLAEETIQ-TIETILHTNERPSRGRFHEGRGTDYRQQMVEMHISEIGFCSGHSASGVWVNEKAETTVPGLYAAGDMA 379 (554)
T ss_pred ECCCCCHHHHH-HHHhhhhhcccchHHHHHHHcCCCcccCcccccCCCceeecccccCcEEECCCCccCCCCEEECcccC
Confidence 99999876543 233 33444566899999999999998774 5679999999999999999999997
Q ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhcccc-cccccccccccccCcccccccchhhhhcHHHHHHHHHHHHH
Q 006387 460 CTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSI-DLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMW 538 (647)
Q Consensus 460 ~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 538 (647)
|.+ ++++.+|++||++||++|++|++.... +.+... ..... ....... .......+.+++++||++||
T Consensus 380 ~~~--------~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~-~~~~~~~~~~~~~~lq~~m~ 448 (554)
T PRK08275 380 SVP--------HNYMLGAFTYGWFAGENAAEYVAGRDLPEVDAAQ-VEAER-ARVLAPL-HREDGLPPAQVEYKLRRLVN 448 (554)
T ss_pred Cch--------hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHH-HHHHH-HHHhccc-cccCCCCHHHHHHHHHHHHH
Confidence 433 589999999999999999998754321 110000 00000 0000000 00111357788999999999
Q ss_pred hcCccccCHHHHHHHHHHHHHHHHHHHHhhhccCcccccchHHHHHHHhHHHHHHHHHHHHHhcCcCccc--ccccCCCC
Q 006387 539 RYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGL--HYMVDFPH 616 (647)
Q Consensus 539 ~~~g~~r~~~~l~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~--h~R~D~P~ 616 (647)
+|+||+|++++|++||++|++|++++..+ ...+.+++++++|++|||++|+++++|||+||||||+ |||+|||+
T Consensus 449 ~~~gi~R~~~~L~~al~~l~~l~~~~~~~----~~~~~~~~~~~~e~~n~l~~a~~i~~aal~R~ESRG~~~H~R~DyP~ 524 (554)
T PRK08275 449 DYLQPPKVTRKMEIGLQRFAEIREDLERI----KARDPHELMRALEVSSIRDCAEMAARASLFRTESRWGLYHYRVDFPE 524 (554)
T ss_pred hhcCccccHHHHHHHHHHHHHHHHHHHhc----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCCCCC
Confidence 99999999999999999999999887653 2334578899999999999999999999999999999 99999999
Q ss_pred CccCCCCCeeec
Q 006387 617 VEENKRLPTIIL 628 (647)
Q Consensus 617 ~d~~~~~~~~~~ 628 (647)
+||++|+++++.
T Consensus 525 ~~~~~~~~~~~~ 536 (554)
T PRK08275 525 RNDAEWFCHTHL 536 (554)
T ss_pred CChhhhceeeEE
Confidence 999877766653
No 33
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=100.00 E-value=4e-76 Score=687.37 Aligned_cols=496 Identities=24% Similarity=0.312 Sum_probs=388.5
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCC-CCCccccCCCeeee-cCCCCCHHHHHHHHHHhcccCCCHHH
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH-ESNTNYAQGGVSAV-LCPSDSVESHMQDTIVAGAYLCDDET 162 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~-~G~t~~a~Ggi~~~-~~~~d~~~~~~~~~~~~g~~~~~~~~ 162 (647)
..++||||||||.|||+||+.|++.| +|+||||.... +|++....||++.. ....|+++.|+.|+++.+.+++|+++
T Consensus 11 ~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~~~sg~~~~g~~gi~~~~~~~~ds~e~~~~Dt~~~g~gl~d~~~ 90 (897)
T PRK13800 11 RLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHVRHSGALAMGMDGVNNAVIPGKAEPEDYVAEITRANDGIVNQRT 90 (897)
T ss_pred eeecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccccCCCcccCCchhhhcccCCCccCHHHHHHHHHhhcCCCCCHHH
Confidence 46799999999999999999999999 99999999873 34444445566433 23368999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccce-ee-ccCCchHHHHHHHHHHHHcC---CCcEEEcceE
Q 006387 163 VRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRI-VH-AADMTGREIERALLEAVVSD---PNISVFEHHF 237 (647)
Q Consensus 163 ~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~-~~-~~~~~g~~~~~~L~~~~~~~---~gv~i~~~~~ 237 (647)
++.+++++++.++||+++|++|++..+|.+..... .+. .+ ..+.+|..+...|.+.+.+. .+|++++++.
T Consensus 91 v~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~-----~~~~~~~~~~~tG~~i~~~L~~~l~~~~~~~~i~~~~~~~ 165 (897)
T PRK13800 91 VYQTATRGFAMVQRLERYGVKFEKDEHGEYAVRRV-----HRSGSYVLPMPEGKDVKKALYRVLRQRSMRERIRIENRLM 165 (897)
T ss_pred HHHHHHhHHHHHHHHHHcCCceeeCCCCCEeeeee-----ccCCCccccCCCchhHHHHHHHHHHHhhhcCCcEEEecee
Confidence 99999999999999999999999887776543221 111 11 13457888888888877653 3799999999
Q ss_pred EEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccccc------C--CCCCCCCCCcchHHHHHHHcCCeec
Q 006387 238 AIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI------Y--PSTTNPLVATGDGMAMAHRAQAVIS 309 (647)
Q Consensus 238 v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~------~--~~~~~~~~~tGdg~~~a~~aGa~l~ 309 (647)
+++|+.+ +| +|+||++++..+|+.+.|+||+|||||||++++ | ..+++ +.+||||++||+++||.+.
T Consensus 166 ~~~Li~~-~g---~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~~~p~~~~~~~~~~~-~~~tGDG~amA~raGA~l~ 240 (897)
T PRK13800 166 PVRVLTE-GG---RAVGAAALNTRTGEFVTVGAKAVILATGPCGRLGLPASGYLYGTYEN-PTNAGDGYSMAYHAGAELS 240 (897)
T ss_pred eEEEEee-CC---EEEEEEEEecCCCcEEEEECCEEEECCCccccCCCCCcccccCccCC-CCcccHHHHHHHHcCCccc
Confidence 9999986 56 899999998888999999999999999999987 3 22334 4799999999999999999
Q ss_pred CccccccccccccCCCCCCCCCCCCCccceeeecccCCCceEEeCCCCccccc-cccccccCchhHHHHHHHHHHHhcCC
Q 006387 310 NMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPL-YDERAELAPRDVVARSIDDQLKKRNE 388 (647)
Q Consensus 310 ~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~-~~~~~~l~~rd~~~~~i~~~~~~~~~ 388 (647)
||||+||||+.....| .++++.++++|++++|.+|+|||++ |.+ + .+...+..++.+++
T Consensus 241 ~me~vqfhPt~~~~~g------------~~~~~~~~~~G~~lvN~~GeRFm~~~~~~------~-~i~~~i~~ei~~g~- 300 (897)
T PRK13800 241 GIECFQINPLIKDYNG------------PACAYVANPFGGYQVNAQGERFVDSDYWS------G-QMMAEVKREIESAR- 300 (897)
T ss_pred CceeEEeeccccCCCC------------chhheeecccCcEEECCCCCccccCcccc------h-hHHHHHHHHHhcCC-
Confidence 9999999997663222 1233456788999999999999974 422 1 23445667776654
Q ss_pred CeEEEecCCCChhHHHhhChhHHHH---------HHHcCCCCCCCCeeeee-----eeceecCceEECCCCCcccCceee
Q 006387 389 KYVLLDISHKPTEKILSHFPNIAAE---------CLKYGLDITSQPIPVVP-----AAHYMCGGVRAGLQGETNVRGLYV 454 (647)
Q Consensus 389 ~~v~ld~~~~~~~~l~~~~~~~~~~---------~~~~G~d~~~~~i~v~p-----~~~~~~GGi~vD~~~~T~ipGLyA 454 (647)
++||||+++++.+.+. +||.+... +...|+||.++++++.| ..|++||||+||.+++|+||||||
T Consensus 301 g~vyLD~~~l~~e~~~-~l~~~~~~~~~p~~~~~~~~~G~d~~~~~i~v~p~~~~~~~~~~~GGi~vd~~~~T~v~GLfA 379 (897)
T PRK13800 301 GPIYLKVSHLPEETLS-ALESILHTTERPTRGTFHANRGHDYRTHDIEMHISEIGLCSGHSASGVWVDEHARTTVPGLYA 379 (897)
T ss_pred CCEEEECCCCCHHHHH-HHHHhhhhcccchHHHHHHhcCCCcccccceecccccccccCCCcceEEecCCCcccCCCeEe
Confidence 6799999999877665 67766543 23479999999999754 557788999999999999999999
Q ss_pred cccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhcccc--cccccccccccccCcccccccch-hhhhcHHHHHH
Q 006387 455 AGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSI--DLSASNWWTRTVVPKSLGCNVMH-NILRRTKEVRK 531 (647)
Q Consensus 455 aGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 531 (647)
||||+|+ ++|+|++|+|||++||++|++|+.+... +.... ...... . .. ...+. .....+.++++
T Consensus 380 aGE~a~~--------~~nsl~~a~v~G~~Ag~~a~~~~~~~~~~~~~~~~-~~~~~~-~-~~-~~~~~~~~~~~~~~~~~ 447 (897)
T PRK13800 380 AGDLACV--------PHNYMIGAFVFGDLAGAHAAGTLAEVPAPGELPAD-QLAEAH-E-LI-YRPLRHPDGPPQPQVEY 447 (897)
T ss_pred chhccCc--------chhhhhhHHHhHHHHHHHHHHHHhccCCCCCCCHH-HHHHHH-H-HH-hchhhccCCCChHHHHH
Confidence 9999863 2589999999999999999998754211 01000 000000 0 00 00000 00123457899
Q ss_pred HHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhhccCcccccchHHHHHHHhHHHHHHHHHHHHHhcCcCccc--c
Q 006387 532 ELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGL--H 609 (647)
Q Consensus 532 ~l~~~m~~~~g~~r~~~~l~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~--h 609 (647)
+||++||+|+||+|++++|++||++|++|++++..+ ...+++++++++|++|||++|++|++|||+||||||+ |
T Consensus 448 ~l~~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~----~~~~~~~l~~~~e~~n~l~~a~~i~~aAl~R~ESRG~~~H 523 (897)
T PRK13800 448 KLRRFVNDYVAPPKTAAKLSIAVETFERMAAEIAGM----GARTPHELMRCAEVSFIRDCAEMAARSSLTRTESRWGLYH 523 (897)
T ss_pred HHHHHHHcccCccchHHHHHHHHHHHHHHHHHHHhc----CCCChHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc
Confidence 999999999999999999999999999999887653 2334678899999999999999999999999999999 9
Q ss_pred cccCCCCCccCCCCCeeec
Q 006387 610 YMVDFPHVEENKRLPTIIL 628 (647)
Q Consensus 610 ~R~D~P~~d~~~~~~~~~~ 628 (647)
||+|||++||++|++++++
T Consensus 524 ~R~DyP~~~d~~w~~~~~~ 542 (897)
T PRK13800 524 DRADLPERDDASWGYHLNL 542 (897)
T ss_pred ccCCCCCCChHhhhhheee
Confidence 9999999999878777664
No 34
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=100.00 E-value=1.5e-75 Score=655.01 Aligned_cols=504 Identities=19% Similarity=0.221 Sum_probs=391.9
Q ss_pred ccccCEEEECcchHHHHHHHHHHhc--C-CeEEEEecCCCCCCccccCC--CeeeecCCCCCHHHHHHHHHHhcccCCCH
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEPHESNTNYAQG--GVSAVLCPSDSVESHMQDTIVAGAYLCDD 160 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~--G-~V~llEk~~~~~G~t~~a~G--gi~~~~~~~d~~~~~~~~~~~~g~~~~~~ 160 (647)
..++||||||||+|||+||+.|++. | +|+||||....++++ +++| +++......|+++.+++++++.+.+++|+
T Consensus 9 ~~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~-~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~ 87 (608)
T PRK06854 9 EVDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGA-VAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVRE 87 (608)
T ss_pred eeEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcc-cccCccccccccccCCCHHHHHHHHHHhccCCCCH
Confidence 4579999999999999999999998 9 999999998765443 4444 34554556789999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEE
Q 006387 161 ETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAID 240 (647)
Q Consensus 161 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~ 240 (647)
++++.+++++++.++||+++|++|....+|.+.. .+ + .+ . ...|..+...|.+.+++..||++++++.|++
T Consensus 88 ~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~--~g-~--~~-~---~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~ 158 (608)
T PRK06854 88 DLVYDIARHVDSVVHLFEEWGLPIWKDENGKYVR--RG-R--WQ-I---MINGESYKPIVAEAAKKALGDNVLNRVFITD 158 (608)
T ss_pred HHHHHHHHhHHHHHHHHHHcCCeeeecCCCCccc--cC-C--cc-C---CCChHHHHHHHHHHHHhcCCCEEEeCCEEEE
Confidence 9999999999999999999999998776665431 11 1 11 1 1357788888888887754699999999999
Q ss_pred EEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCC---------CCCCCcchHHHHHHHcCCeecCc
Q 006387 241 LLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTT---------NPLVATGDGMAMAHRAQAVISNM 311 (647)
Q Consensus 241 l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~---------~~~~~tGdg~~~a~~aGa~l~~~ 311 (647)
|+.+ ++ +|+||.+.+..+++...|.||.|||||||++.+|..++ +++.+||||+.||+++||.+.||
T Consensus 159 Li~~-~g---~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~~~~~~~~~~~~~~~~tGDGi~mA~~aGA~l~~m 234 (608)
T PRK06854 159 LLVD-DN---RIAGAVGFSVRENKFYVFKAKAVIVATGGAAGIYRPRSPGEGRGRMWYPPFNTGSGYAMGIRAGAEMTTF 234 (608)
T ss_pred EEEe-CC---EEEEEEEEEccCCcEEEEECCEEEECCCchhhccCCCCcccccccccCCCCCccHHHHHHHHhCCcccCC
Confidence 9976 45 89999887766787778999999999999998876532 36789999999999999999999
Q ss_pred cccccccccccCCCCCCCCCCCCCccceeeecccCCCceEEeCCCCcccccccccc---------ccCchhHHHHHHHHH
Q 006387 312 EFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERA---------ELAPRDVVARSIDDQ 382 (647)
Q Consensus 312 e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~---------~l~~rd~~~~~i~~~ 382 (647)
|| ||||+.+..... |. ..+ ++++|++++|.+|+|||++|+|.. +++|||+++++|..+
T Consensus 235 e~-qf~p~~~~~~~~---~~-----~~~----~~~~ga~lvn~~GeRFm~~y~p~~~~~~~~~~~~~~~rd~varai~~e 301 (608)
T PRK06854 235 EN-RFIPLRFKDGYG---PV-----GAW----FLLFKAKAVNALGEEYEAKNAAELKKYVPYADYKPIPTCLRNYATVEE 301 (608)
T ss_pred cc-eEeccccCCCCC---Cc-----ccc----eeecCceeeCCCCcccccCCchhhhccccccccCCCChhHHHHHHHHH
Confidence 99 999997653111 10 111 246899999999999999998742 467899999999999
Q ss_pred HHhcCCCeEEEecCCCC------hhHHHhh---ChhHHHHHHHcCCCCCCCCeeeeeeeceecCc------eEEC-----
Q 006387 383 LKKRNEKYVLLDISHKP------TEKILSH---FPNIAAECLKYGLDITSQPIPVVPAAHYMCGG------VRAG----- 442 (647)
Q Consensus 383 ~~~~~~~~v~ld~~~~~------~~~l~~~---~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GG------i~vD----- 442 (647)
+++++ ++||||+++++ .+.+.++ +|.+...+...|+||.++||||.|++||+||| |.||
T Consensus 302 ~~~g~-g~v~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giD~~~~~ipV~P~~Hy~mGG~~~~~Gi~vd~~~~~ 380 (608)
T PRK06854 302 NKAGR-GPIYMDTEEALQDKHLESELWEDFLDMTPGQALLWAAQNIEPEEENSEIMGTEPYIVGSHSGASGYWVSGPEDW 380 (608)
T ss_pred HhcCC-CCeEEEcccccccchhHHHHHHHHhccCHHHHHHHHHcCCCcccCceeeeccCCeeecCCCCceEEEecCcccc
Confidence 98764 56999998875 2223333 36666666678999999999999999999997 8999
Q ss_pred --------CCCCcccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhccc---cccccc--ccc-ccc
Q 006387 443 --------LQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTS---IDLSAS--NWW-TRT 508 (647)
Q Consensus 443 --------~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~~---~~~~~~--~~~-~~~ 508 (647)
.+++|+||||||||||+|++.| +++++++. +|++||.+++++++... .+.... ... ...
T Consensus 381 ~~~~~~~~~~~~T~v~glyA~Ge~~~~~~~---~l~~~s~~----~g~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (608)
T PRK06854 381 VPEEYKWGYNRMTTVEGLFAAGDVVGGSPH---KFSSGSFA----EGRIAAKAAVRYILDNKDEKPEIDDDQIEELKKEI 453 (608)
T ss_pred cccccccccccccCCCCEEEeeecCCCCcc---hhHHHHHH----HHHHHHHHHHHHHHhCCcCCCCCCHHHHHHHHHHH
Confidence 9999999999999999865544 56666555 57777777777765421 111100 000 000
Q ss_pred ccCcc-cc-------cccchhhhhcHHHHHHHHHHHHHhcCccc-----cCHHHHHHHHHHHHHHHHHHHHhhhccCccc
Q 006387 509 VVPKS-LG-------CNVMHNILRRTKEVRKELQSIMWRYVGIV-----RSTTSLQTAEWRIDELEAEWETYLFEHGWEQ 575 (647)
Q Consensus 509 ~~~~~-~~-------~~~~~~~~~~~~~~~~~l~~~m~~~~g~~-----r~~~~l~~al~~l~~l~~~~~~~~~~~~~~~ 575 (647)
..+.. .. .........++.+++.+||++||+|+||+ |++++|++||++|++|++++..+ ...+
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~~~~~~R~~~~L~~al~~l~~l~~~~~~~----~~~~ 529 (608)
T PRK06854 454 YAPLERYEEFKDYSTDPDVNPNYISPEQLEERLQKIMDEYAGGISTNYTTNEKLLEIALELLEMLEEDSEKL----AARD 529 (608)
T ss_pred HhHHhhhhcccccccccccCCCCCCHHHHHHHHHHHHHHhCCCcchhhhhcHHHHHHHHHHHHHHHHHHHhc----cCCC
Confidence 00000 00 00000111246788899999999999998 99999999999999999887643 2233
Q ss_pred ccchHHHHHHHhHHHHHHHHHHHHHhcCcCc--ccccccCCCCCccCCCCCeeec
Q 006387 576 TFVGLEACEMRNLFCCAKLVVSSALARHESR--GLHYMVDFPHVEENKRLPTIIL 628 (647)
Q Consensus 576 ~~~~~~~~e~~~~l~~a~~~~~aal~R~ESR--G~h~R~D~P~~d~~~~~~~~~~ 628 (647)
.+++++++|++|||++|+++++|||+||||| |+|||+|||++||++|++++++
T Consensus 530 ~~~~~~~~el~~~l~~a~~i~~aAl~R~ESR~~G~H~R~DyP~~~~~~~~~~~~~ 584 (608)
T PRK06854 530 LHELMRCWELKHRLLVAEAHIRHLLFRKETRWPGYYERADYPGKDDENWKCFVNS 584 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCcCCCCChhhhcEEEEE
Confidence 5788899999999999999999999999999 9999999999998777777663
No 35
>KOG2403 consensus Succinate dehydrogenase, flavoprotein subunit [Energy production and conversion]
Probab=100.00 E-value=8.5e-76 Score=602.14 Aligned_cols=536 Identities=38% Similarity=0.563 Sum_probs=463.3
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecCC--CCCHHHHHHHHHHhcccCCCHHHH
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCP--SDSVESHMQDTIVAGAYLCDDETV 163 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~--~d~~~~~~~~~~~~g~~~~~~~~~ 163 (647)
..||-+|||+|.||+.+|+.+++.| +++++.|..+..+.+..++||+++.+.+ .|+++.|+.|+.+.+++++|++.+
T Consensus 54 ~~~da~vvgaggAGlr~~~~lae~g~~~a~itkl~p~~s~tvaaqGg~nA~l~~m~~d~~~~h~~dtv~~sd~l~dqd~i 133 (642)
T KOG2403|consen 54 HTYDAVVVGAGGAGLRAARGLAELGEKTAVITKLFPTRSHTVAAQGGINAALGNMGNDNWRWHMYDTVKGSDWLGDQDAI 133 (642)
T ss_pred eeceeEEEeccchhhhhhhhhhhcCceEEEEeccccccccchhhhhhhhhhhccCCCchhhhhhhhccccccccCchhhh
Confidence 3599999999999999999999999 9999999998889999999999988875 489999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCcc--------ccceeeccCCchHHHHHHHHHHHHcCCCcEEEcc
Q 006387 164 RVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHS--------HHRIVHAADMTGREIERALLEAVVSDPNISVFEH 235 (647)
Q Consensus 164 ~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~--------~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~ 235 (647)
..++.+++.++.+|+.+|.+|++.++|+++...+++++ ..|+++..+.+|..+...|..+..+. +..++.+
T Consensus 134 ~ym~~ea~~a~~el~~~g~~fs~~~dg~i~q~~~gg~s~~~gkggq~~r~~~~Ad~tg~~~~~tL~~~~l~~-~~~~f~~ 212 (642)
T KOG2403|consen 134 HYMCREAPKAVIELENYGMPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRACCVADRTGHALLHTLYGQSLRH-NTSFFVE 212 (642)
T ss_pred hHHHhhcchhHHHHHhccCccccccCCcHHHhhhhccccCcccccccccEEEeecccccHHHhhhHHHHhcc-chhhHHH
Confidence 99999999999999999999999999999988888887 67888999999999999999998875 7777777
Q ss_pred eEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchHHHHHHHcCCeecCccccc
Q 006387 236 HFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQ 315 (647)
Q Consensus 236 ~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q 315 (647)
..+++++.+. + .+.|+++.+..++...+++++.+|+||||+++.|...+++...||||.+|+.++|+.+.+|||+|
T Consensus 213 yfa~dll~~~-g---~~~~~va~~~~d~~i~~~r~~~ti~a~gg~G~~y~s~t~~~t~TgdG~a~~~ra~~~l~d~efvq 288 (642)
T KOG2403|consen 213 YFALDLLMSQ-G---ECVGVIALNLEDGTIHRFRAKNTILATGGYGRAYFSCTSAHTCTGDGNAMASRAGAPLSDMEFVQ 288 (642)
T ss_pred HHHHHHHHhc-c---CceEEEEEEeecccceeeeeeeeEEEEeccceEEEEeccCeeEccCCCeEEeeccCCCcccceee
Confidence 7778888763 4 57888888888899999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCCCCCCCccceeeecccCCCceEEeCCCCcccccccccc-ccCchhHHHHHHHHHHHhcC-----CC
Q 006387 316 FHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERA-ELAPRDVVARSIDDQLKKRN-----EK 389 (647)
Q Consensus 316 ~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~-~l~~rd~~~~~i~~~~~~~~-----~~ 389 (647)
|||+.+.+.| .++++..+++|++++|..|+|||..|.+.. ++++||++++++..++.+++ .+
T Consensus 289 fhpt~i~g~G------------cliteg~rgeGG~l~n~~~erfme~y~~~akdla~rdvvsrs~tmei~~grg~g~~kd 356 (642)
T KOG2403|consen 289 FHPTGIYGAG------------CLITEGVRGEGGILINSNGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPNKD 356 (642)
T ss_pred eeeecccccc------------eeeeecccccccceeeccceeeccccccchhhcchhhhhhhhhhhhhHhhcccCCCCC
Confidence 9999987653 479999999999999999999999999875 89999999999999988743 36
Q ss_pred eEEEecCCCChhHHHhhChhHHHH-HHHcCCCCCCCCeeeeeeeceecCceEECCCC----------CcccCceeecccc
Q 006387 390 YVLLDISHKPTEKILSHFPNIAAE-CLKYGLDITSQPIPVVPAAHYMCGGVRAGLQG----------ETNVRGLYVAGEV 458 (647)
Q Consensus 390 ~v~ld~~~~~~~~l~~~~~~~~~~-~~~~G~d~~~~~i~v~p~~~~~~GGi~vD~~~----------~T~ipGLyAaGe~ 458 (647)
.+|+++.+.+++.++.++|.+.+. ....|+|.+++|+||.|.+||.||||.++.++ .+.|||||||||+
T Consensus 357 ~~~l~l~h~p~e~~~~~~p~is~ta~i~agvdVt~epiPv~ptvhy~~ggi~t~~~g~~~~~~~~g~d~vvpGL~a~GEa 436 (642)
T KOG2403|consen 357 HVYLQLSHLPPEPLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYNGEVLTIREVGQDQVVPGLYACGEA 436 (642)
T ss_pred ccchhhccCChhhhcccCCCcchhhhhHhhcCccccccccCCCcccccCccccCCccceeeeccccccccccceeehhHH
Confidence 799999999999999999988763 45579999999999999999999999988777 4789999999999
Q ss_pred cCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhccc-ccccccccccccccCcccccccc--hhhhhcHHHHHHHHHH
Q 006387 459 ACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTS-IDLSASNWWTRTVVPKSLGCNVM--HNILRRTKEVRKELQS 535 (647)
Q Consensus 459 a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~ 535 (647)
+|.++||+||||.|||++.+|||+..|.+++..++... .++-..+.+.+... ...++ .+......++|.+||+
T Consensus 437 ac~svHGANRLgaNSLLdlvvfgraca~~ia~~~~pg~~~~~~~~~~g~~sv~----~ld~lr~~~gsi~TselRl~MQk 512 (642)
T KOG2403|consen 437 ACASVHGANRLGANSLLDLVVFGRACALSIAEELRPGDKVPPLASNAGEESVA----NLDKLRFADGSIRTSELRLEMQK 512 (642)
T ss_pred HHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcccchHH----HHHhhhcccCCccHHHHHHHHHH
Confidence 99999999999999999999999999999888664321 11000000000000 00001 0112467899999999
Q ss_pred HHHhcCccccCHHHHHHHHHHHHHHHHHHHHhh-hccCcccccchHHHHHHHhHHHHHHHHHHHHHhcCcCcccccccCC
Q 006387 536 IMWRYVGIVRSTTSLQTAEWRIDELEAEWETYL-FEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDF 614 (647)
Q Consensus 536 ~m~~~~g~~r~~~~l~~al~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~ 614 (647)
.||++++|+|....|+++..+|.+|..+++++. .+++.--+.+|.+.+||+||+.+|...+.+|+.||||||+|+|+||
T Consensus 513 sMqnhaaVFR~g~~LqEG~~kIskl~~~~k~lktfDrgmvWNsdLVETLELqNLl~cA~qTi~~AeaRkESRGAHAReDy 592 (642)
T KOG2403|consen 513 TMQKHAAVFRVGSVLQEGCRKISKLYGDFKDLKTFDRGMVWNSDLVETLELQNLLLCALQTIYSAEARKESRGAHAREDF 592 (642)
T ss_pred HHhhcceEEEechHHHHHHHHHHHHHhHHhhhccccccceechhHHHHHHHHHHHHHHHHHHHHHHhccccccchhhccc
Confidence 999999999999999999999999999998865 5556333678999999999999999999999999999999999999
Q ss_pred CCCccCCCCCeeec---CCCcccccccccccc
Q 006387 615 PHVEENKRLPTIIL---PSLVNCTWSSRQLHK 643 (647)
Q Consensus 615 P~~d~~~~~~~~~~---~~~~~~~~~~~~~~~ 643 (647)
|.++|++|.++++. .+..+.+|+-+|++.
T Consensus 593 ~~R~DehWrKHTlsy~~~~tg~Vtl~YRpVid 624 (642)
T KOG2403|consen 593 PVRIDEHWRKHTLSYWDVGTGKVTLEYRPVID 624 (642)
T ss_pred ccchhhhhccceeeeecCCCceEEEEEeeccc
Confidence 99999966555442 244468999888764
No 36
>PRK06175 L-aspartate oxidase; Provisional
Probab=100.00 E-value=5.2e-65 Score=549.98 Aligned_cols=428 Identities=39% Similarity=0.662 Sum_probs=363.8
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHHHH
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 165 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~ 165 (647)
.++||||||+|.|||+||+.|+ .| +|+||||....+|+|.+++||++... ..++++.+++++++.+.+.+|+++++.
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s~~a~ggi~~~~-~~d~~~~~~~d~~~~g~~~~d~~lv~~ 80 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNTYLAQGGISVAR-NKDDITSFVEDTLKAGQYENNLEAVKI 80 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCchHHHhHhheeCC-CCCCHHHHHHHHHHHhCCCCCHHHHHH
Confidence 4689999999999999999985 68 99999999999999999999998554 457899999999999999999999999
Q ss_pred HHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC
Q 006387 166 VCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTL 245 (647)
Q Consensus 166 ~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~ 245 (647)
+++++++.++||+++|++|....+ .+.....++|+..|+++..+.+|..++..|.+.++++.||+|++++.+++|+.+
T Consensus 81 ~~~~s~e~i~wL~~~Gv~f~~~~~-~~~~~~~g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~- 158 (433)
T PRK06175 81 LANESIENINKLIDMGLNFDKDEK-ELSYTKEGAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIEN- 158 (433)
T ss_pred HHHHHHHHHHHHHHcCCccccCCC-ceeeeccCccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEec-
Confidence 999999999999999999987543 344456788999999998888999999999998876569999999999999976
Q ss_pred CCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchHHHHHHHcCCeecCccccccccccccCCC
Q 006387 246 DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEG 325 (647)
Q Consensus 246 ~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g 325 (647)
++ +|.||++.+ +++.+.|.||.|||||||++++|..++++..++|||+.|++++|+.+.+|+|+|+||+.+...+
T Consensus 159 ~~---~v~Gv~~~~--~g~~~~i~Ak~VILAtGG~~~l~~~~~~~~~~tGdg~~ma~~~Ga~l~~m~~~q~~p~~~~~~~ 233 (433)
T PRK06175 159 DN---TCIGAICLK--DNKQINIYSKVTILATGGIGGLFKNSTNQRIITGDGIAIAIRNNIKIKDLDYIQIHPTAFYEET 233 (433)
T ss_pred CC---EEEEEEEEE--CCcEEEEEcCeEEEccCcccccCcCcCCCCCcchHHHHHHHHcCCCCcCCceEEEeceEeccCC
Confidence 55 799987654 4555679999999999999999998888899999999999999999999999999998775422
Q ss_pred CCCCCCCCCCccceeeecccCCCceEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCCeEEEecCCCChhHHHh
Q 006387 326 LPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILS 405 (647)
Q Consensus 326 ~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~l~~rd~~~~~i~~~~~~~~~~~v~ld~~~~~~~~l~~ 405 (647)
.. ...+++++.++++|+++||.+|+||++ |+.+++++++++..++.+.+..++|+|.++.+.+.+.+
T Consensus 234 ~~-------~~~~l~~~~~~~~g~ilVN~~G~RF~~------E~~~~~~~~~ai~~~~~~~~~~~v~~D~~~~~~~~~~~ 300 (433)
T PRK06175 234 IE-------GKKFLISESVRGEGGKLLNSKGERFVD------ELLPRDVVTKAILEEMKKTGSNYVYLDITFLDKDFLKN 300 (433)
T ss_pred CC-------CcceEeehhhcCCceEEECCCCCChhh------ccccHHHHHHHHHHHHHhcCCCeEEEecccCcHHHHHH
Confidence 10 114778888899999999999999997 46789999999999987665568999999998888888
Q ss_pred hChhHHHHHHHcCCCCCCCCeeeeeeeceecCceEECCCCCcccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHH
Q 006387 406 HFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAV 485 (647)
Q Consensus 406 ~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag 485 (647)
++|+++..+.+.|+|+.++++++.|+.||++|||+||.++||+|||||||||++|+|+||+||++||||++|+|||++||
T Consensus 301 ~~~~~yn~~~~~G~D~~~~~i~v~p~~h~t~GGi~vd~~~~t~i~gLYAaGE~a~~g~hG~nrl~gnsl~~~lvfGr~Ag 380 (433)
T PRK06175 301 RFPTIYEECLKRGIDITKDAIPVSPAQHYFMGGIKVDLNSKTSMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGA 380 (433)
T ss_pred HHHHHHHHHHHhCcCCCCCcEEEEcceeeecCCEEECCCccccCCCeEecccccccCCCccccchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred HHHHHhhhcccccccccccccccccCcccccccchhhhhcHHHHHHHHHHHHHhcCccccCHHHHHHHHH
Q 006387 486 QPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEW 555 (647)
Q Consensus 486 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~al~ 555 (647)
++|+..+...... . ...+. .......+.++++++|+.. +.|+.+.|++++.
T Consensus 381 ~~a~~~~~~~~~~-------~-~~~~~---------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 431 (433)
T PRK06175 381 EKINSEIDNIKLN-------I-TKVYT---------LKHDVEYYSLLNKKIIIKE--IEKLRGDLKDELV 431 (433)
T ss_pred HHHHHhhhccccc-------c-ccccc---------cccchhHHHHHHHHHHHHH--HHhhHHHHHHHhh
Confidence 9987654221110 0 00000 0012334446677777776 8888888887664
No 37
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=100.00 E-value=3.1e-50 Score=387.97 Aligned_cols=373 Identities=31% Similarity=0.424 Sum_probs=296.5
Q ss_pred CEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecC-------CCCCHHHHHHHHHHhcccCCCHH
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC-------PSDSVESHMQDTIVAGAYLCDDE 161 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~-------~~d~~~~~~~~~~~~g~~~~~~~ 161 (647)
.|+|||+|.|||+|+..+-..| .|+|+||....+|++..+..||++... ..|+|+.++.|++..+..-.+|+
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~e 90 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVPE 90 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCcHH
Confidence 6999999999999999999998 999999999999999999999987643 47999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHH-cCCCcccCCCCCccccccCCccccceeecc--CCchHHHHHHHHHHHHcC----C-CcEEE
Q 006387 162 TVRVVCTEGPDRIRELIA-IGASFDRGEDGNLHLAREGGHSHHRIVHAA--DMTGREIERALLEAVVSD----P-NISVF 233 (647)
Q Consensus 162 ~~~~~~~~~~~~i~~l~~-~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~--~~~g~~~~~~L~~~~~~~----~-gv~i~ 233 (647)
+++.+..+++.+++||+. .+++++ .+.+.|||+.||+.... ...|.+++.+|..++.+. + -++|+
T Consensus 91 Lm~~La~~S~~AvewL~~ef~lkld-------~la~lgGHSvpRTHr~s~plppgfei~~~L~~~l~k~as~~pe~~ki~ 163 (477)
T KOG2404|consen 91 LMEKLAANSASAVEWLRGEFDLKLD-------LLAQLGGHSVPRTHRSSGPLPPGFEIVKALSTRLKKKASENPELVKIL 163 (477)
T ss_pred HHHHHHhcCHHHHHHHhhhcccchH-------HHHHhcCCCCCcccccCCCCCCchHHHHHHHHHHHHhhhcChHHHhhh
Confidence 999999999999999985 777766 35678999999987532 335788888888776642 2 48999
Q ss_pred cceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccccc-------C------CCCCCCCCCcchHHHH
Q 006387 234 EHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI-------Y------PSTTNPLVATGDGMAM 300 (647)
Q Consensus 234 ~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~-------~------~~~~~~~~~tGdg~~~ 300 (647)
.+++|++|+.+ +| +|.||...| .+|+...+.++.||+|||||+.. | ..++|-...||||+.|
T Consensus 164 ~nskvv~il~n-~g---kVsgVeymd-~sgek~~~~~~~VVlatGGf~ysd~~lLKey~pel~~lpTTNG~~~tGDgqk~ 238 (477)
T KOG2404|consen 164 LNSKVVDILRN-NG---KVSGVEYMD-ASGEKSKIIGDAVVLATGGFGYSDKELLKEYGPELFGLPTTNGAQTTGDGQKM 238 (477)
T ss_pred hcceeeeeecC-CC---eEEEEEEEc-CCCCccceecCceEEecCCcCcChHHHHHHhChhhccCCcCCCCcccCcHHHH
Confidence 99999999965 66 899999997 46777789999999999999852 2 1577888899999999
Q ss_pred HHHcCCeecCccccccccccccCCCCCCCCCCCCCccceeeecccCCCceEEeCCCCccccccccccccCchhHHHHHHH
Q 006387 301 AHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSID 380 (647)
Q Consensus 301 a~~aGa~l~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~l~~rd~~~~~i~ 380 (647)
....||.+++|+.+|.||+.+.++..+..- -.||-.|++||.|++++|..|+||.+ ||..||.+.-.|.
T Consensus 239 l~klga~liDmd~vqvhptgfidpndr~~~-----wKfLAAEalRG~GaiLl~s~GrRF~n------ELg~RDyvTgei~ 307 (477)
T KOG2404|consen 239 LMKLGASLIDMDQVQVHPTGFIDPNDRTAL-----WKFLAAEALRGLGAILLNSTGRRFGN------ELGTRDYVTGEIQ 307 (477)
T ss_pred HHHhCccccccceeEecccCccCCCCchhH-----HHHHHHHHhccCceEEEeccchhhhc------ccccchhhhHhHH
Confidence 999999999999999999999875532211 15788899999999999999999997 6778898887776
Q ss_pred HHHHhcCCCeEEEecCCCChhHHHh------------hChhHHHHHHHcCCC---------------------CC-----
Q 006387 381 DQLKKRNEKYVLLDISHKPTEKILS------------HFPNIAAECLKYGLD---------------------IT----- 422 (647)
Q Consensus 381 ~~~~~~~~~~v~ld~~~~~~~~l~~------------~~~~~~~~~~~~G~d---------------------~~----- 422 (647)
+...-.....+++-+.....+.+.. ++ ...+++.+++++ |.
T Consensus 308 kl~~P~ednrallVmnea~~e~~~n~inFY~~K~l~kK~-~~~el~s~ln~t~sel~ttl~eY~~~~~g~~~D~fgrk~f 386 (477)
T KOG2404|consen 308 KLKCPIEDNRALLVMNEANYEAFGNNINFYMFKKLFKKY-ESAELASALNITESELKTTLEEYSKSFTGKSEDPFGRKVF 386 (477)
T ss_pred hhcCCcccceeEEEecHhHHHHHhhhhhhHhHHHHHHHh-hHHHHHHHhCCCHHHHHHHHHHHHHhhcCCCCCcCCCccc
Confidence 5322111233444443322222211 11 112222222222 11
Q ss_pred -------CCC---eeeeeeeceecCceEECCCCC------cccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHH
Q 006387 423 -------SQP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQ 486 (647)
Q Consensus 423 -------~~~---i~v~p~~~~~~GGi~vD~~~~------T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~ 486 (647)
+++ -+|.|..||+|||++||+..| ..|.|||||||++ ||+||+|||+|+||.+|+||||.||+
T Consensus 387 ~~s~is~t~~v~vgeVvPvvHyTMGGvkid~ksrVi~~ng~vi~GlfAAGEvs-GGvHGaNRLgGsSLLeCVVFGr~Ag~ 465 (477)
T KOG2404|consen 387 PVSDISPTETVYVGEVVPVVHYTMGGVKIDEKSRVIDKNGKVIVGLFAAGEVS-GGVHGANRLGGSSLLECVVFGRTAGK 465 (477)
T ss_pred cCCCCCccceeEEEEEeeeEEEeccceEechhhhhhccCCcEeeeeeEcceec-cccccccccCcccceeeeeecccchh
Confidence 122 377899999999999998877 4688999999998 99999999999999999999999987
Q ss_pred H
Q 006387 487 P 487 (647)
Q Consensus 487 ~ 487 (647)
.
T Consensus 466 ~ 466 (477)
T KOG2404|consen 466 A 466 (477)
T ss_pred h
Confidence 3
No 38
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=100.00 E-value=3.7e-48 Score=427.23 Aligned_cols=374 Identities=30% Similarity=0.454 Sum_probs=289.5
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeec-------CCCCCHHHHHHHHHHhcccC
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVAGAYL 157 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~-------~~~d~~~~~~~~~~~~g~~~ 157 (647)
..++||||||+|+||++||+.|++.| +|+||||....+|++.++.|+++... ...|+++.++.++++.+.+.
T Consensus 59 ~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~ 138 (506)
T PRK06481 59 KDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGT 138 (506)
T ss_pred cccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCC
Confidence 45799999999999999999999999 99999999998888888888886543 23678889999999999999
Q ss_pred CCHHHHHHHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccC--CchHHHHHHHHHHHHcCCCcEEEcc
Q 006387 158 CDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAAD--MTGREIERALLEAVVSDPNISVFEH 235 (647)
Q Consensus 158 ~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~--~~g~~~~~~L~~~~~~~~gv~i~~~ 235 (647)
.|+++++.+++++.+.++||+++|++|... ...++++.+|..++.+ ..|..++..|.+.+++ .|++++.+
T Consensus 139 ~d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~-------~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~-~gv~i~~~ 210 (506)
T PRK06481 139 NDKALLRYFVDNSASAIDWLDSMGIKLDNL-------TITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQE-RKIPLFVN 210 (506)
T ss_pred CCHHHHHHHHhccHHHHHHHHHcCceEeec-------ccCCCCCCCceeccCCCCCChHHHHHHHHHHHHH-cCCeEEeC
Confidence 999999999999999999999999998642 1223444555544432 3467788999998887 49999999
Q ss_pred eEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccccc------C-C-----CCCCCCCCcchHHHHHHH
Q 006387 236 HFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI------Y-P-----STTNPLVATGDGMAMAHR 303 (647)
Q Consensus 236 ~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~------~-~-----~~~~~~~~tGdg~~~a~~ 303 (647)
+.+++|+.+ ++ +|+||.+.. .+++...|+||.||+||||++.. | + .+.++..++|||+.|+.+
T Consensus 211 t~v~~l~~~-~g---~V~Gv~~~~-~~g~~~~i~a~~VVlAtGG~~~n~~m~~~~~p~~~~~~~~~~~g~tGdGi~ma~~ 285 (506)
T PRK06481 211 ADVTKITEK-DG---KVTGVKVKI-NGKETKTISSKAVVVTTGGFGANKDMIAKYRPDLKGYVTTNQEGSTGDGIKMIEK 285 (506)
T ss_pred CeeEEEEec-CC---EEEEEEEEe-CCCeEEEEecCeEEEeCCCcccCHHHHHHhCccccCCccCCCCCCChHHHHHHHH
Confidence 999999875 55 799998764 34566689999999999999864 1 1 244677899999999999
Q ss_pred cCCeecCccccccccccccCCCCCCCCCCCCCccceeeecccCCCceEEeCCCCccccccccccccCchhHHHHHHHHHH
Q 006387 304 AQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQL 383 (647)
Q Consensus 304 aGa~l~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~l~~rd~~~~~i~~~~ 383 (647)
+||.+.+|+++|+||+..... .+++.+.+++.++++||.+|+||++++ .+++.+++++..+.
T Consensus 286 aGA~~~~~~~~~~~p~~~~~~------------~~~~~~~~~~~~~i~Vn~~G~RF~nE~------~~~~~~~~~~~~~~ 347 (506)
T PRK06481 286 LGGTTVDMDQIQIHPTVQQSK------------SYLIGEAVRGEGAILVNQKGKRFGNEL------DTRDKVSAAINKLP 347 (506)
T ss_pred cCCCccCchhhhhCCCccCCC------------cceehhhccCCceEEECCCCCCCCCCC------ccHHHHHHHHHhCc
Confidence 999999999999998754321 344555667788999999999999854 45666666655432
Q ss_pred HhcCCCeEEEecCCCC----hhHHH-----hhChhHHHHHHHcC--------------------CC------------CC
Q 006387 384 KKRNEKYVLLDISHKP----TEKIL-----SHFPNIAAECLKYG--------------------LD------------IT 422 (647)
Q Consensus 384 ~~~~~~~v~ld~~~~~----~~~l~-----~~~~~~~~~~~~~G--------------------~d------------~~ 422 (647)
+...++++|....+ .+... .+.+++.+++++.| .| +.
T Consensus 348 --~~~~~~i~D~~~~~~~~~~~~~~~~g~~~kadTleeLA~~~gid~~~L~~tv~~yN~~~~~g~D~~fgr~~~~~~~i~ 425 (506)
T PRK06481 348 --EKYAYVVFDSGVKDRVKAIAQYEEKGFVEEGKTIDELAKKINVPAETLTKTLDTWNKAVKNKKDEAFGRTTGMDNDLS 425 (506)
T ss_pred --CCcEEEEECHHHHhhhhhhHHHHhCCcEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCc
Confidence 12235566643211 00000 01122333322222 22 23
Q ss_pred CCC---eeeeeeeceecCceEECCCCC------cccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhh
Q 006387 423 SQP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 493 (647)
Q Consensus 423 ~~~---i~v~p~~~~~~GGi~vD~~~~------T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~ 493 (647)
+.| +++.|..|+++|||+||+++| ++|||||||||++ +|+||.||++|+++++|++|||+||++|+++++
T Consensus 426 ~~PfYai~~~p~~~~T~GGl~in~~~qVld~~g~pI~GLYAaGe~~-gg~~g~~~~~G~~l~~~~~~GriAg~~aa~~~~ 504 (506)
T PRK06481 426 TGPYYAIKIAPGIHYTMGGVKINTNTEVLKKDGSPITGLYAAGEVT-GGLHGENRIGGNSVADIIIFGRQAGTQSAEFAK 504 (506)
T ss_pred CCCEEEEEEecceeecccCeEECCCceEEcCCCCEeCCeeeceecc-ccCCCCCCCchhhHHHHHHHHHHHHHHHHHhhh
Confidence 455 788999999999999999998 6999999999998 899999999999999999999999999998864
No 39
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=100.00 E-value=9.6e-46 Score=440.73 Aligned_cols=393 Identities=29% Similarity=0.423 Sum_probs=299.1
Q ss_pred CccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecC-------CCCCHHHHHHHHHHhc-c
Q 006387 85 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC-------PSDSVESHMQDTIVAG-A 155 (647)
Q Consensus 85 ~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~-------~~d~~~~~~~~~~~~g-~ 155 (647)
.+.++||||||+|.||++||++|++.| +|+||||....+|++.+++||+.+..+ ..|+++.+..+++..+ .
T Consensus 406 ~t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~~s~ggi~~~~t~~q~~~gi~D~~~~~~~d~~~~~~~ 485 (1167)
T PTZ00306 406 GSLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSAKATSGINGWGTRAQAKQDVLDGGKFFERDTHLSGKG 485 (1167)
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchhhcccccccCCchhhhhhcccccHHHHHHHHHHhccC
Confidence 356799999999999999999999999 999999999999999888888876543 3578888888887765 5
Q ss_pred cCCCHHHHHHHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCC-------chHHHHHHHHHHHHcC-
Q 006387 156 YLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADM-------TGREIERALLEAVVSD- 227 (647)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~-------~g~~~~~~L~~~~~~~- 227 (647)
+.+|+++++.+++++++.++||.++|++|... ...++++.+|..+..+. .|..++..|.+.+++.
T Consensus 486 ~~~d~~lv~~~~~~s~e~idwL~~~Gv~f~~~-------~~~gg~~~~r~~~~~~~~~g~~~~~G~~i~~~l~~~~~~~~ 558 (1167)
T PTZ00306 486 GHCDPGLVKTLSVKSADAISWLSSLGVPLTVL-------SQLGGASRKRCHRAPDKKDGTPVPIGFTIMRTLEDHIRTKL 558 (1167)
T ss_pred CCCCHHHHHHHHHhhHHHHHHHHHcCCCceee-------eccCCCCCCceeecCcccCCCcCCcHHHHHHHHHHHHHhhc
Confidence 78999999999999999999999999999641 23466777776654321 2667788888777642
Q ss_pred -CCcEEEcceEEEEEEecCC----C-CCCeEEEEEEEec--CCCeEEEEEcCeEEECCCcccccC----------C----
Q 006387 228 -PNISVFEHHFAIDLLTTLD----G-PDAVCHGVDTLNV--ETQEVVRFISKVTLLASGGAGHIY----------P---- 285 (647)
Q Consensus 228 -~gv~i~~~~~v~~l~~~~~----g-~~~~v~Gv~~~~~--~~g~~~~i~Ak~VVlAtGg~~~~~----------~---- 285 (647)
.||+|++++++++|+.+++ | ...+|+||.+.+. .+|+.+.|+||+||||||||+++. +
T Consensus 559 ~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~~N~e~~~m~~~y~p~~~~ 638 (1167)
T PTZ00306 559 SGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFSNDHTPNSLLREYAPQLSG 638 (1167)
T ss_pred cCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCcccCccHHHHHHHhCccccC
Confidence 5999999999999998742 1 0127999999764 267888999999999999999743 1
Q ss_pred -CCCCCCCCcchHHHHHHHcCCeecCccccccccccccCCCCCCCCCCCCCccceeeecccCCCceEEeCCCCccccccc
Q 006387 286 -STTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYD 364 (647)
Q Consensus 286 -~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~ 364 (647)
.+++++.+||||+.||+++||.+.+|+++|+||+.+..+..+..+ ..++..+.+++.|+++||.+|+||+++
T Consensus 639 ~~~~~~~~~tGDGi~mA~~aGA~l~~m~~~~~~p~~~~~~~~~~~~-----~~~~~~~~~~~~g~ilVN~~GkRF~nE-- 711 (1167)
T PTZ00306 639 FPTTNGPWATGDGVKLARKLGATLVDMDKVQLHPTGLIDPKDPSNR-----TKYLGPEALRGSGGVLLNKNGERFVNE-- 711 (1167)
T ss_pred CCCCCCCCcccHHHHHHHHcCCcCcCccceeEcceeecCCCCCCCc-----ccceeeehhcCCceEEECCCCCCcccc--
Confidence 244667899999999999999999999999999865432211101 134455666778899999999999974
Q ss_pred cccccCchhHHHHHHHHHHHhc----CCCeEE--EecCCCC---hh---------HHHhhChhHHHHHHHcCCCC-----
Q 006387 365 ERAELAPRDVVARSIDDQLKKR----NEKYVL--LDISHKP---TE---------KILSHFPNIAAECLKYGLDI----- 421 (647)
Q Consensus 365 ~~~~l~~rd~~~~~i~~~~~~~----~~~~v~--ld~~~~~---~~---------~l~~~~~~~~~~~~~~G~d~----- 421 (647)
+.+++.+++++..+.... +...+| +|..... .. .+..+.+++.+++++.|+|+
T Consensus 712 ----~~~~~~~~~ai~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~~~~~~~g~~~kADTleELA~~~gid~~~L~a 787 (1167)
T PTZ00306 712 ----LDLRSVVSQAIIAQGNEYPGSGGSKFAYCVLNEAAAKLFGKNSLGFYWKRLGLFQRVDDVKGLAKLIGCPVENLHR 787 (1167)
T ss_pred ----cCcHHHHHHHHHhhcccccccccCceEEEEEchHHHhhhhhhhhhhhhhhcCeEEEeCCHHHHHHHhCCCHHHHHH
Confidence 456778888887665321 111233 3432110 00 00113456666666666553
Q ss_pred ----------------------------CCCC---eeeeeeeceecCceEECCCCC--------------cccCceeecc
Q 006387 422 ----------------------------TSQP---IPVVPAAHYMCGGVRAGLQGE--------------TNVRGLYVAG 456 (647)
Q Consensus 422 ----------------------------~~~~---i~v~p~~~~~~GGi~vD~~~~--------------T~ipGLyAaG 456 (647)
.+.| +++.|..++|+||+.||.++| ++||||||||
T Consensus 788 TV~rYN~~~~~G~d~~f~~~~~~p~~~~~~~PfYA~~~~p~~~~T~GGl~in~~~qVLd~dg~~~~~~~~~pIpGLYAAG 867 (1167)
T PTZ00306 788 TLETYERLSTKKVACPLTGKVVFPCVVGTQGPYYVAFVTPSIHYTMGGCLISPSAEMQMEDNSVNIFEDRRPILGLFGAG 867 (1167)
T ss_pred HHHHHHHHHhcCCCCccCCCccCCCcCCCCCCEEEEEEecccccccCCeEECCCceEEeccCccccccCCceeCceEecc
Confidence 1234 378889999999999998766 3799999999
Q ss_pred cccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhccc
Q 006387 457 EVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTS 496 (647)
Q Consensus 457 e~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~~ 496 (647)
|++ +|+||.+|++|+++++|++||++||++|++++++..
T Consensus 868 e~~-gg~~g~~y~gG~sl~~a~~fGriAG~~aa~~~~~~~ 906 (1167)
T PTZ00306 868 EVT-GGVHGGNRLGGNSLLECVVFGKIAGDRAATILQKKK 906 (1167)
T ss_pred eec-cccccCCCCchhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 998 799999999999999999999999999999987653
No 40
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=100.00 E-value=1.1e-44 Score=393.31 Aligned_cols=365 Identities=37% Similarity=0.533 Sum_probs=285.2
Q ss_pred CEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecC-------CCCCHHHHHHHHHHhcccCCCHH
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC-------PSDSVESHMQDTIVAGAYLCDDE 161 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~-------~~d~~~~~~~~~~~~g~~~~~~~ 161 (647)
||||||+|+|||+||+.|+++| +|+||||.+..+|++.++.|++..... ..|+++.++.++++.+.+..+++
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDPD 80 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-HH
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccccccccc
Confidence 8999999999999999999999 999999999988888888887776542 24789999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCcccc-ceee-ccCC------chHHHHHHHHHHHHcCCCcEEE
Q 006387 162 TVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHH-RIVH-AADM------TGREIERALLEAVVSDPNISVF 233 (647)
Q Consensus 162 ~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~-r~~~-~~~~------~g~~~~~~L~~~~~~~~gv~i~ 233 (647)
+++.+++++.+.++||.++|++|..+.++.+.....+.+... +.+. ..+. .+..++..|.+.+++. |++|+
T Consensus 81 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~-gv~i~ 159 (417)
T PF00890_consen 81 LVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEA-GVDIR 159 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHT-TEEEE
T ss_pred hhhhhhhcccceehhhhhhcccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhhc-Ceeee
Confidence 999999999999999999999999877776666677777666 5555 3343 7899999999999985 89999
Q ss_pred cceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccc----------cCCCCCCCCCCcchHHHHHHH
Q 006387 234 EHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH----------IYPSTTNPLVATGDGMAMAHR 303 (647)
Q Consensus 234 ~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~----------~~~~~~~~~~~tGdg~~~a~~ 303 (647)
.++++++|+++ ++ +|+||.+.+..+|+.+.|+|++|||||||++. .+..+.+++.++|||+.|+++
T Consensus 160 ~~~~~~~Li~e-~g---~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~~~~~~~~~~~~~~~~~~~~~~~Gdg~~ma~~ 235 (417)
T PF00890_consen 160 FNTRVTDLITE-DG---RVTGVVAENPADGEFVRIKAKAVILATGGFGGELLRQYYPPGPYAMTTGPPGNTGDGIAMALR 235 (417)
T ss_dssp ESEEEEEEEEE-TT---EEEEEEEEETTTCEEEEEEESEEEE----BGGHHHHHH-GGGGSSSBSSGTTTSSHHHHHHHH
T ss_pred ccceeeeEEEe-CC---ceeEEEEEECCCCeEEEEeeeEEEeccCccccccccccccccccccccCCCCcccCchhhhhc
Confidence 99999999997 66 89999999878899999999999999999997 445666778999999999999
Q ss_pred cCCeecC--ccccccccccccCCCCCCCCCCCCCccceeeecccCCCceEEeCCCCccccccccccccCchhHHHHHHH-
Q 006387 304 AQAVISN--MEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSID- 380 (647)
Q Consensus 304 aGa~l~~--~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~l~~rd~~~~~i~- 380 (647)
+||.+.+ |++.+++|..+..... + ...++...+...++++||.+|+||+++ ..+++.+..++.
T Consensus 236 aGa~~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~g~i~vn~~G~Rf~~e------~~~~~~~~~~~~~ 301 (417)
T PF00890_consen 236 AGAALSNDPMEFIQWGPPSVPGIRD---P-----SGILITEALPGPGGIWVNADGERFMNE------DASYDDVAQAILQ 301 (417)
T ss_dssp TTCCEESTTTTCEEEEEEEETSTCC---T-----TTSBHHTHHHHTT-EEEETTSSBTHGG------GS-HHHHHHHHH-
T ss_pred cCccccCccchhhccCCcccccccc---c-----ccchhhhhhccceeEEEcCCCcCcccc------cccccHHHHHHHH
Confidence 9999999 9999999887753211 0 012233455667899999999999964 456677777777
Q ss_pred HHHHhcCC-CeEEEecCC-CChhHHHhhChhHHHHHHHcCCC--------CCCCCe-------eeeeeeceecCceEECC
Q 006387 381 DQLKKRNE-KYVLLDISH-KPTEKILSHFPNIAAECLKYGLD--------ITSQPI-------PVVPAAHYMCGGVRAGL 443 (647)
Q Consensus 381 ~~~~~~~~-~~v~ld~~~-~~~~~l~~~~~~~~~~~~~~G~d--------~~~~~i-------~v~p~~~~~~GGi~vD~ 443 (647)
.++..... ..+|+++.+ ++.+.|.+.+..+...+.. |.| +.+.+. ++.|..++++|||+||+
T Consensus 302 ~~~~~~~~~~~~~~~~~~g~~~~~L~~tv~~yn~~~~~-g~d~~f~~~~~~~~~~~~~pfya~~~~~~~~~t~GGl~vd~ 380 (417)
T PF00890_consen 302 REIREPRGDAYVYLIFDGGIDPEGLAATVERYNEECEA-GVDEDFGRGIDPLKRPIPGPFYAVEVTPGIHYTMGGLKVDE 380 (417)
T ss_dssp HHHHTTTSECBEEEEETTTSHHHHHHHHCHHHHHHHHH-TSTTTTS-STTTTTSEEESSEEEEEEEEEEEEES-EEEBET
T ss_pred HhhhcccCCcceEEeeccccChhhhhhhhhHHHHhhhc-ccccccccccccccCcccccccccccccccceeeEEeeeCc
Confidence 34444433 467898887 7888888878766655543 333 333433 48899999999999999
Q ss_pred CCCc------ccCceeecccccCCCCCCCCccchhhh
Q 006387 444 QGET------NVRGLYVAGEVACTGLHGANRLASNSL 474 (647)
Q Consensus 444 ~~~T------~ipGLyAaGe~a~~g~~Ga~rl~g~sl 474 (647)
++|+ +|||||||||++|+++||+++.+|++|
T Consensus 381 ~~~vl~~~g~pIpGLyAaGe~~gg~~~g~~~~gG~~l 417 (417)
T PF00890_consen 381 DAQVLDADGQPIPGLYAAGEAAGGGVHGAYRGGGNGL 417 (417)
T ss_dssp TSEEETTTCEEEEEEEE-SCCEEESSSTTS--TTHHH
T ss_pred CcCccCCCCCEeCCEEEEEcccccccCCccCCcccCC
Confidence 9997 999999999999789999999999986
No 41
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=100.00 E-value=4.3e-45 Score=398.55 Aligned_cols=366 Identities=35% Similarity=0.503 Sum_probs=278.9
Q ss_pred CEEEECcchHHHHHHHHHHhcC--CeEEEEecCCCCCCccccCCCeeeecC-------CCCCHHHHHHHHHHhcccCCCH
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESNTNYAQGGVSAVLC-------PSDSVESHMQDTIVAGAYLCDD 160 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~~~~~G~t~~a~Ggi~~~~~-------~~d~~~~~~~~~~~~g~~~~~~ 160 (647)
||||||+|+||++||+.|+++| +|+||||....+|++.++.|+++.... ..++++.+++++++.+.+.+++
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 8999999999999999999998 899999999988998888888876542 3578899999999988889999
Q ss_pred HHHHHHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccC--CchHHHHHHHHHHHHcCCCcEEEcceEE
Q 006387 161 ETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAAD--MTGREIERALLEAVVSDPNISVFEHHFA 238 (647)
Q Consensus 161 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~--~~g~~~~~~L~~~~~~~~gv~i~~~~~v 238 (647)
++++.+++.+.+.++||. .++.+.... ....+++..+|..++.+ ..+..+...|.+.+++ .|++++.+++|
T Consensus 81 ~l~~~~~~~~~~~i~wl~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~-~gv~i~~~~~v 153 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQ-DGVGARLDD-----LIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKK-EGIDTRLNSKV 153 (439)
T ss_pred HHHHHHHhccHHHHHHHH-hCCCeeecc-----ccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHH-cCCEEEeCCEe
Confidence 999999999999999999 666664321 12234455555554433 4678899999999987 49999999999
Q ss_pred EEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccc------cC-C-----CCCCCCCCcchHHHHHHHcCC
Q 006387 239 IDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH------IY-P-----STTNPLVATGDGMAMAHRAQA 306 (647)
Q Consensus 239 ~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~------~~-~-----~~~~~~~~tGdg~~~a~~aGa 306 (647)
++|+.++++ +|+||.+.+ .+++...+.||.||+|||+++. .| | .+.+++.++|||+.|++++||
T Consensus 154 ~~l~~~~~g---~v~Gv~~~~-~~g~~~~~~a~~VVlAtGg~~~n~~m~~~~~p~~~~~~~~~~~~~tGdG~~ma~~aGa 229 (439)
T TIGR01813 154 EDLIQDDQG---TVVGVVVKG-KGKGIYIKAAKAVVLATGGFGSNKEMIAKYDPTLKGLGSTNQPGATGDGLLMAEKIGA 229 (439)
T ss_pred eEeEECCCC---cEEEEEEEe-CCCeEEEEecceEEEecCCCCCCHHHHHHhCCCcCCCCcCCCCCCchHHHHHHHHcCC
Confidence 999987555 799998875 4566667899999999999997 23 2 345677899999999999999
Q ss_pred eecCccccccccccccCCCCCCCCCCCCCccceeeecccCCCceEEeCCCCccccccccccccCchhHHHHHHHHHHHhc
Q 006387 307 VISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKR 386 (647)
Q Consensus 307 ~l~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~l~~rd~~~~~i~~~~~~~ 386 (647)
.+.+|+++|+||......+ .++....++..++++||.+|+||+++. .+++.+++++..+..
T Consensus 230 ~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~i~vn~~G~RF~~E~------~~~~~~~~~~~~~~~-- 290 (439)
T TIGR01813 230 ALVDMDYIQAHPTASPDEG-----------GFLISEAVRGYGAILVNKTGERFMNEL------ATRDTVSDAILAQPG-- 290 (439)
T ss_pred CccCCchhheecccccCCc-----------ceeehhhcccCcEEEECCCCCCccccC------CcHHHHHHHHHhCCC--
Confidence 9999999999987553211 233444556678899999999999853 455666666654431
Q ss_pred CCCeEEEecCCCCh----hHH-----HhhChhHHHHHHHc--------------------CCCC------------CCCC
Q 006387 387 NEKYVLLDISHKPT----EKI-----LSHFPNIAAECLKY--------------------GLDI------------TSQP 425 (647)
Q Consensus 387 ~~~~v~ld~~~~~~----~~l-----~~~~~~~~~~~~~~--------------------G~d~------------~~~~ 425 (647)
...++++|...... +.. ..+.+++.+++++. |.|+ .+.|
T Consensus 291 ~~~~~i~d~~~~~~~~~~~~~~~~g~~~~adtleeLa~~~g~~~~~l~~tv~~yN~~~~~g~D~~f~r~~~~~~~i~~~P 370 (439)
T TIGR01813 291 KSAYLIFDDDVYKKAEMVDNYYRLGVAYKGDSLEELAKQFGIPAAALKKTVKDYNEYVASGKDTPFGRPMDMPDDLSKSP 370 (439)
T ss_pred CceEEEECHHHHHhhhhHHHHHhcCcEEEeCCHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCCCCC
Confidence 11334455321100 000 00122333333322 4333 2456
Q ss_pred ---eeeeeeeceecCceEECCCCC------cccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHH
Q 006387 426 ---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQ 486 (647)
Q Consensus 426 ---i~v~p~~~~~~GGi~vD~~~~------T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~ 486 (647)
+++.|..++++|||+||+++| ++|||||||||++ +|+||.+|++|+++++|++||++||+
T Consensus 371 fya~~~~~~~~~t~GGl~~d~~~~vl~~~g~~IpGLyAaG~~~-gg~~g~~~~~G~~~~~~~~~GriAg~ 439 (439)
T TIGR01813 371 YYAIKVTPGVHHTMGGVKINTKAEVLDAQGKPIPGLFAAGEVT-GGVHGANRLGGNAIADCIVFGRIAGE 439 (439)
T ss_pred EEEEEEEcCccccccCeEECCCCeEECCCCCEecccEEeeecc-cccCCCCCCchhhhhhhhhhhHhhcC
Confidence 789999999999999999999 5899999999998 79999999999999999999999984
No 42
>PRK07121 hypothetical protein; Validated
Probab=100.00 E-value=1.8e-43 Score=390.21 Aligned_cols=371 Identities=24% Similarity=0.287 Sum_probs=270.5
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeee--------cCCCCCHHHHHHHHHHhccc
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAV--------LCPSDSVESHMQDTIVAGAY 156 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~--------~~~~d~~~~~~~~~~~~g~~ 156 (647)
+.++||||||+|.||++||++|++.| +|+||||....+|++.++.|.+... .+..|+++.+++++.+.+.+
T Consensus 18 ~~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s~~sgG~~~~~~g~~~q~~~g~~d~~~~~~~~~~~~~~~ 97 (492)
T PRK07121 18 DDEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATALSGGVIYLGGGTAVQKAAGFEDSPENMYAYLRVAVGP 97 (492)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcccccCeEEEeCCCcHHHHhcCCCCCHHHHHHHHHHHhCC
Confidence 45799999999999999999999999 9999999998888887765544322 13368899999888888888
Q ss_pred CCCHHHHHHHHHHhHHHHHHHHHcCCCcccCCCCCcc--------ccccC--------C--ccccceeec---cCC-chH
Q 006387 157 LCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLH--------LAREG--------G--HSHHRIVHA---ADM-TGR 214 (647)
Q Consensus 157 ~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~--------~~~~g--------g--~~~~r~~~~---~~~-~g~ 214 (647)
.+|+++++.+++++.+.++||+++|++|.....+.+. ....+ . +..+|.... ... .+.
T Consensus 98 ~~d~~l~~~~~~~s~~~i~wl~~~Gv~f~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 177 (492)
T PRK07121 98 GVDEEKLRRYCEGSVEHFDWLEGLGVPFERSFFPEKTSYPPNDEGLYYSGNEKAWPFAEIAKPAPRGHRVQGPGDSGGGA 177 (492)
T ss_pred CCCHHHHHHHHHccHHHHHHHHHcCcEEEeccCCCcccCCCCCcccccchhhcchhhhhccCCcccceecCCCCCCCchH
Confidence 9999999999999999999999999999753221110 00000 0 111222221 111 478
Q ss_pred HHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEc-CeEEECCCccccc------C-C-
Q 006387 215 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFIS-KVTLLASGGAGHI------Y-P- 285 (647)
Q Consensus 215 ~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~A-k~VVlAtGg~~~~------~-~- 285 (647)
.+...|.+.+++ .|++|+.++++++|+.++++ +|+||.+.+ +++.+.|+| |.|||||||++.. | |
T Consensus 178 ~~~~~L~~~~~~-~gv~i~~~~~v~~l~~~~~g---~v~Gv~~~~--~~~~~~i~a~k~VVlAtGg~~~N~em~~~~~p~ 251 (492)
T PRK07121 178 MLMDPLAKRAAA-LGVQIRYDTRATRLIVDDDG---RVVGVEARR--YGETVAIRARKGVVLAAGGFAMNREMVARYAPA 251 (492)
T ss_pred HHHHHHHHHHHh-CCCEEEeCCEEEEEEECCCC---CEEEEEEEe--CCcEEEEEeCCEEEECCCCcCcCHHHHHHhCCc
Confidence 899999998887 49999999999999987555 799998853 456678999 9999999999862 1 1
Q ss_pred ----CCCCCCCCcchHHHHHHHcCCeecCccccccccccccCCCCCCCCCCCCCccceeeecccCCCceEEeCCCCcccc
Q 006387 286 ----STTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMP 361 (647)
Q Consensus 286 ----~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~ 361 (647)
.+.+++.+||||+.|++++||.+.+|+++|+++.... | .. + .++++||.+|+||++
T Consensus 252 ~~~~~~~~~~~~tGdG~~ma~~aGa~l~~~~~~~~~~~~~~-------~------~~-----~--~~~i~Vn~~G~RF~n 311 (492)
T PRK07121 252 YAGGLPLGTTGDDGSGIRLGQSAGGATAHMDQVFAWRFIYP-------P------SA-----L--LRGILVNARGQRFVN 311 (492)
T ss_pred ccCCcCCCCCCCccHHHHHHHHhCCccccCchhhhhCcccC-------C------CC-----c--CCeEEECCCCCEeec
Confidence 3445678999999999999999999999887543211 1 00 1 257999999999998
Q ss_pred ccccccccCchhHHHHHHHHHHHhcCCCeEEEecCCCChh------HH------HhhChhHHHHHHHcCCCCC-------
Q 006387 362 LYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTE------KI------LSHFPNIAAECLKYGLDIT------- 422 (647)
Q Consensus 362 ~~~~~~~l~~rd~~~~~i~~~~~~~~~~~v~ld~~~~~~~------~l------~~~~~~~~~~~~~~G~d~~------- 422 (647)
+.. +++.++.++..+. ++..++++|....... .. ..+.+++.+++++.|+|+.
T Consensus 312 E~~------~~~~~~~~~~~~~--~~~~~~i~D~~~~~~~~~~~~~~~~~~~~~~~kadtleeLA~~~gid~~~l~~tv~ 383 (492)
T PRK07121 312 EDT------YGARIGQFILEQP--GGTAYLIVDEALFEEARAQLRPQIDGRTPGAWKAETVEELARKLGIPPGGLQATVD 383 (492)
T ss_pred CCC------cHHHHHHHHHhcc--CCcEEEEEeHHHHhhhccccccccccccCcccccCCHHHHHHHhCCCHHHHHHHHH
Confidence 642 3444555544321 1223455554321100 00 0123455555555555431
Q ss_pred -------------------------CCC---eeeee----eeceecCceEECCC-CC------cccCceeecccccCCCC
Q 006387 423 -------------------------SQP---IPVVP----AAHYMCGGVRAGLQ-GE------TNVRGLYVAGEVACTGL 463 (647)
Q Consensus 423 -------------------------~~~---i~v~p----~~~~~~GGi~vD~~-~~------T~ipGLyAaGe~a~~g~ 463 (647)
+.| +++.| ..++|+||+.||++ +| ++|||||||||++ +|+
T Consensus 384 ~yN~~~~~G~D~~f~r~~~~l~pi~~~PfYa~~~~~~~~~~~~~T~GGl~id~~~~qVld~~g~pI~GLYAaG~~~-gg~ 462 (492)
T PRK07121 384 AYNRAAAGGEDPPFHKQPEWLRPLDTGPFAAIDLSLGKAPTPGFTLGGLRVDEDTGEVLRADGAPIPGLYAAGRCA-SGI 462 (492)
T ss_pred HHHHHhhcCCCcccCCCcccccccccCCeEEEEEecccCCcceeeccCeeECCCcceEECCCCCCcCceEeccccc-ccC
Confidence 122 34444 89999999999999 98 4799999999997 799
Q ss_pred CCCCccchhhhHHHHHHHHHHHHHHHHh
Q 006387 464 HGANRLASNSLLEALVFARRAVQPSIDH 491 (647)
Q Consensus 464 ~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~ 491 (647)
||.+|++|+++++|++|||+||++|++.
T Consensus 463 ~g~~y~~G~~l~~~~~~GriAg~~aa~~ 490 (492)
T PRK07121 463 ASNGYVSGLSLADCSFFGRRAGRHAAAR 490 (492)
T ss_pred CCCCCCCccccchhHHHHHHHHHHHHhh
Confidence 9999999999999999999999998764
No 43
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-42 Score=383.95 Aligned_cols=378 Identities=21% Similarity=0.246 Sum_probs=270.7
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCC-Ceeeec-------CCCCCHHHHHHHHHHhccc
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQG-GVSAVL-------CPSDSVESHMQDTIVAGAY 156 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~G-gi~~~~-------~~~d~~~~~~~~~~~~g~~ 156 (647)
+.++||||||+| ||++||++|++.| +|+||||....+|+|.++.| |+.... +..|+++..++++......
T Consensus 5 d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~~~~g~g~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 83 (513)
T PRK12837 5 DEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTAYSGGGGMWFPCNPVLRRAGTDDTIEDALEYYHAVVGD 83 (513)
T ss_pred CCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcceecCCCceeccCCChhhhhcCcchHHHHHHHHHHHHhcc
Confidence 457999999999 9999999999999 99999999888888877665 454321 1246677666666666666
Q ss_pred CCCHHHHHHHHHHhHHHHHHHHH-cCCCcccCC----CCCccccccCCc--cccc------------eee----------
Q 006387 157 LCDDETVRVVCTEGPDRIRELIA-IGASFDRGE----DGNLHLAREGGH--SHHR------------IVH---------- 207 (647)
Q Consensus 157 ~~~~~~~~~~~~~~~~~i~~l~~-~Gv~~~~~~----~g~~~~~~~gg~--~~~r------------~~~---------- 207 (647)
..++++++.+++++.+.++||++ .|++|.... .+.......+++ ..++ .++
T Consensus 84 ~~~~~l~~~~~~~s~~~i~wl~~~~Gv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (513)
T PRK12837 84 RTPRDLQETYVRGGAPLIEYLEQDEHFEFAELPWPDYFGKAPKARADGQRHIVPKPLPAAALGELREQIRGPLDTERLGA 163 (513)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhCCCceeeecCCCCcCCCCCCcccCCcceeecCCCChHHhchhHHhccCccchhhhcc
Confidence 78999999999999999999987 599986421 110000000110 0000 000
Q ss_pred c-cC--CchHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcC-eEEECCCccccc
Q 006387 208 A-AD--MTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISK-VTLLASGGAGHI 283 (647)
Q Consensus 208 ~-~~--~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak-~VVlAtGg~~~~ 283 (647)
. .. ..|..++..|.+.+.++.|++|+.++++++|+.+ ++ +|+||++.. +|+.+.|+|+ .|||||||++++
T Consensus 164 ~~~~~~~~G~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~-~g---~v~Gv~~~~--~g~~~~i~A~k~VIlAtGG~~~n 237 (513)
T PRK12837 164 PPPDYLVGGRALIGRFLAALARFPNARLRLNTPLVELVVE-DG---RVVGAVVER--GGERRRVRARRGVLLAAGGFEQN 237 (513)
T ss_pred CCCCcccccHHHHHHHHHHHHhCCCCEEEeCCEEEEEEec-CC---EEEEEEEEE--CCcEEEEEeCceEEEeCCCccCC
Confidence 0 00 1366788888888776669999999999999986 56 899998753 5777789995 899999999875
Q ss_pred ------CC------CCCCCCCCcchHHHHHHHcCCeecCccccccccccccCCCCCCCCCCCCCccceeeecccCCCceE
Q 006387 284 ------YP------STTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGIL 351 (647)
Q Consensus 284 ------~~------~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~ 351 (647)
|. .+.+++.+||||+.||+++||.+.+|+++|++|......+. . ...++..++++
T Consensus 238 ~~m~~~~~~~~~~~~~~~~~~~tGDGi~ma~~aGA~l~~m~~~~~~p~~~~~~~~----------~---~~~~~~~~~i~ 304 (513)
T PRK12837 238 DDMRARYGVPGSARDTMGGPGNTGLAHQAAIAVGADTDLMDQAWWSPGLTHPDGR----------S---AFALWFTGGIF 304 (513)
T ss_pred HHHHHHhccccccCCCCCCCCCCcHHHHHHHHcCCCccccccccccceeecCCCc----------c---eeccccCceEE
Confidence 42 45677889999999999999999999999999854422110 0 11223457899
Q ss_pred EeCCCCccccccccccccCchhHHHHHHHHHHHhcCC---CeEEEecCCC-------------C-hhHHH----hhChhH
Q 006387 352 YNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNE---KYVLLDISHK-------------P-TEKIL----SHFPNI 410 (647)
Q Consensus 352 vn~~G~rf~~~~~~~~~l~~rd~~~~~i~~~~~~~~~---~~v~ld~~~~-------------~-~~~l~----~~~~~~ 410 (647)
||.+|+||+++ ..+++.+++++..+...+.. .++.+|.... . .+.+. .+.+++
T Consensus 305 Vn~~GkRF~nE------~~~~~~~~~a~~~~~~~~~~~~~~~~I~D~~~~~~~~~~~~~~~~~~~~~~~~~g~~~kaDTl 378 (513)
T PRK12837 305 VDQHGERFVNE------SAPYDRLGRAVIAEMDSGGMTLPFWMIYDDREGEVPPVKATNVSMVETAQYVAAGLWRTADTL 378 (513)
T ss_pred ECCCCCCcccC------CCcHhHHHHHHHhhcccCCCCcceEEEECchhhhccCccccCCCCcCcHHHhhcCCeeecCCH
Confidence 99999999974 45677788888776543221 2344554210 0 01111 123455
Q ss_pred HHHHHHcCCCC--------------------C-----------------------CCC---eeeeeeeceecCceEECCC
Q 006387 411 AAECLKYGLDI--------------------T-----------------------SQP---IPVVPAAHYMCGGVRAGLQ 444 (647)
Q Consensus 411 ~~~~~~~G~d~--------------------~-----------------------~~~---i~v~p~~~~~~GGi~vD~~ 444 (647)
.+++++.|+|+ + +.| +++.|..++|+||++||++
T Consensus 379 eELA~k~gid~~~L~~Tv~~yN~~~~~g~D~dFgr~~~~~~~~~~~~~~~l~~i~~~PfYA~~~~p~~~~T~GGl~in~~ 458 (513)
T PRK12837 379 EELAAKIGVPADALTATVARFNGFAAAGVDEDFGRGDEAYDRAFSGGASPLVPIDTPPFHAAAFGVSDLGTKGGLRTDTA 458 (513)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhcCCCccCCCCcchhhccccCCcccceecccCCeEEEEeccccceeCCCceECCC
Confidence 55555554442 1 122 4666778999999999999
Q ss_pred CC------cccCceeecccccCCCCCCCCccc-hhhhHHHHHHHHHHHHHHHH
Q 006387 445 GE------TNVRGLYVAGEVACTGLHGANRLA-SNSLLEALVFARRAVQPSID 490 (647)
Q Consensus 445 ~~------T~ipGLyAaGe~a~~g~~Ga~rl~-g~sl~~a~v~G~~Ag~~a~~ 490 (647)
+| ++||||||||+++ +|++|.+|++ |+++++|++|||+||++|+.
T Consensus 459 ~qVl~~~g~pIpGLYAaG~~~-gg~~g~~Y~~~G~~~~~a~~fGriAg~~aa~ 510 (513)
T PRK12837 459 ARVLDTDGRPIPGLYAAGNTM-AAVSGTTYPGGGNPIGASMLFSHLAALDMAG 510 (513)
T ss_pred ceEECCCCCEeCCceeccccc-ccccccCCCCCccchHHHHHHHHHHHHHHhc
Confidence 98 5899999999998 7999999986 89999999999999999864
No 44
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=100.00 E-value=1e-42 Score=382.59 Aligned_cols=378 Identities=22% Similarity=0.249 Sum_probs=265.7
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCC--CCCCccccCCCeeeecC-------CCCCHHHHHHHHHHhccc
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP--HESNTNYAQGGVSAVLC-------PSDSVESHMQDTIVAGAY 156 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~--~~G~t~~a~Ggi~~~~~-------~~d~~~~~~~~~~~~g~~ 156 (647)
.++||||||+|+||++||+.|++.| +|+||||... .+|++.++.| +..... ..++++.++.++++.+.+
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRN-LRCMHDAPQDVLVGAYPEEEFWQDLLRVTGG 81 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCc-eeeeCCCchhhccccccHHHHHHHHHHhhCC
Confidence 4689999999999999999999999 9999999874 5677766655 543322 235678899999998888
Q ss_pred CCCHHHHHHHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcce
Q 006387 157 LCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHH 236 (647)
Q Consensus 157 ~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~ 236 (647)
..++++++.+++.+.+.++||.++|++|.....+..... ..+..+. ..|..+...|.+.+++ .|++++.++
T Consensus 82 ~~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~------~~~~~~~--g~g~~l~~~l~~~~~~-~gv~i~~~t 152 (466)
T PRK08274 82 RTDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVA------RTNAFFW--GGGKALVNALYRSAER-LGVEIRYDA 152 (466)
T ss_pred CCCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccC------CCCeeec--CCHHHHHHHHHHHHHH-CCCEEEcCC
Confidence 999999999999999999999999999976444332110 1111111 1267888899998887 499999999
Q ss_pred EEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccccc-------CCC------CCCCCCCcchHHHHHHH
Q 006387 237 FAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI-------YPS------TTNPLVATGDGMAMAHR 303 (647)
Q Consensus 237 ~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~-------~~~------~~~~~~~tGdg~~~a~~ 303 (647)
+|++|+.+ ++ +|+||.+.+ .+++...|+||.|||||||++.. ++. +.+++.++|||+.|+++
T Consensus 153 ~v~~l~~~-~g---~v~gv~~~~-~~g~~~~i~a~~VIlAtGg~~~n~~~~~~~~~~~~~~~~~~~~~~~tGdG~~ma~~ 227 (466)
T PRK08274 153 PVTALELD-DG---RFVGARAGS-AAGGAERIRAKAVVLAAGGFESNREWLREAWGQPADNFLVRGTPYNQGDLLKALLD 227 (466)
T ss_pred EEEEEEec-CC---eEEEEEEEc-cCCceEEEECCEEEECCCCCCCCHHHHHhhcCCchhhceecCCCCcccHHHHHHHH
Confidence 99999986 55 799998753 45666679999999999998763 221 24567899999999999
Q ss_pred cCCeecCccccccccccccCCCCCCCCCCCCCccceeeecccCCCceEEeCCCCccccccccccccCch--hHHHHHHHH
Q 006387 304 AQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPR--DVVARSIDD 381 (647)
Q Consensus 304 aGa~l~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~l~~r--d~~~~~i~~ 381 (647)
+||.+.+ ++.|+||+.+.... |... ..+ ........++++||.+|+||+++... +.++ ......+..
T Consensus 228 ~Ga~~~~-~~~~~~~~~~~~~~----~~~~--~~~-~~~~~~~~~~i~vn~~G~RF~nE~~~---~~~~~~~~~~~~~~~ 296 (466)
T PRK08274 228 AGADRIG-DPSQCHAVAIDARA----PLYD--GGI-CTRIDCVPLGIVVNRDGERFYDEGED---FWPKRYAIWGRLVAQ 296 (466)
T ss_pred cCCCccC-CccceeeEeecCCC----CccC--Ccc-eeeecccceEEEEcCCCcEEEecCCc---cccchHHHHHHHHHc
Confidence 9999876 56788887553211 1000 011 11122234679999999999986432 1111 122222221
Q ss_pred HHHhcCCCeEEEecCCCCh---hHH-HhhChhHHHHHHHcCCCC----------------------------------CC
Q 006387 382 QLKKRNEKYVLLDISHKPT---EKI-LSHFPNIAAECLKYGLDI----------------------------------TS 423 (647)
Q Consensus 382 ~~~~~~~~~v~ld~~~~~~---~~l-~~~~~~~~~~~~~~G~d~----------------------------------~~ 423 (647)
+ .+...++++|...... ... ..+..++.+++++.|+|+ .+
T Consensus 297 ~--~~~~~~~i~d~~~~~~~~~~~~~~~~adtleeLA~~~gi~~~~l~~tv~~yN~~~~~g~~~~~~~d~~~~~~~~~~~ 374 (466)
T PRK08274 297 Q--PGQIAYQIFDAKAIGRFMPPVFPPIQADTLEELAEKLGLDPAAFLRTVAAFNAAVRPGPFDPTVLDDCGTEGLTPPK 374 (466)
T ss_pred C--CCceEEEEeCchhHhhcCcccCCccccCCHHHHHHHhCcCHHHHHHHHHHHHHhccccCCCcccccccccccCCCCc
Confidence 1 1111234445332110 000 001123333333333221 11
Q ss_pred ----CC--------eeeeeeeceecCceEECCCCCc------ccCceeecccccCCC-CCCCCccchhhhHHHHHHHHHH
Q 006387 424 ----QP--------IPVVPAAHYMCGGVRAGLQGET------NVRGLYVAGEVACTG-LHGANRLASNSLLEALVFARRA 484 (647)
Q Consensus 424 ----~~--------i~v~p~~~~~~GGi~vD~~~~T------~ipGLyAaGe~a~~g-~~Ga~rl~g~sl~~a~v~G~~A 484 (647)
.| +++.|..|+++||++||+++|+ +|||||||||++ +| +||+||++|++|++|++||++|
T Consensus 375 ~~~~~~i~~~Pfya~~~~p~~~~t~GGl~~d~~~~vl~~~g~~I~GLYAaGe~~-gg~~~g~~y~~g~~l~~~~~~G~ia 453 (466)
T PRK08274 375 SHWARPIDTPPFYAYPVRPGITFTYLGLKVDEDARVRFADGRPSPNLFAAGEMM-AGNVLGKGYPAGVGLTIGAVFGRIA 453 (466)
T ss_pred ccccCccCCCCeEEEEeccceeeecccEEECCCceEECCCCCCCCCceeccccc-ccccccCCCccccchhhhhhhHHHH
Confidence 12 4888999999999999999996 899999999998 67 9999999999999999999999
Q ss_pred HHHHHHhhh
Q 006387 485 VQPSIDHKK 493 (647)
Q Consensus 485 g~~a~~~~~ 493 (647)
|++|+++++
T Consensus 454 g~~aa~~~~ 462 (466)
T PRK08274 454 GEEAARHAQ 462 (466)
T ss_pred HHHHHHHhh
Confidence 999998864
No 45
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=100.00 E-value=2.1e-42 Score=383.55 Aligned_cols=382 Identities=19% Similarity=0.273 Sum_probs=268.9
Q ss_pred CccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeec-------CCCCCHHHHHHHHHHhccc
Q 006387 85 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVAGAY 156 (647)
Q Consensus 85 ~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~-------~~~d~~~~~~~~~~~~g~~ 156 (647)
.+.+|||||||+| +|++||+.+++.| +|+||||....+|++.++.|+++... +..|+++..++++.+...+
T Consensus 13 ~d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~~gG~~~~~~~~~~~~~g~~ds~e~~~~y~~~~~~~ 91 (564)
T PRK12845 13 RDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTARSGGAFWLPASPVLDEAGAGDTLERARTYLDSVVGG 91 (564)
T ss_pred CCceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccCcCCCEecCChHHHHHhCcchhHHHHHHHHHHHhCC
Confidence 3568999999999 8999999999999 99999999888999988888776542 2368999999999888888
Q ss_pred CCCHHHHHHHHHHhHHHHHHHHH-cCCCcccCCC-CCccccccCCccccceeec--------------------------
Q 006387 157 LCDDETVRVVCTEGPDRIRELIA-IGASFDRGED-GNLHLAREGGHSHHRIVHA-------------------------- 208 (647)
Q Consensus 157 ~~~~~~~~~~~~~~~~~i~~l~~-~Gv~~~~~~~-g~~~~~~~gg~~~~r~~~~-------------------------- 208 (647)
..++++++.+++++++.++||++ .|+.|..... ..+.....++....|.+++
T Consensus 92 ~~~~~li~~~~~~~~~~i~wl~~~~gv~~~~~~~~~d~~~~~~g~~~~gr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 171 (564)
T PRK12845 92 SAPAERSAAFLDNGSATVDMLRRTTPMRFFWARGYSDYHPEQPGGSAAGRTCECRPFDTAVLGEYRPRLRPGVMEVSIPM 171 (564)
T ss_pred CCCHHHHHHHHHhhHHHHHHHHhcCCceEEECCCCCCCCCCCCCCCCCCCcccCCCCChhHhhhHHHhcCCccccccccc
Confidence 89999999999999999999998 6777632110 0011111111100011000
Q ss_pred ----------------------------------------cCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCC
Q 006387 209 ----------------------------------------ADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGP 248 (647)
Q Consensus 209 ----------------------------------------~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~ 248 (647)
....|..++..|.+.+++ .||+|+.++.+++|+.+ ++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~L~~~~~~-~Gv~i~~~t~v~~Li~~-~g- 248 (564)
T PRK12845 172 PVTGADYRWLNLMARVPRKALPRIAKRLAQGVGGLALGRRYAAGGQALAAGLFAGVLR-AGIPIWTETSLVRLTDD-GG- 248 (564)
T ss_pred cccHHHHHHHHHhhcCcchhHHHHHHHHHHHHhhhccCCcccCChHHHHHHHHHHHHH-CCCEEEecCEeeEEEec-CC-
Confidence 012366788889888887 59999999999999975 56
Q ss_pred CCeEEEEEEEecCCCeEEEEEc-CeEEECCCccccc------C-C------CCCCCCCCcchHHHHHHHcCCeecCcccc
Q 006387 249 DAVCHGVDTLNVETQEVVRFIS-KVTLLASGGAGHI------Y-P------STTNPLVATGDGMAMAHRAQAVISNMEFV 314 (647)
Q Consensus 249 ~~~v~Gv~~~~~~~g~~~~i~A-k~VVlAtGg~~~~------~-~------~~~~~~~~tGdg~~~a~~aGa~l~~~e~~ 314 (647)
+|+||++.+ +|+.+.|.| |.||||||||+++ | + .+.+++.+||||+.|++++||.+.+|++.
T Consensus 249 --~V~GV~~~~--~g~~~~i~a~kaVILAtGGf~~n~em~~~y~p~~~~~~~~~~~~~~tGDGi~ma~~aGA~l~~m~~~ 324 (564)
T PRK12845 249 --RVTGAVVDH--RGREVTVTARRGVVLAAGGFDHDMEMRWKFQSESLGEHASLGAEGNTGDAIRIAQDLGAAIGLMDQA 324 (564)
T ss_pred --EEEEEEEEE--CCcEEEEEcCCEEEEecCCccccHHHHHHhCCCccccccccCCCCCCCHHHHHHHHcCCCccCCccc
Confidence 899998754 455566777 6999999999985 3 2 25677889999999999999999999999
Q ss_pred ccccccccCCCCCCCCCCCCCccceeeecccCCCceEEeCCCCccccccccccccCchhHHHHHHHHHHHh---cCCCeE
Q 006387 315 QFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKK---RNEKYV 391 (647)
Q Consensus 315 q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~l~~rd~~~~~i~~~~~~---~~~~~v 391 (647)
|++|+.....+. .| .+++.+. ...|+++||.+|+||+++.. ++..+.+++...... +...++
T Consensus 325 ~~~p~~~~~~~~--~~------~~~~~~~-~~~g~i~VN~~G~RF~nE~~------~~~~~~~~~~~~~~~~~~~~~~~~ 389 (564)
T PRK12845 325 WWFPAVAPLPGG--AP------AVMLAER-SLPGSLIVDQTGRRFVNEAT------DYMSFGQRVLERERAGDPVESMWI 389 (564)
T ss_pred eEecccccCCCC--Cc------ccchhhh-ccCceEEECCCCCEecCCCC------chhHHHHHHHhhhccCCCCceEEE
Confidence 999976532110 01 1222221 12578999999999998643 233344444332110 001233
Q ss_pred EEecCCC----------C----hhHHH-----hhChhHHHHHHHcCCC--------------------CC----------
Q 006387 392 LLDISHK----------P----TEKIL-----SHFPNIAAECLKYGLD--------------------IT---------- 422 (647)
Q Consensus 392 ~ld~~~~----------~----~~~l~-----~~~~~~~~~~~~~G~d--------------------~~---------- 422 (647)
.+|.... + .+... .+..++.+++++.|+| ++
T Consensus 390 I~D~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~kadTleELA~k~gid~~~L~~TV~~yN~~~~~G~D~dFgr~~~~~~~ 469 (564)
T PRK12845 390 VFDQQYRNSYVFAAELFPRMPIPQAWYDAGIAHRADSLADLARKIGVPVDTFVATMRRFNEMAAAGVDSDFGRGRSAYDR 469 (564)
T ss_pred EECchhhhhcccccccCCCCcccHhHhhcCceEecCCHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCchhhh
Confidence 3443210 0 00000 0223444444433333 21
Q ss_pred -----------------CCC---eeeeeeeceecCceEECCCCC------cccCceeecccccCCCCCCCCccc-hhhhH
Q 006387 423 -----------------SQP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANRLA-SNSLL 475 (647)
Q Consensus 423 -----------------~~~---i~v~p~~~~~~GGi~vD~~~~------T~ipGLyAaGe~a~~g~~Ga~rl~-g~sl~ 475 (647)
+.| +++.|..+.|+||++||+++| ++||||||||+++ +|++|.+|++ |++++
T Consensus 470 ~~gd~~~~~~~~l~pi~~gPfYA~~~~p~~~~T~GGl~id~~~qVLd~dg~pI~GLYAaG~~~-gg~~g~~Y~g~G~~lg 548 (564)
T PRK12845 470 YYGDPTVTPNPNLRPLDKGPFYAVKMVLSDLGTCGGLRADERARVLREDGSVIDGLYAIGNTA-ANAFGATYPGAGATIG 548 (564)
T ss_pred hcCCCcCCCCcccCccccCCEEEEEeccccceecCCeeECCCceEECCCCCCCCCeeEeeeec-cccccCCCCCcchhhH
Confidence 122 566778899999999999998 5899999999998 7999999997 99999
Q ss_pred HHHHHHHHHHHHHHH
Q 006387 476 EALVFARRAVQPSID 490 (647)
Q Consensus 476 ~a~v~G~~Ag~~a~~ 490 (647)
.|++||++||++|++
T Consensus 549 ~a~~fGriAg~~aa~ 563 (564)
T PRK12845 549 QGLVYGYIAAQDAAA 563 (564)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999864
No 46
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=100.00 E-value=4.2e-42 Score=382.32 Aligned_cols=383 Identities=23% Similarity=0.305 Sum_probs=266.4
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeec-------CCCCCHHHHHHHHHHh---c
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVA---G 154 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~-------~~~d~~~~~~~~~~~~---g 154 (647)
+.++||||||+|.||++||+.|++.| +|+||||....+|++..++|+++... +..|+++.++.+.... .
T Consensus 4 d~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~~~s~g~~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~ 83 (557)
T PRK12844 4 DETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTAMSGGVLWLPNNPLMKAAGVPDSHEDALAYLDAVVGDQ 83 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeceecceeecCChHHHHHcCcHHHHHHHHHHHHHHhccc
Confidence 34799999999999999999999999 99999999888888888887765432 2245556544333322 2
Q ss_pred ccCCCHHHHHHHHHHhHHHHHHHHHcCCCcccCCC-CCccccccCCccccceeecc------------------------
Q 006387 155 AYLCDDETVRVVCTEGPDRIRELIAIGASFDRGED-GNLHLAREGGHSHHRIVHAA------------------------ 209 (647)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~-g~~~~~~~gg~~~~r~~~~~------------------------ 209 (647)
....++++++.+++++++.++||+++|++|...+. ..++....++++..|.+++.
T Consensus 84 ~~~~~~~~~~~~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (557)
T PRK12844 84 GPASSPERREAYLRAGPAMVSFLEHQGMRFARCEGWSDYYPDLPGGEARGRSLEAKPFDARKLGPWFDRLNPPMATPPGT 163 (557)
T ss_pred ccCCCHHHHHHHHhhhHHHHHHHHhcCceeEeCCCCCCCCCCCCCCcCCCceecCCCCChhHhhHHHHhhcCcccccccc
Confidence 22378899999999999999999999999975321 11222223344333332221
Q ss_pred ----------------------------------------CCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCC
Q 006387 210 ----------------------------------------DMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPD 249 (647)
Q Consensus 210 ----------------------------------------~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~ 249 (647)
...|..++..|.+.+++ .|++++.+++|++|+.+ ++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~G~~l~~~l~~~~~~-~gv~i~~~~~v~~Li~~-~g-- 239 (557)
T PRK12844 164 VVMTDEYKWLQLIKRTPRGMRTAARVGARTLAARIRGQKLLTNGAALIGRMLEAALA-AGVPLWTNTPLTELIVE-DG-- 239 (557)
T ss_pred cccHHHHHHHHhhccCchhHHHHHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHHh-CCCEEEeCCEEEEEEEe-CC--
Confidence 11367788888888887 49999999999999986 56
Q ss_pred CeEEEEEEEecCCCeEEEEEc-CeEEECCCccccc------C-CC------CCCCCCCcchHHHHHHHcCCeecCccccc
Q 006387 250 AVCHGVDTLNVETQEVVRFIS-KVTLLASGGAGHI------Y-PS------TTNPLVATGDGMAMAHRAQAVISNMEFVQ 315 (647)
Q Consensus 250 ~~v~Gv~~~~~~~g~~~~i~A-k~VVlAtGg~~~~------~-~~------~~~~~~~tGdg~~~a~~aGa~l~~~e~~q 315 (647)
+|+||++.. +|+.+.|+| +.|||||||++.. | +. +.+++.++|||+.|++++||.+.+|+++|
T Consensus 240 -~v~Gv~~~~--~g~~~~i~A~~aVIlAtGG~~~N~em~~~~~p~~~~~~~~~~~~~~tGDGi~ma~~~GA~l~~m~~~~ 316 (557)
T PRK12844 240 -RVVGVVVVR--DGREVLIRARRGVLLASGGFGHNAEMRKRYQPQPNSGDWTNANPGDTGEVIEAAMRLGAALDLMDEAW 316 (557)
T ss_pred -EEEEEEEEE--CCeEEEEEecceEEEecCCccCCHHHHHHhcCCcccCcccCCCCCCCHHHHHHHHHcCCCcccccccc
Confidence 899998863 577778999 5899999999983 3 21 34567899999999999999999999999
Q ss_pred cccccccCCCCCCCCCCCCCccceeeecccCCCceEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCCeEEEec
Q 006387 316 FHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDI 395 (647)
Q Consensus 316 ~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~l~~rd~~~~~i~~~~~~~~~~~v~ld~ 395 (647)
++|+.+...+.+. ..+........++++||.+|+||+++.. ++..+..++..+. +...++.+|.
T Consensus 317 ~~p~~~~~~~~~~--------~~~~~~~~~~~g~i~VN~~G~RF~nE~~------~~~~~~~~~~~~~--~~~~~~I~D~ 380 (557)
T PRK12844 317 WVPGAPLPNGGPR--------PYMHNSERSKPGSIIVDRAGRRFVNEAG------SYMEVGRAMYAQD--AVPAWMIMDS 380 (557)
T ss_pred ccCccccCCCCcc--------cccccccccCCcEEEECCCCCccccCCC------cHHHHHHHHHhCC--CceEEEEECc
Confidence 9997664322110 1111112234678999999999998653 2333333332211 0111233332
Q ss_pred CCC--------C----hhHHH-----hhChhHHHHHHHcC--------------------CCCC----------------
Q 006387 396 SHK--------P----TEKIL-----SHFPNIAAECLKYG--------------------LDIT---------------- 422 (647)
Q Consensus 396 ~~~--------~----~~~l~-----~~~~~~~~~~~~~G--------------------~d~~---------------- 422 (647)
... + .+... .+..++.+++++.| .|++
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~g~~~kadTleELA~k~gid~~~L~atv~~yN~~~~~G~D~dFgr~~~~~~~~~~~~~ 460 (557)
T PRK12844 381 RYRKRYLFGTIPPGPTPQEWLDSGYMKRADTIEELAGKTGIDPAGLAATVERFNGFAATGTDPDFHRGESAYDRYYGDPT 460 (557)
T ss_pred hHHhhcCccccCCccChHHHhhcCceEecCCHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCccCCCcchhhccccCCc
Confidence 110 0 00000 01223333333332 2321
Q ss_pred -----------CCC---eeeeeeeceecCceEECCCCC------cccCceeecccccCCCCCCCCccc-hhhhHHHHHHH
Q 006387 423 -----------SQP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANRLA-SNSLLEALVFA 481 (647)
Q Consensus 423 -----------~~~---i~v~p~~~~~~GGi~vD~~~~------T~ipGLyAaGe~a~~g~~Ga~rl~-g~sl~~a~v~G 481 (647)
+.| +++.|..+.|+||+.||+++| .+||||||||+++ +|++|.+|++ |+++++|++||
T Consensus 461 ~~~~~~l~pi~~~PfYA~~~~~~~~~T~GGl~in~~~qVld~~g~pIpGLYAAG~~~-gg~~g~~Y~~~G~~l~~a~~~G 539 (557)
T PRK12844 461 NKPNPSLGPLDKPPFYAVRMVPGDVGTSGGLLTDEHARVLREDGSVIPGLYATGNCT-ASVMGRTYPGAGASIGNSFVFG 539 (557)
T ss_pred CCCCcccCcCCCCCeEEEEEeccccEECCCccCCCCceEECCCCCCccceeeccccc-cccccCCCCcCccchHHHHHHH
Confidence 122 466777889999999999998 5899999999998 7999999997 89999999999
Q ss_pred HHHHHHHHHhh
Q 006387 482 RRAVQPSIDHK 492 (647)
Q Consensus 482 ~~Ag~~a~~~~ 492 (647)
|+||++|+++.
T Consensus 540 riAg~~aa~~~ 550 (557)
T PRK12844 540 YIAALHAAGAR 550 (557)
T ss_pred HHHHHHHHhcc
Confidence 99999998865
No 47
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=100.00 E-value=1.1e-40 Score=371.68 Aligned_cols=384 Identities=21% Similarity=0.285 Sum_probs=260.1
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC-CeEEEEecC--CCCCCccccCCCeeeecCC-------CCCHHHHHHHHHHhccc
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE--PHESNTNYAQGGVSAVLCP-------SDSVESHMQDTIVAGAY 156 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~--~~~G~t~~a~Ggi~~~~~~-------~d~~~~~~~~~~~~g~~ 156 (647)
.++||||||+|.|||+||+.|++.| +|+||||.. ..+|++.+++|++....+. .|+++.++.++++.+.+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~~s~Gg~~~~~~~~q~~~gi~ds~e~~~~d~~~~~~~ 82 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAFWSLGGLFLVDSPEQRRLGIKDSLELALQDWLGSAGF 82 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCceeccCCceeccCCHHHHhcCcccCHHHHHHHHHhccCC
Confidence 5799999999999999999999999 999999999 6788888888888765432 68999999999998877
Q ss_pred CCCHH-----HHHHHHHH-hHHHHHHHHHcCCCcccCC----CCCccccccC--CccccceeeccCCchHHHHHHHHHHH
Q 006387 157 LCDDE-----TVRVVCTE-GPDRIRELIAIGASFDRGE----DGNLHLAREG--GHSHHRIVHAADMTGREIERALLEAV 224 (647)
Q Consensus 157 ~~~~~-----~~~~~~~~-~~~~i~~l~~~Gv~~~~~~----~g~~~~~~~g--g~~~~r~~~~~~~~g~~~~~~L~~~~ 224 (647)
..+++ ++..+++. +++.++||+++|++|.... ++.. ..+ +++.+| .|..+.+|..++..|.+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~---~~~~~~~~~~r-~~~~~~~G~~~~~~l~~~~ 158 (549)
T PRK12834 83 DRPEDHWPRQWAEAYVDFAAGEKRSWLHSLGLRFFPVVGWAERGGG---DAGGHGNSVPR-FHITWGTGPGVVEPFERRV 158 (549)
T ss_pred CCccccchHHHHHHHHHhCCHHHHHHHHHcCCeeEecCCccccCCc---ccCCcccccCc-eecCCCCcHHHHHHHHHHH
Confidence 76665 36677775 7999999999999996532 1211 222 235666 4555557788888887776
Q ss_pred H---cCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCC-------------CeEEEEEcCeEEECCCccccc-----
Q 006387 225 V---SDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVET-------------QEVVRFISKVTLLASGGAGHI----- 283 (647)
Q Consensus 225 ~---~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~-------------g~~~~i~Ak~VVlAtGg~~~~----- 283 (647)
+ +..+|++++++++++|+.+ ++ +|+||++.+..+ ++.+.|+||.||||||||+.+
T Consensus 159 ~~~~~~~gv~i~~~t~~~~Li~~-~g---~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~~n~em~~ 234 (549)
T PRK12834 159 REAAARGLVRFRFRHRVDELVVT-DG---AVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGIGGNHELVR 234 (549)
T ss_pred HHHHHhCCceEEecCEeeEEEEe-CC---EEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCcccCHHHHH
Confidence 5 3346999999999999986 56 899998743211 235689999999999999986
Q ss_pred --CC----------CCCCCCCCcchHHHHHHHcCCeecCccccccccccccCCCCCCCCCCCCCccceeeecccCCCceE
Q 006387 284 --YP----------STTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGIL 351 (647)
Q Consensus 284 --~~----------~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~ 351 (647)
++ .++++..+||||+.||+++||.+.+|+.++.+|..+...+ +..+.. ... .....+.++
T Consensus 235 ~~~p~~~~~~~~~~~~~~~~~~tGdGi~ma~~aGA~l~~~~~~~~~~~~~~~~~-~~~~~~----~~~---~~~~~~~i~ 306 (549)
T PRK12834 235 RNWPERLGTPPKDMVSGVPAHVDGRMLGIAEAAGARVINRDRMWHYTEGIRNWD-PIWPNH----GIR---ILPGPSSLW 306 (549)
T ss_pred HhCccccCCCccccccCCCCCCCcHHHHHHHHcCCcEeCcccccccccccCCCC-CcCccc----cce---eccCCCEEE
Confidence 23 1355556899999999999999999998776654332211 000000 010 112345799
Q ss_pred EeCCCCccccccccc-cccC--------c----hhHHHHHHHHH-----------------------------------H
Q 006387 352 YNLGMERFMPLYDER-AELA--------P----RDVVARSIDDQ-----------------------------------L 383 (647)
Q Consensus 352 vn~~G~rf~~~~~~~-~~l~--------~----rd~~~~~i~~~-----------------------------------~ 383 (647)
||.+|+||+++.... .... + .-++...+.+. .
T Consensus 307 Vn~~GkRF~nE~~~~~~~~~~~~~~~~~~~~~~~~I~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (549)
T PRK12834 307 FDATGNRLPAPLFPGFDTLGTLKHILKTGYDYSWFILTQKIIEKEFALSGSEQNPDLTGKDWKLLLRRRGKGAPGPVEAF 386 (549)
T ss_pred ECCCCCCCCCCccccccHHHHHHHHhccCCccEEEEeCHHHHHHhhccCccccCcccccchhhhhhhhhcCCCCccHHHH
Confidence 999999999974210 0000 0 00000000000 0
Q ss_pred HhcCCCeEEEecCCCChhHHHhhCh-----------hHHHHHHH--------cCCCC-----------------------
Q 006387 384 KKRNEKYVLLDISHKPTEKILSHFP-----------NIAAECLK--------YGLDI----------------------- 421 (647)
Q Consensus 384 ~~~~~~~v~ld~~~~~~~~l~~~~~-----------~~~~~~~~--------~G~d~----------------------- 421 (647)
.+.+ ..++ .. -+.++|.+.+. ++.+..+. +|.|+
T Consensus 387 ~~~g-~~~~-kA--dTleELA~k~g~~~~~~~id~~~L~~tv~~yN~~~~~~fg~d~~~~~~~~~~~~~~~~~~~~~~~~ 462 (549)
T PRK12834 387 KDHG-EDFV-VA--DDLEELVAGMNALTGEPLLDYAHLRRQIEARDREVANPFSKDAQITAIRNARRYLGDRLIRVAKPH 462 (549)
T ss_pred HhcC-CcEE-Ee--CCHHHHHHHhcccccccCCCHHHHHHHHHHHhhhhcCccccchhhhhhhhhhhhcccchhcccCCc
Confidence 0000 0010 00 01122221110 01100000 01221
Q ss_pred -----CCCC---eeeeeeeceecCceEECCCCC------cccCceeecccccC---CCCCCCCccchhhhHHHHHHHHHH
Q 006387 422 -----TSQP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVAC---TGLHGANRLASNSLLEALVFARRA 484 (647)
Q Consensus 422 -----~~~~---i~v~p~~~~~~GGi~vD~~~~------T~ipGLyAaGe~a~---~g~~Ga~rl~g~sl~~a~v~G~~A 484 (647)
.+.| +++.|..+.|+||++||+++| ++||||||||++++ +|++|.++++|+++++|++|||+|
T Consensus 463 ~~~~~~~gPfYA~~~~~~~~~T~GGl~id~~~qVld~dg~pIpGLYAaG~~~g~~~~g~~g~~~~~G~~lg~a~~~GriA 542 (549)
T PRK12834 463 RLLDPAAGPLIAVRLHILTRKTLGGLETDLDSRVLGADGTPLPGLYAAGEAAGFGGGGVHGYNALEGTFLGGCIFSGRAA 542 (549)
T ss_pred cccCCCCCCEEEEEEeccccEEccCEeECCCCceeCCCCCEeCCeeeceecccccCCCcCCccccccchHHHHHHHHHHH
Confidence 2344 577788899999999999998 58999999999983 378888899999999999999999
Q ss_pred HHHHHH
Q 006387 485 VQPSID 490 (647)
Q Consensus 485 g~~a~~ 490 (647)
|++|++
T Consensus 543 g~~aa~ 548 (549)
T PRK12834 543 GRAAAR 548 (549)
T ss_pred HHHHhh
Confidence 999864
No 48
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=100.00 E-value=7e-41 Score=373.69 Aligned_cols=386 Identities=18% Similarity=0.220 Sum_probs=263.8
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecC-------CCCCHHHHHHHHHHhcccC
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC-------PSDSVESHMQDTIVAGAYL 157 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~-------~~d~~~~~~~~~~~~g~~~ 157 (647)
+.++||||||+|+||++||+.|++.| +|+||||....+|+|.+++|++..... ..|+++.+++++.+.+.+.
T Consensus 9 ~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t~~s~G~i~~~~~~~q~~~G~~d~~~~~~~~~~~~~~~~ 88 (584)
T PRK12835 9 DREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGSTALSGGGIWVPGAPAQRREGYVPDPEDVRRYLKQITGGL 88 (584)
T ss_pred cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchHHHhCCCccccCChhhhhcCCCCCHHHHHHHHHHHhccc
Confidence 45799999999999999999999999 999999999989999999998865432 3688999999988888889
Q ss_pred CCHHHHHHHHHHhHHHHHHHHHcC--CCcccCCC-CCccccccCCccccceeec--------------------------
Q 006387 158 CDDETVRVVCTEGPDRIRELIAIG--ASFDRGED-GNLHLAREGGHSHHRIVHA-------------------------- 208 (647)
Q Consensus 158 ~~~~~~~~~~~~~~~~i~~l~~~G--v~~~~~~~-g~~~~~~~gg~~~~r~~~~-------------------------- 208 (647)
+++++++.+++++++.++||++++ +.|..... ..+.....+.....|.+.+
T Consensus 89 ~d~~~v~~~~~~s~~~i~wl~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~ 168 (584)
T PRK12835 89 VSAARLRAYVDAAPQMMEFLENLSPWLEFVWKPGYADYYPELPGGSPLGSTINVPPIDLRKLGEDEQHLLPPLALAPKGI 168 (584)
T ss_pred CCHHHHHHHHHHhHHHHHHHHHhCCcceeeecCCCCccCCCCCCCCCCCCccCCCCCChhhhchhHHhcccccccccccc
Confidence 999999999999999999999876 44421110 0000000000000000000
Q ss_pred ---------------------------------------cCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCC
Q 006387 209 ---------------------------------------ADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPD 249 (647)
Q Consensus 209 ---------------------------------------~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~ 249 (647)
....|..++..|.+.+++ .|++|+.++.+++|+.+++|
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~-~gv~i~~~~~~~~Li~d~~g-- 245 (584)
T PRK12835 169 WFTPKDLRLFYMVRQTWAGKAVLLKLIWRMVRARVFGRRMAAIGQSLVARLRLALKD-AGVPLWLDSPMTELITDPDG-- 245 (584)
T ss_pred cccHHHHHHHHhhccCcchHHHHHHHHHHHHHhhhccCccccccHHHHHHHHHHHHh-CCceEEeCCEEEEEEECCCC--
Confidence 011355566677777766 59999999999999997666
Q ss_pred CeEEEEEEEecCCCeEEEEEcC-eEEECCCccccc-------CC------CCCCCCCCcchHHHHHHHcCCeecCccccc
Q 006387 250 AVCHGVDTLNVETQEVVRFISK-VTLLASGGAGHI-------YP------STTNPLVATGDGMAMAHRAQAVISNMEFVQ 315 (647)
Q Consensus 250 ~~v~Gv~~~~~~~g~~~~i~Ak-~VVlAtGg~~~~-------~~------~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q 315 (647)
+|+||++.. +++.+.|+|+ .||||||||++. .| .+.+++.++|||+.|++++||.+.+|+..+
T Consensus 246 -~V~Gv~~~~--~~~~~~i~a~~aVilAtGGf~~N~em~~~y~p~~~~~~~~~g~~~~tGDGi~ma~~~GA~~~~~~~~~ 322 (584)
T PRK12835 246 -AVVGAVVER--EGRTLRIGARRGVILATGGFDHDMDWRKEYLPELERKDWSFGNPANTGDGIRAGEKVGAATDLLDEAW 322 (584)
T ss_pred -cEEEEEEEe--CCcEEEEEeceeEEEecCcccCCHHHHHHhCCCCCcCcccCCCCCCCcHHHHHHHHcCCCcccCccce
Confidence 899998853 5667789996 799999999962 12 234567899999999999999999998777
Q ss_pred cccccccCCCCCCCCCCCCCccceeeecccCCCceEEeCCCCccccccccccccCchhHHHHHHHHHHHh--cC-CCeEE
Q 006387 316 FHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKK--RN-EKYVL 392 (647)
Q Consensus 316 ~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~l~~rd~~~~~i~~~~~~--~~-~~~v~ 392 (647)
++|......+.. .+.+.+... .++++||.+|+||+++..+ +..+..++...... .. ..++.
T Consensus 323 ~~~~~~~~~~~~---------~~~~~~~~~-~~~i~VN~~G~RF~nE~~~------~~~~~~~~~~~~~~~~~~~~~~~I 386 (584)
T PRK12835 323 WFPAICWPDGRM---------QFMLNERMM-PAQFIVNGAGKRFINEAAP------YMDFVHAMIAGQRSGVGHIPCWLV 386 (584)
T ss_pred ecceeecCCCce---------eeeeeccCC-CceEEECCCCCcCcCCcCc------hhhHHHHHHhhccCCCCCcceEEE
Confidence 666543321100 111222112 3579999999999987532 22222322221100 00 01233
Q ss_pred EecCCC-------------------------ChhHHH----hhChhHHHHHHHcC--------------------CCCC-
Q 006387 393 LDISHK-------------------------PTEKIL----SHFPNIAAECLKYG--------------------LDIT- 422 (647)
Q Consensus 393 ld~~~~-------------------------~~~~l~----~~~~~~~~~~~~~G--------------------~d~~- 422 (647)
+|.... ..+.+. .+.+++.+++++.| .|.+
T Consensus 387 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~kAdTleeLA~~~gida~~L~aTV~~yN~~~~~G~D~dF 466 (584)
T PRK12835 387 TDIRSFSRYVFGGHLPIPKIPFAPVPTGRKFPQAWLESGVVKKADTWDELAAKIGVPAENLRATAERFNGLARKGHDDDF 466 (584)
T ss_pred EChHHHhhcCcccccCCCccccccccccccCcHHHHhCCCeeecCCHHHHHHHcCCCHHHHHHHHHHHHHHhhcCcCccc
Confidence 332100 000000 01123333333332 2211
Q ss_pred -------------------------CCC---eeeeeeeceecCceEECCCCC------cccCceeecccccCCCCCCCCc
Q 006387 423 -------------------------SQP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANR 468 (647)
Q Consensus 423 -------------------------~~~---i~v~p~~~~~~GGi~vD~~~~------T~ipGLyAaGe~a~~g~~Ga~r 468 (647)
+.| +++.|..+.|+||++||+++| ++||||||||+++ +|++|.+|
T Consensus 467 gr~~~~~~~~~~~~~~~~~~l~pi~~gPfYA~~~~p~~~~T~GGl~in~~~qVLd~~g~pIpGLYAAGe~~-Gg~~g~~Y 545 (584)
T PRK12835 467 NRGDSAYDNYYGDPTLPNPNLDPLGKPPYYAFRIELGDLGTSGGLRTDEHARVLREDDSVIPGLYAVGNTS-ASVMGRSY 545 (584)
T ss_pred CCCCcchhcccCCCCCCCccccccccCCeEEEEecccccccCcCccCCCCceEECCCCCCccceeeeeecc-cccccCCC
Confidence 122 456677889999999999998 6899999999998 79999999
Q ss_pred cc-hhhhHHHHHHHHHHHHHHHHhhhc
Q 006387 469 LA-SNSLLEALVFARRAVQPSIDHKKS 494 (647)
Q Consensus 469 l~-g~sl~~a~v~G~~Ag~~a~~~~~~ 494 (647)
++ |+++++|++|||+||++|++.++.
T Consensus 546 ~g~G~slg~a~~fGriAG~~aa~~~~~ 572 (584)
T PRK12835 546 AGAGATIGPAMTFGYVAARHAAAVVAA 572 (584)
T ss_pred CcCccchHHHHHHHHHHHHHHHHhhhh
Confidence 87 788999999999999999987643
No 49
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=100.00 E-value=6e-39 Score=348.93 Aligned_cols=372 Identities=20% Similarity=0.208 Sum_probs=255.8
Q ss_pred EECcchHHHHHHHHHHhcC-CeEEEEecCC--CCCCccccCCCeeee-------cCCCCCHHHHHHHHHHhcccCCCHHH
Q 006387 93 VIGSGVAGLCYALEVAKHG-TVAVITKAEP--HESNTNYAQGGVSAV-------LCPSDSVESHMQDTIVAGAYLCDDET 162 (647)
Q Consensus 93 VIGgG~AGl~AA~~aa~~G-~V~llEk~~~--~~G~t~~a~Ggi~~~-------~~~~d~~~~~~~~~~~~g~~~~~~~~ 162 (647)
|||+|+||++||+.|++.| +|+||||.+. .+|++... +++... ....++++.+++++++.+.+.+|+++
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~~~Gg~s~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l 79 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPRARRGGNARHG-RNIRVAHDIPTDFQRDSYPAEEFERDLAPVTGGRTNESL 79 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCCCcCCcCcccc-cchhhcccchhhhhhhhccHHHHHHHHHHhhCCCCCHHH
Confidence 7999999999999999999 9999999875 34544332 222111 11236678899999998889999999
Q ss_pred HHHHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEE
Q 006387 163 VRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLL 242 (647)
Q Consensus 163 ~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~ 242 (647)
++.+++++++.++||+++|++|....++.+.. ..+.++. ...+..++..|.+.+++ .|++|+++++|++|+
T Consensus 80 ~~~~~~~s~~~i~wl~~~Gv~f~~~~~g~~~~-------~~~~~~~-~~~g~~l~~~L~~~a~~-~Gv~i~~~~~v~~l~ 150 (432)
T TIGR02485 80 SRLGIGRGSRDLRWAFAHGVHLQPPAAGNLPY-------SRRTAFL-RGGGKALTNALYSSAER-LGVEIRYGIAVDRIP 150 (432)
T ss_pred HHHHHhcchhHHHHHHhCCceeeecCCCCccc-------cCceeee-cCCHHHHHHHHHHHHHH-cCCEEEeCCEEEEEE
Confidence 99999999999999999999997543332211 0112222 23577899999999987 499999999999999
Q ss_pred ecC-CCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccccc-------CCC------CCCCCCCcchHHHHHHHcCCee
Q 006387 243 TTL-DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI-------YPS------TTNPLVATGDGMAMAHRAQAVI 308 (647)
Q Consensus 243 ~~~-~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~-------~~~------~~~~~~~tGdg~~~a~~aGa~l 308 (647)
.++ ++ +|+||... ..+ ..|+||.|||||||++.. ++. ..+.+.++|||+.|+.++||.+
T Consensus 151 ~~~~~g---~v~gv~~~--~~~--~~i~ak~VIlAtGG~~~n~~~~~~~~~~~~~~~~~~~~~~~tGdgi~ma~~~Ga~~ 223 (432)
T TIGR02485 151 PEAFDG---AHDGPLTT--VGT--HRITTQALVLAAGGLGANRDWLRKTHGPRADGIANRGTPYQLGGLLLQLLAEGAQA 223 (432)
T ss_pred ecCCCC---eEEEEEEc--CCc--EEEEcCEEEEcCCCcccCHHHHHhhcCCccccccccCCCCcccHHHHHHHHcCccc
Confidence 863 34 78888753 122 468999999999999863 111 2244678999999999999998
Q ss_pred cCccccccccccccCCCCCCCCCCCCCccceeeecccCCCceEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCC
Q 006387 309 SNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNE 388 (647)
Q Consensus 309 ~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~l~~rd~~~~~i~~~~~~~~~ 388 (647)
.++. .++|+..... .. |.. ............++++||.+|+||+++..+... ..+......+... .+..
T Consensus 224 ~~~~-~~~~~~~~~~-~~---~~~---~~~~~~~~~~~~~~i~vn~~G~RF~~E~~~~~~-~~~~~~~~~~~~~--~~~~ 292 (432)
T TIGR02485 224 IGDP-TDGHVVAVDA-RA---PFH---DGGIVTRIDGMQLGIVVGRDGRRFADEGAIRGP-ERYAVWGRQLASR--PGQR 292 (432)
T ss_pred cCCC-CcceeEeecC-CC---CcC---CCceeeeecccccEEEECCCCCEeeecCCcccc-chHHHHHHHHHhC--CCCe
Confidence 7665 3455543321 10 100 011122222335679999999999986432100 0111222222211 1111
Q ss_pred CeEEEecCCCCh---hH-HHhhChhHHHHHHHcCCCCC---------------------CCC---eeeeeeeceecCceE
Q 006387 389 KYVLLDISHKPT---EK-ILSHFPNIAAECLKYGLDIT---------------------SQP---IPVVPAAHYMCGGVR 440 (647)
Q Consensus 389 ~~v~ld~~~~~~---~~-l~~~~~~~~~~~~~~G~d~~---------------------~~~---i~v~p~~~~~~GGi~ 440 (647)
.++++|....+. .. ...+..++.+++++.|+|+. +.| +++.|..|+|+||++
T Consensus 293 ~~~i~D~~~~~~~~~~~~~~~~adtleeLA~~~gid~~~l~~tv~~yN~~~~~g~~~i~~~PfYa~~~~p~~~~T~GGl~ 372 (432)
T TIGR02485 293 AYILLDADAAKRLPPMACPPLSADTLEELAGLLGIDPGGLAETLDRPNAAPRTGARMILVVPFHAYPMIPGITFTRYGLV 372 (432)
T ss_pred EEEEecchhhhhcccccCCceecCCHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeecccceeccceE
Confidence 345566532210 00 00123455556666666532 344 788999999999999
Q ss_pred ECCCCC------cccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhh
Q 006387 441 AGLQGE------TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHK 492 (647)
Q Consensus 441 vD~~~~------T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~ 492 (647)
||+++| .+|||||||||++++++||.+|++|+++++|++|||+||++|++++
T Consensus 373 id~~~~Vl~~~g~~I~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~aa~~~ 430 (432)
T TIGR02485 373 VDATARVRLNDAVAPDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRAAARLA 430 (432)
T ss_pred ECCCceEECCCCCCCCCeeecccccccccccCCCccchhhHHHHHHHHHHHHHHHHhh
Confidence 999998 4899999999997568999999999999999999999999998764
No 50
>PRK12839 hypothetical protein; Provisional
Probab=100.00 E-value=5.5e-39 Score=357.24 Aligned_cols=387 Identities=21% Similarity=0.216 Sum_probs=257.1
Q ss_pred CccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeec-------CCCCCHHHHHHHHHHhccc
Q 006387 85 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVAGAY 156 (647)
Q Consensus 85 ~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~-------~~~d~~~~~~~~~~~~g~~ 156 (647)
.+.++||||||+|++|++||+.|++.| +|+||||....+|++.++.|+++... +..++.+..+.++......
T Consensus 5 ~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 84 (572)
T PRK12839 5 MTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAWSGGWMWTPGNSLARADGVVEDKEEPRTYLEHRLGE 84 (572)
T ss_pred cCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccccccCCeeecCCchhhhhccCcCchhhHHHHHHHHhCC
Confidence 456899999999999999999999999 99999999888888888877766432 2256777777777777778
Q ss_pred CCCHHHHHHHHHHhHHHHHHHHH-cCCCcccCCC-CCccccccCCccccceee---------------------------
Q 006387 157 LCDDETVRVVCTEGPDRIRELIA-IGASFDRGED-GNLHLAREGGHSHHRIVH--------------------------- 207 (647)
Q Consensus 157 ~~~~~~~~~~~~~~~~~i~~l~~-~Gv~~~~~~~-g~~~~~~~gg~~~~r~~~--------------------------- 207 (647)
.+++++++.+++.+++.++||++ .+++|..... ..++....++....|.++
T Consensus 85 ~~~~~~~~~~~~~s~e~i~wL~~~~~v~f~~~~~~~d~~~~~~~~~~~gr~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~ 164 (572)
T PRK12839 85 NYDADKVDALLDGAPEMVDFFEKKTALQFVPGAKIADIYGDLPGAGTGHRSVGPKPVNLRKLGPDVAALLRHQLYETSFL 164 (572)
T ss_pred CCCHHHHHHHHHhCHHHHHHHHhCCceEEEECCCCCCCCCCCCCCCCCCceecCCCCChhhcChHHHHhcCCCccccccc
Confidence 89999999999999999999998 6676631100 000000000000000000
Q ss_pred ----------------------------------------cc---CCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEec
Q 006387 208 ----------------------------------------AA---DMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT 244 (647)
Q Consensus 208 ----------------------------------------~~---~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~ 244 (647)
.. ...|..++..|.+.+.+ .|++|+.++.+++|+.+
T Consensus 165 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~~-~Gv~i~~~t~v~~Li~~ 243 (572)
T PRK12839 165 GMGIMAGPDLQAFLHATQDPKGFVHAARRVIVHMWDLATHRRGMQLVNGTALTGRLLRSADD-LGVDLRVSTSATSLTTD 243 (572)
T ss_pred ccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHH-CCCEEEcCCEEEEEEEC
Confidence 00 01366788889988887 49999999999999986
Q ss_pred CCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccc-------cCCCC--------CCCCCCcchHHHHHHHcCCeec
Q 006387 245 LDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH-------IYPST--------TNPLVATGDGMAMAHRAQAVIS 309 (647)
Q Consensus 245 ~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~-------~~~~~--------~~~~~~tGdg~~~a~~aGa~l~ 309 (647)
+++ +|+||.+.+ .+++...+.+|.||||||||++ +++.+ .+++.+||||+.|++++||.+.
T Consensus 244 ~~g---~V~GV~~~~-~~g~~~i~aak~VVLAtGGf~~n~~~~~~~~p~~~~~~~~~~~~~~~~tGdGi~ma~~~GA~l~ 319 (572)
T PRK12839 244 KNG---RVTGVRVQG-PDGAVTVEATRGVVLATGGFPNDVDRRKELFPRTPTGREHWTLAPAETTGDGISLAESVGARLD 319 (572)
T ss_pred CCC---cEEEEEEEe-CCCcEEEEeCCEEEEcCCCcccCHHHHHHhCCCCCCCCccccCCCCCCCcHHHHHHHHhCCccc
Confidence 556 899998865 3565544556999999999998 45532 3567899999999999999998
Q ss_pred Ccc--ccccccccccCCCCCCCCCCCCCccceeeeccc-CCCceEEeCCCCccccccccccccCchhHHHHHHHHHHHhc
Q 006387 310 NME--FVQFHPTALADEGLPIKPKKTRENSFLITEAVR-GDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKR 386 (647)
Q Consensus 310 ~~e--~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~-~~g~~~vn~~G~rf~~~~~~~~~l~~rd~~~~~i~~~~~~~ 386 (647)
++. ..+++|..+..... +.. ..+.....+ ..+.++||.+|+||+++... +..++.++......+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~g~i~VN~~GkRF~nE~~~------~~~~~~~~~~~~~~~ 386 (572)
T PRK12839 320 RDLASPAAWCPVSLVPYRN---GKV----GTFPHIMDRGKPGSIGVLATGKRFVNEANG------YYDYTLAMVKAAPEG 386 (572)
T ss_pred cCCcccccccceecccCCC---Ccc----ccccccccccCCceEEECCCCCcCCCCCCc------cccHHHHHHHhccCC
Confidence 743 33455543321100 000 000000111 25689999999999987432 222333333221111
Q ss_pred C--CCeEEEecCCC-------------ChhHHH-----hhChhHHHHHHHc--------------------CCCCC----
Q 006387 387 N--EKYVLLDISHK-------------PTEKIL-----SHFPNIAAECLKY--------------------GLDIT---- 422 (647)
Q Consensus 387 ~--~~~v~ld~~~~-------------~~~~l~-----~~~~~~~~~~~~~--------------------G~d~~---- 422 (647)
. ..++.+|.... ..+... .+..++.+++++. |.|++
T Consensus 387 ~~~~~~~I~D~~~~~~~~~~~~~~~~~~~~~~~~~g~~~kadTleELA~k~gid~~~L~~TV~~yN~~~~~G~D~dFgr~ 466 (572)
T PRK12839 387 EPVCSWLIADSRFVRKYPLGMAKPLPVPLTPYLRSGYLTRGRTIEELAEKCGIDPAGLEATVAEFNENARDGEDPEFGRG 466 (572)
T ss_pred CCccEEEEeChHHHhhccccccCCCCCccHhHhhcCcEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHhhcCCCcCcCCC
Confidence 0 11233342100 000000 0122333333333 32221
Q ss_pred -----------------------CCC---eeeeeeeceecCceEECCCCC------cccCceeecccccCCCCCCCCc-c
Q 006387 423 -----------------------SQP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANR-L 469 (647)
Q Consensus 423 -----------------------~~~---i~v~p~~~~~~GGi~vD~~~~------T~ipGLyAaGe~a~~g~~Ga~r-l 469 (647)
+.| +++.|..+.|+||+.||+++| ++||||||||+++ +|++|.+| +
T Consensus 467 ~~~~~~~~gd~~~~~~~~l~pi~~gPfYA~~~~p~~~~T~GGl~in~~~qVLd~dg~pIpGLYAAG~~~-gg~~g~~Y~~ 545 (572)
T PRK12839 467 TTPFNRGSGDPDNGPNPSLAPLEKGPFYAVKVVPGSFGTFAGLVADGKSRVLRDDDTPIDGLYAAGNDQ-ASVMGGHYPS 545 (572)
T ss_pred cchhhcccCCcccCCCcccccCCCCCeEEEEEeccccccCCCccCCCCceEECCCCCCcCCceeccccc-cccccCCCCC
Confidence 123 567788899999999999998 5899999999998 78888766 6
Q ss_pred chhhhHHHHHHHHHHHHHHHH
Q 006387 470 ASNSLLEALVFARRAVQPSID 490 (647)
Q Consensus 470 ~g~sl~~a~v~G~~Ag~~a~~ 490 (647)
+|++++.|++||++||++|++
T Consensus 546 ~G~~lg~a~~fGriAg~~aA~ 566 (572)
T PRK12839 546 GGINLGPAMTFGYIAGRELAG 566 (572)
T ss_pred cccchhHHHHHHHHHHHHHHh
Confidence 799999999999999999875
No 51
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=100.00 E-value=1e-37 Score=349.10 Aligned_cols=389 Identities=21% Similarity=0.202 Sum_probs=260.2
Q ss_pred CccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeec-------CCCCCHHHHHHHHHHhccc
Q 006387 85 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVAGAY 156 (647)
Q Consensus 85 ~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~-------~~~d~~~~~~~~~~~~g~~ 156 (647)
++.++||||||+|++|++||+.|++.| +|+||||....+|++..+.|++.... +..|+++.++.++......
T Consensus 13 ~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~~s~g~~~~~~~~~q~~~g~~ds~e~~~~~~~~~~~~ 92 (578)
T PRK12843 13 WDAEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTATSAGTTWIPGTRHGLAVGPDDSLEAARTYLDALVGD 92 (578)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccCceeecCCchHhhhccccccHHHHHHHHHHhhCC
Confidence 355799999999999999999999999 99999999988898888888776432 2367888887777766666
Q ss_pred CCCHHHHHHHHHHhHHHHHHHHH-cCCCcccC---CC-----------CCcc-----------------------ccccC
Q 006387 157 LCDDETVRVVCTEGPDRIRELIA-IGASFDRG---ED-----------GNLH-----------------------LAREG 198 (647)
Q Consensus 157 ~~~~~~~~~~~~~~~~~i~~l~~-~Gv~~~~~---~~-----------g~~~-----------------------~~~~g 198 (647)
..|+++++.+++++++.++||++ .|+.|... ++ +... ....+
T Consensus 93 ~~d~~lv~~~~~~s~e~i~wl~~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (578)
T PRK12843 93 RSPEELRDAFLASGPRAIAFLEANSEVKFRAYASHPDYESDLPGATLRGRALEPLPFDGRKLGADFALIRPPIPEFTVLG 172 (578)
T ss_pred CCcHHHHHHHHhccHHHHHHHHHcCCceeeeCCCCCCCCCCCCCCCCCCCcccCCCCChhhhhhHHHHhccccccccccc
Confidence 68999999999999999999996 78888421 11 0000 00112
Q ss_pred Cccccce------------------------------eec-cC--CchHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC
Q 006387 199 GHSHHRI------------------------------VHA-AD--MTGREIERALLEAVVSDPNISVFEHHFAIDLLTTL 245 (647)
Q Consensus 199 g~~~~r~------------------------------~~~-~~--~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~ 245 (647)
+++..+. .+. .. ..|..++..|.+.+++ .|++++.++.+++|+.+
T Consensus 173 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~l~~aL~~~~~~-~Gv~i~~~t~v~~Li~~- 250 (578)
T PRK12843 173 GMMVDRTDVGHLLALTKSWRAFRHAVRLLARYARDRISYARGTRLVMGNALIGRLLYSLRA-RGVRILTQTDVESLETD- 250 (578)
T ss_pred cccccHHHHHHHHHhhcChhhHHHHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHh-CCCEEEeCCEEEEEEee-
Confidence 2222110 000 00 1367788999999987 59999999999999976
Q ss_pred CCCCCeEEEEEEEecCCCeEEEEEc-CeEEECCCccccc------------CCCCCCCCCCcchHHHHHHHcCCeecCcc
Q 006387 246 DGPDAVCHGVDTLNVETQEVVRFIS-KVTLLASGGAGHI------------YPSTTNPLVATGDGMAMAHRAQAVISNME 312 (647)
Q Consensus 246 ~g~~~~v~Gv~~~~~~~g~~~~i~A-k~VVlAtGg~~~~------------~~~~~~~~~~tGdg~~~a~~aGa~l~~~e 312 (647)
++ +|+||.+.+ +++.+.|.| +.|||||||++.+ +..++++..++|||+.|++++||.+.++.
T Consensus 251 ~g---~V~GV~~~~--~g~~~~i~A~~~VVlAtGg~~~n~em~~~~~p~~~~~~~~~~~~~tGdGi~ma~~~Ga~~~~~~ 325 (578)
T PRK12843 251 HG---RVIGATVVQ--GGVRRRIRARGGVVLATGGFNRHPQLRRELLPAAVARYSPGAPGHTGAAIDLALDAGARYGRGL 325 (578)
T ss_pred CC---EEEEEEEec--CCeEEEEEccceEEECCCCcccCHHHHHHhCCCCcccccCCCCCCCcHHHHHHHHhCCCccccC
Confidence 55 899998753 566677887 7999999999985 34456778899999999999999987653
Q ss_pred cc--ccccccccCCCCCCCCCCCCCccceeeecccC-CCceEEeCCCCccccccccccccCchhHHHHHHHHHHHhcC--
Q 006387 313 FV--QFHPTALADEGLPIKPKKTRENSFLITEAVRG-DGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRN-- 387 (647)
Q Consensus 313 ~~--q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~-~g~~~vn~~G~rf~~~~~~~~~l~~rd~~~~~i~~~~~~~~-- 387 (647)
.. .+.|........ . .. ..+......++ .++++||.+|+||+++.. +++.++.++........
T Consensus 326 ~~~~~~~~~~~~~~~~-~-~~----~~~~~~~~~~~~~g~I~VN~~GkRF~nE~~------~~~~~~~~~~~~~~~~~~~ 393 (578)
T PRK12843 326 LSNAFWAPVSVRRRAD-G-ST----AVFPHFYLDRGKPGTIAVNQQGRRFVNEST------SYHLFGTAMFAAGKTSPGI 393 (578)
T ss_pred cccceecccccccCCC-C-cc----ccccchhhhccCCCeEEECCCCCccccCCc------cHHHHHHHHHhhccCCCCc
Confidence 21 122332111000 0 00 00000000122 468999999999998643 33334443332211001
Q ss_pred CCeEEEecCCCC-------------hhHH-----HhhChhHHHHHHHc--------------------CCCCC-------
Q 006387 388 EKYVLLDISHKP-------------TEKI-----LSHFPNIAAECLKY--------------------GLDIT------- 422 (647)
Q Consensus 388 ~~~v~ld~~~~~-------------~~~l-----~~~~~~~~~~~~~~--------------------G~d~~------- 422 (647)
..++.+|..... .+.. ..+..++.+++++. |.|++
T Consensus 394 ~~~~I~D~~~~~~~~~~~~~~~~~~~~~~~~~g~~~kadTleELA~~~gid~~~L~~Tv~~yN~~~~~G~D~dFgr~~~~ 473 (578)
T PRK12843 394 PAYLITDAEFLRKYGLGMVRPGGRGLAPFLRDGYLTVASTLDELAPKLGIDPAALAATVQRHNQYARTGIDPDFGRGATA 473 (578)
T ss_pred cEEEEEChHHHhhcCcccCCCCCcCcHhHhhcCceeecCCHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCcccCCCcch
Confidence 112233321100 0000 00112333333333 33321
Q ss_pred --------------------CCC---eeeeeeeceecCceEECCCCC------cccCceeecccccCCCCCCCCccc-hh
Q 006387 423 --------------------SQP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANRLA-SN 472 (647)
Q Consensus 423 --------------------~~~---i~v~p~~~~~~GGi~vD~~~~------T~ipGLyAaGe~a~~g~~Ga~rl~-g~ 472 (647)
+.| +++.|..+.|+||++||+++| ++||||||||+++ +|++|.+|++ |+
T Consensus 474 ~~~~~~~~~~~~~~~l~pi~~~PfYA~~~~p~~~~T~GGl~in~~~qVld~dg~pIpGLYAaG~~~-gg~~g~~y~~~G~ 552 (578)
T PRK12843 474 YQRMNGDAMIGPNPNLGPIETAPFYAVRLYPGDIGAATGLVTDASARVLNADGQPISGLYACGNDM-ASIMGGTYPGPGI 552 (578)
T ss_pred hhcccCCcccCCCCcccccCCCCeEEEEecCCccccCCCccCCCCceEECCCCCCcCCceeccccc-cccccCCCCCccc
Confidence 122 566778899999999999998 5899999999998 7999998865 78
Q ss_pred hhHHHHHHHHHHHHHHHHhhh
Q 006387 473 SLLEALVFARRAVQPSIDHKK 493 (647)
Q Consensus 473 sl~~a~v~G~~Ag~~a~~~~~ 493 (647)
++++|++|||+||++|+++++
T Consensus 553 ~lg~a~~fGriAg~~aa~~~~ 573 (578)
T PRK12843 553 TLGPAIVFAYLAARHAAKRTL 573 (578)
T ss_pred chHHHHHHHHHHHHHHHHhhh
Confidence 899999999999999988753
No 52
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=100.00 E-value=4.5e-38 Score=350.39 Aligned_cols=380 Identities=23% Similarity=0.298 Sum_probs=256.5
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeec-------CCCCCHHHHHHHHHHhcccC
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVAGAYL 157 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~-------~~~d~~~~~~~~~~~~g~~~ 157 (647)
+.++||||||+|++|++||+.|++.| +|+||||....+|++..+.|+++... +..++.+....+........
T Consensus 5 ~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 84 (557)
T PRK07843 5 VQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTARSGGGVWIPNNEVLKRAGVPDTPEAARTYLHSIVGDV 84 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCccccccCceeecCCHHHHHHCCCHHHHHHHHHHHHHHhhhh
Confidence 45799999999999999999999999 99999999888888888877765432 22455666666666655566
Q ss_pred CCHHHHHHHHHHhHHHHHHHHHc-CCCcccCC-CCCccccccCCccccceee----------------------------
Q 006387 158 CDDETVRVVCTEGPDRIRELIAI-GASFDRGE-DGNLHLAREGGHSHHRIVH---------------------------- 207 (647)
Q Consensus 158 ~~~~~~~~~~~~~~~~i~~l~~~-Gv~~~~~~-~g~~~~~~~gg~~~~r~~~---------------------------- 207 (647)
.+++.++.+.+..++.++|+.+. +..+.... .+.+.....++....|.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~ 164 (557)
T PRK07843 85 VPPERIDAYLDRGPEMLSFVLAHSPLKLCWVPGYSDYYPEAPGGRPGGRSIEPKPFDARKLGADLAGLEPPYGKVPLNMV 164 (557)
T ss_pred cCHHhhhhHHhcChHHHHHHHhcCCceEEecCCCCCcCCCCCCCCCCCceecCCCCChhhhhhHHHHhcccccccccccc
Confidence 78899999999999999998874 43332100 0000000000000000000
Q ss_pred -------------------------------------ccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCC
Q 006387 208 -------------------------------------AADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDA 250 (647)
Q Consensus 208 -------------------------------------~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~ 250 (647)
.....+..+...|.+.+++ .|+++++++.+++|+.+ ++
T Consensus 165 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~-~gv~v~~~t~v~~l~~~-~g--- 239 (557)
T PRK07843 165 VMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLLGMGQALAAGLRIGLQR-AGVPVLLNTPLTDLYVE-DG--- 239 (557)
T ss_pred ccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHHc-CCCEEEeCCEEEEEEEe-CC---
Confidence 0001245567777777776 59999999999999986 55
Q ss_pred eEEEEEEEecCCCeEEEEEcC-eEEECCCcccc------cCC-------CCCCCCCCcchHHHHHHHcCCeecCcccccc
Q 006387 251 VCHGVDTLNVETQEVVRFISK-VTLLASGGAGH------IYP-------STTNPLVATGDGMAMAHRAQAVISNMEFVQF 316 (647)
Q Consensus 251 ~v~Gv~~~~~~~g~~~~i~Ak-~VVlAtGg~~~------~~~-------~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~ 316 (647)
+|+||.+.. +++.+.|+|+ .|||||||+.. .|. .+.++..+||||+.|++++||.+.+|++.|+
T Consensus 240 ~v~Gv~~~~--~g~~~~i~A~~~VIlAtGG~~~n~~m~~~~~~~~~~~~~~~~~~~~tGdG~~ma~~aGA~l~~m~~~~~ 317 (557)
T PRK07843 240 RVTGVHAAE--SGEPQLIRARRGVILASGGFEHNEQMRAKYQRAPIGTEWTVGAKANTGDGILAGEKLGAALDLMDDAWW 317 (557)
T ss_pred EEEEEEEEe--CCcEEEEEeceeEEEccCCcCcCHHHHHHhcCCcccCcccCCCCCCCcHHHHHHHHcCCCccCchhhcc
Confidence 899998753 5667789996 79999999987 231 2456778999999999999999999999999
Q ss_pred ccccccCCCCCCCCCCCCCccceeeecccCCCceEEeCCCCccccccccccccCchhHHHHHHHH----HHHh-cC--CC
Q 006387 317 HPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDD----QLKK-RN--EK 389 (647)
Q Consensus 317 ~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~l~~rd~~~~~i~~----~~~~-~~--~~ 389 (647)
+|+.....+ + .+.+.+. ..+++++||.+|+||++++. +++.+..++.. .... +. ..
T Consensus 318 ~p~~~~~~~----~------~~~~~~~-~~~g~i~VN~~G~RF~nE~~------~~~~~~~a~~~~~~~~~~~~~~~~~~ 380 (557)
T PRK07843 318 GPTIPLPGG----P------WFALSER-NLPGSIIVNMSGKRFMNESA------PYVEAVHHMYGGEYGQGPGPGENIPA 380 (557)
T ss_pred CCccccCCC----c------chhhhhh-ccCCeEEECCCCCcccCCCC------cHHHHHHHHHhhccccccCCCCCceE
Confidence 987542111 1 1222221 12578999999999998653 33444444431 1000 00 11
Q ss_pred eEEEecCCC--------------ChhHHH----hhChhHHHHHHHcCCC--------------------CC---------
Q 006387 390 YVLLDISHK--------------PTEKIL----SHFPNIAAECLKYGLD--------------------IT--------- 422 (647)
Q Consensus 390 ~v~ld~~~~--------------~~~~l~----~~~~~~~~~~~~~G~d--------------------~~--------- 422 (647)
++.+|.... +.+.+. .+.+++.+++++.|+| ++
T Consensus 381 ~~I~D~~~~~~~~~~~~~~~~~~~~~~~~~g~~~kadTleELA~~~gid~~~L~aTV~~yN~~~~~G~D~~Fgr~~~~~~ 460 (557)
T PRK07843 381 WLVFDQRYRDRYLFAGLQPRQPIPSRWLESGVIVKADTLAELAAKIGVPADALTATVQRFNGFARSGVDEDFHRGESAYD 460 (557)
T ss_pred EEEECchHHhhcCcCcCCCCCCCcHHHhhcCceeecCCHHHHHHHcCCCHHHHHHHHHHHHHHhhcCCCcccCCCCcccc
Confidence 233442210 000000 1223444444443333 11
Q ss_pred ------------------CCC---eeeeeeeceecCceEECCCCC------cccCceeecccccCCCCCCCCccc-hhhh
Q 006387 423 ------------------SQP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANRLA-SNSL 474 (647)
Q Consensus 423 ------------------~~~---i~v~p~~~~~~GGi~vD~~~~------T~ipGLyAaGe~a~~g~~Ga~rl~-g~sl 474 (647)
+.| +++.|..+.|+||++||+++| .+||||||||+++ +|++|.+|++ |+++
T Consensus 461 ~~~~~~~~~~~~~l~~i~~~PfYA~~~~~~~~~T~GGl~id~~~qVld~~g~pIpGLYAaG~~~-gg~~g~~Y~~~G~~~ 539 (557)
T PRK07843 461 RYYGDPTNKPNPNLGELSHAPFYAAKMVPGDLGTKGGLRTDVRGRVLRDDGSVIEGLYAAGNVS-APVMGHTYAGPGATI 539 (557)
T ss_pred cccCCCCCCCCcccccccCCCeEEEEEecccceeCCCceECCCceEECCCCCCcCCceeccccc-cccccCCcCccccch
Confidence 122 566788899999999999998 5899999999998 7999999987 8899
Q ss_pred HHHHHHHHHHHHHHHH
Q 006387 475 LEALVFARRAVQPSID 490 (647)
Q Consensus 475 ~~a~v~G~~Ag~~a~~ 490 (647)
++|++|||+||++|++
T Consensus 540 ~~a~~~GriAg~~aa~ 555 (557)
T PRK07843 540 GPAMTFGYLAALDIAA 555 (557)
T ss_pred hhHHHHHHHHHHHHhh
Confidence 9999999999999875
No 53
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=100.00 E-value=1.2e-37 Score=348.80 Aligned_cols=389 Identities=21% Similarity=0.232 Sum_probs=253.0
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeec-------CCCCCHHHHHHHHHHhcccC
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVAGAYL 157 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~-------~~~d~~~~~~~~~~~~g~~~ 157 (647)
+.++||||||+|+||++||+.|+++| +|+||||....+|++.++.|.+.... +..|+++.+..++.+...+.
T Consensus 7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~~s~g~~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~ 86 (574)
T PRK12842 7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTAFSGGVLWIPGNPHAREAGVADSREAARTYLKHETGAF 86 (574)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccceeCcEeccCCChHHHhcCcchhHHHHHHHHHHhcCCC
Confidence 45799999999999999999999999 99999999998888888766544321 23577888877776666778
Q ss_pred CCHHHHHHHHHHhHHHHHHHHH-cCCCcccCCCCCccccccCCccccceee-----------------------------
Q 006387 158 CDDETVRVVCTEGPDRIRELIA-IGASFDRGEDGNLHLAREGGHSHHRIVH----------------------------- 207 (647)
Q Consensus 158 ~~~~~~~~~~~~~~~~i~~l~~-~Gv~~~~~~~g~~~~~~~gg~~~~r~~~----------------------------- 207 (647)
.++++++.+++++.+.++||++ .|+.|.......+.....++....|.++
T Consensus 87 ~~~~~~~~~~~~~~~~i~wl~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~ 166 (574)
T PRK12842 87 FDAAAVEAFLDNGPEMVEFFERETEVKFVPTLYPDYHPDAPGGVDIGRSILAAPYDIRGLGKDMARLRPPLKTITFIGMM 166 (574)
T ss_pred CCHHHHHHHHhccHHHHHHHHhCCCCceeeCCCCCCCCCCCCccCCCccccCCCCChhhhhhhHHhhcCCccccccccee
Confidence 8999999999999999999986 6888853211111000011110000000
Q ss_pred --------------------------------------cc---CCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCC
Q 006387 208 --------------------------------------AA---DMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLD 246 (647)
Q Consensus 208 --------------------------------------~~---~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~ 246 (647)
.. -..|..+...|.+.+++ .|++|+.++.|++|+.+ +
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~-~Gv~i~~~~~v~~l~~~-~ 244 (574)
T PRK12842 167 FNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALD-LGIPILTGTPARELLTE-G 244 (574)
T ss_pred cccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHh-CCCEEEeCCEEEEEEee-C
Confidence 00 01356678888888877 59999999999999986 5
Q ss_pred CCCCeEEEEEEEecCCCeEEEEEc-CeEEECCCccc-------ccCCC--------CCCCCCCcchHHHHHHHcCCeecC
Q 006387 247 GPDAVCHGVDTLNVETQEVVRFIS-KVTLLASGGAG-------HIYPS--------TTNPLVATGDGMAMAHRAQAVISN 310 (647)
Q Consensus 247 g~~~~v~Gv~~~~~~~g~~~~i~A-k~VVlAtGg~~-------~~~~~--------~~~~~~~tGdg~~~a~~aGa~l~~ 310 (647)
+ +|+||.+.+ .++ ...+.| +.|||||||++ .+++. ++++..+||||+.|++++||.+.+
T Consensus 245 g---~V~GV~~~~-~~~-~~~i~a~k~VVlAtGg~~~n~~~~~~~~~~~~~~~~~~~~~~~~~tGdG~~ma~~~Ga~l~~ 319 (574)
T PRK12842 245 G---RVVGARVID-AGG-ERRITARRGVVLACGGFSHDLARIARAYPHLARGGEHLSPVPAGNTGDGIRLAEAVGGAVDI 319 (574)
T ss_pred C---EEEEEEEEc-CCc-eEEEEeCCEEEEcCCCccchHHHHHHhcccCcCCcccccCCCCCCCcHHHHHHHHhCCCccc
Confidence 5 899998875 233 346788 58999999999 44443 456778999999999999999864
Q ss_pred cc--ccccccccccCCCCCCCCCCCCCccceeeecccCCCceEEeCCCCccccccccccccCchhHHHHHHHHHHHhcC-
Q 006387 311 ME--FVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRN- 387 (647)
Q Consensus 311 ~e--~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~l~~rd~~~~~i~~~~~~~~- 387 (647)
+. ...++|....... .. +.. .. ..+. .....+.++||.+|+||+++... .+.+..++........
T Consensus 320 ~~~~~~~~~~~~~~~~~-~~-~~~-~~-~~~~--~~~~~g~i~Vn~~G~RF~nE~~~------~~~~~~~~~~~~~~~~~ 387 (574)
T PRK12842 320 RFPDAAAWMPVSKVPLG-GG-RTG-VF-PHLL--DRYKPGVIGVLRNGKRFTNESNS------YHDVGAAMIRACEGQKE 387 (574)
T ss_pred CCcccccccccccccCC-CC-ccc-cc-cccc--cccCCceEEECCCCCCccCCCCc------HhHHHHHHHHhcccCCC
Confidence 31 1112222110000 00 000 00 0000 01224679999999999987532 2223333222111111
Q ss_pred -CCeEEEecCCC-------------ChhHHH-----hhChhHHHHHHHc--------------------CCCC-------
Q 006387 388 -EKYVLLDISHK-------------PTEKIL-----SHFPNIAAECLKY--------------------GLDI------- 421 (647)
Q Consensus 388 -~~~v~ld~~~~-------------~~~~l~-----~~~~~~~~~~~~~--------------------G~d~------- 421 (647)
..++.+|.... ..+... .+..++.+++++. |.|+
T Consensus 388 ~~~~~I~D~~~~~~~~~~~~~~~~~~~~~~~~~g~~~kadTleELA~~~gid~~~L~~Tv~~yN~~~~~G~D~~Fgr~~~ 467 (574)
T PRK12842 388 TAMWLICDRATLRKYGLGYAKPAPMPVGPLLRNGYLIKGDTLAELAGKAGIDAAGLEATVRRYNEGAVKGIDPAFGRGST 467 (574)
T ss_pred ccEEEEEcHHHHhhcCcccCCCCCCChHHHHhcCcEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence 11233332100 000000 0112222332222 3221
Q ss_pred --------------------CCCC---eeeeeeeceecCceEECCCCC------cccCceeecccccCCCCCCCCccc-h
Q 006387 422 --------------------TSQP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANRLA-S 471 (647)
Q Consensus 422 --------------------~~~~---i~v~p~~~~~~GGi~vD~~~~------T~ipGLyAaGe~a~~g~~Ga~rl~-g 471 (647)
.+.| +++.|..+.|+||++||+++| ++||||||||+++ +|++|.+|.+ |
T Consensus 468 ~~~~~~~~~~~~~~~~l~~i~~~PfYA~~~~~~~~~T~GGl~id~~~qVld~~g~pIpGLYAaG~~~-gg~~g~~y~~~G 546 (574)
T PRK12842 468 SFNRYLGDPDHKPNPCVAPIGSGPFYAVKVIMGDLGTFDGLRTDVTGEVLDADGTPIAGLYAVGNDR-ASIMGGNYPGAG 546 (574)
T ss_pred hhhhhcCCcccCCCcccccCCCCCEEEEEecccccccCCCcCCCCCceEECCCCCCcCCceeccccc-ccCccCCCCCCc
Confidence 1223 566778889999999999998 6899999999998 7999999987 9
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhc
Q 006387 472 NSLLEALVFARRAVQPSIDHKKS 494 (647)
Q Consensus 472 ~sl~~a~v~G~~Ag~~a~~~~~~ 494 (647)
++++.|++|||+||++|++.++.
T Consensus 547 ~~lg~a~~fGriAg~~aa~~~~~ 569 (574)
T PRK12842 547 ITLGPIMTFGYITGRHLAGVAGG 569 (574)
T ss_pred ccHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999987644
No 54
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=100.00 E-value=3.7e-36 Score=336.68 Aligned_cols=388 Identities=21% Similarity=0.248 Sum_probs=253.7
Q ss_pred CccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeec-------CCCCCHHHHHHHHHHhccc
Q 006387 85 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVAGAY 156 (647)
Q Consensus 85 ~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~-------~~~d~~~~~~~~~~~~g~~ 156 (647)
++.++||||||+|++|++||+.|+++| +|+||||....+|++..+.|.++... +..++.+..+.++.....+
T Consensus 9 ~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 88 (581)
T PRK06134 9 PDLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAWSGGWMWIPRNPLARRAGIVEDIEQPRTYLRHELGA 88 (581)
T ss_pred CCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCccccccCceeecCccHHhhhccccchHHHHHHHHHHHhCc
Confidence 456899999999999999999999999 99999999888888877776655432 2246677776666665566
Q ss_pred CCCHHHHHHHHHHhHHHHHHHHH-cCCCcccCCC-CCccc----cccCCccc---------------------cce----
Q 006387 157 LCDDETVRVVCTEGPDRIRELIA-IGASFDRGED-GNLHL----AREGGHSH---------------------HRI---- 205 (647)
Q Consensus 157 ~~~~~~~~~~~~~~~~~i~~l~~-~Gv~~~~~~~-g~~~~----~~~gg~~~---------------------~r~---- 205 (647)
..++++++.+++++.+.++||++ .|++|..... ..+.. ...++.+. ++.
T Consensus 89 ~~~~~l~~~~~~~s~~~~~wl~~~~gv~~~~~~~~~d~~~~~~~~~~ggr~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g 168 (581)
T PRK06134 89 RYDAARIDAFLEAGPHMVAFFERHTALRFADGNAIPDYHGDTPGAATGGRSLIAAPFDGRELGALLERLRKPLRETSFMG 168 (581)
T ss_pred CCCHHHHHHHHhccHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCCCCCeeccCCCChhhhhHHHHHhccccccccccc
Confidence 78999999999999999999987 5788742110 00000 00000000 000
Q ss_pred -------------------------------------eec---cCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC
Q 006387 206 -------------------------------------VHA---ADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTL 245 (647)
Q Consensus 206 -------------------------------------~~~---~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~ 245 (647)
.+. ....|..++..|.+.+++. |++|+.+++|++|+.+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~~~-Gv~i~~~t~v~~l~~~- 246 (581)
T PRK06134 169 MPIMAGADLAAFLNPTRSFRAFLHVARRFARHLIDLARHGRGMHLVNGNALVARLLKSAEDL-GVRIWESAPARELLRE- 246 (581)
T ss_pred cccccHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHhC-CCEEEcCCEEEEEEEe-
Confidence 000 0123567888898888874 9999999999999986
Q ss_pred CCCCCeEEEEEEEecCCCeEEEEEc-CeEEECCCcccc-------cCCC--------CCCCCCCcchHHHHHHHcCCeec
Q 006387 246 DGPDAVCHGVDTLNVETQEVVRFIS-KVTLLASGGAGH-------IYPS--------TTNPLVATGDGMAMAHRAQAVIS 309 (647)
Q Consensus 246 ~g~~~~v~Gv~~~~~~~g~~~~i~A-k~VVlAtGg~~~-------~~~~--------~~~~~~~tGdg~~~a~~aGa~l~ 309 (647)
++ +|+||.+.+ +++.+.|+| |.|||||||++. +++. +.++..+||||+.|+.++||.+.
T Consensus 247 ~g---~v~GV~~~~--~~~~~~i~a~k~VVlAtGg~~~n~~~~~~~~p~~~~~~~~~~~~~~~~tGDGi~ma~~~GA~~~ 321 (581)
T PRK06134 247 DG---RVAGAVVET--PGGLQEIRARKGVVLAAGGFPHDPARRAALFPRAPTGHEHLSLPPPGNSGDGLRLGESAGGVVA 321 (581)
T ss_pred CC---EEEEEEEEE--CCcEEEEEeCCEEEEcCCCcccCHHHHHHhcCCCCCCCCccccCCCCCCChHHHHHHHhCCCcc
Confidence 55 899998764 344557899 999999999986 3442 34567899999999999999986
Q ss_pred C-c-cccccccccccCCCCCCCCCCCCCccceeeecccCCCceEEeCCCCccccccccccccCchhHHHHHHHHHHHhcC
Q 006387 310 N-M-EFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRN 387 (647)
Q Consensus 310 ~-~-e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~l~~rd~~~~~i~~~~~~~~ 387 (647)
. + .+.+++|+.+...... .. .....++. ....|.++||.+|+||+++... +..+..++.......+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~g--~~--~~~~~~~~--~~~~g~i~VN~~G~RF~nE~~~------~~~~~~~~~~~~~~~~ 389 (581)
T PRK06134 322 TDLASPVAWAPVSLVPHADG--SV--GHFPHIIE--RGKPGLIGVLANGKRFVNEADS------YHDYVAAMFAATPPGQ 389 (581)
T ss_pred CCCCcccccccccccCCCCC--cc--cccccccc--cCCCCeEEECCCCCcccCCCcc------hhhHHHHHHHhcCCCC
Confidence 3 3 3567787654321000 00 00001111 1125689999999999986432 2122233322111101
Q ss_pred --CCeEEEecCC-------------CChhHHH-----hhChhHHHHHHHc--------------------CCCCC-----
Q 006387 388 --EKYVLLDISH-------------KPTEKIL-----SHFPNIAAECLKY--------------------GLDIT----- 422 (647)
Q Consensus 388 --~~~v~ld~~~-------------~~~~~l~-----~~~~~~~~~~~~~--------------------G~d~~----- 422 (647)
..++.+|... .+.+... .+..++.+++++. |.|++
T Consensus 390 ~~~~~~I~D~~~~~~~~~~~~~~~~~~~~~~~~~g~~~kadTleELA~~~gid~~~L~~Tv~~yN~~~~~G~D~dFgr~~ 469 (581)
T PRK06134 390 PVRSWLICDHRFLRRYGLGHIRPAPLPLGPYVRSGYLKRGASLEELARACGIDPDGLEATVARYNRHARNGQDPDFGRGS 469 (581)
T ss_pred CccEEEEECHHHHhhcCccccCCCCCChHHHhhCCCEEecCCHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCcccCCCC
Confidence 1123333210 0000000 0112233332222 33221
Q ss_pred -----------------------CCC---eeeeeeeceecCceEECCCCC------cccCceeecccccCCCCCCCCc-c
Q 006387 423 -----------------------SQP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANR-L 469 (647)
Q Consensus 423 -----------------------~~~---i~v~p~~~~~~GGi~vD~~~~------T~ipGLyAaGe~a~~g~~Ga~r-l 469 (647)
+.| +++.|..+.|+||++||+++| ++||||||||+++ +|++|.++ .
T Consensus 470 ~~~~~~~~~~~~~~~~~~l~pi~~gPfYA~~~~~~~~~T~GGl~id~~~qVld~~g~pIpGLYAaG~~~-gg~~g~~y~~ 548 (581)
T PRK06134 470 TPYNRKQGDPAHGGPNPCVAPIEHGPFYAVKVLPGCLGTFAGLKTDADARVLDQAGQPIPGLYAAGNDM-ASVMGGFYPS 548 (581)
T ss_pred chhhcccCCcccCCCCcccCcCCCCCeEEEEeeccccccCCCccCCCCCceECCCCCCcCcceeccccc-cccccCCcCC
Confidence 122 566778899999999999998 5899999999998 68877655 5
Q ss_pred chhhhHHHHHHHHHHHHHHHHhh
Q 006387 470 ASNSLLEALVFARRAVQPSIDHK 492 (647)
Q Consensus 470 ~g~sl~~a~v~G~~Ag~~a~~~~ 492 (647)
+|+++++|++|||+||++|++..
T Consensus 549 ~G~~lg~a~~fGriAg~~aa~~~ 571 (581)
T PRK06134 549 GGITLGPALTFGYIAGRHIAGAS 571 (581)
T ss_pred cchhHHHHHHHHHHHHHHHhhcC
Confidence 78899999999999999998754
No 55
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.96 E-value=1.3e-26 Score=234.69 Aligned_cols=346 Identities=21% Similarity=0.266 Sum_probs=220.2
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHHH-
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR- 164 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~- 164 (647)
..+||+|||||+|||+||+.|++.| +|+|+|+++..+-.-..++||-|.+.+... +..++...- -+...++
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~-~~~~ls~~p------~~~~fl~s 74 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEA-PDEFLSRNP------GNGHFLKS 74 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCcccccccc-HHHHHHhCC------CcchHHHH
Confidence 3589999999999999999999999 999999999887777778888888776655 666554321 1112222
Q ss_pred HHHHHh-HHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEe
Q 006387 165 VVCTEG-PDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLT 243 (647)
Q Consensus 165 ~~~~~~-~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~ 243 (647)
.+.... .+.++|.+.+|+++.....|+++ +.......++++|+.++++ .||++++++.|.++..
T Consensus 75 al~~ft~~d~i~~~e~~Gi~~~e~~~Gr~F--------------p~sdkA~~Iv~~ll~~~~~-~gV~i~~~~~v~~v~~ 139 (408)
T COG2081 75 ALARFTPEDFIDWVEGLGIALKEEDLGRMF--------------PDSDKASPIVDALLKELEA-LGVTIRTRSRVSSVEK 139 (408)
T ss_pred HHHhCCHHHHHHHHHhcCCeeEEccCceec--------------CCccchHHHHHHHHHHHHH-cCcEEEecceEEeEEe
Confidence 222222 46688999999999877776543 2334678899999999998 4999999999999998
Q ss_pred cCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchHHHHHHHcCCeecCccccccccccccC
Q 006387 244 TLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALAD 323 (647)
Q Consensus 244 ~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~ 323 (647)
++++ ...++.+|+ +|+|+.+|+||||.+ ||.+. +||+|+..|...|..+.... |+.+.-
T Consensus 140 ~~~~--------f~l~t~~g~--~i~~d~lilAtGG~S--~P~lG----stg~gy~iA~~~G~~I~~~r-----palvpf 198 (408)
T COG2081 140 DDSG--------FRLDTSSGE--TVKCDSLILATGGKS--WPKLG----STGFGYPIARQFGHTITPLR-----PALVPF 198 (408)
T ss_pred cCce--------EEEEcCCCC--EEEccEEEEecCCcC--CCCCC----CCchhhHHHHHcCCccccCc-----cccCCc
Confidence 7422 223445665 699999999999988 77764 89999999999998876543 322210
Q ss_pred CCCCCCCCCCCCccceeeecccC---CC--ceEEeCCCCcccccc--ccccccCch-hHHHHHHHHHHHhcCCCeEEEec
Q 006387 324 EGLPIKPKKTRENSFLITEAVRG---DG--GILYNLGMERFMPLY--DERAELAPR-DVVARSIDDQLKKRNEKYVLLDI 395 (647)
Q Consensus 324 ~g~~~~p~~~~~~~~l~~e~~~~---~g--~~~vn~~G~rf~~~~--~~~~~l~~r-d~~~~~i~~~~~~~~~~~v~ld~ 395 (647)
. ..+ .++ +.+.+ .. ..+.+.+|..|..+. -.++-..|- -..+..... ..+.++..+.+|+
T Consensus 199 t--------~~~-~~~--~~l~gls~~~v~~~v~~~~g~~~~g~~LfTh~GiSGPavl~~Ss~~~~-~~~~~~~~i~iDl 266 (408)
T COG2081 199 T--------LDE-SFL--ERLAGLSLKSVPLSVTAGKGITFQGDLLFTHRGLSGPAVLQLSSYWRL-LEKKGGATLSIDL 266 (408)
T ss_pred c--------CCH-HHH--HHhcCCcccceEEEEecCCCceeecceEEEecCCcHHHHHHHHHHHHH-hccCCCceEEEec
Confidence 0 000 000 11111 01 112222222222110 000101111 012333332 3344456788887
Q ss_pred CC-CChhHHHhh-----------------Chh--HHHHHHHcCCCCCCC-----------------Ceeeee-------e
Q 006387 396 SH-KPTEKILSH-----------------FPN--IAAECLKYGLDITSQ-----------------PIPVVP-------A 431 (647)
Q Consensus 396 ~~-~~~~~l~~~-----------------~~~--~~~~~~~~G~d~~~~-----------------~i~v~p-------~ 431 (647)
.. .+.+.+... +|. +.-++++.|+ +.+. -+++.| .
T Consensus 267 lP~~~~~~l~~~l~~~~~~kslkn~L~~~lp~rlv~~~l~~~~i-~~~~~~~ls~~~~~~l~~~ik~~~i~~~Gt~~~~~ 345 (408)
T COG2081 267 LPDVDAEELLRELRRANPKKSLKNALAKLLPKRLVEFLLERAGI-PDEPLAQLSPKELAQLAAALKAWPITPNGTEPYRE 345 (408)
T ss_pred CCCCCHHHHHHHHHhhChhhHHHHHHHHHhhhHHHHHHHHhccC-CCcchhhcCHHHHHHHHHHHhcCeeeccCCcccce
Confidence 63 444433211 110 1122345566 3210 123332 2
Q ss_pred eceecCceEEC---CC-CC-cccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhh
Q 006387 432 AHYMCGGVRAG---LQ-GE-TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHK 492 (647)
Q Consensus 432 ~~~~~GGi~vD---~~-~~-T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~ 492 (647)
+..|.|||.++ .+ ++ ..+||||.|||+. .++| ++||..+.+|+++|+.||+.++++.
T Consensus 346 A~VT~GGV~~~eid~kTmesk~vPGLyf~GEvl--Dv~g--~tGGYN~q~A~asG~~Ag~~~~~~~ 407 (408)
T COG2081 346 AEVTAGGVDTKEIDSKTMESKKVPGLYFAGEVL--DVTG--WTGGYNFQWAWASGWAAGQGAAAWL 407 (408)
T ss_pred eEEecCceehhhcCHHHHHhhcCCCcEEEEEEE--Eecc--CCCcHHHHHHHHHHHHHHHhhhhhc
Confidence 56789999854 44 33 4799999999997 7776 5789999999999999999988764
No 56
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.93 E-value=2.9e-25 Score=235.78 Aligned_cols=341 Identities=22% Similarity=0.258 Sum_probs=183.9
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHHHHHH
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 167 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~ 167 (647)
|||+|||||+|||+||+.|++.| +|+|+||++..+-....+++|-|...+...++..+...+ ..+++.++...
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~------~~~~~f~~~~l 74 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGY------GRNPKFLKSAL 74 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-------TBTTTCTHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhc------ccchHHHHHHH
Confidence 79999999999999999999999 999999998775444445556666555333333322111 11122222211
Q ss_pred H--HhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC
Q 006387 168 T--EGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTL 245 (647)
Q Consensus 168 ~--~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~ 245 (647)
. ...+.+.++.++|+++...++|+++ +.......++..|...+++ .||+|+.+++|.++..++
T Consensus 75 ~~f~~~d~~~ff~~~Gv~~~~~~~gr~f--------------P~s~~a~~Vv~~L~~~l~~-~gv~i~~~~~V~~i~~~~ 139 (409)
T PF03486_consen 75 KRFSPEDLIAFFEELGVPTKIEEDGRVF--------------PKSDKASSVVDALLEELKR-LGVEIHFNTRVKSIEKKE 139 (409)
T ss_dssp HHS-HHHHHHHHHHTT--EEE-STTEEE--------------ETT--HHHHHHHHHHHHHH-HT-EEE-S--EEEEEEET
T ss_pred hcCCHHHHHHHHHhcCCeEEEcCCCEEC--------------CCCCcHHHHHHHHHHHHHH-cCCEEEeCCEeeeeeecC
Confidence 1 1246788999999998766666543 3344577899999999988 499999999999999874
Q ss_pred CCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchHHHHHHHcCCeecCccccccccccccCCC
Q 006387 246 DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEG 325 (647)
Q Consensus 246 ~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g 325 (647)
+ .+..|.. .+++ .+.|+.|||||||.+ ||.+ +++|+|+.+|.+.|..++.. .|..+.-.-
T Consensus 140 ~----~~f~v~~---~~~~--~~~a~~vILAtGG~S--~p~~----GS~G~gy~~a~~lGh~i~~~-----~PaL~~l~~ 199 (409)
T PF03486_consen 140 D----GVFGVKT---KNGG--EYEADAVILATGGKS--YPKT----GSDGSGYRIAKKLGHTITPP-----YPALVPLKC 199 (409)
T ss_dssp T----EEEEEEE---TTTE--EEEESEEEE----SS--SGGG----T-SSHHHHHHHHTT--EEEE-----EEES--EE-
T ss_pred C----ceeEeec---cCcc--cccCCEEEEecCCCC--cccc----CCCcHHHHHHHHCCCcEecC-----CCccCCeee
Confidence 3 4555654 2333 699999999999988 6665 48999999999999887543 333221000
Q ss_pred CCCCCCCCCCccc--eeeecccCCCceEEeCCCCccccccccccccC--------ch-hHHHHHHHHHHHhcCCCeEEEe
Q 006387 326 LPIKPKKTRENSF--LITEAVRGDGGILYNLGMERFMPLYDERAELA--------PR-DVVARSIDDQLKKRNEKYVLLD 394 (647)
Q Consensus 326 ~~~~p~~~~~~~~--l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~l~--------~r-d~~~~~i~~~~~~~~~~~v~ld 394 (647)
.+... .-...++-...+..- +++.-..+ .+|+. |- -.+|+.+...+.+.....+.+|
T Consensus 200 --------~~~~~~~~~l~Gv~~~~~~~~~-~~~~~~~~---~GellfT~~GiSGp~il~lS~~~~~~l~~~~~~~i~id 267 (409)
T PF03486_consen 200 --------DEPWLFFKELSGVRLKAVISLL-DGKKKASE---TGELLFTHYGISGPAILQLSRFIARALNKKKKVEISID 267 (409)
T ss_dssp ---------HHHHHTGGGTT-EEEEEEEEE--ECTCEEE---EEEEEE-SSEEESHHHHHHTTTHHHHHH--TTEEEEEE
T ss_pred --------cchhhhhhhhCCCceeeEEEEe-ccCCccce---eeeEEEECCccchHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 00000 000000001111111 12111111 11111 10 1234444455555555678899
Q ss_pred cCC-CChhHHHhh--------------------Chh--HHHHHHHcCC-CCCCC-------------------Ceeeee-
Q 006387 395 ISH-KPTEKILSH--------------------FPN--IAAECLKYGL-DITSQ-------------------PIPVVP- 430 (647)
Q Consensus 395 ~~~-~~~~~l~~~--------------------~~~--~~~~~~~~G~-d~~~~-------------------~i~v~p- 430 (647)
+-. .+.+++.+. +|. ...+++..++ ++.+. ++++..
T Consensus 268 ~~p~~~~e~l~~~l~~~~~~~~~~~~~~~l~~~lp~rl~~~ll~~~~i~~~~~~~~~l~~~~~~~L~~~lk~~~~~v~g~ 347 (409)
T PF03486_consen 268 FLPDLSEEELEELLQERKEKNPKRTLKNFLKGLLPKRLALALLKRAGIKDPDKKVSELSKKERNRLANLLKRFPFTVTGT 347 (409)
T ss_dssp SSTTS-HHHHHHHHHHHHHHTTTSBHHHHHTTTS-HHHHHHHHHHTTS-STTSBGGGS-HHHHHHHHHHHHCEEEEESEE
T ss_pred eCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHcCCCccccchhhcCHHHHHHHHHHHHhCceeeccc
Confidence 864 443443221 111 1234566788 66421 233332
Q ss_pred ----eeceecCceEE---CCC-CC-cccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHH
Q 006387 431 ----AAHYMCGGVRA---GLQ-GE-TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQ 486 (647)
Q Consensus 431 ----~~~~~~GGi~v---D~~-~~-T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~ 486 (647)
.+..|.|||.+ |.+ ++ ..+||||+|||+. .++| .+||..|.+|+.+|++||+
T Consensus 348 ~~~~~A~VT~GGV~~~eid~~TmeSk~~~gLyf~GEvL--DvdG--~~GGYNLq~AwsSG~~Ag~ 408 (409)
T PF03486_consen 348 GGFDKAQVTAGGVDLKEIDPKTMESKLVPGLYFAGEVL--DVDG--PCGGYNLQWAWSSGYLAGK 408 (409)
T ss_dssp --TTT-SEEEEEE-GGGB-TTT-BBSSSTTEEE-GGGB--SEEE---TTTHHHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCcCHHHCCHhhhcccCCCCeEEEEEEE--Eecc--CcCchhHhHHHHHHHHhhC
Confidence 25678999984 554 33 4699999999997 6766 4789999999999999986
No 57
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=99.92 E-value=1.8e-23 Score=203.80 Aligned_cols=259 Identities=22% Similarity=0.236 Sum_probs=174.9
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecC--CCCCCccccCCCeeeecCC-------CCCHHHHHHHHHHhcc
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE--PHESNTNYAQGGVSAVLCP-------SDSVESHMQDTIVAGA 155 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~--~~~G~t~~a~Ggi~~~~~~-------~d~~~~~~~~~~~~g~ 155 (647)
...+||||||+|.|||.||.+++++| +|+|+|+.. ..+|...|+-||...+.++ .|+.+...+|++....
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAfWSfGGLF~vdSPEQRRlgirDsldLArqDW~gtA~ 82 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAFWSFGGLFLVDSPEQRRLGIRDSLDLARQDWFGTAA 82 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccceeeeecccEEEecCHHHhhcccchhHHHHHHhhhcccc
Confidence 34689999999999999999999999 999999864 4688999999998766543 4566666666665433
Q ss_pred cC-----CCHHHHHHHHHHh-HHHHHHHHHcCCCcccC----CCCCccccccCCccccceeeccCCchHHHHHHHHHHHH
Q 006387 156 YL-----CDDETVRVVCTEG-PDRIRELIAIGASFDRG----EDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVV 225 (647)
Q Consensus 156 ~~-----~~~~~~~~~~~~~-~~~i~~l~~~Gv~~~~~----~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~ 225 (647)
+- ....+.+.+.+.+ .+.-.||.+.|+.+... +.|.. ....-|.+.||.. ..-.+|..++..+.++++
T Consensus 83 FDRPEDhWPr~WAeAYl~FAAGEkR~WL~~~GmrwFPvVGWAERGG~-~A~ghGNSVPRFH-iTWGTGPgvl~pFvr~~r 160 (552)
T COG3573 83 FDRPEDHWPRQWAEAYLDFAAGEKRSWLHRRGMRWFPVVGWAERGGS-DAQGHGNSVPRFH-ITWGTGPGVLEPFVRRLR 160 (552)
T ss_pred cCCccccchHHHHHHHHhhhccchhHHHHHcCCeeeeeccchhhCCc-ccCCCCCCCcceE-EeecCCcchhhHHHHHHH
Confidence 22 1223444444433 46678999999886531 11111 1122345666643 333355555555555544
Q ss_pred c---CCCcEEEcceEEEEEEecCCCCCCeEEEEEEEec-----C---------CCeEEEEEcCeEEECCCccccc-----
Q 006387 226 S---DPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNV-----E---------TQEVVRFISKVTLLASGGAGHI----- 283 (647)
Q Consensus 226 ~---~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~-----~---------~g~~~~i~Ak~VVlAtGg~~~~----- 283 (647)
+ ..-|++...++|..|... ++ +|+||...-. . .|. +.|+|.+||+++||.++.
T Consensus 161 e~~~~~~v~f~~RHrV~~l~~t-~g---rvtGv~GdVLeps~v~RG~~SSR~~~Gd-Fef~A~aviv~SGGIGGnhelVR 235 (552)
T COG3573 161 EAQRRGRVTFRFRHRVDGLTTT-GG---RVTGVRGDVLEPSDVERGQPSSREVVGD-FEFSASAVIVASGGIGGNHELVR 235 (552)
T ss_pred HHHhCCceEEEeeeeccceEee-CC---eEeeecccccCCCccccCCCccceeecc-eEEeeeeEEEecCCcCCCHHHHH
Confidence 3 467999999999999987 55 8888865211 1 233 579999999999999873
Q ss_pred --CC-----------CCCCCCCCcchHHHHHHHcCCeecCccccccccccccCCCCCCCCCCCCCccceeeecccCCCce
Q 006387 284 --YP-----------STTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGI 350 (647)
Q Consensus 284 --~~-----------~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~ 350 (647)
|| .+.-|.-..|-.+.++..+|+.++|.+-+..+-..+.+. .|++|.+ .+. .+.|+...
T Consensus 236 rnWP~eRlG~~Pe~m~~GVPaHVDGrmi~i~~~aGg~vIN~DRMWHYtEGirNw-dPiWp~H----gIR---IlPGPSSl 307 (552)
T COG3573 236 RNWPTERLGRAPEQMLSGVPAHVDGRMIGIAVAAGGSVINPDRMWHYTEGIRNW-DPIWPNH----GIR---ILPGPSSL 307 (552)
T ss_pred hcCchhhcCCChHHHhcCCcccccchhHHHHHHhCCceeccccceehhhccccC-CCcCccc----cee---eccCCcce
Confidence 44 233455578888999999999999988766554455443 3556543 222 24567778
Q ss_pred EEeCCCCcc
Q 006387 351 LYNLGMERF 359 (647)
Q Consensus 351 ~vn~~G~rf 359 (647)
+++..|+|.
T Consensus 308 WlDa~G~RL 316 (552)
T COG3573 308 WLDAAGKRL 316 (552)
T ss_pred eECCCCCcC
Confidence 899999885
No 58
>PF02910 Succ_DH_flav_C: Fumarate reductase flavoprotein C-term; InterPro: IPR004112 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AEF_A 3AE9_A 3AE5_A 3AEA_A 3SFD_A 3AE7_A 3AEB_A 3AE8_A 1ZP0_A 3AE6_A ....
Probab=99.91 E-value=1e-24 Score=194.59 Aligned_cols=99 Identities=40% Similarity=0.657 Sum_probs=85.3
Q ss_pred HHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhhc-cCcccccchHHHHHHHhHHHHHHHHHHHHHhcCcCccc
Q 006387 530 RKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFE-HGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGL 608 (647)
Q Consensus 530 ~~~l~~~m~~~~g~~r~~~~l~~al~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~ 608 (647)
+++||++||+|+||+|++++|++|+++|++|++++..+.+. .....++++.+++|++||+++|++|+.|||.|+||||+
T Consensus 1 r~~Lq~~M~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~el~n~l~~a~~i~~aAl~R~ESRG~ 80 (129)
T PF02910_consen 1 REELQEIMWEYAGIVRNEEGLEEALEKLEELREELKNIKVPDKGRRFNHELMEALELRNMLLVAELIAKAALARKESRGA 80 (129)
T ss_dssp HHHHHHHHHHHSSSSBEHHHHHHHHHHHHHHHHHHTTBE-SCHCSTTBHHHHHHHHHHHHHHHHHHHHHHHHHS-SEBTT
T ss_pred CHHHHHHHHhCCCEEEcHHHHHHHHHHHHHHHHHHhcCeecCcccccchhHHHHHHHHhHHHHHHHHHHHHHhcccCccc
Confidence 47899999999999999999999999999999988543321 22345788899999999999999999999999999999
Q ss_pred ccccCCCCCccCCCCCeeec
Q 006387 609 HYMVDFPHVEENKRLPTIIL 628 (647)
Q Consensus 609 h~R~D~P~~d~~~~~~~~~~ 628 (647)
|||.|||++||++|.+++++
T Consensus 81 H~R~D~P~~~d~~~~~~~~~ 100 (129)
T PF02910_consen 81 HYREDYPERDDENWLKHIIV 100 (129)
T ss_dssp BEBTTSSSCETTTCSEEEEE
T ss_pred chhccccccccccccEEEEE
Confidence 99999999988877776654
No 59
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.89 E-value=3.8e-21 Score=206.45 Aligned_cols=339 Identities=21% Similarity=0.259 Sum_probs=202.7
Q ss_pred EEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHHHHHHH--
Q 006387 92 SVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCT-- 168 (647)
Q Consensus 92 lVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~-- 168 (647)
+|||||+||++||+.|++.| +|+|+||.+..++....+++|.+...+..+ .+.+.... ..++..++....
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~-~~~~~~~~------~~~~~~~~~~l~~~ 73 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCP-TPEFVAYY------PRNGKFLRSALSRF 73 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCc-chhHHHhc------CCCcHHHHHHHHhC
Confidence 69999999999999999999 999999998877666666667766544332 22222211 112232222222
Q ss_pred HhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCC
Q 006387 169 EGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGP 248 (647)
Q Consensus 169 ~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~ 248 (647)
...+.++|+.++|+++....+|.+. +.......+...|.+.+++ .|++++.++.|+++..+ ++
T Consensus 74 ~~~d~~~~~~~~Gv~~~~~~~g~~~--------------p~~~~a~~v~~~L~~~l~~-~gv~i~~~~~V~~i~~~-~~- 136 (400)
T TIGR00275 74 SNKDLIDFFESLGLELKVEEDGRVF--------------PCSDSAADVLDALLNELKE-LGVEILTNSKVKSIKKD-DN- 136 (400)
T ss_pred CHHHHHHHHHHcCCeeEEecCCEeE--------------CCCCCHHHHHHHHHHHHHH-CCCEEEeCCEEEEEEec-CC-
Confidence 2456788999999988754444321 1223456788899998887 49999999999999764 33
Q ss_pred CCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchHHHHHHHcCCeecCccccccccccccCCCCCC
Q 006387 249 DAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPI 328 (647)
Q Consensus 249 ~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g~~~ 328 (647)
...+.. . ++ .+.|+.||+|||+++ ||.+ .++|+|+.++.++|+.+.. .+|..+.-.-.
T Consensus 137 ---~~~v~~---~-~~--~i~ad~VIlAtG~~s--~p~~----gs~G~g~~la~~lG~~i~~-----~~P~l~~l~~~-- 194 (400)
T TIGR00275 137 ---GFGVET---S-GG--EYEADKVILATGGLS--YPQL----GSTGDGYEIAESLGHTIVP-----PVPALVPLTLD-- 194 (400)
T ss_pred ---eEEEEE---C-Cc--EEEcCEEEECCCCcc--cCCC----CCCcHHHHHHHHCCCCEec-----ccceEeEEEeC--
Confidence 233332 2 32 589999999999987 5543 5899999999999998764 34433221000
Q ss_pred CCCCCCCccceeeecccCCCceEEeCCCCcccccccc-----ccccCch-hHHHHHHHHHHHhcCCCeEEEecCC-CChh
Q 006387 329 KPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDE-----RAELAPR-DVVARSIDDQLKKRNEKYVLLDISH-KPTE 401 (647)
Q Consensus 329 ~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~-----~~~l~~r-d~~~~~i~~~~~~~~~~~v~ld~~~-~~~~ 401 (647)
.| .+.....++-...+.+..+|++|.++..+ .+-..|. -.+++.+...+..+....+.+|+-. .+.+
T Consensus 195 ~~------~~~~l~Gv~~~~~~~~~~~~~~~~~~~g~llft~~gisG~~vl~~s~~~~~~~~~~~~~~~~id~~p~~~~~ 268 (400)
T TIGR00275 195 ES------FLKELSGISLDGVVLSLVNGKKVLEEFGDLLFTHFGLSGPAILDLSAFAARALLKHKGVELEIDLLPDLSEE 268 (400)
T ss_pred Cc------ccccCCCCcCccEEEEecCCcEEEeecccEEEECCCcCHHHHHHHHHHHHHHhhcCCCcEEEEEcCCCCCHH
Confidence 00 00000111111222233445555432111 0000111 0133333333332333568889864 3444
Q ss_pred HHHhh--------------------Chh--HHHHHHHcCCCCCCC-------------------Ceeeee-----eecee
Q 006387 402 KILSH--------------------FPN--IAAECLKYGLDITSQ-------------------PIPVVP-----AAHYM 435 (647)
Q Consensus 402 ~l~~~--------------------~~~--~~~~~~~~G~d~~~~-------------------~i~v~p-----~~~~~ 435 (647)
++... +|. +..+++..|+++++. ++++.. .+..|
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~g~~~~~~a~vt 348 (400)
T TIGR00275 269 ELEQRLKRLRKSNPKKTVKNILKGLLPKRLAELLLEQLGIDPDLPAAQLSKKEIKKLVQLLKNWPFTVSGTRGFKEAEVT 348 (400)
T ss_pred HHHHHHHHHHHHChhhhHHHHhhhhhhHHHHHHHHHHcCCCCCCChHHCCHHHHHHHHHHHhCCEEEecCcCccceeEEe
Confidence 43221 111 123345668875431 233332 35678
Q ss_pred cCceEE---CCC-CC-cccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHH
Q 006387 436 CGGVRA---GLQ-GE-TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQ 486 (647)
Q Consensus 436 ~GGi~v---D~~-~~-T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~ 486 (647)
.|||.+ |.+ ++ .-+||||+|||+. .+.| .+||..|.+|+.+|+.||+
T Consensus 349 ~GGv~~~ei~~~~m~~k~~~gly~~GE~l--Dv~g--~~GGyNlq~a~~sg~~ag~ 400 (400)
T TIGR00275 349 AGGVSLKEINPKTMESKLVPGLYFAGEVL--DVDG--DTGGYNLQWAWSSGYLAGK 400 (400)
T ss_pred cCcccchhcChhhhhhcCCCCeEEEEEEE--ecCC--CCCchHHHHHHHHHHHhcC
Confidence 999985 443 33 4699999999997 6665 4789999999999999973
No 60
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.81 E-value=2.2e-19 Score=192.23 Aligned_cols=309 Identities=19% Similarity=0.240 Sum_probs=167.1
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHHH
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR 164 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~ 164 (647)
+.+||++|||+|+||..||+.|++.| +|+|+|+... -|.++.+.|.| |....
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~-lGGtCln~GCI--------------------------PsK~L 54 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGER-LGGTCLNVGCI--------------------------PSKAL 54 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCC-cCceEEeeCcc--------------------------ccHHH
Confidence 35799999999999999999999999 9999999863 35555655543 43333
Q ss_pred HHHHHhHHHHHHHH-HcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEe
Q 006387 165 VVCTEGPDRIRELI-AIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLT 243 (647)
Q Consensus 165 ~~~~~~~~~i~~l~-~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~ 243 (647)
....+....+.... .+|+..... .+. +..+....+.....+.. -.+.+.+..||+++.++- -..
T Consensus 55 l~~a~~~~~~~~~~~~~Gi~~~~~---~id--------~~~~~~~k~~v~~~~~~-~~~~l~~~~~V~vi~G~a---~f~ 119 (454)
T COG1249 55 LHAAEVIEEARHAAKEYGISAEVP---KID--------FEKLLARKDKVVRLLTG-GVEGLLKKNGVDVIRGEA---RFV 119 (454)
T ss_pred HHHHHHHHHHhhcccccceecCCC---CcC--------HHHHHHHHHHHHHHHhh-hHHHHHhhCCCEEEEEEE---EEC
Confidence 33333322233322 355554421 111 00000000101111112 222333445999998852 222
Q ss_pred cCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCC--CCCCCCCcchHHHHHHH-------cCCeecCcccc
Q 006387 244 TLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPS--TTNPLVATGDGMAMAHR-------AQAVISNMEFV 314 (647)
Q Consensus 244 ~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~--~~~~~~~tGdg~~~a~~-------aGa~l~~~e~~ 314 (647)
+ +. . |.+.. . +..+++|+.+|+|||+.+...+. ..+....+.++.....+ +|+.++++||.
T Consensus 120 ~-~~---~---v~V~~-~--~~~~~~a~~iiIATGS~p~~~~~~~~~~~~~~~s~~~l~~~~lP~~lvIiGgG~IGlE~a 189 (454)
T COG1249 120 D-PH---T---VEVTG-E--DKETITADNIIIATGSRPRIPPGPGIDGARILDSSDALFLLELPKSLVIVGGGYIGLEFA 189 (454)
T ss_pred C-CC---E---EEEcC-C--CceEEEeCEEEEcCCCCCcCCCCCCCCCCeEEechhhcccccCCCEEEEECCCHHHHHHH
Confidence 2 22 2 23322 1 33479999999999998876552 22332344455443334 68889999998
Q ss_pred ccccccccCCCCCCCCCCCCCccceeeecccCCCceEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCCeEEEe
Q 006387 315 QFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLD 394 (647)
Q Consensus 315 q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~l~~rd~~~~~i~~~~~~~~~~~v~ld 394 (647)
+++-. +.++ +.+-..+.++++.++++ +++.+.+.+.+++ ..++.+
T Consensus 190 ~~~~~-------------------LG~~-------VTiie~~~~iLp~~D~e--------i~~~~~~~l~~~g-v~i~~~ 234 (454)
T COG1249 190 SVFAA-------------------LGSK-------VTVVERGDRILPGEDPE--------ISKELTKQLEKGG-VKILLN 234 (454)
T ss_pred HHHHH-------------------cCCc-------EEEEecCCCCCCcCCHH--------HHHHHHHHHHhCC-eEEEcc
Confidence 86521 1111 45556777888766553 5666666666532 112211
Q ss_pred cCCC----ChhHHHhh-------ChhHHHHHHHcCCCCCCCCeeee--eeeceecCceEECCCCCcccCceeecccccCC
Q 006387 395 ISHK----PTEKILSH-------FPNIAAECLKYGLDITSQPIPVV--PAAHYMCGGVRAGLQGETNVRGLYVAGEVACT 461 (647)
Q Consensus 395 ~~~~----~~~~l~~~-------~~~~~~~~~~~G~d~~~~~i~v~--p~~~~~~GGi~vD~~~~T~ipGLyAaGe~a~~ 461 (647)
.... ..+.+.-. .-..+.++...|..|+.+.+-+. .-.....|+|.||..++|++||+||+|||+ +
T Consensus 235 ~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~IyA~GDV~-~ 313 (454)
T COG1249 235 TKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAIGDVI-G 313 (454)
T ss_pred ceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCccccCCCCEEEeeccC-C
Confidence 1100 00000000 00012223344555554432111 111223489999977788899999999997 3
Q ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHH
Q 006387 462 GLHGANRLASNSLLEALVFARRAVQPSID 490 (647)
Q Consensus 462 g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~ 490 (647)
+.. |+.. |.-.|++|+++++.
T Consensus 314 ~~~----Lah~----A~~eg~iaa~~i~g 334 (454)
T COG1249 314 GPM----LAHV----AMAEGRIAAENIAG 334 (454)
T ss_pred Ccc----cHhH----HHHHHHHHHHHHhC
Confidence 331 4443 44558888888875
No 61
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=99.71 E-value=5.6e-15 Score=154.64 Aligned_cols=323 Identities=15% Similarity=0.103 Sum_probs=187.3
Q ss_pred CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHHHHHHHH--hHHHHHHHHHcCCCcccCCC
Q 006387 112 TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCTE--GPDRIRELIAIGASFDRGED 189 (647)
Q Consensus 112 ~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~i~~l~~~Gv~~~~~~~ 189 (647)
+|+|+||....+-.-..++||-|.+.+.... ..++.. +..+++.++..... ..+.++|+.++|+++...++
T Consensus 3 ~V~ilEkn~~~GkKil~TG~GRCN~TN~~~~-~~~~~~------~~~~~~fl~~al~~f~~~d~~~fF~~~Gi~~~~e~~ 75 (376)
T TIGR03862 3 EVDVFEAKPSVGRKFLMAGKSGLNLTHSEPL-PRFIER------YGDAAEWLAPWLEAFDAVALQDWARGLGIETFVGSS 75 (376)
T ss_pred eEEEEeCCCCccceeEEcCCCCcccCCCCch-HHHHHh------cCCchHHHHHHHHhCCHHHHHHHHHHCCCceEECCC
Confidence 7999999998877666777888877663322 222211 22344544443332 24678999999999887777
Q ss_pred CCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEE
Q 006387 190 GNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFI 269 (647)
Q Consensus 190 g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~ 269 (647)
|+++ +.......++.+|...+++ .||+|+.++.|+++ + ++ . .++.. .++. ..++
T Consensus 76 grvf--------------P~S~~A~sVv~~L~~~l~~-~gV~i~~~~~V~~i--~-~~---~-~~v~~---~~~~-~~~~ 129 (376)
T TIGR03862 76 GRVF--------------PVEMKAAPLLRAWLKRLAE-QGVQFHTRHRWIGW--Q-GG---T-LRFET---PDGQ-STIE 129 (376)
T ss_pred CEEC--------------CCCCCHHHHHHHHHHHHHH-CCCEEEeCCEEEEE--e-CC---c-EEEEE---CCCc-eEEe
Confidence 7554 3344677899999999988 59999999999998 2 22 2 23332 2222 2589
Q ss_pred cCeEEECCCcccccCCCCCCCCCCcchHHHHHHHcCCeecCccccccccccccCCCCCCCCCCCCCccce-eeecccCCC
Q 006387 270 SKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFL-ITEAVRGDG 348 (647)
Q Consensus 270 Ak~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l-~~e~~~~~g 348 (647)
|++||+||||.+ ||.+ +++|+|+.+|.+.|..++.. .|..+.-.-. .+. .+. ....++-..
T Consensus 130 a~~vIlAtGG~s--~p~~----Gs~g~gy~la~~lGh~i~~~-----~PaL~pl~~~--~~~-----~~~~~L~Gv~~~~ 191 (376)
T TIGR03862 130 ADAVVLALGGAS--WSQL----GSDGAWQQVLDQRGVSVAPF-----APANCGFLVD--WSA-----HFASRFAGEPLKR 191 (376)
T ss_pred cCEEEEcCCCcc--cccc----CCCcHHHHHHHHCCCcccCC-----cCeeceEEcc--Cch-----hhHhhcCCCcccc
Confidence 999999999988 7765 37899999999999887653 3432210000 000 000 000011111
Q ss_pred ceE-EeC---CCCccccccccccccCch-hHHHHHHHHHHHhcCCCeEEEecCC-CChhHHHhhC----h--hHHHHHH-
Q 006387 349 GIL-YNL---GMERFMPLYDERAELAPR-DVVARSIDDQLKKRNEKYVLLDISH-KPTEKILSHF----P--NIAAECL- 415 (647)
Q Consensus 349 ~~~-vn~---~G~rf~~~~~~~~~l~~r-d~~~~~i~~~~~~~~~~~v~ld~~~-~~~~~l~~~~----~--~~~~~~~- 415 (647)
..+ ++. .|+-....|. -..|- =-+++.+...+.......+.+|+-. .+.+++.+.+ + .+...+.
T Consensus 192 ~~~~~~~~~~~GellFTh~G---iSGpavl~lS~~~~~~~~~~~~~~i~idf~P~~~~~~l~~~l~~~~~~k~l~~~L~~ 268 (376)
T TIGR03862 192 VNATAGTQQTRGEIVITARG---LEGGLIYALSAALREQIKAGGSANLFLDLLPDLSLEQVTKRLAAPRGKQSLSNHLRK 268 (376)
T ss_pred eEEEeCCeeEeeeEEEECCC---ccHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHhhcccchHHHHHHH
Confidence 111 110 1111111110 00010 0134444333333333448888863 3444443211 1 1111111
Q ss_pred HcCCCC-------------------------CCCCeeeee-----eeceecCceE---ECCCCCc-ccCceeecccccCC
Q 006387 416 KYGLDI-------------------------TSQPIPVVP-----AAHYMCGGVR---AGLQGET-NVRGLYVAGEVACT 461 (647)
Q Consensus 416 ~~G~d~-------------------------~~~~i~v~p-----~~~~~~GGi~---vD~~~~T-~ipGLyAaGe~a~~ 461 (647)
..|+++ ..-++++.. .+..|.|||. ||.+++. -+||||+|||+.
T Consensus 269 ~~gi~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~v~g~~~~~~A~VT~GGV~~~EI~~~~~Sk~~pgLYf~GEvL-- 346 (376)
T TIGR03862 269 ALGLDGVKRALLREVFPKAAWSQPETLAQTIKALPLPLDGTRPIDEAISTAGGVRQDALDESLMLKARPGVFCAGEML-- 346 (376)
T ss_pred HhCCCHHHHHHHHHHhhccCHHHHHHHHHHHhCCeeeecccCCcceEEEeCCcccHHHcChhhhcccCCCeEEEEEEE--
Confidence 112221 011233332 3567899997 5656553 599999999997
Q ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHHhh
Q 006387 462 GLHGANRLASNSLLEALVFARRAVQPSIDHK 492 (647)
Q Consensus 462 g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~ 492 (647)
.+.| .+||..|.+|+.+|++||++++.|+
T Consensus 347 DvdG--~~GGYNLq~AwsSG~~AG~~~~~~~ 375 (376)
T TIGR03862 347 DWEA--PTGGYLLTACFATGRAAGRGVHSWL 375 (376)
T ss_pred eecc--CCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 6666 4789999999999999999998765
No 62
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.69 E-value=1.5e-16 Score=173.85 Aligned_cols=42 Identities=29% Similarity=0.502 Sum_probs=35.3
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCC
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQG 131 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~G 131 (647)
+|||+|||||+||+.||+.|++.| +|+|+||... |+++.+.|
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~--GG~c~~~g 44 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKKL--GGTCVNVG 44 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccccc--ccceeccC
Confidence 599999999999999999999999 9999999643 44444444
No 63
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.69 E-value=3e-16 Score=171.55 Aligned_cols=142 Identities=18% Similarity=0.271 Sum_probs=79.2
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHHHHH
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVV 166 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~ 166 (647)
+|||+||||||||+.||+.|++.| +|+|+|+.. . |+++.+.| |-|......
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~-~-GG~c~~~g--------------------------ciPsk~l~~ 53 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPR-V-GGTCVIRG--------------------------CVPKKLMVY 53 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCc-c-CceeecCC--------------------------cCchHHHHH
Confidence 699999999999999999999999 999999954 3 33444444 334443333
Q ss_pred HHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCC
Q 006387 167 CTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLD 246 (647)
Q Consensus 167 ~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~ 246 (647)
..+....++....+|+..... .+. +.......+..-..+...+.+.+.+ .||+++.+ ++..+. .+
T Consensus 54 ~a~~~~~~~~~~~~g~~~~~~---~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~-~gV~~~~g-~~~~v~--~~ 118 (446)
T TIGR01424 54 GSTFGGEFEDAAGYGWTVGKA---RFD--------WKKLLQKKDDEIARLSGLYKRLLAN-AGVELLEG-RARLVG--PN 118 (446)
T ss_pred HHHHHHHHhhhHhcCcCCCCC---CcC--------HHHHHHHHHHHHHHHHHHHHHHHHh-CCcEEEEE-EEEEec--CC
Confidence 333333344444555543210 000 0000000000011233344444555 59999877 444432 11
Q ss_pred CCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006387 247 GPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 247 g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 283 (647)
.+ .+. .+|+ .+.++.||||||+....
T Consensus 119 ----~v---~v~--~~g~--~~~~d~lIiATGs~p~~ 144 (446)
T TIGR01424 119 ----TV---EVL--QDGT--TYTAKKILIAVGGRPQK 144 (446)
T ss_pred ----EE---EEe--cCCe--EEEcCEEEEecCCcCCC
Confidence 12 222 2343 58999999999987643
No 64
>PLN02546 glutathione reductase
Probab=99.69 E-value=2.4e-16 Score=174.74 Aligned_cols=145 Identities=15% Similarity=0.218 Sum_probs=83.4
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecC--------CCCCCccccCCCeeeecCCCCCHHHHHHHHHHhccc
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE--------PHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAY 156 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~--------~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~ 156 (647)
..+|||+|||+|++|+.||+.|++.| +|+|+|+.. -.-|+++.+.|
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~G------------------------- 131 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRG------------------------- 131 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcc-------------------------
Confidence 45799999999999999999999999 999999621 11133444433
Q ss_pred CCCHHHHHHHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcce
Q 006387 157 LCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHH 236 (647)
Q Consensus 157 ~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~ 236 (647)
|.|........+....++....+|+.+..... +. +..+....+..-..+...+.+.+.+ .||+++.+.
T Consensus 132 -CiPsK~l~~aa~~~~~~~~~~~~g~~~~~~~~--~d--------~~~~~~~k~~~~~~l~~~~~~~l~~-~gV~~i~G~ 199 (558)
T PLN02546 132 -CVPKKLLVYASKYSHEFEESRGFGWKYETEPK--HD--------WNTLIANKNAELQRLTGIYKNILKN-AGVTLIEGR 199 (558)
T ss_pred -hHHHHHHHHHHHHHHHHHhhhhcCcccCCCCC--CC--------HHHHHHHHHHHHHHHHHHHHHHHHh-CCcEEEEeE
Confidence 56666555555555555555667765421111 11 1111000010111233334444544 589998763
Q ss_pred EEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006387 237 FAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 237 ~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 283 (647)
++.+ + .. .+ .+ +|+ .+.++.||||||+....
T Consensus 200 -a~~v--d-~~---~V---~v----~G~--~~~~D~LVIATGs~p~~ 230 (558)
T PLN02546 200 -GKIV--D-PH---TV---DV----DGK--LYTARNILIAVGGRPFI 230 (558)
T ss_pred -EEEc--c-CC---EE---EE----CCE--EEECCEEEEeCCCCCCC
Confidence 3322 2 11 22 22 244 58999999999987643
No 65
>PTZ00058 glutathione reductase; Provisional
Probab=99.68 E-value=2.3e-16 Score=174.75 Aligned_cols=46 Identities=30% Similarity=0.398 Sum_probs=38.7
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCe
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGV 133 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi 133 (647)
..+|||+|||||+||+.||+.|++.| +|+||||... |+++.+.|.+
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~~--GGtCln~GCi 92 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDYL--GGTCVNVGCV 92 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecccc--cccccccCCC
Confidence 46799999999999999999999999 9999999743 5555666644
No 66
>PLN02507 glutathione reductase
Probab=99.68 E-value=5.9e-16 Score=170.75 Aligned_cols=155 Identities=15% Similarity=0.182 Sum_probs=82.2
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecC--CCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHH
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE--PHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDET 162 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~--~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~ 162 (647)
..+|||+|||||+||+.||+.|++.| +|+|||+.. +..+. ...-||.|...+ |-|+.
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~-~~~~GGtc~n~G-------------------ciPsK 82 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSES-IGGVGGTCVIRG-------------------CVPKK 82 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccc-CCCccceeeccC-------------------chhHH
Confidence 45799999999999999999999999 999999721 11110 011234432211 44544
Q ss_pred HHHHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEE
Q 006387 163 VRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLL 242 (647)
Q Consensus 163 ~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~ 242 (647)
...........+....++|+...... .+. +.......+..-..+...+.+.+. ..||+++.+ .+..+
T Consensus 83 ~l~~~a~~~~~~~~~~~~G~~~~~~~--~id--------~~~~~~~~~~~~~~~~~~~~~~l~-~~gV~~i~g-~a~~v- 149 (499)
T PLN02507 83 ILVYGATFGGEFEDAKNYGWEINEKV--DFN--------WKKLLQKKTDEILRLNGIYKRLLA-NAGVKLYEG-EGKIV- 149 (499)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCCC--ccC--------HHHHHHHHHHHHHHHHHHHHHHHH-hCCcEEEEE-EEEEe-
Confidence 44444333344455566776542111 010 000000000000112222222333 358999887 34333
Q ss_pred ecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006387 243 TTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 243 ~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 282 (647)
+.+ . +.+. ..+|+...+.+|.||||||....
T Consensus 150 -d~~----~---v~V~-~~~g~~~~~~~d~LIIATGs~p~ 180 (499)
T PLN02507 150 -GPN----E---VEVT-QLDGTKLRYTAKHILIATGSRAQ 180 (499)
T ss_pred -cCC----E---EEEE-eCCCcEEEEEcCEEEEecCCCCC
Confidence 222 1 2222 23566567999999999998664
No 67
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.68 E-value=3.5e-16 Score=171.49 Aligned_cols=33 Identities=42% Similarity=0.523 Sum_probs=30.6
Q ss_pred cccCEEEECcchHHHHHHHHHHhc-C-CeEEEEec
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKH-G-TVAVITKA 119 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~-G-~V~llEk~ 119 (647)
.+|||+|||||++|+.||+.|++. | +|+|||+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 369999999999999999999997 8 99999984
No 68
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.65 E-value=1e-15 Score=168.10 Aligned_cols=44 Identities=20% Similarity=0.276 Sum_probs=36.4
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCC
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQG 131 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~G 131 (647)
.+|||+|||||+||+.||..|++.| +|+|||+.+..| +++.+.|
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~G-G~c~n~g 47 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLG-GVCLNVG 47 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccc-ccccCCC
Confidence 4699999999999999999999999 999999975443 3444444
No 69
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.65 E-value=1.6e-15 Score=166.79 Aligned_cols=156 Identities=16% Similarity=0.187 Sum_probs=81.7
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHHHHH
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVV 166 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~ 166 (647)
+|||||||+|+||+.||+.|++.| +|+|||+.......+.+..||.|...+ |-|......
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~G-------------------CiPsK~l~~ 62 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVG-------------------CIPKKLMHQ 62 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccC-------------------cCchhHHHH
Confidence 589999999999999999999999 999999854322222223455543322 444443332
Q ss_pred HHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCC
Q 006387 167 CTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLD 246 (647)
Q Consensus 167 ~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~ 246 (647)
..+..........+|+.+..... +. +.......+..-..+.......+.+ .||+++.+.- -..+ .
T Consensus 63 ~a~~~~~~~~~~~~g~~~~~~~~--~d--------~~~~~~~~~~~v~~~~~~~~~~~~~-~~v~~i~G~a---~f~~-~ 127 (484)
T TIGR01438 63 AALLGQALKDSRNYGWNVEETVK--HD--------WNRLSEAVQNHIGSLNWGYRVALRE-KKVNYENAYA---EFVD-K 127 (484)
T ss_pred HHHHHHHHhhhhhcCcccCCCcc--cC--------HHHHHHHHHHHHHHHHHHHHHHHhh-CCcEEEEEEE---EEcC-C
Confidence 22222222333445655432100 00 0000000000011122222333444 5999998743 2223 2
Q ss_pred CCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccC
Q 006387 247 GPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIY 284 (647)
Q Consensus 247 g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~ 284 (647)
. . +.+.+ .+|+...+.++.||||||+.....
T Consensus 128 ~---~---v~v~~-~~g~~~~~~~d~lVIATGs~p~~p 158 (484)
T TIGR01438 128 H---R---IKATN-KKGKEKIYSAERFLIATGERPRYP 158 (484)
T ss_pred C---E---EEEec-cCCCceEEEeCEEEEecCCCCCCC
Confidence 2 2 23322 234445699999999999876443
No 70
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.65 E-value=1.6e-15 Score=179.86 Aligned_cols=89 Identities=21% Similarity=0.255 Sum_probs=62.1
Q ss_pred cccccccccccccccccccccc--cccccccccCCCCchhhhhhhccccccccccCCCCccccCEEEECcchHHHHHHHH
Q 006387 29 LVSSLTFNGCIQRELSWSFGVS--RFLRFQRFNFSHSPVSENWKSLRTVPVLSCLRDGSVKYFDFSVIGSGVAGLCYALE 106 (647)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVlVIGgG~AGl~AA~~ 106 (647)
.++++.++|||||+||||...| .++.+++........+...... ........+||+|||||+|||+||+.
T Consensus 110 ~~~~~~~~~~~~~~~~~p~~~~~~~~e~~ir~~ag~g~~~~~~~p~--------~~~~~~~~~dVvIIGaGPAGLaAA~~ 181 (985)
T TIGR01372 110 LFAPLLSAGFYYKTFMWPAAFWWKIYEPFIRRAAGLGVADTETDPD--------TYDKVNAHCDVLVVGAGPAGLAAALA 181 (985)
T ss_pred hhhhcccccccccccCCcHHHHHHHhhHHhHHhccCCcCCCCCCCc--------cchhhcccCCEEEECCCHHHHHHHHH
Confidence 4588999999999999998766 3666665322221111110000 00011346899999999999999999
Q ss_pred HHhcC-CeEEEEecCCCCCC
Q 006387 107 VAKHG-TVAVITKAEPHESN 125 (647)
Q Consensus 107 aa~~G-~V~llEk~~~~~G~ 125 (647)
|++.| +|+|+|+.+..+|.
T Consensus 182 aar~G~~V~liD~~~~~GG~ 201 (985)
T TIGR01372 182 AARAGARVILVDEQPEAGGS 201 (985)
T ss_pred HHhCCCcEEEEecCCCCCCe
Confidence 99999 99999998776543
No 71
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.64 E-value=2.2e-15 Score=148.59 Aligned_cols=287 Identities=19% Similarity=0.267 Sum_probs=158.1
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHHH
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR 164 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~ 164 (647)
..+||.+|||||..|+++|..+++.| +|.|+|..... |.|+.+.| |-|..+.
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~l-GGTCVn~G--------------------------CVPKKvm 70 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGL-GGTCVNVG--------------------------CVPKKVM 70 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCc-CceEEeec--------------------------cccceeE
Confidence 45899999999999999999999999 99999986433 33333333 4455555
Q ss_pred HHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEec
Q 006387 165 VVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT 244 (647)
Q Consensus 165 ~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~ 244 (647)
.++....+.++...++|++.... +.+. |+-+....+. --.-+..+++...+..+|+++.+.- .+. +
T Consensus 71 ~~~a~~~~~~~da~~yG~~~~~~--~~fd--------W~~ik~krda-yi~RLngIY~~~L~k~~V~~i~G~a--~f~-~ 136 (478)
T KOG0405|consen 71 WYAADYSEEMEDAKDYGFPINEE--GSFD--------WKVIKQKRDA-YILRLNGIYKRNLAKAAVKLIEGRA--RFV-S 136 (478)
T ss_pred EehhhhhHHhhhhhhcCCccccc--cCCc--------HHHHHhhhhH-HHHHHHHHHHhhccccceeEEeeeE--EEc-C
Confidence 55555555566666777776432 2221 1111000010 0112345566655556898888752 222 2
Q ss_pred CCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchHHHHHHH-------cCCeecCccccccc
Q 006387 245 LDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHR-------AQAVISNMEFVQFH 317 (647)
Q Consensus 245 ~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~-------aGa~l~~~e~~q~~ 317 (647)
++ .| -|. ..+|....++|+.+++||||.+............+.||..-+.+ .||.++.+||...+
T Consensus 137 -~~---~v-~V~---~~d~~~~~Ytak~iLIAtGg~p~~PnIpG~E~gidSDgff~Lee~Pkr~vvvGaGYIavE~Agi~ 208 (478)
T KOG0405|consen 137 -PG---EV-EVE---VNDGTKIVYTAKHILIATGGRPIIPNIPGAELGIDSDGFFDLEEQPKRVVVVGAGYIAVEFAGIF 208 (478)
T ss_pred -CC---ce-EEE---ecCCeeEEEecceEEEEeCCccCCCCCCchhhccccccccchhhcCceEEEEccceEEEEhhhHH
Confidence 33 22 132 24566677999999999999875433333334567788776654 57888888876543
Q ss_pred cccccCCCCCCCCCCCCCccceeeecccCCCceEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCCeEEEecCC
Q 006387 318 PTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISH 397 (647)
Q Consensus 318 p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~l~~rd~~~~~i~~~~~~~~~~~v~ld~~~ 397 (647)
.. |.++ ..++- +.+.++..+++. ++..+.+.+...+ +-+.-..
T Consensus 209 ~g-------------------Lgse------thlfi-R~~kvLR~FD~~--------i~~~v~~~~~~~g---invh~~s 251 (478)
T KOG0405|consen 209 AG-------------------LGSE------THLFI-RQEKVLRGFDEM--------ISDLVTEHLEGRG---INVHKNS 251 (478)
T ss_pred hh-------------------cCCe------eEEEE-ecchhhcchhHH--------HHHHHHHHhhhcc---eeecccc
Confidence 11 0111 01111 223345444432 3344444444322 1111000
Q ss_pred CChhHHH-------------hhChhHHHHHHHcCCCCCCCCeeee--eeeceecCceEECCCCCcccCceeeccccc
Q 006387 398 KPTEKIL-------------SHFPNIAAECLKYGLDITSQPIPVV--PAAHYMCGGVRAGLQGETNVRGLYVAGEVA 459 (647)
Q Consensus 398 ~~~~~l~-------------~~~~~~~~~~~~~G~d~~~~~i~v~--p~~~~~~GGi~vD~~~~T~ipGLyAaGe~a 459 (647)
. ..++. ..++.++.++...|.+|....+.+. .-.....|-|.||++.+|+||++||+||++
T Consensus 252 ~-~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp~I~avGDv~ 327 (478)
T KOG0405|consen 252 S-VTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVPSIWAVGDVT 327 (478)
T ss_pred c-ceeeeecCCCceEEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccCCCCceEEecccc
Confidence 0 00000 0112223334445666554332221 112234688999999999999999999996
No 72
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.64 E-value=1.7e-15 Score=166.25 Aligned_cols=45 Identities=24% Similarity=0.384 Sum_probs=35.9
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCe
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGV 133 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi 133 (647)
+|||+|||+||||+.||+.|++.| +|+|||+....|| ++.+.|.+
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG-~c~~~gci 48 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGG-TCLNVGCM 48 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceee-eeccCccc
Confidence 599999999999999999999999 9999998544433 34444433
No 73
>PLN02661 Putative thiazole synthesis
Probab=99.63 E-value=9e-15 Score=149.97 Aligned_cols=144 Identities=22% Similarity=0.300 Sum_probs=99.2
Q ss_pred ccccCEEEECcchHHHHHHHHHHhc-C-CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHH
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKH-G-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETV 163 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~-G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~ 163 (647)
..++||+|||+|++|++||+.|++. | +|+||||....+|+.. ..|... +.-
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~-~gg~l~------------------------~~~-- 142 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAW-LGGQLF------------------------SAM-- 142 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccccee-eCcccc------------------------ccc--
Confidence 4579999999999999999999986 7 9999999877655332 111110 000
Q ss_pred HHHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEe
Q 006387 164 RVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLT 243 (647)
Q Consensus 164 ~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~ 243 (647)
.++. ...++|+++|++|++. ++ +.. .. ....+...|.+++.++.|+++++++.+++|+.
T Consensus 143 --vv~~--~a~e~LeElGV~fd~~-dg-y~v----------v~-----ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~ 201 (357)
T PLN02661 143 --VVRK--PAHLFLDELGVPYDEQ-EN-YVV----------IK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIV 201 (357)
T ss_pred --cccc--HHHHHHHHcCCCcccC-CC-eeE----------ec-----chHHHHHHHHHHHHhcCCCEEEeCeEeeeEEe
Confidence 0111 1245678899998653 22 211 10 22456678888887767999999999999998
Q ss_pred cCCCCCCeEEEEEEEe------cCC---CeEEEEEcCeEEECCCccc
Q 006387 244 TLDGPDAVCHGVDTLN------VET---QEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 244 ~~~g~~~~v~Gv~~~~------~~~---g~~~~i~Ak~VVlAtGg~~ 281 (647)
+ ++ +|.||++.. ..+ .+...|+||+||+|||+.+
T Consensus 202 ~-~g---rVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g 244 (357)
T PLN02661 202 K-GD---RVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDG 244 (357)
T ss_pred c-CC---EEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCC
Confidence 7 45 899998632 112 1345799999999999544
No 74
>PRK06116 glutathione reductase; Validated
Probab=99.63 E-value=2.1e-15 Score=165.25 Aligned_cols=34 Identities=38% Similarity=0.544 Sum_probs=31.8
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
.+|||+|||||+||+.||+.|++.| +|+|+|+..
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~ 37 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAKR 37 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 3699999999999999999999999 999999863
No 75
>PRK06370 mercuric reductase; Validated
Probab=99.60 E-value=1.7e-14 Score=158.56 Aligned_cols=36 Identities=36% Similarity=0.433 Sum_probs=32.9
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCC
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~ 121 (647)
+.+|||+|||||+||+.||+.|++.| +|+|+|+...
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~ 39 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLL 39 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCcc
Confidence 34699999999999999999999999 9999999754
No 76
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=6e-15 Score=150.78 Aligned_cols=114 Identities=19% Similarity=0.266 Sum_probs=74.1
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC-C-eEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHHH
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG-T-VAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR 164 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G-~-V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~ 164 (647)
..|||+|||||||||+||+++++.+ + ++|+|+.... |...... -+
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~g-g~~~~~~-~v------------------------------- 48 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPG-GQLTKTT-DV------------------------------- 48 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcC-Cccccce-ee-------------------------------
Confidence 3699999999999999999999999 8 6666765442 2111100 00
Q ss_pred HHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEec
Q 006387 165 VVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT 244 (647)
Q Consensus 165 ~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~ 244 (647)
.+++- +.....|..+...+.+++.. .++++.. ..|..+...
T Consensus 49 ---------------enypg----------------------~~~~~~g~~L~~~~~~~a~~-~~~~~~~-~~v~~v~~~ 89 (305)
T COG0492 49 ---------------ENYPG----------------------FPGGILGPELMEQMKEQAEK-FGVEIVE-DEVEKVELE 89 (305)
T ss_pred ---------------cCCCC----------------------CccCCchHHHHHHHHHHHhh-cCeEEEE-EEEEEEeec
Confidence 00000 01234577888888888886 6999888 566666543
Q ss_pred CCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006387 245 LDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 245 ~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 283 (647)
+ . .....+.+++ ++||.||+|||...+.
T Consensus 90 ~-----~---~F~v~t~~~~---~~ak~vIiAtG~~~~~ 117 (305)
T COG0492 90 G-----G---PFKVKTDKGT---YEAKAVIIATGAGARK 117 (305)
T ss_pred C-----c---eEEEEECCCe---EEEeEEEECcCCcccC
Confidence 1 1 1222334453 9999999999977644
No 77
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.58 E-value=2.7e-14 Score=157.11 Aligned_cols=34 Identities=35% Similarity=0.565 Sum_probs=32.2
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
.+|||+|||||+||+.||+.|++.| +|+|+||..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 4699999999999999999999999 999999976
No 78
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.58 E-value=1.8e-14 Score=158.74 Aligned_cols=31 Identities=42% Similarity=0.620 Sum_probs=30.2
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC-CeEEEEe
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITK 118 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk 118 (647)
+|||+|||||+||++||+.|++.| +|+|||+
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 699999999999999999999999 9999998
No 79
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.58 E-value=2.2e-14 Score=157.88 Aligned_cols=44 Identities=27% Similarity=0.407 Sum_probs=36.0
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCe
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGV 133 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi 133 (647)
+|||+|||||+||+.||+.|++.| +|+|||++.. |.++.+.|.+
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~~--GG~c~~~gci 48 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYW--GGVCLNVGCI 48 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC--CCceecCCcc
Confidence 599999999999999999999999 9999999644 3344444433
No 80
>PRK14694 putative mercuric reductase; Provisional
Probab=99.57 E-value=5.5e-14 Score=154.70 Aligned_cols=45 Identities=27% Similarity=0.392 Sum_probs=37.3
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCC
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGG 132 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Gg 132 (647)
..+|||+|||||+||+.||+.|++.| +|+|+|++.. |+++.+.|.
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~~--GGtc~n~Gc 49 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERGTI--GGTCVNIGC 49 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcccc--ccceecCCc
Confidence 45799999999999999999999999 9999999753 344455553
No 81
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.57 E-value=2.3e-14 Score=157.71 Aligned_cols=40 Identities=40% Similarity=0.490 Sum_probs=35.2
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCC
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESN 125 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~ 125 (647)
+..|||+|||||+||+.||+.|++.| +|+|+|+....||.
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~ 43 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGG 43 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccccc
Confidence 34699999999999999999999999 99999997655543
No 82
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.57 E-value=4.2e-14 Score=142.09 Aligned_cols=144 Identities=22% Similarity=0.252 Sum_probs=102.6
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHHH
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR 164 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~ 164 (647)
..++||+|||||+||++||+.|++.| +|+|+||....+|.. + .||.. .+...+
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~-~-~gg~~-----------------------~~~~~v- 76 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM-W-GGGML-----------------------FNKIVV- 76 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc-c-cCccc-----------------------cccccc-
Confidence 34699999999999999999999999 999999988765532 1 22221 000000
Q ss_pred HHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEec
Q 006387 165 VVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT 244 (647)
Q Consensus 165 ~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~ 244 (647)
..+..+++.++|+++....++.+. ..+..+...|.+.+.+ .|+++++++.|+++..+
T Consensus 77 -----~~~~~~~l~~~gv~~~~~~~g~~~-----------------vd~~~l~~~L~~~A~~-~Gv~I~~~t~V~dl~~~ 133 (257)
T PRK04176 77 -----QEEADEILDEFGIRYKEVEDGLYV-----------------ADSVEAAAKLAAAAID-AGAKIFNGVSVEDVILR 133 (257)
T ss_pred -----hHHHHHHHHHCCCCceeecCccee-----------------ccHHHHHHHHHHHHHH-cCCEEEcCceeceeeEe
Confidence 114467788899988653332110 1246788889999887 49999999999999886
Q ss_pred CCCCCCeEEEEEEEecC------CCeEEEEEcCeEEECCCccc
Q 006387 245 LDGPDAVCHGVDTLNVE------TQEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 245 ~~g~~~~v~Gv~~~~~~------~g~~~~i~Ak~VVlAtGg~~ 281 (647)
+++ +|.|+++.+.. ..+...|+||.||+|||+.+
T Consensus 134 ~~g---~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 134 EDP---RVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred CCC---cEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 554 78898875321 12345799999999999766
No 83
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.57 E-value=2.8e-14 Score=157.24 Aligned_cols=43 Identities=28% Similarity=0.514 Sum_probs=35.8
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCC
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQG 131 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~G 131 (647)
..|||+|||||+||+.||+.|++.| +|+|||+... |+++.+.|
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~--GG~c~~~g 46 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGKL--GGTCLHKG 46 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEccCC--CcceEcCC
Confidence 4699999999999999999999999 9999999643 44444444
No 84
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.57 E-value=1.7e-14 Score=157.72 Aligned_cols=45 Identities=31% Similarity=0.404 Sum_probs=36.8
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCC
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGG 132 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Gg 132 (647)
+|||+|||||+||+.||+.|++.| +|+|+|+.+...|.++.+.|.
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gc 48 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGC 48 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccc
Confidence 599999999999999999999999 999999976433444444443
No 85
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.55 E-value=6.1e-14 Score=154.03 Aligned_cols=149 Identities=15% Similarity=0.171 Sum_probs=80.1
Q ss_pred CEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHHHHHHH
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCT 168 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~ 168 (647)
||+|||+|++|+.||..|++.| +|+|+||... |.++.+.| |-|........
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~--gG~c~~~g--------------------------ciPsK~l~~~a 54 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDGL--GGAAVLTD--------------------------CVPSKTLIATA 54 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEccCC--CCcccccC--------------------------CcchHHHHHHH
Confidence 8999999999999999999999 9999999764 33333333 22333222222
Q ss_pred HhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEE--ecCC
Q 006387 169 EGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLL--TTLD 246 (647)
Q Consensus 169 ~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~--~~~~ 246 (647)
+....+.....+|+.........+. +.......+..-..+...+.+.+.+ .||+++.++- ..+. .+ .
T Consensus 55 ~~~~~~~~~~~~g~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~-~gV~~~~g~~-~~~~~~~~-~ 123 (466)
T PRK07845 55 EVRTELRRAAELGIRFIDDGEARVD--------LPAVNARVKALAAAQSADIRARLER-EGVRVIAGRG-RLIDPGLG-P 123 (466)
T ss_pred HHHHHHHHHHhCCcccccCcccccC--------HHHHHHHHHHHHHHHHHHHHHHHHH-CCCEEEEEEE-EEeecccC-C
Confidence 2233344455667653200000000 0000000000001122334455555 5999998853 3222 22 2
Q ss_pred CCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccC
Q 006387 247 GPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIY 284 (647)
Q Consensus 247 g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~ 284 (647)
. . +.+.. .+|+...+.++.||+|||+.....
T Consensus 124 ~---~---v~V~~-~~g~~~~~~~d~lViATGs~p~~~ 154 (466)
T PRK07845 124 H---R---VKVTT-ADGGEETLDADVVLIATGASPRIL 154 (466)
T ss_pred C---E---EEEEe-CCCceEEEecCEEEEcCCCCCCCC
Confidence 2 2 22222 345545689999999999876543
No 86
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.53 E-value=3e-14 Score=160.07 Aligned_cols=45 Identities=27% Similarity=0.462 Sum_probs=36.9
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCC
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQG 131 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~G 131 (647)
.+|||+|||+|++|..||+.|++.| +|+|||+....-|+++.+.|
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~G 160 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVG 160 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeC
Confidence 4799999999999999999999999 99999975322355555555
No 87
>PRK13748 putative mercuric reductase; Provisional
Probab=99.53 E-value=1.3e-13 Score=155.63 Aligned_cols=43 Identities=30% Similarity=0.459 Sum_probs=35.8
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCC
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQG 131 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~G 131 (647)
.+|||+|||||+||+.||+.|++.| +|+|||+.. . |+++.+.|
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~-~-GG~c~n~g 140 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGT-I-GGTCVNVG 140 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCc-c-eeeccccC
Confidence 3699999999999999999999999 999999973 3 33444444
No 88
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.52 E-value=2.1e-14 Score=159.46 Aligned_cols=114 Identities=24% Similarity=0.302 Sum_probs=75.6
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHHH
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR 164 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~ 164 (647)
...|||+|||||+||++||+.|++.| +|+|++.. .||...... ++.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~--~GG~~~~~~-~~~------------------------------ 256 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IGGQVKDTV-GIE------------------------------ 256 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCccccCc-Ccc------------------------------
Confidence 45699999999999999999999999 99999752 222110000 000
Q ss_pred HHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEec
Q 006387 165 VVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT 244 (647)
Q Consensus 165 ~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~ 244 (647)
.+ .+. ....+..+...+.+.+.+. |++++.+++|+++..+
T Consensus 257 -----------~~--~~~--------------------------~~~~~~~l~~~l~~~l~~~-gv~i~~~~~V~~I~~~ 296 (515)
T TIGR03140 257 -----------NL--ISV--------------------------PYTTGSQLAANLEEHIKQY-PIDLMENQRAKKIETE 296 (515)
T ss_pred -----------cc--ccc--------------------------CCCCHHHHHHHHHHHHHHh-CCeEEcCCEEEEEEec
Confidence 00 000 0113556777787888774 9999999999999765
Q ss_pred CCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006387 245 LDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 245 ~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 282 (647)
++. ..+.. .+|+ .+.++.+|+|||....
T Consensus 297 ~~~-----~~v~~---~~g~--~i~~d~lIlAtGa~~~ 324 (515)
T TIGR03140 297 DGL-----IVVTL---ESGE--VLKAKSVIVATGARWR 324 (515)
T ss_pred CCe-----EEEEE---CCCC--EEEeCEEEECCCCCcC
Confidence 322 12222 3454 5899999999998653
No 89
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.52 E-value=1.8e-13 Score=127.56 Aligned_cols=141 Identities=21% Similarity=0.239 Sum_probs=102.9
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHHH
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR 164 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~ 164 (647)
..+.||+|||+||+||+||++||++| ||+|+|+....||... .||+.. +.-.+
T Consensus 28 ~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w--~GGmlf-----------------------~~iVv- 81 (262)
T COG1635 28 YLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW--GGGMLF-----------------------NKIVV- 81 (262)
T ss_pred hhhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc--cccccc-----------------------ceeee-
Confidence 34689999999999999999999999 9999999988776553 233321 10000
Q ss_pred HHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEec
Q 006387 165 VVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT 244 (647)
Q Consensus 165 ~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~ 244 (647)
..++-+.|++.|+++...++|.+.. .+..+...|..++.+ .|++|++.+.|.+++..
T Consensus 82 -----~~~a~~iL~e~gI~ye~~e~g~~v~-----------------ds~e~~skl~~~a~~-aGaki~n~~~veDvi~r 138 (262)
T COG1635 82 -----REEADEILDEFGIRYEEEEDGYYVA-----------------DSAEFASKLAARALD-AGAKIFNGVSVEDVIVR 138 (262)
T ss_pred -----cchHHHHHHHhCCcceecCCceEEe-----------------cHHHHHHHHHHHHHh-cCceeeecceEEEEEEe
Confidence 0123456778999998877764321 245677888888887 48999999999999987
Q ss_pred CCCCCCeEEEEEEEecCC------CeEEEEEcCeEEECCC
Q 006387 245 LDGPDAVCHGVDTLNVET------QEVVRFISKVTLLASG 278 (647)
Q Consensus 245 ~~g~~~~v~Gv~~~~~~~------g~~~~i~Ak~VVlAtG 278 (647)
++. +|.|+++.-+.. =....++|+.||-|||
T Consensus 139 ~~~---rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTG 175 (262)
T COG1635 139 DDP---RVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATG 175 (262)
T ss_pred cCC---ceEEEEEecchhhhcccccCcceeeEEEEEeCCC
Confidence 553 799998743211 1235799999999999
No 90
>PRK14727 putative mercuric reductase; Provisional
Probab=99.52 E-value=7.2e-14 Score=154.04 Aligned_cols=45 Identities=29% Similarity=0.426 Sum_probs=37.0
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCC
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQG 131 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~G 131 (647)
...|||+|||+|+||+.+|+.|++.| +|+|+|+....|| ++.+.|
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG-~c~n~G 59 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGG-CCVNVG 59 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccee-Eecccc
Confidence 34699999999999999999999999 9999999755443 344444
No 91
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.52 E-value=2.2e-13 Score=149.98 Aligned_cols=42 Identities=36% Similarity=0.499 Sum_probs=34.4
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCC
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQG 131 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~G 131 (647)
.|||+|||||+||+.||+.|++.| +|+|||+ ...|| ++.+.|
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG-~~~~~g 43 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGG-TCLNVG 43 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCC-ceeecC
Confidence 389999999999999999999999 9999999 44444 333334
No 92
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.51 E-value=2.2e-13 Score=136.38 Aligned_cols=183 Identities=16% Similarity=0.200 Sum_probs=98.9
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHHHH
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 165 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~ 165 (647)
.+|||+|||+||+|..||+.+++.| +.++|||+...| .|+.+-|.+..-. +.+.+....
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LG-GTcLnvGcIPSKA-------------------LL~nSh~yh 97 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLG-GTCLNVGCIPSKA-------------------LLNNSHLYH 97 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccC-ceeeeccccccHH-------------------HhhhhHHHH
Confidence 4799999999999999999999999 999999987764 4556666554210 001111111
Q ss_pred HHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC
Q 006387 166 VCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTL 245 (647)
Q Consensus 166 ~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~ 245 (647)
+..+ +.+++.|++...- .+.+. .+....+..-+.+...+...+++ .+|+++.++- -..+.
T Consensus 98 ~~q~-----~~~~~rGi~vs~~---~~dl~--------~~~~~k~~~vk~Lt~gi~~lfkk-nkV~~~kG~g---sf~~p 157 (506)
T KOG1335|consen 98 EAQH-----EDFASRGIDVSSV---SLDLQ--------AMMKAKDNAVKQLTGGIENLFKK-NKVTYVKGFG---SFLDP 157 (506)
T ss_pred HHhh-----hHHHhcCccccce---ecCHH--------HHHHHHHHHHHHHhhHHHHHhhh-cCeEEEeeeE---eecCC
Confidence 1111 1345667765421 11110 00001111123333334444444 5888887742 23332
Q ss_pred CCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCC--CCCCCcchHHHHHHH-------cCCeecCcccccc
Q 006387 246 DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTT--NPLVATGDGMAMAHR-------AQAVISNMEFVQF 316 (647)
Q Consensus 246 ~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~--~~~~~tGdg~~~a~~-------aGa~l~~~e~~q~ 316 (647)
+ + |.+ ...+|+...|+||.+|+|||+--..||.-+ +....+.+|-.-..+ +|+.++++|+...
T Consensus 158 ~----~---V~v-~k~dg~~~ii~aKnIiiATGSeV~~~PGI~IDekkIVSStgALsL~~vPk~~~viG~G~IGLE~gsV 229 (506)
T KOG1335|consen 158 N----K---VSV-KKIDGEDQIIKAKNIIIATGSEVTPFPGITIDEKKIVSSTGALSLKEVPKKLTVIGAGYIGLEMGSV 229 (506)
T ss_pred c----e---EEE-eccCCCceEEeeeeEEEEeCCccCCCCCeEecCceEEecCCccchhhCcceEEEEcCceeeeehhhH
Confidence 2 2 233 234677889999999999997444444211 111122222222211 5777777776554
Q ss_pred c
Q 006387 317 H 317 (647)
Q Consensus 317 ~ 317 (647)
+
T Consensus 230 ~ 230 (506)
T KOG1335|consen 230 W 230 (506)
T ss_pred H
Confidence 3
No 93
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.51 E-value=7.3e-14 Score=153.71 Aligned_cols=42 Identities=31% Similarity=0.532 Sum_probs=34.9
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGG 132 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Gg 132 (647)
|||+|||||+||+.||+.|++.| +|+|+||... |+++.+.|.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~~--GG~c~n~gc 43 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGPL--GGTCVNVGC 43 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCcc--cCCeeeecE
Confidence 79999999999999999999999 9999999763 333444443
No 94
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.51 E-value=2.3e-13 Score=149.75 Aligned_cols=33 Identities=45% Similarity=0.609 Sum_probs=31.1
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC-CeEEEEec
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKA 119 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~ 119 (647)
.+|||+|||||+||+.||+.|++.| +|+|||+.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3599999999999999999999999 99999994
No 95
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.51 E-value=9.3e-14 Score=151.75 Aligned_cols=46 Identities=30% Similarity=0.435 Sum_probs=37.2
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCe
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGV 133 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi 133 (647)
+|||+|||||+||++||..|++.| +|+|+||....-|+++.+.|.+
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gci 49 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCI 49 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccc
Confidence 699999999999999999999999 9999999863224444444443
No 96
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.50 E-value=2e-13 Score=128.51 Aligned_cols=140 Identities=22% Similarity=0.282 Sum_probs=91.1
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCee--eecCCCCCHHHHHHHHHHhcccCCCHHH
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVS--AVLCPSDSVESHMQDTIVAGAYLCDDET 162 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~--~~~~~~d~~~~~~~~~~~~g~~~~~~~~ 162 (647)
..++||+|||+||+||+||+.|++.| ||+|+|+....+|.... ||+. ...
T Consensus 15 ~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~--Gg~lf~~iV------------------------- 67 (230)
T PF01946_consen 15 YLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWG--GGMLFNKIV------------------------- 67 (230)
T ss_dssp HTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS---CTT---EE-------------------------
T ss_pred hccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccc--cccccchhh-------------------------
Confidence 45799999999999999999999999 99999998877654422 3321 110
Q ss_pred HHHHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEE
Q 006387 163 VRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLL 242 (647)
Q Consensus 163 ~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~ 242 (647)
. ..++...|+++|+++....+|.+. ..+..+...|..++.+ .|++|++.+.|.+++
T Consensus 68 ----V--q~~a~~iL~elgi~y~~~~~g~~v-----------------~d~~~~~s~L~s~a~~-aGakifn~~~vEDvi 123 (230)
T PF01946_consen 68 ----V--QEEADEILDELGIPYEEYGDGYYV-----------------ADSVEFTSTLASKAID-AGAKIFNLTSVEDVI 123 (230)
T ss_dssp ----E--ETTTHHHHHHHT---EE-SSEEEE-----------------S-HHHHHHHHHHHHHT-TTEEEEETEEEEEEE
T ss_pred ----h--hhhHHHHHHhCCceeEEeCCeEEE-----------------EcHHHHHHHHHHHHhc-CCCEEEeeeeeeeeE
Confidence 0 001234567789988765554321 1355778888888887 699999999999999
Q ss_pred ecCCCCCCeEEEEEEEecC------CCeEEEEEcCeEEECCCc
Q 006387 243 TTLDGPDAVCHGVDTLNVE------TQEVVRFISKVTLLASGG 279 (647)
Q Consensus 243 ~~~~g~~~~v~Gv~~~~~~------~g~~~~i~Ak~VVlAtGg 279 (647)
..+++ ||.|+++..+. .=....|+||.||-|||-
T Consensus 124 ~r~~~---rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGH 163 (230)
T PF01946_consen 124 VREDD---RVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGH 163 (230)
T ss_dssp EECSC---EEEEEEEEEHHHHTT--T-B-EEEEESEEEE---S
T ss_pred EEcCC---eEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCC
Confidence 87545 99999885321 113468999999999993
No 97
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.50 E-value=4.3e-13 Score=134.29 Aligned_cols=144 Identities=22% Similarity=0.243 Sum_probs=100.4
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHHHH
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 165 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~ 165 (647)
.++||+|||||+||++||+.|++.| +|+|+||....++++. .||..... ...
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~--~gg~~~~~------------------~~~------- 72 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSW--GGGMLFSK------------------IVV------- 72 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc--CCCcceec------------------ccc-------
Confidence 4799999999999999999999999 9999999987765432 12221100 000
Q ss_pred HHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC
Q 006387 166 VCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTL 245 (647)
Q Consensus 166 ~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~ 245 (647)
.....++++++|+++....++.+. . ....+...|.+++.+. |+++++++.+.+++.++
T Consensus 73 ----~~~~~~~l~~~gi~~~~~~~g~~~---------------~--~~~el~~~L~~~a~e~-GV~I~~~t~V~dli~~~ 130 (254)
T TIGR00292 73 ----EKPAHEILDEFGIRYEDEGDGYVV---------------A--DSAEFISTLASKALQA-GAKIFNGTSVEDLITRD 130 (254)
T ss_pred ----cchHHHHHHHCCCCeeeccCceEE---------------e--eHHHHHHHHHHHHHHc-CCEEECCcEEEEEEEeC
Confidence 012345667889888654333111 0 2346788898888874 89999999999999864
Q ss_pred CCCCCeEEEEEEEecC---C---CeEEEEEcCeEEECCCccc
Q 006387 246 DGPDAVCHGVDTLNVE---T---QEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 246 ~g~~~~v~Gv~~~~~~---~---g~~~~i~Ak~VVlAtGg~~ 281 (647)
++ .+|.||++.... . .+...|+|+.||.|||..+
T Consensus 131 ~~--~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a 170 (254)
T TIGR00292 131 DT--VGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDA 170 (254)
T ss_pred CC--CceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCc
Confidence 42 268898873210 1 1346899999999999655
No 98
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.50 E-value=1.8e-13 Score=150.13 Aligned_cols=42 Identities=33% Similarity=0.539 Sum_probs=35.1
Q ss_pred CEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCe
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGV 133 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi 133 (647)
+|+|||||+||+.||..|++.| +|+||||... |+++.+.|.+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~--GG~c~n~gci 44 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADL--GGTCLNEGCM 44 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc--cccCCCCccc
Confidence 7999999999999999999999 9999999764 4455555533
No 99
>PRK07846 mycothione reductase; Reviewed
Probab=99.50 E-value=2e-13 Score=149.19 Aligned_cols=40 Identities=20% Similarity=0.339 Sum_probs=31.9
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCC
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQG 131 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~G 131 (647)
+|||+|||+|++|..||..+ .| +|+|||+... |+++.+.|
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~--~G~~V~lie~~~~--GGtC~n~G 41 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF--ADKRIAIVEKGTF--GGTCLNVG 41 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH--CCCeEEEEeCCCC--CCcccCcC
Confidence 38999999999999998764 59 9999998654 44555555
No 100
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.49 E-value=1.4e-13 Score=152.02 Aligned_cols=32 Identities=41% Similarity=0.668 Sum_probs=30.6
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC-CeEEEEec
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKA 119 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~ 119 (647)
.|||+|||||+||+.||+.|++.| +|+|||+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 599999999999999999999999 99999974
No 101
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=3.5e-12 Score=125.64 Aligned_cols=188 Identities=17% Similarity=0.199 Sum_probs=110.9
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHHH
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR 164 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~ 164 (647)
..+||.||||||.+||+||-+|+..| +|+++|--.+..-.+.|--||.|...+ |-|..+.
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVG-------------------CIPKKLM 77 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVG-------------------CIPKKLM 77 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecc-------------------cccHHHH
Confidence 56899999999999999999999999 999999765544456677788876544 6666666
Q ss_pred HHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCC-CcEEEcceEEEEEEe
Q 006387 165 VVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDP-NISVFEHHFAIDLLT 243 (647)
Q Consensus 165 ~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~-gv~i~~~~~v~~l~~ 243 (647)
..+.-..+++....++|...... ... |.| ..+.+.....+...+ +-++..+-.-+..+.
T Consensus 78 HQAallG~al~da~kyGW~~~e~---~ik------hdW-----------~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~N 137 (503)
T KOG4716|consen 78 HQAALLGEALHDARKYGWNVDEQ---KIK------HDW-----------NKLVKSVQNHIKSLNWGYRVQLREKKVEYIN 137 (503)
T ss_pred HHHHHHHHHHHHHHhhCCCCccc---ccc------ccH-----------HHHHHHHHHHhhhccceEEEEeccceeeeee
Confidence 66666677788888888776532 110 111 134445555554321 111211111111111
Q ss_pred cCCCCCCeEE---EEEEEecCCCeEEEEEcCeEEECCCcccccCCCCC-CCCCCcchHHHHH-H------HcCCeecCcc
Q 006387 244 TLDGPDAVCH---GVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTT-NPLVATGDGMAMA-H------RAQAVISNME 312 (647)
Q Consensus 244 ~~~g~~~~v~---Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~-~~~~~tGdg~~~a-~------~aGa~l~~~e 312 (647)
. -+ ..+ -+...+ ..|+...+.|..+|+|||+.++...... ..-..|.|.+... + -.||.++.+|
T Consensus 138 s-yg---eFv~~h~I~at~-~~gk~~~~ta~~fvIatG~RPrYp~IpG~~Ey~ITSDDlFsl~~~PGkTLvVGa~YVaLE 212 (503)
T KOG4716|consen 138 S-YG---EFVDPHKIKATN-KKGKERFLTAENFVIATGLRPRYPDIPGAKEYGITSDDLFSLPYEPGKTLVVGAGYVALE 212 (503)
T ss_pred c-ce---eecccceEEEec-CCCceEEeecceEEEEecCCCCCCCCCCceeeeecccccccccCCCCceEEEccceeeee
Confidence 0 01 111 122333 3466778999999999998876432111 1112344433322 2 2677888888
Q ss_pred ccccc
Q 006387 313 FVQFH 317 (647)
Q Consensus 313 ~~q~~ 317 (647)
..-|.
T Consensus 213 CAgFL 217 (503)
T KOG4716|consen 213 CAGFL 217 (503)
T ss_pred hhhhH
Confidence 76664
No 102
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.47 E-value=1.8e-14 Score=149.87 Aligned_cols=187 Identities=17% Similarity=0.173 Sum_probs=114.5
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccc----cCCCeeeec----CCCCCHHHHHHH-------
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNY----AQGGVSAVL----CPSDSVESHMQD------- 149 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~----a~Ggi~~~~----~~~d~~~~~~~~------- 149 (647)
..+|||||||||..|..+|+.++.+| +|.|||++++.+|.|+. .+||+.... ..+-.....+.+
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkSTKLiHGGVRYLekAi~~lD~~qyrlV~eaL~ER~~ 144 (680)
T KOG0042|consen 65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTKLIHGGVRYLEKAISNLDYEQYRLVKEALNERAN 144 (680)
T ss_pred CCcccEEEECCCccCcceeehhhcccceeEEEecccccCCccccchhhhcccHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999 99999999998886654 457776431 111111111111
Q ss_pred HHHhcccCCCHHHHHHHHHHhHHHHHHHH----HcCCCcccCCCCCccccccC-----------------Cccccceeec
Q 006387 150 TIVAGAYLCDDETVRVVCTEGPDRIRELI----AIGASFDRGEDGNLHLAREG-----------------GHSHHRIVHA 208 (647)
Q Consensus 150 ~~~~g~~~~~~~~~~~~~~~~~~~i~~l~----~~Gv~~~~~~~g~~~~~~~g-----------------g~~~~r~~~~ 208 (647)
+++...+++.+-.+..- ...|++ -.|+++...-.|.-.+...- .-...-..|.
T Consensus 145 lle~APhLs~~lPImlP------vy~wwQvpYyw~G~K~YD~vAG~k~Lk~S~~lSk~~alE~fPmL~~~~L~Ga~VYyD 218 (680)
T KOG0042|consen 145 LLEIAPHLSQPLPIMLP------VYKWWQVPYYWVGLKIYDLVAGSKNLKSSYFLSKKEALEIFPMLRKDNLKGAMVYYD 218 (680)
T ss_pred HhhcCccccCCcceeee------hhhhhhhhheeecceeeeeeccccccccceeecHHHHHHhCccccccCceeEEEEec
Confidence 22223333332111111 122322 12444332222211110000 0000011223
Q ss_pred cCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006387 209 ADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 209 ~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 282 (647)
++..-..+.-.+.-.+.. .|.++.++.+|.+|++++++ ++.|+.+.|..||+.+.|+||.||.|||.|+-
T Consensus 219 GQ~nDaRmnl~vAlTA~r-~GA~v~Nh~ev~~Llkd~~~---kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsD 288 (680)
T KOG0042|consen 219 GQHNDARMNLAVALTAAR-NGATVLNHVEVVSLLKDKDG---KVIGARARDHITGKEYEIRAKVVVNATGPFSD 288 (680)
T ss_pred CCCchHHHHHHHHHHHHh-cchhhhhHHHHHHHhhCCCC---ceeeeEEEEeecCcEEEEEEEEEEeCCCCccH
Confidence 333334454555545554 49999999999999999777 89999999999999999999999999998874
No 103
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.46 E-value=1.8e-13 Score=152.21 Aligned_cols=114 Identities=21% Similarity=0.312 Sum_probs=76.7
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHHH
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR 164 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~ 164 (647)
...|||+|||||+||++||++|++.| +|+|+++. .||...... ++
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~-~~------------------------------- 254 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTM-GI------------------------------- 254 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccC-cc-------------------------------
Confidence 44699999999999999999999999 99999764 222110000 00
Q ss_pred HHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEec
Q 006387 165 VVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT 244 (647)
Q Consensus 165 ~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~ 244 (647)
+. -.++ ....+..+...|.+.+.+. |++++.+++|+++..+
T Consensus 255 ----------~~--~~~~--------------------------~~~~~~~l~~~l~~~~~~~-gv~i~~~~~V~~I~~~ 295 (517)
T PRK15317 255 ----------EN--FISV--------------------------PETEGPKLAAALEEHVKEY-DVDIMNLQRASKLEPA 295 (517)
T ss_pred ----------cc--cCCC--------------------------CCCCHHHHHHHHHHHHHHC-CCEEEcCCEEEEEEec
Confidence 00 0000 0123567778888888774 8999999999999875
Q ss_pred CCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006387 245 LDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 245 ~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 282 (647)
+ + ..-+.. .+|+ .+.++.||+|||...+
T Consensus 296 ~-~----~~~V~~---~~g~--~i~a~~vViAtG~~~r 323 (517)
T PRK15317 296 A-G----LIEVEL---ANGA--VLKAKTVILATGARWR 323 (517)
T ss_pred C-C----eEEEEE---CCCC--EEEcCEEEECCCCCcC
Confidence 3 2 112222 3453 5899999999998654
No 104
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.45 E-value=4.1e-13 Score=146.89 Aligned_cols=40 Identities=20% Similarity=0.317 Sum_probs=31.6
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCC
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQG 131 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~G 131 (647)
+|||+|||+|++|..||..+ .| +|+|||+... |+++.+.|
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~--~g~~V~lie~~~~--GGtC~n~G 42 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF--ADKRIAIVEKGTF--GGTCLNVG 42 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH--CCCeEEEEeCCCC--CCeeeccC
Confidence 58999999999999987554 69 9999998654 44555555
No 105
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.44 E-value=2.7e-13 Score=151.78 Aligned_cols=52 Identities=25% Similarity=0.261 Sum_probs=41.0
Q ss_pred cCceEECCCCCcccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhcc
Q 006387 436 CGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKST 495 (647)
Q Consensus 436 ~GGi~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~ 495 (647)
.|.|.||++++|++||+||+|||++.+. ..+..|+-.|++||.++.+|+...
T Consensus 260 ~G~I~vd~~~~Ts~p~IyAaGDv~~~~~--------~~v~~A~~~G~~Aa~~i~~~l~~~ 311 (555)
T TIGR03143 260 RGYIPTNEDMETNVPGVYAAGDLRPKEL--------RQVVTAVADGAIAATSAERYVKEL 311 (555)
T ss_pred CCeEEeCCccccCCCCEEEceeccCCCc--------chheeHHhhHHHHHHHHHHHHHhh
Confidence 4779999999999999999999962111 124468888999999999988543
No 106
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.43 E-value=1.7e-11 Score=134.41 Aligned_cols=152 Identities=24% Similarity=0.246 Sum_probs=88.7
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCC--CccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHHHH
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES--NTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 165 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G--~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~ 165 (647)
|||+|||+|+||+.||..+++.| +|+|+|+.....| ++..+.||+.... +..+ +..-.+
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~--------l~rE-idaLGG--------- 62 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGI--------LVKE-IDALGG--------- 62 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccch--------hhhh-hhcccc---------
Confidence 79999999999999999999999 9999998743222 2222334442110 0000 000000
Q ss_pred HHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC
Q 006387 166 VCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTL 245 (647)
Q Consensus 166 ~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~ 245 (647)
.........++.|... ......+...+| .......+...+.+.+.+.+|++++.+ .|++++.++
T Consensus 63 ------~~~~~~d~~~i~~r~l-----n~skgpAV~~~R----aQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~ 126 (617)
T TIGR00136 63 ------LMGKAADKAGLQFRVL-----NSSKGPAVRATR----AQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILED 126 (617)
T ss_pred ------hHHHHHHhhceeheec-----ccCCCCcccccH----HhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEec
Confidence 0011112222222210 000001111111 122355677888888888779999866 688887653
Q ss_pred CCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006387 246 DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 246 ~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 282 (647)
++ ++.||.+. +|. .|.|+.||+|||.|.+
T Consensus 127 ~g---~V~GV~t~---~G~--~I~Ad~VILATGtfL~ 155 (617)
T TIGR00136 127 ND---EIKGVVTQ---DGL--KFRAKAVIITTGTFLR 155 (617)
T ss_pred CC---cEEEEEEC---CCC--EEECCEEEEccCcccC
Confidence 44 68888763 353 6999999999999964
No 107
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.43 E-value=2.9e-12 Score=137.92 Aligned_cols=149 Identities=22% Similarity=0.281 Sum_probs=85.9
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHHHH
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 165 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~ 165 (647)
.+|||+|||+||||++||+.|++.| +|+|+||....+..... .+++.... .+... ...+.+ +
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~-~~~~~~~~-----l~~l~--------~~~~~~-i-- 64 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC-GGGLSPRA-----LEELI--------PDFDEE-I-- 64 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc-cceechhh-----HHHhC--------CCcchh-h--
Confidence 4699999999999999999999999 99999998877654433 22221100 00000 000000 0
Q ss_pred HHHHhHHHHHHHHHcCCCcccCCCCCccccc--cCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEe
Q 006387 166 VCTEGPDRIRELIAIGASFDRGEDGNLHLAR--EGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLT 243 (647)
Q Consensus 166 ~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~--~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~ 243 (647)
..... +..+... ........ ..+... .-..+.+.|.+++.+ .|++++.++.++++..
T Consensus 65 --------~~~v~--~~~~~~~-~~~~~~~~~~~~~y~v---------~R~~fd~~La~~A~~-aGae~~~~~~~~~~~~ 123 (396)
T COG0644 65 --------ERKVT--GARIYFP-GEKVAIEVPVGEGYIV---------DRAKFDKWLAERAEE-AGAELYPGTRVTGVIR 123 (396)
T ss_pred --------heeee--eeEEEec-CCceEEecCCCceEEE---------EhHHhhHHHHHHHHH-cCCEEEeceEEEEEEE
Confidence 00000 0000000 00000000 001111 124566788888887 4999999999999998
Q ss_pred cCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006387 244 TLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 244 ~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 282 (647)
++++ .+.++.. +. .+++||.||+|+|..+.
T Consensus 124 ~~~~---~~~~~~~-----~~-~e~~a~~vI~AdG~~s~ 153 (396)
T COG0644 124 EDDG---VVVGVRA-----GD-DEVRAKVVIDADGVNSA 153 (396)
T ss_pred eCCc---EEEEEEc-----CC-EEEEcCEEEECCCcchH
Confidence 8555 4433321 22 57999999999996553
No 108
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.40 E-value=3e-12 Score=142.98 Aligned_cols=183 Identities=15% Similarity=0.150 Sum_probs=109.7
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecC--CCC--CHHHHHH--HHHHh-ccc--
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC--PSD--SVESHMQ--DTIVA-GAY-- 156 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~--~~d--~~~~~~~--~~~~~-g~~-- 156 (647)
.++||+|||||+.|+++|++|+++| +|+||||..+..|+|..+.|-+..... ..+ .....+. ..+.. ...
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~~a~~~~ 84 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCV 84 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCCCcccccccceeccchhcccCHHHHHHHHHHHHHHHHhchHhh
Confidence 4699999999999999999999999 999999998887877776664442111 011 1111110 00110 000
Q ss_pred -------CC-CHHHHHHHHHHhHHHHHHHHHcCCCcccCCC-------CCccccccCCccccceeeccCCchHHHHHHHH
Q 006387 157 -------LC-DDETVRVVCTEGPDRIRELIAIGASFDRGED-------GNLHLAREGGHSHHRIVHAADMTGREIERALL 221 (647)
Q Consensus 157 -------~~-~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~-------g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~ 221 (647)
+. +.+-. ......++.+...|++...-.. ..+.....++..++ .+...+..++..+.
T Consensus 85 ~~~g~l~~~~~~~~~----~~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~l~~~~~ga~~~~----dg~vdp~rl~~al~ 156 (546)
T PRK11101 85 EPTDGLFITLPEDDL----AFQATFIRACEEAGIEAEAIDPQQALILEPAVNPALIGAVKVP----DGTVDPFRLTAANM 156 (546)
T ss_pred cccCCceEEeccccH----HHHHHHHHHHHHcCCCcEEECHHHHHHhCCCcCccceEEEEec----CcEECHHHHHHHHH
Confidence 00 00000 0011223344556665321100 00000000111111 01124567888888
Q ss_pred HHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006387 222 EAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 222 ~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 282 (647)
..+.++ |++++++++|+++..+ ++ ++.||.+.+..+++...|+|+.||+|||.++.
T Consensus 157 ~~A~~~-Ga~i~~~t~V~~i~~~-~~---~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~ 212 (546)
T PRK11101 157 LDAKEH-GAQILTYHEVTGLIRE-GD---TVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQ 212 (546)
T ss_pred HHHHhC-CCEEEeccEEEEEEEc-CC---eEEEEEEEEcCCCcEEEEECCEEEECCChhHH
Confidence 888874 9999999999999886 44 78999988876776678999999999998763
No 109
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.37 E-value=1.9e-12 Score=133.93 Aligned_cols=48 Identities=19% Similarity=0.097 Sum_probs=38.7
Q ss_pred cCceEECCCCCcccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHh
Q 006387 436 CGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDH 491 (647)
Q Consensus 436 ~GGi~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~ 491 (647)
.|.+.||++.+|++|++||+|||+ +. .......|+..|+.||.+++++
T Consensus 252 ~g~i~v~~~~~t~~~~vya~GD~~--~~------~~~~~~~A~~~g~~aa~~i~~~ 299 (300)
T TIGR01292 252 GGYIVTDEGMRTSVPGVFAAGDVR--DK------GYRQAVTAAGDGCIAALSAERY 299 (300)
T ss_pred CCcEEECCCCccCCCCEEEeeccc--Cc------chhhhhhhhhhHHHHHHHHHhh
Confidence 478999999999999999999997 22 1134567888899999988765
No 110
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.37 E-value=1.2e-11 Score=133.08 Aligned_cols=185 Identities=19% Similarity=0.209 Sum_probs=109.9
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccC----CCeeeecCCCCC-HHHHHHH---HHHhccc
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQ----GGVSAVLCPSDS-VESHMQD---TIVAGAY 156 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~----Ggi~~~~~~~d~-~~~~~~~---~~~~g~~ 156 (647)
+.++||+|||||+.|+.+|+.|+.+| +|+|+|++++.+|.|+.++ ||..+....+.+ ..+.+.+ ..+...+
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH 89 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPH 89 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCcc
Confidence 36899999999999999999999999 9999999999988777654 555544332222 1111111 1122222
Q ss_pred CCCHHHH----------HHHHHHhHHHHHHHHHcCCC----cccCCCCC------ccccc---cCCccccceeeccCCch
Q 006387 157 LCDDETV----------RVVCTEGPDRIRELIAIGAS----FDRGEDGN------LHLAR---EGGHSHHRIVHAADMTG 213 (647)
Q Consensus 157 ~~~~~~~----------~~~~~~~~~~i~~l~~~Gv~----~~~~~~g~------~~~~~---~gg~~~~r~~~~~~~~g 213 (647)
++.|... ..+........+.+ .|+. -.+.-+.. ..+.. .|+..++ ......
T Consensus 90 ~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~l--ag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~----D~~vdd 163 (532)
T COG0578 90 LVEPLPFLLPHLPGLRDAWLIRAGLFLYDHL--AGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYP----DGVVDD 163 (532)
T ss_pred ccccCcCeEeccCCcccchHHHHHHHHHHHh--hcccccCCcceecchhhhhhcCcccchhhccceEEEc----cceech
Confidence 2221100 00011111111111 1110 00000000 00000 0011110 111233
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006387 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 282 (647)
..++..+...+.++ |.+++++++|+.++.+ ++ +.||.+.|..+|+.+.|+|+.||+|||.+..
T Consensus 164 aRLv~~~a~~A~~~-Ga~il~~~~v~~~~re-~~----v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d 226 (532)
T COG0578 164 ARLVAANARDAAEH-GAEILTYTRVESLRRE-GG----VWGVEVEDRETGETYEIRARAVVNAAGPWVD 226 (532)
T ss_pred HHHHHHHHHHHHhc-ccchhhcceeeeeeec-CC----EEEEEEEecCCCcEEEEEcCEEEECCCccHH
Confidence 45666777777774 9999999999999986 33 8999999999999999999999999998874
No 111
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.35 E-value=3.3e-12 Score=139.32 Aligned_cols=32 Identities=16% Similarity=0.313 Sum_probs=28.9
Q ss_pred CEEEECcchHHHHHHHHHHhcC---CeEEEEecCC
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG---TVAVITKAEP 121 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G---~V~llEk~~~ 121 (647)
.|+|||||+||+.||..+++.+ +|+|+|+.+.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~ 37 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRD 37 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 6999999999999999998863 8999999864
No 112
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.34 E-value=1.4e-10 Score=124.13 Aligned_cols=60 Identities=15% Similarity=0.069 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccc
Q 006387 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 281 (647)
..+.+.|.+.+++ .|++++.++.|+++..+ ++ ++.++.. .+++...+.|+.||+|||++.
T Consensus 259 ~rL~~aL~~~l~~-~Gv~I~~g~~V~~v~~~-~~---~V~~v~~---~~g~~~~i~AD~VVLAtGrf~ 318 (422)
T PRK05329 259 LRLQNALRRAFER-LGGRIMPGDEVLGAEFE-GG---RVTAVWT---RNHGDIPLRARHFVLATGSFF 318 (422)
T ss_pred HHHHHHHHHHHHh-CCCEEEeCCEEEEEEEe-CC---EEEEEEe---eCCceEEEECCEEEEeCCCcc
Confidence 3455667777776 49999999999999876 34 4655542 345556799999999999764
No 113
>PRK10262 thioredoxin reductase; Provisional
Probab=99.32 E-value=5.2e-12 Score=132.23 Aligned_cols=35 Identities=31% Similarity=0.374 Sum_probs=32.0
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
+..+||+|||||+||++||+.|+++| +|+++|+..
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~ 39 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGME 39 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeec
Confidence 45789999999999999999999999 999999754
No 114
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.30 E-value=7.1e-11 Score=130.95 Aligned_cols=183 Identities=12% Similarity=0.090 Sum_probs=100.0
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccC----CCeeeecCCCCCHHHHHHHH-------HHhc
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQ----GGVSAVLCPSDSVESHMQDT-------IVAG 154 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~----Ggi~~~~~~~d~~~~~~~~~-------~~~g 154 (647)
..|||||||||++|+++|+.|+++| +|+||||..+.+|+|..+. ||+..... . . .....+. .+..
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS~~ss~lihgG~ryl~~-~-~-~~l~~e~l~er~~l~~~~ 81 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATSSASTKLIHGGLRYLEH-Y-E-FRLVREALAEREVLLRMA 81 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccccccchHHHhhh-c-c-HHHHHHHHHHHHHHHHhC
Confidence 4699999999999999999999999 9999999988877776554 44332211 0 0 1111111 1112
Q ss_pred ccCCCHH---------HHHHH-HHHhHHHHHHHHHc-CCC------cccCCC-CCccccccCCccccceeeccCCchHHH
Q 006387 155 AYLCDDE---------TVRVV-CTEGPDRIRELIAI-GAS------FDRGED-GNLHLAREGGHSHHRIVHAADMTGREI 216 (647)
Q Consensus 155 ~~~~~~~---------~~~~~-~~~~~~~i~~l~~~-Gv~------~~~~~~-g~~~~~~~gg~~~~r~~~~~~~~g~~~ 216 (647)
..++.+- ....+ ........+.+... .+. +..... -.+.....++. ....+......+
T Consensus 82 p~~~~~l~~~~~~~~~~~~~~~~~~gl~lyd~~~~~~~l~~~~~~~~~~~~~~~~L~~~l~g~~----~~~dg~vd~~rl 157 (508)
T PRK12266 82 PHIIWPMRFVLPHRPHLRPAWMIRAGLFLYDHLGKRKSLPGSRGLDLGRDPAGSPLKPEITRGF----EYSDCWVDDARL 157 (508)
T ss_pred CCcccccceEEEecccccchHHHHHHHHHHHhhcCCCCCChhhhhchhhcccCCCcchhhcEEE----EEcCcccCHHHH
Confidence 2221110 00000 00000001111000 000 000000 00000000100 011112245667
Q ss_pred HHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006387 217 ERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 217 ~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 282 (647)
+..+...+.+. |++++++++|+++..+ ++ ..++.+.+..+|+...|+|+.||+|+|.++.
T Consensus 158 ~~~l~~~A~~~-Ga~i~~~~~V~~i~~~-~~----~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~ 217 (508)
T PRK12266 158 VVLNARDAAER-GAEILTRTRVVSARRE-NG----LWHVTLEDTATGKRYTVRARALVNAAGPWVK 217 (508)
T ss_pred HHHHHHHHHHc-CCEEEcCcEEEEEEEe-CC----EEEEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence 77887788774 9999999999999875 33 3467776655676678999999999998763
No 115
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.28 E-value=4.9e-11 Score=134.85 Aligned_cols=192 Identities=18% Similarity=0.201 Sum_probs=106.5
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccC----CCeeeecCC------CC---CHHHH--HHHH
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQ----GGVSAVLCP------SD---SVESH--MQDT 150 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~----Ggi~~~~~~------~d---~~~~~--~~~~ 150 (647)
.+|||||||||+.|+++|+.|+++| +|+||||+.+.+|.|..+. ||+...... .+ ..+.. ....
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~GtSsrss~lihgg~ryl~~~~~~~~~~~~~l~~e~l~er~~l 149 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFQLDYGQLKLVFHALEERKQL 149 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCCcccchhhhhhhHHHHHHHHhhCCCccceeehHHHHHHHHHH
Confidence 4599999999999999999999999 9999999998888776654 343321110 00 00110 0111
Q ss_pred HHhcccCCCH--------HHHH-HHHHHhHHHHHHHH-HcCCCcccCCCC----C--ccccccC-Cccccceeec--cCC
Q 006387 151 IVAGAYLCDD--------ETVR-VVCTEGPDRIRELI-AIGASFDRGEDG----N--LHLAREG-GHSHHRIVHA--ADM 211 (647)
Q Consensus 151 ~~~g~~~~~~--------~~~~-~~~~~~~~~i~~l~-~~Gv~~~~~~~g----~--~~~~~~g-g~~~~r~~~~--~~~ 211 (647)
++....++.+ .... .+........+.+. ..+++....-+. . ..+.... .......+.. +..
T Consensus 150 ~~~ap~l~~~l~~~~p~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~~e~~~~~P~L~~~~~~~~l~ga~~~~Dg~v 229 (627)
T PLN02464 150 IENAPHLCHALPIMTPCYDWFEVPYYWAGLKAYDLVAGPRLLHLSRYYSAKESLELFPTLAKKGKDGSLKGTVVYYDGQM 229 (627)
T ss_pred HhhChhhccccceeeeccchhhhHHHHHHHHHHHHhcCCcCCCCceEECHHHHHHhCCCCCccccccceeEEEEecCcEE
Confidence 2221222211 0000 00000001111110 011110000000 0 0000000 0000111111 122
Q ss_pred chHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC-CCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006387 212 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTL-DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 212 ~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~-~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 282 (647)
.+..+...|.+.+.+. |+++++++.|+++..++ ++ ++.||.+.|..+++.+.|+|+.||+|+|.++.
T Consensus 230 dp~rl~~al~~~A~~~-Ga~i~~~~~V~~l~~~~~~g---~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~ 297 (627)
T PLN02464 230 NDSRLNVALACTAALA-GAAVLNYAEVVSLIKDESTG---RIVGARVRDNLTGKEFDVYAKVVVNAAGPFCD 297 (627)
T ss_pred cHHHHHHHHHHHHHhC-CcEEEeccEEEEEEEecCCC---cEEEEEEEECCCCcEEEEEeCEEEECCCHhHH
Confidence 4678888999999885 99999999999998764 34 68899888776777667999999999998874
No 116
>PRK10015 oxidoreductase; Provisional
Probab=99.28 E-value=4.1e-11 Score=130.08 Aligned_cols=153 Identities=21% Similarity=0.283 Sum_probs=84.6
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHHHH
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 165 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~ 165 (647)
.+|||||||||+||++||+.|++.| +|+||||...++... .. ||.... ...+.++.+ +.....+..
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~-~~-gg~i~~----~~~~~l~~~-------~~~~~~i~~ 70 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKN-MT-GGRLYA----HTLEAIIPG-------FAASAPVER 70 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCccc-cc-Cceeec----ccHHHHccc-------ccccCCccc
Confidence 4699999999999999999999999 999999988754322 22 333211 011111000 000000000
Q ss_pred HHHHhHHHHHHHHHcCCCcccCCCCCcccc---------ccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcce
Q 006387 166 VCTEGPDRIRELIAIGASFDRGEDGNLHLA---------REGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHH 236 (647)
Q Consensus 166 ~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~---------~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~ 236 (647)
......+.+.. .++..... ...++.. .-..+.+.|.+++++ .|++++.++
T Consensus 71 ----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v---------~R~~fd~~L~~~a~~-~Gv~i~~~~ 129 (429)
T PRK10015 71 ----------KVTREKISFLT-EESAVTLDFHREQPDVPQHASYTV---------LRNRLDPWLMEQAEQ-AGAQFIPGV 129 (429)
T ss_pred ----------cccceeEEEEe-CCCceEeecccCCCCCCCcCceEe---------ehhHHHHHHHHHHHH-cCCEEECCc
Confidence 00000000000 00000000 0001111 123456678888877 599999999
Q ss_pred EEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006387 237 FAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 237 ~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 283 (647)
.|+++..+ ++ ++.++.. ++ ..|+|+.||+|+|..+.+
T Consensus 130 ~V~~i~~~-~~---~v~~v~~----~~--~~i~A~~VI~AdG~~s~v 166 (429)
T PRK10015 130 RVDALVRE-GN---KVTGVQA----GD--DILEANVVILADGVNSML 166 (429)
T ss_pred EEEEEEEe-CC---EEEEEEe----CC--eEEECCEEEEccCcchhh
Confidence 99999875 44 5666542 12 269999999999976543
No 117
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.26 E-value=1.9e-10 Score=126.39 Aligned_cols=179 Identities=14% Similarity=0.110 Sum_probs=97.9
Q ss_pred ccccCEEEECcchHHHHHHHHHHhc--C-CeEEEEecCCCCCCccccCCCeeeecCCCCCHHH-----------------
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVES----------------- 145 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~--G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~----------------- 145 (647)
+.++||+|||||++|+++|++|+++ | +|+|||++....|+|..+.|.+............
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~g~GaSgrn~G~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 101 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCGAGASGRNGGCMLTWSTKFFTLKRLFGEAEAARLVKASEQA 101 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCccccccccccCccccccccCHHHHHHhhCHHHHHHHHHHHHHH
Confidence 4579999999999999999999998 8 9999999988788887776644321110000000
Q ss_pred --HHHHHHHhcccCC------------CHHHHHHHHHHhHHHHHHHHHcCCC-cccCCCCCccccccCCccccceee-cc
Q 006387 146 --HMQDTIVAGAYLC------------DDETVRVVCTEGPDRIRELIAIGAS-FDRGEDGNLHLAREGGHSHHRIVH-AA 209 (647)
Q Consensus 146 --~~~~~~~~g~~~~------------~~~~~~~~~~~~~~~i~~l~~~Gv~-~~~~~~g~~~~~~~gg~~~~r~~~-~~ 209 (647)
.+.+..+....-| +++.. +...+..+.+.++|++ +..-....+. ...+.......++ +.
T Consensus 102 ~~~~~~l~~~~~i~~~~~~~G~l~~a~~~~~~----~~l~~~~~~~~~~G~~~~~~l~~~e~~-~~~~~~~~~~g~~~~~ 176 (460)
T TIGR03329 102 VLEIAAFCEQHNIDAQLRLDGTLYTATNPAQV----GSMDPVVDALERRGINSWQRLSEGELA-RRTGSARHLEGFYSPV 176 (460)
T ss_pred HHHHHHHHHHhCCCCCcccCCEEEEecCHHHH----HHHHHHHHHHHHhCCCCeEEcCHHHHH-HHhCCCcceEEEEeCC
Confidence 0111111000001 11111 1112223344445543 1110000000 0000000001111 11
Q ss_pred --CCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006387 210 --DMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 210 --~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 282 (647)
...+..++..|.+.+.+ .|++|++++.|+++... + ...|. +..| .|+|+.||+|||++..
T Consensus 177 ~g~i~P~~l~~~L~~~a~~-~Gv~i~~~t~V~~i~~~--~----~~~v~---t~~g---~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 177 AASVQPGLLVRGLRRVALE-LGVEIHENTPMTGLEEG--Q----PAVVR---TPDG---QVTADKVVLALNAWMA 238 (460)
T ss_pred CeEECHHHHHHHHHHHHHH-cCCEEECCCeEEEEeeC--C----ceEEE---eCCc---EEECCEEEEccccccc
Confidence 12467788999988887 49999999999998642 2 22232 2445 4899999999998864
No 118
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=7.6e-13 Score=130.71 Aligned_cols=62 Identities=18% Similarity=0.173 Sum_probs=44.4
Q ss_pred chHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccc
Q 006387 212 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 212 ~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 281 (647)
.|..+..+|.+.+++. .|++++-.++++|...... +...-|. ..+|. .+++|.||||||..-
T Consensus 264 eGpkl~~ale~Hv~~Y-~vDimn~qra~~l~~a~~~--~~l~ev~---l~nGa--vLkaktvIlstGArW 325 (520)
T COG3634 264 EGPKLAAALEAHVKQY-DVDVMNLQRASKLEPAAVE--GGLIEVE---LANGA--VLKARTVILATGARW 325 (520)
T ss_pred cchHHHHHHHHHHhhc-CchhhhhhhhhcceecCCC--CccEEEE---ecCCc--eeccceEEEecCcch
Confidence 4667888888888874 8999999999999874221 0122233 34565 589999999999653
No 119
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.24 E-value=1.4e-10 Score=122.79 Aligned_cols=178 Identities=19% Similarity=0.217 Sum_probs=99.0
Q ss_pred CEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecC-CCC-CHHHH-------HHHHHHhcc--c-
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC-PSD-SVESH-------MQDTIVAGA--Y- 156 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~-~~d-~~~~~-------~~~~~~~g~--~- 156 (647)
||+|||||++|+++|++|++.| +|+|||+..+.++.|..+.|-+..... ..+ ..... +.+...... .
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~~~~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGDIGSGASGRSGGLVRPGISSYPDPQYARLARESVEFWRELAEEYGIPVG 80 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESSSTTSSGGGSSSEEEECSGSHHSSHHHHHHHHHHHHHHHHHHHHTTSSCE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeeccccccccccccccccccccccccccccchhhhhccchhhhhhhcCcccc
Confidence 8999999999999999999999 999999997777667655443333211 111 11111 111111100 0
Q ss_pred --------CC-CHHHHHHHHHHhHHHHHHHHHcCCCcccCCCCCcc-ccccCCccccceeeccC---CchHHHHHHHHHH
Q 006387 157 --------LC-DDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLH-LAREGGHSHHRIVHAAD---MTGREIERALLEA 223 (647)
Q Consensus 157 --------~~-~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~-~~~~gg~~~~r~~~~~~---~~g~~~~~~L~~~ 223 (647)
+. ++.... ......+.+...|+++.......+. ............++..+ .....++..|.+.
T Consensus 81 ~~~~g~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~i~~~~l~~~l~~~ 156 (358)
T PF01266_consen 81 FRPCGSLYLAEDEEDAE----SLERLLDRLRRNGIPYELLSPEELRELFPFLNPRIEGGVFFPEGGVIDPRRLIQALAAE 156 (358)
T ss_dssp EEECEEEEEESSHHHHH----HHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSSTTTEEEEEETTEEEEEHHHHHHHHHHH
T ss_pred cccccccccccchhhhh----hccccccccccccccccccchhhhhhhhcccccchhhhhcccccccccccchhhhhHHH
Confidence 01 222211 1123344455566633210000000 00000000001111111 2367899999999
Q ss_pred HHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006387 224 VVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 224 ~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 282 (647)
+.+. |++++++++|++|..+ ++ ++.||.+ .+| .|+|+.||+|+|.++.
T Consensus 157 ~~~~-Gv~i~~~~~V~~i~~~-~~---~v~gv~~---~~g---~i~ad~vV~a~G~~s~ 204 (358)
T PF01266_consen 157 AQRA-GVEIRTGTEVTSIDVD-GG---RVTGVRT---SDG---EIRADRVVLAAGAWSP 204 (358)
T ss_dssp HHHT-T-EEEESEEEEEEEEE-TT---EEEEEEE---TTE---EEEECEEEE--GGGHH
T ss_pred HHHh-hhhccccccccchhhc-cc---ccccccc---ccc---ccccceeEecccccce
Confidence 9885 9999999999999987 44 6777765 445 3899999999997654
No 120
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.23 E-value=1.6e-10 Score=126.76 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=29.5
Q ss_pred CEEEECcchHHHHHHHHHHhcC---CeEEEEecCCC
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG---TVAVITKAEPH 122 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G---~V~llEk~~~~ 122 (647)
+|+|||||+||++||..|++.+ +|+|||+.+..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~ 37 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV 37 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence 5999999999999999999875 79999998753
No 121
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.20 E-value=3.5e-10 Score=124.49 Aligned_cols=153 Identities=24% Similarity=0.300 Sum_probs=89.3
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC-CeEEEEecC-CCCCCcc-ccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHH
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE-PHESNTN-YAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETV 163 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~-~~~G~t~-~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~ 163 (647)
.+|||||||||+||+.||+.|++.| +|+|||+.. ..|+.++ .+.||+.. .++.+.+..-
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~ak---------g~lvrEidal--------- 64 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAK---------GHLVREIDAL--------- 64 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchh---------hHHHHHHHhc---------
Confidence 4699999999999999999999999 999999874 2222111 12233210 0111111100
Q ss_pred HHHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEe
Q 006387 164 RVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLT 243 (647)
Q Consensus 164 ~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~ 243 (647)
....-......++.+..... ........+| .......+...+.+.+.+.+|++++. ..|++++.
T Consensus 65 ------Gg~~g~~~d~~giq~r~ln~-----skGpAV~s~R----aQiDr~ly~kaL~e~L~~~~nV~I~q-~~V~~Li~ 128 (618)
T PRK05192 65 ------GGEMGKAIDKTGIQFRMLNT-----SKGPAVRALR----AQADRKLYRAAMREILENQPNLDLFQ-GEVEDLIV 128 (618)
T ss_pred ------CCHHHHHHhhccCceeeccc-----CCCCceeCcH----HhcCHHHHHHHHHHHHHcCCCcEEEE-eEEEEEEe
Confidence 00111222334444321100 0000000111 12234567778888887767999874 57899987
Q ss_pred cCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006387 244 TLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 244 ~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 282 (647)
+ ++ +|.||... +|. .|.|+.||+|||.|.+
T Consensus 129 e-~g---rV~GV~t~---dG~--~I~Ak~VIlATGTFL~ 158 (618)
T PRK05192 129 E-NG---RVVGVVTQ---DGL--EFRAKAVVLTTGTFLR 158 (618)
T ss_pred c-CC---EEEEEEEC---CCC--EEECCEEEEeeCcchh
Confidence 6 44 78888763 353 6999999999998764
No 122
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=99.19 E-value=2e-10 Score=118.77 Aligned_cols=62 Identities=19% Similarity=0.346 Sum_probs=47.4
Q ss_pred HHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCC-eEEEEEcCeEEECCCccc
Q 006387 218 RALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQ-EVVRFISKVTLLASGGAG 281 (647)
Q Consensus 218 ~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g-~~~~i~Ak~VVlAtGg~~ 281 (647)
..++..+.+++|++|++++.|+.|+.+.++ .+++||.+.+..+. ....+.+|.||||+|.+.
T Consensus 196 ~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~--~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~ 258 (296)
T PF00732_consen 196 TTYLPPALKRPNLTLLTNARVTRIIFDGDG--GRATGVEYVDNDGGVQRRIVAAKEVILAAGAIG 258 (296)
T ss_dssp HHHHHHHTTTTTEEEEESEEEEEEEEETTS--TEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHH
T ss_pred hcccchhhccCCccEEcCcEEEEEeeeccc--cceeeeeeeecCCcceeeeccceeEEeccCCCC
Confidence 445555556679999999999999875333 38999999986655 356788999999999775
No 123
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.19 E-value=5.1e-10 Score=120.68 Aligned_cols=52 Identities=27% Similarity=0.254 Sum_probs=36.9
Q ss_pred CceEECCCCCcccCceeecccccCCCC-CCCC-ccchhhhHHHHHHHHHHHHHHHH
Q 006387 437 GGVRAGLQGETNVRGLYVAGEVACTGL-HGAN-RLASNSLLEALVFARRAVQPSID 490 (647)
Q Consensus 437 GGi~vD~~~~T~ipGLyAaGe~a~~g~-~Ga~-rl~g~sl~~a~v~G~~Ag~~a~~ 490 (647)
|||.||+++||++|++||+|||+.... .|.. ++ .....|.-.|++||++++.
T Consensus 255 ~gi~vd~~~~ts~~~IyA~GD~a~~~~~~g~~~~~--~~~~~A~~qg~~aa~ni~g 308 (396)
T PRK09754 255 NGIVIDEACRTCDPAIFAGGDVAITRLDNGALHRC--ESWENANNQAQIAAAAMLG 308 (396)
T ss_pred CCEEECCCCccCCCCEEEccceEeeeCCCCCEEEE--CcHHHHHHHHHHHHHHhcC
Confidence 789999999999999999999972111 1111 11 1235677889999888764
No 124
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.18 E-value=4e-10 Score=125.02 Aligned_cols=187 Identities=13% Similarity=0.075 Sum_probs=100.0
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeee---cCCCC--CHHHHH---HHHHHhccc
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAV---LCPSD--SVESHM---QDTIVAGAY 156 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~---~~~~d--~~~~~~---~~~~~~g~~ 156 (647)
+.++||||||||++|+++|+.|+++| +|+||||..+.+|+|..+.+-+... ....+ -..+.+ ...++...+
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~~ss~lihgg~ryl~~~~~~l~~e~~~e~~~l~~~ap~ 83 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSRSGKLVHGGLRYLEYYEFRLVREALIEREVLLAAAPH 83 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCchhhhhhHHHHHHHHHhccHHHHHHHHHHHHHHHHhCCc
Confidence 34699999999999999999999999 9999999998887776655433211 00000 000000 011122222
Q ss_pred CCCHHH---------H-HHHHHHhHHHHHHHHHcCCCcccCCCCCcccc----ccCC-ccccceee--ccCCchHHHHHH
Q 006387 157 LCDDET---------V-RVVCTEGPDRIRELIAIGASFDRGEDGNLHLA----REGG-HSHHRIVH--AADMTGREIERA 219 (647)
Q Consensus 157 ~~~~~~---------~-~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~----~~gg-~~~~r~~~--~~~~~g~~~~~~ 219 (647)
+..+-. . ....... +..+..++..-.......+... ...- ......+. ........++..
T Consensus 84 l~~~~~~~~~~~~~~~~~~~~~~g---~~ly~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~a~~~~dg~vd~~rl~~~ 160 (502)
T PRK13369 84 IIWPMRFVLPHSPEDRPAWLVRLG---LFLYDHLGGRKRLPGTRTLDLRRDPEGAPLKPEYTKGFEYSDCWVDDARLVVL 160 (502)
T ss_pred cccccceEEecccccccHHHHHHH---HHHHHhccCCCCCCcceEechhhccccCCchHhcCEEEEEcCeeecHHHHHHH
Confidence 211110 0 0000000 0111111210000000000000 0000 00001111 112245677788
Q ss_pred HHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006387 220 LLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 220 L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 282 (647)
+...+.+ .|++++++++|+++..+ ++ ..++.+.+.. |+..+|+|+.||+|+|.++.
T Consensus 161 l~~~a~~-~Ga~i~~~~~V~~i~~~-~~----~~~v~~~~~~-g~~~~i~a~~VVnAaG~wa~ 216 (502)
T PRK13369 161 NALDAAE-RGATILTRTRCVSARRE-GG----LWRVETRDAD-GETRTVRARALVNAAGPWVT 216 (502)
T ss_pred HHHHHHH-CCCEEecCcEEEEEEEc-CC----EEEEEEEeCC-CCEEEEEecEEEECCCccHH
Confidence 8888877 49999999999999875 33 4567666644 77778999999999998774
No 125
>PRK12831 putative oxidoreductase; Provisional
Probab=99.18 E-value=6.8e-11 Score=129.49 Aligned_cols=49 Identities=20% Similarity=0.328 Sum_probs=41.3
Q ss_pred cCceEECCC-CCcccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhh
Q 006387 436 CGGVRAGLQ-GETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 493 (647)
Q Consensus 436 ~GGi~vD~~-~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~ 493 (647)
.|.|.||++ ++|++||+||+|||+ +|. ..+..|+-.|+.||.++.+|+.
T Consensus 412 ~G~i~vd~~~~~Ts~pgVfAaGD~~-~g~--------~~v~~Ai~~G~~AA~~I~~~L~ 461 (464)
T PRK12831 412 RGCIVADEETGLTSKEGVFAGGDAV-TGA--------ATVILAMGAGKKAAKAIDEYLS 461 (464)
T ss_pred CCcEEECCCCCccCCCCEEEeCCCC-CCc--------hHHHHHHHHHHHHHHHHHHHhc
Confidence 477999998 899999999999997 332 2467889999999999998874
No 126
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.16 E-value=2.5e-11 Score=131.82 Aligned_cols=146 Identities=21% Similarity=0.242 Sum_probs=35.6
Q ss_pred CEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHHHHHHH
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCT 168 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~ 168 (647)
||||||||+||++||+.|++.| +|+|||+....||... .++........ .... .. ..
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t--~~~~~~~~~~~-~~~~----------------~~---~g 58 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMAT--SGGVSPFDGNH-DEDQ----------------VI---GG 58 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGG--GSSS-EETTEE-HHHH----------------HH---HH
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcce--ECCcCChhhcc-hhhc----------------cC---CC
Confidence 8999999999999999999999 9999999998877543 23333222110 0000 00 00
Q ss_pred HhHHHHHHHHHcCCC-cccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCC
Q 006387 169 EGPDRIRELIAIGAS-FDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 247 (647)
Q Consensus 169 ~~~~~i~~l~~~Gv~-~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g 247 (647)
-..+.++.+...+-. .. ...+... .. ......+...|.+.+.+ .|++|+.++.+++++.+ ++
T Consensus 59 i~~e~~~~~~~~~~~~~~-~~~~~~~----------~~----~~~~~~~~~~l~~~l~e-~gv~v~~~t~v~~v~~~-~~ 121 (428)
T PF12831_consen 59 IFREFLNRLRARGGYPQE-DRYGWVS----------NV----PFDPEVFKAVLDEMLAE-AGVEVLLGTRVVDVIRD-GG 121 (428)
T ss_dssp HHHHHHHST-----------------------------------------------------------------------
T ss_pred HHHHHHHHHhhhcccccc-ccccccc----------cc----ccccccccccccccccc-ccccccccccccccccc-cc
Confidence 001111111111100 00 0000000 00 00111222334444444 69999999999999997 55
Q ss_pred CCCeEEEEEEEecCCCeEEEEEcCeEEECCCc
Q 006387 248 PDAVCHGVDTLNVETQEVVRFISKVTLLASGG 279 (647)
Q Consensus 248 ~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg 279 (647)
+|.||.+.+.. | ..+|+|+.||.|||-
T Consensus 122 ---~i~~V~~~~~~-g-~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 122 ---RITGVIVETKS-G-RKEIRAKVFIDATGD 148 (428)
T ss_dssp --------------------------------
T ss_pred ---ccccccccccc-c-ccccccccccccccc
Confidence 79999987643 5 668999999999994
No 127
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.15 E-value=2e-09 Score=115.84 Aligned_cols=31 Identities=32% Similarity=0.591 Sum_probs=30.2
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEec
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKA 119 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~ 119 (647)
|||+||||||||++||+.|++.| +|+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 79999999999999999999999 99999997
No 128
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.15 E-value=1.1e-10 Score=127.59 Aligned_cols=48 Identities=17% Similarity=0.342 Sum_probs=39.6
Q ss_pred cCceEECCCCCcccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhh
Q 006387 436 CGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHK 492 (647)
Q Consensus 436 ~GGi~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~ 492 (647)
.|+|.||++++|++||+||+||++ +|. ..+..|+-.|+.||.++.+|+
T Consensus 402 ~G~i~vd~~~~Ts~~~VfA~GD~~-~g~--------~~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 402 RGTIVVDEDQRTSIPGVFAGGDII-LGA--------ATVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred CCeEEeCCCCccCCCCEEEecCCC-CCc--------HHHHHHHHHHHHHHHHHHhhC
Confidence 478999999999999999999997 332 246688889999999887763
No 129
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.14 E-value=3.4e-10 Score=130.98 Aligned_cols=48 Identities=27% Similarity=0.452 Sum_probs=39.1
Q ss_pred cCceEECCCCCcccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhh
Q 006387 436 CGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHK 492 (647)
Q Consensus 436 ~GGi~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~ 492 (647)
.|.|.||+.++|++||+||+||++ .|. ..+..|+..|+.||.+++...
T Consensus 794 ~G~I~VDetlqTs~pgVFAaGD~a-~Gp--------~tvv~Ai~qGr~AA~nI~~~~ 841 (1019)
T PRK09853 794 KGWPVVDANGETSLTNVYMIGDVQ-RGP--------STIVAAIADARRAADAILSRE 841 (1019)
T ss_pred CCCEEeCCCcccCCCCEEEEeccc-cCc--------hHHHHHHHHHHHHHHHHhhhc
Confidence 367999999999999999999997 332 246788889999999887644
No 130
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.14 E-value=1.8e-10 Score=115.85 Aligned_cols=167 Identities=23% Similarity=0.291 Sum_probs=104.1
Q ss_pred CCccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHH
Q 006387 84 GSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDET 162 (647)
Q Consensus 84 ~~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~ 162 (647)
..+..+||||||+|.+|.+.|+.|++.| +|.||||+-. .|+..+-+.+..|.++. +
T Consensus 41 ~~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~--------------------EPdRivGEllQPGG~~~---L 97 (509)
T KOG1298|consen 41 RNDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLS--------------------EPDRIVGELLQPGGYLA---L 97 (509)
T ss_pred ccCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccc--------------------cchHHHHHhcCcchhHH---H
Confidence 3456799999999999999999999999 9999999742 23334444443333221 1
Q ss_pred HHHHHHHhHHHHHHHHHcCCCcccCC-CCC--ccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEE
Q 006387 163 VRVVCTEGPDRIRELIAIGASFDRGE-DGN--LHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAI 239 (647)
Q Consensus 163 ~~~~~~~~~~~i~~l~~~Gv~~~~~~-~g~--~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~ 239 (647)
.+.-.+++.+.++...-.|..+..+. .-. |....+......|.+|.+ .++..|.+.+...+||++.++ .|.
T Consensus 98 ~~LGl~Dcve~IDAQ~v~Gy~ifk~gk~v~~pyP~~~f~~d~~GrsFhnG-----RFvq~lR~ka~slpNV~~eeG-tV~ 171 (509)
T KOG1298|consen 98 SKLGLEDCVEGIDAQRVTGYAIFKDGKEVDLPYPLKNFPSDPSGRSFHNG-----RFVQRLRKKAASLPNVRLEEG-TVK 171 (509)
T ss_pred HHhCHHHHhhcccceEeeeeEEEeCCceeeccCCCcCCCCCcccceeecc-----HHHHHHHHHHhcCCCeEEeee-eHH
Confidence 11111222222222222333322210 000 111111222223333322 477889999988899999888 588
Q ss_pred EEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccC
Q 006387 240 DLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIY 284 (647)
Q Consensus 240 ~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~ 284 (647)
+|+.+ +| .|.||.+.+..+ +..+..|.-.|+|.|-|+++-
T Consensus 172 sLlee-~g---vvkGV~yk~k~g-ee~~~~ApLTvVCDGcfSnlR 211 (509)
T KOG1298|consen 172 SLLEE-EG---VVKGVTYKNKEG-EEVEAFAPLTVVCDGCFSNLR 211 (509)
T ss_pred HHHhc-cC---eEEeEEEecCCC-ceEEEecceEEEecchhHHHH
Confidence 88876 55 899999988654 447899999999999999753
No 131
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.13 E-value=3.2e-09 Score=114.41 Aligned_cols=44 Identities=11% Similarity=0.175 Sum_probs=36.2
Q ss_pred CcccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhh
Q 006387 446 ETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 493 (647)
Q Consensus 446 ~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~ 493 (647)
++.-+|+..+||++ +-+ +.+.|.++..|+.+|++||+.+++.+.
T Consensus 266 ~~~~~~~llvGDAA-g~v---~P~tGeGI~~A~~sg~~aa~~i~~~~~ 309 (398)
T TIGR02028 266 RRVVGRVALVGDAA-GYV---TKCSGEGIYFAAKSGRMCAEAIVEESR 309 (398)
T ss_pred cEECCCEEEEEcCC-CCC---CcccccchHHHHHHHHHHHHHHHHHHh
Confidence 34568999999998 233 678899999999999999999988764
No 132
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.12 E-value=2.5e-10 Score=110.76 Aligned_cols=31 Identities=48% Similarity=0.743 Sum_probs=28.8
Q ss_pred CEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
||+|||||+||+.||..|++.+ +|+|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 7999999999999999999999 999997754
No 133
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.12 E-value=2.6e-09 Score=115.82 Aligned_cols=45 Identities=24% Similarity=0.428 Sum_probs=38.2
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecC-CCCCCccccCCCe
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE-PHESNTNYAQGGV 133 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~-~~~G~t~~a~Ggi 133 (647)
+||+|||||++|+++|++|++.| +|+||||+. ...|+|..+.|.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~~~as~~~~g~~ 48 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAMETSFANGGQL 48 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCcCcccccCCEE
Confidence 59999999999999999999999 999999997 4556666555544
No 134
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.12 E-value=5.1e-10 Score=116.97 Aligned_cols=150 Identities=26% Similarity=0.322 Sum_probs=84.7
Q ss_pred CEEEECcchHHHHHHHHHHhcC-CeEEEE-ecCCCCCCcc-ccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHHHHH
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG-TVAVIT-KAEPHESNTN-YAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVV 166 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G-~V~llE-k~~~~~G~t~-~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~ 166 (647)
||+|||||.||+.||+.||+.| +|+|+. +....+.-++ -+-||+ ...++. +.+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~---------~kg~L~---------------~Ei 56 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGI---------AKGHLV---------------REI 56 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEEST---------THHHHH---------------HHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccc---------cccchh---------------HHH
Confidence 8999999999999999999999 999993 3332221111 111222 111111 111
Q ss_pred HHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCC
Q 006387 167 CTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLD 246 (647)
Q Consensus 167 ~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~ 246 (647)
-.............++.|......+ -..++ .+|... .-..+...+.+.+.+.+|++|+. .+|++|+.+ +
T Consensus 57 dalgg~m~~~aD~~~i~~~~lN~sk----Gpav~-a~r~qv----Dr~~y~~~~~~~l~~~~nl~i~~-~~V~~l~~e-~ 125 (392)
T PF01134_consen 57 DALGGLMGRAADETGIHFRMLNRSK----GPAVH-ALRAQV----DRDKYSRAMREKLESHPNLTIIQ-GEVTDLIVE-N 125 (392)
T ss_dssp HHTT-SHHHHHHHHEEEEEEESTTS-----GGCT-EEEEEE-----HHHHHHHHHHHHHTSTTEEEEE-S-EEEEEEC-T
T ss_pred hhhhhHHHHHHhHhhhhhhcccccC----CCCcc-chHhhc----cHHHHHHHHHHHHhcCCCeEEEE-cccceEEec-C
Confidence 1111222333344555443211000 00111 112111 23456677788888888999985 589999987 5
Q ss_pred CCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006387 247 GPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 247 g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 282 (647)
+ +|.||.. .+|+ .|.|+.||+|||.|.+
T Consensus 126 ~---~v~GV~~---~~g~--~~~a~~vVlaTGtfl~ 153 (392)
T PF01134_consen 126 G---KVKGVVT---KDGE--EIEADAVVLATGTFLN 153 (392)
T ss_dssp T---EEEEEEE---TTSE--EEEECEEEE-TTTGBT
T ss_pred C---eEEEEEe---CCCC--EEecCEEEEecccccC
Confidence 5 8999876 4565 6999999999998654
No 135
>PLN02697 lycopene epsilon cyclase
Probab=99.12 E-value=5.8e-09 Score=114.90 Aligned_cols=36 Identities=44% Similarity=0.568 Sum_probs=32.4
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCC
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~ 121 (647)
...+||+|||||+||+++|+.+++.| +|+|||+...
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p 142 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP 142 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCccc
Confidence 34699999999999999999999999 9999998643
No 136
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.12 E-value=3.3e-09 Score=114.90 Aligned_cols=183 Identities=15% Similarity=0.123 Sum_probs=101.8
Q ss_pred ccccCEEEECcchHHHHHHHHHHhc-C--CeEEEEecCCCCCCccccCCCeeeecCCCCCH------HHHHHHHHHh-cc
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKH-G--TVAVITKAEPHESNTNYAQGGVSAVLCPSDSV------ESHMQDTIVA-GA 155 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~-G--~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~------~~~~~~~~~~-g~ 155 (647)
..++||+|||||++|+++|++|+++ | +|+||||..+.+|+|..+.|.+.......... ...+.+..+. +.
T Consensus 28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~gas~~~~g~~~~~~~~~~~~~~~~~s~~l~~~l~~~~~~ 107 (407)
T TIGR01373 28 KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRNTTIVRSNYLYPESAELYEHAMKLWEGLSQDLNY 107 (407)
T ss_pred CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCcccccccceeeecccCccccHHHHHHHHHHHHHHHHhCC
Confidence 4579999999999999999999985 8 79999999887777777666554332211111 0111221111 10
Q ss_pred c--C---------CCHHHHHHHHHHhHHHHHHHHHcCCCcccCCCCCc-----cccccCCc--cccceeec---cCCchH
Q 006387 156 Y--L---------CDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNL-----HLAREGGH--SHHRIVHA---ADMTGR 214 (647)
Q Consensus 156 ~--~---------~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~-----~~~~~gg~--~~~r~~~~---~~~~g~ 214 (647)
. + .+++... ...+.++.+...|++........+ .+...++. .....++. +.....
T Consensus 108 ~~~~~~~G~l~~a~~~~~~~----~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~~~~~~~~ga~~~~~~g~v~p~ 183 (407)
T TIGR01373 108 NVMFSQRGVLNLCHSTADMD----DGARRVNAMRLNGVDAELLSPEQVRRVIPILDFSPDARFPVVGGLLQRRGGTARHD 183 (407)
T ss_pred CcCEEeccEEEEeCCHHHHH----HHHHHHHHHHHcCCCeEEeCHHHHHHhCCCCccccccccceeEEEEcCCCCcCCHH
Confidence 0 0 0111111 112223334456665421100000 00000000 00011111 112344
Q ss_pred HHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006387 215 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 215 ~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 282 (647)
.+...|.+.+.+. |++++.+++|+++..++++ ++.++.. .+| .+.|+.||+|+|++..
T Consensus 184 ~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~---~~~~v~t---~~g---~i~a~~vVvaagg~~~ 241 (407)
T TIGR01373 184 AVAWGYARGADRR-GVDIIQNCEVTGFIRRDGG---RVIGVET---TRG---FIGAKKVGVAVAGHSS 241 (407)
T ss_pred HHHHHHHHHHHHC-CCEEEeCCEEEEEEEcCCC---cEEEEEe---CCc---eEECCEEEECCChhhH
Confidence 5667788888874 9999999999999764344 4655543 345 4899999999998863
No 137
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.10 E-value=1.2e-09 Score=120.41 Aligned_cols=50 Identities=20% Similarity=0.165 Sum_probs=40.9
Q ss_pred cCceEEC-CCCCcccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhc
Q 006387 436 CGGVRAG-LQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKS 494 (647)
Q Consensus 436 ~GGi~vD-~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~ 494 (647)
.|.|.+| ++++|++||+||+||++ +|. ..+..|+-.|+.||.++.+++..
T Consensus 416 ~g~i~vd~~~~~Ts~~gVfa~GD~~-~g~--------~~~~~Av~~G~~AA~~i~~~L~g 466 (471)
T PRK12810 416 RGRVAAPDNAYQTSNPKVFAAGDMR-RGQ--------SLVVWAIAEGRQAARAIDAYLMG 466 (471)
T ss_pred CCCEEeCCCcccCCCCCEEEccccC-CCc--------hhHHHHHHHHHHHHHHHHHHHhc
Confidence 4779998 78999999999999998 321 23567888999999999998854
No 138
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=99.10 E-value=6.2e-08 Score=100.60 Aligned_cols=60 Identities=17% Similarity=0.092 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006387 213 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 213 g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 282 (647)
-..+++.+.+.+.+. |++++++|+|.+++.++ + .+.+|.. .+|+ .|.|+.||+|.|-.++
T Consensus 172 l~~vvkni~~~l~~~-G~ei~f~t~VeDi~~~~-~---~~~~v~~---~~g~--~i~~~~vvlA~Grsg~ 231 (486)
T COG2509 172 LPKVVKNIREYLESL-GGEIRFNTEVEDIEIED-N---EVLGVKL---TKGE--EIEADYVVLAPGRSGR 231 (486)
T ss_pred hHHHHHHHHHHHHhc-CcEEEeeeEEEEEEecC-C---ceEEEEc---cCCc--EEecCEEEEccCcchH
Confidence 356778888889885 99999999999999874 3 3556654 3454 5999999999995553
No 139
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.09 E-value=4.7e-09 Score=115.32 Aligned_cols=66 Identities=18% Similarity=0.208 Sum_probs=50.1
Q ss_pred chHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006387 212 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 212 ~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 282 (647)
....+..+|.+.+.+. |++++++++|+++..++++ .+ .+.+.++.+|+..+++|+.||+|+|+++.
T Consensus 176 dp~~l~~aL~~~a~~~-Gv~i~~~t~V~~i~~~~~~---~v-~v~~~~~~~g~~~~i~A~~VV~AAG~~s~ 241 (483)
T TIGR01320 176 DFGALTKQLLGYLVQN-GTTIRFGHEVRNLKRQSDG---SW-TVTVKNTRTGGKRTLNTRFVFVGAGGGAL 241 (483)
T ss_pred CHHHHHHHHHHHHHhC-CCEEEeCCEEEEEEEcCCC---eE-EEEEeeccCCceEEEECCEEEECCCcchH
Confidence 4678899999999875 9999999999999875343 22 23443444555456999999999998874
No 140
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.09 E-value=5.3e-10 Score=129.99 Aligned_cols=50 Identities=20% Similarity=0.249 Sum_probs=36.6
Q ss_pred cCceEECCCCCcccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHH
Q 006387 436 CGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSID 490 (647)
Q Consensus 436 ~GGi~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~ 490 (647)
.|||.||++++|++|++||+|||+ +.++. +-| ....|.-.|+.|+++++.
T Consensus 260 ~G~I~VD~~l~Ts~p~IYAiGD~a--~~~~~--~~g-l~~~a~~~a~vaa~~i~g 309 (847)
T PRK14989 260 RGGIVINDSCQTSDPDIYAIGECA--SWNNR--VFG-LVAPGYKMAQVAVDHLLG 309 (847)
T ss_pred CCcEEECCCCcCCCCCEEEeecce--eEcCc--ccc-cHHHHHHHHHHHHHHhcC
Confidence 589999999999999999999998 33221 111 234566777888777654
No 141
>PRK06126 hypothetical protein; Provisional
Probab=99.09 E-value=3.6e-09 Score=118.98 Aligned_cols=65 Identities=15% Similarity=0.213 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006387 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 283 (647)
..+...|.+.+.+.++++++.++.++++..+++ .|. +.+.+..+|+..+++|+.||.|+|..+.+
T Consensus 126 ~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~----~v~-v~~~~~~~g~~~~i~ad~vVgADG~~S~V 190 (545)
T PRK06126 126 KYLEPILLEHAAAQPGVTLRYGHRLTDFEQDAD----GVT-ATVEDLDGGESLTIRADYLVGCDGARSAV 190 (545)
T ss_pred HHHHHHHHHHHHhCCCceEEeccEEEEEEECCC----eEE-EEEEECCCCcEEEEEEEEEEecCCcchHH
Confidence 346667777877667999999999999987643 354 45556567777789999999999988753
No 142
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.09 E-value=8.6e-09 Score=118.05 Aligned_cols=39 Identities=28% Similarity=0.354 Sum_probs=34.9
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCC
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESN 125 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~ 125 (647)
...+|+|||||+|||+||..|++.| +|+|+|+....+|.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~ 365 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGL 365 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCce
Confidence 3579999999999999999999999 99999998776553
No 143
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.09 E-value=2.2e-09 Score=116.70 Aligned_cols=60 Identities=15% Similarity=0.088 Sum_probs=45.8
Q ss_pred chHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006387 212 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 212 ~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 282 (647)
....++..|.+.+.+ .|++|+++++|+++..+ ++ ++.++.. .++ .++|+.||+|+|.++.
T Consensus 199 ~p~~~~~~l~~~~~~-~G~~i~~~~~V~~i~~~-~~---~~~~v~t---~~~---~~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 199 DCQLFTQRLAAMAEQ-LGVKFRFNTPVDGLLVE-GG---RITGVQT---GGG---VITADAYVVALGSYST 258 (416)
T ss_pred CHHHHHHHHHHHHHH-CCCEEEcCCEEEEEEec-CC---EEEEEEe---CCc---EEeCCEEEECCCcchH
Confidence 456788888888877 59999999999999875 33 4555543 333 5899999999998763
No 144
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.08 E-value=3.7e-09 Score=113.30 Aligned_cols=49 Identities=18% Similarity=0.222 Sum_probs=35.8
Q ss_pred CceEECCCCCcccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHH
Q 006387 437 GGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSID 490 (647)
Q Consensus 437 GGi~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~ 490 (647)
+||.||++++|++|++||+|||+ .+.|. .++ .+..|...|+.||++++.
T Consensus 253 ~gi~vd~~l~ts~~~VyA~GD~a--~~~~~-~~~--~~~~a~~~g~~~a~n~~g 301 (377)
T PRK04965 253 RGIVVDSYLQTSAPDIYALGDCA--EINGQ-VLP--FLQPIQLSAMALAKNLLG 301 (377)
T ss_pred CCEEECCCcccCCCCEEEeeecE--eECCc-eee--hHHHHHHHHHHHHHHhcC
Confidence 57999999999999999999997 33332 111 244567778888877654
No 145
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.08 E-value=2.2e-09 Score=113.52 Aligned_cols=183 Identities=20% Similarity=0.158 Sum_probs=101.1
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC---CeEEEEecCCCC-CCccccCCCeeeecCCCCCHHHHHHHHHHhcccC-----
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG---TVAVITKAEPHE-SNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYL----- 157 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G---~V~llEk~~~~~-G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~----- 157 (647)
..+||+|||||+.|+++|+.|++.+ +|+||||....+ .+|..+.|-+.+... .++...-.+....|...
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~--y~p~slka~l~~~g~~~~~~~~ 79 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLY--YTPGSLKAKLCVAGNINEFAIC 79 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceecccc--CCCcchhhHHHHHHHHHHHHHH
Confidence 3689999999999999999999987 899999987654 344444443332221 11111111111111100
Q ss_pred --------CCHHHHHH----HHHHhHHHHHHHHHcCCC-cccCCCCCcccccc-----CCccccceeeccCCchHHHHHH
Q 006387 158 --------CDDETVRV----VCTEGPDRIRELIAIGAS-FDRGEDGNLHLARE-----GGHSHHRIVHAADMTGREIERA 219 (647)
Q Consensus 158 --------~~~~~~~~----~~~~~~~~i~~l~~~Gv~-~~~~~~g~~~~~~~-----gg~~~~r~~~~~~~~g~~~~~~ 219 (647)
..+.++-. -.+.-....+.+.+.|+. +.. .|..-....+ +....-+.-..+......+..+
T Consensus 80 kq~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~-ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~ 158 (429)
T COG0579 80 KQLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEI-LDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRA 158 (429)
T ss_pred HHhCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceee-cCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHH
Confidence 00000000 011112223333445555 111 0000000000 0000000001123345678899
Q ss_pred HHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccc
Q 006387 220 LLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 220 L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 281 (647)
|.+.+.++ |+++..+++|+++..+++| +.+.++.+|+.. |+||.||+|.|+++
T Consensus 159 l~e~a~~~-g~~i~ln~eV~~i~~~~dg-------~~~~~~~~g~~~-~~ak~Vin~AGl~A 211 (429)
T COG0579 159 LAEEAQAN-GVELRLNTEVTGIEKQSDG-------VFVLNTSNGEET-LEAKFVINAAGLYA 211 (429)
T ss_pred HHHHHHHc-CCEEEecCeeeEEEEeCCc-------eEEEEecCCcEE-EEeeEEEECCchhH
Confidence 99999986 9999999999999987543 455566777765 99999999999876
No 146
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.08 E-value=5.9e-10 Score=122.41 Aligned_cols=50 Identities=20% Similarity=0.333 Sum_probs=41.2
Q ss_pred cCceEECC-CCCcccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhc
Q 006387 436 CGGVRAGL-QGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKS 494 (647)
Q Consensus 436 ~GGi~vD~-~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~ 494 (647)
.|+|.||. .++|++||+||+||++ +|. .....|+..|+.||.++..++.+
T Consensus 403 ~g~i~vd~~~~~Ts~~~VfA~GD~~-~~~--------~~~~~A~~~G~~aA~~I~~~l~g 453 (457)
T PRK11749 403 WGTIIADDETGRTSLPGVFAGGDIV-TGA--------ATVVWAVGDGKDAAEAIHEYLEG 453 (457)
T ss_pred CCCEEeCCCCCccCCCCEEEeCCcC-CCc--------hHHHHHHHHHHHHHHHHHHHHhc
Confidence 47899998 7899999999999997 321 24567888999999999988754
No 147
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.07 E-value=6.2e-09 Score=113.39 Aligned_cols=37 Identities=35% Similarity=0.478 Sum_probs=33.5
Q ss_pred CccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCC
Q 006387 85 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 85 ~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~ 121 (647)
+...|||+||||||||++||+.|++.| +|+|+||...
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~ 73 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD 73 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 345799999999999999999999999 9999999753
No 148
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.06 E-value=1.6e-09 Score=117.74 Aligned_cols=157 Identities=22% Similarity=0.308 Sum_probs=84.6
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHHHH
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 165 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~ 165 (647)
..|||||||||+||++||+.|+++| +|+||||...++.... .||.... ...+..+.+..
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~--~gg~l~~----~~~e~l~~~~~-------------- 63 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNV--TGGRLYA----HSLEHIIPGFA-------------- 63 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCccc--ccceech----hhHHHHhhhhh--------------
Confidence 3599999999999999999999999 9999999877654321 2333211 11111111100
Q ss_pred HHHHhHHHHHHH-HHcCCCcccCCCCCccccccCCc--cccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEE
Q 006387 166 VCTEGPDRIREL-IAIGASFDRGEDGNLHLAREGGH--SHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLL 242 (647)
Q Consensus 166 ~~~~~~~~i~~l-~~~Gv~~~~~~~g~~~~~~~gg~--~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~ 242 (647)
...+ ++.. ....+.|. ..++.......... ......+ ......+...|.+.+.+ .|++++.++.|+++.
T Consensus 64 --~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~v~R~~fD~~L~~~a~~-~Gv~i~~~~~V~~i~ 135 (428)
T PRK10157 64 --DSAP--VERLITHEKLAFM-TEKSAMTMDYCNGDETSPSQRSY--SVLRSKFDAWLMEQAEE-AGAQLITGIRVDNLV 135 (428)
T ss_pred --hcCc--ccceeeeeeEEEE-cCCCceeeccccccccCCCCCce--eeEHHHHHHHHHHHHHH-CCCEEECCCEEEEEE
Confidence 0000 0000 00000010 01111100000000 0000000 01124566778888877 599999999999998
Q ss_pred ecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccc
Q 006387 243 TTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 243 ~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 281 (647)
.+ ++ ++.++. .+|+ .+.|+.||+|+|..+
T Consensus 136 ~~-~g---~v~~v~----~~g~--~i~A~~VI~A~G~~s 164 (428)
T PRK10157 136 QR-DG---KVVGVE----ADGD--VIEAKTVILADGVNS 164 (428)
T ss_pred Ee-CC---EEEEEE----cCCc--EEECCEEEEEeCCCH
Confidence 76 44 555543 1343 589999999999654
No 149
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.06 E-value=4.3e-09 Score=115.74 Aligned_cols=67 Identities=19% Similarity=0.212 Sum_probs=49.4
Q ss_pred chHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006387 212 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 212 ~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 282 (647)
....+..+|.+.+.+..|++++++++|+++..++++ .+ .+.+.++.+|+..+|+|+.||+|+|+++.
T Consensus 181 d~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg---~~-~v~~~~~~~G~~~~i~A~~VVvaAGg~s~ 247 (494)
T PRK05257 181 NFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDG---SW-TVTVKDLKTGEKRTVRAKFVFIGAGGGAL 247 (494)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCC---CE-EEEEEEcCCCceEEEEcCEEEECCCcchH
Confidence 456788999999887545999999999999876444 33 24443334564446899999999998874
No 150
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.05 E-value=3.9e-09 Score=113.77 Aligned_cols=175 Identities=17% Similarity=0.200 Sum_probs=93.2
Q ss_pred ccCEEEECcchHHHHHHHHHHhc--C-CeEEEEecCC-CCCCccccCCCeeeecC-CCCC-HHHH-------HHHHHHh-
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEP-HESNTNYAQGGVSAVLC-PSDS-VESH-------MQDTIVA- 153 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~--G-~V~llEk~~~-~~G~t~~a~Ggi~~~~~-~~d~-~~~~-------~~~~~~~- 153 (647)
.+||+|||||++|+++|++|+++ | +|+|+||... ..++|..+.|.+..... ..++ ...+ +.+....
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 81 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCDQH 81 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccccccccCcceEccccccCcHHHHHHHHHHHHHHHHHHHHHc
Confidence 48999999999999999999998 9 9999999864 44555544443322111 1111 0010 1111110
Q ss_pred cc-c-------C-CCHHHHHHHHHHhHHHHHHHHHcCCCcccCCCCCc-----cccccCCccccceeeccCCchHHHHHH
Q 006387 154 GA-Y-------L-CDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNL-----HLAREGGHSHHRIVHAADMTGREIERA 219 (647)
Q Consensus 154 g~-~-------~-~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~-----~~~~~gg~~~~r~~~~~~~~g~~~~~~ 219 (647)
+. + + .+++.. +......+++.+.|+++..-....+ .+...++...+.. +......+...
T Consensus 82 ~~~~~~~G~l~~~~~~~~~----~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~al~~p~~---g~vd~~~l~~a 154 (393)
T PRK11728 82 GIPYEECGKLLVATSELEL----ERMEALYERARANGIEVERLDAEELREREPNIRGLGAIFVPST---GIVDYRAVAEA 154 (393)
T ss_pred CCCcccCCEEEEEcCHHHH----HHHHHHHHHHHHCCCcEEEeCHHHHHHhCCCccccceEEcCCc---eEECHHHHHHH
Confidence 00 0 0 011111 1111222334445554321000000 0000011111100 11135678889
Q ss_pred HHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccc
Q 006387 220 LLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 220 L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 281 (647)
|.+.+.+ .|++++.++.|+++..+ ++ .+ .|.. .+| .+.|+.||+|+|.++
T Consensus 155 L~~~~~~-~Gv~i~~~~~V~~i~~~-~~---~~-~V~~---~~g---~i~ad~vV~A~G~~s 204 (393)
T PRK11728 155 MAELIQA-RGGEIRLGAEVTALDEH-AN---GV-VVRT---TQG---EYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHh-CCCEEEcCCEEEEEEec-CC---eE-EEEE---CCC---EEEeCEEEECCCcch
Confidence 9999887 49999999999998765 33 23 3322 334 589999999999876
No 151
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.04 E-value=8e-10 Score=128.53 Aligned_cols=38 Identities=34% Similarity=0.460 Sum_probs=34.1
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCC
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES 124 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G 124 (647)
...||+|||||+||++||+.|++.| +|+|+|+.+..+|
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG 574 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGG 574 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCc
Confidence 3579999999999999999999999 9999999876543
No 152
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=2.4e-09 Score=100.14 Aligned_cols=120 Identities=15% Similarity=0.165 Sum_probs=78.5
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHHH
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR 164 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~ 164 (647)
.....|+|||+|||+..||++|++.- |.+|+|-....+ .+.||.......-+
T Consensus 6 ~h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~----i~pGGQLtTTT~ve----------------------- 58 (322)
T KOG0404|consen 6 THNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANG----IAPGGQLTTTTDVE----------------------- 58 (322)
T ss_pred eeeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccC----cCCCceeeeeeccc-----------------------
Confidence 34568999999999999999999999 999999654311 12233221110000
Q ss_pred HHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEec
Q 006387 165 VVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT 244 (647)
Q Consensus 165 ~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~ 244 (647)
.|.- ++...+|..++..+.++..+. |.+|+..+ |.++..+
T Consensus 59 ------------------NfPG--------------------FPdgi~G~~l~d~mrkqs~r~-Gt~i~tEt-Vskv~~s 98 (322)
T KOG0404|consen 59 ------------------NFPG--------------------FPDGITGPELMDKMRKQSERF-GTEIITET-VSKVDLS 98 (322)
T ss_pred ------------------cCCC--------------------CCcccccHHHHHHHHHHHHhh-cceeeeee-hhhcccc
Confidence 0111 122346788999999999875 99999884 6777654
Q ss_pred CCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006387 245 LDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 245 ~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 283 (647)
. ++.-++. +.+ .++|++||+|||...+-
T Consensus 99 s-----kpF~l~t---d~~---~v~~~avI~atGAsAkR 126 (322)
T KOG0404|consen 99 S-----KPFKLWT---DAR---PVTADAVILATGASAKR 126 (322)
T ss_pred C-----CCeEEEe---cCC---ceeeeeEEEecccceee
Confidence 2 3433332 222 58999999999987753
No 153
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.04 E-value=3.2e-09 Score=113.30 Aligned_cols=46 Identities=28% Similarity=0.532 Sum_probs=40.6
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCee
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVS 134 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~ 134 (647)
+||+|||||++|+++|++|++.| +|+|||+.....|+|..+.|.+.
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~~~gaS~~~~G~~~ 47 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRAQGASVRNFGQVW 47 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcccccCceEE
Confidence 69999999999999999999999 99999999887777777665554
No 154
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.04 E-value=2.5e-09 Score=114.74 Aligned_cols=180 Identities=16% Similarity=0.154 Sum_probs=91.5
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCC-CCccccCCCeeeecCCCCCHHH-------HHHHHHHh-cccCC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHE-SNTNYAQGGVSAVLCPSDSVES-------HMQDTIVA-GAYLC 158 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~-G~t~~a~Ggi~~~~~~~d~~~~-------~~~~~~~~-g~~~~ 158 (647)
|||+|||||++|+++|++|+++| +|+|||+....+ +.+....+++.......+.... ++.++.+. +....
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~~~~~ss~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~ 80 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHSRGSSHGQSRIIRKAYPEDFYTPMMLECYQLWAQLEKEAGTKLH 80 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCCCCCCCCeeeeeccCchhHhHHHHHHHHHHHHHHHHhCCeeE
Confidence 69999999999999999999999 999999987542 2222222233221111111111 11111111 10000
Q ss_pred CHHHHHHHH----HHhHHHHHHHHHcCCCcccCCCCCccccccCCcc---ccceee-cc--CCchHHHHHHHHHHHHcCC
Q 006387 159 DDETVRVVC----TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHS---HHRIVH-AA--DMTGREIERALLEAVVSDP 228 (647)
Q Consensus 159 ~~~~~~~~~----~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~---~~r~~~-~~--~~~g~~~~~~L~~~~~~~~ 228 (647)
.+.-...+. +...+..+.+.+.|++........+. ..+.... ....++ .. -.....+...|.+.+.+ .
T Consensus 81 ~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~-~~~P~l~~~~~~~~~~~~~~g~i~p~~~~~~l~~~~~~-~ 158 (380)
T TIGR01377 81 RQTGLLLLGPKENQFLKTIQATLSRHGLEHELLSSKQLK-QRFPNIRVPRNEVGLLDPNGGVLYAEKALRALQELAEA-H 158 (380)
T ss_pred eecCeEEEcCCCcHHHHHHHHHHHHcCCCeEEcCHHHHH-HhCCCCcCCCCceEEEcCCCcEEcHHHHHHHHHHHHHH-c
Confidence 000000000 11122334455566553211000000 0000000 000111 11 11345677888888877 4
Q ss_pred CcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccc
Q 006387 229 NISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 229 gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 281 (647)
|++++.+++|+++..+ ++ .+ .+.. .++ .|.|+.||+|+|++.
T Consensus 159 g~~~~~~~~V~~i~~~-~~---~~-~v~~---~~~---~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 159 GATVRDGTKVVEIEPT-EL---LV-TVKT---TKG---SYQANKLVVTAGAWT 200 (380)
T ss_pred CCEEECCCeEEEEEec-CC---eE-EEEe---CCC---EEEeCEEEEecCcch
Confidence 9999999999999875 33 23 2332 334 589999999999875
No 155
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.02 E-value=8.4e-09 Score=112.08 Aligned_cols=159 Identities=17% Similarity=0.191 Sum_probs=86.4
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHHH
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR 164 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~ 164 (647)
...+||+|||||+||+++|+.|++.| +|+|+||.+...-.. .+.++... +..++
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~--~g~~~~l~-----------------------~~~~~ 70 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAA--KGQAYALS-----------------------LLSAR 70 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCC--CCcEEEec-----------------------hHHHH
Confidence 45799999999999999999999999 999999987532110 01112110 00000
Q ss_pred HHHHHhHHHHHHHHHcCCCccc----CCCCC--ccccc--cCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcce
Q 006387 165 VVCTEGPDRIRELIAIGASFDR----GEDGN--LHLAR--EGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHH 236 (647)
Q Consensus 165 ~~~~~~~~~i~~l~~~Gv~~~~----~~~g~--~~~~~--~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~ 236 (647)
.+.+- ...+.+...+.++.. +..+. ..+.. ....... +.. ....+.+.|.+.+.+.++++++.++
T Consensus 71 ~L~~l--Gl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~l~~~L~~~~~~~~~v~i~~~~ 143 (415)
T PRK07364 71 IFEGI--GVWEKILPQIGKFRQIRLSDADYPGVVKFQPTDLGTEALG---YVG--EHQVLLEALQEFLQSCPNITWLCPA 143 (415)
T ss_pred HHHHC--ChhhhhHhhcCCccEEEEEeCCCCceeeeccccCCCCccE---EEE--ecHHHHHHHHHHHhcCCCcEEEcCC
Confidence 00000 001112222222210 01110 00000 0000000 000 1134677788888776689999999
Q ss_pred EEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006387 237 FAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 237 ~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 283 (647)
+++++..++++ + .|.+. .+++..+++||.||.|+|..+.+
T Consensus 144 ~v~~v~~~~~~----~-~v~~~--~~~~~~~i~adlvIgADG~~S~v 183 (415)
T PRK07364 144 EVVSVEYQQDA----A-TVTLE--IEGKQQTLQSKLVVAADGARSPI 183 (415)
T ss_pred eeEEEEecCCe----e-EEEEc--cCCcceEEeeeEEEEeCCCCchh
Confidence 99999766332 2 23332 23443579999999999987743
No 156
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.01 E-value=8.9e-10 Score=129.34 Aligned_cols=50 Identities=18% Similarity=0.317 Sum_probs=40.8
Q ss_pred cCceEECC-CCCcccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhc
Q 006387 436 CGGVRAGL-QGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKS 494 (647)
Q Consensus 436 ~GGi~vD~-~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~ 494 (647)
.|.|.||+ .++|++||+||+|||+ .| .....+|+-.|+.||.++.+|+.-
T Consensus 578 ~G~I~vd~~~~~Ts~pgVFAaGD~~-~G--------~~~vv~Ai~eGr~AA~~I~~~L~~ 628 (944)
T PRK12779 578 WGTIEVEKGSQRTSIKGVYSGGDAA-RG--------GSTAIRAAGDGQAAAKEIVGEIPF 628 (944)
T ss_pred CCCEEECCCCCccCCCCEEEEEcCC-CC--------hHHHHHHHHHHHHHHHHHHHHhcc
Confidence 47789996 4789999999999997 32 235678999999999999988753
No 157
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.01 E-value=4.3e-09 Score=112.72 Aligned_cols=179 Identities=11% Similarity=0.056 Sum_probs=91.7
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCC--CCccccCCCeeeecCCCCCH-------HHHHHHHHHh-cc-
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHE--SNTNYAQGGVSAVLCPSDSV-------ESHMQDTIVA-GA- 155 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~--G~t~~a~Ggi~~~~~~~d~~-------~~~~~~~~~~-g~- 155 (647)
++||+|||||++|+++|++|+++| +|+|||++...+ +++..+.+.+.......... ...+.+..+. +.
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~ 82 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPPHQQGSSHGDTRIIRHAYGEGPAYVPLVLRAQELWRELERESGEP 82 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCCCCCcCcCCcceEEEeeccCCchhhHHHHHHHHHHHHHHHHhCCc
Confidence 589999999999999999999999 999999987653 22221111111111111111 0111121111 00
Q ss_pred -------cCCCHHHHHHHHHHhHHHHHHHHHcCCCcccCCCCCcc-c-cccCCccccceee-cc--CCchHHHHHHHHHH
Q 006387 156 -------YLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLH-L-AREGGHSHHRIVH-AA--DMTGREIERALLEA 223 (647)
Q Consensus 156 -------~~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~-~-~~~gg~~~~r~~~-~~--~~~g~~~~~~L~~~ 223 (647)
.....+. .+......+.+++.|++........+. . ...........++ +. -.....++..+.+.
T Consensus 83 ~~~~~G~l~~~~~~----~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~P~l~~~~~~~a~~~~~~g~v~p~~~~~~~~~~ 158 (376)
T PRK11259 83 LFVRTGVLNLGPAD----SDFLANSIRSARQHGLPHEVLDAAEIRRRFPQFRLPDGYIALFEPDGGFLRPELAIKAHLRL 158 (376)
T ss_pred cEEEECCEEEcCCC----CHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCCcCCCCceEEEcCCCCEEcHHHHHHHHHHH
Confidence 0000000 001112334455566543210000000 0 0000000000111 11 12345677778877
Q ss_pred HHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006387 224 VVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 224 ~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 282 (647)
+.+ .|++++.++.|+++..+ ++ .+ .+. +.+| .++|+.||+|+|++..
T Consensus 159 ~~~-~gv~i~~~~~v~~i~~~-~~---~~-~v~---~~~g---~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 159 ARE-AGAELLFNEPVTAIEAD-GD---GV-TVT---TADG---TYEAKKLVVSAGAWVK 205 (376)
T ss_pred HHH-CCCEEECCCEEEEEEee-CC---eE-EEE---eCCC---EEEeeEEEEecCcchh
Confidence 776 49999999999999875 33 22 232 2345 5899999999998753
No 158
>PLN02463 lycopene beta cyclase
Probab=99.00 E-value=3.5e-08 Score=107.04 Aligned_cols=35 Identities=34% Similarity=0.577 Sum_probs=32.3
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
...+||+|||||+||+++|+.|++.| +|+|||+.+
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~ 61 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP 61 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence 44699999999999999999999999 999999865
No 159
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.00 E-value=1e-09 Score=129.90 Aligned_cols=51 Identities=24% Similarity=0.356 Sum_probs=41.8
Q ss_pred cCceEECC-----CCCcccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhcc
Q 006387 436 CGGVRAGL-----QGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKST 495 (647)
Q Consensus 436 ~GGi~vD~-----~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~ 495 (647)
.|.|.+|. .++|++||+||+||++ +|. ..+..|+..|++||.++.+|+...
T Consensus 702 ~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~-~G~--------~~vv~Ai~~Gr~AA~~I~~~L~~~ 757 (1006)
T PRK12775 702 WGNIAADDGKLESTQSTNLPGVFAGGDIV-TGG--------ATVILAMGAGRRAARSIATYLRLG 757 (1006)
T ss_pred CCcEEeCCCccccCcCCCCCCEEEecCcC-CCc--------cHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46688886 6899999999999997 332 246789999999999999998654
No 160
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.99 E-value=1.7e-09 Score=123.43 Aligned_cols=52 Identities=21% Similarity=0.303 Sum_probs=42.1
Q ss_pred cCceEECC-CCCcccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhccc
Q 006387 436 CGGVRAGL-QGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTS 496 (647)
Q Consensus 436 ~GGi~vD~-~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~~ 496 (647)
.|.|.||+ .++|++||+||+||++ +|. .....|+-.|++||.++.+|+....
T Consensus 452 ~G~I~vd~~~~~Ts~pgVfA~GDv~-~g~--------~~v~~Ai~~G~~AA~~I~~~L~g~~ 504 (652)
T PRK12814 452 NGTVKVDPETLQTSVAGVFAGGDCV-TGA--------DIAINAVEQGKRAAHAIDLFLNGKP 504 (652)
T ss_pred CCcEeeCCCCCcCCCCCEEEcCCcC-CCc--------hHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 47799997 5789999999999997 332 2457788899999999999987543
No 161
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.99 E-value=1.7e-08 Score=116.03 Aligned_cols=50 Identities=32% Similarity=0.553 Sum_probs=41.3
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC-CeEEEEecC-CCCCCccccCCCeeeec
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE-PHESNTNYAQGGVSAVL 137 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~-~~~G~t~~a~Ggi~~~~ 137 (647)
.+||+|||||++|+++|++|+++| +|+|+|+.. ...|+|..+.|.+....
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~~~gaSg~~~G~l~~~~ 311 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQGASGNRQGALYPLL 311 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCccccCCcCccccccccc
Confidence 479999999999999999999999 999999985 55667766665554443
No 162
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.98 E-value=2.4e-09 Score=124.53 Aligned_cols=49 Identities=16% Similarity=0.319 Sum_probs=41.3
Q ss_pred cCceEECCCCCcccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhh
Q 006387 436 CGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 493 (647)
Q Consensus 436 ~GGi~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~ 493 (647)
.|.|.||++++|++||+||+||++ .| ...+..|+-.|++||.++.+|+.
T Consensus 702 ~G~i~vd~~~~Ts~~gVfA~GD~~-~g--------~~~vv~Av~~G~~AA~~I~~~L~ 750 (752)
T PRK12778 702 KGTIVVDEEMQSSIPGIYAGGDIV-RG--------GATVILAMGDGKRAAAAIDEYLS 750 (752)
T ss_pred CCCEEeCCCCCCCCCCEEEeCCcc-CC--------cHHHHHHHHHHHHHHHHHHHHhc
Confidence 477999999999999999999997 33 23467889999999999998874
No 163
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.98 E-value=3.6e-09 Score=112.15 Aligned_cols=48 Identities=25% Similarity=0.298 Sum_probs=39.4
Q ss_pred cCceEECCCCCcccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhh
Q 006387 436 CGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHK 492 (647)
Q Consensus 436 ~GGi~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~ 492 (647)
.|.|.||++.+|++||+||+|||+ ++. ..+..|+..|+.|+.++.+++
T Consensus 302 ~g~i~vd~~~~t~~~~vyaiGD~~-~~~--------~~~~~A~~~g~~aa~~i~~~l 349 (352)
T PRK12770 302 KGEIVVDEKHMTSREGVFAAGDVV-TGP--------SKIGKAIKSGLRAAQSIHEWL 349 (352)
T ss_pred CCcEeeCCCcccCCCCEEEEcccc-cCc--------chHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999997 332 135678888999999988876
No 164
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.97 E-value=1.8e-08 Score=110.07 Aligned_cols=67 Identities=24% Similarity=0.275 Sum_probs=48.2
Q ss_pred chHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006387 212 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 212 ~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 282 (647)
....+.++|.+.+.+..|+++++++.|+++..++++ .+. +.+.++.+++..+++|+.||+|+|+++.
T Consensus 182 D~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~---~w~-v~v~~t~~g~~~~i~Ad~VV~AAGawS~ 248 (497)
T PRK13339 182 NFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDG---GWE-VTVKDRNTGEKREQVADYVFIGAGGGAI 248 (497)
T ss_pred CHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCC---CEE-EEEEecCCCceEEEEcCEEEECCCcchH
Confidence 456788899888865569999999999999875333 232 3333334453335899999999998874
No 165
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.95 E-value=5.1e-09 Score=107.95 Aligned_cols=148 Identities=18% Similarity=0.187 Sum_probs=81.4
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHHHHHH
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 167 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~ 167 (647)
|||+|||||+||+++|+.|++.| +|+|+||....+. ....+++.. ...+ .+. .. ..
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~--~~~~~~~~~-----~~~~-----~l~---~~-~~------- 57 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY--KPCGGALSP-----RVLE-----ELD---LP-LE------- 57 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc--ccccCccCH-----hHHH-----Hhc---CC-ch-------
Confidence 69999999999999999999999 9999999876532 111122210 0000 000 00 00
Q ss_pred HHhHHHHHHHHHcCCCcccCCCCCc-cccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCC
Q 006387 168 TEGPDRIRELIAIGASFDRGEDGNL-HLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLD 246 (647)
Q Consensus 168 ~~~~~~i~~l~~~Gv~~~~~~~g~~-~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~ 246 (647)
...... ....+. ..++.. ...... +... ......+...|.+.+.+ .|++++.+++++++..+++
T Consensus 58 ----~~~~~~--~~~~~~-~~~~~~~~~~~~~----~~~~---~i~r~~l~~~l~~~~~~-~gv~~~~~~~v~~~~~~~~ 122 (295)
T TIGR02032 58 ----LIVNLV--RGARFF-SPNGDSVEIPIET----ELAY---VIDRDAFDEQLAERAQE-AGAELRLGTTVLDVEIHDD 122 (295)
T ss_pred ----hhhhhe--eeEEEE-cCCCcEEEeccCC----CcEE---EEEHHHHHHHHHHHHHH-cCCEEEeCcEEeeEEEeCC
Confidence 000000 000110 011110 000000 0000 01234677788888876 5999999999999987633
Q ss_pred CCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006387 247 GPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 247 g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 283 (647)
.+ .+.+ .++ ..+++|+.||+|+|..+.+
T Consensus 123 ----~~-~~~~---~~~-~~~~~a~~vv~a~G~~s~~ 150 (295)
T TIGR02032 123 ----RV-VVIV---RGG-EGTVTAKIVIGADGSRSIV 150 (295)
T ss_pred ----EE-EEEE---cCc-cEEEEeCEEEECCCcchHH
Confidence 22 1222 122 2368999999999987643
No 166
>PRK06185 hypothetical protein; Provisional
Probab=98.94 E-value=1.4e-08 Score=109.95 Aligned_cols=64 Identities=16% Similarity=0.160 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006387 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 283 (647)
..+...|.+.+.+.+|++++.++.++++..+ ++ .+.++.+.. .+|+ .+++|+.||.|+|+.+.+
T Consensus 108 ~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~---~v~~v~~~~-~~g~-~~i~a~~vI~AdG~~S~v 171 (407)
T PRK06185 108 WDFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GG---RVTGVRART-PDGP-GEIRADLVVGADGRHSRV 171 (407)
T ss_pred HHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CC---EEEEEEEEc-CCCc-EEEEeCEEEECCCCchHH
Confidence 4567788888876679999999999999876 44 577776643 3343 469999999999988753
No 167
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.94 E-value=1.4e-08 Score=109.21 Aligned_cols=182 Identities=20% Similarity=0.190 Sum_probs=100.8
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecCCCC-C---------HHHHHHHHHHhcc
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSD-S---------VESHMQDTIVAGA 155 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d-~---------~~~~~~~~~~~g~ 155 (647)
.++||+|||||++|+++|++|++.| +|+|+|+.....|+|..+.+++........ + ...++.+......
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGAAGRNAGGILAPWASPGGELEVRPLADLSLALWRELSEELG 82 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCCcchhcchhhhccccccCCccchhhhhhHHHHHHHHHHHHHhC
Confidence 4689999999999999999999999 999999999888888888777765543311 1 0111111111110
Q ss_pred ---cCCCHHHHHHHHH-------HhHHHHHHHHHcCCCc---ccCC----CCCcccc-ccCCccccceeeccCCchHHHH
Q 006387 156 ---YLCDDETVRVVCT-------EGPDRIRELIAIGASF---DRGE----DGNLHLA-REGGHSHHRIVHAADMTGREIE 217 (647)
Q Consensus 156 ---~~~~~~~~~~~~~-------~~~~~i~~l~~~Gv~~---~~~~----~g~~~~~-~~gg~~~~r~~~~~~~~g~~~~ 217 (647)
.+.....+..... ......+.++...... .... ...+... ..++...+ .........++
T Consensus 83 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~a~~~~---~~~~~~p~~~~ 159 (387)
T COG0665 83 TGAGLRRRGLLDLAAREGLKGLAQLERLAAELEAAGEDAELLDAAEAAELEPALGPDFVCGGLFDP---TGGHLDPRLLT 159 (387)
T ss_pred cchhcchhhhhhhhhccccchHHHHHHHHHHHHhcCCCceeCCHHHHHHhCCCCCcccceeeEecC---CCCcCCHHHHH
Confidence 0111111111111 1122222333333321 0000 0000000 00111000 01222456788
Q ss_pred HHHHHHHHcCCC-cEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006387 218 RALLEAVVSDPN-ISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 218 ~~L~~~~~~~~g-v~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 283 (647)
..|.+.+.+. | ..+..++.++.+..+. + +.+|.. ..|+ |.|+.||+|||.++..
T Consensus 160 ~~l~~~~~~~-G~~~~~~~~~~~~~~~~~-~----~~~v~t---~~g~---i~a~~vv~a~G~~~~~ 214 (387)
T COG0665 160 RALAAAAEEL-GVVIIEGGTPVTSLERDG-R----VVGVET---DGGT---IEADKVVLAAGAWAGE 214 (387)
T ss_pred HHHHHHHHhc-CCeEEEccceEEEEEecC-c----EEEEEe---CCcc---EEeCEEEEcCchHHHH
Confidence 9999999885 6 6777788888887541 2 344433 3453 8999999999988643
No 168
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.93 E-value=1.8e-08 Score=117.23 Aligned_cols=49 Identities=18% Similarity=0.175 Sum_probs=36.2
Q ss_pred CceEECCCCCcccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHH
Q 006387 437 GGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSID 490 (647)
Q Consensus 437 GGi~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~ 490 (647)
|||.||+++||+.|++||+|||+ ...+ .+.+ ....+...|+.+|.++..
T Consensus 252 ggI~Vd~~~~Ts~p~IyA~GD~a--~~~~--~~~g-l~~~a~~qa~vaA~ni~g 300 (785)
T TIGR02374 252 RGIIVNDSMQTSDPDIYAVGECA--EHNG--RVYG-LVAPLYEQAKVLADHICG 300 (785)
T ss_pred CCEEECCCcccCCCCEEEeeecc--eeCC--cccc-cHHHHHHHHHHHHHHhcC
Confidence 89999999999999999999997 2322 1111 244566778888877754
No 169
>PLN02985 squalene monooxygenase
Probab=98.93 E-value=1.8e-08 Score=111.66 Aligned_cols=64 Identities=22% Similarity=0.288 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006387 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 283 (647)
..+...|.+++.+.+||++..+ .+++++.+ ++ .+.||.+.+ .+|+..++.|+.||.|.|.++.+
T Consensus 147 ~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~-~~---~v~gV~~~~-~dG~~~~~~AdLVVgADG~~S~v 210 (514)
T PLN02985 147 GRFVQRLRQKASSLPNVRLEEG-TVKSLIEE-KG---VIKGVTYKN-SAGEETTALAPLTVVCDGCYSNL 210 (514)
T ss_pred HHHHHHHHHHHHhCCCeEEEee-eEEEEEEc-CC---EEEEEEEEc-CCCCEEEEECCEEEECCCCchHH
Confidence 4678888888887778999866 57888765 44 678888754 35766678999999999998864
No 170
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.93 E-value=3.8e-09 Score=107.27 Aligned_cols=163 Identities=26% Similarity=0.335 Sum_probs=98.0
Q ss_pred ccccCEEEECcchHHHHHHHHHHh----cC---CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCC
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAK----HG---TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLC 158 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~----~G---~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~ 158 (647)
..++||+|||+|||||+||++|.+ .+ +|+|+||....||.+.. |.+ ..+ -...+++-++-..+..++
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlS--Gav---iep-~aldEL~P~wke~~apl~ 147 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLS--GAV---IEP-GALDELLPDWKEDGAPLN 147 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceec--cee---ecc-chhhhhCcchhhcCCccc
Confidence 567999999999999999999865 23 79999999988877632 211 111 112222222221222211
Q ss_pred CHHHHHHHHHHhHHHHHHHHH-cCCCc----ccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEE
Q 006387 159 DDETVRVVCTEGPDRIRELIA-IGASF----DRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVF 233 (647)
Q Consensus 159 ~~~~~~~~~~~~~~~i~~l~~-~Gv~~----~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~ 233 (647)
.+. ..+.+.+|.. +-+++ .-+..|.|. + .=..+++.|-+++++ .||+|+
T Consensus 148 t~v--------T~d~~~fLt~~~~i~vPv~~pm~NhGNYv------------v-----~L~~~v~wLg~kAEe-~GvEiy 201 (621)
T KOG2415|consen 148 TPV--------TSDKFKFLTGKGRISVPVPSPMDNHGNYV------------V-----SLGQLVRWLGEKAEE-LGVEIY 201 (621)
T ss_pred ccc--------cccceeeeccCceeecCCCcccccCCcEE------------E-----EHHHHHHHHHHHHHh-hCceec
Confidence 110 0011111111 00000 000111111 0 113578889999988 599999
Q ss_pred cceEEEEEEecCCCCCCeEEEEEEEecC---CCe-------EEEEEcCeEEECCCccccc
Q 006387 234 EHHFAIDLLTTLDGPDAVCHGVDTLNVE---TQE-------VVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 234 ~~~~v~~l~~~~~g~~~~v~Gv~~~~~~---~g~-------~~~i~Ak~VVlAtGg~~~~ 283 (647)
.+..+.+++.+++| .|.|+...|.. +|. -..|.|+..|+|-|..+.+
T Consensus 202 Pg~aaSevly~edg---sVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~L 258 (621)
T KOG2415|consen 202 PGFAASEVLYDEDG---SVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSL 258 (621)
T ss_pred cccchhheeEcCCC---cEeeEeeccccccCCCCccccccccceecceeEEEeccccchh
Confidence 99999999999888 89999876531 111 1469999999999988864
No 171
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.92 E-value=4.9e-08 Score=106.13 Aligned_cols=55 Identities=9% Similarity=-0.013 Sum_probs=39.5
Q ss_pred cCceEECCCCC-cccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhc
Q 006387 436 CGGVRAGLQGE-TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKS 494 (647)
Q Consensus 436 ~GGi~vD~~~~-T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~ 494 (647)
.|+|.||+++| |++||+||+|||+ .+.+. ........|.-.|..+|+++...+..
T Consensus 294 ~G~I~Vd~~l~~~~~~~IfAiGD~a--~~~~~--~~~~~~~~A~~qg~~~A~ni~~~l~g 349 (424)
T PTZ00318 294 RGRISVDDHLRVKPIPNVFALGDCA--ANEER--PLPTLAQVASQQGVYLAKEFNNELKG 349 (424)
T ss_pred CCcEEeCCCcccCCCCCEEEEeccc--cCCCC--CCCCchHHHHHHHHHHHHHHHHHhcC
Confidence 58999999998 6999999999998 22211 11122345677788888888877644
No 172
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.91 E-value=5.8e-09 Score=110.36 Aligned_cols=63 Identities=16% Similarity=0.091 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006387 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 282 (647)
..+.+.|.+.+++. +++++.++.++++..+.+ .+.. .+.+..+|+..+|+|+.||-|.|..+.
T Consensus 111 ~~l~~~L~~~~~~~-gv~i~~~~~v~~~~~d~~----~~~~-~~~~~~~g~~~~i~adlvVgADG~~S~ 173 (356)
T PF01494_consen 111 PELDRALREEAEER-GVDIRFGTRVVSIEQDDD----GVTV-VVRDGEDGEEETIEADLVVGADGAHSK 173 (356)
T ss_dssp HHHHHHHHHHHHHH-TEEEEESEEEEEEEEETT----EEEE-EEEETCTCEEEEEEESEEEE-SGTT-H
T ss_pred HHHHHhhhhhhhhh-hhhheeeeeccccccccc----cccc-ccccccCCceeEEEEeeeecccCcccc
Confidence 46778888888875 799999999999988744 3443 344556788788999999999997764
No 173
>PRK13984 putative oxidoreductase; Provisional
Probab=98.91 E-value=3.8e-09 Score=120.11 Aligned_cols=48 Identities=15% Similarity=0.225 Sum_probs=41.0
Q ss_pred cCceEECCCCCcccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhh
Q 006387 436 CGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 493 (647)
Q Consensus 436 ~GGi~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~ 493 (647)
.|.|.||++++|++||+||+||++ .+ .++..|+-.|+.||.++.+|+.
T Consensus 555 ~G~i~vd~~~~Ts~~gVfAaGD~~-~~---------~~~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 555 RGRILTNEYGQTSIPWLFAGGDIV-HG---------PDIIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred CCeEEeCCCCccCCCCEEEecCcC-Cc---------hHHHHHHHHHHHHHHHHHHHhc
Confidence 477999999999999999999997 22 2367789999999999988874
No 174
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.90 E-value=2.5e-09 Score=112.96 Aligned_cols=151 Identities=22% Similarity=0.207 Sum_probs=91.8
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCC--CccccCCCeeee--cCCCCCHHHHHHHHHHhcccCCCHHH
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES--NTNYAQGGVSAV--LCPSDSVESHMQDTIVAGAYLCDDET 162 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G--~t~~a~Ggi~~~--~~~~d~~~~~~~~~~~~g~~~~~~~~ 162 (647)
.|||+|||||-||+-||+.+|+.| +++|+.-..-.-| ++.-+-||+.-. ..+-|.. .+
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDAL-----------GG------ 66 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDAL-----------GG------ 66 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhc-----------cc------
Confidence 599999999999999999999999 9999987643222 222344555311 1010100 00
Q ss_pred HHHHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEE
Q 006387 163 VRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLL 242 (647)
Q Consensus 163 ~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~ 242 (647)
..-....+.|+.|.-.. ..+......+|. +.....+...+.+.+.+.+|+.++.+ .|++|+
T Consensus 67 ---------~Mg~~~D~~~IQ~r~LN-----~sKGPAVra~Ra----QaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli 127 (621)
T COG0445 67 ---------LMGKAADKAGIQFRMLN-----SSKGPAVRAPRA----QADKWLYRRAMKNELENQPNLHLLQG-EVEDLI 127 (621)
T ss_pred ---------hHHHhhhhcCCchhhcc-----CCCcchhcchhh----hhhHHHHHHHHHHHHhcCCCceehHh-hhHHHh
Confidence 00111233455553211 111111111221 22234556677778888889999987 688998
Q ss_pred ecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006387 243 TTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 243 ~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 282 (647)
.+++. +|.||+.. .|. .|.|++|||+||.|=+
T Consensus 128 ~e~~~---~v~GV~t~---~G~--~~~a~aVVlTTGTFL~ 159 (621)
T COG0445 128 VEEGQ---RVVGVVTA---DGP--EFHAKAVVLTTGTFLR 159 (621)
T ss_pred hcCCC---eEEEEEeC---CCC--eeecCEEEEeeccccc
Confidence 86443 68999764 454 6999999999998743
No 175
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.90 E-value=9.2e-09 Score=113.44 Aligned_cols=50 Identities=18% Similarity=0.207 Sum_probs=39.5
Q ss_pred cCceE-ECCCCCcccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhc
Q 006387 436 CGGVR-AGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKS 494 (647)
Q Consensus 436 ~GGi~-vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~ 494 (647)
.|.+. +|++++|++||+||+||++ +|. .....|+-.|++||.++.+|+.+
T Consensus 430 ~G~i~~~~~~~~Ts~~gVfAaGD~~-~g~--------~~~~~Av~~G~~AA~~i~~~L~g 480 (485)
T TIGR01317 430 RGNISAGYDDYSTSIPGVFAAGDCR-RGQ--------SLIVWAINEGRKAAAAVDRYLMG 480 (485)
T ss_pred CCCEEecCCCceECCCCEEEeeccC-CCc--------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 36664 4678899999999999997 332 23567899999999999999854
No 176
>PRK09126 hypothetical protein; Provisional
Probab=98.89 E-value=3.6e-08 Score=106.23 Aligned_cols=35 Identities=34% Similarity=0.529 Sum_probs=32.9
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCC
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH 122 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~ 122 (647)
++||+|||||++|+++|+.|+++| +|+|+||....
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 38 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLA 38 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcc
Confidence 689999999999999999999999 99999998753
No 177
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.89 E-value=6.2e-08 Score=105.89 Aligned_cols=70 Identities=7% Similarity=0.091 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEE-EEcCeEEECCCccccc
Q 006387 213 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVR-FISKVTLLASGGAGHI 283 (647)
Q Consensus 213 g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~-i~Ak~VVlAtGg~~~~ 283 (647)
-..++..|.+.++++ ||+|+.++.|++|+.+.++..++|+|+.+.....++.+. ..+|.||+++||+...
T Consensus 225 yeSLV~PL~~~Le~~-GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~n 295 (576)
T PRK13977 225 YESLVLPLIKYLEDH-GVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITES 295 (576)
T ss_pred hhHHHHHHHHHHHhC-CCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCccc
Confidence 357889999999985 999999999999998522212389999886422233333 4569999999999753
No 178
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.89 E-value=4.6e-08 Score=103.40 Aligned_cols=34 Identities=32% Similarity=0.403 Sum_probs=31.6
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH 122 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~ 122 (647)
.||+|||||++|+.||+.|++.| +|+|+|+.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 59999999999999999999999 99999987654
No 179
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.87 E-value=6.9e-08 Score=102.99 Aligned_cols=55 Identities=15% Similarity=0.047 Sum_probs=40.4
Q ss_pred cCceEECCCCCc-ccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhc
Q 006387 436 CGGVRAGLQGET-NVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKS 494 (647)
Q Consensus 436 ~GGi~vD~~~~T-~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~ 494 (647)
.|+|.||+++|| ++|++||+|||+ .+... ........|...|+.+|+++...++.
T Consensus 257 ~g~i~vd~~l~~~~~~~Iya~GD~~--~~~~~--~~~~~~~~A~~~g~~~a~ni~~~l~g 312 (364)
T TIGR03169 257 DGFLRVDPTLQSLSHPHVFAAGDCA--VITDA--PRPKAGVYAVRQAPILAANLRASLRG 312 (364)
T ss_pred CCeEEECCccccCCCCCEEEeeeee--ecCCC--CCCCchHHHHHhHHHHHHHHHHHhcC
Confidence 588999999998 999999999997 22211 11223345778899999888877654
No 180
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.87 E-value=5e-08 Score=107.01 Aligned_cols=60 Identities=7% Similarity=0.116 Sum_probs=45.3
Q ss_pred chHHHHHHHHHHHHc----CCC--cEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006387 212 TGREIERALLEAVVS----DPN--ISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 212 ~g~~~~~~L~~~~~~----~~g--v~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 282 (647)
....+...|.+.+.+ . | ++++++++|+++..+++ .+..|. +.+| .|+|+.||+|+|+++.
T Consensus 209 d~~~L~~al~~~a~~~~~~~-G~~v~i~~~t~V~~I~~~~~----~~~~V~---T~~G---~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 209 DYQKLSESFVKHARRDALVP-GKKISINLNTEVLNIERSND----SLYKIH---TNRG---EIRARFVVVSACGYSL 274 (497)
T ss_pred CHHHHHHHHHHHHHhhhhhc-CCCEEEEeCCEEEEEEecCC----CeEEEE---ECCC---EEEeCEEEECcChhHH
Confidence 456788889888876 4 5 88999999999987633 233343 2445 5899999999999874
No 181
>PRK06184 hypothetical protein; Provisional
Probab=98.86 E-value=5.8e-08 Score=108.11 Aligned_cols=61 Identities=16% Similarity=0.088 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006387 215 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 215 ~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 283 (647)
.+...|.+.+.+. |+++..+++++++..++++ +. +.+.+..+ ..+++|+.||.|+|..+.+
T Consensus 110 ~le~~L~~~l~~~-gv~i~~~~~v~~i~~~~~~----v~-v~~~~~~~--~~~i~a~~vVgADG~~S~v 170 (502)
T PRK06184 110 RTERILRERLAEL-GHRVEFGCELVGFEQDADG----VT-ARVAGPAG--EETVRARYLVGADGGRSFV 170 (502)
T ss_pred HHHHHHHHHHHHC-CCEEEeCcEEEEEEEcCCc----EE-EEEEeCCC--eEEEEeCEEEECCCCchHH
Confidence 4566777888774 8999999999999876443 32 22222222 2479999999999988753
No 182
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.86 E-value=5.3e-08 Score=109.27 Aligned_cols=159 Identities=19% Similarity=0.224 Sum_probs=88.7
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHHH
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR 164 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~ 164 (647)
...+||+|||||++|+++|+.|++.| +|+|+||........ .++. . ++...+
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~----ra~~--l---------------------~~~~~~ 60 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLP----RAVG--I---------------------DDEALR 60 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCC----ceee--e---------------------CHHHHH
Confidence 45689999999999999999999999 999999987532111 0111 0 011111
Q ss_pred HHHHHhHHHHHHHHHcC-----CCcccCCCCCcc--cc-c-cCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcc
Q 006387 165 VVCTEGPDRIRELIAIG-----ASFDRGEDGNLH--LA-R-EGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEH 235 (647)
Q Consensus 165 ~~~~~~~~~i~~l~~~G-----v~~~~~~~g~~~--~~-~-~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~ 235 (647)
.+.+- ...+.+.+.+ +.|.. .+|... +. . .+.+.++.. ....-..+.+.|.+.+.+.+|++|+.+
T Consensus 61 ~L~~l--Gl~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~g~~~~---~~~~q~~le~~L~~~~~~~~gv~v~~g 134 (538)
T PRK06183 61 VLQAI--GLADEVLPHTTPNHGMRFLD-AKGRCLAEIARPSTGEFGWPRR---NAFHQPLLEAVLRAGLARFPHVRVRFG 134 (538)
T ss_pred HHHHc--CChhHHHhhcccCCceEEEc-CCCCEEEEEcCCCCCCCCCChh---ccCChHHHHHHHHHHHHhCCCcEEEcC
Confidence 11000 0011111111 11211 122111 00 0 000001100 011223456677777776669999999
Q ss_pred eEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006387 236 HFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 236 ~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 283 (647)
++++++..++++ +. +.+.+ .+|+..+++|+.||.|.|..+.+
T Consensus 135 ~~v~~i~~~~~~----v~-v~~~~-~~G~~~~i~ad~vVgADG~~S~v 176 (538)
T PRK06183 135 HEVTALTQDDDG----VT-VTLTD-ADGQRETVRARYVVGCDGANSFV 176 (538)
T ss_pred CEEEEEEEcCCe----EE-EEEEc-CCCCEEEEEEEEEEecCCCchhH
Confidence 999999887443 32 33332 25656689999999999988753
No 183
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.86 E-value=9.8e-08 Score=108.97 Aligned_cols=39 Identities=31% Similarity=0.352 Sum_probs=34.9
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCC
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESN 125 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~ 125 (647)
...+|+|||+|+||++||..|++.| +|+|+|+.+..+|.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~ 348 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGM 348 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCe
Confidence 3578999999999999999999999 99999998876553
No 184
>PRK07045 putative monooxygenase; Reviewed
Probab=98.84 E-value=4.2e-08 Score=105.63 Aligned_cols=61 Identities=21% Similarity=0.229 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006387 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 282 (647)
..+.+.|.+.+.+.+|++++.+++++++..++++ .++.|.. .+|+ ++.|+.||-|.|..+.
T Consensus 106 ~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~---~~~~v~~---~~g~--~~~~~~vIgADG~~S~ 166 (388)
T PRK07045 106 EQLRRLLLAKLDGLPNVRLRFETSIERIERDADG---TVTSVTL---SDGE--RVAPTVLVGADGARSM 166 (388)
T ss_pred HHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCC---cEEEEEe---CCCC--EEECCEEEECCCCChH
Confidence 3566778888876679999999999999887554 4445543 3454 6899999999998874
No 185
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.84 E-value=7.9e-08 Score=103.47 Aligned_cols=36 Identities=36% Similarity=0.643 Sum_probs=33.1
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCC
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH 122 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~ 122 (647)
..+||+|||||+||+++|+.|++.| +|+|+||....
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP 40 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence 3589999999999999999999999 99999998754
No 186
>PRK06834 hypothetical protein; Provisional
Probab=98.84 E-value=6.2e-08 Score=106.98 Aligned_cols=59 Identities=17% Similarity=0.197 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006387 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 283 (647)
..+.+.|.+.+.+ .|++++.+++++++..++++ + .+.. .+|+ +++|+.||.|+|..+.+
T Consensus 100 ~~le~~L~~~l~~-~gv~i~~~~~v~~v~~~~~~----v---~v~~-~~g~--~i~a~~vVgADG~~S~v 158 (488)
T PRK06834 100 NHIERILAEWVGE-LGVPIYRGREVTGFAQDDTG----V---DVEL-SDGR--TLRAQYLVGCDGGRSLV 158 (488)
T ss_pred HHHHHHHHHHHHh-CCCEEEcCCEEEEEEEcCCe----E---EEEE-CCCC--EEEeCEEEEecCCCCCc
Confidence 3566777777776 49999999999999886433 2 2222 3453 68999999999988743
No 187
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.84 E-value=5.4e-08 Score=104.90 Aligned_cols=58 Identities=14% Similarity=0.179 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006387 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 282 (647)
..+...|.+.+.+ .|++++.++.|+++..+++ .+. +.. .+|+ ++.|+.||.|+|..+.
T Consensus 113 ~~l~~~L~~~~~~-~gv~i~~~~~v~~i~~~~~----~v~-v~~---~~g~--~~~a~~vV~AdG~~S~ 170 (392)
T PRK08773 113 DLLVDRLWAALHA-AGVQLHCPARVVALEQDAD----RVR-LRL---DDGR--RLEAALAIAADGAAST 170 (392)
T ss_pred HHHHHHHHHHHHh-CCCEEEcCCeEEEEEecCC----eEE-EEE---CCCC--EEEeCEEEEecCCCch
Confidence 4677888888887 4999999999999987633 232 322 3454 5899999999998764
No 188
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.83 E-value=3.5e-08 Score=106.04 Aligned_cols=146 Identities=21% Similarity=0.251 Sum_probs=87.9
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHHHHH
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVV 166 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~ 166 (647)
.+||+|||||++|+++|+.|++.| +|+|||+.+... ...| .... .
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~----~~~~-r~~~---------------------l-------- 47 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPREL----LERG-RGIA---------------------L-------- 47 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCcccc----ccCc-eeee---------------------e--------
Confidence 479999999999999999999999 999999982110 0001 0000 0
Q ss_pred HHHhHHHHHHHHHcCC-C--------ccc----CCCCC--ccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcE
Q 006387 167 CTEGPDRIRELIAIGA-S--------FDR----GEDGN--LHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNIS 231 (647)
Q Consensus 167 ~~~~~~~i~~l~~~Gv-~--------~~~----~~~g~--~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~ 231 (647)
.+..++.|++.|+ + ... ..++. ..+........+.. ....-..+...|.+.+.+.++|+
T Consensus 48 ---~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~L~~~~~~~~~v~ 121 (387)
T COG0654 48 ---SPNALRALERLGLWDRLEALGVPPLHVMVVDDGGRRLLIFDAAELGRGALG---YVVPRSDLLNALLEAARALPNVT 121 (387)
T ss_pred ---cHhHHHHHHHcCChhhhhhccCCceeeEEEecCCceeEEecccccCCCcce---EEeEhHHHHHHHHHHHhhCCCcE
Confidence 1222334444444 1 100 00110 00000000000000 01123568889999998877799
Q ss_pred EEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006387 232 VFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 232 i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 282 (647)
++.++.|+.+..+++ .+. +.. +. +|+ +++|+.||-|.|..+.
T Consensus 122 ~~~~~~v~~~~~~~~----~v~-v~l-~~-dG~--~~~a~llVgADG~~S~ 163 (387)
T COG0654 122 LRFGAEVEAVEQDGD----GVT-VTL-SF-DGE--TLDADLLVGADGANSA 163 (387)
T ss_pred EEcCceEEEEEEcCC----ceE-EEE-cC-CCc--EEecCEEEECCCCchH
Confidence 999999999998754 354 443 22 565 7999999999998774
No 189
>PRK02106 choline dehydrogenase; Validated
Probab=98.83 E-value=8.9e-08 Score=107.93 Aligned_cols=58 Identities=17% Similarity=0.270 Sum_probs=45.7
Q ss_pred HHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccc
Q 006387 219 ALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 219 ~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 281 (647)
.++..+.+++|++|+.++.|++|+.+ ++ +++||.+.+. .+....+.||.||||+|++.
T Consensus 205 ~~l~~a~~~~nl~i~~~a~V~rI~~~-~~---~a~GV~~~~~-~~~~~~~~ak~VILaaGai~ 262 (560)
T PRK02106 205 AYLDPALKRPNLTIVTHALTDRILFE-GK---RAVGVEYERG-GGRETARARREVILSAGAIN 262 (560)
T ss_pred HhhccccCCCCcEEEcCCEEEEEEEe-CC---eEEEEEEEeC-CcEEEEEeeeeEEEccCCCC
Confidence 34444555579999999999999987 44 8999998764 35555678999999999876
No 190
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.82 E-value=1.5e-08 Score=111.28 Aligned_cols=38 Identities=32% Similarity=0.363 Sum_probs=34.0
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCC
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES 124 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G 124 (647)
...+|+|||+|+||++||..|++.| +|+|+|+.+..+|
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG 178 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGG 178 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCc
Confidence 4579999999999999999999999 9999999876554
No 191
>PRK08244 hypothetical protein; Provisional
Probab=98.81 E-value=7.7e-08 Score=106.92 Aligned_cols=60 Identities=20% Similarity=0.194 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006387 215 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 215 ~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 282 (647)
.+...|.+.+.+ .|++++.+++++++..++++ +. +.+.+ .+| ..+++|+.||.|.|..+.
T Consensus 101 ~le~~L~~~~~~-~gv~v~~~~~v~~i~~~~~~----v~-v~~~~-~~g-~~~i~a~~vVgADG~~S~ 160 (493)
T PRK08244 101 ETEKVLEEHARS-LGVEIFRGAEVLAVRQDGDG----VE-VVVRG-PDG-LRTLTSSYVVGADGAGSI 160 (493)
T ss_pred HHHHHHHHHHHH-cCCeEEeCCEEEEEEEcCCe----EE-EEEEe-CCc-cEEEEeCEEEECCCCChH
Confidence 455666667766 49999999999999876432 32 33333 234 346999999999998774
No 192
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.81 E-value=8.9e-08 Score=102.91 Aligned_cols=59 Identities=20% Similarity=0.257 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006387 215 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 215 ~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 283 (647)
.+...|.+.+.+.+|++++.+++++++..++++ +. +.+ .+|. +++|+.||.|+|..+.+
T Consensus 111 ~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~----~~-v~~---~~g~--~~~~~lvIgADG~~S~v 169 (384)
T PRK08849 111 LIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG----NR-VTL---ESGA--EIEAKWVIGADGANSQV 169 (384)
T ss_pred HHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe----EE-EEE---CCCC--EEEeeEEEEecCCCchh
Confidence 456677787777678999999999999876443 21 322 3454 68999999999987753
No 193
>PRK07190 hypothetical protein; Provisional
Probab=98.80 E-value=8.5e-08 Score=105.78 Aligned_cols=36 Identities=25% Similarity=0.384 Sum_probs=33.1
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCC
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH 122 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~ 122 (647)
..+||+|||||++|+++|+.|++.| +|+||||.+..
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~ 40 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP 40 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 4589999999999999999999999 99999998754
No 194
>PRK08013 oxidoreductase; Provisional
Probab=98.80 E-value=8.3e-08 Score=103.70 Aligned_cols=60 Identities=10% Similarity=0.093 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006387 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 283 (647)
..+...|.+.+.+.+|++++.++.++++..++++ + -+.. .+|+ +++|+.||-|.|..+.+
T Consensus 111 ~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~----v-~v~~---~~g~--~i~a~lvVgADG~~S~v 170 (400)
T PRK08013 111 SVIHYALWQKAQQSSDITLLAPAELQQVAWGENE----A-FLTL---KDGS--MLTARLVVGADGANSWL 170 (400)
T ss_pred HHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe----E-EEEE---cCCC--EEEeeEEEEeCCCCcHH
Confidence 3577788888887668999999999999876443 2 1222 3454 58999999999987753
No 195
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.79 E-value=1.1e-07 Score=101.67 Aligned_cols=59 Identities=10% Similarity=0.345 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006387 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 283 (647)
..+...|.+.+.+.++++++.++.++++..++++ +. +.. .++ +++|+.||.|.|..+.+
T Consensus 104 ~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~----v~-v~~---~~~---~~~adlvIgADG~~S~v 162 (374)
T PRK06617 104 SDFKKILLSKITNNPLITLIDNNQYQEVISHNDY----SI-IKF---DDK---QIKCNLLIICDGANSKV 162 (374)
T ss_pred HHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe----EE-EEE---cCC---EEeeCEEEEeCCCCchh
Confidence 5678889998888667999999999999876432 32 332 233 69999999999988754
No 196
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.77 E-value=1e-07 Score=102.77 Aligned_cols=60 Identities=22% Similarity=0.274 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006387 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 283 (647)
..+...|.+.+.+.+|++++.++.++++..++++ + .+.. .+|+ +++|+.||.|+|..+.+
T Consensus 112 ~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~----~-~v~~---~~g~--~~~a~~vI~AdG~~S~v 171 (391)
T PRK08020 112 RVLQLALWQALEAHPNVTLRCPASLQALQRDDDG----W-ELTL---ADGE--EIQAKLVIGADGANSQV 171 (391)
T ss_pred HHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe----E-EEEE---CCCC--EEEeCEEEEeCCCCchh
Confidence 4566788888877669999999999999765332 2 2322 3453 58999999999987753
No 197
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.77 E-value=1.4e-07 Score=106.06 Aligned_cols=157 Identities=17% Similarity=0.239 Sum_probs=84.9
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHHHH
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 165 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~ 165 (647)
..+||+|||||++|+++|+.|++.| +|+|+||.+.... ++-.....+ ...+.++. . ++
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~------~~ra~~l~~--~~~~~l~~---l--Gl-------- 80 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLST------GSRAICFAK--RSLEIFDR---L--GC-------- 80 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCC------CCeEEEEcH--HHHHHHHH---c--CC--------
Confidence 5689999999999999999999999 9999999874321 111111100 00011100 0 00
Q ss_pred HHHHhHHHHHHHHHcCCCccc----CCCCCcc---ccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEE
Q 006387 166 VCTEGPDRIRELIAIGASFDR----GEDGNLH---LAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFA 238 (647)
Q Consensus 166 ~~~~~~~~i~~l~~~Gv~~~~----~~~g~~~---~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v 238 (647)
.+.+.+.|+.+.. ..++.+. .....+..++..+. ..-..+...|.+.+.+.++++++.++++
T Consensus 81 --------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~q~~le~~L~~~~~~~~~v~v~~~~~v 149 (547)
T PRK08132 81 --------GERMVDKGVSWNVGKVFLRDEEVYRFDLLPEPGHRRPAFIN---LQQYYVEGYLVERAQALPNIDLRWKNKV 149 (547)
T ss_pred --------cHHHHhhCceeeceeEEeCCCeEEEecCCCCCCCCCCceEe---cCHHHHHHHHHHHHHhCCCcEEEeCCEE
Confidence 0111122221110 0011110 00001111111111 1223456777788877668999999999
Q ss_pred EEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006387 239 IDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 239 ~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 282 (647)
+++..++++ +. +.+.+ .++ ..+++|+.||.|+|..+.
T Consensus 150 ~~i~~~~~~----v~-v~~~~-~~g-~~~i~ad~vVgADG~~S~ 186 (547)
T PRK08132 150 TGLEQHDDG----VT-LTVET-PDG-PYTLEADWVIACDGARSP 186 (547)
T ss_pred EEEEEcCCE----EE-EEEEC-CCC-cEEEEeCEEEECCCCCcH
Confidence 999876432 22 33322 233 246899999999998875
No 198
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.77 E-value=1e-07 Score=102.34 Aligned_cols=59 Identities=15% Similarity=0.265 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006387 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 282 (647)
..+...|.+.+.+.++++++.++.|+++..++ + .+ .+.. .+|+ .+.|+.||.|+|..+.
T Consensus 106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~-~---~~-~v~~---~~g~--~~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 106 RVLQQALWERLQEYPNVTLLCPARVVELPRHS-D---HV-ELTL---DDGQ--QLRARLLVGADGANSK 164 (385)
T ss_pred HHHHHHHHHHHHhCCCcEEecCCeEEEEEecC-C---ee-EEEE---CCCC--EEEeeEEEEeCCCCCH
Confidence 46778888888875449999999999998763 3 23 2322 3454 4899999999997764
No 199
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=98.76 E-value=1.7e-08 Score=93.60 Aligned_cols=145 Identities=19% Similarity=0.227 Sum_probs=92.0
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC---CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHH
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG---TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDET 162 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G---~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~ 162 (647)
..+.||+|||+|.|||+|||..+++. +|.|||..-.+||++.. +| ..
T Consensus 74 yAesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWL-GG-QL---------------------------- 123 (328)
T KOG2960|consen 74 YAESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWL-GG-QL---------------------------- 123 (328)
T ss_pred hhccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccc-cc-hh----------------------------
Confidence 45689999999999999999999664 89999998877765533 22 11
Q ss_pred HHHHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEE
Q 006387 163 VRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLL 242 (647)
Q Consensus 163 ~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~ 242 (647)
...++-+- .+--+|.+.|++++... .|... - ...-+...+..++...+||++++-+-+.+|+
T Consensus 124 FSAMvvRK-PAhLFL~EigvpYedeg--dYVVV----------K-----HAALFtSTvmsk~LalPNVKLFNAtavEDLi 185 (328)
T KOG2960|consen 124 FSAMVVRK-PAHLFLQEIGVPYEDEG--DYVVV----------K-----HAALFTSTVMSKVLALPNVKLFNATAVEDLI 185 (328)
T ss_pred hhhhhhcC-hHHHHHHHhCCCcccCC--CEEEE----------e-----eHHHHHHHHHHHHhcCCcceeechhhhhhhh
Confidence 00111111 11235678899987543 23211 0 1234566677777778999999999999998
Q ss_pred ecCCC-CCCeEEEEEEEec----CCC-----eEEEEEcCeEEECCC
Q 006387 243 TTLDG-PDAVCHGVDTLNV----ETQ-----EVVRFISKVTLLASG 278 (647)
Q Consensus 243 ~~~~g-~~~~v~Gv~~~~~----~~g-----~~~~i~Ak~VVlAtG 278 (647)
..+.. +..+|.||+..-+ ..| ..-+|.|+.||-+||
T Consensus 186 vk~g~~g~~rvaGVVTNWtLV~qnHgtQsCMDPNviea~~vvS~tG 231 (328)
T KOG2960|consen 186 VKPGEKGEVRVAGVVTNWTLVTQNHGTQSCMDPNVIEAAVVVSTTG 231 (328)
T ss_pred cccCcCCceEEEEEEeeeEEeeeccCccccCCCCeeeEEEEEEccC
Confidence 86321 1236777754211 111 123577777777776
No 200
>PRK11445 putative oxidoreductase; Provisional
Probab=98.76 E-value=1.8e-07 Score=99.10 Aligned_cols=33 Identities=33% Similarity=0.427 Sum_probs=30.2
Q ss_pred cCEEEECcchHHHHHHHHHHhcCCeEEEEecCC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHGTVAVITKAEP 121 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G~V~llEk~~~ 121 (647)
|||+|||||+||+++|+.|++.-+|+|+|+.+.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~~~V~liE~~~~ 34 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGKMKVIAIDKKHQ 34 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhccCCEEEEECCCc
Confidence 799999999999999999988659999999864
No 201
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.75 E-value=5.2e-07 Score=95.73 Aligned_cols=60 Identities=15% Similarity=0.083 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcc
Q 006387 213 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGA 280 (647)
Q Consensus 213 g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~ 280 (647)
|..+.++|.+.+++. |++++.++.|+++..+ ++ ++.++... ++....+.|+.||||||+|
T Consensus 262 G~RL~~aL~~~~~~~-Gg~il~g~~V~~i~~~-~~---~v~~V~t~---~g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 262 GIRLEEALKHRFEQL-GGVMLPGDRVLRAEFE-GN---RVTRIHTR---NHRDIPLRADHFVLASGSF 321 (419)
T ss_pred HHHHHHHHHHHHHHC-CCEEEECcEEEEEEee-CC---eEEEEEec---CCccceEECCEEEEccCCC
Confidence 566778888888875 9999999999999876 44 67776542 2323469999999999988
No 202
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.74 E-value=2.9e-07 Score=103.22 Aligned_cols=59 Identities=20% Similarity=0.273 Sum_probs=44.8
Q ss_pred HHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccc
Q 006387 218 RALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 218 ~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 281 (647)
..++..+.+++|++|+.++.|++|+.+ ++ +++||.+.+. ++....+.||.||||+|++.
T Consensus 197 ~~~l~~a~~r~nl~i~~~~~V~rI~~~-~~---ra~GV~~~~~-~~~~~~~~ak~VIlaAGai~ 255 (532)
T TIGR01810 197 RAYLHPAMKRPNLEVQTRAFVTKINFE-GN---RATGVEFKKG-GRKEHTEANKEVILSAGAIN 255 (532)
T ss_pred HHHhhhhccCCCeEEEeCCEEEEEEec-CC---eEEEEEEEeC-CcEEEEEEeeeEEEccCCCC
Confidence 344555555679999999999999986 55 8999988653 23344568899999999865
No 203
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.73 E-value=1.1e-07 Score=102.92 Aligned_cols=59 Identities=17% Similarity=0.121 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006387 213 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 213 g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 282 (647)
...+...|.+.+.+. |++++.++.|+++..+++ .+ .+.. .+|+ .+.|+.||.|+|..+.
T Consensus 110 r~~l~~~L~~~~~~~-gv~v~~~~~v~~i~~~~~----~v-~v~~---~~g~--~~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 110 NRVLINALRKRAEAL-GIDLREATSVTDFETRDE----GV-TVTL---SDGS--VLEARLLVAADGARSK 168 (403)
T ss_pred hHHHHHHHHHHHHhC-CCEEEcCCEEEEEEEcCC----EE-EEEE---CCCC--EEEeCEEEEcCCCChH
Confidence 457788888888874 999999999999987633 23 2322 3454 5899999999997664
No 204
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.72 E-value=2e-07 Score=100.39 Aligned_cols=62 Identities=16% Similarity=0.016 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006387 215 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 215 ~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 283 (647)
.+.+.|++.+.+ .|++++.+++++++...++. ...|.+. .+|+..+++||.||-|.|..+.+
T Consensus 104 ~l~~~Ll~~a~~-~gv~v~~~~~v~~i~~~~~~----~~~V~~~--~~G~~~~i~ad~vVgADG~~S~v 165 (392)
T PRK08243 104 EVTRDLMAARLA-AGGPIRFEASDVALHDFDSD----RPYVTYE--KDGEEHRLDCDFIAGCDGFHGVS 165 (392)
T ss_pred HHHHHHHHHHHh-CCCeEEEeeeEEEEEecCCC----ceEEEEE--cCCeEEEEEeCEEEECCCCCCch
Confidence 456677777766 59999999999998752222 2234442 35766789999999999977743
No 205
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.72 E-value=3.1e-07 Score=101.18 Aligned_cols=56 Identities=11% Similarity=0.181 Sum_probs=46.8
Q ss_pred cCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006387 226 SDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 226 ~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 282 (647)
+.++++|+.++.|++|..++++ ..+|.||.+.+..+|+.++++||.||||+|+...
T Consensus 225 ~~~n~~l~~~a~v~~i~~d~~~-~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIet 280 (544)
T TIGR02462 225 PSERFTLLTNHRCTRLVRNETN-ESEIEAALVRDLLSGDRFEIKADVYVLACGAVHN 280 (544)
T ss_pred cCCCEEEEcCCEEEEEEeCCCC-CceeEEEEEEECCCCcEEEEECCEEEEccCchhh
Confidence 3568999999999999987432 1279999999876788889999999999998764
No 206
>PRK06847 hypothetical protein; Provisional
Probab=98.72 E-value=3e-07 Score=98.51 Aligned_cols=153 Identities=16% Similarity=0.184 Sum_probs=84.2
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHHHHH
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVV 166 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~ 166 (647)
..||+|||||++|+++|+.|++.| +|+|+|+...... ...|+... +...+.+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~----~g~g~~l~-----------------------~~~~~~l 56 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRV----YGAGITLQ-----------------------GNALRAL 56 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcc----CCceeeec-----------------------HHHHHHH
Confidence 469999999999999999999999 9999999764321 01122110 0000000
Q ss_pred HHHhHHHHHHHHHcCCCccc----CCCCCccccc----cCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEE
Q 006387 167 CTEGPDRIRELIAIGASFDR----GEDGNLHLAR----EGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFA 238 (647)
Q Consensus 167 ~~~~~~~i~~l~~~Gv~~~~----~~~g~~~~~~----~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v 238 (647)
..- ...+.+.+.+.+... +.+|...... ..+..++. ........+...|.+.+.+ .|++++.++.+
T Consensus 57 ~~~--gl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~i~r~~l~~~L~~~~~~-~gv~v~~~~~v 130 (375)
T PRK06847 57 REL--GVLDECLEAGFGFDGVDLFDPDGTLLAELPTPRLAGDDLPG---GGGIMRPALARILADAARA-AGADVRLGTTV 130 (375)
T ss_pred HHc--CCHHHHHHhCCCccceEEECCCCCEEEecCcccccccCCCC---cccCcHHHHHHHHHHHHHH-hCCEEEeCCEE
Confidence 000 001112222222110 1122211000 00000000 0112345677888888876 49999999999
Q ss_pred EEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006387 239 IDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 239 ~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 283 (647)
+++..++ + .+ .+.. .+|+ ++.|+.||.|+|..+..
T Consensus 131 ~~i~~~~-~---~~-~v~~---~~g~--~~~ad~vI~AdG~~s~~ 165 (375)
T PRK06847 131 TAIEQDD-D---GV-TVTF---SDGT--TGRYDLVVGADGLYSKV 165 (375)
T ss_pred EEEEEcC-C---EE-EEEE---cCCC--EEEcCEEEECcCCCcch
Confidence 9997653 3 22 2332 3454 58999999999987743
No 207
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.71 E-value=1.8e-07 Score=100.96 Aligned_cols=58 Identities=12% Similarity=0.228 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006387 215 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 215 ~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 282 (647)
.+.+.|.+.+.+.+|++++.+++++++..++++ +. +.. .+|. .+.|+.||.|+|..+.
T Consensus 113 ~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~----~~-v~~---~~g~--~~~a~~vI~AdG~~S~ 170 (395)
T PRK05732 113 DVGQRLFALLDKAPGVTLHCPARVANVERTQGS----VR-VTL---DDGE--TLTGRLLVAADGSHSA 170 (395)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe----EE-EEE---CCCC--EEEeCEEEEecCCChh
Confidence 455677777776668999999999999765332 21 322 3343 5899999999998764
No 208
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.71 E-value=2.1e-07 Score=100.19 Aligned_cols=37 Identities=38% Similarity=0.608 Sum_probs=33.6
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCC
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH 122 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~ 122 (647)
+..+||+|||||++|+++|+.|++.| +|+|+|+.+..
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~ 42 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY 42 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 45689999999999999999999999 99999998643
No 209
>PRK07538 hypothetical protein; Provisional
Probab=98.70 E-value=2.7e-07 Score=100.24 Aligned_cols=64 Identities=19% Similarity=0.079 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHcCCC-cEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006387 214 REIERALLEAVVSDPN-ISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~g-v~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 282 (647)
..+...|.+.+.+..| ++|+.+++|+++..++++ .++ .+.+..+|+..+++||.||-|.|..+.
T Consensus 102 ~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~---~~~--~~~~~~~g~~~~~~adlvIgADG~~S~ 166 (413)
T PRK07538 102 GELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADV---TVV--FLGDRAGGDLVSVRGDVLIGADGIHSA 166 (413)
T ss_pred HHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCc---eEE--EEeccCCCccceEEeeEEEECCCCCHH
Confidence 4567778888765434 579999999999876443 332 233333455567999999999998775
No 210
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.69 E-value=2.9e-07 Score=99.74 Aligned_cols=59 Identities=15% Similarity=0.237 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006387 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 283 (647)
..+...|.+.+.+ .|++++.+++++++..++++ +. +.. .+|+ +++|+.||.|+|..+.+
T Consensus 112 ~~l~~~L~~~~~~-~gv~v~~~~~v~~i~~~~~~----v~-v~~---~~g~--~~~a~~vVgAdG~~S~v 170 (405)
T PRK05714 112 RVVQDALLERLHD-SDIGLLANARLEQMRRSGDD----WL-LTL---ADGR--QLRAPLVVAADGANSAV 170 (405)
T ss_pred HHHHHHHHHHHhc-CCCEEEcCCEEEEEEEcCCe----EE-EEE---CCCC--EEEeCEEEEecCCCchh
Confidence 3566788888877 49999999999999876332 21 222 3453 58999999999987743
No 211
>PLN02785 Protein HOTHEAD
Probab=98.69 E-value=6.3e-07 Score=100.64 Aligned_cols=56 Identities=16% Similarity=0.230 Sum_probs=40.9
Q ss_pred cCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEE-E----EcCeEEECCCcccc
Q 006387 226 SDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVR-F----ISKVTLLASGGAGH 282 (647)
Q Consensus 226 ~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~-i----~Ak~VVlAtGg~~~ 282 (647)
+..|++|+.++.|++|+.++++...+++||.+.+.. |..++ + .++.||||+|+++.
T Consensus 231 ~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~~~-g~~~~~~~~~~~~~eVILsAGai~s 291 (587)
T PLN02785 231 NPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKDEN-GNQHQAFLSNNKGSEIILSAGAIGS 291 (587)
T ss_pred CCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEECC-CceEEEEeecccCceEEecccccCC
Confidence 346899999999999998743212379999987743 44333 2 24899999998763
No 212
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.69 E-value=2.7e-07 Score=99.95 Aligned_cols=59 Identities=17% Similarity=0.208 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006387 215 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 215 ~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 283 (647)
.+...|.+.+.+.+|++++.+++|+++..++++ + .+.. .+|+ .++|+.||.|.|..+.+
T Consensus 112 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~----~-~v~~---~~g~--~~~a~lvIgADG~~S~v 170 (405)
T PRK08850 112 VIQLALLEQVQKQDNVTLLMPARCQSIAVGESE----A-WLTL---DNGQ--ALTAKLVVGADGANSWL 170 (405)
T ss_pred HHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe----E-EEEE---CCCC--EEEeCEEEEeCCCCChh
Confidence 466778888877668999999999999876332 2 2332 3454 58999999999977643
No 213
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.69 E-value=1.8e-07 Score=90.83 Aligned_cols=59 Identities=15% Similarity=0.090 Sum_probs=37.3
Q ss_pred chHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccc
Q 006387 212 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 212 ~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 281 (647)
++..+.+.|...+.+ .++++..+++|+++..++++ ..+ ...++ ..++|+.||+|||.++
T Consensus 80 ~~~~v~~yl~~~~~~-~~l~i~~~~~V~~v~~~~~~-------w~v-~~~~~--~~~~a~~VVlAtG~~~ 138 (203)
T PF13738_consen 80 SGEEVLDYLQEYAER-FGLEIRFNTRVESVRRDGDG-------WTV-TTRDG--RTIRADRVVLATGHYS 138 (203)
T ss_dssp BHHHHHHHHHHHHHH-TTGGEETS--EEEEEEETTT-------EEE-EETTS---EEEEEEEEE---SSC
T ss_pred CHHHHHHHHHHHHhh-cCcccccCCEEEEEEEeccE-------EEE-EEEec--ceeeeeeEEEeeeccC
Confidence 355666666666666 48999999999999988443 222 22455 4688999999999765
No 214
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.68 E-value=2.8e-07 Score=99.51 Aligned_cols=60 Identities=20% Similarity=0.336 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006387 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 283 (647)
..+...|.+.+.+.++++++.++.++++..++++ +.+.. .+|+ ++.|+.||.|+|..+..
T Consensus 109 ~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-------v~v~~-~~g~--~~~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 109 ADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG-------VTVFD-QQGN--RWTGDALIGCDGVKSVV 168 (396)
T ss_pred HHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc-------eEEEE-cCCC--EEecCEEEECCCcChHH
Confidence 4577788888877656999999999999865332 22222 3453 58999999999988764
No 215
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.68 E-value=1.2e-06 Score=97.23 Aligned_cols=58 Identities=12% Similarity=0.140 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccc
Q 006387 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 281 (647)
..+...|.+.+++. |++|+.++.|.++..+ ++ ++.||.+. +|+ .+.|+.||+|+|...
T Consensus 229 ~~l~~~L~~~~~~~-G~~i~~~~~V~~I~~~-~~---~~~gv~~~---~g~--~~~ad~vV~a~~~~~ 286 (493)
T TIGR02730 229 GQIAESLVKGLEKH-GGQIRYRARVTKIILE-NG---KAVGVKLA---DGE--KIYAKRIVSNATRWD 286 (493)
T ss_pred HHHHHHHHHHHHHC-CCEEEeCCeeeEEEec-CC---cEEEEEeC---CCC--EEEcCEEEECCChHH
Confidence 46788899999874 9999999999999886 44 67788653 454 588999999998654
No 216
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=1.6e-07 Score=97.18 Aligned_cols=155 Identities=21% Similarity=0.293 Sum_probs=90.9
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCC--CCCCccccCCCeeee--cCCCCCHHHHHHHHHHhcccCCCH
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP--HESNTNYAQGGVSAV--LCPSDSVESHMQDTIVAGAYLCDD 160 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~--~~G~t~~a~Ggi~~~--~~~~d~~~~~~~~~~~~g~~~~~~ 160 (647)
...|||||||||-||+-||..+++.| +.+|+....- ..-+..-+-||+.-. ..+-|...-.+ ...||.
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~-------~rvcD~ 98 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLC-------SRVCDQ 98 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhhcchH-------hhhhhh
Confidence 45799999999999999999999999 9999987643 222333345666421 11111111111 111222
Q ss_pred HHHHHHHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEE
Q 006387 161 ETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAID 240 (647)
Q Consensus 161 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~ 240 (647)
..+ .+..|.. .......-+| ....-+.+.+.+.+.+...++.+|.++ .|.+
T Consensus 99 s~v---------q~k~LNr---------------s~GPAVwg~R----AQiDR~lYkk~MQkei~st~nL~ire~-~V~d 149 (679)
T KOG2311|consen 99 SGV---------QYKVLNR---------------SKGPAVWGLR----AQIDRKLYKKNMQKEISSTPNLEIREG-AVAD 149 (679)
T ss_pred hhh---------hHHHhhc---------------cCCCcccChH----HhhhHHHHHHHHHHHhccCCcchhhhh-hhhh
Confidence 221 1122211 0000000111 112234566677777777789999988 5777
Q ss_pred EEecCCC-CCCeEEEEEEEecCCCeEEEEEcCeEEECCCccc
Q 006387 241 LLTTLDG-PDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 241 l~~~~~g-~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 281 (647)
|+..+.+ ...+|.||+..| |. .|.|+.|||.||.|=
T Consensus 150 liv~~~~~~~~~~~gV~l~d---gt--~v~a~~VilTTGTFL 186 (679)
T KOG2311|consen 150 LIVEDPDDGHCVVSGVVLVD---GT--VVYAESVILTTGTFL 186 (679)
T ss_pred eeeccCCCCceEEEEEEEec---Cc--EeccceEEEeeccce
Confidence 7765332 124688998864 54 699999999999874
No 217
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.64 E-value=5.3e-07 Score=97.03 Aligned_cols=63 Identities=17% Similarity=0.065 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006387 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 283 (647)
..+...|.+.+.+. |+.++.++.++.+...++. ..+|.+. .+|+...++|+.||-|.|..+.+
T Consensus 103 ~~l~~~L~~~~~~~-g~~~~~~~~~v~~~~~~~~----~~~V~~~--~~g~~~~i~adlvIGADG~~S~V 165 (390)
T TIGR02360 103 TEVTRDLMEAREAA-GLTTVYDADDVRLHDLAGD----RPYVTFE--RDGERHRLDCDFIAGCDGFHGVS 165 (390)
T ss_pred HHHHHHHHHHHHhc-CCeEEEeeeeEEEEecCCC----ccEEEEE--ECCeEEEEEeCEEEECCCCchhh
Confidence 35667788877764 8899999888887653222 1244442 25665679999999999987753
No 218
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.64 E-value=5.5e-08 Score=109.65 Aligned_cols=51 Identities=16% Similarity=0.194 Sum_probs=42.2
Q ss_pred cCceEECC-CCCcccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhcc
Q 006387 436 CGGVRAGL-QGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKST 495 (647)
Q Consensus 436 ~GGi~vD~-~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~ 495 (647)
.|.|.||. ..+|++||+||+||++ .|. ..+..|+-.|+.||.++..++...
T Consensus 395 ~G~i~vd~~~~~ts~~~Vfa~GD~~-~g~--------~~v~~Av~~G~~aA~~i~~~L~g~ 446 (564)
T PRK12771 395 RGVVQVDPNFMMTGRPGVFAGGDMV-PGP--------RTVTTAIGHGKKAARNIDAFLGGE 446 (564)
T ss_pred CCCEEeCCCCccCCCCCEEeccCcC-CCc--------hHHHHHHHHHHHHHHHHHHHHcCC
Confidence 46789998 6789999999999997 332 357789999999999999998654
No 219
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.63 E-value=3.6e-07 Score=98.11 Aligned_cols=59 Identities=17% Similarity=0.255 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006387 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 282 (647)
..+.+.|.+.+.+..|++++.++.|+++..++++ + .+.. .+|+ .+.|+.||.|.|..+.
T Consensus 105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~----~-~v~~---~~g~--~~~ad~vV~AdG~~S~ 163 (382)
T TIGR01984 105 ADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY----V-RVTL---DNGQ--QLRAKLLIAADGANSK 163 (382)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe----E-EEEE---CCCC--EEEeeEEEEecCCChH
Confidence 4677888888876459999999999999876332 2 2322 3454 5899999999997764
No 220
>PRK09897 hypothetical protein; Provisional
Probab=98.59 E-value=1.3e-06 Score=96.38 Aligned_cols=157 Identities=13% Similarity=0.161 Sum_probs=80.7
Q ss_pred cCEEEECcchHHHHHHHHHHhcC---CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHHHH
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG---TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 165 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G---~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~ 165 (647)
.+|+|||+|++|+++|..|.+.+ +|+|+|+....|....+.... ....+...+.........+.+.+.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~---------~~~~L~~N~~~~~~p~~~~~f~~W 72 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEE---------NSKMMLANIASIEIPPIYCTYLEW 72 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCC---------ChHHHHhcccccccCCChHHHHHH
Confidence 47999999999999999998865 799999977555333222110 000000000000000011122221
Q ss_pred HHHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchH---HHHHHHHHHHHcCCC--cEEEcceEEEE
Q 006387 166 VCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGR---EIERALLEAVVSDPN--ISVFEHHFAID 240 (647)
Q Consensus 166 ~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~---~~~~~L~~~~~~~~g--v~i~~~~~v~~ 240 (647)
+... ...++.+.|++.....++. ..+|..+ |. .....+.+.+.+. | ++++.+++|++
T Consensus 73 l~~~---~~~~~~~~g~~~~~l~~~~---------f~PR~l~-----G~YL~~~f~~l~~~a~~~-G~~V~v~~~~~V~~ 134 (534)
T PRK09897 73 LQKQ---EDSHLQRYGVKKETLHDRQ---------FLPRILL-----GEYFRDQFLRLVDQARQQ-KFAVAVYESCQVTD 134 (534)
T ss_pred hhhh---hHHHHHhcCCcceeecCCc---------cCCeecc-----hHHHHHHHHHHHHHHHHc-CCeEEEEECCEEEE
Confidence 1111 1112334454432221221 2234322 32 2334455555553 5 78888989999
Q ss_pred EEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccc
Q 006387 241 LLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 241 l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 281 (647)
+..++ + ++.+....++. .+.|+.||||||...
T Consensus 135 I~~~~-~------g~~V~t~~gg~--~i~aD~VVLAtGh~~ 166 (534)
T PRK09897 135 LQITN-A------GVMLATNQDLP--SETFDLAVIATGHVW 166 (534)
T ss_pred EEEeC-C------EEEEEECCCCe--EEEcCEEEECCCCCC
Confidence 97763 3 23332212232 589999999999743
No 221
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.59 E-value=5.9e-07 Score=96.72 Aligned_cols=35 Identities=46% Similarity=0.708 Sum_probs=31.7
Q ss_pred CEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCC
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES 124 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G 124 (647)
||+|||||+||+++|+.|++.| +|+|||+.+..++
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~ 36 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPG 36 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCC
Confidence 8999999999999999999999 9999999865433
No 222
>PTZ00367 squalene epoxidase; Provisional
Probab=98.58 E-value=8.1e-07 Score=99.12 Aligned_cols=35 Identities=23% Similarity=0.428 Sum_probs=32.5
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
...+||+|||||++|+++|+.|++.| +|+|+|+..
T Consensus 31 ~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 31 NYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred ccCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 35799999999999999999999999 999999975
No 223
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.57 E-value=9.2e-07 Score=96.64 Aligned_cols=38 Identities=34% Similarity=0.499 Sum_probs=34.6
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCC
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES 124 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G 124 (647)
...+|+|||||+|||+||.+|.+.| +|+|+|+....||
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG 47 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGG 47 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcc
Confidence 3579999999999999999999999 9999999887654
No 224
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.57 E-value=6.3e-06 Score=88.09 Aligned_cols=33 Identities=33% Similarity=0.547 Sum_probs=30.0
Q ss_pred CEEEECcchHHHHHHHHH--HhcC-CeEEEEecCCC
Q 006387 90 DFSVIGSGVAGLCYALEV--AKHG-TVAVITKAEPH 122 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~a--a~~G-~V~llEk~~~~ 122 (647)
||+|||||+||+++|+.| ++.| +|+|||+....
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 899999999999999999 7778 99999987654
No 225
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.56 E-value=9.3e-07 Score=95.54 Aligned_cols=63 Identities=13% Similarity=0.120 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006387 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 283 (647)
..+...|.+.+.+.++++++.+++++++..++++ + .+.+.+..++ .++.||.||-|.|..+..
T Consensus 107 ~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~----v-~v~~~~~~~~--~~~~adlvIgADG~~S~v 169 (400)
T PRK06475 107 ADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS----I-TATIIRTNSV--ETVSAAYLIACDGVWSML 169 (400)
T ss_pred HHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc----e-EEEEEeCCCC--cEEecCEEEECCCccHhH
Confidence 4677888888876568999999999999865332 3 2333332223 258999999999988754
No 226
>PRK06996 hypothetical protein; Provisional
Probab=98.54 E-value=1.6e-06 Score=93.70 Aligned_cols=58 Identities=19% Similarity=0.161 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecC-CCeEEEEEcCeEEECCCcc
Q 006387 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVE-TQEVVRFISKVTLLASGGA 280 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~-~g~~~~i~Ak~VVlAtGg~ 280 (647)
..+...|.+.+.+. +++++.++.++++..+.++ +.+.... +|+ .+++|+.||.|.|+.
T Consensus 115 ~~l~~~L~~~~~~~-g~~~~~~~~v~~~~~~~~~-------v~v~~~~~~g~-~~i~a~lvIgADG~~ 173 (398)
T PRK06996 115 GSLVAALARAVRGT-PVRWLTSTTAHAPAQDADG-------VTLALGTPQGA-RTLRARIAVQAEGGL 173 (398)
T ss_pred HHHHHHHHHHHHhC-CCEEEcCCeeeeeeecCCe-------EEEEECCCCcc-eEEeeeEEEECCCCC
Confidence 46778888888874 8999999999998765332 3332211 232 469999999999963
No 227
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.54 E-value=1.3e-06 Score=87.23 Aligned_cols=64 Identities=11% Similarity=-0.006 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC-CCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccCC
Q 006387 213 GREIERALLEAVVSDPNISVFEHHFAIDLLTTL-DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYP 285 (647)
Q Consensus 213 g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~-~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~ 285 (647)
....++.|...+++. |+.++.+..|+.+...+ ++ ..++|.. .+|. .+.||.+|+++|.+-.-+.
T Consensus 152 a~kslk~~~~~~~~~-G~i~~dg~~v~~~~~~~e~~---~~v~V~T---t~gs--~Y~akkiI~t~GaWi~klL 216 (399)
T KOG2820|consen 152 AAKSLKALQDKAREL-GVIFRDGEKVKFIKFVDEEG---NHVSVQT---TDGS--IYHAKKIIFTVGAWINKLL 216 (399)
T ss_pred HHHHHHHHHHHHHHc-CeEEecCcceeeEeeccCCC---ceeEEEe---ccCC--eeecceEEEEecHHHHhhc
Confidence 356778888888884 99999999888776432 23 3444443 3453 5899999999999876443
No 228
>PRK07236 hypothetical protein; Provisional
Probab=98.54 E-value=1.2e-06 Score=94.27 Aligned_cols=35 Identities=29% Similarity=0.358 Sum_probs=32.4
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCC
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~ 121 (647)
...||+|||||++|+++|+.|++.| +|+|+||.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 3589999999999999999999999 9999999863
No 229
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.53 E-value=3e-07 Score=96.26 Aligned_cols=70 Identities=21% Similarity=0.208 Sum_probs=48.0
Q ss_pred CCCCCCCCeeeeeeeceecCceEECCCCCcccCceeecccccCCCCCCCCccc-hhhhHHHHHHHHHHHHHH
Q 006387 418 GLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLA-SNSLLEALVFARRAVQPS 488 (647)
Q Consensus 418 G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~-g~sl~~a~v~G~~Ag~~a 488 (647)
|+.|....++. .......|+|.||+.+||++||+||+||++..-+++-+... .--...|..+|+.|+.++
T Consensus 310 G~~p~t~~~~~-g~~~~~~G~i~V~~~f~t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai 380 (478)
T KOG1336|consen 310 GIKPNTSFLEK-GILLDSKGGIKVDEFFQTSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVKAI 380 (478)
T ss_pred ccccccccccc-cceecccCCEeehhceeeccCCcccccceeecccccccccccchHHHHHHHHHHhhhhhh
Confidence 55566555555 33345679999999999999999999999955555543322 233456777777666544
No 230
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=98.53 E-value=1.3e-06 Score=97.57 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=47.2
Q ss_pred HHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCC-eEEEEEcCeEEECCCcccc
Q 006387 218 RALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQ-EVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 218 ~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g-~~~~i~Ak~VVlAtGg~~~ 282 (647)
..++..+.+++|++|.+++.|+.|+.+ .+ +++|+.+.....+ ..+.+.++.||||+|++..
T Consensus 206 ~a~l~~a~~~~nl~v~t~a~v~ri~~~-~~---r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~S 267 (542)
T COG2303 206 RAYLKPALKRPNLTLLTGARVRRILLE-GD---RAVGVEVEIGDGGTIETAVAAREVVLAAGAINS 267 (542)
T ss_pred hhcchhHhcCCceEEecCCEEEEEEEE-CC---eeEEEEEEeCCCCceEEEecCceEEEeccccCC
Confidence 445555677789999999999999998 44 7888888754433 3556778999999998874
No 231
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.53 E-value=1.2e-06 Score=87.39 Aligned_cols=57 Identities=23% Similarity=0.358 Sum_probs=46.2
Q ss_pred CccccCEEEECcchHHHHHHHHHHhc----C-CeEEEEecCCC-CCCccccCCCeeeecCCCC
Q 006387 85 SVKYFDFSVIGSGVAGLCYALEVAKH----G-TVAVITKAEPH-ESNTNYAQGGVSAVLCPSD 141 (647)
Q Consensus 85 ~~~~~DVlVIGgG~AGl~AA~~aa~~----G-~V~llEk~~~~-~G~t~~a~Ggi~~~~~~~d 141 (647)
-..++||+|||||..|++.|+.|.++ | +|+|+|+.... ..+|..+.||++...+..+
T Consensus 83 f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFSlpE 145 (509)
T KOG2853|consen 83 FPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFSLPE 145 (509)
T ss_pred cccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecccch
Confidence 34689999999999999999999763 5 99999998764 4566678899998765433
No 232
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.49 E-value=1.8e-06 Score=95.32 Aligned_cols=39 Identities=33% Similarity=0.559 Sum_probs=36.2
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCc
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT 126 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t 126 (647)
.+||||||||.+||+||..|+++| +|+|+||....||..
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a 42 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRA 42 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcce
Confidence 589999999999999999999999 999999999888733
No 233
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.49 E-value=1.8e-06 Score=94.31 Aligned_cols=62 Identities=11% Similarity=0.173 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHcCC--CcEEEcceEEEEEEec-----CCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006387 214 REIERALLEAVVSDP--NISVFEHHFAIDLLTT-----LDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~--gv~i~~~~~v~~l~~~-----~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 283 (647)
..+...|.+.+.+.. +++++.+++++++..+ +++ ..+.+.. .+|+ +++|+.||-|.|..+.+
T Consensus 117 ~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~---~~v~v~~---~~g~--~i~a~llVgADG~~S~v 185 (437)
T TIGR01989 117 DNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNS---NWVHITL---SDGQ--VLYTKLLIGADGSNSNV 185 (437)
T ss_pred HHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCC---CceEEEE---cCCC--EEEeeEEEEecCCCChh
Confidence 456778888887765 6999999999999752 111 1122332 3454 69999999999988754
No 234
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.49 E-value=3.4e-06 Score=88.99 Aligned_cols=33 Identities=18% Similarity=0.440 Sum_probs=29.5
Q ss_pred cCEEEECcchHHHHHHHHHHhc--C-CeEEEEecCC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEP 121 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~--G-~V~llEk~~~ 121 (647)
..|||||||.+|+.+|..+.+. + +|+|||+...
T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~ 39 (405)
T COG1252 4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDY 39 (405)
T ss_pred ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCc
Confidence 4699999999999999999986 5 8999999864
No 235
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.48 E-value=1.9e-06 Score=92.90 Aligned_cols=60 Identities=20% Similarity=0.137 Sum_probs=47.8
Q ss_pred chHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006387 212 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 212 ~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 282 (647)
.+..+..+|...+.+ .|+.|++++.|++|....+ ++.||.. .-| .|++..||.|||=+++
T Consensus 185 DP~~lC~ala~~A~~-~GA~viE~cpV~~i~~~~~----~~~gVeT---~~G---~iet~~~VNaaGvWAr 244 (856)
T KOG2844|consen 185 DPAGLCQALARAASA-LGALVIENCPVTGLHVETD----KFGGVET---PHG---SIETECVVNAAGVWAR 244 (856)
T ss_pred CHHHHHHHHHHHHHh-cCcEEEecCCcceEEeecC----Cccceec---cCc---ceecceEEechhHHHH
Confidence 467788899988887 4999999999999998744 3446644 345 4899999999997765
No 236
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.44 E-value=5.2e-06 Score=94.54 Aligned_cols=67 Identities=13% Similarity=0.126 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHcCC-CcEEEcceEEEEEEecCCCCCCeEEEEEEEec---CCCeEEEEEcCeEEECCCccccc
Q 006387 215 EIERALLEAVVSDP-NISVFEHHFAIDLLTTLDGPDAVCHGVDTLNV---ETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 215 ~~~~~L~~~~~~~~-gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~---~~g~~~~i~Ak~VVlAtGg~~~~ 283 (647)
.+...|.+.+.+.+ ++++..+++++++..++++. ..| -|.+.+. .+|+..+++||.||-|.|+.+.+
T Consensus 142 ~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~-~~V-~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~V 212 (634)
T PRK08294 142 RVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGE-YPV-TVTLRRTDGEHEGEEETVRAKYVVGCDGARSRV 212 (634)
T ss_pred HHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCC-CCE-EEEEEECCCCCCCceEEEEeCEEEECCCCchHH
Confidence 46677777776642 26788899999998763220 112 3444443 14655689999999999988754
No 237
>PRK07588 hypothetical protein; Provisional
Probab=98.43 E-value=2.4e-06 Score=92.06 Aligned_cols=32 Identities=25% Similarity=0.433 Sum_probs=30.4
Q ss_pred CEEEECcchHHHHHHHHHHhcC-CeEEEEecCC
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~ 121 (647)
||+|||||++|+++|+.|++.| +|+|+||.+.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 8999999999999999999999 9999999864
No 238
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.41 E-value=1.4e-05 Score=88.87 Aligned_cols=62 Identities=13% Similarity=0.066 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCc
Q 006387 213 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGG 279 (647)
Q Consensus 213 g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg 279 (647)
-..+..+|.+.+++ .|++|+.++.|++|..+ ++ ++.|+.+.+..+++...+.||.||+++-.
T Consensus 231 ~~~l~~aL~~~~~~-~G~~i~~~~~V~~I~~~-~~---~~~gv~~~~~~~~~~~~~~ad~VI~~~~~ 292 (492)
T TIGR02733 231 MQTLSDRLVEALKR-DGGNLLTGQRVTAIHTK-GG---RAGWVVVVDSRKQEDLNVKADDVVANLPP 292 (492)
T ss_pred HHHHHHHHHHHHHh-cCCEEeCCceEEEEEEe-CC---eEEEEEEecCCCCceEEEECCEEEECCCH
Confidence 35688899999987 49999999999999987 44 57788765532333346899999999875
No 239
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.41 E-value=7.7e-06 Score=86.10 Aligned_cols=64 Identities=20% Similarity=0.297 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccc
Q 006387 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 281 (647)
-.+.+.|.+.+.+.+|++++.+++|++|.+..++ -.-|.+.|..+|+...++|+.|++.+||.+
T Consensus 181 G~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg----~W~v~~~~~~~~~~~~v~a~FVfvGAGG~a 244 (488)
T PF06039_consen 181 GALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDG----RWEVKVKDLKTGEKREVRAKFVFVGAGGGA 244 (488)
T ss_pred HHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCC----CEEEEEEecCCCCeEEEECCEEEECCchHh
Confidence 4577888888888779999999999999998665 334677787888889999999999999876
No 240
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.39 E-value=1.5e-05 Score=87.59 Aligned_cols=62 Identities=11% Similarity=0.037 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCc
Q 006387 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGG 279 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg 279 (647)
..+...|.+.+.+. |++|..++.|++|..++++ +++|+.+.+...++..++.|+.||+|+..
T Consensus 213 ~~l~~~l~~~l~~~-g~~i~l~~~V~~I~~~~~~---~v~~v~~~~~~~~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 213 ERLCQPIVDYITSR-GGEVRLNSRLKEIVLNEDG---SVKHFVLADGEGQRRFEVTADAYVSAMPV 274 (453)
T ss_pred HHHHHHHHHHHHhc-CCEEeCCCeeEEEEECCCC---CEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence 45778888888774 8999999999999876455 68888875432223336899999999964
No 241
>PRK07208 hypothetical protein; Provisional
Probab=98.38 E-value=1.3e-05 Score=88.92 Aligned_cols=62 Identities=11% Similarity=-0.071 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcc
Q 006387 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGA 280 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~ 280 (647)
..+...|.+.+.+. |++|+.+++|++|..++++ .+.++.. +..+|+...+.|+.||.|+-..
T Consensus 218 ~~l~~~L~~~l~~~-g~~i~~~~~V~~I~~~~~~---~v~~~~~-~~~~g~~~~~~ad~VI~a~p~~ 279 (479)
T PRK07208 218 GQLWETAAEKLEAL-GGKVVLNAKVVGLHHDGDG---RIAVVVV-NDTDGTEETVTADQVISSMPLR 279 (479)
T ss_pred chHHHHHHHHHHHc-CCEEEeCCEEEEEEEcCCc---EEEEEEE-EcCCCCEEEEEcCEEEECCCHH
Confidence 35778888888774 8999999999999987544 4444433 3234555568999999998743
No 242
>PRK06753 hypothetical protein; Provisional
Probab=98.37 E-value=5.1e-06 Score=88.92 Aligned_cols=33 Identities=33% Similarity=0.572 Sum_probs=31.2
Q ss_pred CEEEECcchHHHHHHHHHHhcC-CeEEEEecCCC
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH 122 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~ 122 (647)
||+|||||+||+++|+.|++.| +|+|+||.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~ 35 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 7999999999999999999999 99999998754
No 243
>PRK05868 hypothetical protein; Validated
Probab=98.35 E-value=6.7e-06 Score=87.90 Aligned_cols=33 Identities=27% Similarity=0.424 Sum_probs=31.0
Q ss_pred CEEEECcchHHHHHHHHHHhcC-CeEEEEecCCC
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH 122 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~ 122 (647)
||+|||||++|+++|+.|++.| +|+|+|+.+..
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 8999999999999999999999 99999998653
No 244
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.33 E-value=1.5e-05 Score=79.40 Aligned_cols=59 Identities=14% Similarity=0.036 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcc
Q 006387 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGA 280 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~ 280 (647)
..+-..|..+..+ .|..++.+-.|.+.... ++ +|..+...+ ...+.++|+..|||||+|
T Consensus 258 iRl~~~L~~~f~~-~Gg~~m~Gd~V~~a~~~-~~---~v~~i~trn---~~diP~~a~~~VLAsGsf 316 (421)
T COG3075 258 IRLHNQLQRQFEQ-LGGLWMPGDEVKKATCK-GG---RVTEIYTRN---HADIPLRADFYVLASGSF 316 (421)
T ss_pred hhHHHHHHHHHHH-cCceEecCCceeeeeee-CC---eEEEEEecc---cccCCCChhHeeeecccc
Confidence 4455667777776 48889999999988876 44 788777653 444679999999999976
No 245
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.30 E-value=1.5e-05 Score=89.92 Aligned_cols=35 Identities=37% Similarity=0.505 Sum_probs=32.6
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
....+|+|||||++||++|+.|++.| +|+|+||.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 45689999999999999999999999 999999975
No 246
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.30 E-value=1.4e-06 Score=84.55 Aligned_cols=35 Identities=29% Similarity=0.538 Sum_probs=32.6
Q ss_pred CEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCC
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES 124 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G 124 (647)
+|+|||+|+||++||+.|++.| +|+|+||+.-.+|
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGG 38 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGG 38 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCccc
Confidence 6999999999999999999999 9999999886655
No 247
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=98.29 E-value=6.1e-06 Score=90.03 Aligned_cols=61 Identities=18% Similarity=0.305 Sum_probs=47.5
Q ss_pred HHHHHHHHc-CCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEc-CeEEECCCccc
Q 006387 218 RALLEAVVS-DPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFIS-KVTLLASGGAG 281 (647)
Q Consensus 218 ~~L~~~~~~-~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~A-k~VVlAtGg~~ 281 (647)
+++++.+.. ++|+.+...+.|+.++.|..+ ++..||.... +.|+.++++| |-|||+.|.++
T Consensus 256 ~a~l~~~~~~R~NL~~~~~~~vtrvl~D~~~--~~a~gv~~~~-~~~~~~~v~a~kEVILSAGAi~ 318 (623)
T KOG1238|consen 256 KAYLKPIRLTRPNLHISRNAAVTRVLIDPAG--KRAKGVEFVR-DGGKEHTVKARKEVILSAGAIN 318 (623)
T ss_pred hhhhhhhhccCccccccccceEEEEEEcCCC--ceEEEEEEEe-cCceeeeecccceEEEeccccC
Confidence 455555555 578999999999999998666 4788888753 3367788888 78999999876
No 248
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.29 E-value=4.4e-05 Score=85.18 Aligned_cols=56 Identities=13% Similarity=0.026 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCc
Q 006387 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGG 279 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg 279 (647)
..+..+|.+.+++. |++|+.++.|+++..+ ++ ++++|.. .+|+ .+.|+.||+|++.
T Consensus 219 ~~l~~al~~~~~~~-G~~i~~~~~V~~i~~~-~~---~~~~V~~---~~g~--~~~ad~VI~a~~~ 274 (502)
T TIGR02734 219 GALVAAMAKLAEDL-GGELRLNAEVIRIETE-GG---RATAVHL---ADGE--RLDADAVVSNADL 274 (502)
T ss_pred HHHHHHHHHHHHHC-CCEEEECCeEEEEEee-CC---EEEEEEE---CCCC--EEECCEEEECCcH
Confidence 56788898888874 9999999999999876 44 6777765 3454 4789999999884
No 249
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.27 E-value=1e-05 Score=90.36 Aligned_cols=66 Identities=18% Similarity=0.141 Sum_probs=55.9
Q ss_pred chHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006387 212 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 212 ~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 282 (647)
.+..++..+.+.+.+. |++++++++|+++..+ ++ ++.||.+.++.+|+...|+|+.||+|+|.++.
T Consensus 126 dp~~l~~al~~~A~~~-Ga~i~~~t~V~~i~~~-~~---~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~ 191 (516)
T TIGR03377 126 DPFRLVAANVLDAQEH-GARIFTYTKVTGLIRE-GG---RVTGVKVEDHKTGEEERIEAQVVINAAGIWAG 191 (516)
T ss_pred CHHHHHHHHHHHHHHc-CCEEEcCcEEEEEEEE-CC---EEEEEEEEEcCCCcEEEEEcCEEEECCCcchH
Confidence 4677888898888874 9999999999999876 44 68899888777787778999999999998763
No 250
>PLN02612 phytoene desaturase
Probab=98.19 E-value=5.6e-05 Score=85.14 Aligned_cols=57 Identities=11% Similarity=-0.067 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCc
Q 006387 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGG 279 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg 279 (647)
..+...|.+.+++. |++|..++.|++|..++++ ++.++.+ .+|+ .+.|+.||+|+..
T Consensus 308 ~~l~~~l~~~l~~~-G~~I~l~~~V~~I~~~~~g---~v~~v~~---~~G~--~~~ad~VI~a~p~ 364 (567)
T PLN02612 308 ERLCMPIVDHFQSL-GGEVRLNSRIKKIELNDDG---TVKHFLL---TNGS--VVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHHHhc-CCEEEeCCeeeEEEECCCC---cEEEEEE---CCCc--EEECCEEEECCCH
Confidence 46778888888774 9999999999999986555 5666655 2454 5899999999863
No 251
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.19 E-value=1.9e-05 Score=85.73 Aligned_cols=33 Identities=33% Similarity=0.640 Sum_probs=30.0
Q ss_pred CEEEECcchHHHHHHHHHHhcC--CeEEEEecCCC
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPH 122 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~~~~ 122 (647)
.|+|||||++||++|+.|++.| +|+|+||.+..
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~ 36 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF 36 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC
Confidence 5999999999999999999986 89999997643
No 252
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.19 E-value=1.9e-05 Score=85.96 Aligned_cols=39 Identities=23% Similarity=0.422 Sum_probs=35.1
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-C-eEEEEecCCCCC
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-T-VAVITKAEPHES 124 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~-V~llEk~~~~~G 124 (647)
...+||+|||||++|+++|++|.+.| . ++|+||+...+|
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg 46 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGG 46 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCC
Confidence 45799999999999999999999999 6 999999986554
No 253
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.17 E-value=5.1e-06 Score=81.22 Aligned_cols=169 Identities=14% Similarity=0.141 Sum_probs=97.9
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC-------CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCH
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG-------TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDD 160 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G-------~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~ 160 (647)
...|+|||||+.|.++|+.|++.+ .|+|+|+..+.+|+|..++|-..-+ |++
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~w---------------------c~~ 68 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKW---------------------CQP 68 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhh---------------------hCC
Confidence 367999999999999999999864 5899999999999887775533321 222
Q ss_pred HHHHHHHHHhHHHHHHH-------HHcCCCcc------cC-CCCCccccccCCccccc--------ee---eccCCchHH
Q 006387 161 ETVRVVCTEGPDRIREL-------IAIGASFD------RG-EDGNLHLAREGGHSHHR--------IV---HAADMTGRE 215 (647)
Q Consensus 161 ~~~~~~~~~~~~~i~~l-------~~~Gv~~~------~~-~~g~~~~~~~gg~~~~r--------~~---~~~~~~g~~ 215 (647)
+.+..++..+....+.| .+||+.-- .+ ++-...-...|-....| +- .......+.
T Consensus 69 s~~~~La~lsfkLh~~LsdeydGvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~l 148 (380)
T KOG2852|consen 69 SIIQPLATLSFKLHEELSDEYDGVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYL 148 (380)
T ss_pred cccchhhHHHHHHHHHHHHhhcCcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHH
Confidence 22222222222222222 22332210 00 00000000011000000 00 012234678
Q ss_pred HHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006387 216 IERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 216 ~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 283 (647)
+.+.++..++++.||+++.+ .|.++. ++.+ ++.++.... ..+..+...+..||+|.|.+...
T Consensus 149 Fc~~i~sea~k~~~V~lv~G-kv~ev~-dEk~---r~n~v~~ae-~~~ti~~~d~~~ivvsaGPWTsk 210 (380)
T KOG2852|consen 149 FCHFILSEAEKRGGVKLVFG-KVKEVS-DEKH---RINSVPKAE-AEDTIIKADVHKIVVSAGPWTSK 210 (380)
T ss_pred HHHHHHHHHHhhcCeEEEEe-eeEEee-cccc---cccccchhh-hcCceEEeeeeEEEEecCCCchh
Confidence 99999999999888999998 577776 3344 676665432 12334456788999999988753
No 254
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.16 E-value=1.2e-05 Score=74.64 Aligned_cols=30 Identities=20% Similarity=0.386 Sum_probs=26.5
Q ss_pred EEECcchHHHHHHHHHHhc-----C-CeEEEEecCC
Q 006387 92 SVIGSGVAGLCYALEVAKH-----G-TVAVITKAEP 121 (647)
Q Consensus 92 lVIGgG~AGl~AA~~aa~~-----G-~V~llEk~~~ 121 (647)
+|||+|++|++++.+|.+. . +|+|+|+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 4999999999999999876 3 8999999766
No 255
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.15 E-value=2.2e-06 Score=67.26 Aligned_cols=35 Identities=34% Similarity=0.564 Sum_probs=31.1
Q ss_pred EECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCcc
Q 006387 93 VIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTN 127 (647)
Q Consensus 93 VIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~ 127 (647)
|||||++||++|+.|++.| +|+|+|+....+|...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 36 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRAR 36 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGC
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCccee
Confidence 8999999999999999999 9999999998877553
No 256
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.09 E-value=6.1e-05 Score=82.40 Aligned_cols=61 Identities=16% Similarity=0.183 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccC
Q 006387 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIY 284 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~ 284 (647)
..+-..|.+.+.+. ||+++.++ |+++..+++| .|.+|.. .+|+ +|+||.||.|||-.+.+-
T Consensus 154 ~~fd~~L~~~A~~~-Gv~~~~g~-V~~v~~~~~g---~i~~v~~---~~g~--~i~ad~~IDASG~~s~L~ 214 (454)
T PF04820_consen 154 AKFDQFLRRHAEER-GVEVIEGT-VVDVELDEDG---RITAVRL---DDGR--TIEADFFIDASGRRSLLA 214 (454)
T ss_dssp HHHHHHHHHHHHHT-T-EEEET--EEEEEE-TTS---EEEEEEE---TTSE--EEEESEEEE-SGGG-CCC
T ss_pred HHHHHHHHHHHhcC-CCEEEeCE-EEEEEEcCCC---CEEEEEE---CCCC--EEEEeEEEECCCccchhh
Confidence 56777888888885 99999985 7788777666 6777765 3454 699999999999666443
No 257
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.06 E-value=0.00011 Score=81.16 Aligned_cols=66 Identities=8% Similarity=0.010 Sum_probs=45.6
Q ss_pred chHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCC-eEEEEEEEecCCCeEEEEEcCeEEECCCcc
Q 006387 212 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDA-VCHGVDTLNVETQEVVRFISKVTLLASGGA 280 (647)
Q Consensus 212 ~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~-~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~ 280 (647)
.+..+...|.+.+++ .|++|+.++.|++|..++++.+. +++++.+.+. ++ ...+.||+||+|+...
T Consensus 217 ~~~~l~~pl~~~L~~-~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g-~~-~~~~~aD~VVlA~p~~ 283 (474)
T TIGR02732 217 PDKYLTKPILEYIEA-RGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKP-EG-KKVIKADAYVAACDVP 283 (474)
T ss_pred cchhHHHHHHHHHHH-CCCEEECCCEEEEEEEecCCCCceeEEEEEEecC-Cc-ceEEECCEEEECCChH
Confidence 344566778888888 49999999999999876321001 3677766321 11 1258899999999854
No 258
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.06 E-value=2.8e-05 Score=80.52 Aligned_cols=37 Identities=27% Similarity=0.522 Sum_probs=33.5
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESN 125 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~ 125 (647)
-+|+|||||++|+++|+.+.++| +|+|+|+...+.+.
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~ 40 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGE 40 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccC
Confidence 58999999999999999999999 99999998766554
No 259
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=98.03 E-value=4.2e-05 Score=84.33 Aligned_cols=48 Identities=17% Similarity=0.108 Sum_probs=36.2
Q ss_pred ceEECCCCCcccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHH
Q 006387 438 GVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSID 490 (647)
Q Consensus 438 Gi~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~ 490 (647)
||.||+.+||++|.+||+|||+ -..|.++ +-.+.++-.++.++.|+..
T Consensus 258 GIvvnd~mqTsdpdIYAvGEca--e~~g~~y---GLVaP~yeq~~v~a~hl~~ 305 (793)
T COG1251 258 GIVVNDYMQTSDPDIYAVGECA--EHRGKVY---GLVAPLYEQAKVLADHLCG 305 (793)
T ss_pred CeeecccccccCCCeeehhhHH--HhcCccc---eehhHHHHHHHHHHHHhcc
Confidence 8999999999999999999998 3334332 1245666777777777654
No 260
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.03 E-value=3.7e-05 Score=81.98 Aligned_cols=39 Identities=26% Similarity=0.447 Sum_probs=34.0
Q ss_pred CEEEECcchHHHHHHHHHHhc--C-CeEEEEecCCCCCCccc
Q 006387 90 DFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEPHESNTNY 128 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~--G-~V~llEk~~~~~G~t~~ 128 (647)
||+|||||+||+++|+.|++. | +|+|+|+.+..+++..|
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw 42 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTW 42 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccc
Confidence 899999999999999999987 8 99999998866654433
No 261
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.98 E-value=1.4e-05 Score=83.58 Aligned_cols=39 Identities=36% Similarity=0.445 Sum_probs=35.3
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCC
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESN 125 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~ 125 (647)
..-++||||||+||+.||+.|++.| +|.|+||.+..||.
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGr 162 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGR 162 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccccc
Confidence 3457999999999999999999999 99999999987763
No 262
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.92 E-value=3.6e-05 Score=82.95 Aligned_cols=37 Identities=35% Similarity=0.509 Sum_probs=33.9
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCC
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES 124 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G 124 (647)
.-+|+|||+|+|||.+|..|.+.| .|+++||.+..||
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGG 43 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGG 43 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccc
Confidence 469999999999999999999999 9999999887654
No 263
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.87 E-value=0.00021 Score=58.04 Aligned_cols=32 Identities=31% Similarity=0.509 Sum_probs=29.8
Q ss_pred EEEECcchHHHHHHHHHHhcC-CeEEEEecCCC
Q 006387 91 FSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH 122 (647)
Q Consensus 91 VlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~ 122 (647)
|+|||||..|+-.|..+++.| +|+|+++.+..
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 799999999999999999999 99999997753
No 264
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.86 E-value=8.2e-05 Score=86.84 Aligned_cols=32 Identities=34% Similarity=0.575 Sum_probs=30.0
Q ss_pred CEEEECcchHHHHHHHHHHhc--C-CeEEEEecCC
Q 006387 90 DFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEP 121 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~--G-~V~llEk~~~ 121 (647)
+|+|||||+|||++|+.|++. | +|+|+||.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 699999999999999999998 8 9999999874
No 265
>PLN02487 zeta-carotene desaturase
Probab=97.78 E-value=0.00045 Score=77.30 Aligned_cols=73 Identities=5% Similarity=-0.014 Sum_probs=51.1
Q ss_pred eeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCC-CCeEEEEEEEecCCCeEEEEEcCeEEECCCcc
Q 006387 205 IVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGP-DAVCHGVDTLNVETQEVVRFISKVTLLASGGA 280 (647)
Q Consensus 205 ~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~-~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~ 280 (647)
..++....+..+...+.+.++++ |++|+.++.|.+|..+.++. ..++.|+.+.+ .++...+.||.||+|++-.
T Consensus 286 l~~~~Gg~~~~l~~pl~~~L~~~-Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~--~~~~~~~~aD~VV~A~p~~ 359 (569)
T PLN02487 286 LRMLKGSPDVRLSGPIAKYITDR-GGRFHLRWGCREILYDKSPDGETYVTGLKVSK--ATEKEIVKADAYVAACDVP 359 (569)
T ss_pred eeecCCCchHHHHHHHHHHHHHc-CCEEEeCCceEEEEEecCCCCceeEEEEEEec--CCCceEEECCEEEECCCHH
Confidence 33444444556888899999885 99999999999999873211 11478887631 2233358899999999954
No 266
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.75 E-value=0.0003 Score=78.22 Aligned_cols=35 Identities=29% Similarity=0.471 Sum_probs=30.5
Q ss_pred CEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCC
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES 124 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G 124 (647)
.|+|||||++||+||..|.+.| +|+++||....||
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG 38 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGG 38 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSG
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCc
Confidence 4999999999999999999999 9999999987755
No 267
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=97.73 E-value=0.00016 Score=75.27 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcc
Q 006387 215 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGA 280 (647)
Q Consensus 215 ~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~ 280 (647)
.+..++.+.+.+. |.+|++...|.+++.| +| +++||.+. +|. .+++|.||--++-+
T Consensus 265 avs~aia~~~~~~-GaeI~tka~Vq~Illd-~g---ka~GV~L~---dG~--ev~sk~VvSNAt~~ 320 (561)
T KOG4254|consen 265 AVSFAIAEGAKRA-GAEIFTKATVQSILLD-SG---KAVGVRLA---DGT--EVRSKIVVSNATPW 320 (561)
T ss_pred HHHHHHHHHHHhc-cceeeehhhhhheecc-CC---eEEEEEec---CCc--EEEeeeeecCCchH
Confidence 4667788888774 9999999999999998 57 89999885 464 47888888777654
No 268
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.72 E-value=3.2e-05 Score=81.83 Aligned_cols=40 Identities=28% Similarity=0.468 Sum_probs=35.8
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccc
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNY 128 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~ 128 (647)
+||+|||||++|+++|..|++.| +|+|+|+....||.+.+
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~ 42 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYD 42 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceee
Confidence 69999999999999999999999 99999998877775443
No 269
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.70 E-value=0.00091 Score=71.88 Aligned_cols=35 Identities=29% Similarity=0.534 Sum_probs=32.0
Q ss_pred CEEEECcchHHHHHHHHHHhcC---CeEEEEecCCCCC
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG---TVAVITKAEPHES 124 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G---~V~llEk~~~~~G 124 (647)
.|+|||||+|||+||++|++.+ .|+|+|+++..||
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG 39 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGG 39 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCc
Confidence 4899999999999999999998 7999999987766
No 270
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.67 E-value=0.00092 Score=71.74 Aligned_cols=60 Identities=17% Similarity=0.099 Sum_probs=44.8
Q ss_pred chHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006387 212 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 212 ~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 283 (647)
....++..|.+.+.+ |+++++++.|+++..+ ++ . .++. +.+|. .++|+.||+|+|.++..
T Consensus 133 dp~~~~~~l~~~~~~--G~~i~~~~~V~~i~~~-~~---~-~~v~---t~~g~--~~~a~~vV~a~G~~~~~ 192 (381)
T TIGR03197 133 SPPQLCRALLAHAGI--RLTLHFNTEITSLERD-GE---G-WQLL---DANGE--VIAASVVVLANGAQAGQ 192 (381)
T ss_pred ChHHHHHHHHhccCC--CcEEEeCCEEEEEEEc-CC---e-EEEE---eCCCC--EEEcCEEEEcCCccccc
Confidence 457788889888865 8999999999999875 33 2 2332 23453 47999999999988753
No 271
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.66 E-value=0.00046 Score=72.54 Aligned_cols=62 Identities=16% Similarity=0.151 Sum_probs=48.8
Q ss_pred chHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccC
Q 006387 212 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIY 284 (647)
Q Consensus 212 ~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~ 284 (647)
....++..|.+.+.+. |++++.+++|+++..+ ++ ++.+|.. ..| .++|+.||+|+|.+...+
T Consensus 135 ~p~~l~~~l~~~~~~~-g~~~~~~~~v~~i~~~-~~---~~~~v~~---~~g---~~~a~~vV~a~G~~~~~l 196 (337)
T TIGR02352 135 DPRALLKALEKALEKL-GVEIIEHTEVQHIEIR-GE---KVTAIVT---PSG---DVQADQVVLAAGAWAGEL 196 (337)
T ss_pred ChHHHHHHHHHHHHHc-CCEEEccceEEEEEee-CC---EEEEEEc---CCC---EEECCEEEEcCChhhhhc
Confidence 4578889999999885 9999999999999875 44 5666643 344 589999999999887543
No 272
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.65 E-value=0.0005 Score=76.00 Aligned_cols=33 Identities=33% Similarity=0.565 Sum_probs=30.2
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecCC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~ 121 (647)
-.|+|||||.+|+-+|..+++.| +|+|+++.+.
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~ 214 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADR 214 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc
Confidence 47999999999999999999999 9999998753
No 273
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.65 E-value=5.4e-05 Score=83.07 Aligned_cols=40 Identities=30% Similarity=0.378 Sum_probs=36.5
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCC
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESN 125 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~ 125 (647)
....+|+|||||+||++||..|.+.| +|+|+|.+...||.
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGR 53 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGR 53 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCce
Confidence 44689999999999999999999999 99999999887773
No 274
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.62 E-value=0.00038 Score=73.14 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=27.2
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC--CeEEEEecCC
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEP 121 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~~~ 121 (647)
.+|+|+||.||++|+.|+.|.+.+ +++.+|+.+.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~ 37 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS 37 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 489999999999999999999876 9999998764
No 275
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.57 E-value=8.1e-05 Score=74.33 Aligned_cols=40 Identities=28% Similarity=0.478 Sum_probs=37.6
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccc
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNY 128 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~ 128 (647)
+|.||||+|.+|+..|..|++.| +|+||||++..||+..-
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYd 42 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYD 42 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCcccc
Confidence 79999999999999999999999 99999999999998764
No 276
>PLN02576 protoporphyrinogen oxidase
Probab=97.57 E-value=7.4e-05 Score=83.20 Aligned_cols=40 Identities=33% Similarity=0.467 Sum_probs=36.1
Q ss_pred cccCEEEECcchHHHHHHHHHHhc-C-CeEEEEecCCCCCCc
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKH-G-TVAVITKAEPHESNT 126 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~-G-~V~llEk~~~~~G~t 126 (647)
.++||+|||||++||+||+.|++. | +|+|+|+....||..
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~ 52 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNI 52 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCce
Confidence 457999999999999999999999 9 999999998877743
No 277
>PRK07233 hypothetical protein; Provisional
Probab=97.57 E-value=7.7e-05 Score=81.47 Aligned_cols=37 Identities=30% Similarity=0.537 Sum_probs=34.4
Q ss_pred CEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCc
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT 126 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t 126 (647)
+|+|||||++||+||+.|+++| +|+|+|+....||.+
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~ 38 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLA 38 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCce
Confidence 5899999999999999999999 999999999888754
No 278
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.52 E-value=7.6e-05 Score=80.93 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=37.5
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCcc
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTN 127 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~ 127 (647)
.+|||||||+|.+|+.+|..|++.| +|+++|++...||...
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~a 44 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESA 44 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccc
Confidence 4699999999999999999999999 9999999998877543
No 279
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.52 E-value=0.00015 Score=79.22 Aligned_cols=53 Identities=21% Similarity=0.178 Sum_probs=34.2
Q ss_pred cCceEECCCCCcccCceeecccccCCCC---CCCCccchhhhHHHHHHHHHHHHHHHH
Q 006387 436 CGGVRAGLQGETNVRGLYVAGEVACTGL---HGANRLASNSLLEALVFARRAVQPSID 490 (647)
Q Consensus 436 ~GGi~vD~~~~T~ipGLyAaGe~a~~g~---~Ga~rl~g~sl~~a~v~G~~Ag~~a~~ 490 (647)
.|+|.||++++|++|++||+|||+ +.. .|...... ....|.-.|+.|+++++.
T Consensus 248 ~G~i~vd~~~~t~~~~Vya~GD~~-~~~~~~~~~~~~~~-~~~~A~~~g~~~a~ni~g 303 (427)
T TIGR03385 248 TGAIWVNEKFQTSVPNIYAAGDVA-ESHNIITKKPAWVP-LAWGANKMGRIAGENIAG 303 (427)
T ss_pred CCCEEECCCcEeCCCCEEEeeeeE-EeeeccCCCceeee-chHHHHHHHHHHHHHhcC
Confidence 478999999999999999999997 221 11111001 112355567777776643
No 280
>PLN02268 probable polyamine oxidase
Probab=97.51 E-value=9.5e-05 Score=80.88 Aligned_cols=39 Identities=21% Similarity=0.337 Sum_probs=35.4
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCcc
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTN 127 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~ 127 (647)
.+|+|||||+|||+||+.|.+.| +|+|+|+.+..||...
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~ 40 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVH 40 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceee
Confidence 37999999999999999999999 9999999998887543
No 281
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.48 E-value=0.0012 Score=72.80 Aligned_cols=33 Identities=33% Similarity=0.485 Sum_probs=30.3
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecCC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~ 121 (647)
-+|+|||||.+|+.+|..+++.| +|+|+|+.+.
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 204 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDR 204 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCC
Confidence 47999999999999999999999 9999998653
No 282
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.48 E-value=0.0013 Score=72.64 Aligned_cols=33 Identities=27% Similarity=0.417 Sum_probs=29.9
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecCC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~ 121 (647)
-.|+|||+|..|+-+|..+++.| +|+++++.+.
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 206 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPR 206 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 36999999999999999999999 9999998653
No 283
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.47 E-value=0.00011 Score=80.91 Aligned_cols=38 Identities=21% Similarity=0.456 Sum_probs=34.9
Q ss_pred cCEEEECcchHHHHHHHHHHhc----C-CeEEEEecCCCCCCc
Q 006387 89 FDFSVIGSGVAGLCYALEVAKH----G-TVAVITKAEPHESNT 126 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~----G-~V~llEk~~~~~G~t 126 (647)
.||+|||||+|||+||+.|+++ | +|+|+|+.+..||..
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~ 45 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKI 45 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceE
Confidence 5899999999999999999998 9 999999998877743
No 284
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.46 E-value=0.0011 Score=74.10 Aligned_cols=47 Identities=11% Similarity=0.225 Sum_probs=37.7
Q ss_pred CCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCC
Q 006387 228 PNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASG 278 (647)
Q Consensus 228 ~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtG 278 (647)
.||+++.++.++++..+ ++ ++.++.+.+..+++...+.++.||+|+|
T Consensus 401 ~gV~i~~~~~v~~i~~~-~~---~v~~v~~~~~~~~~~~~i~~D~vi~a~G 447 (515)
T TIGR03140 401 PNVDILTSAQTTEIVGD-GD---KVTGIRYQDRNSGEEKQLDLDGVFVQIG 447 (515)
T ss_pred CCCEEEECCeeEEEEcC-CC---EEEEEEEEECCCCcEEEEEcCEEEEEeC
Confidence 49999999999998754 34 6778877665556666899999999998
No 285
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.46 E-value=0.0016 Score=71.92 Aligned_cols=32 Identities=31% Similarity=0.423 Sum_probs=29.4
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
-.|+|||+|..|+-.|..+++.| +|+|+|+.+
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~ 207 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLD 207 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 46999999999999999999999 999999865
No 286
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.46 E-value=0.0012 Score=73.87 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=40.7
Q ss_pred HHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCC
Q 006387 224 VVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASG 278 (647)
Q Consensus 224 ~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtG 278 (647)
+.+..||+++.++.++++..+ ++ ++.++.+.+..+|+..++.++.|++|+|
T Consensus 396 l~~~~gI~i~~~~~v~~i~~~-~g---~v~~v~~~~~~~g~~~~i~~D~v~~~~G 446 (517)
T PRK15317 396 LRSLPNVTIITNAQTTEVTGD-GD---KVTGLTYKDRTTGEEHHLELEGVFVQIG 446 (517)
T ss_pred HhcCCCcEEEECcEEEEEEcC-CC---cEEEEEEEECCCCcEEEEEcCEEEEeEC
Confidence 333359999999999999854 34 6888888776667767899999999998
No 287
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.44 E-value=0.0023 Score=67.27 Aligned_cols=140 Identities=16% Similarity=0.165 Sum_probs=76.6
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC---CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHH
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG---TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETV 163 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G---~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~ 163 (647)
....|+|||||-++.-.++.|.+.+ +|.++-|+....- .++++ -.....+|+.+
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~--------------~d~s~---------f~ne~f~P~~v 245 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFP--------------MDDSP---------FVNEIFSPEYV 245 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB------------------C---------CHHGGGSHHHH
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCC--------------Ccccc---------chhhhcCchhh
Confidence 4568999999999999999999887 6888988653210 01110 01123566666
Q ss_pred HHHHHHhHHHHHHHHH-cC-CCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHH-----HHHcCCCcEEEcce
Q 006387 164 RVVCTEGPDRIRELIA-IG-ASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLE-----AVVSDPNISVFEHH 236 (647)
Q Consensus 164 ~~~~~~~~~~i~~l~~-~G-v~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~-----~~~~~~gv~i~~~~ 236 (647)
+.+.....+.-..+.+ .. ... +.-...++..|.+ .+.....++++.++
T Consensus 246 ~~f~~l~~~~R~~~l~~~~~~ny-------------------------~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~ 300 (341)
T PF13434_consen 246 DYFYSLPDEERRELLREQRHTNY-------------------------GGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNT 300 (341)
T ss_dssp HHHHTS-HHHHHHHHHHTGGGTS-------------------------SEB-HHHHHHHHHHHHHHHHHT---SEEETTE
T ss_pred hhhhcCCHHHHHHHHHHhHhhcC-------------------------CCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCC
Confidence 6665544433333322 10 000 0011233333333 34344579999999
Q ss_pred EEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCC
Q 006387 237 FAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASG 278 (647)
Q Consensus 237 ~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtG 278 (647)
+|+++..++++ .+ -+.+.+..+++...+.+|.||+|||
T Consensus 301 ~v~~~~~~~~~---~~-~l~~~~~~~~~~~~~~~D~VilATG 338 (341)
T PF13434_consen 301 EVTSAEQDGDG---GV-RLTLRHRQTGEEETLEVDAVILATG 338 (341)
T ss_dssp EEEEEEEES-S---SE-EEEEEETTT--EEEEEESEEEE---
T ss_pred EEEEEEECCCC---EE-EEEEEECCCCCeEEEecCEEEEcCC
Confidence 99999887644 33 3566777788888999999999999
No 288
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.43 E-value=0.0015 Score=71.93 Aligned_cols=32 Identities=25% Similarity=0.448 Sum_probs=29.5
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
-+|+|||||.+|+-+|..+++.| +|+|+++.+
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~ 203 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAP 203 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 47999999999999999999999 999999865
No 289
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.42 E-value=0.0027 Score=67.66 Aligned_cols=40 Identities=20% Similarity=0.449 Sum_probs=33.2
Q ss_pred cCEEEECcchHHHHHHHHHHhcC----CeEEEEecCCCCCCccc
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG----TVAVITKAEPHESNTNY 128 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G----~V~llEk~~~~~G~t~~ 128 (647)
++|+|||||++|++.|.+|.+.- +|.|+|+....|++..+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaY 45 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAY 45 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccC
Confidence 68999999999999999998753 59999998877654443
No 290
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.40 E-value=0.0022 Score=70.74 Aligned_cols=32 Identities=19% Similarity=0.418 Sum_probs=29.3
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
-.|+|||+|..|+-+|..+++.| +|+|+|+.+
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~ 205 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLD 205 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 37999999999999999999999 999999754
No 291
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.39 E-value=0.0017 Score=71.73 Aligned_cols=32 Identities=28% Similarity=0.547 Sum_probs=29.7
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
-.|+|||+|..|+-+|..+++.| +|+|+++.+
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~ 199 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSD 199 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence 47999999999999999999999 999999865
No 292
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=97.36 E-value=0.00018 Score=73.78 Aligned_cols=54 Identities=28% Similarity=0.402 Sum_probs=40.2
Q ss_pred ecCceEECCCCCcccCceeecccccC--CCCCCCCccchhhhHHHHHHHHHHHHHHHHh
Q 006387 435 MCGGVRAGLQGETNVRGLYVAGEVAC--TGLHGANRLASNSLLEALVFARRAVQPSIDH 491 (647)
Q Consensus 435 ~~GGi~vD~~~~T~ipGLyAaGe~a~--~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~ 491 (647)
..||++||...+ .-.+||++||++| .|+.|+-|+-. --.|+|+||+||++....
T Consensus 464 ~lGGfrvnaeL~-ar~NvwvAGdaacF~D~~LGrRRVeh--hdhavvSGRLAGENMtgA 519 (659)
T KOG1346|consen 464 KLGGFRVNAELK-ARENVWVAGDAACFEDGVLGRRRVEH--HDHAVVSGRLAGENMTGA 519 (659)
T ss_pred ccCcEEeeheee-cccceeeecchhhhhcccccceeccc--cccceeeceecccccccc
Confidence 457777777654 4568999999997 56777777653 346889999999986653
No 293
>PRK06370 mercuric reductase; Validated
Probab=97.36 E-value=0.0021 Score=70.86 Aligned_cols=33 Identities=30% Similarity=0.501 Sum_probs=30.2
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecCC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~ 121 (647)
-.|+|||+|..|+-+|..+++.| +|+|+++.+.
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~ 205 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPR 205 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 47999999999999999999999 9999998653
No 294
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.35 E-value=0.0016 Score=67.18 Aligned_cols=47 Identities=21% Similarity=0.240 Sum_probs=36.8
Q ss_pred CCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCc
Q 006387 228 PNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGG 279 (647)
Q Consensus 228 ~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg 279 (647)
.||+++.++.++++..+ + ++.++.+.+..+++...+.++.||+|+|-
T Consensus 190 ~gv~~~~~~~v~~i~~~--~---~~~~v~~~~~~~g~~~~i~~D~vi~a~G~ 236 (300)
T TIGR01292 190 PNIEFLWNSTVKEIVGD--N---KVEGVKIKNTVTGEEEELKVDGVFIAIGH 236 (300)
T ss_pred CCeEEEeccEEEEEEcc--C---cEEEEEEEecCCCceEEEEccEEEEeeCC
Confidence 49999999999998753 2 46667666555566678999999999993
No 295
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.35 E-value=0.00019 Score=78.85 Aligned_cols=37 Identities=22% Similarity=0.518 Sum_probs=33.1
Q ss_pred CEEEECcchHHHHHHHHHHhcC---CeEEEEecCCCCCCc
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG---TVAVITKAEPHESNT 126 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G---~V~llEk~~~~~G~t 126 (647)
+|+|||||+|||+||+.|++.| +|+|+|+....||..
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~ 41 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKI 41 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceE
Confidence 6999999999999999999966 799999998887743
No 296
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.34 E-value=0.0022 Score=70.30 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=29.4
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
-.|+|||||..|+-+|..+.+.| +|+|+++..
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 37999999999999999999999 999998764
No 297
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.32 E-value=0.00025 Score=74.66 Aligned_cols=43 Identities=28% Similarity=0.421 Sum_probs=38.4
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccc
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNY 128 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~ 128 (647)
...+||||||+|.+||.||++|.+.| +|+|+|.+...+|-+..
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t 48 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLT 48 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEE
Confidence 45799999999999999999999999 99999999888775543
No 298
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.00022 Score=76.35 Aligned_cols=36 Identities=28% Similarity=0.477 Sum_probs=33.9
Q ss_pred CEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCC
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESN 125 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~ 125 (647)
.|+|+|||+|||+||++|+++| +|+|+|+++..||.
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk 38 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGK 38 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCce
Confidence 4899999999999999999999 99999999988873
No 299
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.25 E-value=0.0027 Score=68.03 Aligned_cols=33 Identities=24% Similarity=0.509 Sum_probs=29.9
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecCC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~ 121 (647)
-+|+|||+|..|+-+|..|++.| +|+++++.+.
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~ 175 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAAS 175 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCc
Confidence 46999999999999999999999 9999998653
No 300
>PRK12831 putative oxidoreductase; Provisional
Probab=97.25 E-value=0.003 Score=69.47 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=29.1
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
-.|+|||||..|+-+|..|.+.| +|+|+.+..
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 47999999999999999999999 999998753
No 301
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.24 E-value=0.0041 Score=68.80 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=29.5
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
-.|+|||+|..|+-+|..+++.| +|+|+++.+
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~ 216 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALP 216 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 37999999999999999999999 999999865
No 302
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.23 E-value=0.016 Score=62.32 Aligned_cols=65 Identities=9% Similarity=0.101 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEE--Ec-CeEEECCCccc
Q 006387 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRF--IS-KVTLLASGGAG 281 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i--~A-k~VVlAtGg~~ 281 (647)
..++..|.+-++++ ||++..++.|++|..+.++...++.++... .+|+...| .. |.|++..|+..
T Consensus 207 eSii~Pl~~~L~~~-GV~F~~~t~V~di~~~~~~~~~~~~~i~~~--~~g~~~~i~l~~~DlV~vT~GS~t 274 (500)
T PF06100_consen 207 ESIILPLIRYLKSQ-GVDFRFNTKVTDIDFDITGDKKTATRIHIE--QDGKEETIDLGPDDLVFVTNGSMT 274 (500)
T ss_pred HHHHHHHHHHHHHC-CCEEECCCEEEEEEEEccCCCeeEEEEEEE--cCCCeeEEEeCCCCEEEEECCccc
Confidence 45778888888885 999999999999998744433456666665 34444444 44 67777777553
No 303
>PRK06116 glutathione reductase; Validated
Probab=97.20 E-value=0.0039 Score=68.49 Aligned_cols=33 Identities=15% Similarity=0.307 Sum_probs=29.8
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecCC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~ 121 (647)
-.|+|||+|..|+-.|..+++.| +|+++++++.
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 201 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDA 201 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 47999999999999999999999 9999998653
No 304
>PRK10262 thioredoxin reductase; Provisional
Probab=97.20 E-value=0.004 Score=65.08 Aligned_cols=97 Identities=16% Similarity=0.216 Sum_probs=69.3
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHHHHHH
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 167 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~ 167 (647)
-.|+|||+|..|+-.|..+++.+ +|+++++.+... .++
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~----------------------------------~~~------- 185 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR----------------------------------AEK------- 185 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC----------------------------------CCH-------
Confidence 36999999999999999999999 999999865210 000
Q ss_pred HHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCC
Q 006387 168 TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 247 (647)
Q Consensus 168 ~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g 247 (647)
.+...+.+.+++ .||+++.++.++++..+ ++
T Consensus 186 -----------------------------------------------~~~~~~~~~l~~-~gV~i~~~~~v~~v~~~-~~ 216 (321)
T PRK10262 186 -----------------------------------------------ILIKRLMDKVEN-GNIILHTNRTLEEVTGD-QM 216 (321)
T ss_pred -----------------------------------------------HHHHHHHhhccC-CCeEEEeCCEEEEEEcC-Cc
Confidence 011233344455 59999999999999754 33
Q ss_pred CCCeEEEEEEEecC-CCeEEEEEcCeEEECCC
Q 006387 248 PDAVCHGVDTLNVE-TQEVVRFISKVTLLASG 278 (647)
Q Consensus 248 ~~~~v~Gv~~~~~~-~g~~~~i~Ak~VVlAtG 278 (647)
.+.++.+.+.. +++...+.++.||+|+|
T Consensus 217 ---~~~~v~~~~~~~~~~~~~i~~D~vv~a~G 245 (321)
T PRK10262 217 ---GVTGVRLRDTQNSDNIESLDVAGLFVAIG 245 (321)
T ss_pred ---cEEEEEEEEcCCCCeEEEEECCEEEEEeC
Confidence 46677765432 23445799999999998
No 305
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.18 E-value=0.00092 Score=66.57 Aligned_cols=37 Identities=32% Similarity=0.555 Sum_probs=32.6
Q ss_pred ccccCEEEECcchHHHHHHHHHHhc--C-CeEEEEecCCC
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEPH 122 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~--G-~V~llEk~~~~ 122 (647)
...||.+|||||+.|++.|.++.-+ + +|+|+||....
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~l 85 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSL 85 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhh
Confidence 4579999999999999999999876 6 99999997654
No 306
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.17 E-value=0.00038 Score=76.85 Aligned_cols=37 Identities=24% Similarity=0.382 Sum_probs=32.9
Q ss_pred CEEEECcchHHHHHHHHHHhc------C-CeEEEEecCCCCCCc
Q 006387 90 DFSVIGSGVAGLCYALEVAKH------G-TVAVITKAEPHESNT 126 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~------G-~V~llEk~~~~~G~t 126 (647)
+|+|||||++||+||+.|++. | +|+|+|+.+..||..
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~ 46 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKI 46 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceE
Confidence 699999999999999999985 5 899999998887743
No 307
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.16 E-value=0.0037 Score=67.44 Aligned_cols=33 Identities=27% Similarity=0.392 Sum_probs=30.0
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecCC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~ 121 (647)
-.|+|||+|..|+-+|..|++.| +|+|+++.+.
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ 178 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAAT 178 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 46999999999999999999999 9999998653
No 308
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.14 E-value=0.0046 Score=67.71 Aligned_cols=33 Identities=33% Similarity=0.434 Sum_probs=30.0
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecCC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~ 121 (647)
-.|+|||+|.+|+.+|..+++.| +|+|+++.+.
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 191 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAST 191 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 36999999999999999999999 9999998653
No 309
>PLN02676 polyamine oxidase
Probab=97.12 E-value=0.00053 Score=75.84 Aligned_cols=40 Identities=13% Similarity=0.333 Sum_probs=35.9
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC-C-eEEEEecCCCCCCc
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG-T-VAVITKAEPHESNT 126 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G-~-V~llEk~~~~~G~t 126 (647)
..+||+|||||++||+||+.|++.| + |+|+|+....||..
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~ 66 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRM 66 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcc
Confidence 4689999999999999999999999 5 99999998877744
No 310
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.11 E-value=0.00061 Score=74.66 Aligned_cols=37 Identities=30% Similarity=0.407 Sum_probs=33.2
Q ss_pred ccCEEEECcchHHHHHHHHHHh--cC-CeEEEEecCCCCC
Q 006387 88 YFDFSVIGSGVAGLCYALEVAK--HG-TVAVITKAEPHES 124 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~--~G-~V~llEk~~~~~G 124 (647)
..+|+||||||||+.||..|++ .| +|+|+|+.+.++|
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgG 65 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFG 65 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcc
Confidence 4689999999999999999987 68 9999999987655
No 311
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.11 E-value=0.0044 Score=68.32 Aligned_cols=32 Identities=31% Similarity=0.456 Sum_probs=29.7
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
-.|+|||+|..|+-.|..+++.| +|+|+++.+
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~ 208 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRD 208 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 46999999999999999999999 999999865
No 312
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.08 E-value=0.0059 Score=67.01 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=30.0
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecCC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~ 121 (647)
-.|+|||||..|+-.|..+++.| +|+|+++.+.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 200 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHER 200 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 47999999999999999999999 9999998653
No 313
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.07 E-value=0.00056 Score=73.23 Aligned_cols=33 Identities=30% Similarity=0.376 Sum_probs=30.9
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecCC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~ 121 (647)
+||+|||||.||+.||+.|++.| +|+|+|+.+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 48999999999999999999999 9999998764
No 314
>PLN02529 lysine-specific histone demethylase 1
Probab=97.00 E-value=0.00084 Score=76.90 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=35.5
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCC
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESN 125 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~ 125 (647)
...||+|||+|+||++||..|++.| +|+|+|+....||.
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~ 198 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGR 198 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCc
Confidence 4679999999999999999999999 99999998877664
No 315
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=96.99 E-value=0.0064 Score=66.02 Aligned_cols=98 Identities=18% Similarity=0.163 Sum_probs=70.8
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHHHHHH
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 167 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~ 167 (647)
-.++|||||..|+--|-..++.| +|+|||+.+..-. ..|
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp--------------------------------~~D-------- 213 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP--------------------------------GED-------- 213 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC--------------------------------cCC--------
Confidence 45999999999999999999999 9999999764210 011
Q ss_pred HHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCC
Q 006387 168 TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 247 (647)
Q Consensus 168 ~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g 247 (647)
..+.+.+.+.+++ .|+++++++.++.+..++ +
T Consensus 214 ----------------------------------------------~ei~~~~~~~l~~-~gv~i~~~~~v~~~~~~~-~ 245 (454)
T COG1249 214 ----------------------------------------------PEISKELTKQLEK-GGVKILLNTKVTAVEKKD-D 245 (454)
T ss_pred ----------------------------------------------HHHHHHHHHHHHh-CCeEEEccceEEEEEecC-C
Confidence 1344556666666 589999999999988653 2
Q ss_pred CCCeEEEEEEEecCCCeEEEEEcCeEEECCCccc
Q 006387 248 PDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 248 ~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 281 (647)
. ..+... +|+...+.|+.|++|+|-.+
T Consensus 246 ---~-v~v~~~---~g~~~~~~ad~vLvAiGR~P 272 (454)
T COG1249 246 ---G-VLVTLE---DGEGGTIEADAVLVAIGRKP 272 (454)
T ss_pred ---e-EEEEEe---cCCCCEEEeeEEEEccCCcc
Confidence 2 223333 33322689999999999554
No 316
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=96.98 E-value=0.00092 Score=77.02 Aligned_cols=39 Identities=26% Similarity=0.380 Sum_probs=35.7
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCC
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESN 125 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~ 125 (647)
...+|+|||||++|++||+.|++.| +|+|+|+....||.
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr 276 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGR 276 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCc
Confidence 4579999999999999999999999 99999999877764
No 317
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=96.97 E-value=0.0082 Score=65.82 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=29.0
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
-.|+|||+|..|+-+|..+.+.| +|.++++.+
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~ 182 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED 182 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc
Confidence 46999999999999999999999 999998754
No 318
>PTZ00058 glutathione reductase; Provisional
Probab=96.95 E-value=0.0096 Score=66.81 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=29.5
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
-.|+|||+|..|+-.|..+++.| +|+|+++++
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~ 270 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGN 270 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCcEEEEEecc
Confidence 46999999999999999999999 999999865
No 319
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=96.93 E-value=0.0086 Score=65.71 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=29.6
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecCC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~ 121 (647)
-.|+|||+|..|+-.|..+++.| +|.|+++.+.
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~ 200 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGEL 200 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCC
Confidence 36999999999999999999999 9999998653
No 320
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.91 E-value=0.0091 Score=66.09 Aligned_cols=30 Identities=27% Similarity=0.292 Sum_probs=28.0
Q ss_pred CEEEECcchHHHHHHHHHHhcC-CeEEEEec
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKA 119 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~ 119 (647)
.++|||||..|+-.|..+++.| +|+|+++.
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 6999999999999999999999 99999864
No 321
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.90 E-value=0.011 Score=67.52 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=29.9
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecCC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~ 121 (647)
-.|+|||||..|+-.|..+++.| +|+|||+.+.
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ 346 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQ 346 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 37999999999999999999999 9999998653
No 322
>PLN02568 polyamine oxidase
Probab=96.89 E-value=0.0011 Score=74.08 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=33.5
Q ss_pred ccCEEEECcchHHHHHHHHHHhc-----C-CeEEEEecCCCCCC
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKH-----G-TVAVITKAEPHESN 125 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~-----G-~V~llEk~~~~~G~ 125 (647)
..||+|||+|+|||+||..|++. | +|+|+|+....||.
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr 48 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGR 48 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCe
Confidence 47999999999999999999965 4 79999999887764
No 323
>PLN02507 glutathione reductase
Probab=96.86 E-value=0.01 Score=66.02 Aligned_cols=32 Identities=25% Similarity=0.273 Sum_probs=29.3
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
-.|+|||+|..|+-.|..+++.| +|.|+++.+
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~ 236 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKE 236 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecC
Confidence 47999999999999999999999 999999865
No 324
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.86 E-value=0.011 Score=65.16 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=30.1
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecCC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~ 121 (647)
-.|+|||||..|+-.|..+++.| +|+|||+.+.
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~ 208 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ 208 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 37999999999999999999999 9999998653
No 325
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=96.84 E-value=0.0097 Score=70.05 Aligned_cols=31 Identities=32% Similarity=0.341 Sum_probs=28.9
Q ss_pred CEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
.++|||||..|+-+|..+++.| +|.|++..+
T Consensus 147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~ 178 (847)
T PRK14989 147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFAP 178 (847)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeccc
Confidence 5899999999999999999999 999999765
No 326
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.82 E-value=0.009 Score=64.46 Aligned_cols=36 Identities=36% Similarity=0.412 Sum_probs=32.8
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCC
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHE 123 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~ 123 (647)
..+|+|||+|++|+.+|..|+++| +|+++|+.+..+
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~ 172 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLG 172 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccc
Confidence 369999999999999999999999 999999987654
No 327
>PRK14727 putative mercuric reductase; Provisional
Probab=96.81 E-value=0.013 Score=65.02 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=28.3
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEec
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKA 119 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~ 119 (647)
-.|+|||+|..|+-.|..+++.| +|+|+++.
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~ 220 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARS 220 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 36999999999999999999999 99999864
No 328
>PRK14694 putative mercuric reductase; Provisional
Probab=96.80 E-value=0.015 Score=64.34 Aligned_cols=31 Identities=32% Similarity=0.445 Sum_probs=28.3
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEec
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKA 119 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~ 119 (647)
-.|+|||+|..|+-.|..+++.| +|+|+++.
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~ 210 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARS 210 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 36999999999999999999999 99999864
No 329
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=96.78 E-value=0.011 Score=64.33 Aligned_cols=33 Identities=27% Similarity=0.487 Sum_probs=29.7
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecCC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~ 121 (647)
-.|+|||+|.+|+-+|..+++.| +|+++++.+.
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 171 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSER 171 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence 47999999999999999999999 9999997653
No 330
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=96.77 E-value=0.017 Score=63.67 Aligned_cols=33 Identities=30% Similarity=0.547 Sum_probs=30.0
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecCC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~ 121 (647)
-.|+|||+|..|+-.|..+++.| +|.|+++.+.
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 203 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDR 203 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 47999999999999999999999 9999998653
No 331
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=96.76 E-value=0.013 Score=64.65 Aligned_cols=32 Identities=28% Similarity=0.506 Sum_probs=29.3
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
-.|+|||+|..|+-.|..+++.| +|+++++.+
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~ 210 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRD 210 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 36999999999999999999999 999999765
No 332
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=96.75 E-value=0.0092 Score=70.03 Aligned_cols=32 Identities=38% Similarity=0.497 Sum_probs=29.3
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
-.|+|||||..|+-+|..|++.| +|.|+++.+
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~ 173 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAP 173 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCC
Confidence 36999999999999999999999 999999754
No 333
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=96.74 E-value=0.0016 Score=75.69 Aligned_cols=37 Identities=22% Similarity=0.344 Sum_probs=33.0
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCC
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHE 123 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~ 123 (647)
....|+|||+||||++||+.|++.| +|+|+|+.+..+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~g 419 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITL 419 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccc
Confidence 4568999999999999999999999 999999876543
No 334
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=96.74 E-value=0.014 Score=64.57 Aligned_cols=45 Identities=22% Similarity=0.296 Sum_probs=33.2
Q ss_pred CceEECCCCCcccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHH
Q 006387 437 GGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSID 490 (647)
Q Consensus 437 GGi~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~ 490 (647)
|.|.||+++||++||+||+|||+ ++. .++ ..|.-.|++|+++++.
T Consensus 306 G~I~Vd~~l~Ts~~~IyA~GDv~-~~~----~l~----~~A~~qG~~aa~ni~g 350 (486)
T TIGR01423 306 GAIQVDEFSRTNVPNIYAIGDVT-DRV----MLT----PVAINEGAAFVDTVFG 350 (486)
T ss_pred CCEecCCCCcCCCCCEEEeeecC-CCc----ccH----HHHHHHHHHHHHHHhC
Confidence 56899999999999999999997 322 122 2356667888877753
No 335
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.72 E-value=0.015 Score=63.70 Aligned_cols=31 Identities=26% Similarity=0.550 Sum_probs=29.0
Q ss_pred CEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
.|+|||+|..|+-.|..+++.| +|+|+++++
T Consensus 160 ~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~ 191 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFANFGSKVTILEAAS 191 (441)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 7999999999999999999999 999999864
No 336
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.70 E-value=0.017 Score=63.67 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=28.5
Q ss_pred cCEEEECcchHHHHHHHHHHhcC--CeEEEEecC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 120 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~~ 120 (647)
-.|+|||||..|+-+|..|++.| +|+|+++..
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 47999999999999999999998 699998753
No 337
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.68 E-value=0.019 Score=63.22 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=28.6
Q ss_pred cCEEEECcchHHHHHHHHHHhcC--CeEEEEecC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 120 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~~ 120 (647)
-.|+|||+|..|+-+|..+.+.| +|+|+++..
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 47999999999999999999998 599998754
No 338
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=96.68 E-value=0.0019 Score=67.24 Aligned_cols=40 Identities=23% Similarity=0.447 Sum_probs=34.4
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC-C--eEEEEecCCCCCCc
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG-T--VAVITKAEPHESNT 126 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G-~--V~llEk~~~~~G~t 126 (647)
...+|+|||||++||+||++|++++ + |+|+|+.+..||.-
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwi 52 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWI 52 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCccccee
Confidence 3579999999999999999999998 5 56699999887744
No 339
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.011 Score=59.84 Aligned_cols=55 Identities=11% Similarity=0.122 Sum_probs=41.6
Q ss_pred HHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEEC
Q 006387 218 RALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLA 276 (647)
Q Consensus 218 ~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlA 276 (647)
..|.+++++.+|++|+.+..-+++.-+. . +|.|..+.|..+|+.+.+.-..|++-
T Consensus 393 ~VLq~kl~sl~Nv~ii~na~Ttei~Gdg-~---kV~Gl~Y~dr~sge~~~l~LeGvFVq 447 (520)
T COG3634 393 AVLQDKLRSLPNVTIITNAQTTEVKGDG-D---KVTGLEYRDRVSGEEHHLELEGVFVQ 447 (520)
T ss_pred HHHHHHHhcCCCcEEEecceeeEEecCC-c---eecceEEEeccCCceeEEEeeeeEEE
Confidence 3466777788899999999999998652 2 79999999988888766554444443
No 340
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.63 E-value=0.018 Score=67.43 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=28.9
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-C-eEEEEecC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-T-VAVITKAE 120 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~-V~llEk~~ 120 (647)
-.|+|||||..|+-+|..+.+.| + |+|+++..
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 36999999999999999999999 6 99998754
No 341
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.62 E-value=0.014 Score=64.60 Aligned_cols=54 Identities=15% Similarity=0.128 Sum_probs=39.1
Q ss_pred HHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEec---------CCCeEEEEEcCeEEECCCccc
Q 006387 223 AVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNV---------ETQEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 223 ~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~---------~~g~~~~i~Ak~VVlAtGg~~ 281 (647)
.+.+ .||+++.++.++++..+ ++ ++.+|.+... ..|+..++.++.||+|+|-..
T Consensus 338 ~~~~-~GV~i~~~~~~~~i~~~-~g---~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p 400 (471)
T PRK12810 338 NAHE-EGVEREFNVQTKEFEGE-NG---KVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTG 400 (471)
T ss_pred HHHH-cCCeEEeccCceEEEcc-CC---EEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCC
Confidence 3444 49999999999999753 45 7888765421 124556899999999999543
No 342
>PRK07846 mycothione reductase; Reviewed
Probab=96.62 E-value=0.018 Score=63.14 Aligned_cols=33 Identities=18% Similarity=0.356 Sum_probs=30.1
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecCC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~ 121 (647)
-.|+|||||..|+-.|..+++.| +|+|+++.+.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ 200 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGR 200 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence 47999999999999999999999 9999998653
No 343
>PRK13748 putative mercuric reductase; Provisional
Probab=96.61 E-value=0.018 Score=65.16 Aligned_cols=31 Identities=32% Similarity=0.491 Sum_probs=28.6
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEec
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKA 119 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~ 119 (647)
-.|+|||+|..|+-.|..+++.| +|+|+++.
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 302 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARS 302 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 36999999999999999999999 99999974
No 344
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.59 E-value=0.0044 Score=66.88 Aligned_cols=54 Identities=22% Similarity=0.149 Sum_probs=35.7
Q ss_pred cCceEECCCCCcc-cCceeecccccCCCCCCC-Cccc-hhhhHHHHHHHHHHHHHHHH
Q 006387 436 CGGVRAGLQGETN-VRGLYVAGEVACTGLHGA-NRLA-SNSLLEALVFARRAVQPSID 490 (647)
Q Consensus 436 ~GGi~vD~~~~T~-ipGLyAaGe~a~~g~~Ga-~rl~-g~sl~~a~v~G~~Ag~~a~~ 490 (647)
.|.|.||++++|+ .+++||+||++. -.+.. ...+ .-....+...+++++.....
T Consensus 253 ~g~i~v~~~~~~~~~~~v~a~GD~~~-~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~ 309 (415)
T COG0446 253 GGAVLVDERGGTSKDPDVYAAGDVAE-IPAAETGKGGRIALWAIAVAAGRIAAENIAG 309 (415)
T ss_pred CCCEEEccccccCCCCCEEeccceEe-eecccCCceeeeechhhHhhhhHHHHHHhcc
Confidence 3569999999998 999999999972 22221 1111 22234566677777777664
No 345
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.58 E-value=0.014 Score=65.90 Aligned_cols=32 Identities=31% Similarity=0.398 Sum_probs=29.3
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
-.|+|||||..|+-.|..+++.| +|+|+++.+
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 46999999999999999999999 999999864
No 346
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=96.57 E-value=0.0021 Score=65.02 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=36.7
Q ss_pred ccCEEEECcchHHHHHHHHHHhcCCeEEEEecCCCCCCccc
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNY 128 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G~V~llEk~~~~~G~t~~ 128 (647)
..+|.|||+|++||+||+.|+++-+|+|+|.+...||.+..
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~rhdVTLfEA~~rlGGha~T 48 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRRHDVTLFEADRRLGGHANT 48 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcccceEEEeccccccCccce
Confidence 46899999999999999999998899999999988886643
No 347
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=96.52 E-value=0.0028 Score=67.05 Aligned_cols=37 Identities=24% Similarity=0.466 Sum_probs=33.5
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC--CeEEEEecCCCCC
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHES 124 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~~~~~G 124 (647)
...|+|||+|+||++||.+|-+.| +|+|+|.....||
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGG 59 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGG 59 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCc
Confidence 458999999999999999999888 8999999887776
No 348
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.48 E-value=0.027 Score=59.76 Aligned_cols=32 Identities=25% Similarity=0.329 Sum_probs=28.3
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-C-eEEEEecC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-T-VAVITKAE 120 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~-V~llEk~~ 120 (647)
-.|+|||+|..|+-+|..+.+.| + |+|+++..
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 36999999999999999999889 6 99998753
No 349
>PTZ00052 thioredoxin reductase; Provisional
Probab=96.47 E-value=0.026 Score=62.84 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=28.0
Q ss_pred CEEEECcchHHHHHHHHHHhcC-CeEEEEec
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKA 119 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~ 119 (647)
.|+|||+|..|+-.|..+++.| +|+|+++.
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 6999999999999999999999 99999863
No 350
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.46 E-value=0.022 Score=62.31 Aligned_cols=32 Identities=19% Similarity=0.274 Sum_probs=29.5
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
-.|+|||||..|+-.|..+++.| +|+|+++.+
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 181 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSD 181 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 36999999999999999999999 999999865
No 351
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.46 E-value=0.028 Score=61.75 Aligned_cols=32 Identities=16% Similarity=0.368 Sum_probs=29.6
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
-.|+|||+|..|+-.|..+++.| +|+|+++.+
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~ 202 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRST 202 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 47999999999999999999999 999999864
No 352
>PLN02546 glutathione reductase
Probab=96.42 E-value=0.032 Score=62.63 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=29.1
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
-+|+|||||..|+-.|..+++.| +|.|+++.+
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~ 285 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQK 285 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEecc
Confidence 37999999999999999999999 999999765
No 353
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.40 E-value=0.023 Score=67.59 Aligned_cols=31 Identities=23% Similarity=0.347 Sum_probs=28.6
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEec
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKA 119 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~ 119 (647)
-.|+|||||..|+-+|..|.+.| +|+++.+.
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr 479 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRR 479 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEec
Confidence 46999999999999999999999 99999875
No 354
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=96.35 E-value=0.022 Score=58.60 Aligned_cols=102 Identities=21% Similarity=0.203 Sum_probs=76.9
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHHHHHH
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 167 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~ 167 (647)
-..+|||+|..||--+---.+.| +|++||-.+..++. .|.
T Consensus 212 k~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~--------------------------------mD~------- 252 (506)
T KOG1335|consen 212 KKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV--------------------------------MDG------- 252 (506)
T ss_pred ceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc--------------------------------cCH-------
Confidence 46899999999998888888899 99999976543321 111
Q ss_pred HHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCC
Q 006387 168 TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 247 (647)
Q Consensus 168 ~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g 247 (647)
++.+.+.+-+.+ .|++++.+|.|+....+.+|
T Consensus 253 -----------------------------------------------Eisk~~qr~L~k-QgikF~l~tkv~~a~~~~dg 284 (506)
T KOG1335|consen 253 -----------------------------------------------EISKAFQRVLQK-QGIKFKLGTKVTSATRNGDG 284 (506)
T ss_pred -----------------------------------------------HHHHHHHHHHHh-cCceeEeccEEEEeeccCCC
Confidence 222333334444 49999999999999988665
Q ss_pred CCCeEEEEEEEecCCCeEEEEEcCeEEECCCccc
Q 006387 248 PDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 248 ~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 281 (647)
.+-+.+.+..+++..++.||.+.+|+|-.+
T Consensus 285 ----~v~i~ve~ak~~k~~tle~DvlLVsiGRrP 314 (506)
T KOG1335|consen 285 ----PVEIEVENAKTGKKETLECDVLLVSIGRRP 314 (506)
T ss_pred ----ceEEEEEecCCCceeEEEeeEEEEEccCcc
Confidence 335777888899999999999999999554
No 355
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.34 E-value=0.0046 Score=67.08 Aligned_cols=38 Identities=18% Similarity=0.264 Sum_probs=32.4
Q ss_pred ccCEEEECcchHHHHHHHHHH-hcC-CeEEEEecCCCCCC
Q 006387 88 YFDFSVIGSGVAGLCYALEVA-KHG-TVAVITKAEPHESN 125 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa-~~G-~V~llEk~~~~~G~ 125 (647)
..-|+||||||||+.||..+. +.| +|.|+||.+.++|.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGL 78 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGL 78 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccE
Confidence 356999999999999999764 668 99999999987653
No 356
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.32 E-value=0.023 Score=60.46 Aligned_cols=49 Identities=14% Similarity=0.114 Sum_probs=34.7
Q ss_pred HHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCc
Q 006387 217 ERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGG 279 (647)
Q Consensus 217 ~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg 279 (647)
.....+.+++ .||+|+.++.|+++..+ +|.+. +|+. .|.++.||.|+|-
T Consensus 212 ~~~a~~~L~~-~GV~v~l~~~Vt~v~~~---------~v~~~---~g~~-~I~~~tvvWaaGv 260 (405)
T COG1252 212 SKYAERALEK-LGVEVLLGTPVTEVTPD---------GVTLK---DGEE-EIPADTVVWAAGV 260 (405)
T ss_pred HHHHHHHHHH-CCCEEEcCCceEEECCC---------cEEEc---cCCe-eEecCEEEEcCCC
Confidence 3444445555 59999999999999643 35443 3433 6999999999993
No 357
>PLN02976 amine oxidase
Probab=96.31 E-value=0.0048 Score=74.00 Aligned_cols=41 Identities=27% Similarity=0.392 Sum_probs=36.4
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCc
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT 126 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t 126 (647)
....||+|||+|++|+.+|+.|++.| +|+|+|+....||..
T Consensus 691 ~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri 732 (1713)
T PLN02976 691 VDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRV 732 (1713)
T ss_pred CCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCce
Confidence 34589999999999999999999999 999999988777643
No 358
>PLN03000 amine oxidase
Probab=96.28 E-value=0.0049 Score=71.26 Aligned_cols=40 Identities=20% Similarity=0.392 Sum_probs=36.1
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCc
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT 126 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t 126 (647)
...||+|||+|++|+.||..|++.| +|+|+|+....||..
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi 223 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRV 223 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCc
Confidence 3589999999999999999999999 999999998877744
No 359
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.17 E-value=0.045 Score=65.77 Aligned_cols=51 Identities=18% Similarity=0.297 Sum_probs=37.9
Q ss_pred CCcEEEcceEEEEEEecCCCCCCeEEEEEEEec--------------CCCeEEEEEcCeEEECCCccc
Q 006387 228 PNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNV--------------ETQEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 228 ~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~--------------~~g~~~~i~Ak~VVlAtGg~~ 281 (647)
.||+++..+.++++..+++| ++.++.+... .+|+..++.+|.||+|.|-.+
T Consensus 622 eGI~~~~~~~p~~i~~~~~G---~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p 686 (1006)
T PRK12775 622 EGIDFFFLHSPVEIYVDAEG---SVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKA 686 (1006)
T ss_pred CCCEEEecCCcEEEEeCCCC---eEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCC
Confidence 48999999988888765555 7888876421 134556799999999999443
No 360
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.10 E-value=0.047 Score=59.47 Aligned_cols=47 Identities=9% Similarity=0.053 Sum_probs=32.8
Q ss_pred HHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCc
Q 006387 218 RALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGG 279 (647)
Q Consensus 218 ~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg 279 (647)
..+.+.+++ .||+++.++.+.++.. + . +.. .+|+ .+.++.||+|+|-
T Consensus 232 ~~~~~~L~~-~gV~v~~~~~v~~v~~--~----~---v~~---~~g~--~i~~d~vi~~~G~ 278 (424)
T PTZ00318 232 KYGQRRLRR-LGVDIRTKTAVKEVLD--K----E---VVL---KDGE--VIPTGLVVWSTGV 278 (424)
T ss_pred HHHHHHHHH-CCCEEEeCCeEEEEeC--C----E---EEE---CCCC--EEEccEEEEccCC
Confidence 344455555 4999999999998852 2 2 333 3454 5899999999984
No 361
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=96.07 E-value=0.21 Score=52.42 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=29.0
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
...-.|||+|+|-+|.+..-.+-..- +|+||+-..
T Consensus 53 ~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRn 88 (491)
T KOG2495|consen 53 GKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRN 88 (491)
T ss_pred CCCceEEEEcCchHHHHHHHhccccccceEEecccc
Confidence 34568999999999999988887777 999998654
No 362
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=95.89 E-value=0.0094 Score=64.79 Aligned_cols=36 Identities=31% Similarity=0.472 Sum_probs=33.3
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES 124 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G 124 (647)
-.|.|||||||||.||..|++.| .|++.|+.+..+|
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GG 160 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGG 160 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCce
Confidence 68999999999999999999999 9999999887654
No 363
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=95.78 E-value=0.088 Score=54.94 Aligned_cols=35 Identities=20% Similarity=0.463 Sum_probs=29.2
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-----CeEEEEecC
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-----TVAVITKAE 120 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-----~V~llEk~~ 120 (647)
...|||||||||+.|++.|..+...- ||+|+|.+.
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~ 73 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD 73 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEeccc
Confidence 44799999999999988888887542 899999874
No 364
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.095 Score=54.07 Aligned_cols=92 Identities=24% Similarity=0.298 Sum_probs=70.6
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHHHHH
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVV 166 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~ 166 (647)
.-||+|||||-+.+-.|+.|++-+ +|.|+-+++....
T Consensus 143 ~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra------------------------------------------ 180 (305)
T COG0492 143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA------------------------------------------ 180 (305)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc------------------------------------------
Confidence 349999999999999999999999 8999988653211
Q ss_pred HHHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCC
Q 006387 167 CTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLD 246 (647)
Q Consensus 167 ~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~ 246 (647)
...+.+.+.+..+|.++.++.+.++.-+
T Consensus 181 --------------------------------------------------~~~~~~~l~~~~~i~~~~~~~i~ei~G~-- 208 (305)
T COG0492 181 --------------------------------------------------EEILVERLKKNVKIEVLTNTVVKEILGD-- 208 (305)
T ss_pred --------------------------------------------------CHHHHHHHHhcCCeEEEeCCceeEEecC--
Confidence 0234445555458999999999999744
Q ss_pred CCCCeEEEEEEEecCCCeEEEEEcCeEEECCC
Q 006387 247 GPDAVCHGVDTLNVETQEVVRFISKVTLLASG 278 (647)
Q Consensus 247 g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtG 278 (647)
.+.+|.+.+.. ++...+..+.|+++.|
T Consensus 209 ----~v~~v~l~~~~-~~~~~~~~~gvf~~iG 235 (305)
T COG0492 209 ----DVEGVVLKNVK-GEEKELPVDGVFIAIG 235 (305)
T ss_pred ----ccceEEEEecC-CceEEEEeceEEEecC
Confidence 15678887755 6667888899999888
No 365
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=95.51 E-value=0.1 Score=55.54 Aligned_cols=99 Identities=13% Similarity=0.131 Sum_probs=72.5
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHHHHHH
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 167 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~ 167 (647)
--|+|||+|..|+-+|-.+...+ +|++|++.+.+-- . .
T Consensus 214 ~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~------------------------------------~---l-- 252 (478)
T KOG1336|consen 214 GKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLP------------------------------------R---L-- 252 (478)
T ss_pred ceEEEECchHHHHHHHHHHHhcCceEEEEccCccchh------------------------------------h---h--
Confidence 45999999999999999999888 9999998653210 0 0
Q ss_pred HHhHHHHHHHHHcCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCC
Q 006387 168 TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 247 (647)
Q Consensus 168 ~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g 247 (647)
-+..+.+.+...+++ .||+++.++.+.++..+.+|
T Consensus 253 --------------------------------------------f~~~i~~~~~~y~e~-kgVk~~~~t~~s~l~~~~~G 287 (478)
T KOG1336|consen 253 --------------------------------------------FGPSIGQFYEDYYEN-KGVKFYLGTVVSSLEGNSDG 287 (478)
T ss_pred --------------------------------------------hhHHHHHHHHHHHHh-cCeEEEEecceeecccCCCC
Confidence 011222334444555 59999999999999987666
Q ss_pred CCCeEEEEEEEecCCCeEEEEEcCeEEECCCccc
Q 006387 248 PDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 248 ~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 281 (647)
+++-|.+. +|+ ++.|+.||+.+|.-+
T Consensus 288 ---ev~~V~l~---dg~--~l~adlvv~GiG~~p 313 (478)
T KOG1336|consen 288 ---EVSEVKLK---DGK--TLEADLVVVGIGIKP 313 (478)
T ss_pred ---cEEEEEec---cCC--EeccCeEEEeecccc
Confidence 67766664 354 699999999999765
No 366
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.089 Score=50.26 Aligned_cols=57 Identities=23% Similarity=0.330 Sum_probs=45.5
Q ss_pred HHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCC
Q 006387 218 RALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASG 278 (647)
Q Consensus 218 ~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtG 278 (647)
..+.+++++.++|+++.++.+++.+-+ .+ .+.|+.+.+..+|+...+..+.++.|.|
T Consensus 196 ~~Mq~ra~~npnI~v~~nt~~~ea~gd-~~---~l~~l~ikn~~tge~~dl~v~GlFf~IG 252 (322)
T KOG0404|consen 196 KIMQQRAEKNPNIEVLYNTVAVEALGD-GK---LLNGLRIKNVKTGEETDLPVSGLFFAIG 252 (322)
T ss_pred HHHHHHHhcCCCeEEEechhhhhhccC-cc---cccceEEEecccCcccccccceeEEEec
Confidence 345667777899999999998888755 22 6778889998999888888888887776
No 367
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=95.36 E-value=0.14 Score=61.91 Aligned_cols=52 Identities=13% Similarity=0.052 Sum_probs=37.0
Q ss_pred HHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccc
Q 006387 223 AVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 223 ~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 281 (647)
.+++ .||+++.++.++.+..+ + ++.+|.+... +|+..++.|+.|+++.|-.+
T Consensus 360 ~L~~-~GV~i~~~~~v~~i~g~--~---~v~~V~l~~~-~g~~~~i~~D~V~va~G~~P 411 (985)
T TIGR01372 360 EARE-LGIEVLTGHVVAATEGG--K---RVSGVAVARN-GGAGQRLEADALAVSGGWTP 411 (985)
T ss_pred HHHH-cCCEEEcCCeEEEEecC--C---cEEEEEEEec-CCceEEEECCEEEEcCCcCc
Confidence 3444 49999999999988643 3 5677766532 34445799999999999544
No 368
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.11 E-value=0.22 Score=57.33 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=28.4
Q ss_pred cCEEEECcchHHHHHHHHHHhcC--CeEEEEecC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 120 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~~ 120 (647)
-.|+|||||..|+-+|..+.+.| +|+|+.+..
T Consensus 324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 46999999999999999999998 599998754
No 369
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.79 E-value=0.31 Score=51.01 Aligned_cols=140 Identities=21% Similarity=0.186 Sum_probs=81.6
Q ss_pred EEEECcchHHHHHHHHHHhcC---C--eEEEEecCCCCCCccccCCCeeeecCCCCCHHHHHHHHHHhcccCCCHHHHHH
Q 006387 91 FSVIGSGVAGLCYALEVAKHG---T--VAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 165 (647)
Q Consensus 91 VlVIGgG~AGl~AA~~aa~~G---~--V~llEk~~~~~G~t~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~ 165 (647)
|.|||||-++.-+=+.|-..- . +--|.|+.-. ...+.++ -+.....|+.+..
T Consensus 190 V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf--------------~p~d~Sk---------f~~e~F~P~y~dy 246 (436)
T COG3486 190 VTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGF--------------LPMDYSK---------FGLEYFSPEYTDY 246 (436)
T ss_pred EEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCC--------------Cccccch---------hhhhhcCchhHHH
Confidence 999999999887777775432 2 3334443210 0111111 1122345666666
Q ss_pred HHHHhHHHHHHHHH-cCCCcccCCCCCccccccCCccccceeeccCCchHHHHHHHHHHHHc--CCCcEEEcceEEEEEE
Q 006387 166 VCTEGPDRIRELIA-IGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVS--DPNISVFEHHFAIDLL 242 (647)
Q Consensus 166 ~~~~~~~~i~~l~~-~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~--~~gv~i~~~~~v~~l~ 242 (647)
+..-.++.-+.+.. .+ ...+.-+ ..+=.++-..|+.+-.. .+++.++..+++..+.
T Consensus 247 fy~l~~~~r~~ll~~~~-~~YkgI~--------------------~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~ 305 (436)
T COG3486 247 FYGLPPEARDELLRKQR-LLYKGIS--------------------FDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVE 305 (436)
T ss_pred HhcCCHHHHHHHHhhcC-ccccccC--------------------HHHHHHHHHHHHHHHhcCCCCCeeeccccceeeee
Confidence 66666555555432 32 1111100 00122344555554221 3679999999999998
Q ss_pred ecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCC
Q 006387 243 TTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASG 278 (647)
Q Consensus 243 ~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtG 278 (647)
...+| + .-+......+|+..++..|+||+|||
T Consensus 306 ~~G~g---~-~~l~~~~~~~~~~~t~~~D~vIlATG 337 (436)
T COG3486 306 PAGDG---R-YRLTLRHHETGELETVETDAVILATG 337 (436)
T ss_pred cCCCc---e-EEEEEeeccCCCceEEEeeEEEEecc
Confidence 76555 4 34566666788889999999999999
No 370
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=94.73 E-value=0.036 Score=59.79 Aligned_cols=41 Identities=17% Similarity=0.302 Sum_probs=32.6
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCc
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT 126 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t 126 (647)
+.+|||||+|.|..-+..|..|++.| +|+.+|++...||..
T Consensus 2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~ 43 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEW 43 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG
T ss_pred CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCch
Confidence 35799999999999999999999999 999999999887643
No 371
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=94.69 E-value=0.32 Score=55.09 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=26.9
Q ss_pred cCEEEECcchHHHHHHHHHHhcC--CeEEEEecC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 120 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~~ 120 (647)
-.|+|||+|..|+-+|..+.+.| +|+|+.+..
T Consensus 268 k~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~ 301 (564)
T PRK12771 268 KRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRT 301 (564)
T ss_pred CCEEEECChHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 46999999999999999888888 588887754
No 372
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=94.51 E-value=0.042 Score=56.61 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=31.8
Q ss_pred cCEEEECcchHHHHHHHHHHhc--C-CeEEEEecCCCCC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEPHES 124 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~--G-~V~llEk~~~~~G 124 (647)
.-|.|||+||||+.+|..|-++ + +|.|+||.+.+.|
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFG 59 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFG 59 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccc
Confidence 3799999999999999999885 4 8999999998765
No 373
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=94.45 E-value=0.095 Score=61.44 Aligned_cols=51 Identities=14% Similarity=0.100 Sum_probs=40.1
Q ss_pred CCcEEEcceEEEEEEecCCCCCCeEEEEEEEecC------------CC-------------eEEEEEcCeEEECCCccc
Q 006387 228 PNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVE------------TQ-------------EVVRFISKVTLLASGGAG 281 (647)
Q Consensus 228 ~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~------------~g-------------~~~~i~Ak~VVlAtGg~~ 281 (647)
.||.+.+.+..++++.+++| ++.|+.+.... ++ ...+|.|+.||+|.|--.
T Consensus 653 EGV~f~~~~~P~~i~~d~~g---~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~ 728 (1028)
T PRK06567 653 LGVDFKENMQPLRINVDKYG---HVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIEN 728 (1028)
T ss_pred cCcEEEecCCcEEEEecCCC---eEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCC
Confidence 49999999999999987666 89998876432 12 447899999999999543
No 374
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=94.39 E-value=0.34 Score=51.46 Aligned_cols=48 Identities=19% Similarity=0.176 Sum_probs=32.4
Q ss_pred HHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccc
Q 006387 219 ALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 219 ~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 281 (647)
.+.+.+++ .||+++.++.+.++. ++ ++.+ .+|+ .+.++.||+|+|..+
T Consensus 196 ~~~~~l~~-~gV~v~~~~~v~~i~---~~------~v~~---~~g~--~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 196 LVLRLLAR-RGIEVHEGAPVTRGP---DG------ALIL---ADGR--TLPADAILWATGARA 243 (364)
T ss_pred HHHHHHHH-CCCEEEeCCeeEEEc---CC------eEEe---CCCC--EEecCEEEEccCCCh
Confidence 34445555 499999999988773 22 2333 2354 589999999999544
No 375
>PRK13984 putative oxidoreductase; Provisional
Probab=94.30 E-value=0.39 Score=54.91 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.5
Q ss_pred cCEEEECcchHHHHHHHHHHhcC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG 111 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G 111 (647)
-.|+|||||..|+-+|..+++.+
T Consensus 419 k~VvVIGGG~~g~e~A~~l~r~~ 441 (604)
T PRK13984 419 RSLVVIGGGNVAMDIARSMARLQ 441 (604)
T ss_pred CcEEEECCchHHHHHHHHHHhcc
Confidence 47999999999999999998763
No 376
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=94.06 E-value=0.056 Score=62.51 Aligned_cols=39 Identities=33% Similarity=0.400 Sum_probs=35.0
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCC
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES 124 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G 124 (647)
..-..|.|||+|||||+||-.|.+.| .|+|.||....||
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~gg 1822 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGG 1822 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCc
Confidence 34568999999999999999999999 9999999987765
No 377
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=93.92 E-value=0.52 Score=52.26 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=27.8
Q ss_pred cCEEEECcchHHHHHHHHHHhcC--CeEEEEecC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 120 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~~ 120 (647)
-.|+|||||..|+-+|..+.+.| +|.++|..+
T Consensus 284 k~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~ 317 (485)
T TIGR01317 284 KKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMP 317 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 46999999999999998888887 699998765
No 378
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.64 E-value=1.7 Score=45.77 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=32.3
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC--CeEEEEecCCC
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPH 122 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~~~~ 122 (647)
+..+|++.||-||+-|+.|+.+.+.+ +++.+||.+..
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F 41 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF 41 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence 34689999999999999999999876 79999998743
No 379
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=93.52 E-value=0.76 Score=54.88 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=28.2
Q ss_pred ccCEEEECcchHHHHHHHHHHhc-C--CeEEEEecC
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKH-G--TVAVITKAE 120 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~-G--~V~llEk~~ 120 (647)
.-.|+|||||..|+-+|..+.+. | +|.||.+..
T Consensus 666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 34799999999999999998876 7 699998764
No 380
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=93.47 E-value=0.069 Score=53.98 Aligned_cols=34 Identities=32% Similarity=0.424 Sum_probs=30.8
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH 122 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~ 122 (647)
.-|.|||+|.||.-||+.++++| .|.|.|-++..
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k 38 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK 38 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence 45899999999999999999999 99999987653
No 381
>PLN02852 ferredoxin-NADP+ reductase
Probab=93.46 E-value=0.067 Score=58.88 Aligned_cols=50 Identities=24% Similarity=0.343 Sum_probs=36.5
Q ss_pred CceEECCCCCcccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhc
Q 006387 437 GGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKS 494 (647)
Q Consensus 437 GGi~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~ 494 (647)
|-|.+|.+++|++|||||+|||. .|-. .+ ++.++..++.+++++.+++..
T Consensus 374 G~V~~d~~~~T~ipGvyAaGDi~-~Gp~---gv----I~t~~~dA~~ta~~i~~d~~~ 423 (491)
T PLN02852 374 GRVLSSASGADTEPGLYVVGWLK-RGPT---GI----IGTNLTCAEETVASIAEDLEQ 423 (491)
T ss_pred ceEEeCCCCccCCCCEEEeeeEe-cCCC---Ce----eeecHhhHHHHHHHHHHHHHc
Confidence 66888888899999999999998 3332 23 333445567788888887643
No 382
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=92.52 E-value=1.3 Score=52.87 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=27.8
Q ss_pred cCEEEECcchHHHHHHHHHHhc-C--CeEEEEecC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKH-G--TVAVITKAE 120 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~-G--~V~llEk~~ 120 (647)
-.|+|||||..|+-+|..+.+. | +|.|+.++.
T Consensus 669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~ 703 (1019)
T PRK09853 669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 703 (1019)
T ss_pred CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence 4799999999999999998877 5 799998764
No 383
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=92.38 E-value=0.11 Score=52.47 Aligned_cols=35 Identities=31% Similarity=0.557 Sum_probs=30.0
Q ss_pred ccccCEEEECcchHHHHHHHHHHhc-C--CeEEEEecC
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKH-G--TVAVITKAE 120 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~-G--~V~llEk~~ 120 (647)
..++.|||||||.+|+..|....++ | +|.|||-..
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 4679999999999999999988775 4 899999654
No 384
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=91.87 E-value=0.11 Score=50.83 Aligned_cols=50 Identities=20% Similarity=0.161 Sum_probs=35.2
Q ss_pred HcCCCCCCCCeeeeeeeceecCceEECCCCCcccCceeecccccCCCCCC
Q 006387 416 KYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHG 465 (647)
Q Consensus 416 ~~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~a~~g~~G 465 (647)
+.|+.|+.+-.-..+-.....||+.||+.++|+.|.+|||||+..+..|+
T Consensus 277 atgvtpn~e~~~~~~lq~~edggikvdd~m~tslpdvFa~gDvctt~~~~ 326 (334)
T KOG2755|consen 277 ATGVTPNSEWAMNKMLQITEDGGIKVDDAMETSLPDVFAAGDVCTTTWEP 326 (334)
T ss_pred ccccCcCceEEecChhhhccccCeeehhhccccccceeeecceeccCCCC
Confidence 34566665522333445556799999999999999999999986334443
No 385
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.46 E-value=0.25 Score=51.40 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=35.5
Q ss_pred ccccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCC
Q 006387 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES 124 (647)
Q Consensus 86 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G 124 (647)
..+|||||||.|.-=...|..+++.| +|+=+|.+...||
T Consensus 6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg 45 (547)
T KOG4405|consen 6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGG 45 (547)
T ss_pred chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCC
Confidence 45799999999999999999999999 9999999988765
No 386
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.31 E-value=0.34 Score=53.34 Aligned_cols=32 Identities=28% Similarity=0.373 Sum_probs=29.4
Q ss_pred CEEEECcchHHHHHHHHHHhcC-CeEEEEecCC
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~ 121 (647)
.|+|||.|++|+++|..|+++| +|++.|+...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 3899999999999999999999 9999998754
No 387
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=89.30 E-value=0.25 Score=48.53 Aligned_cols=31 Identities=32% Similarity=0.542 Sum_probs=26.6
Q ss_pred EEEECcchHHHHHHHHHHhcC---CeEEEEecCC
Q 006387 91 FSVIGSGVAGLCYALEVAKHG---TVAVITKAEP 121 (647)
Q Consensus 91 VlVIGgG~AGl~AA~~aa~~G---~V~llEk~~~ 121 (647)
.+|||||+||.+||-.++..- +|+|+...++
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~ 35 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF 35 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence 589999999999999999864 7999987554
No 388
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.13 E-value=0.41 Score=53.02 Aligned_cols=32 Identities=28% Similarity=0.468 Sum_probs=29.0
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
-.|+|||+|.+|+.+|..|+++| +|+++|+.+
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 36999999999999999999999 999999754
No 389
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=88.81 E-value=0.44 Score=44.02 Aligned_cols=30 Identities=33% Similarity=0.484 Sum_probs=27.7
Q ss_pred EEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 91 FSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 91 VlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
|.|||+|..|.+.|..++++| +|.|..+..
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 789999999999999999999 999998753
No 390
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=88.62 E-value=0.47 Score=45.55 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=27.8
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCC
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~ 121 (647)
.-.|+|||+|.++.-+|..|++.| +|.++-|.+.
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred CCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 457999999999999999999999 9999988753
No 391
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=88.47 E-value=0.37 Score=51.93 Aligned_cols=29 Identities=31% Similarity=0.429 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHhcC-CeEEEEecCCCCCCc
Q 006387 98 VAGLCYALEVAKHG-TVAVITKAEPHESNT 126 (647)
Q Consensus 98 ~AGl~AA~~aa~~G-~V~llEk~~~~~G~t 126 (647)
+|||+||+.|+++| +|+|+|+....||..
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~ 30 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRI 30 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcce
Confidence 59999999999999 999999999888744
No 392
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=88.22 E-value=1.6 Score=49.24 Aligned_cols=52 Identities=13% Similarity=0.158 Sum_probs=36.9
Q ss_pred HHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006387 220 LLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 220 L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 282 (647)
|...+.+ .|++++.+.....+..+ + ++.++...| |. .+.|+-||+|+|-..+
T Consensus 193 L~~~le~-~Gi~~~l~~~t~ei~g~--~---~~~~vr~~D---G~--~i~ad~VV~a~GIrPn 244 (793)
T COG1251 193 LRRKLED-LGIKVLLEKNTEEIVGE--D---KVEGVRFAD---GT--EIPADLVVMAVGIRPN 244 (793)
T ss_pred HHHHHHh-hcceeecccchhhhhcC--c---ceeeEeecC---CC--cccceeEEEecccccc
Confidence 4444555 59999998877777653 3 677887653 44 4899999999996554
No 393
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=88.04 E-value=0.44 Score=40.53 Aligned_cols=32 Identities=25% Similarity=0.223 Sum_probs=28.8
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC-CeEEEEec
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKA 119 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~ 119 (647)
.-.|||||||..|..-+..|.+.| +|+|+.+.
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 356999999999999999999999 99999876
No 394
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=87.81 E-value=2.2 Score=45.14 Aligned_cols=45 Identities=9% Similarity=0.111 Sum_probs=32.4
Q ss_pred CCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCccc
Q 006387 227 DPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 227 ~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 281 (647)
+.+|++..++.|.++..+ . +.+.. .+|+...|....+|.|||-..
T Consensus 285 ~~~I~~~~~t~Vk~V~~~------~---I~~~~-~~g~~~~iPYG~lVWatG~~~ 329 (491)
T KOG2495|consen 285 RDGIDLDTGTMVKKVTEK------T---IHAKT-KDGEIEEIPYGLLVWATGNGP 329 (491)
T ss_pred hccceeecccEEEeecCc------E---EEEEc-CCCceeeecceEEEecCCCCC
Confidence 369999999999887532 1 33333 478888888899999998433
No 395
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=87.78 E-value=0.62 Score=42.50 Aligned_cols=30 Identities=30% Similarity=0.636 Sum_probs=28.1
Q ss_pred EEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 91 FSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 91 VlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
|+|||+|..|+..|..|++.| +|.++.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 689999999999999999999 999999876
No 396
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=87.72 E-value=0.74 Score=41.33 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=28.7
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC-C-eEEEEec
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG-T-VAVITKA 119 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G-~-V~llEk~ 119 (647)
...|+|||+|.+|-.++..|++.| + |.|+.|.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 457999999999999999999999 5 9999874
No 397
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=87.47 E-value=0.76 Score=46.33 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=33.4
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC--CeEEEEecCCCCCC
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESN 125 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~~~~~G~ 125 (647)
...|+|||.|..|..+|..|++.| +++|+|.......+
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sN 69 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTN 69 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccc
Confidence 568999999999999999999999 89999988765443
No 398
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=87.46 E-value=0.86 Score=47.12 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=34.4
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCC
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES 124 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G 124 (647)
..|||+|+|.|+-=+..+..|+..| +|+.||+++..|+
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~ 43 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGS 43 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCc
Confidence 3799999999999999999999999 9999999998654
No 399
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=87.03 E-value=0.71 Score=45.48 Aligned_cols=31 Identities=32% Similarity=0.574 Sum_probs=29.3
Q ss_pred CEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
.++|||+|..|...|..|.+.| .|+++|+.+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 5899999999999999999999 999999875
No 400
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=86.77 E-value=0.64 Score=44.03 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=25.9
Q ss_pred EEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 91 FSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 91 VlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
|.|||+|.-|...|..++..| +|+++|..+
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 789999999999999999999 999999743
No 401
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=86.76 E-value=0.8 Score=44.38 Aligned_cols=31 Identities=29% Similarity=0.318 Sum_probs=28.4
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEec
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKA 119 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~ 119 (647)
-.|||||||..|...+..|.+.| +|+|++..
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 36999999999999999999999 99999864
No 402
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=86.73 E-value=0.71 Score=46.38 Aligned_cols=47 Identities=21% Similarity=0.355 Sum_probs=38.5
Q ss_pred CCCcccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhh
Q 006387 444 QGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHK 492 (647)
Q Consensus 444 ~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~ 492 (647)
+.+--.||||++|=.+ ..++|.+|+|- -+...+.+|++||+.+.+.+
T Consensus 207 ~t~~~~~g~~~~gm~~-~~~~~~~rmgp-~fg~m~~sg~~~a~~~~~~~ 253 (254)
T TIGR00292 207 NTREVVPNLYVAGMAV-AAVHGLPRMGP-IFGGMLLSGKHVAEQILEKL 253 (254)
T ss_pred ccCcccCCEEEechhh-hhhcCCCCcCc-hHHHHHHhhHHHHHHHHHHh
Confidence 3344699999999998 69999999875 46678889999999887754
No 403
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=86.35 E-value=1 Score=47.88 Aligned_cols=44 Identities=23% Similarity=0.181 Sum_probs=34.4
Q ss_pred ECCCCCcc-cCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhc
Q 006387 441 AGLQGETN-VRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKS 494 (647)
Q Consensus 441 vD~~~~T~-ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~ 494 (647)
++...+|. +||||+||+.+ |.. +..||...|.+||.+|+.++++
T Consensus 346 l~~~l~~k~~~~lf~AGqi~--G~~--------Gy~eaaa~G~~ag~na~~~~~g 390 (392)
T PF01134_consen 346 LLNTLETKKIPGLFFAGQIN--GTE--------GYEEAAAQGLIAGINAARRLQG 390 (392)
T ss_dssp BBTTSBBSSSBTEEE-GGGG--TB---------SHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccceEECCCCCceECCCCc--chh--------HHHHHHHHHHHHHHHHHHHHcC
Confidence 34467775 99999999997 554 3789999999999999988754
No 404
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=85.68 E-value=1 Score=42.06 Aligned_cols=33 Identities=24% Similarity=0.151 Sum_probs=29.4
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
...|+|+|+|.+|..||..|...| +|+++|...
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 467999999999999999999999 999999754
No 405
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=85.51 E-value=0.71 Score=44.42 Aligned_cols=48 Identities=25% Similarity=0.401 Sum_probs=38.9
Q ss_pred CCCcccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhh
Q 006387 444 QGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 493 (647)
Q Consensus 444 ~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~ 493 (647)
+.+-..||||.+|-.+ .-+||++|+|- -++..+.+|+.||+.+.+.++
T Consensus 213 ~T~eV~pgL~vaGMa~-~av~G~pRMGP-iFGgMllSGkkaAe~i~e~L~ 260 (262)
T COG1635 213 NTGEVYPGLYVAGMAV-NAVHGLPRMGP-IFGGMLLSGKKAAEEILEKLK 260 (262)
T ss_pred ccccccCCeEeehhhH-HhhcCCcccCc-hhhhhhhchHHHHHHHHHHhh
Confidence 4456899999999998 58999999874 356678889999998887654
No 406
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=85.42 E-value=1.2 Score=44.23 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=34.0
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC--CeEEEEecCCCCCCc
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESNT 126 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~~~~~G~t 126 (647)
...|+|||.|..|..+|..|++.| +++|+|.+...-++.
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL 64 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNL 64 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCc
Confidence 468999999999999999999999 899999887655443
No 407
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=85.26 E-value=1.6 Score=44.57 Aligned_cols=34 Identities=24% Similarity=0.193 Sum_probs=29.2
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH 122 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~ 122 (647)
=.-||||+|..+|-||-.|+--| .|+|+=|.-..
T Consensus 199 GkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~L 233 (503)
T KOG4716|consen 199 GKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILL 233 (503)
T ss_pred CceEEEccceeeeehhhhHhhcCCCcEEEEEEeec
Confidence 35899999999999999999999 99888776544
No 408
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=84.94 E-value=0.99 Score=45.44 Aligned_cols=48 Identities=25% Similarity=0.388 Sum_probs=39.3
Q ss_pred CCCcccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhh
Q 006387 444 QGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 493 (647)
Q Consensus 444 ~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~ 493 (647)
+.+--.||||++|=.+ .-+||.+|+|- -+...+.+|++||+.+.+.++
T Consensus 208 ~t~~~~~g~~~~gm~~-~~~~~~~rmg~-~fg~m~~sg~~~a~~~~~~~~ 255 (257)
T PRK04176 208 NTGEVYPGLYVAGMAA-NAVHGLPRMGP-IFGGMLLSGKKVAELILEKLK 255 (257)
T ss_pred cCCeEcCCEEEeehhh-hhhcCCCccCc-hhHhHHHhHHHHHHHHHHHhh
Confidence 3344699999999998 68999999875 366788899999999988764
No 409
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=84.94 E-value=2.1 Score=43.05 Aligned_cols=36 Identities=33% Similarity=0.386 Sum_probs=28.0
Q ss_pred ccCEEEECcchHHHHHHHHHHhc----C----CeEEEEecCCCC
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKH----G----TVAVITKAEPHE 123 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~----G----~V~llEk~~~~~ 123 (647)
..+|+|||+|..||+.|+.+.+. . +|.|++......
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~ 46 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTED 46 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccc
Confidence 36899999999999999877762 2 678887666543
No 410
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=84.89 E-value=0.46 Score=49.61 Aligned_cols=40 Identities=18% Similarity=0.314 Sum_probs=35.5
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCCCCCCc
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT 126 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~~~G~t 126 (647)
.+|||+|+|.|.-=+..+..|+..| +|+.+||++..||.+
T Consensus 3 eeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~s 43 (440)
T KOG1439|consen 3 EEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGES 43 (440)
T ss_pred CceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccc
Confidence 3599999999999999999999999 999999999876644
No 411
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=84.80 E-value=1.1 Score=43.16 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=31.3
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC--CeEEEEecCCC
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPH 122 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~~~~ 122 (647)
...|+|||+|.-|...|..|++.| +++|+|.....
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve 57 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVE 57 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEc
Confidence 467999999999999999999999 69999987554
No 412
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=84.69 E-value=1.1 Score=47.83 Aligned_cols=33 Identities=30% Similarity=0.330 Sum_probs=29.9
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
..+|+|||+|.+|+.+|..|...| +|+++++..
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 467999999999999999999999 999999753
No 413
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=84.50 E-value=0.95 Score=49.99 Aligned_cols=33 Identities=30% Similarity=0.325 Sum_probs=30.0
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
...|+|+|+|++|+.|+..|...| +|+++|..+
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 467999999999999999999999 999999764
No 414
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.21 E-value=1.1 Score=49.24 Aligned_cols=32 Identities=34% Similarity=0.476 Sum_probs=29.3
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
-.|+|||+|..|+.+|..|++.| +|+++|+..
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 46999999999999999999999 999998754
No 415
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=84.03 E-value=0.86 Score=46.04 Aligned_cols=34 Identities=24% Similarity=0.218 Sum_probs=31.0
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
...+|+|||||.+|.-||.-|.-.| +|+++|.+.
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~ 201 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI 201 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence 4578999999999999999999999 999999864
No 416
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=83.93 E-value=1.3 Score=39.69 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=29.8
Q ss_pred cCEEEECcchHHHHHHHHHHhcC--CeEEEEecCCC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPH 122 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~~~~ 122 (647)
.-|+|||+|.-|...|..|++.| +++|+|.....
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~ 38 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVE 38 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCccee
Confidence 46999999999999999999999 79999987654
No 417
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=83.92 E-value=0.45 Score=48.41 Aligned_cols=33 Identities=33% Similarity=0.739 Sum_probs=31.2
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
+|||+|||||.||++||+.|+++| +++||.++.
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ 35 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ 35 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 689999999999999999999999 999999875
No 418
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=83.91 E-value=1.4 Score=46.15 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=33.6
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC--CeEEEEecCCCCCCc
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESNT 126 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~~~~~G~t 126 (647)
...|+|||+|..|..+|..|++.| +++|+|.+...-++.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL 64 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNL 64 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccccccc
Confidence 467999999999999999999999 899999987654443
No 419
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=83.50 E-value=1.4 Score=42.61 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=28.2
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEec
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKA 119 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~ 119 (647)
-.|||||||-.|...|..|.+.| +|+|+++.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 47999999999999999999999 99999753
No 420
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=83.32 E-value=1.5 Score=41.17 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=29.3
Q ss_pred EEEECcchHHHHHHHHHHhcC--CeEEEEecCCC
Q 006387 91 FSVIGSGVAGLCYALEVAKHG--TVAVITKAEPH 122 (647)
Q Consensus 91 VlVIGgG~AGl~AA~~aa~~G--~V~llEk~~~~ 122 (647)
|+|||+|..|...|..|++.| +++|+|.+...
T Consensus 2 VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~ 35 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVE 35 (174)
T ss_pred EEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEc
Confidence 899999999999999999999 79999987653
No 421
>PRK08328 hypothetical protein; Provisional
Probab=82.89 E-value=1.6 Score=43.18 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=31.4
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC--CeEEEEecCCC
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPH 122 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~~~~ 122 (647)
...|+|||.|..|..+|..|++.| ++.|+|.+...
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve 63 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPE 63 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccC
Confidence 467999999999999999999999 89999887654
No 422
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=82.79 E-value=1.5 Score=40.41 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=26.8
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEE
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVIT 117 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llE 117 (647)
-.|||||||..|..-|..|.+.| +|+||+
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 46999999999999999999999 999995
No 423
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=82.27 E-value=1.6 Score=45.76 Aligned_cols=37 Identities=22% Similarity=0.286 Sum_probs=32.7
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC--CeEEEEecCCCCC
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHES 124 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~~~~~G 124 (647)
...|+|||+|.-|..+|..|++.| +++|+|.+.....
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~s 62 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWS 62 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHH
Confidence 568999999999999999999999 8999999765433
No 424
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=82.13 E-value=1.5 Score=44.94 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=28.2
Q ss_pred cCEEEECcchHHHHHHHHHHhcC--CeEEEEec
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG--TVAVITKA 119 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~ 119 (647)
..|+|||+|.+|.++|..|++.| +|.|+++.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 46999999999999999999999 68899875
No 425
>PRK08223 hypothetical protein; Validated
Probab=82.06 E-value=2 Score=43.73 Aligned_cols=38 Identities=18% Similarity=0.135 Sum_probs=33.5
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC--CeEEEEecCCCCCC
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESN 125 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~~~~~G~ 125 (647)
...|+|||.|.-|..+|..|++.| ++.|+|.+...-++
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SN 66 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRN 66 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhc
Confidence 578999999999999999999999 89999988765443
No 426
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=81.92 E-value=1.9 Score=41.99 Aligned_cols=36 Identities=17% Similarity=0.257 Sum_probs=32.0
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC--CeEEEEecCCCC
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHE 123 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~~~~~ 123 (647)
...|+|||+|..|...|..|++.| +++|+|.+...-
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~ 65 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEP 65 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEecc
Confidence 568999999999999999999999 799999876543
No 427
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=81.82 E-value=1.9 Score=41.74 Aligned_cols=36 Identities=25% Similarity=0.297 Sum_probs=32.0
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC--CeEEEEecCCC
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPH 122 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~~~~ 122 (647)
.+..|+|||.|..|..+|..|++.| +++|+|.+...
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve 57 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVD 57 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEc
Confidence 3578999999999999999999999 89999987654
No 428
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=81.65 E-value=1.7 Score=37.49 Aligned_cols=30 Identities=30% Similarity=0.416 Sum_probs=27.0
Q ss_pred EEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 91 FSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 91 VlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
|+|||.|..|...+..|.+.+ +|+++|+.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 799999999999999999988 899999875
No 429
>PLN02661 Putative thiazole synthesis
Probab=81.59 E-value=1.6 Score=45.81 Aligned_cols=49 Identities=14% Similarity=0.257 Sum_probs=40.7
Q ss_pred CCCcccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhc
Q 006387 444 QGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKS 494 (647)
Q Consensus 444 ~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~ 494 (647)
+.+--+||||++|-.+ .-++|.+|+|- -++..+.+|++||+.+.+.++.
T Consensus 281 ~t~ev~pgl~~~gm~~-~~~~g~~rmgp-~fg~m~~sg~k~a~~~~~~l~~ 329 (357)
T PLN02661 281 LTREVVPGMIVTGMEV-AEIDGSPRMGP-TFGAMMISGQKAAHLALKALGL 329 (357)
T ss_pred ccCcccCCEEEeccch-hhhcCCCccCc-hhHhHHhhhHHHHHHHHHHHcc
Confidence 3345799999999988 68999999875 4677888999999999998753
No 430
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=81.13 E-value=2.1 Score=44.31 Aligned_cols=32 Identities=25% Similarity=0.566 Sum_probs=29.2
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
..|+|||+|.-|...|..|++.| +|+++.+..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 46999999999999999999999 999999853
No 431
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=81.11 E-value=0.94 Score=46.84 Aligned_cols=39 Identities=15% Similarity=0.279 Sum_probs=32.6
Q ss_pred ccCEEEECcchHHHHHHHHHHhc----C-CeEEEEecCCCCCCc
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKH----G-TVAVITKAEPHESNT 126 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~----G-~V~llEk~~~~~G~t 126 (647)
+-.+-|||+|.|||++|..|-+. | ++-|+|.-+..||+.
T Consensus 22 qKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSl 65 (587)
T COG4716 22 QKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSL 65 (587)
T ss_pred cceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCC
Confidence 34578999999999999999775 4 799999998877654
No 432
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=81.06 E-value=2.2 Score=38.53 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=30.4
Q ss_pred EEEECcchHHHHHHHHHHhcC--CeEEEEecCCCCC
Q 006387 91 FSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHES 124 (647)
Q Consensus 91 VlVIGgG~AGl~AA~~aa~~G--~V~llEk~~~~~G 124 (647)
|+|||.|.-|...|..|++.| +++|+|.......
T Consensus 2 VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~ 37 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELS 37 (143)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcc
Confidence 899999999999999999999 7999998776443
No 433
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=81.04 E-value=1.4 Score=41.97 Aligned_cols=30 Identities=33% Similarity=0.461 Sum_probs=24.4
Q ss_pred CEEEECcchHHHHHHHHHHhcC-CeEEEEec
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKA 119 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~ 119 (647)
.|.|||.|..|+..|..+|+.| +|+.+|..
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~ 32 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDID 32 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCC
Confidence 4789999999999999999999 99999964
No 434
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=80.95 E-value=1.6 Score=45.17 Aligned_cols=31 Identities=26% Similarity=0.527 Sum_probs=28.7
Q ss_pred CEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
+|.|||+|.-|...|..++++| +|+++++.+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 5999999999999999999999 999999754
No 435
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=80.75 E-value=2.2 Score=41.75 Aligned_cols=39 Identities=23% Similarity=0.312 Sum_probs=34.1
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC--CeEEEEecCCCCCCc
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESNT 126 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~~~~~G~t 126 (647)
+.-|+|||-|..|..++-.|++.| +++|||.....-.++
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~ 70 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNT 70 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcCCCeEEEEeccccccccc
Confidence 467999999999999999999999 999999998754433
No 436
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=80.63 E-value=1.9 Score=43.07 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=32.5
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC--CeEEEEecCCCCC
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHES 124 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~~~~~G 124 (647)
...|+|||.|.-|..+|..|++.| +++|+|.+...-+
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~s 70 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLS 70 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcc
Confidence 578999999999999999999999 8999998765433
No 437
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=80.23 E-value=1.7 Score=45.93 Aligned_cols=31 Identities=26% Similarity=0.368 Sum_probs=26.1
Q ss_pred CEEEECcchHHHHHHHHHHhcC--CeEEEEecC
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 120 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~~ 120 (647)
.|+|+|+|+-||.++..+...| +|+++|..+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~ 203 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP 203 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH
Confidence 5999999999999988888888 677777643
No 438
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=79.68 E-value=2.1 Score=46.08 Aligned_cols=33 Identities=24% Similarity=0.114 Sum_probs=29.5
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
.-.|+|+|.|+.|+.+|..|...| +|+++|..+
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 346999999999999999999999 999998764
No 439
>PRK04148 hypothetical protein; Provisional
Probab=79.55 E-value=1.5 Score=39.13 Aligned_cols=31 Identities=26% Similarity=0.249 Sum_probs=27.7
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
..+++||.| .|...|..|++.| +|+.+|..+
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~ 49 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINE 49 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCH
Confidence 459999999 9998899999999 999999765
No 440
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=79.26 E-value=2.6 Score=41.55 Aligned_cols=32 Identities=22% Similarity=0.407 Sum_probs=28.7
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-C---eEEEEecC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-T---VAVITKAE 120 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~---V~llEk~~ 120 (647)
..|+|+|+|.+|..+|..+.+.| + +.|+++..
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 46999999999999999999998 7 88899864
No 441
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=79.25 E-value=2.2 Score=43.61 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=27.6
Q ss_pred cCEEEECcchHHHHHHHHHHhcC--CeEEEEec
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG--TVAVITKA 119 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~ 119 (647)
..|+|+|+|.|+-++++.|++.| ++.|+.|.
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~ 160 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD 160 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 46999999999999999999999 68888764
No 442
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=79.24 E-value=2.3 Score=43.14 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=28.0
Q ss_pred CEEEECcchHHHHHHHHHHhcC--CeEEEEecC
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 120 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~~ 120 (647)
.|+|+|+|.|+.++++.|++.| +|.|+.|..
T Consensus 124 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 156 (272)
T PRK12550 124 VVALRGSGGMAKAVAAALRDAGFTDGTIVARNE 156 (272)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 6999999999999999999999 599998753
No 443
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=79.22 E-value=1.6 Score=46.88 Aligned_cols=32 Identities=44% Similarity=0.782 Sum_probs=30.5
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
|||+|||+|++|+++|+.+++.| +|+|+|++.
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 69999999999999999999999 999999875
No 444
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=79.08 E-value=2.6 Score=43.20 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=27.6
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-C-eEEEEec
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-T-VAVITKA 119 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~-V~llEk~ 119 (647)
.-++|+|+|.+|.++|..+++.| + |.|+.+.
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~ 159 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIK 159 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 35899999999999999999999 6 9999874
No 445
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=78.82 E-value=2.9 Score=43.40 Aligned_cols=32 Identities=25% Similarity=0.504 Sum_probs=29.3
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
..|+|||+|.-|..-|..|++.| +|+++.++.
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 46999999999999999999999 999998864
No 446
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=78.63 E-value=2.4 Score=41.76 Aligned_cols=38 Identities=24% Similarity=0.207 Sum_probs=32.9
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC--CeEEEEecCCCCCC
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESN 125 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~~~~~G~ 125 (647)
...|+|||.|..|...|..|++.| +++|+|.......+
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sN 60 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSN 60 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcc
Confidence 568999999999999999999999 89999987654433
No 447
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.57 E-value=2.3 Score=43.50 Aligned_cols=30 Identities=33% Similarity=0.528 Sum_probs=27.9
Q ss_pred CEEEECcchHHHHHHHHHHhcC-CeEEEEec
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKA 119 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~ 119 (647)
.|.|||+|.-|...|..+++.| +|+++|..
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~ 35 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDIS 35 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCC
Confidence 5999999999999999999999 99999964
No 448
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=78.44 E-value=2.4 Score=41.85 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=32.5
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC--CeEEEEecCCCCC
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHES 124 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~~~~~G 124 (647)
...|+|||.|..|..+|..|++.| +++|+|.....-.
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~s 49 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVS 49 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECch
Confidence 467999999999999999999999 8999998776433
No 449
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=78.39 E-value=3.3 Score=39.90 Aligned_cols=37 Identities=16% Similarity=0.270 Sum_probs=32.6
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC--CeEEEEecCCCCC
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHES 124 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~~~~~G 124 (647)
+..|+|||.|.-|...|..|++.| +++|+|.......
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~s 57 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTE 57 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChh
Confidence 578999999999999999999999 7999998765433
No 450
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=78.17 E-value=2.6 Score=43.09 Aligned_cols=32 Identities=28% Similarity=0.355 Sum_probs=28.3
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC--CeEEEEec
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKA 119 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~ 119 (647)
...|+|||+|.++-++++.|++.| +|.|+.|.
T Consensus 125 ~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt 158 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALASLGVTDITVINRN 158 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 346999999999999999999999 68898874
No 451
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=77.85 E-value=2.6 Score=43.24 Aligned_cols=31 Identities=26% Similarity=0.422 Sum_probs=28.3
Q ss_pred CEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
.|.|||+|.-|...|..++++| +|+++|+.+
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 3899999999999999999999 999998754
No 452
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=77.82 E-value=2.7 Score=44.65 Aligned_cols=31 Identities=29% Similarity=0.514 Sum_probs=29.1
Q ss_pred CEEEECcchHHHHHHHHHHhcC--CeEEEEecC
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 120 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~~ 120 (647)
+|||||+|--|..+|..|+++| +|++.+|..
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence 6999999999999999999998 899999874
No 453
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=77.67 E-value=2.9 Score=41.38 Aligned_cols=35 Identities=26% Similarity=0.287 Sum_probs=31.1
Q ss_pred EEEECcchHHHHHHHHHHhcC--CeEEEEecCCCCCC
Q 006387 91 FSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESN 125 (647)
Q Consensus 91 VlVIGgG~AGl~AA~~aa~~G--~V~llEk~~~~~G~ 125 (647)
|+|||+|.-|+..+..|+..| +++|+|.+....++
T Consensus 2 VlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sN 38 (234)
T cd01484 2 VLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSN 38 (234)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchh
Confidence 899999999999999999999 89999988765443
No 454
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=77.09 E-value=2.9 Score=43.04 Aligned_cols=29 Identities=21% Similarity=0.499 Sum_probs=27.4
Q ss_pred CEEEECcchHHHHHHHHHHhcC-CeEEEEe
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITK 118 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G-~V~llEk 118 (647)
.|+|||+|.-|...|..|++.| +|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 4899999999999999999999 9999987
No 455
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=76.58 E-value=3.3 Score=38.65 Aligned_cols=33 Identities=21% Similarity=0.138 Sum_probs=28.9
Q ss_pred cccCEEEECcch-HHHHHHHHHHhcC-CeEEEEec
Q 006387 87 KYFDFSVIGSGV-AGLCYALEVAKHG-TVAVITKA 119 (647)
Q Consensus 87 ~~~DVlVIGgG~-AGl~AA~~aa~~G-~V~llEk~ 119 (647)
....|+|||+|- .|..+|..|.+.| +|.++.+.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 357899999996 6999999999999 99999874
No 456
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=76.47 E-value=2.9 Score=46.15 Aligned_cols=33 Identities=30% Similarity=0.317 Sum_probs=29.8
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
...|+|+|+|.+|+.++..|...| +|+++|...
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 468999999999999999999999 999998764
No 457
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=76.38 E-value=3 Score=42.87 Aligned_cols=30 Identities=20% Similarity=0.560 Sum_probs=27.8
Q ss_pred CEEEECcchHHHHHHHHHHhcC-CeEEEEec
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKA 119 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~ 119 (647)
.|+|||+|.-|...|..|++.| +|+++++.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 4899999999999999999999 99999974
No 458
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.16 E-value=2.7 Score=46.05 Aligned_cols=31 Identities=26% Similarity=0.254 Sum_probs=28.3
Q ss_pred CEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
-|+|+|+|..|+++|..|++.| +|++.|+..
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4899999999999999999999 999998654
No 459
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=75.92 E-value=3.4 Score=43.78 Aligned_cols=38 Identities=29% Similarity=0.303 Sum_probs=33.3
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC--CeEEEEecCCCCCC
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESN 125 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~~~~~G~ 125 (647)
...|+|||.|..|..+|..|++.| +++|+|.+...-++
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sN 67 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSN 67 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccc
Confidence 467999999999999999999999 89999988765443
No 460
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=75.71 E-value=3.3 Score=42.95 Aligned_cols=31 Identities=16% Similarity=0.425 Sum_probs=27.8
Q ss_pred CEEEECcchHHHHHHHHHHhcC---CeEEEEecC
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG---TVAVITKAE 120 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G---~V~llEk~~ 120 (647)
.|.|||+|..|.+.|+.++..| .|+++|+..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 4899999999999999999988 589999754
No 461
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=75.47 E-value=4.1 Score=39.20 Aligned_cols=36 Identities=14% Similarity=0.172 Sum_probs=31.9
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC--CeEEEEecCCC
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPH 122 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~~~~ 122 (647)
.+.-|+|||.|.-|...|..|+..| +++|+|.....
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve 57 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVT 57 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCccc
Confidence 3578999999999999999999999 79999987653
No 462
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=75.04 E-value=3.6 Score=42.01 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=31.2
Q ss_pred CEEEECcchHHHHHHHHHHhcC--CeEEEEecCCCCCC
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESN 125 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~~~~~G~ 125 (647)
.|+|||+|.-|...|..|+..| +++++|.+....++
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sN 38 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSN 38 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccc
Confidence 3899999999999999999999 89999987664433
No 463
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=74.80 E-value=3.2 Score=42.52 Aligned_cols=31 Identities=32% Similarity=0.441 Sum_probs=28.6
Q ss_pred CEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
.|.|||+|.-|..-|..++..| +|+++|..+
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 5899999999999999999999 999999754
No 464
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=74.78 E-value=3.4 Score=46.50 Aligned_cols=38 Identities=18% Similarity=0.282 Sum_probs=33.1
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC--CeEEEEecCCCCCC
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESN 125 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~~~~~G~ 125 (647)
...|+|||+|.-|+.+|..|+..| +++++|.+...-++
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SN 377 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSN 377 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCc
Confidence 578999999999999999999999 89999987664433
No 465
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=74.58 E-value=3.7 Score=44.09 Aligned_cols=40 Identities=33% Similarity=0.301 Sum_probs=34.2
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC--CeEEEEecCCCCCCc
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESNT 126 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~~~~~G~t 126 (647)
....|+|||.|.-|..+|..|++.| +++|+|.....-++.
T Consensus 41 ~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL 82 (392)
T PRK07878 41 KNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNL 82 (392)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCccc
Confidence 3578999999999999999999999 899999887654443
No 466
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=74.34 E-value=3.7 Score=43.71 Aligned_cols=38 Identities=29% Similarity=0.298 Sum_probs=33.2
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC--CeEEEEecCCCCCC
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESN 125 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~~~~~G~ 125 (647)
...|+|||.|..|..+|..|++.| +++|+|.+...-++
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sN 80 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSN 80 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEcccc
Confidence 467999999999999999999999 89999988764443
No 467
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=74.25 E-value=3.5 Score=42.33 Aligned_cols=30 Identities=30% Similarity=0.298 Sum_probs=28.0
Q ss_pred CEEEECcchHHHHHHHHHHhcC-CeEEEEec
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKA 119 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~ 119 (647)
.|.|||+|.-|...|..++++| +|+++|+.
T Consensus 6 kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~ 36 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALAGYDVLLNDVS 36 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence 5999999999999999999999 99999864
No 468
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=74.02 E-value=3.7 Score=42.74 Aligned_cols=31 Identities=35% Similarity=0.542 Sum_probs=28.4
Q ss_pred CEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
-|.|||+|.-|..-|..++..| +|++.|..+
T Consensus 9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 4999999999999999999999 999999754
No 469
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=73.53 E-value=3.9 Score=43.69 Aligned_cols=38 Identities=26% Similarity=0.259 Sum_probs=32.9
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC--CeEEEEecCCCCC
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHES 124 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~~~~~G 124 (647)
....|+|||.|..|..+|..|++.| +++|+|.+...-.
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~s 173 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRS 173 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecch
Confidence 4568999999999999999999999 8999998765433
No 470
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=73.50 E-value=3.7 Score=42.16 Aligned_cols=31 Identities=35% Similarity=0.528 Sum_probs=28.3
Q ss_pred CEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
.|.|||+|.-|...|..+++.| +|+++|+.+
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 4899999999999999999999 999999753
No 471
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=73.30 E-value=8.3 Score=40.70 Aligned_cols=77 Identities=12% Similarity=0.135 Sum_probs=46.2
Q ss_pred HHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchH
Q 006387 218 RALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDG 297 (647)
Q Consensus 218 ~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~tGdg 297 (647)
+.-.+.+++ .||.|+.+..|.++.++ ++-.+....+|. .++.+.||+|+|--.+ .....-.|
T Consensus 397 ~wt~ekir~-~GV~V~pna~v~sv~~~--------~~nl~lkL~dG~--~l~tD~vVvavG~ePN-------~ela~~sg 458 (659)
T KOG1346|consen 397 QWTIEKIRK-GGVDVRPNAKVESVRKC--------CKNLVLKLSDGS--ELRTDLVVVAVGEEPN-------SELAEASG 458 (659)
T ss_pred HHHHHHHHh-cCceeccchhhhhhhhh--------ccceEEEecCCC--eeeeeeEEEEecCCCc-------hhhccccc
Confidence 334455665 59999999888777654 233334445675 5899999999995432 11122234
Q ss_pred HHHHHHcCCeecCcc
Q 006387 298 MAMAHRAQAVISNME 312 (647)
Q Consensus 298 ~~~a~~aGa~l~~~e 312 (647)
+.+-...|+-.+|.|
T Consensus 459 LeiD~~lGGfrvnae 473 (659)
T KOG1346|consen 459 LEIDEKLGGFRVNAE 473 (659)
T ss_pred ceeecccCcEEeehe
Confidence 444445555555544
No 472
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=73.24 E-value=4.2 Score=41.64 Aligned_cols=32 Identities=16% Similarity=0.313 Sum_probs=27.7
Q ss_pred cCEEEECcchHHHHHHHHHHhcC--CeEEEEecC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 120 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~~ 120 (647)
..|+|||+|.|+.++|..+++.| +|.|+.|..
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~ 158 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD 158 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 46999999999999899899988 788998853
No 473
>PRK06153 hypothetical protein; Provisional
Probab=72.79 E-value=3.7 Score=43.42 Aligned_cols=41 Identities=20% Similarity=0.122 Sum_probs=35.0
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC--CeEEEEecCCCCCCccc
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESNTNY 128 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~~~~~G~t~~ 128 (647)
...|+|||.|..|..++..|++.| +++|+|.+...-.+...
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnR 218 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFR 218 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEeccccccc
Confidence 468999999999999999999999 89999988775554433
No 474
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=72.61 E-value=4.5 Score=39.57 Aligned_cols=32 Identities=25% Similarity=0.368 Sum_probs=28.3
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC-CeEEEEec
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKA 119 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~ 119 (647)
...|||||||..++.=+..|.+.| +|+||...
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 346999999999999999999999 99999754
No 475
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=71.98 E-value=4.7 Score=41.02 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=28.7
Q ss_pred cCEEEECcchHHHHHHHHHHhcC--CeEEEEecC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 120 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~~ 120 (647)
..|+|+|+|.|+-++++.|++.| +++|+.|..
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~ 160 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTR 160 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 45999999999999999999999 699998753
No 476
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=71.94 E-value=4.4 Score=43.48 Aligned_cols=34 Identities=24% Similarity=0.146 Sum_probs=30.2
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCC
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~ 121 (647)
...|+|||.|..|..+|..|...| +|+++|..+.
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~ 229 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI 229 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence 447999999999999999999999 9999997653
No 477
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=71.93 E-value=4.8 Score=41.17 Aligned_cols=36 Identities=31% Similarity=0.326 Sum_probs=31.3
Q ss_pred CEEEECcchHHHHHHHHHHhcC--CeEEEEecCCCCCC
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESN 125 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~~~~~G~ 125 (647)
.|+|||+|.-|+..+..|+..| ++.|+|.+...-++
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SN 38 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSN 38 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccc
Confidence 3899999999999999999999 89999987765443
No 478
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=71.78 E-value=4.7 Score=41.48 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=30.1
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
...|+|||.|.+|..+|..|.+.| +|.++++..
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 467999999999999999999999 999998863
No 479
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=71.56 E-value=6.3 Score=40.37 Aligned_cols=32 Identities=28% Similarity=0.325 Sum_probs=28.2
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC--CeEEEEe
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG--TVAVITK 118 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G--~V~llEk 118 (647)
....|||.|+||.||.+-+.|.-.| +|+++|-
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~ 202 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDL 202 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeec
Confidence 3568999999999999999998889 8888884
No 480
>PRK07411 hypothetical protein; Validated
Probab=71.18 E-value=4.9 Score=43.17 Aligned_cols=39 Identities=26% Similarity=0.270 Sum_probs=33.7
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC--CeEEEEecCCCCCC
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESN 125 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~~~~~G~ 125 (647)
....|+|||.|.-|..+|..|+..| +++|+|.+...-.+
T Consensus 37 ~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sN 77 (390)
T PRK07411 37 KAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSN 77 (390)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccc
Confidence 3578999999999999999999999 89999988765443
No 481
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=70.94 E-value=5.1 Score=43.84 Aligned_cols=34 Identities=29% Similarity=0.411 Sum_probs=31.1
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCC
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~ 121 (647)
.-+|+|||+|.+|.-.|-+|++.| +|.++-|.+.
T Consensus 175 GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~ 209 (443)
T COG2072 175 GKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPP 209 (443)
T ss_pred CCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCC
Confidence 357999999999999999999999 9999998764
No 482
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=70.80 E-value=4.8 Score=44.09 Aligned_cols=31 Identities=26% Similarity=0.314 Sum_probs=28.5
Q ss_pred CEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
.|+|+|.|.+|+++|..|+++| +|++.|...
T Consensus 7 ~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~ 38 (445)
T PRK04308 7 KILVAGLGGTGISMIAYLRKNGAEVAAYDAEL 38 (445)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 5999999999999999999999 999998654
No 483
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=70.67 E-value=5.2 Score=41.38 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=31.0
Q ss_pred CEEEECcchHHHHHHHHHHhcC--CeEEEEecCCCCC
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHES 124 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~~~~~G 124 (647)
.|+|||+|.-|+..|..|+..| ++.|+|.+...-.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~s 37 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLS 37 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchh
Confidence 3899999999999999999999 8999998876443
No 484
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=70.48 E-value=4.5 Score=45.34 Aligned_cols=31 Identities=32% Similarity=0.470 Sum_probs=27.8
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEec
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKA 119 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~ 119 (647)
.-|+|+|+|.+|.++|+.|++.| +|+++.+.
T Consensus 380 k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~ 411 (529)
T PLN02520 380 KLFVVIGAGGAGKALAYGAKEKGARVVIANRT 411 (529)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 35899999999999999999999 99998763
No 485
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=70.05 E-value=5.4 Score=40.64 Aligned_cols=31 Identities=16% Similarity=0.371 Sum_probs=27.8
Q ss_pred cCEEEECcchHHHHHHHHHHhcC--CeEEEEec
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG--TVAVITKA 119 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~ 119 (647)
..|+|+|+|.+|.+++..|++.| +|+|+.|.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~ 156 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRT 156 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 46999999999999999999999 78888874
No 486
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=69.81 E-value=4.9 Score=37.11 Aligned_cols=33 Identities=27% Similarity=0.208 Sum_probs=27.4
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecCC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~ 121 (647)
..++|+|-|-.|-.+|..|+..| +|+|.|..+.
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi 57 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPI 57 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHH
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChH
Confidence 46999999999999999999999 9999998764
No 487
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=69.80 E-value=5.1 Score=42.22 Aligned_cols=31 Identities=32% Similarity=0.505 Sum_probs=28.5
Q ss_pred CEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
.|.|||+|..||+.|.-+|+.| .|+.+|...
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 5789999999999999999999 999999754
No 488
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=69.68 E-value=18 Score=39.61 Aligned_cols=56 Identities=13% Similarity=0.073 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCCeEEEEEEEecCCCeEEEEEcCeEEECCC
Q 006387 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASG 278 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtG 278 (647)
..+.++|.+.++. .|.+++.+++|.+|..++++ ++.+|.. .+|+ +++|+.||....
T Consensus 232 g~L~qal~r~~a~-~Gg~~~L~~~V~~I~~~~~g---~~~~V~~---~~Ge--~i~a~~VV~~~s 287 (443)
T PTZ00363 232 GGLPQAFSRLCAI-YGGTYMLNTPVDEVVFDENG---KVCGVKS---EGGE--VAKCKLVICDPS 287 (443)
T ss_pred HHHHHHHHHHHHH-cCcEEEcCCeEEEEEEcCCC---eEEEEEE---CCCc--EEECCEEEECcc
Confidence 3688888888887 48999999999999987555 6777765 3464 588999998544
No 489
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=69.46 E-value=5.4 Score=40.70 Aligned_cols=31 Identities=29% Similarity=0.422 Sum_probs=28.2
Q ss_pred CEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
.|.|||+|.-|...|..+++.| +|+++|..+
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 5999999999999999999999 999998643
No 490
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=69.38 E-value=4.5 Score=44.25 Aligned_cols=47 Identities=17% Similarity=0.319 Sum_probs=36.9
Q ss_pred cCceEECCCC-CcccCceeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHh
Q 006387 436 CGGVRAGLQG-ETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDH 491 (647)
Q Consensus 436 ~GGi~vD~~~-~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~ 491 (647)
.|-|.+|++. +|++|++||+||+. .| ..-+..|+-.|+.|++.+-.+
T Consensus 402 ~g~i~~~~~~~~ts~~~vfa~gD~~-~g--------~~~vv~ai~eGr~aak~i~~~ 449 (457)
T COG0493 402 RGRIKVDENLQQTSIPGVFAGGDAV-RG--------AALVVWAIAEGREAAKAIDKE 449 (457)
T ss_pred CCceecccccccccCCCeeeCceec-cc--------hhhhhhHHhhchHHHHhhhHH
Confidence 4678899998 99999999999997 23 234567888899988877633
No 491
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=69.22 E-value=5.7 Score=41.69 Aligned_cols=30 Identities=30% Similarity=0.490 Sum_probs=28.1
Q ss_pred CEEEECcchHHHHHHHHHHhcC-CeEEEEec
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKA 119 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~ 119 (647)
.|.|||+|.-|...|..+++.| +|.++++.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 5999999999999999999999 99999974
No 492
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=69.05 E-value=4.3 Score=44.62 Aligned_cols=32 Identities=25% Similarity=0.263 Sum_probs=29.0
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
-.|+|||+|..|+-.|..+++.+ +|.++.+..
T Consensus 205 k~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 205 EVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 35999999999999999999999 999998854
No 493
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=68.86 E-value=5 Score=40.56 Aligned_cols=32 Identities=19% Similarity=0.298 Sum_probs=28.8
Q ss_pred CEEEECcchHHHHHHHHHHhcC--CeEEEEecCC
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG--TVAVITKAEP 121 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~~~ 121 (647)
=|+|||+|..|..++-.|.+.| |+.|+|=...
T Consensus 76 yVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqV 109 (430)
T KOG2018|consen 76 YVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQV 109 (430)
T ss_pred EEEEEecCchhHHHHHHHHHhcCceEEEechhhc
Confidence 3999999999999999999999 8999986654
No 494
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=68.69 E-value=6.5 Score=40.12 Aligned_cols=36 Identities=17% Similarity=0.153 Sum_probs=32.2
Q ss_pred cccCEEEECcchHHHHHHHHHHhcC--CeEEEEecCCC
Q 006387 87 KYFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPH 122 (647)
Q Consensus 87 ~~~DVlVIGgG~AGl~AA~~aa~~G--~V~llEk~~~~ 122 (647)
.+..|+|||.|.-|..+|..|+..| +++|+|.....
T Consensus 18 ~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve 55 (286)
T cd01491 18 QKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCS 55 (286)
T ss_pred hcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccc
Confidence 4578999999999999999999999 89999987653
No 495
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=68.33 E-value=5.3 Score=44.34 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=27.5
Q ss_pred CEEEECcchHHHHHHHHHHhcC-CeEEEEec
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKA 119 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~ 119 (647)
.|+|+|.|..|++++..|...| +|++.|..
T Consensus 14 ~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 14 PVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 5999999999999999999999 99998854
No 496
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=68.33 E-value=6 Score=40.07 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=27.8
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEec
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKA 119 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~ 119 (647)
-.++|+|+|.+|.++|..+++.| +|.++++.
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~ 149 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRT 149 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 46999999999999999999999 89988764
No 497
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=68.21 E-value=6.2 Score=40.81 Aligned_cols=31 Identities=26% Similarity=0.546 Sum_probs=27.6
Q ss_pred CEEEECcchHHHHHHHHHHhcC---CeEEEEecC
Q 006387 90 DFSVIGSGVAGLCYALEVAKHG---TVAVITKAE 120 (647)
Q Consensus 90 DVlVIGgG~AGl~AA~~aa~~G---~V~llEk~~ 120 (647)
.|.|||+|..|.+.|+.|+..| .++|+|+..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 4899999999999999999988 589999854
No 498
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=67.71 E-value=5.9 Score=40.56 Aligned_cols=33 Identities=24% Similarity=0.279 Sum_probs=29.5
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC-CeEEEEecC
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~ 120 (647)
...|+|||.|..|...|..|...| +|.++++..
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 356999999999999999999999 999998753
No 499
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=67.63 E-value=5.8 Score=42.84 Aligned_cols=34 Identities=24% Similarity=0.081 Sum_probs=30.2
Q ss_pred ccCEEEECcchHHHHHHHHHHhcC-CeEEEEecCC
Q 006387 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 88 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~~~ 121 (647)
...|+|||.|..|..+|..|...| +|+++|..+.
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ 246 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI 246 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence 346999999999999999999999 9999997653
No 500
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=67.47 E-value=6.5 Score=37.89 Aligned_cols=31 Identities=23% Similarity=0.247 Sum_probs=27.7
Q ss_pred cCEEEECcchHHHHHHHHHHhcC-CeEEEEec
Q 006387 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKA 119 (647)
Q Consensus 89 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llEk~ 119 (647)
..|+|+|.|-.|..+|..|.+.| +|++.|..
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 45999999999999999999999 99987753
Done!