Query 006388
Match_columns 647
No_of_seqs 766 out of 4376
Neff 10.6
Searched_HMMs 46136
Date Thu Mar 28 22:34:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006388.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006388hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 4E-128 9E-133 1085.3 72.3 641 1-645 147-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 4E-125 8E-130 1036.7 70.6 612 4-647 85-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 1.8E-77 3.9E-82 674.5 49.7 615 2-642 117-746 (857)
4 PLN03218 maturation of RBCL 1; 100.0 2E-67 4.3E-72 581.0 59.5 505 3-514 367-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 3.5E-63 7.5E-68 547.3 55.9 508 39-561 367-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 5.5E-59 1.2E-63 512.3 40.8 489 137-642 85-583 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.3E-30 2.8E-35 300.5 55.8 493 5-509 362-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.6E-30 3.4E-35 299.7 54.9 491 5-506 396-899 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 1E-32 2.2E-37 223.5 7.0 106 514-637 2-116 (116)
10 PRK11447 cellulose synthase su 99.9 4.9E-22 1.1E-26 230.1 53.9 489 5-508 61-701 (1157)
11 PRK11447 cellulose synthase su 99.9 3.1E-21 6.8E-26 223.5 57.4 488 10-511 116-745 (1157)
12 KOG4626 O-linked N-acetylgluco 99.9 1.9E-21 4.1E-26 190.9 33.6 447 45-503 51-515 (966)
13 PRK09782 bacteriophage N4 rece 99.9 1.9E-19 4E-24 199.4 51.0 468 18-507 56-706 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 1.8E-20 3.8E-25 184.2 29.7 415 80-506 51-484 (966)
15 PRK09782 bacteriophage N4 rece 99.9 9.1E-18 2E-22 186.1 50.5 476 13-509 189-742 (987)
16 TIGR00990 3a0801s09 mitochondr 99.9 6.5E-18 1.4E-22 184.0 42.4 414 82-507 132-571 (615)
17 PRK11788 tetratricopeptide rep 99.9 6.9E-19 1.5E-23 182.0 30.5 290 220-514 46-354 (389)
18 PRK11788 tetratricopeptide rep 99.8 1E-18 2.3E-23 180.6 29.2 292 14-310 43-353 (389)
19 PRK15174 Vi polysaccharide exp 99.8 6.3E-17 1.4E-21 175.6 41.2 330 141-478 44-386 (656)
20 PRK10049 pgaA outer membrane p 99.8 3.3E-16 7.2E-21 173.8 45.9 398 45-478 18-461 (765)
21 TIGR00990 3a0801s09 mitochondr 99.8 3.7E-16 8E-21 170.3 43.8 421 9-477 130-575 (615)
22 PRK10049 pgaA outer membrane p 99.8 3.4E-16 7.4E-21 173.7 41.8 387 114-507 21-456 (765)
23 PRK14574 hmsH outer membrane p 99.8 5.1E-15 1.1E-19 161.1 46.1 423 52-480 44-520 (822)
24 PRK15174 Vi polysaccharide exp 99.8 7.9E-16 1.7E-20 167.1 39.3 347 17-369 16-380 (656)
25 KOG2002 TPR-containing nuclear 99.8 5.5E-15 1.2E-19 153.7 39.5 443 58-507 252-745 (1018)
26 KOG2002 TPR-containing nuclear 99.8 2.1E-14 4.5E-19 149.5 42.5 475 22-509 146-677 (1018)
27 PRK14574 hmsH outer membrane p 99.8 1.4E-14 3.1E-19 157.6 43.6 419 85-507 42-513 (822)
28 KOG4422 Uncharacterized conser 99.7 1.1E-13 2.5E-18 131.1 37.9 415 43-473 117-590 (625)
29 KOG2003 TPR repeat-containing 99.7 4.8E-14 1E-18 134.4 31.1 462 12-494 207-710 (840)
30 KOG2076 RNA polymerase III tra 99.7 7.9E-12 1.7E-16 129.8 43.0 497 6-507 173-849 (895)
31 KOG0495 HAT repeat protein [RN 99.6 7E-11 1.5E-15 118.2 43.9 490 16-524 386-895 (913)
32 KOG4422 Uncharacterized conser 99.6 4.3E-12 9.3E-17 120.6 31.9 361 4-438 205-587 (625)
33 KOG0495 HAT repeat protein [RN 99.6 3.9E-10 8.5E-15 113.0 46.7 458 26-506 366-845 (913)
34 KOG0547 Translocase of outer m 99.6 1E-11 2.2E-16 120.2 31.4 186 316-506 366-565 (606)
35 PF13429 TPR_15: Tetratricopep 99.6 1.3E-14 2.8E-19 142.1 11.1 253 248-505 16-275 (280)
36 KOG2076 RNA polymerase III tra 99.6 1.6E-11 3.4E-16 127.6 33.7 326 188-517 153-522 (895)
37 KOG1915 Cell cycle control pro 99.5 1.9E-09 4.2E-14 104.2 41.8 480 17-504 84-622 (677)
38 KOG4318 Bicoid mRNA stability 99.5 5.3E-11 1.1E-15 123.1 33.0 475 3-511 22-598 (1088)
39 KOG1915 Cell cycle control pro 99.5 1.3E-09 2.9E-14 105.3 39.2 456 41-506 72-584 (677)
40 PRK10747 putative protoheme IX 99.5 3.6E-11 7.9E-16 123.3 30.7 287 152-473 97-390 (398)
41 KOG1155 Anaphase-promoting com 99.5 3.7E-10 7.9E-15 109.0 34.6 356 106-475 162-538 (559)
42 KOG2003 TPR repeat-containing 99.5 4.1E-11 9E-16 114.6 27.2 424 78-507 202-689 (840)
43 PRK10747 putative protoheme IX 99.5 6.9E-11 1.5E-15 121.2 29.5 275 222-506 97-389 (398)
44 KOG1155 Anaphase-promoting com 99.5 1.8E-09 3.9E-14 104.3 36.4 315 183-506 173-494 (559)
45 TIGR00540 hemY_coli hemY prote 99.5 2.8E-10 6.2E-15 117.4 33.8 289 151-471 96-397 (409)
46 KOG1126 DNA-binding cell divis 99.5 1.5E-11 3.2E-16 124.0 22.8 276 224-508 334-621 (638)
47 TIGR00540 hemY_coli hemY prote 99.4 2E-10 4.3E-15 118.5 30.1 282 119-438 95-396 (409)
48 KOG1126 DNA-binding cell divis 99.4 2.6E-11 5.6E-16 122.3 22.2 277 189-477 334-624 (638)
49 PF13429 TPR_15: Tetratricopep 99.4 1.7E-12 3.7E-17 127.1 12.6 255 145-403 14-275 (280)
50 KOG1173 Anaphase-promoting com 99.4 2.7E-09 5.9E-14 105.7 33.4 262 239-506 243-517 (611)
51 COG3071 HemY Uncharacterized e 99.4 6.2E-09 1.3E-13 99.2 32.3 294 143-471 86-388 (400)
52 KOG2376 Signal recognition par 99.4 1.5E-08 3.2E-13 101.1 35.9 429 54-503 24-516 (652)
53 COG2956 Predicted N-acetylgluc 99.3 2E-09 4.3E-14 99.4 27.2 269 152-455 48-326 (389)
54 TIGR02521 type_IV_pilW type IV 99.3 2.8E-10 6.1E-15 108.3 23.2 198 308-506 29-231 (234)
55 COG2956 Predicted N-acetylgluc 99.3 1.3E-09 2.9E-14 100.5 25.1 221 19-270 48-279 (389)
56 KOG4162 Predicted calmodulin-b 99.3 6.4E-08 1.4E-12 99.7 39.1 127 379-507 653-783 (799)
57 KOG4318 Bicoid mRNA stability 99.3 9E-11 1.9E-15 121.4 18.7 267 261-567 11-278 (1088)
58 KOG2047 mRNA splicing factor [ 99.3 3.4E-07 7.5E-12 92.3 42.9 379 109-493 249-709 (835)
59 KOG2047 mRNA splicing factor [ 99.3 2.1E-07 4.5E-12 93.8 41.2 490 7-507 103-687 (835)
60 PF13041 PPR_2: PPR repeat fam 99.3 5E-12 1.1E-16 86.8 5.4 50 4-54 1-50 (50)
61 KOG3785 Uncharacterized conser 99.3 1.4E-08 3E-13 94.8 28.7 469 13-513 29-520 (557)
62 COG3071 HemY Uncharacterized e 99.3 1E-08 2.3E-13 97.7 28.1 282 55-370 97-390 (400)
63 KOG1840 Kinesin light chain [C 99.2 2.3E-09 5E-14 109.5 24.5 230 276-505 200-477 (508)
64 PF13041 PPR_2: PPR repeat fam 99.2 2.1E-11 4.6E-16 83.6 6.8 50 339-388 1-50 (50)
65 KOG1174 Anaphase-promoting com 99.2 1E-07 2.2E-12 91.1 32.8 305 170-480 190-507 (564)
66 PRK12370 invasion protein regu 99.2 3.4E-09 7.3E-14 113.7 25.2 260 239-508 255-536 (553)
67 KOG1173 Anaphase-promoting com 99.2 2.5E-07 5.5E-12 92.1 35.1 276 206-485 241-530 (611)
68 KOG0985 Vesicle coat protein c 99.2 9.1E-07 2E-11 93.4 40.6 465 9-504 609-1246(1666)
69 TIGR02521 type_IV_pilW type IV 99.1 2E-08 4.4E-13 95.4 23.9 199 240-473 31-232 (234)
70 KOG1174 Anaphase-promoting com 99.1 1.3E-06 2.9E-11 83.6 34.3 261 238-506 230-499 (564)
71 PRK12370 invasion protein regu 99.1 8E-09 1.7E-13 110.8 22.1 242 56-305 275-536 (553)
72 PRK11189 lipoprotein NlpI; Pro 99.1 1.5E-08 3.3E-13 99.4 22.1 212 289-509 40-267 (296)
73 KOG3785 Uncharacterized conser 99.1 1.2E-06 2.7E-11 82.1 32.7 442 51-509 31-492 (557)
74 KOG0547 Translocase of outer m 99.1 1.2E-07 2.7E-12 92.5 26.7 340 142-506 118-490 (606)
75 KOG1129 TPR repeat-containing 99.1 6.4E-09 1.4E-13 96.0 16.8 229 244-507 227-458 (478)
76 KOG4162 Predicted calmodulin-b 99.1 2.7E-06 5.9E-11 88.0 36.8 456 16-479 237-789 (799)
77 PF12569 NARP1: NMDA receptor- 99.0 3E-06 6.6E-11 88.1 36.2 406 87-503 14-516 (517)
78 KOG1840 Kinesin light chain [C 99.0 6.5E-08 1.4E-12 99.1 23.0 233 208-471 198-477 (508)
79 KOG1156 N-terminal acetyltrans 99.0 8.7E-06 1.9E-10 82.8 37.2 454 2-469 4-507 (700)
80 COG3063 PilF Tfp pilus assembl 99.0 3.2E-08 6.9E-13 87.5 17.3 161 344-509 38-204 (250)
81 KOG1156 N-terminal acetyltrans 99.0 6.2E-06 1.3E-10 83.8 34.7 424 45-509 11-470 (700)
82 KOG2376 Signal recognition par 99.0 1.2E-05 2.6E-10 80.9 36.2 439 13-470 19-517 (652)
83 KOG4340 Uncharacterized conser 99.0 5.1E-07 1.1E-11 82.6 23.7 314 9-336 13-336 (459)
84 PRK11189 lipoprotein NlpI; Pro 98.9 2.8E-07 6.2E-12 90.5 23.7 218 255-480 41-272 (296)
85 KOG1129 TPR repeat-containing 98.9 9.7E-08 2.1E-12 88.4 16.8 227 212-443 226-461 (478)
86 KOG3616 Selective LIM binding 98.9 1.4E-05 3.1E-10 81.9 32.9 220 249-503 741-962 (1636)
87 KOG1127 TPR repeat-containing 98.9 5.2E-06 1.1E-10 88.1 30.2 465 21-505 473-994 (1238)
88 KOG3616 Selective LIM binding 98.8 2.9E-05 6.2E-10 79.8 33.4 378 81-507 619-1024(1636)
89 KOG1127 TPR repeat-containing 98.8 1E-05 2.2E-10 86.0 29.4 493 7-505 493-1102(1238)
90 COG3063 PilF Tfp pilus assembl 98.8 2.7E-06 5.8E-11 75.6 21.1 125 242-369 37-167 (250)
91 KOG1125 TPR repeat-containing 98.8 2.6E-07 5.7E-12 92.4 16.4 218 286-506 296-526 (579)
92 KOG0985 Vesicle coat protein c 98.8 7.5E-05 1.6E-09 79.6 34.7 332 138-505 983-1368(1666)
93 PF12569 NARP1: NMDA receptor- 98.8 1E-05 2.2E-10 84.2 28.7 126 378-506 196-333 (517)
94 KOG3617 WD40 and TPR repeat-co 98.8 0.00012 2.6E-09 76.4 35.4 119 7-135 758-885 (1416)
95 KOG0548 Molecular co-chaperone 98.8 6.9E-06 1.5E-10 81.8 25.5 214 280-507 229-455 (539)
96 cd05804 StaR_like StaR_like; a 98.8 1.7E-05 3.6E-10 80.9 30.0 257 248-508 51-337 (355)
97 PF04733 Coatomer_E: Coatomer 98.8 1.3E-07 2.9E-12 91.3 13.5 247 218-506 10-264 (290)
98 KOG3617 WD40 and TPR repeat-co 98.7 4E-05 8.6E-10 79.8 31.1 227 241-502 913-1169(1416)
99 KOG4340 Uncharacterized conser 98.7 1.6E-05 3.5E-10 73.1 24.9 406 80-507 13-443 (459)
100 PF04733 Coatomer_E: Coatomer 98.7 7.9E-07 1.7E-11 86.0 17.9 217 213-438 39-262 (290)
101 KOG0548 Molecular co-chaperone 98.6 3.9E-05 8.5E-10 76.6 27.0 430 14-490 10-472 (539)
102 KOG0624 dsRNA-activated protei 98.6 5.1E-05 1.1E-09 71.3 25.8 308 142-478 41-375 (504)
103 cd05804 StaR_like StaR_like; a 98.6 0.00013 2.8E-09 74.4 32.0 196 140-337 7-213 (355)
104 PRK04841 transcriptional regul 98.6 4.1E-05 8.9E-10 88.6 31.7 323 186-508 386-761 (903)
105 PRK04841 transcriptional regul 98.6 0.00013 2.9E-09 84.4 35.3 359 116-476 349-763 (903)
106 KOG1070 rRNA processing protei 98.6 4.5E-06 9.7E-11 91.5 20.6 201 307-511 1455-1667(1710)
107 TIGR03302 OM_YfiO outer membra 98.6 5.8E-06 1.3E-10 78.7 19.2 179 309-507 32-232 (235)
108 KOG1914 mRNA cleavage and poly 98.6 0.0012 2.7E-08 66.1 36.3 128 4-136 18-165 (656)
109 PRK10370 formate-dependent nit 98.6 4.2E-06 9.2E-11 76.4 16.7 119 389-509 52-175 (198)
110 KOG0624 dsRNA-activated protei 98.5 0.00047 1E-08 65.0 29.3 305 115-443 45-373 (504)
111 PF12854 PPR_1: PPR repeat 98.5 1.5E-07 3.2E-12 57.8 4.2 33 204-236 2-34 (34)
112 PRK15359 type III secretion sy 98.5 3.4E-06 7.3E-11 72.8 13.7 120 363-488 15-136 (144)
113 PLN02789 farnesyltranstransfer 98.5 7.2E-05 1.6E-09 73.5 23.8 224 242-504 39-299 (320)
114 PRK15359 type III secretion sy 98.5 7.6E-06 1.6E-10 70.6 15.2 99 408-508 22-122 (144)
115 PRK15363 pathogenicity island 98.4 5.6E-06 1.2E-10 70.2 13.1 118 412-552 35-154 (157)
116 PF12854 PPR_1: PPR repeat 98.4 4.3E-07 9.3E-12 55.8 4.5 32 407-438 2-33 (34)
117 KOG1125 TPR repeat-containing 98.4 6.1E-05 1.3E-09 75.9 21.5 214 185-403 296-525 (579)
118 COG5010 TadD Flp pilus assembl 98.4 1.8E-05 3.9E-10 72.0 16.1 136 372-509 62-199 (257)
119 TIGR03302 OM_YfiO outer membra 98.4 4E-05 8.8E-10 72.9 18.7 182 274-475 32-234 (235)
120 KOG1128 Uncharacterized conser 98.4 5.1E-05 1.1E-09 78.4 19.9 192 307-507 395-616 (777)
121 KOG1128 Uncharacterized conser 98.3 1.7E-05 3.7E-10 81.8 16.3 155 343-509 400-584 (777)
122 PRK10370 formate-dependent nit 98.3 6.1E-05 1.3E-09 68.8 18.1 156 316-482 22-182 (198)
123 KOG1070 rRNA processing protei 98.3 0.00018 3.9E-09 79.5 23.5 217 174-391 1458-1686(1710)
124 COG5010 TadD Flp pilus assembl 98.3 9.3E-05 2E-09 67.5 17.8 153 347-502 72-226 (257)
125 PRK15179 Vi polysaccharide bio 98.3 0.0001 2.2E-09 80.0 21.3 161 340-510 85-248 (694)
126 PLN02789 farnesyltranstransfer 98.3 0.00014 3.1E-09 71.4 20.3 139 8-149 39-186 (320)
127 PRK15179 Vi polysaccharide bio 98.2 0.00019 4.2E-09 77.8 22.3 143 305-451 81-229 (694)
128 TIGR00756 PPR pentatricopeptid 98.2 2.7E-06 5.9E-11 53.1 4.5 35 7-42 1-35 (35)
129 COG4783 Putative Zn-dependent 98.2 0.00017 3.8E-09 71.5 18.9 115 388-504 318-434 (484)
130 TIGR02552 LcrH_SycD type III s 98.2 2.4E-05 5.1E-10 67.1 11.6 96 412-507 17-114 (135)
131 KOG2053 Mitochondrial inherita 98.2 0.017 3.6E-07 61.9 35.1 68 446-513 438-508 (932)
132 KOG3081 Vesicle coat complex C 98.2 0.0015 3.3E-08 59.7 22.9 175 297-478 95-276 (299)
133 TIGR00756 PPR pentatricopeptid 98.2 3.6E-06 7.9E-11 52.5 4.5 35 140-174 1-35 (35)
134 PRK14720 transcript cleavage f 98.1 0.00026 5.6E-09 77.6 20.8 148 312-489 118-268 (906)
135 PF13812 PPR_3: Pentatricopept 98.1 5.4E-06 1.2E-10 51.3 4.1 34 6-40 1-34 (34)
136 KOG1914 mRNA cleavage and poly 98.0 0.02 4.4E-07 57.8 34.9 427 74-504 17-536 (656)
137 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 8.4E-05 1.8E-09 74.5 13.7 122 379-505 172-295 (395)
138 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00022 4.9E-09 71.5 16.5 127 311-442 170-298 (395)
139 COG4783 Putative Zn-dependent 98.0 0.001 2.2E-08 66.2 20.4 140 347-508 312-455 (484)
140 PF13812 PPR_3: Pentatricopept 98.0 1E-05 2.2E-10 50.1 4.4 34 139-172 1-34 (34)
141 PF01535 PPR: PPR repeat; Int 97.9 1.1E-05 2.5E-10 48.6 3.7 31 7-37 1-31 (31)
142 PRK14720 transcript cleavage f 97.9 0.0087 1.9E-07 66.0 27.8 82 276-370 117-198 (906)
143 TIGR02552 LcrH_SycD type III s 97.9 0.00026 5.7E-09 60.5 13.5 113 363-479 5-120 (135)
144 PF09976 TPR_21: Tetratricopep 97.9 0.00039 8.4E-09 60.3 14.2 114 389-503 24-143 (145)
145 PF04840 Vps16_C: Vps16, C-ter 97.9 0.034 7.4E-07 54.7 28.4 121 314-454 181-301 (319)
146 cd00189 TPR Tetratricopeptide 97.8 0.0002 4.4E-09 56.4 9.8 92 415-506 3-96 (100)
147 KOG3060 Uncharacterized conser 97.8 0.0018 3.8E-08 58.9 16.0 182 323-508 25-221 (289)
148 PF12895 Apc3: Anaphase-promot 97.8 2.5E-05 5.5E-10 60.4 3.8 77 426-503 3-83 (84)
149 KOG3081 Vesicle coat complex C 97.8 0.014 3E-07 53.7 21.3 141 282-431 115-260 (299)
150 KOG3060 Uncharacterized conser 97.8 0.0038 8.1E-08 56.8 17.5 194 287-483 24-230 (289)
151 PF01535 PPR: PPR repeat; Int 97.7 3.8E-05 8.3E-10 46.2 3.6 31 140-170 1-31 (31)
152 PF13414 TPR_11: TPR repeat; P 97.7 6.9E-05 1.5E-09 55.4 5.7 64 443-506 2-66 (69)
153 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00061 1.3E-08 56.7 12.1 98 382-479 8-111 (119)
154 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00042 9.2E-09 57.6 10.6 96 413-508 3-106 (119)
155 PF09976 TPR_21: Tetratricopep 97.7 0.0023 5.1E-08 55.3 15.5 123 344-470 15-144 (145)
156 PLN03088 SGT1, suppressor of 97.7 0.00053 1.2E-08 69.1 12.4 97 385-483 11-109 (356)
157 PRK02603 photosystem I assembl 97.6 0.0015 3.2E-08 58.5 13.6 131 340-493 34-166 (172)
158 KOG0553 TPR repeat-containing 97.6 0.00046 1E-08 64.3 10.1 99 386-487 91-192 (304)
159 PF13432 TPR_16: Tetratricopep 97.6 0.00016 3.5E-09 52.6 5.8 57 450-506 3-59 (65)
160 PRK10153 DNA-binding transcrip 97.6 0.0026 5.5E-08 67.1 16.9 38 338-377 334-376 (517)
161 COG3898 Uncharacterized membra 97.6 0.047 1E-06 53.0 23.4 242 252-507 132-392 (531)
162 KOG0550 Molecular chaperone (D 97.6 0.0016 3.5E-08 63.2 13.5 154 349-508 177-351 (486)
163 PRK02603 photosystem I assembl 97.6 0.00076 1.6E-08 60.4 10.9 81 413-493 36-121 (172)
164 KOG0553 TPR repeat-containing 97.6 0.00022 4.8E-09 66.4 7.3 87 420-506 89-177 (304)
165 CHL00033 ycf3 photosystem I as 97.5 0.00074 1.6E-08 60.2 10.4 94 411-504 34-139 (168)
166 PF07079 DUF1347: Protein of u 97.5 0.12 2.6E-06 51.4 34.2 418 16-449 16-530 (549)
167 PLN03088 SGT1, suppressor of 97.5 0.0014 2.9E-08 66.2 12.9 104 347-454 8-113 (356)
168 PRK15331 chaperone protein Sic 97.4 0.0035 7.5E-08 53.7 12.4 89 418-506 43-133 (165)
169 KOG1538 Uncharacterized conser 97.4 0.039 8.5E-07 56.9 21.7 235 140-443 557-805 (1081)
170 PF13432 TPR_16: Tetratricopep 97.4 0.00047 1E-08 50.1 6.4 61 418-478 3-65 (65)
171 KOG2280 Vacuolar assembly/sort 97.4 0.23 5.1E-06 52.5 27.8 335 71-437 426-795 (829)
172 PF05843 Suf: Suppressor of fo 97.4 0.0046 1E-07 60.0 15.0 143 342-488 2-150 (280)
173 COG4235 Cytochrome c biogenesi 97.4 0.0022 4.8E-08 60.3 11.9 106 408-513 152-262 (287)
174 cd00189 TPR Tetratricopeptide 97.4 0.002 4.4E-08 50.4 10.5 62 414-475 36-99 (100)
175 PF14938 SNAP: Soluble NSF att 97.4 0.017 3.7E-07 56.4 18.2 111 316-438 100-222 (282)
176 KOG2053 Mitochondrial inherita 97.3 0.35 7.5E-06 52.4 41.2 213 17-235 20-252 (932)
177 PF12895 Apc3: Anaphase-promot 97.3 0.00086 1.9E-08 51.7 6.9 80 354-437 2-83 (84)
178 KOG2041 WD40 repeat protein [G 97.3 0.31 6.8E-06 51.0 27.6 41 413-453 1022-1066(1189)
179 PF14559 TPR_19: Tetratricopep 97.2 0.00035 7.6E-09 51.4 3.8 52 455-506 2-53 (68)
180 PF13371 TPR_9: Tetratricopept 97.2 0.0008 1.7E-08 50.3 5.7 58 451-508 2-59 (73)
181 COG4700 Uncharacterized protei 97.2 0.0081 1.8E-07 51.9 12.1 100 407-506 84-188 (251)
182 CHL00033 ycf3 photosystem I as 97.2 0.02 4.3E-07 51.0 15.2 81 341-423 35-117 (168)
183 PRK10866 outer membrane biogen 97.2 0.036 7.8E-07 52.5 17.5 52 52-104 42-96 (243)
184 PF13431 TPR_17: Tetratricopep 97.2 0.00023 4.9E-09 43.6 1.7 33 467-499 2-34 (34)
185 COG4700 Uncharacterized protei 97.2 0.069 1.5E-06 46.4 16.9 133 372-506 85-221 (251)
186 KOG1130 Predicted G-alpha GTPa 97.1 0.0035 7.6E-08 60.8 10.2 128 378-505 197-342 (639)
187 PF13414 TPR_11: TPR repeat; P 97.1 0.00099 2.1E-08 49.1 5.3 65 411-475 2-69 (69)
188 KOG2041 WD40 repeat protein [G 97.1 0.53 1.1E-05 49.4 26.5 372 74-505 689-1084(1189)
189 PF08579 RPM2: Mitochondrial r 97.0 0.015 3.2E-07 46.1 11.0 79 345-424 29-116 (120)
190 PF14559 TPR_19: Tetratricopep 97.0 0.00096 2.1E-08 49.0 4.3 49 388-438 3-51 (68)
191 PF08579 RPM2: Mitochondrial r 97.0 0.0088 1.9E-07 47.3 9.6 81 242-322 27-116 (120)
192 PF14938 SNAP: Soluble NSF att 97.0 0.06 1.3E-06 52.5 17.5 116 346-476 99-228 (282)
193 PF05843 Suf: Suppressor of fo 96.9 0.0089 1.9E-07 58.1 11.3 129 377-507 2-136 (280)
194 PRK10153 DNA-binding transcrip 96.9 0.032 7E-07 58.9 16.0 134 371-508 332-483 (517)
195 PF10037 MRP-S27: Mitochondria 96.9 0.015 3.2E-07 59.0 12.6 118 270-387 61-184 (429)
196 PF10037 MRP-S27: Mitochondria 96.9 0.019 4.1E-07 58.2 13.3 119 170-288 62-186 (429)
197 PRK15363 pathogenicity island 96.8 0.051 1.1E-06 46.5 13.5 93 314-407 39-134 (157)
198 KOG0550 Molecular chaperone (D 96.8 0.34 7.3E-06 47.8 20.4 87 349-438 257-347 (486)
199 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.0045 9.7E-08 62.0 8.1 62 412-473 75-141 (453)
200 PF04840 Vps16_C: Vps16, C-ter 96.8 0.63 1.4E-05 45.9 30.0 279 7-332 1-284 (319)
201 PRK10803 tol-pal system protei 96.8 0.0098 2.1E-07 56.7 9.9 92 415-506 146-245 (263)
202 PRK10866 outer membrane biogen 96.8 0.082 1.8E-06 50.0 16.0 173 316-505 38-239 (243)
203 COG3898 Uncharacterized membra 96.8 0.64 1.4E-05 45.5 26.9 285 141-438 84-389 (531)
204 PF12688 TPR_5: Tetratrico pep 96.7 0.018 3.9E-07 47.4 9.9 87 419-505 8-102 (120)
205 PF06239 ECSIT: Evolutionarily 96.7 0.018 3.9E-07 51.6 10.4 97 330-427 34-153 (228)
206 PF13428 TPR_14: Tetratricopep 96.7 0.0033 7.1E-08 41.3 4.4 42 445-486 2-43 (44)
207 KOG2796 Uncharacterized conser 96.7 0.094 2E-06 48.2 14.7 167 212-380 139-323 (366)
208 PRK10803 tol-pal system protei 96.7 0.035 7.5E-07 53.0 12.9 101 378-478 145-251 (263)
209 PF03704 BTAD: Bacterial trans 96.7 0.014 3.1E-07 50.5 9.6 68 446-513 64-136 (146)
210 PF13371 TPR_9: Tetratricopept 96.7 0.0063 1.4E-07 45.3 6.4 63 420-482 3-67 (73)
211 PF12688 TPR_5: Tetratrico pep 96.6 0.067 1.4E-06 44.0 12.2 92 246-337 7-102 (120)
212 KOG2796 Uncharacterized conser 96.6 0.079 1.7E-06 48.7 13.5 135 143-279 181-323 (366)
213 PF06239 ECSIT: Evolutionarily 96.6 0.027 5.9E-07 50.5 10.3 96 230-325 35-153 (228)
214 PF13281 DUF4071: Domain of un 96.5 0.34 7.5E-06 48.2 18.8 160 315-477 146-338 (374)
215 KOG1538 Uncharacterized conser 96.4 0.47 1E-05 49.3 19.5 53 277-338 749-801 (1081)
216 KOG0543 FKBP-type peptidyl-pro 96.3 0.042 9.2E-07 53.9 11.1 63 444-506 257-319 (397)
217 PF07079 DUF1347: Protein of u 96.2 1.6 3.5E-05 43.8 34.3 70 433-503 445-520 (549)
218 PF09205 DUF1955: Domain of un 96.2 0.34 7.4E-06 39.6 13.5 140 352-510 13-152 (161)
219 KOG1258 mRNA processing protei 96.1 2.2 4.7E-05 44.5 30.8 181 308-493 295-490 (577)
220 KOG2066 Vacuolar assembly/sort 96.1 2.6 5.7E-05 45.3 24.8 100 84-186 363-467 (846)
221 PF13424 TPR_12: Tetratricopep 96.0 0.0087 1.9E-07 45.2 4.1 61 445-505 6-73 (78)
222 COG4235 Cytochrome c biogenesi 96.0 0.14 3E-06 48.6 12.3 110 340-452 155-268 (287)
223 PF13525 YfiO: Outer membrane 96.0 0.55 1.2E-05 43.2 16.3 49 450-498 147-198 (203)
224 KOG1130 Predicted G-alpha GTPa 95.9 0.061 1.3E-06 52.5 9.9 255 148-403 26-342 (639)
225 KOG4555 TPR repeat-containing 95.9 0.063 1.4E-06 43.6 8.3 90 420-509 51-146 (175)
226 PF13424 TPR_12: Tetratricopep 95.8 0.013 2.7E-07 44.3 4.2 59 414-472 7-74 (78)
227 PF12921 ATP13: Mitochondrial 95.8 0.12 2.7E-06 42.9 10.3 49 372-420 48-96 (126)
228 COG0457 NrfG FOG: TPR repeat [ 95.6 1.9 4.1E-05 40.0 26.8 194 311-506 60-264 (291)
229 PF13525 YfiO: Outer membrane 95.6 0.59 1.3E-05 43.0 14.9 142 346-507 10-170 (203)
230 COG5107 RNA14 Pre-mRNA 3'-end 95.5 3 6.6E-05 41.8 33.0 77 5-85 41-117 (660)
231 KOG0543 FKBP-type peptidyl-pro 95.5 0.21 4.5E-06 49.3 12.0 138 348-507 215-355 (397)
232 PRK11906 transcriptional regul 95.5 1.2 2.7E-05 45.2 17.5 158 342-502 252-431 (458)
233 PF12921 ATP13: Mitochondrial 95.5 0.12 2.6E-06 43.0 8.9 50 407-456 47-100 (126)
234 PLN03098 LPA1 LOW PSII ACCUMUL 95.3 0.12 2.6E-06 52.1 9.8 58 378-438 77-138 (453)
235 KOG1920 IkappaB kinase complex 95.3 2.8 6.1E-05 47.3 20.5 157 223-438 894-1052(1265)
236 KOG2280 Vacuolar assembly/sort 95.2 5.5 0.00012 42.8 29.4 333 34-398 425-792 (829)
237 PF13512 TPR_18: Tetratricopep 95.2 0.38 8.3E-06 40.5 10.9 57 422-478 20-81 (142)
238 KOG1585 Protein required for f 95.0 2.6 5.6E-05 38.8 16.1 88 414-502 152-251 (308)
239 COG1729 Uncharacterized protei 94.9 0.28 6E-06 45.9 10.2 57 450-506 184-243 (262)
240 KOG2114 Vacuolar assembly/sort 94.8 6.4 0.00014 42.9 21.0 141 14-166 376-517 (933)
241 PF03704 BTAD: Bacterial trans 94.7 0.096 2.1E-06 45.3 6.7 69 9-79 65-138 (146)
242 COG5107 RNA14 Pre-mRNA 3'-end 94.7 5.3 0.00012 40.2 30.2 134 341-477 397-535 (660)
243 KOG1941 Acetylcholine receptor 94.7 0.42 9.1E-06 46.2 11.1 162 343-504 85-272 (518)
244 PRK11906 transcriptional regul 94.7 0.47 1E-05 48.1 12.0 116 391-506 273-400 (458)
245 COG1729 Uncharacterized protei 94.6 0.36 7.7E-06 45.2 10.3 91 389-479 154-250 (262)
246 PF04184 ST7: ST7 protein; In 94.6 4.1 8.9E-05 41.7 18.2 15 463-477 365-379 (539)
247 PF13281 DUF4071: Domain of un 94.6 3.6 7.8E-05 41.2 17.8 72 214-285 146-227 (374)
248 KOG3941 Intermediate in Toll s 94.6 0.34 7.4E-06 45.2 9.8 100 328-428 52-174 (406)
249 COG0457 NrfG FOG: TPR repeat [ 94.5 4 8.7E-05 37.7 25.8 196 277-476 61-268 (291)
250 PF13512 TPR_18: Tetratricopep 94.4 1.3 2.8E-05 37.4 12.1 18 460-477 115-132 (142)
251 COG3118 Thioredoxin domain-con 94.4 2.1 4.5E-05 40.7 14.6 120 385-507 143-265 (304)
252 PF04184 ST7: ST7 protein; In 94.3 1.2 2.6E-05 45.4 13.8 144 352-509 179-326 (539)
253 PF00515 TPR_1: Tetratricopept 94.3 0.066 1.4E-06 32.6 3.4 32 445-476 2-33 (34)
254 KOG2610 Uncharacterized conser 94.3 1.2 2.6E-05 42.7 12.9 113 323-438 116-235 (491)
255 PF04053 Coatomer_WDAD: Coatom 94.2 0.82 1.8E-05 47.3 13.0 135 350-509 270-404 (443)
256 smart00299 CLH Clathrin heavy 94.2 3 6.5E-05 35.5 14.7 42 346-388 12-53 (140)
257 PF07719 TPR_2: Tetratricopept 94.1 0.1 2.3E-06 31.6 4.1 33 445-477 2-34 (34)
258 KOG2610 Uncharacterized conser 94.1 0.84 1.8E-05 43.8 11.5 84 19-104 116-202 (491)
259 PF04053 Coatomer_WDAD: Coatom 94.1 1.4 3.1E-05 45.6 14.4 132 78-234 296-427 (443)
260 smart00299 CLH Clathrin heavy 93.9 2.9 6.3E-05 35.6 14.2 45 8-54 9-53 (140)
261 KOG1920 IkappaB kinase complex 93.6 16 0.00035 41.6 23.6 92 217-337 960-1053(1265)
262 PRK11619 lytic murein transgly 93.5 14 0.00031 40.5 31.2 75 214-290 104-178 (644)
263 KOG3941 Intermediate in Toll s 93.3 0.87 1.9E-05 42.6 9.9 98 228-325 53-173 (406)
264 PRK15331 chaperone protein Sic 93.1 0.4 8.7E-06 41.4 7.1 84 52-136 47-133 (165)
265 KOG4555 TPR repeat-containing 93.1 0.72 1.6E-05 37.7 8.0 88 386-475 53-146 (175)
266 COG4105 ComL DNA uptake lipopr 93.0 7.8 0.00017 36.2 17.1 58 449-506 172-232 (254)
267 COG4105 ComL DNA uptake lipopr 92.9 8.1 0.00018 36.1 19.3 170 308-478 33-238 (254)
268 PF13428 TPR_14: Tetratricopep 92.8 0.2 4.3E-06 32.7 3.9 39 8-48 3-41 (44)
269 COG3118 Thioredoxin domain-con 92.8 7.5 0.00016 37.1 15.4 142 350-493 143-287 (304)
270 PRK09687 putative lyase; Provi 92.6 11 0.00023 36.7 26.0 74 309-387 205-278 (280)
271 PF02259 FAT: FAT domain; Int 92.4 13 0.00029 37.4 19.3 148 340-489 145-303 (352)
272 PF10300 DUF3808: Protein of u 92.3 7.4 0.00016 41.0 16.8 159 345-506 192-375 (468)
273 KOG2114 Vacuolar assembly/sort 91.7 8.5 0.00018 42.0 16.0 51 348-399 404-454 (933)
274 PF13176 TPR_7: Tetratricopept 91.6 0.3 6.6E-06 30.2 3.4 26 480-505 1-26 (36)
275 PF10300 DUF3808: Protein of u 91.5 21 0.00045 37.7 23.3 158 142-302 191-374 (468)
276 KOG4234 TPR repeat-containing 91.5 0.88 1.9E-05 40.3 7.3 88 420-507 103-197 (271)
277 COG3629 DnrI DNA-binding trans 91.1 0.91 2E-05 43.3 7.6 62 445-506 154-215 (280)
278 PF00637 Clathrin: Region in C 91.0 0.43 9.4E-06 40.9 5.1 84 48-134 13-96 (143)
279 KOG1464 COP9 signalosome, subu 90.8 14 0.00031 34.6 16.8 229 224-457 42-317 (440)
280 PF07035 Mic1: Colon cancer-as 90.8 8.9 0.00019 33.6 12.9 58 141-202 91-148 (167)
281 PF08631 SPO22: Meiosis protei 90.3 19 0.0004 35.0 23.3 17 454-470 256-272 (278)
282 PF13181 TPR_8: Tetratricopept 90.3 0.42 9.1E-06 28.9 3.2 31 446-476 3-33 (34)
283 COG3629 DnrI DNA-binding trans 90.2 2.2 4.7E-05 40.8 9.3 76 310-385 153-236 (280)
284 PF02259 FAT: FAT domain; Int 90.0 23 0.0005 35.6 17.8 67 443-509 145-215 (352)
285 PF09613 HrpB1_HrpK: Bacterial 89.5 13 0.00028 32.1 12.8 89 384-475 18-108 (160)
286 PF07035 Mic1: Colon cancer-as 89.3 13 0.00029 32.5 12.7 134 26-167 14-148 (167)
287 PF10345 Cohesin_load: Cohesin 89.3 38 0.00083 37.2 31.9 23 483-505 582-604 (608)
288 PF13176 TPR_7: Tetratricopept 89.1 0.56 1.2E-05 29.0 3.1 28 446-473 1-28 (36)
289 PRK09687 putative lyase; Provi 88.5 25 0.00054 34.1 27.3 80 207-288 35-118 (280)
290 PF13170 DUF4003: Protein of u 88.4 11 0.00024 36.8 13.1 62 358-420 160-225 (297)
291 PF09205 DUF1955: Domain of un 88.2 14 0.0003 30.7 14.5 63 344-408 89-151 (161)
292 KOG0890 Protein kinase of the 88.0 81 0.0018 39.4 31.6 64 444-509 1670-1733(2382)
293 COG4785 NlpI Lipoprotein NlpI, 88.0 21 0.00044 32.5 14.0 163 340-509 98-268 (297)
294 PRK15180 Vi polysaccharide bio 88.0 9.8 0.00021 38.6 12.2 104 422-527 333-438 (831)
295 PF10602 RPN7: 26S proteasome 87.3 11 0.00024 33.6 11.4 93 344-438 39-139 (177)
296 PF13170 DUF4003: Protein of u 86.9 33 0.00071 33.6 16.5 134 155-317 78-224 (297)
297 PF09613 HrpB1_HrpK: Bacterial 86.5 3.7 7.9E-05 35.4 7.4 51 456-506 22-72 (160)
298 KOG4648 Uncharacterized conser 86.4 1.4 3.1E-05 42.3 5.4 111 382-499 103-216 (536)
299 PF14853 Fis1_TPR_C: Fis1 C-te 85.6 4.4 9.5E-05 27.6 6.0 27 480-506 3-29 (53)
300 KOG1941 Acetylcholine receptor 85.6 39 0.00085 33.3 15.5 127 346-472 127-274 (518)
301 TIGR02561 HrpB1_HrpK type III 85.5 4 8.6E-05 34.6 7.0 54 456-509 22-75 (153)
302 COG4649 Uncharacterized protei 85.4 15 0.00032 32.2 10.3 30 244-273 171-200 (221)
303 KOG1586 Protein required for f 85.1 32 0.00069 31.8 13.4 62 417-478 118-188 (288)
304 cd00923 Cyt_c_Oxidase_Va Cytoc 85.0 6.6 0.00014 30.4 7.2 62 357-420 23-84 (103)
305 KOG4570 Uncharacterized conser 84.9 7.7 0.00017 37.2 9.3 97 305-405 59-164 (418)
306 PF00515 TPR_1: Tetratricopept 84.5 2.2 4.7E-05 25.6 3.9 27 343-369 3-29 (34)
307 PF10602 RPN7: 26S proteasome 84.5 17 0.00037 32.4 11.1 57 211-267 38-100 (177)
308 KOG0276 Vesicle coat complex C 84.5 7.2 0.00016 40.8 9.6 99 119-234 648-746 (794)
309 COG4785 NlpI Lipoprotein NlpI, 84.4 4.2 9.1E-05 36.7 7.0 90 386-478 75-167 (297)
310 PF07719 TPR_2: Tetratricopept 84.1 1.6 3.5E-05 26.1 3.2 28 479-506 2-29 (34)
311 PF07721 TPR_4: Tetratricopept 83.8 1.3 2.8E-05 24.9 2.4 24 479-502 2-25 (26)
312 PF13431 TPR_17: Tetratricopep 83.8 1.3 2.9E-05 26.8 2.7 24 74-97 10-33 (34)
313 PF13374 TPR_10: Tetratricopep 82.9 1.9 4.2E-05 27.2 3.5 28 479-506 3-30 (42)
314 KOG3364 Membrane protein invol 82.8 12 0.00027 31.1 8.5 64 443-506 31-99 (149)
315 PF02284 COX5A: Cytochrome c o 82.5 11 0.00024 29.6 7.7 60 359-420 28-87 (108)
316 KOG1258 mRNA processing protei 82.1 74 0.0016 33.8 26.2 141 5-149 44-192 (577)
317 KOG1586 Protein required for f 82.0 43 0.00093 31.0 14.3 87 390-476 128-227 (288)
318 COG1747 Uncharacterized N-term 82.0 69 0.0015 33.3 20.9 157 241-404 67-233 (711)
319 PF04097 Nic96: Nup93/Nic96; 81.4 90 0.002 34.3 24.2 68 9-78 114-188 (613)
320 PRK10941 hypothetical protein; 81.2 12 0.00025 36.0 9.3 62 446-507 183-244 (269)
321 COG3947 Response regulator con 80.8 54 0.0012 31.4 14.6 58 448-505 283-340 (361)
322 TIGR02508 type_III_yscG type I 80.7 25 0.00055 27.5 9.5 88 189-280 20-107 (115)
323 KOG4648 Uncharacterized conser 80.7 5.1 0.00011 38.8 6.5 86 348-444 104-198 (536)
324 PF06552 TOM20_plant: Plant sp 80.6 15 0.00031 32.5 8.7 45 460-504 51-99 (186)
325 smart00028 TPR Tetratricopepti 80.1 3.5 7.6E-05 23.5 3.8 29 447-475 4-32 (34)
326 KOG1585 Protein required for f 80.0 52 0.0011 30.7 16.9 24 243-266 94-117 (308)
327 PF14853 Fis1_TPR_C: Fis1 C-te 79.7 2.4 5.3E-05 28.9 3.0 32 449-480 6-37 (53)
328 PF00637 Clathrin: Region in C 79.6 1.1 2.4E-05 38.4 1.8 83 180-265 13-95 (143)
329 KOG4570 Uncharacterized conser 79.5 18 0.00039 34.8 9.5 51 154-204 115-165 (418)
330 PF13181 TPR_8: Tetratricopept 79.4 3.5 7.7E-05 24.6 3.6 28 479-506 2-29 (34)
331 PF13174 TPR_6: Tetratricopept 79.4 3 6.5E-05 24.6 3.2 25 451-475 7-31 (33)
332 PF11207 DUF2989: Protein of u 79.3 9.1 0.0002 34.5 7.3 75 423-498 118-198 (203)
333 TIGR02508 type_III_yscG type I 78.7 30 0.00065 27.2 9.6 61 318-381 47-107 (115)
334 KOG0276 Vesicle coat complex C 78.6 21 0.00046 37.6 10.4 99 221-336 649-747 (794)
335 KOG2396 HAT (Half-A-TPR) repea 78.6 88 0.0019 32.5 33.5 80 23-105 88-168 (568)
336 COG2976 Uncharacterized protei 78.4 51 0.0011 29.6 13.7 113 359-476 70-191 (207)
337 PF13174 TPR_6: Tetratricopept 77.8 2.5 5.5E-05 25.0 2.5 28 480-507 2-29 (33)
338 KOG0403 Neoplastic transformat 77.4 89 0.0019 31.9 21.2 58 314-371 513-573 (645)
339 PRK12798 chemotaxis protein; R 77.2 88 0.0019 31.8 19.6 179 323-504 125-321 (421)
340 PF04910 Tcf25: Transcriptiona 76.8 35 0.00077 34.5 11.7 96 411-506 39-167 (360)
341 PRK13800 putative oxidoreducta 76.8 1.5E+02 0.0034 34.4 23.7 246 39-303 632-880 (897)
342 KOG1308 Hsp70-interacting prot 76.3 1.8 4E-05 41.8 2.2 88 425-512 127-216 (377)
343 cd00923 Cyt_c_Oxidase_Va Cytoc 76.3 16 0.00035 28.3 6.8 58 157-216 25-83 (103)
344 PRK15180 Vi polysaccharide bio 76.2 15 0.00033 37.4 8.5 119 354-476 302-423 (831)
345 PF13374 TPR_10: Tetratricopep 75.6 6.6 0.00014 24.6 4.2 28 241-268 3-30 (42)
346 PF08631 SPO22: Meiosis protei 73.5 91 0.002 30.2 24.8 20 485-504 253-272 (278)
347 PF02284 COX5A: Cytochrome c o 73.4 19 0.0004 28.4 6.6 48 436-483 37-84 (108)
348 COG2976 Uncharacterized protei 73.4 70 0.0015 28.8 12.1 57 315-371 131-189 (207)
349 TIGR02561 HrpB1_HrpK type III 73.3 58 0.0013 27.8 11.8 97 55-166 23-120 (153)
350 PF07721 TPR_4: Tetratricopept 73.0 7.7 0.00017 21.7 3.5 21 416-436 5-25 (26)
351 PRK13342 recombination factor 72.8 1.2E+02 0.0027 31.4 15.4 116 155-288 153-278 (413)
352 PF11207 DUF2989: Protein of u 72.8 22 0.00048 32.1 7.9 68 59-127 123-197 (203)
353 KOG1550 Extracellular protein 72.5 1.4E+02 0.003 32.5 15.6 49 459-510 379-429 (552)
354 KOG2396 HAT (Half-A-TPR) repea 71.9 1.3E+02 0.0028 31.3 31.5 77 4-83 103-180 (568)
355 COG4649 Uncharacterized protei 71.6 71 0.0015 28.1 15.5 121 351-472 68-195 (221)
356 KOG3807 Predicted membrane pro 71.2 57 0.0012 31.7 10.6 49 350-400 284-335 (556)
357 PF09477 Type_III_YscG: Bacter 71.0 51 0.0011 26.3 8.9 87 188-278 20-106 (116)
358 TIGR03504 FimV_Cterm FimV C-te 70.5 7.3 0.00016 25.3 3.3 27 482-508 3-29 (44)
359 KOG2066 Vacuolar assembly/sort 70.3 1.8E+02 0.0039 32.2 27.8 167 52-240 366-536 (846)
360 COG4455 ImpE Protein of avirul 70.0 16 0.00036 33.2 6.4 64 415-478 4-69 (273)
361 KOG0376 Serine-threonine phosp 69.9 9.1 0.0002 39.1 5.5 85 422-506 14-100 (476)
362 KOG4234 TPR repeat-containing 69.7 59 0.0013 29.3 9.6 58 420-477 142-201 (271)
363 COG2909 MalT ATP-dependent tra 69.5 2E+02 0.0043 32.4 20.1 193 321-517 426-657 (894)
364 KOG1464 COP9 signalosome, subu 69.5 54 0.0012 30.9 9.8 177 324-500 41-253 (440)
365 PF10579 Rapsyn_N: Rapsyn N-te 69.4 17 0.00037 27.1 5.3 47 388-434 18-65 (80)
366 PF14561 TPR_20: Tetratricopep 69.2 9.8 0.00021 29.4 4.4 45 464-508 8-52 (90)
367 KOG1550 Extracellular protein 67.4 1.9E+02 0.0041 31.4 22.4 77 427-507 454-538 (552)
368 KOG0292 Vesicle coat complex C 66.2 13 0.00028 40.9 5.9 117 354-502 606-722 (1202)
369 PRK13800 putative oxidoreducta 64.9 2.8E+02 0.006 32.4 28.6 254 129-404 625-880 (897)
370 PF09670 Cas_Cas02710: CRISPR- 64.0 1.1E+02 0.0024 31.2 12.1 53 351-404 141-197 (379)
371 KOG4642 Chaperone-dependent E3 63.2 24 0.00051 32.7 6.2 65 440-504 39-104 (284)
372 COG1747 Uncharacterized N-term 63.1 2E+02 0.0043 30.2 22.5 14 577-590 429-442 (711)
373 PF09986 DUF2225: Uncharacteri 62.5 27 0.00059 32.2 6.8 66 444-509 118-196 (214)
374 PRK10941 hypothetical protein; 62.4 32 0.0007 33.0 7.4 67 415-481 184-252 (269)
375 COG4455 ImpE Protein of avirul 61.9 55 0.0012 29.9 8.1 77 8-86 3-81 (273)
376 KOG4077 Cytochrome c oxidase, 61.8 60 0.0013 26.7 7.5 71 359-440 67-137 (149)
377 PF11663 Toxin_YhaV: Toxin wit 60.2 12 0.00026 31.1 3.5 31 19-52 108-138 (140)
378 TIGR03504 FimV_Cterm FimV C-te 59.6 16 0.00034 23.8 3.3 22 13-34 6-27 (44)
379 KOG4507 Uncharacterized conser 59.4 25 0.00053 37.0 6.2 98 388-488 619-720 (886)
380 COG4976 Predicted methyltransf 59.1 14 0.0003 33.9 3.9 57 421-477 4-62 (287)
381 PF11838 ERAP1_C: ERAP1-like C 58.7 1.9E+02 0.0042 28.5 16.8 83 391-473 145-230 (324)
382 PF11768 DUF3312: Protein of u 58.3 1.1E+02 0.0024 32.3 10.7 24 314-337 412-435 (545)
383 KOG1498 26S proteasome regulat 58.3 2.1E+02 0.0046 28.9 17.8 194 306-529 48-263 (439)
384 PF09477 Type_III_YscG: Bacter 58.1 96 0.0021 24.8 9.1 78 291-371 22-99 (116)
385 PF11846 DUF3366: Domain of un 57.8 43 0.00094 30.3 7.3 30 409-438 141-170 (193)
386 PF10366 Vps39_1: Vacuolar sor 57.0 78 0.0017 25.5 7.7 28 342-369 40-67 (108)
387 COG3947 Response regulator con 56.8 1.9E+02 0.0042 27.9 13.8 57 414-470 281-339 (361)
388 PF07163 Pex26: Pex26 protein; 56.7 1E+02 0.0022 29.5 9.2 86 145-232 89-181 (309)
389 PF07163 Pex26: Pex26 protein; 56.4 1.3E+02 0.0028 28.8 9.9 88 348-438 90-184 (309)
390 PF10579 Rapsyn_N: Rapsyn N-te 56.3 32 0.0007 25.6 4.8 46 353-398 18-65 (80)
391 PRK11619 lytic murein transgly 55.7 3.3E+02 0.0071 30.2 39.8 402 92-512 81-510 (644)
392 PF07575 Nucleopor_Nup85: Nup8 55.3 3.1E+02 0.0067 29.9 17.7 158 341-520 372-535 (566)
393 PF10366 Vps39_1: Vacuolar sor 55.3 77 0.0017 25.5 7.4 28 140-167 40-67 (108)
394 PF04097 Nic96: Nup93/Nic96; 55.1 3.3E+02 0.0071 30.1 19.1 57 214-270 116-182 (613)
395 smart00386 HAT HAT (Half-A-TPR 54.9 19 0.00042 20.7 3.2 29 458-486 1-29 (33)
396 cd08819 CARD_MDA5_2 Caspase ac 54.7 35 0.00075 26.0 4.8 33 90-123 49-81 (88)
397 PF06552 TOM20_plant: Plant sp 54.6 91 0.002 27.7 8.1 28 359-388 53-81 (186)
398 PHA02875 ankyrin repeat protei 54.0 2.7E+02 0.0058 28.7 17.4 76 18-102 11-90 (413)
399 PF06957 COPI_C: Coatomer (COP 53.6 62 0.0013 33.2 8.0 45 433-477 287-333 (422)
400 KOG0545 Aryl-hydrocarbon recep 53.6 88 0.0019 29.2 8.1 54 454-507 240-293 (329)
401 PF13934 ELYS: Nuclear pore co 53.2 1.4E+02 0.0031 27.8 10.0 20 347-366 114-133 (226)
402 cd08819 CARD_MDA5_2 Caspase ac 52.6 83 0.0018 24.1 6.5 38 120-158 48-85 (88)
403 KOG2422 Uncharacterized conser 49.7 3.1E+02 0.0067 29.3 12.1 54 452-505 350-405 (665)
404 PF04910 Tcf25: Transcriptiona 49.5 3E+02 0.0064 27.9 18.3 88 383-475 110-224 (360)
405 KOG3364 Membrane protein invol 49.4 81 0.0018 26.5 6.6 35 446-480 73-107 (149)
406 KOG0890 Protein kinase of the 49.3 6.9E+02 0.015 32.1 29.1 156 82-246 1388-1552(2382)
407 PF14863 Alkyl_sulf_dimr: Alky 49.2 55 0.0012 27.9 5.9 64 428-494 57-120 (141)
408 KOG3824 Huntingtin interacting 48.4 29 0.00062 33.3 4.4 59 424-482 128-188 (472)
409 PF12862 Apc5: Anaphase-promot 48.1 45 0.00098 25.9 5.0 52 455-506 9-69 (94)
410 KOG4279 Serine/threonine prote 46.3 4.5E+02 0.0098 29.1 13.2 182 242-477 203-399 (1226)
411 PF07720 TPR_3: Tetratricopept 46.0 55 0.0012 20.2 4.0 19 448-466 5-23 (36)
412 PF13762 MNE1: Mitochondrial s 45.9 1.9E+02 0.0042 24.7 11.1 49 340-388 78-127 (145)
413 PF11848 DUF3368: Domain of un 45.6 88 0.0019 20.7 5.3 33 352-384 13-45 (48)
414 PF11663 Toxin_YhaV: Toxin wit 45.4 28 0.00061 29.0 3.4 33 150-184 106-138 (140)
415 PF10345 Cohesin_load: Cohesin 45.0 4.6E+02 0.01 28.9 30.0 177 23-201 38-252 (608)
416 PF07575 Nucleopor_Nup85: Nup8 43.6 4.7E+02 0.01 28.5 18.5 26 6-32 149-174 (566)
417 PF11846 DUF3366: Domain of un 43.5 75 0.0016 28.7 6.5 37 439-475 139-175 (193)
418 PF11848 DUF3368: Domain of un 43.2 83 0.0018 20.8 4.9 33 150-182 13-45 (48)
419 PF13934 ELYS: Nuclear pore co 42.8 2.9E+02 0.0062 25.8 12.9 107 343-458 78-186 (226)
420 PF13762 MNE1: Mitochondrial s 41.7 2.2E+02 0.0049 24.3 11.0 52 238-289 77-129 (145)
421 cd08326 CARD_CASP9 Caspase act 41.6 37 0.00081 25.8 3.4 29 91-119 44-72 (84)
422 PHA02875 ankyrin repeat protei 41.3 4.2E+02 0.009 27.3 17.3 233 53-302 10-265 (413)
423 PF08424 NRDE-2: NRDE-2, neces 40.8 3.8E+02 0.0081 26.6 14.9 62 23-87 48-109 (321)
424 KOG0551 Hsp90 co-chaperone CNS 40.6 1.4E+02 0.003 29.4 7.7 89 415-503 84-178 (390)
425 PF14689 SPOB_a: Sensor_kinase 40.6 38 0.00083 24.0 3.2 22 347-368 29-50 (62)
426 TIGR02270 conserved hypothetic 40.6 4.4E+02 0.0094 27.3 23.5 123 206-338 158-280 (410)
427 PRK10564 maltose regulon perip 40.3 52 0.0011 31.8 4.9 40 242-281 259-298 (303)
428 KOG3824 Huntingtin interacting 39.8 49 0.0011 31.8 4.5 51 454-504 126-176 (472)
429 PRK10564 maltose regulon perip 39.3 59 0.0013 31.5 5.0 41 343-383 259-299 (303)
430 PF11525 CopK: Copper resistan 39.0 12 0.00026 26.6 0.4 21 623-643 8-28 (73)
431 PRK11639 zinc uptake transcrip 38.1 1.2E+02 0.0025 26.9 6.6 52 137-188 23-74 (169)
432 PF14561 TPR_20: Tetratricopep 38.0 1.9E+02 0.0041 22.3 7.5 62 443-504 21-85 (90)
433 COG0735 Fur Fe2+/Zn2+ uptake r 37.9 1.3E+02 0.0029 25.7 6.7 46 140-185 21-66 (145)
434 KOG4507 Uncharacterized conser 37.9 1.1E+02 0.0025 32.4 7.1 133 373-508 568-706 (886)
435 cd00280 TRFH Telomeric Repeat 37.2 2.1E+02 0.0046 25.6 7.6 54 392-445 85-144 (200)
436 PF08311 Mad3_BUB1_I: Mad3/BUB 36.8 2.2E+02 0.0049 23.6 7.7 43 461-503 80-124 (126)
437 KOG0991 Replication factor C, 36.6 3.6E+02 0.0079 25.2 10.3 55 330-386 228-282 (333)
438 KOG4077 Cytochrome c oxidase, 35.9 1.9E+02 0.0041 24.0 6.6 45 158-202 68-112 (149)
439 PRK09169 hypothetical protein; 34.7 1.1E+03 0.024 30.3 41.8 463 42-504 122-692 (2316)
440 PF12968 DUF3856: Domain of Un 34.5 2E+02 0.0043 23.6 6.4 64 443-506 54-128 (144)
441 PF14689 SPOB_a: Sensor_kinase 34.4 61 0.0013 22.9 3.4 26 142-167 26-51 (62)
442 PF05944 Phage_term_smal: Phag 34.1 2.6E+02 0.0057 23.5 7.5 27 47-73 53-79 (132)
443 PRK13342 recombination factor 33.5 5.6E+02 0.012 26.5 15.8 47 343-389 229-278 (413)
444 TIGR02710 CRISPR-associated pr 33.0 5.4E+02 0.012 26.2 11.6 26 350-375 139-164 (380)
445 COG5191 Uncharacterized conser 32.9 1.1E+02 0.0024 29.7 5.7 76 409-484 104-182 (435)
446 KOG4642 Chaperone-dependent E3 32.2 4.4E+02 0.0095 24.9 9.8 79 322-402 22-104 (284)
447 PF15161 Neuropep_like: Neurop 32.1 15 0.00033 24.7 -0.0 18 602-620 11-28 (65)
448 COG5108 RPO41 Mitochondrial DN 31.4 2.5E+02 0.0055 30.4 8.4 60 140-202 66-131 (1117)
449 COG0735 Fur Fe2+/Zn2+ uptake r 31.2 2.7E+02 0.0058 23.8 7.5 62 365-428 10-71 (145)
450 PF13929 mRNA_stabil: mRNA sta 31.2 5E+02 0.011 25.2 18.1 69 400-468 190-262 (292)
451 cd08332 CARD_CASP2 Caspase act 31.1 82 0.0018 24.3 3.9 27 125-151 51-77 (90)
452 COG2178 Predicted RNA-binding 31.1 4E+02 0.0087 24.1 9.1 18 489-506 132-149 (204)
453 PF04190 DUF410: Protein of un 31.1 4.8E+02 0.01 25.0 19.0 83 308-405 88-170 (260)
454 PF08311 Mad3_BUB1_I: Mad3/BUB 30.9 3.1E+02 0.0067 22.7 8.5 43 394-437 81-124 (126)
455 KOG1308 Hsp70-interacting prot 30.8 54 0.0012 32.2 3.4 116 388-506 126-243 (377)
456 COG4003 Uncharacterized protei 30.6 1.1E+02 0.0023 22.9 4.0 34 48-82 37-70 (98)
457 KOG0292 Vesicle coat complex C 30.0 8.8E+02 0.019 27.7 12.4 130 319-472 652-781 (1202)
458 PF08967 DUF1884: Domain of un 29.6 57 0.0012 24.3 2.5 27 537-563 7-33 (85)
459 cd08326 CARD_CASP9 Caspase act 29.5 2E+02 0.0043 21.9 5.6 40 119-158 41-80 (84)
460 PRK11639 zinc uptake transcrip 29.4 2.3E+02 0.005 25.0 7.0 61 367-429 17-77 (169)
461 KOG1114 Tripeptidyl peptidase 29.1 9.4E+02 0.02 27.8 15.7 73 359-431 1214-1286(1304)
462 KOG4814 Uncharacterized conser 28.8 6.5E+02 0.014 27.5 10.8 84 424-507 366-457 (872)
463 PF11817 Foie-gras_1: Foie gra 28.5 2.1E+02 0.0047 27.0 7.2 18 147-164 18-35 (247)
464 PF09670 Cas_Cas02710: CRISPR- 28.3 6.6E+02 0.014 25.7 12.0 56 147-203 139-198 (379)
465 PF04034 DUF367: Domain of unk 27.8 3.6E+02 0.0077 22.4 7.5 58 412-469 66-124 (127)
466 COG4941 Predicted RNA polymera 27.1 6.4E+02 0.014 25.1 11.7 125 340-477 263-398 (415)
467 PRK13184 pknD serine/threonine 26.9 1.1E+03 0.023 27.7 20.6 124 380-505 692-831 (932)
468 COG5108 RPO41 Mitochondrial DN 26.8 4.8E+02 0.01 28.5 9.4 47 179-225 33-81 (1117)
469 COG4976 Predicted methyltransf 26.7 1.2E+02 0.0025 28.2 4.5 54 455-508 6-59 (287)
470 PF13929 mRNA_stabil: mRNA sta 26.5 6E+02 0.013 24.7 20.2 59 307-365 199-262 (292)
471 KOG2063 Vacuolar assembly/sort 26.4 1E+03 0.023 27.4 19.1 131 141-286 506-637 (877)
472 PF12862 Apc5: Anaphase-promot 26.1 3.1E+02 0.0067 21.2 8.2 20 385-404 50-69 (94)
473 PF11768 DUF3312: Protein of u 25.9 6E+02 0.013 27.2 10.0 56 213-268 412-472 (545)
474 PF12926 MOZART2: Mitotic-spin 25.7 3.1E+02 0.0067 21.0 7.3 41 296-336 29-69 (88)
475 COG2912 Uncharacterized conser 25.7 1.7E+02 0.0036 28.0 5.6 59 449-507 186-244 (269)
476 COG0790 FOG: TPR repeat, SEL1 25.6 6.1E+02 0.013 24.4 18.8 49 225-273 93-146 (292)
477 PRK12357 glutaminase; Reviewed 25.1 6.8E+02 0.015 24.8 10.7 61 378-439 196-263 (326)
478 cd00280 TRFH Telomeric Repeat 25.0 5.1E+02 0.011 23.3 10.8 28 450-478 117-144 (200)
479 smart00544 MA3 Domain in DAP-5 24.9 3.6E+02 0.0078 21.5 7.9 21 246-266 8-28 (113)
480 KOG0403 Neoplastic transformat 24.8 8E+02 0.017 25.5 21.5 55 380-438 513-569 (645)
481 cd07153 Fur_like Ferric uptake 24.6 1.6E+02 0.0034 23.8 4.9 46 144-189 5-50 (116)
482 COG1488 PncB Nicotinic acid ph 24.5 74 0.0016 32.7 3.3 83 544-630 278-365 (405)
483 PF04090 RNA_pol_I_TF: RNA pol 24.5 4.1E+02 0.0089 24.2 7.6 107 444-550 41-148 (199)
484 PF11838 ERAP1_C: ERAP1-like C 24.2 6.9E+02 0.015 24.5 18.0 30 375-404 200-229 (324)
485 PF11817 Foie-gras_1: Foie gra 23.8 2.5E+02 0.0054 26.6 6.7 23 12-34 16-38 (247)
486 KOG3507 DNA-directed RNA polym 23.8 29 0.00063 23.8 0.2 12 604-615 20-31 (62)
487 PF02847 MA3: MA3 domain; Int 23.6 1.7E+02 0.0037 23.4 4.8 21 216-236 9-29 (113)
488 PHA02537 M terminase endonucle 23.5 6.2E+02 0.013 23.7 10.0 24 352-375 94-118 (230)
489 PHA03100 ankyrin repeat protei 23.4 8.8E+02 0.019 25.5 15.4 52 49-104 39-97 (480)
490 PF04190 DUF410: Protein of un 23.3 6.6E+02 0.014 24.0 19.6 96 148-243 19-124 (260)
491 PF08225 Antimicrobial19: Pseu 23.1 30 0.00065 18.0 0.1 11 609-619 11-21 (23)
492 PF11123 DNA_Packaging_2: DNA 22.7 2.2E+02 0.0047 20.9 4.3 45 326-381 13-60 (82)
493 PF10255 Paf67: RNA polymerase 22.7 4.5E+02 0.0097 27.1 8.3 55 314-368 126-191 (404)
494 cd07153 Fur_like Ferric uptake 22.4 2E+02 0.0044 23.1 5.1 43 348-390 7-49 (116)
495 COG0790 FOG: TPR repeat, SEL1 22.3 7.1E+02 0.015 24.0 19.0 49 458-509 205-268 (292)
496 KOG4567 GTPase-activating prot 22.2 7.6E+02 0.016 24.3 9.9 45 260-304 263-307 (370)
497 KOG1524 WD40 repeat-containing 22.2 3.5E+02 0.0075 28.5 7.3 89 412-503 573-669 (737)
498 KOG0376 Serine-threonine phosp 22.0 1E+02 0.0022 31.8 3.7 104 348-456 11-117 (476)
499 PF02184 HAT: HAT (Half-A-TPR) 22.0 1.7E+02 0.0038 17.5 3.1 23 459-482 2-24 (32)
500 KOG3807 Predicted membrane pro 21.2 6.5E+02 0.014 24.8 8.5 57 310-366 275-336 (556)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.1e-128 Score=1085.26 Aligned_cols=641 Identities=41% Similarity=0.739 Sum_probs=625.1
Q ss_pred CCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhH
Q 006388 1 MPFHDGVSWNLLISGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVG 80 (647)
Q Consensus 1 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 80 (647)
||+||+++||+||.+|++.|++++|+++|++|...|+ .||..||+.++++|...+++..+.++|..+++.|+.||+.++
T Consensus 147 m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~-~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (857)
T PLN03077 147 MPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV-RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVV 225 (857)
T ss_pred CCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchH
Confidence 7899999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCCCCchHHHHHHHHHH-----------------------------------------
Q 006388 81 SPLVDMYAKLGLIYDAKRGFDELPEKNIVMYNTMITGLL----------------------------------------- 119 (647)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~----------------------------------------- 119 (647)
|+|+.+|+++|++++|.++|++|++||..+||+||.+|+
T Consensus 226 n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~ 305 (857)
T PLN03077 226 NALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDER 305 (857)
T ss_pred hHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH
Confidence 999999999999999999999999888777777777665
Q ss_pred -----------------------------hcCChHHHHHHhhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 006388 120 -----------------------------RRGLVEESRRLFRGMKDKDSISWTTMITGLMQNGLEREAIDLFREMRLEGL 170 (647)
Q Consensus 120 -----------------------------~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 170 (647)
+.|++++|.++|++|.+||+++||+||.+|.+.|++++|+++|++|.+.|+
T Consensus 306 ~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~ 385 (857)
T PLN03077 306 LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNV 385 (857)
T ss_pred HHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 567777788888888889999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHH
Q 006388 171 AMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMAWKNVVSWTAMLVGY 250 (647)
Q Consensus 171 ~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 250 (647)
.||..||+.++.+|++.|+++.|.++|+.+.+.|+.++..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|
T Consensus 386 ~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~ 465 (857)
T PLN03077 386 SPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGL 465 (857)
T ss_pred CCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHH
Q 006388 251 GQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSH 330 (647)
Q Consensus 251 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 330 (647)
+++|+.++|+.+|++|.. +++||..||+.+|.+|++.|+++.+.++|..+.+.|+.++..++|+|+++|+++|++++|.
T Consensus 466 ~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~ 544 (857)
T PLN03077 466 RLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAW 544 (857)
T ss_pred HHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHH
Confidence 999999999999999986 5999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCc
Q 006388 331 RLFNEMNVRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRP 410 (647)
Q Consensus 331 ~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 410 (647)
++|+.+ .+|+.+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|.+.+|+.|
T Consensus 545 ~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P 623 (857)
T PLN03077 545 NQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP 623 (857)
T ss_pred HHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC
Confidence 999999 8999999999999999999999999999999999999999999999999999999999999999997889999
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhh
Q 006388 411 IHDHYTCMIDILSRAGRLEEAKSFINKMPFPPDAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYAS 490 (647)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 490 (647)
+..+|++|+++|+++|++++|.+++++|+++||..+|++|+.+|+.+|+.+.|+.+.+++++++|+++..|+.|+++|+.
T Consensus 624 ~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~ 703 (857)
T PLN03077 624 NLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYAD 703 (857)
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHhCCCccCCCcceEeEcCeEEEEEecCCCCcchHHHHHHHHHHHHhhHhcCcccCCcccccccchh
Q 006388 491 KGKWDHVSQLRRTMREKGVRKDPGCSWIKYKSRVHIFSADDWSSPYSDQIYAELEKLNRKMIKEGYVPDMSSVLHDVELS 570 (647)
Q Consensus 491 ~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~ 570 (647)
.|+|++|.++++.|+++|++|+||+|||++++++|.|.+||.+||+.++|+..|+++..+|++.||.||+...+ +++++
T Consensus 704 ~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~ 782 (857)
T PLN03077 704 AGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEV 782 (857)
T ss_pred CCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877 55788
Q ss_pred hhhhhcccccHHHHHHHhhccCCCCCcEEEEeccccCCCccchhhhhhhhccceEEEecCCccccccCcccCCCC
Q 006388 571 EKIKMLNHHSEKLAIAFGLLFIPPGLPIRVVKNLRVCSDCHNATKYISKITQREILVRDAVRFHLFKNGECSCGD 645 (647)
Q Consensus 571 ~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~csc~~ 645 (647)
+|+..+++||||||+||||+++|+|.||||+||||||+|||+++|+||++++|+|||||.+|||||+||+|||+|
T Consensus 783 ~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 783 SKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.8e-125 Score=1036.69 Aligned_cols=612 Identities=37% Similarity=0.677 Sum_probs=601.9
Q ss_pred CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCC-CCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHH
Q 006388 4 HDGVSWNLLISGHASHGSVNDAVKVYNLMLKDG-LGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSP 82 (647)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 82 (647)
++.++|+++|.+|.+.|++++|+++|+.|...+ + .||..+|+.++.+|.+.++++.+.++|..|.+.|+.||+.++|.
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~-~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPF-TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 466799999999999999999999999999865 5 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHhccCCCCCchHHHHHHHHHHhcCChHHHHHHhhcCCCCCeehHHHHHHHHHhCCChhHHHHHH
Q 006388 83 LVDMYAKLGLIYDAKRGFDELPEKNIVMYNTMITGLLRRGLVEESRRLFRGMKDKDSISWTTMITGLMQNGLEREAIDLF 162 (647)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 162 (647)
|+.+|+++|++++|.++|++|+ +||.++||+||.+|++.|++++|+++|
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~-------------------------------~~~~~t~n~li~~~~~~g~~~~A~~lf 212 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMP-------------------------------ERNLASWGTIIGGLVDAGNYREAFALF 212 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCC-------------------------------CCCeeeHHHHHHHHHHCcCHHHHHHHH
Confidence 9999999999999999999888 678899999999999999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhH
Q 006388 163 REMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMAWKNVVS 242 (647)
Q Consensus 163 ~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~ 242 (647)
++|.+.|+.||..||+.++.+|+..|..+.+.+++..+.+.|+.+|..++|+|+++|+++|++++|.++|++|+++|+++
T Consensus 213 ~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt 292 (697)
T PLN03081 213 REMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVA 292 (697)
T ss_pred HHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHh
Q 006388 243 WTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGK 322 (647)
Q Consensus 243 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 322 (647)
||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|..|.+.|+.+|..++++|+++|++
T Consensus 293 ~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k 372 (697)
T PLN03081 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 006388 323 CGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIM 402 (647)
Q Consensus 323 ~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 402 (647)
+|++++|.++|++|.++|+.+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|
T Consensus 373 ~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m 452 (697)
T PLN03081 373 WGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM 452 (697)
T ss_pred CCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHH
Q 006388 403 VKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKMPFPPDAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYV 482 (647)
Q Consensus 403 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 482 (647)
.+++|+.|+..+|++|+++|++.|++++|.+++++|++.|+..+|++|+.+|+.+|+++.|+.+++++.+++|++..+|.
T Consensus 453 ~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~ 532 (697)
T PLN03081 453 SENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYV 532 (697)
T ss_pred HHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchH
Confidence 98889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhCCChhHHHHHHHHHHhCCCccCCCcceEeEcCeEEEEEecCCCCcchHHHHHHHHHHHHhhHhcCcccCCcc
Q 006388 483 LLSSIYASKGKWDHVSQLRRTMREKGVRKDPGCSWIKYKSRVHIFSADDWSSPYSDQIYAELEKLNRKMIKEGYVPDMSS 562 (647)
Q Consensus 483 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~ 562 (647)
.|+++|++.|+|++|.++++.|+++|+++.||+||+++++.+|.|.+||.+||+..+|+..+.++..+|++.||.||+..
T Consensus 533 ~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~ 612 (697)
T PLN03081 533 VLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENE 612 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhhhhcccccHHHHHHHhhccCCCCCcEEEEeccccCCCccchhhhhhhhccceEEEecCCccccccCcccC
Q 006388 563 VLHDVELSEKIKMLNHHSEKLAIAFGLLFIPPGLPIRVVKNLRVCSDCHNATKYISKITQREILVRDAVRFHLFKNGECS 642 (647)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~cs 642 (647)
+++++++++++..+.+|||+||+||||+++|+|.||||+||||||+|||+|+|+||++++|+|||||.+|||||+||+||
T Consensus 613 ~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~cs 692 (697)
T PLN03081 613 LLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCS 692 (697)
T ss_pred hhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 006388 643 CGDFW 647 (647)
Q Consensus 643 c~~~~ 647 (647)
|+|||
T Consensus 693 c~d~w 697 (697)
T PLN03081 693 CGDYW 697 (697)
T ss_pred ccccC
Confidence 99999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.8e-77 Score=674.47 Aligned_cols=615 Identities=24% Similarity=0.358 Sum_probs=543.9
Q ss_pred CCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHH
Q 006388 2 PFHDGVSWNLLISGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGS 81 (647)
Q Consensus 2 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 81 (647)
+.+|+..+|+||++|++.|+.+.|+++|++|. +||..+|++++.+|.+.|++++|.++|+.|.+.|+.||.++|+
T Consensus 117 ~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~-----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~ 191 (857)
T PLN03077 117 PSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFP 191 (857)
T ss_pred CCCCchHHHHHHHHHHhCCChHHHHHHHhcCC-----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHH
Confidence 46788899999999999999999999999997 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHhccCC----CCCchHHHHHHHHHHhcCChHHHHHHhhcCCCCCeehHHHHHHHHHhCCChhH
Q 006388 82 PLVDMYAKLGLIYDAKRGFDELP----EKNIVMYNTMITGLLRRGLVEESRRLFRGMKDKDSISWTTMITGLMQNGLERE 157 (647)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 157 (647)
.++..+++.+++..+.+++..|. .+|+.+||+||.+|+++|++++|.++|++|+++|+++||+||.+|++.|++++
T Consensus 192 ~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~e 271 (857)
T PLN03077 192 CVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLE 271 (857)
T ss_pred HHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHH
Confidence 99999999999999999998876 48999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 006388 158 AIDLFREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMAW 237 (647)
Q Consensus 158 A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 237 (647)
|+++|.+|...|+.||..||+.++.+|++.|+++.|.+++..+.+.|+.||..+||+|+++|+++|++++|.++|++|..
T Consensus 272 Al~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 351 (857)
T PLN03077 272 GLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET 351 (857)
T ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHH
Q 006388 238 KNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALV 317 (647)
Q Consensus 238 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 317 (647)
+|+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|+.+.+.|+.++..++|+|+
T Consensus 352 ~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li 431 (857)
T PLN03077 352 KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALI 431 (857)
T ss_pred CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHH
Q 006388 318 TFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRH 397 (647)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 397 (647)
++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+.+|++|.. ++.||..||+.+|.+|++.|.++.+.+
T Consensus 432 ~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~ 510 (857)
T PLN03077 432 EMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKE 510 (857)
T ss_pred HHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHH
Confidence 9999999999999999999999999999999999999999999999999986 599999999999999999999999999
Q ss_pred HHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhccC-CC
Q 006388 398 YFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKMPFPPDAIGWATLLSSCRIHGNVEIGKWAAESLLELD-PY 476 (647)
Q Consensus 398 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-p~ 476 (647)
++..+.+. |+.++..++++|+++|+++|++++|.++|+++ .||..+|++++.+|.++|+.++|.++|++|.+.+ .+
T Consensus 511 i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P 587 (857)
T PLN03077 511 IHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP 587 (857)
T ss_pred HHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 99999876 99999999999999999999999999999999 7999999999999999999999999999998754 33
Q ss_pred CchhHHHHHHhhhhCCChhHHHHHHHHHH-hCCCccCCCcceEeEcCeEEEEEecCCCCcchHHHHHHHHHHHHhhHhcC
Q 006388 477 NPASYVLLSSIYASKGKWDHVSQLRRTMR-EKGVRKDPGCSWIKYKSRVHIFSADDWSSPYSDQIYAELEKLNRKMIKEG 555 (647)
Q Consensus 477 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g 555 (647)
|..+|..++.+|++.|++++|.++|+.|. +.|+.|+... +...+..+.- ...+++..+.+++++
T Consensus 588 d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~----y~~lv~~l~r-----------~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 588 DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH----YACVVDLLGR-----------AGKLTEAYNFINKMP 652 (857)
T ss_pred CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHH----HHHHHHHHHh-----------CCCHHHHHHHHHHCC
Confidence 78999999999999999999999999999 7899876531 1111111100 113445555566668
Q ss_pred cccCCcccccccchhhhhhhcccccHHHH-HHHhhccCCCCCcEEEEeccccCCCccchhhhhhhhccce--------EE
Q 006388 556 YVPDMSSVLHDVELSEKIKMLNHHSEKLA-IAFGLLFIPPGLPIRVVKNLRVCSDCHNATKYISKITQRE--------IL 626 (647)
Q Consensus 556 ~~pd~~~~~~~~~~~~~~~~~~~~~e~la-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~--------~~ 626 (647)
+.||...|...+..+...+.+. -.|..+ ..+.+.+..++..+-+..-....|+-.++.+....|..+. .|
T Consensus 653 ~~pd~~~~~aLl~ac~~~~~~e-~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~i 731 (857)
T PLN03077 653 ITPDPAVWGALLNACRIHRHVE-LGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWV 731 (857)
T ss_pred CCCCHHHHHHHHHHHHHcCChH-HHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEE
Confidence 9999999876666553322221 112222 2234444434333322233456788888888887666552 22
Q ss_pred EecCCccccccCcccC
Q 006388 627 VRDAVRFHLFKNGECS 642 (647)
Q Consensus 627 ~~~~~~~h~~~~g~cs 642 (647)
.- .+..|-|..|.-|
T Consensus 732 e~-~~~~~~f~~~d~~ 746 (857)
T PLN03077 732 EV-KGKVHAFLTDDES 746 (857)
T ss_pred EE-CCEEEEEecCCCC
Confidence 22 2567788666544
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2e-67 Score=580.97 Aligned_cols=505 Identities=16% Similarity=0.212 Sum_probs=470.9
Q ss_pred CCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHH
Q 006388 3 FHDGVSWNLLISGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSP 82 (647)
Q Consensus 3 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 82 (647)
.+|...|..++..+++.|++++|+++|++|.+.|+.+++..+++.++.+|.+.|.+++|..++..|.. ||..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 46677899999999999999999999999999997578888999999999999999999999998864 89999999
Q ss_pred HHHHHHhcCChHHHHHHhccCCC----CCchHHHHHHHHHHhcCChHHHHHHhhcCC----CCCeehHHHHHHHHHhCCC
Q 006388 83 LVDMYAKLGLIYDAKRGFDELPE----KNIVMYNTMITGLLRRGLVEESRRLFRGMK----DKDSISWTTMITGLMQNGL 154 (647)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~ 154 (647)
|+.+|++.|+++.|.++|+.|.+ ||..+|++||.+|++.|++++|.++|++|. .||..+|+.||.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999974 899999999999999999999999999998 4799999999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH--cCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 006388 155 EREAIDLFREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIR--NDHKDNVFVGSALVDMYCKCKSIKYAESVF 232 (647)
Q Consensus 155 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 232 (647)
+++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.+++++|.+ .|+.||..+|++|+.+|+++|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987 678999999999999999999999999999
Q ss_pred hcCCC----CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCc
Q 006388 233 RTMAW----KNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLIS 308 (647)
Q Consensus 233 ~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~ 308 (647)
+.|.+ ++..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99975 46699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcC----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006388 309 FITVSNALVTFYGKCGNIEDSHRLFNEMN----VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLS 384 (647)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 384 (647)
+..+|++|+.+|+++|++++|.++|++|. .||+.+||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999995 78999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHH----HcC-------------------CHHHHHHHHHhC---
Q 006388 385 ACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILS----RAG-------------------RLEEAKSFINKM--- 438 (647)
Q Consensus 385 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~~A~~~~~~~--- 438 (647)
+|++.|++++|.++|+.|.+. |+.||..+|++|+.++. +++ ..++|..+|++|
T Consensus 763 a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 999999999999999999876 99999999999997743 222 346799999999
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhc-cCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhCCCccCCC
Q 006388 439 PFPPDAIGWATLLSSCRIHGNVEIGKWAAESLLE-LDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREKGVRKDPG 514 (647)
Q Consensus 439 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 514 (647)
++.||..+|+.++.++...+..+.+..+++.+.. -.+++..+|..|++.+.+. .++|..++++|.+.|+.|+..
T Consensus 842 Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 842 GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 7899999999999877788888888888876543 3456789999999988432 368999999999999988764
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.5e-63 Score=547.32 Aligned_cols=508 Identities=13% Similarity=0.158 Sum_probs=467.1
Q ss_pred CCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCC-CCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCchHHHHHHHH
Q 006388 39 NLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGF-GSYVFVGSPLVDMYAKLGLIYDAKRGFDELPEKNIVMYNTMITG 117 (647)
Q Consensus 39 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 117 (647)
.++...|..++..+.+.|++++|.++++.|.+.|+ +++..+++.++..|.+.|.+++|.++|+.|..||..+|+.+|.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a 446 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV 446 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 56778899999999999999999999999999986 57888889999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHhhcCCC----CCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHH
Q 006388 118 LLRRGLVEESRRLFRGMKD----KDSISWTTMITGLMQNGLEREAIDLFREMRLEGLAMDQFTFGSVLTACGGLLALEEG 193 (647)
Q Consensus 118 ~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a 193 (647)
|++.|+++.|.++|+.|.+ ||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 9999999999999999975 699999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC------CCChhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006388 194 KQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMA------WKNVVSWTAMLVGYGQNGCSEEAVKIFCNMQ 267 (647)
Q Consensus 194 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 267 (647)
.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .||.++|++||.+|++.|++++|.++|++|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999995 4789999999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC----CCChhh
Q 006388 268 RNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMN----VRDEVS 343 (647)
Q Consensus 268 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~d~~~ 343 (647)
+.|+.|+..+|+.++.+|++.|++++|..+|..|.+.|+.||..+|++++++|++.|++++|.++|+.|. .+|..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997 569999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHH
Q 006388 344 WTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILS 423 (647)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 423 (647)
|++||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+. |+.||..+|+.++.+|+
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYSILLVASE 765 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999865 99999999999999999
Q ss_pred HcCCHHHHHHHHHhC---CCCCChhhHHHHHHHHHh-----------------------cCChhHHHHHHHHHhccC-CC
Q 006388 424 RAGRLEEAKSFINKM---PFPPDAIGWATLLSSCRI-----------------------HGNVEIGKWAAESLLELD-PY 476 (647)
Q Consensus 424 ~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~-----------------------~~~~~~a~~~~~~~~~~~-p~ 476 (647)
+.|++++|.+++.+| ++.||..+|++|+..|.+ .+..+.|..+|++|.+.+ .+
T Consensus 766 k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~P 845 (1060)
T PLN03218 766 RKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLP 845 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCC
Confidence 999999999999999 689999999999977643 123467889999998865 34
Q ss_pred CchhHHHHHHhhhhCCChhHHHHHHHHHHhCCCccCCCcceEeEcCeEEEEEecCCCCcchHHHHHHHHHHHHhhHhcCc
Q 006388 477 NPASYVLLSSIYASKGKWDHVSQLRRTMREKGVRKDPGCSWIKYKSRVHIFSADDWSSPYSDQIYAELEKLNRKMIKEGY 556 (647)
Q Consensus 477 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~ 556 (647)
|..+|..++..+...+.++.+..+++.|...+..++.. .++..++.+ + .+ ..++..++++|.+.|+
T Consensus 846 d~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~----~y~~Li~g~--~--~~------~~~A~~l~~em~~~Gi 911 (1060)
T PLN03218 846 TMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQS----NLSTLVDGF--G--EY------DPRAFSLLEEAASLGV 911 (1060)
T ss_pred CHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchh----hhHHHHHhh--c--cC------hHHHHHHHHHHHHcCC
Confidence 78899999988889999999988888887766654432 233333322 1 11 1357789999999999
Q ss_pred ccCCc
Q 006388 557 VPDMS 561 (647)
Q Consensus 557 ~pd~~ 561 (647)
.|+..
T Consensus 912 ~p~~~ 916 (1060)
T PLN03218 912 VPSVS 916 (1060)
T ss_pred CCCcc
Confidence 99986
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.5e-59 Score=512.31 Aligned_cols=489 Identities=21% Similarity=0.334 Sum_probs=425.5
Q ss_pred CCeehHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 006388 137 KDSISWTTMITGLMQNGLEREAIDLFREMRLEG-LAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSAL 215 (647)
Q Consensus 137 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 215 (647)
++..+|+.+|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.+.+++..+.+.|+.||..++|.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 477899999999999999999999999998865 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHH
Q 006388 216 VDMYCKCKSIKYAESVFRTMAWKNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGT 295 (647)
Q Consensus 216 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 295 (647)
+++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 006388 296 QFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPD 375 (647)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 375 (647)
+++..+.+.|+.+|..++|+|+++|+++|++++|.++|++|..+|+++||+||.+|++.|+.++|+++|++|.+.|+.||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 006388 376 EVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKMPFPPDAIGWATLLSSCR 455 (647)
Q Consensus 376 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~ 455 (647)
..||+.++.+|++.|.+++|.++++.|.+. |+.|+..+|++|+++|+++|++++|.++|++|. +||..+|++|+.+|.
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGYG 402 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHHH
Confidence 999999999999999999999999999876 999999999999999999999999999999997 589999999999999
Q ss_pred hcCChhHHHHHHHHHhccC-CCCchhHHHHHHhhhhCCChhHHHHHHHHHHh-CCCccCCCcceEeEcCeEEEEEecCCC
Q 006388 456 IHGNVEIGKWAAESLLELD-PYNPASYVLLSSIYASKGKWDHVSQLRRTMRE-KGVRKDPGCSWIKYKSRVHIFSADDWS 533 (647)
Q Consensus 456 ~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~~~~~~s~~~~~~~~~~f~~~~~~ 533 (647)
++|+.++|.+++++|.+.+ .+|..+|..++.+|++.|++++|.++|+.|.+ .|+.|+... +...+..+. .
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~----y~~li~~l~----r 474 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMH----YACMIELLG----R 474 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccc----hHhHHHHHH----h
Confidence 9999999999999998754 33889999999999999999999999999975 688876531 222221111 1
Q ss_pred CcchHHHHHHHHHHHHhhHhcCcccCCcccccccchhhhhhhcccccHHHHHHHhhccCCCCCcEEEEeccccCCCccch
Q 006388 534 SPYSDQIYAELEKLNRKMIKEGYVPDMSSVLHDVELSEKIKMLNHHSEKLAIAFGLLFIPPGLPIRVVKNLRVCSDCHNA 613 (647)
Q Consensus 534 ~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (647)
. ..+++..+.++++++.||..+|...+..+.+.+.+..--+-....+++.+...+..+.+++-...+|+-.+|
T Consensus 475 ~-------G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 475 E-------GLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred c-------CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHH
Confidence 1 134555566677899999999876666655444332111111122344433333334455667889999999
Q ss_pred hhhhhhhccceEEEe-------cCCccccccCcccC
Q 006388 614 TKYISKITQREILVR-------DAVRFHLFKNGECS 642 (647)
Q Consensus 614 ~~~~s~~~~~~~~~~-------~~~~~h~~~~g~cs 642 (647)
.++..+|..+.+-.. -.+..|.|-.|..+
T Consensus 548 ~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~ 583 (697)
T PLN03081 548 AKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRL 583 (697)
T ss_pred HHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCC
Confidence 999998888865322 23456777655443
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.3e-30 Score=300.46 Aligned_cols=493 Identities=14% Similarity=0.057 Sum_probs=375.3
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHHHH
Q 006388 5 DGVSWNLLISGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSPLV 84 (647)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 84 (647)
+...|+.+...+.+.|++++|.++|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +........++
T Consensus 362 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 438 (899)
T TIGR02917 362 DPAALSLLGEAYLALGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLI 438 (899)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHH
Confidence 34456666666666666666666666666554 4445555566666666666666666666666554 22334445566
Q ss_pred HHHHhcCChHHHHHHhccCCC---CCchHHHHHHHHHHhcCChHHHHHHhhcCCC---CCeehHHHHHHHHHhCCChhHH
Q 006388 85 DMYAKLGLIYDAKRGFDELPE---KNIVMYNTMITGLLRRGLVEESRRLFRGMKD---KDSISWTTMITGLMQNGLEREA 158 (647)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 158 (647)
..|.+.|++++|..+++.+.. ++..+|..+...+...|++++|.+.|+++.+ .+...+..+...+...|++++|
T Consensus 439 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 518 (899)
T TIGR02917 439 LSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDA 518 (899)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 667777777777777766653 3456777777788888888888888876643 2445666777777788888888
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-
Q 006388 159 IDLFREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMAW- 237 (647)
Q Consensus 159 ~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~- 237 (647)
.+.|+++...+. .+..++..+...+...|+.++|...+..+.+.+ +.+...+..++..|.+.|++++|..+++.+..
T Consensus 519 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 596 (899)
T TIGR02917 519 IQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA 596 (899)
T ss_pred HHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 888888776532 255567777777777888888888888877664 44556677788888888888888888887753
Q ss_pred --CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHH
Q 006388 238 --KNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNA 315 (647)
Q Consensus 238 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 315 (647)
.+...|..+...|...|++++|+..|+++.+.. +.+...+..+..++...|++++|..++..+.+.. +.+...+..
T Consensus 597 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 674 (899)
T TIGR02917 597 APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIG 674 (899)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 356788888888888888888888888887653 3345667777788888888888888888887764 445777888
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcH
Q 006388 316 LVTFYGKCGNIEDSHRLFNEMNV---RDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLV 392 (647)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~~~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 392 (647)
++..+...|++++|.++++.+.. .+...|..+...+...|++++|+..|+++... .|+..++..+..++.+.|++
T Consensus 675 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 675 LAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCH
Confidence 88888888999988888888762 35667888888889999999999999998885 45557777888889999999
Q ss_pred HHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 006388 393 EKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-P-FPPDAIGWATLLSSCRIHGNVEIGKWAAESL 470 (647)
Q Consensus 393 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 470 (647)
++|.+.++.+.+. .+.+...+..+...|.+.|++++|.+.|+++ . .++++.+++.+...+...|+ ++|+..++++
T Consensus 753 ~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~ 829 (899)
T TIGR02917 753 AEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKA 829 (899)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHH
Confidence 9999999988763 4557788899999999999999999999987 2 33468889999999999999 8899999999
Q ss_pred hccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhCCC
Q 006388 471 LELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREKGV 509 (647)
Q Consensus 471 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 509 (647)
++..|+++..+..++.+|...|++++|.++++++.+.+.
T Consensus 830 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 830 LKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999999988654
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.6e-30 Score=299.69 Aligned_cols=491 Identities=10% Similarity=-0.004 Sum_probs=431.4
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHHHH
Q 006388 5 DGVSWNLLISGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSPLV 84 (647)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 84 (647)
+...|..+...+...|++++|.+.|+.+.+.. +.+......++..+.+.|++++|..+++.+.+.. +.++.+++.+.
T Consensus 396 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 472 (899)
T TIGR02917 396 NAAARTQLGISKLSQGDPSEAIADLETAAQLD--PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLG 472 (899)
T ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC--CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHH
Confidence 45678888999999999999999999999876 4556677778888999999999999999998764 56788899999
Q ss_pred HHHHhcCChHHHHHHhccCCC---CCchHHHHHHHHHHhcCChHHHHHHhhcCCC---CCeehHHHHHHHHHhCCChhHH
Q 006388 85 DMYAKLGLIYDAKRGFDELPE---KNIVMYNTMITGLLRRGLVEESRRLFRGMKD---KDSISWTTMITGLMQNGLEREA 158 (647)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 158 (647)
..|...|++++|.+.|+++.+ .+...+..+...+...|++++|.+.|+.+.+ .+..++..+...+.+.|++++|
T Consensus 473 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 552 (899)
T TIGR02917 473 AIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEA 552 (899)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998763 3556788899999999999999999998864 3667889999999999999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-
Q 006388 159 IDLFREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMAW- 237 (647)
Q Consensus 159 ~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~- 237 (647)
...|.++...+ +.+...+..+...+...|++++|.++++.+.+.. +.+..++..+...|.+.|++++|...|+.+.+
T Consensus 553 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 630 (899)
T TIGR02917 553 VAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL 630 (899)
T ss_pred HHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999998764 2355677888999999999999999999998764 56778899999999999999999999998753
Q ss_pred --CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHH
Q 006388 238 --KNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNA 315 (647)
Q Consensus 238 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 315 (647)
.+...|..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|..++..+.+.. +.+...+..
T Consensus 631 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 708 (899)
T TIGR02917 631 QPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFEL 708 (899)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHH
Confidence 367789999999999999999999999998753 3457788899999999999999999999998876 567778888
Q ss_pred HHHHHHhcCCHHHHHHHHhhcC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHH
Q 006388 316 LVTFYGKCGNIEDSHRLFNEMN--VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVE 393 (647)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~~~--~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 393 (647)
+...|.+.|++++|.+.|+.+. .|+..++..++..+.+.|++++|.+.++++.+.. +.+...+..+...|...|+.+
T Consensus 709 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~ 787 (899)
T TIGR02917 709 EGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYD 787 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 9999999999999999999886 4555778889999999999999999999999863 445668888889999999999
Q ss_pred HHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHh
Q 006388 394 KGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLL 471 (647)
Q Consensus 394 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 471 (647)
+|.++|+.+.+. .+++...+..+..++...|+ ++|+++++++ ...| +..++..+...+...|++++|...+++++
T Consensus 788 ~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 864 (899)
T TIGR02917 788 KAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAV 864 (899)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999864 35678899999999999999 8899999987 4444 46788899999999999999999999999
Q ss_pred ccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 472 ELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 472 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
+.+|.++.++..++.+|.+.|++++|.+++++|.+
T Consensus 865 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 865 NIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999863
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.97 E-value=1e-32 Score=223.46 Aligned_cols=106 Identities=63% Similarity=0.962 Sum_probs=97.3
Q ss_pred CcceEeEcCeEEEEEecCCCCcchHHHHHHHHHHHHhhHhcCcccCCcccccccchhhh--------hhhcccccHHHHH
Q 006388 514 GCSWIKYKSRVHIFSADDWSSPYSDQIYAELEKLNRKMIKEGYVPDMSSVLHDVELSEK--------IKMLNHHSEKLAI 585 (647)
Q Consensus 514 ~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~--------~~~~~~~~e~la~ 585 (647)
||||+++ |.|++||.+||+. ++..++...||.|++....++++++++ ...+..||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6899987 9999999999997 566777888999999999988877665 4578999999999
Q ss_pred HHhhccCCCCCcEEEEecc-ccCCCccchhhhhhhhccceEEEecCCcccccc
Q 006388 586 AFGLLFIPPGLPIRVVKNL-RVCSDCHNATKYISKITQREILVRDAVRFHLFK 637 (647)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~ 637 (647)
||||+++ ||+||+ |||+|||+|+|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999988 899999 999999999999999999999999999999996
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=4.9e-22 Score=230.13 Aligned_cols=489 Identities=10% Similarity=0.005 Sum_probs=261.2
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcchH----------------HHHHHHHhCCCChHHHHHHHHHH
Q 006388 5 DGVSWNLLISGHASHGSVNDAVKVYNLMLKDGLGNLSRITF----------------STMLIMSSSRRCVDLGRQIHGHI 68 (647)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~----------------~~ll~~~~~~~~~~~a~~~~~~~ 68 (647)
|+..+..++..+.+.|+.++|.+.+++..+.. |.+.... ..+...+...|++++|.+.++.+
T Consensus 61 ~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~ 138 (1157)
T PRK11447 61 NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKL 138 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 34455556666666666666666666666654 3332221 11223455566666666666666
Q ss_pred HHhCCCCchhhH-HHHHHHHHhcCChHHHHHHhccCCC--C-CchHHHHHHHHHHhcCChHHHHHHhhcCCCCCe-----
Q 006388 69 LKFGFGSYVFVG-SPLVDMYAKLGLIYDAKRGFDELPE--K-NIVMYNTMITGLLRRGLVEESRRLFRGMKDKDS----- 139 (647)
Q Consensus 69 ~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----- 139 (647)
.+.. +++.... ..+.......|+.++|++.|+++.+ | +...+..+...+...|+.++|+..|+++.+...
T Consensus 139 l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~a 217 (1157)
T PRK11447 139 FNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAA 217 (1157)
T ss_pred ccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHH
Confidence 5543 2222111 1111112233666666666666653 2 333455566666666666666666655432100
Q ss_pred -eh-----------------HH----------------------------------HHHHHHHhCCChhHHHHHHHHHHH
Q 006388 140 -IS-----------------WT----------------------------------TMITGLMQNGLEREAIDLFREMRL 167 (647)
Q Consensus 140 -~~-----------------~~----------------------------------~li~~~~~~g~~~~A~~~~~~m~~ 167 (647)
.. +. .+...+...|++++|+..|++..+
T Consensus 218 a~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~ 297 (1157)
T PRK11447 218 AQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVR 297 (1157)
T ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 00 00 011233445666666666666555
Q ss_pred CCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc-hhHH------------HHHHHHHHhcCCHHHHHHHHhc
Q 006388 168 EGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDN-VFVG------------SALVDMYCKCKSIKYAESVFRT 234 (647)
Q Consensus 168 ~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~------------~~li~~y~~~g~~~~A~~~~~~ 234 (647)
... .+...+..+..++.+.|++++|...++..++...... ...+ ..+...+.+.|++++|...|++
T Consensus 298 ~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~ 376 (1157)
T PRK11447 298 ANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQ 376 (1157)
T ss_pred hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 321 1344555555555666666666666666555432111 1111 1123345555666666666655
Q ss_pred CCC---CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC---
Q 006388 235 MAW---KNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPD-DFTLGSVISSCANLASLEEGTQFHGRSLVTGLI--- 307 (647)
Q Consensus 235 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~--- 307 (647)
... .+..++..+...+...|++++|++.|++..+. .|+ ...+..+...+. .++.++|..++..+......
T Consensus 377 Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~ 453 (1157)
T PRK11447 377 ARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSID 453 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHH
Confidence 543 23445555556666666666666666665543 222 222222222221 12233333332221110000
Q ss_pred -----cchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-H
Q 006388 308 -----SFITVSNALVTFYGKCGNIEDSHRLFNEMNV--R-DEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEV-T 378 (647)
Q Consensus 308 -----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t 378 (647)
.....+..+...+...|++++|.+.|++... | +...+..+...|.+.|++++|...|++..+. .|+.. .
T Consensus 454 ~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~ 531 (1157)
T PRK11447 454 DIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQ 531 (1157)
T ss_pred HHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHH
Confidence 0001122233444555666666666665541 2 3444555555666666666666666665542 22211 1
Q ss_pred HH--------------------------------------------HHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHH
Q 006388 379 LI--------------------------------------------GVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDH 414 (647)
Q Consensus 379 ~~--------------------------------------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 414 (647)
+. .....+...|+.++|..+++ ..+++...
T Consensus 532 ~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~------~~p~~~~~ 605 (1157)
T PRK11447 532 VYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR------QQPPSTRI 605 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH------hCCCCchH
Confidence 11 22333445555555555544 12345556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCC
Q 006388 415 YTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKG 492 (647)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 492 (647)
+..+.+.|.+.|++++|++.+++. ...| +...+..++..+...|++++|+..++++.+..|+++..+..++.++...|
T Consensus 606 ~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g 685 (1157)
T PRK11447 606 DLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALG 685 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCC
Confidence 677888888888888888888877 3445 47778888888888888888888888888888888888888888888888
Q ss_pred ChhHHHHHHHHHHhCC
Q 006388 493 KWDHVSQLRRTMREKG 508 (647)
Q Consensus 493 ~~~~a~~~~~~m~~~g 508 (647)
++++|.++++++....
T Consensus 686 ~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 686 DTAAAQRTFNRLIPQA 701 (1157)
T ss_pred CHHHHHHHHHHHhhhC
Confidence 8888888888887643
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=3.1e-21 Score=223.46 Aligned_cols=488 Identities=10% Similarity=0.014 Sum_probs=350.9
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcch-HHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHH
Q 006388 10 NLLISGHASHGSVNDAVKVYNLMLKDGLGNLSRIT-FSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSPLVDMYA 88 (647)
Q Consensus 10 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 88 (647)
-.+...+.+.|++++|++.|+++.+.+ +|+... ...........|+.++|...++.+++.. +.+......+..++.
T Consensus 116 l~~A~ll~~~g~~~eA~~~~~~~l~~~--p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~ 192 (1157)
T PRK11447 116 LQQARLLATTGRTEEALASYDKLFNGA--PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLF 192 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHccCC--CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 344556888999999999999998765 555421 1111222335688999999999998876 556778888999999
Q ss_pred hcCChHHHHHHhccCCCCCc------hH-----------------HH---------------------------------
Q 006388 89 KLGLIYDAKRGFDELPEKNI------VM-----------------YN--------------------------------- 112 (647)
Q Consensus 89 ~~g~~~~A~~~~~~~~~~~~------~~-----------------~~--------------------------------- 112 (647)
..|+.++|...|+++.+... .. +.
T Consensus 193 ~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~ 272 (1157)
T PRK11447 193 SSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA 272 (1157)
T ss_pred ccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH
Confidence 99999999998887642100 00 00
Q ss_pred -HHHHHHHhcCChHHHHHHhhcCCC--C-CeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh-hhH----------
Q 006388 113 -TMITGLLRRGLVEESRRLFRGMKD--K-DSISWTTMITGLMQNGLEREAIDLFREMRLEGLAMDQ-FTF---------- 177 (647)
Q Consensus 113 -~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~---------- 177 (647)
.+...+...|++++|+..|++..+ | +...+..|...|.+.|++++|+..|++..+....... ..+
T Consensus 273 ~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 273 RAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 112345578999999999988765 3 6678888999999999999999999998875422111 111
Q ss_pred --HHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHH-----
Q 006388 178 --GSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMAWK---NVVSWTAML----- 247 (647)
Q Consensus 178 --~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li----- 247 (647)
......+.+.|++++|...++.+++.. +.+...+..|..+|...|++++|++.|++.... +...+..+.
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~ 431 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQ 431 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 112345668899999999999998875 445667778889999999999999999887632 333333333
Q ss_pred -------------------------------------HHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccC
Q 006388 248 -------------------------------------VGYGQNGCSEEAVKIFCNMQRNGIEPD-DFTLGSVISSCANLA 289 (647)
Q Consensus 248 -------------------------------------~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~ 289 (647)
..+...|++++|++.|++..+. .|+ ...+..+...+...|
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 3344567777777777777664 343 344556666677777
Q ss_pred ChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC----h---------hhHHHHHHHHHHcCC
Q 006388 290 SLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVRD----E---------VSWTALVSGYAKFGK 356 (647)
Q Consensus 290 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d----~---------~~~~~li~~~~~~g~ 356 (647)
++++|...++.+.+.. +.+......+...+.+.++.++|...++.+.... . ..+..+...+...|+
T Consensus 510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 7777777777776543 2334444445555666777777777777765321 1 112234556778888
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHH
Q 006388 357 ANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFIN 436 (647)
Q Consensus 357 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 436 (647)
.++|+.+++. .+++...+..+...+.+.|++++|...|+...+. -+.+...+..++.+|...|++++|.+.++
T Consensus 589 ~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 589 EAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred HHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8888888772 2344556777888899999999999999999864 24457889999999999999999999999
Q ss_pred hC-CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc------hhHHHHHHhhhhCCChhHHHHHHHHHH-hC
Q 006388 437 KM-PFPPD-AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNP------ASYVLLSSIYASKGKWDHVSQLRRTMR-EK 507 (647)
Q Consensus 437 ~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~ 507 (647)
.. ...|+ ...+..+..++...|++++|...++++++..|+++ ..+..++.++...|++++|.+.+++.. ..
T Consensus 662 ~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~ 741 (1157)
T PRK11447 662 KLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVAS 741 (1157)
T ss_pred HHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 87 34454 66778888889999999999999999998876543 356678999999999999999998875 44
Q ss_pred CCcc
Q 006388 508 GVRK 511 (647)
Q Consensus 508 g~~~ 511 (647)
|+.|
T Consensus 742 ~~~~ 745 (1157)
T PRK11447 742 GITP 745 (1157)
T ss_pred CCCC
Confidence 5543
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=1.9e-21 Score=190.95 Aligned_cols=447 Identities=15% Similarity=0.119 Sum_probs=359.1
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCC---CCchHHHHHHHHHHhc
Q 006388 45 FSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSPLVDMYAKLGLIYDAKRGFDELPE---KNIVMYNTMITGLLRR 121 (647)
Q Consensus 45 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 121 (647)
...|..-..+.|++++|.+.-..+-... +.+....-.+-..+.+..+++....--....+ .-..+|..+...+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 5556666778899999887555443332 33333333344456666666654433222222 2346888999999999
Q ss_pred CChHHHHHHhhcCCCC---CeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHH-HHHHHhcCCChHHHHHHH
Q 006388 122 GLVEESRRLFRGMKDK---DSISWTTMITGLMQNGLEREAIDLFREMRLEGLAMDQFTFGS-VLTACGGLLALEEGKQIH 197 (647)
Q Consensus 122 g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~-ll~~~~~~~~~~~a~~~~ 197 (647)
|++++|+.+++.+.+. .+..|..+..++...|+.+.|.+.|.+..+ +.|+.....+ +-......|.+++|...+
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHH
Confidence 9999999999988763 567899999999999999999999999887 4566554333 223334568899999998
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---hhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 006388 198 AFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMAWKN---VVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPD 274 (647)
Q Consensus 198 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 274 (647)
.+.++.. +.-..+|+.|...+-..|++..|+..|++...-| ..+|-.|...|-..+.+++|+..|.+.... .|+
T Consensus 208 lkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn 284 (966)
T KOG4626|consen 208 LKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPN 284 (966)
T ss_pred HHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCc
Confidence 8888764 3345678889999999999999999999987644 357888999999999999999999988764 565
Q ss_pred H-HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHH
Q 006388 275 D-FTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMN---VRDEVSWTALVSG 350 (647)
Q Consensus 275 ~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~ 350 (647)
. ..+..+...|-..|.++.|...+++.++.. +.-...|+.|..++-..|++.+|...+.+.. .....+.+.|...
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni 363 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNI 363 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 4 677777778889999999999999998875 4456789999999999999999999999876 3356788999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcCh-HHHHHHHHHHHHcCCH
Q 006388 351 YAKFGKANETIDLFEKMLSHGLKPDEV-TLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIH-DHYTCMIDILSRAGRL 428 (647)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~ 428 (647)
|...|.+++|..+|....+ +.|.-. .++.|...|-+.|++++|+..+++.+ .+.|+. ..|+.+...|-..|+.
T Consensus 364 ~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhH
Confidence 9999999999999999887 577754 78899999999999999999999887 678874 7899999999999999
Q ss_pred HHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHH
Q 006388 429 EEAKSFINKM-PFPPD-AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRT 503 (647)
Q Consensus 429 ~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 503 (647)
++|.+.+.++ .+.|. +...+.|...|...|++.+|+..++.++++.|+-+.+|..++....--.+|.+-.+-+++
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~k 515 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKK 515 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHH
Confidence 9999999888 67787 778999999999999999999999999999999999999999888777777664433333
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=1.9e-19 Score=199.36 Aligned_cols=468 Identities=10% Similarity=-0.014 Sum_probs=326.3
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHH
Q 006388 18 SHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSPLVDMYAKLGLIYDAK 97 (647)
Q Consensus 18 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 97 (647)
..|++++|+..|++..+.. |.+..++..|...+...|+.++|....++.++.. +.|...+..|... +++++|.
T Consensus 56 ~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~La~i----~~~~kA~ 128 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSLAAI----PVEVKSV 128 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHHHHh----ccChhHH
Confidence 3599999999999999886 6678889999999999999999999999998876 3555555554222 8899999
Q ss_pred HHhccCCC--C-CchHHHHHHHH--------HHhcCChHHHHHHhhcCCCCC--eehHHHH-HHHHHhCCChhHHHHHHH
Q 006388 98 RGFDELPE--K-NIVMYNTMITG--------LLRRGLVEESRRLFRGMKDKD--SISWTTM-ITGLMQNGLEREAIDLFR 163 (647)
Q Consensus 98 ~~~~~~~~--~-~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~~--~~~~~~l-i~~~~~~g~~~~A~~~~~ 163 (647)
.+++++.+ | +...+..+... |.+.+....+++ .....++ ..+.... ...|.+.|++++|++++.
T Consensus 129 ~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 129 TTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 99999874 3 33445555554 777766666666 3333343 3333444 789999999999999999
Q ss_pred HHHHCCCCCChhhHHHHHHHHhc-CCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC----
Q 006388 164 EMRLEGLAMDQFTFGSVLTACGG-LLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMAWK---- 238 (647)
Q Consensus 164 ~m~~~g~~pd~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---- 238 (647)
++.+.+.. +..-...+-.++.. .++ +.+..++.. .+..+..+...+++.|.+.|+.++|.+++++++.-
T Consensus 207 ~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 207 EARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 99987643 33335555556666 355 666666442 33467888889999999999999999888877521
Q ss_pred -ChhHH-------------------------------------------H------------------------------
Q 006388 239 -NVVSW-------------------------------------------T------------------------------ 244 (647)
Q Consensus 239 -~~~~~-------------------------------------------~------------------------------ 244 (647)
...+| .
T Consensus 281 ~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 360 (987)
T PRK09782 281 AQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAE 360 (987)
T ss_pred CccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhH
Confidence 00000 0
Q ss_pred --------------------HHHHHHHhcCChhHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHhcc--------------
Q 006388 245 --------------------AMLVGYGQNGCSEEAVKIFCNMQRN-G-IEPDDFTLGSVISSCANL-------------- 288 (647)
Q Consensus 245 --------------------~li~~~~~~g~~~~A~~~~~~m~~~-g-~~p~~~t~~~ll~a~~~~-------------- 288 (647)
-+-....+.|+.++|.++|++.... + -.++......++..+...
T Consensus 361 ~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 440 (987)
T PRK09782 361 ALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSK 440 (987)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc
Confidence 0001123455566666666655431 1 111111121222222222
Q ss_pred -------------------------------------------------CChHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 006388 289 -------------------------------------------------ASLEEGTQFHGRSLVTGLISFITVSNALVTF 319 (647)
Q Consensus 289 -------------------------------------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 319 (647)
+..++|...+....... |+......+...
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~a 518 (987)
T PRK09782 441 PLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQ--PDAWQHRAVAYQ 518 (987)
T ss_pred ccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhC--CchHHHHHHHHH
Confidence 33344555444444332 333333334444
Q ss_pred HHhcCCHHHHHHHHhhcCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCCcHHHHH
Q 006388 320 YGKCGNIEDSHRLFNEMNV--RDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEV-TLIGVLSACSRAGLVEKGR 396 (647)
Q Consensus 320 ~~~~g~~~~A~~~~~~~~~--~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~ 396 (647)
+...|++++|...|+++.. ++...+..+...+.+.|+.++|...+++..+.. |+.. .+..+.......|++++|.
T Consensus 519 l~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 519 AYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred HHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHH
Confidence 5678888888888887652 344556667777888888888888888888753 4433 3333444555679999999
Q ss_pred HHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 006388 397 HYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPPD-AIGWATLLSSCRIHGNVEIGKWAAESLLELD 474 (647)
Q Consensus 397 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 474 (647)
..++...+ ..|+...|..+..++.+.|++++|...+++. ...|+ ...+..+..++...|+.++|+..++++++.+
T Consensus 597 ~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 597 NDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99998874 4677888999999999999999999999988 55665 6788888889999999999999999999999
Q ss_pred CCCchhHHHHHHhhhhCCChhHHHHHHHHHHhC
Q 006388 475 PYNPASYVLLSSIYASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 475 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 507 (647)
|+++..+..++.+|...|++++|...+++..+.
T Consensus 674 P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 674 PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999998764
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=1.8e-20 Score=184.17 Aligned_cols=415 Identities=13% Similarity=0.123 Sum_probs=339.2
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCCCCc---hHHHHHHHHHHhcCChHHHHHHhhcCCCC---CeehHHHHHHHHHhCC
Q 006388 80 GSPLVDMYAKLGLIYDAKRGFDELPEKNI---VMYNTMITGLLRRGLVEESRRLFRGMKDK---DSISWTTMITGLMQNG 153 (647)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g 153 (647)
...|..-..+.|++.+|++--...-+.|. ...-.+-.++.+..+++....--....+. -..+|..+...+-..|
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 34455666688999999887665554322 12222334555666666544333222222 3568999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchh-HHHHHHHHHHhcCCHHHHHHH
Q 006388 154 LEREAIDLFREMRLEGLAM-DQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVF-VGSALVDMYCKCKSIKYAESV 231 (647)
Q Consensus 154 ~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~ 231 (647)
++++|+.+++.|.+. +| ....|..+..++...|+.+.|.+.+.+.++.. |+.. +.+.+.......|++++|...
T Consensus 131 ~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 131 QLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHH
Confidence 999999999999985 45 45689999999999999999999999998864 4433 334456666778999999998
Q ss_pred HhcCCCCC---hhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHhCCC
Q 006388 232 FRTMAWKN---VVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDD-FTLGSVISSCANLASLEEGTQFHGRSLVTGLI 307 (647)
Q Consensus 232 ~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~ 307 (647)
+.+..+.+ .++|+.|...+-.+|+...|++.|++..+. .|+- ..|..+...+...+.++.|...+.+..... +
T Consensus 207 YlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-p 283 (966)
T KOG4626|consen 207 YLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-P 283 (966)
T ss_pred HHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-C
Confidence 88766433 478999999999999999999999999874 5654 578888888888899999998888877653 3
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHH
Q 006388 308 SFITVSNALVTFYGKCGNIEDSHRLFNEMNVR---DEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEV-TLIGVL 383 (647)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll 383 (647)
....++..+...|-.+|.++-|...+++.... =+..|+.|..++-..|++.+|.+.|.+.+. +.|+.. ..+.|.
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLg 361 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLG 361 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHH
Confidence 45666777888899999999999999998733 367899999999999999999999999988 466655 888999
Q ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCcC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCCh
Q 006388 384 SACSRAGLVEKGRHYFEIMVKEYGIRPI-HDHYTCMIDILSRAGRLEEAKSFINKM-PFPPD-AIGWATLLSSCRIHGNV 460 (647)
Q Consensus 384 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~ 460 (647)
..+...|.+++|..+|....+ +.|. ...++.|...|-..|++++|...+++. .++|+ +..++.+...|...|++
T Consensus 362 ni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhH
Confidence 999999999999999998764 4554 477899999999999999999999988 78898 78999999999999999
Q ss_pred hHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 461 EIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 461 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
+.|...+.+++..+|.-..++..|+.+|-..|++.+|.+-++...+
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999998776
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.88 E-value=9.1e-18 Score=186.07 Aligned_cols=476 Identities=9% Similarity=-0.014 Sum_probs=313.4
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhC-CCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhcC
Q 006388 13 ISGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSS-RRCVDLGRQIHGHILKFGFGSYVFVGSPLVDMYAKLG 91 (647)
Q Consensus 13 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 91 (647)
...|.+.|++++|++++.++.+.+ +.+..-...|..++.+ .++ +.+..++.. .+..++.+...++..|.+.|
T Consensus 189 ~rlY~~l~dw~~Ai~lL~~L~k~~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G 261 (987)
T PRK09782 189 LQRAIYLKQWSQADTLYNEARQQN--TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRG 261 (987)
T ss_pred HHHHHHHhCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCC
Confidence 555555666666666666666554 3334434444444444 233 444444321 22244555556666666666
Q ss_pred ChHHHHHHhccCCC-----CCchHHHH------------------------------HHHHHHhcCChHHHHHHhhcCCC
Q 006388 92 LIYDAKRGFDELPE-----KNIVMYNT------------------------------MITGLLRRGLVEESRRLFRGMKD 136 (647)
Q Consensus 92 ~~~~A~~~~~~~~~-----~~~~~~~~------------------------------li~~~~~~g~~~~A~~~~~~~~~ 136 (647)
+.++|.+++.+++. |+..+|-- ++..+.+.++++.+.++... ..
T Consensus 262 ~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 340 (987)
T PRK09782 262 EKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLAT-LP 340 (987)
T ss_pred CHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcC-CC
Confidence 66666666555542 11111111 12223344444444444221 11
Q ss_pred CCeehHHHHHHHH--HhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHc-C-CCCchhHH
Q 006388 137 KDSISWTTMITGL--MQNGLEREAIDLFREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRN-D-HKDNVFVG 212 (647)
Q Consensus 137 ~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g-~~~~~~~~ 212 (647)
.+. . ..++.. ...+...++.+.+..|.+... -+....--+--.....|+.++|.+++...... + -..+....
T Consensus 341 ~~~-~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 416 (987)
T PRK09782 341 ANE-M--LEERYAVSVATRNKAEALRLARLLYQQEP-ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLM 416 (987)
T ss_pred cch-H--HHHHHhhccccCchhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHH
Confidence 111 1 122211 122444555555555544311 12222222222345678899999999888763 1 12244556
Q ss_pred HHHHHHHHhcCC---HHHHHHH-------------------------HhcCCC---C--ChhHHHHHHHHHHhcCChhHH
Q 006388 213 SALVDMYCKCKS---IKYAESV-------------------------FRTMAW---K--NVVSWTAMLVGYGQNGCSEEA 259 (647)
Q Consensus 213 ~~li~~y~~~g~---~~~A~~~-------------------------~~~~~~---~--~~~~~~~li~~~~~~g~~~~A 259 (647)
+-|+..|.+.+. ..++..+ +..... . +...|..+..++.. ++.++|
T Consensus 417 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eA 495 (987)
T PRK09782 417 ARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVA 495 (987)
T ss_pred HHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHH
Confidence 678888888876 3333332 111111 2 55678888887776 899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 006388 260 VKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVR 339 (647)
Q Consensus 260 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 339 (647)
+..|.+.... .|+......+..++...|++++|...++.+... +|+...+..+...+.+.|++++|...|++....
T Consensus 496 i~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l 571 (987)
T PRK09782 496 LYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR 571 (987)
T ss_pred HHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9988888765 477665545555667899999999999987654 344445567788899999999999999988755
Q ss_pred ChhhHHHHH---HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHH
Q 006388 340 DEVSWTALV---SGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYT 416 (647)
Q Consensus 340 d~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 416 (647)
++..++... ......|++++|+..|++..+. .|+...+..+..++.+.|++++|...++..... -+.+...+.
T Consensus 572 ~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~ 647 (987)
T PRK09782 572 GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQA 647 (987)
T ss_pred CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 444333333 3334459999999999999984 678788999999999999999999999999853 234567888
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCCh
Q 006388 417 CMIDILSRAGRLEEAKSFINKM-PFPPD-AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKW 494 (647)
Q Consensus 417 ~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 494 (647)
.+...+...|++++|++.+++. ...|+ ...+..+..++...|++++|+..++++++++|++..+....+++..+..++
T Consensus 648 nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~ 727 (987)
T PRK09782 648 ALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNF 727 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHH
Confidence 8999999999999999999987 45564 788999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCC
Q 006388 495 DHVSQLRRTMREKGV 509 (647)
Q Consensus 495 ~~a~~~~~~m~~~g~ 509 (647)
+.|.+-+++.-....
T Consensus 728 ~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 728 RRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHHhhcCc
Confidence 999988877655443
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=6.5e-18 Score=183.99 Aligned_cols=414 Identities=11% Similarity=-0.002 Sum_probs=277.2
Q ss_pred HHHHHHHhcCChHHHHHHhccCCC--CCchHHHHHHHHHHhcCChHHHHHHhhcCCCC---CeehHHHHHHHHHhCCChh
Q 006388 82 PLVDMYAKLGLIYDAKRGFDELPE--KNIVMYNTMITGLLRRGLVEESRRLFRGMKDK---DSISWTTMITGLMQNGLER 156 (647)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~ 156 (647)
.+...|.+.|++++|...|++..+ |+...|..+..+|.+.|++++|++.++...+. +...|..+..+|...|+++
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence 445566677777777777776553 56666777777777777777777777665543 3446666777777777777
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 006388 157 EAIDLFREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMA 236 (647)
Q Consensus 157 ~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 236 (647)
+|+.-|......+-. +......++..... ..+.......++.. +.+...+..+.. |........+..-++...
T Consensus 212 eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 212 DALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred HHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhccc
Confidence 777776655443211 11111111111110 11122222222221 222222222222 222111111111111111
Q ss_pred CCCh---hHHHHHHHH---HHhcCChhHHHHHHHHHHHCC-CCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCc
Q 006388 237 WKNV---VSWTAMLVG---YGQNGCSEEAVKIFCNMQRNG-IEPD-DFTLGSVISSCANLASLEEGTQFHGRSLVTGLIS 308 (647)
Q Consensus 237 ~~~~---~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~ 308 (647)
+.+. ..+..+... ....+++++|++.|++....+ ..|+ ...+..+...+...|++++|...+...++.. +.
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~ 363 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PR 363 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC
Confidence 1111 111111111 123478999999999998765 3443 3456677777788999999999999998764 33
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 006388 309 FITVSNALVTFYGKCGNIEDSHRLFNEMN---VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPD-EVTLIGVLS 384 (647)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 384 (647)
....+..+...+...|++++|...|++.. ..+...|..+...+...|++++|+..|++..+. .|+ ...+..+..
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~ 441 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGV 441 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHH
Confidence 46678888999999999999999999875 336788999999999999999999999999885 454 456777888
Q ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCh-h-------hHHHHHHHHH
Q 006388 385 ACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPPDA-I-------GWATLLSSCR 455 (647)
Q Consensus 385 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~ll~~~~ 455 (647)
++.+.|++++|...|+...+. .+.+...++.+..++...|++++|.+.|++. ...|+. . .++..+..+.
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~ 519 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQ 519 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHH
Confidence 899999999999999998863 3445788999999999999999999999986 344431 1 1122222334
Q ss_pred hcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhC
Q 006388 456 IHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 456 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 507 (647)
..|++++|...++++++++|++...+..++.+|...|++++|.+.+++..+.
T Consensus 520 ~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 520 WKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999999999999999999999998764
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=6.9e-19 Score=181.95 Aligned_cols=290 Identities=13% Similarity=0.075 Sum_probs=189.7
Q ss_pred HhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCChHH
Q 006388 220 CKCKSIKYAESVFRTMAWK---NVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPD---DFTLGSVISSCANLASLEE 293 (647)
Q Consensus 220 ~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~~~~~~ 293 (647)
...|++++|...|+++... +..+|..+...+...|++++|..+++.+...+..++ ...+..+...+...|+++.
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 3444444555555444321 223444455555555555555555555544321111 1233444444555555555
Q ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC--------hhhHHHHHHHHHHcCChHHHHHHHH
Q 006388 294 GTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVRD--------EVSWTALVSGYAKFGKANETIDLFE 365 (647)
Q Consensus 294 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d--------~~~~~~li~~~~~~g~~~~A~~~~~ 365 (647)
|..++..+.+.. +.+..+++.++..|.+.|++++|.+.|+.+...+ ...|..+...+.+.|++++|...|+
T Consensus 126 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 126 AEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 555555554432 2334455556666666666666666666554221 1134556677778888888888888
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 006388 366 KMLSHGLKPD-EVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPPD 443 (647)
Q Consensus 366 ~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 443 (647)
++.+. .|+ ...+..+...+.+.|++++|.++|+.+.+. +.......+..++.+|.+.|++++|.+.++++ ...|+
T Consensus 205 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~ 281 (389)
T PRK11788 205 KALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPG 281 (389)
T ss_pred HHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 88774 344 446667778888889999999998888753 21122456788889999999999999999887 45677
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhh---CCChhHHHHHHHHHHhCCCccCCC
Q 006388 444 AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYAS---KGKWDHVSQLRRTMREKGVRKDPG 514 (647)
Q Consensus 444 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~ 514 (647)
...+..++..+.+.|++++|...++++++..|++. .+..+...+.. .|+.+++..++++|.+++++++|.
T Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 282 ADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 66778888999999999999999999999999765 55555555443 569999999999999999999986
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=1e-18 Score=180.61 Aligned_cols=292 Identities=11% Similarity=-0.024 Sum_probs=178.1
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCc---hhhHHHHHHHHHhc
Q 006388 14 SGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSY---VFVGSPLVDMYAKL 90 (647)
Q Consensus 14 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~ 90 (647)
..+...|++++|+..|+++.+.+ |.+..++..+...+...|++++|..+++.+++.+..++ ...+..+...|.+.
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 34456677888888888887765 55666777777777778888888887777776432221 24566677777777
Q ss_pred CChHHHHHHhccCCC---CCchHHHHHHHHHHhcCChHHHHHHhhcCCCCCe--------ehHHHHHHHHHhCCChhHHH
Q 006388 91 GLIYDAKRGFDELPE---KNIVMYNTMITGLLRRGLVEESRRLFRGMKDKDS--------ISWTTMITGLMQNGLEREAI 159 (647)
Q Consensus 91 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~A~ 159 (647)
|++++|..+|+++.+ .+..+++.++..+.+.|++++|.+.|+.+.+.+. ..|..+...+.+.|++++|.
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 777777777777764 3445666666666667777777666666543211 12344555566666666666
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--
Q 006388 160 DLFREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMAW-- 237 (647)
Q Consensus 160 ~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-- 237 (647)
..|+++.+.. +.+...+..+...+.+.|++++|.++++.+.+.+......+++.++.+|.+.|++++|...|+++..
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 6666665532 1123345555566666666666666666666543222234455666666666666666666665542
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---cCChHHHHHHHHHHHHhCCCcch
Q 006388 238 KNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCAN---LASLEEGTQFHGRSLVTGLISFI 310 (647)
Q Consensus 238 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~---~~~~~~a~~~~~~~~~~~~~~~~ 310 (647)
|+...+..++..+.+.|++++|..+|+++.+. .|+..++..++..+.. .|+.+++..+++.+.+.++.+++
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 34444456666666666666666666666553 4666666655555443 33556666666666655544443
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=6.3e-17 Score=175.65 Aligned_cols=330 Identities=10% Similarity=-0.017 Sum_probs=242.5
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 006388 141 SWTTMITGLMQNGLEREAIDLFREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYC 220 (647)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 220 (647)
....++..+.+.|++++|..+++........+ ...+..++.++...|+++.|.+.++.+++.. +.+...+..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 34456667777888888888888877754433 3334444455666888888888888887764 445666777888888
Q ss_pred hcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 006388 221 KCKSIKYAESVFRTMAW---KNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQF 297 (647)
Q Consensus 221 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 297 (647)
+.|++++|...|++... .+...|..+...+...|++++|...++++.... |+.......+..+...|++++|...
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDL 199 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888888887754 356678888888888888888888888776653 3332222223346778888888888
Q ss_pred HHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHH----HHHHHHHHHHC
Q 006388 298 HGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMN---VRDEVSWTALVSGYAKFGKANE----TIDLFEKMLSH 370 (647)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~ 370 (647)
+..+.+....++......+...+.+.|++++|...|++.. ..+...+..+...|.+.|++++ |+..|++..+.
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 8887766433444445556677888899999988888776 2356778888888888998885 78889988874
Q ss_pred CCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCChhh-H
Q 006388 371 GLKPDE-VTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPPDAIG-W 447 (647)
Q Consensus 371 g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~ 447 (647)
.|+. ..+..+...+...|++++|...++..... -+.+...+..+..+|.+.|++++|.+.++++ ...|+... +
T Consensus 280 --~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~ 355 (656)
T PRK15174 280 --NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWN 355 (656)
T ss_pred --CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHH
Confidence 4554 47778888889999999999999988753 2234566777888899999999999999887 35566433 3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 006388 448 ATLLSSCRIHGNVEIGKWAAESLLELDPYNP 478 (647)
Q Consensus 448 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 478 (647)
..+..++...|+.++|...++++++..|++.
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 3456678889999999999999999988753
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=3.3e-16 Score=173.77 Aligned_cols=398 Identities=8% Similarity=-0.039 Sum_probs=203.8
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCchHHHHHHHHHHhcCCh
Q 006388 45 FSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSPLVDMYAKLGLIYDAKRGFDELPEKNIVMYNTMITGLLRRGLV 124 (647)
Q Consensus 45 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 124 (647)
..-.+......|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++..+.
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~------------------ 78 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL------------------ 78 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------
Confidence 3333444445555555555555554322 233334445555555555555555555443211
Q ss_pred HHHHHHhhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcC
Q 006388 125 EESRRLFRGMKDKDSISWTTMITGLMQNGLEREAIDLFREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRND 204 (647)
Q Consensus 125 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 204 (647)
...+...+..+...+...|++++|+..+++..+. .|+...+..+..++...|+.++|...++.+++..
T Consensus 79 ----------~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~ 146 (765)
T PRK10049 79 ----------EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRA 146 (765)
T ss_pred ----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 0113444556666666667777777777666654 2322225555556666677777777776666654
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChh--------HHHHHHHHHH-----hcCCh---hHHHHHHHHHHH
Q 006388 205 HKDNVFVGSALVDMYCKCKSIKYAESVFRTMAWKNVV--------SWTAMLVGYG-----QNGCS---EEAVKIFCNMQR 268 (647)
Q Consensus 205 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~--------~~~~li~~~~-----~~g~~---~~A~~~~~~m~~ 268 (647)
+.+..++..+..++.+.|..+.|...++.... ++. ....++.... ..+++ ++|++.++.+.+
T Consensus 147 -P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~ 224 (765)
T PRK10049 147 -PQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEA 224 (765)
T ss_pred -CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHh
Confidence 33444555566677777777777777776664 211 1111222221 11223 567777777764
Q ss_pred C-CCCCCHH-HHH----HHHHHHhccCChHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-
Q 006388 269 N-GIEPDDF-TLG----SVISSCANLASLEEGTQFHGRSLVTGLI-SFITVSNALVTFYGKCGNIEDSHRLFNEMNVRD- 340 (647)
Q Consensus 269 ~-g~~p~~~-t~~----~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d- 340 (647)
. ...|+.. .+. ..+.++...++.++|...++.+.+.+.+ |+. ....+...|...|++++|+..|+++...+
T Consensus 225 ~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p 303 (765)
T PRK10049 225 LWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPE 303 (765)
T ss_pred hcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCC
Confidence 3 1223221 111 1123334556667777777766665421 211 11224556666667777766666654221
Q ss_pred ------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-----------CCCCH---HHHHHHHHHHhcCCcHHHHHHHHH
Q 006388 341 ------EVSWTALVSGYAKFGKANETIDLFEKMLSHG-----------LKPDE---VTLIGVLSACSRAGLVEKGRHYFE 400 (647)
Q Consensus 341 ------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~ 400 (647)
...+..+..++...|++++|..+++++.... -.|+. ..+..+...+...|+.++|++.++
T Consensus 304 ~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~ 383 (765)
T PRK10049 304 TIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAR 383 (765)
T ss_pred CCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1234444555666677777777766666531 01221 122333444555566666666655
Q ss_pred HHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 006388 401 IMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPPD-AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNP 478 (647)
Q Consensus 401 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 478 (647)
.+... .+.+...+..+..++...|++++|++.+++. ...|+ ...+..+...+...|++++|+.+++++++..|+++
T Consensus 384 ~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 384 ELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 55432 2333455555555555556666666555555 33343 34444444455555556666666666655555554
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=3.7e-16 Score=170.32 Aligned_cols=421 Identities=11% Similarity=-0.004 Sum_probs=231.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHH
Q 006388 9 WNLLISGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSPLVDMYA 88 (647)
Q Consensus 9 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 88 (647)
+......|.+.|++++|+..|++..+. .|+...|..+..++...|++++|...+...++.. +.+...+..+..+|.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 345566677777888888888777765 4566677777777777777777777777777665 345566667777777
Q ss_pred hcCChHHHHHHhccCCCC---CchHHHHHHHHHHhcCChHHHHHHhhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHHH
Q 006388 89 KLGLIYDAKRGFDELPEK---NIVMYNTMITGLLRRGLVEESRRLFRGMKDKDSISWTTMITGLMQNGLEREAIDLFREM 165 (647)
Q Consensus 89 ~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 165 (647)
..|++++|..-|...... +......++..+........+...++.-+ ++..++..+.. |........+..-+.+-
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDS 283 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhcc
Confidence 777777777666443211 11111111111111111223333332221 12223322222 21111111111111110
Q ss_pred HHCCCCCCh-hhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC------
Q 006388 166 RLEGLAMDQ-FTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMAWK------ 238 (647)
Q Consensus 166 ~~~g~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~------ 238 (647)
.+ ..|+. ..+..+.... .-....+++++|.+.|+.....
T Consensus 284 ~~--~~~~~~~~~~~l~~~~--------------------------------~e~~~~~~y~~A~~~~~~al~~~~~~~~ 329 (615)
T TIGR00990 284 NE--LDEETGNGQLQLGLKS--------------------------------PESKADESYEEAARAFEKALDLGKLGEK 329 (615)
T ss_pred cc--cccccccchHHHHHHH--------------------------------HHhhhhhhHHHHHHHHHHHHhcCCCChh
Confidence 00 00100 0000000000 0001224455555555544321
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHH
Q 006388 239 NVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPD-DFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALV 317 (647)
Q Consensus 239 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 317 (647)
+...|+.+...+...|++++|+..|++.... .|+ ...|..+...+...|++++|...+..+++.. +.+..++..+.
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg 406 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRA 406 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 2334555555555666666666666665543 333 3345555555555666666666666655543 33455666666
Q ss_pred HHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHH
Q 006388 318 TFYGKCGNIEDSHRLFNEMN---VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPD-EVTLIGVLSACSRAGLVE 393 (647)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 393 (647)
..|...|++++|...|++.. ..+...|..+...+.+.|++++|+..|++..+. .|+ ...+..+...+...|+++
T Consensus 407 ~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~ 484 (615)
T TIGR00990 407 QLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFD 484 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHH
Confidence 67777777777777777664 224556666677777777777777777777663 343 446666777777777888
Q ss_pred HHHHHHHHHHHhcCCCcC-------h-HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCChhHH
Q 006388 394 KGRHYFEIMVKEYGIRPI-------H-DHYTCMIDILSRAGRLEEAKSFINKM-PFPPD-AIGWATLLSSCRIHGNVEIG 463 (647)
Q Consensus 394 ~a~~~~~~~~~~~~~~p~-------~-~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a 463 (647)
+|...|+..... .|+ . ..++.....+...|++++|.+++++. ...|+ ...+..+...+...|++++|
T Consensus 485 ~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eA 561 (615)
T TIGR00990 485 EAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEA 561 (615)
T ss_pred HHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 887777776542 221 1 11222233344568888888888875 45554 45678888888888888888
Q ss_pred HHHHHHHhccCCCC
Q 006388 464 KWAAESLLELDPYN 477 (647)
Q Consensus 464 ~~~~~~~~~~~p~~ 477 (647)
...++++.++.+..
T Consensus 562 i~~~e~A~~l~~~~ 575 (615)
T TIGR00990 562 LKLFERAAELARTE 575 (615)
T ss_pred HHHHHHHHHHhccH
Confidence 88888888877643
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=3.4e-16 Score=173.65 Aligned_cols=387 Identities=9% Similarity=-0.001 Sum_probs=287.0
Q ss_pred HHHHHHhcCChHHHHHHhhcCCC---CCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhcCCC
Q 006388 114 MITGLLRRGLVEESRRLFRGMKD---KDSISWTTMITGLMQNGLEREAIDLFREMRLEGLAMD-QFTFGSVLTACGGLLA 189 (647)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~~ 189 (647)
.+......|+.++|++++..... .+...+..+...+.+.|++++|.++|++..+. .|+ ......+...+...|+
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCC
Confidence 34444455555555555555443 23445889999999999999999999998874 343 4556677788889999
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 006388 190 LEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMAWK---NVVSWTAMLVGYGQNGCSEEAVKIFCNM 266 (647)
Q Consensus 190 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m 266 (647)
.++|...++.+++.. +.+.. +..+..++...|+.++|...++++... +...+..+...+...|..++|++.++..
T Consensus 99 ~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 99 YDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 999999999999874 44555 888999999999999999999988643 5567777888899999999999998766
Q ss_pred HHCCCCCCHH------HHHHHHHHHh-----ccCCh---HHHHHHHHHHHHh-CCCcchh-H-HHH---HHHHHHhcCCH
Q 006388 267 QRNGIEPDDF------TLGSVISSCA-----NLASL---EEGTQFHGRSLVT-GLISFIT-V-SNA---LVTFYGKCGNI 326 (647)
Q Consensus 267 ~~~g~~p~~~------t~~~ll~a~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~-~~~---li~~~~~~g~~ 326 (647)
.. .|+.. .....+.... ..+.+ +.|.+.++.+.+. ...|+.. . ..+ .+..+...|++
T Consensus 177 ~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~ 253 (765)
T PRK10049 177 NL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRY 253 (765)
T ss_pred CC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhH
Confidence 53 33320 1111222211 11223 6677777777754 2222221 1 111 12344577999
Q ss_pred HHHHHHHhhcCCCC---hh-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhcCCcHHHHHHHH
Q 006388 327 EDSHRLFNEMNVRD---EV-SWTALVSGYAKFGKANETIDLFEKMLSHGLKP---DEVTLIGVLSACSRAGLVEKGRHYF 399 (647)
Q Consensus 327 ~~A~~~~~~~~~~d---~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~ 399 (647)
++|...|+.+...+ +. .-..+...|...|++++|+..|+++.+..... .......+..++...|++++|.+++
T Consensus 254 ~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l 333 (765)
T PRK10049 254 KDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVT 333 (765)
T ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 99999999988542 11 12225678999999999999999988643111 1235666677889999999999999
Q ss_pred HHHHHhcC----------CCcC---hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHH
Q 006388 400 EIMVKEYG----------IRPI---HDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGK 464 (647)
Q Consensus 400 ~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~ 464 (647)
+.+..... -.|+ ...+..+...+...|++++|+++++++ ...| +...+..+...+...|++++|+
T Consensus 334 ~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~ 413 (765)
T PRK10049 334 AHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAE 413 (765)
T ss_pred HHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 99876421 1123 235567788999999999999999997 3345 4788999999999999999999
Q ss_pred HHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhC
Q 006388 465 WAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 465 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 507 (647)
..++++++++|+++..+..++..+...|+|++|..+++++.+.
T Consensus 414 ~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 414 NELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999874
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=5.1e-15 Score=161.09 Aligned_cols=423 Identities=8% Similarity=-0.034 Sum_probs=281.0
Q ss_pred HhCCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCch-HHHHH--HHHHHhcCChHHHH
Q 006388 52 SSSRRCVDLGRQIHGHILKFGFGSYVFVGSPLVDMYAKLGLIYDAKRGFDELPEKNIV-MYNTM--ITGLLRRGLVEESR 128 (647)
Q Consensus 52 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l--i~~~~~~g~~~~A~ 128 (647)
..+.|++..|...+.++++......+.++ .++..+...|+.++|+..+++...|+.. .+..+ ...+...|++++|.
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 45667777777777777665422112233 6666677777777777777777655333 23333 34566667777777
Q ss_pred HHhhcCCCC---CeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCC
Q 006388 129 RLFRGMKDK---DSISWTTMITGLMQNGLEREAIDLFREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDH 205 (647)
Q Consensus 129 ~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 205 (647)
++|+++.+. |...+..++..+.+.++.++|++.++++... .|+...+..++..+...++..+|.+.++.+++..
T Consensus 123 ely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~- 199 (822)
T PRK14574 123 ALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA- 199 (822)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-
Confidence 777776653 3455666677777778888888888777664 4555555444444444555555777777777764
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-ChhHHH----HHHHHHH---------hcCC---hhHHHHHHHHHHH
Q 006388 206 KDNVFVGSALVDMYCKCKSIKYAESVFRTMAWK-NVVSWT----AMLVGYG---------QNGC---SEEAVKIFCNMQR 268 (647)
Q Consensus 206 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-~~~~~~----~li~~~~---------~~g~---~~~A~~~~~~m~~ 268 (647)
+.+...+..++....+.|-...|.++..+-+.- +...+. ..+.-.+ ...+ .+.|+.-++.+..
T Consensus 200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~ 279 (822)
T PRK14574 200 PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLT 279 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHh
Confidence 456666677777788888877777777765521 111100 0001111 1112 3445555555554
Q ss_pred C-CCCCCH-H----HHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---
Q 006388 269 N-GIEPDD-F----TLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVR--- 339 (647)
Q Consensus 269 ~-g~~p~~-~----t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--- 339 (647)
. +-.|.. . ...-.+-++...++..++...++.+...+.+....+-.++.++|...+++++|..+++.+...
T Consensus 280 ~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~ 359 (822)
T PRK14574 280 RWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGK 359 (822)
T ss_pred hccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccc
Confidence 2 222322 1 222345677788888899999988888887666677888899999999999999999887432
Q ss_pred ------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-----------CC--CHH-HHHHHHHHHhcCCcHHHHHHHH
Q 006388 340 ------DEVSWTALVSGYAKFGKANETIDLFEKMLSHGL-----------KP--DEV-TLIGVLSACSRAGLVEKGRHYF 399 (647)
Q Consensus 340 ------d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p--~~~-t~~~ll~a~~~~g~~~~a~~~~ 399 (647)
+......|.-+|...+++++|..+++++.+.-. .| |-. .+..++..+...|++.+|.+.+
T Consensus 360 ~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~l 439 (822)
T PRK14574 360 TFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKL 439 (822)
T ss_pred ccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 223346778888889999999999999887311 12 222 3334456678889999999999
Q ss_pred HHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 006388 400 EIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPPD-AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYN 477 (647)
Q Consensus 400 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 477 (647)
+.+.. .-+-|......+.+++...|.+.+|++.++.. ...|+ ..+....+.+....+++++|..+.+.+.+..|++
T Consensus 440 e~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~ 517 (822)
T PRK14574 440 EDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPED 517 (822)
T ss_pred HHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCc
Confidence 99875 34557788888999999999999999999776 45565 5566677777888899999999999999999987
Q ss_pred chh
Q 006388 478 PAS 480 (647)
Q Consensus 478 ~~~ 480 (647)
+.+
T Consensus 518 ~~~ 520 (822)
T PRK14574 518 IPS 520 (822)
T ss_pred hhH
Confidence 644
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.79 E-value=7.9e-16 Score=167.11 Aligned_cols=347 Identities=12% Similarity=-0.010 Sum_probs=197.6
Q ss_pred HcCCChhHHHHHHHHHHHCCCC-CCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHH
Q 006388 17 ASHGSVNDAVKVYNLMLKDGLG-NLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSPLVDMYAKLGLIYD 95 (647)
Q Consensus 17 ~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 95 (647)
.+..+++.-.-.|....+..-. ..+..-...++..+.+.|+.+.|..+++.++.... .+......++......|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAK-NGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCC-CchhHHHHHhhhHhhcCCHHH
Confidence 3455555555555444332100 22344455666777777888888888777777653 334444445555666788888
Q ss_pred HHHHhccCCC--C-CchHHHHHHHHHHhcCChHHHHHHhhcCCC--C-CeehHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 006388 96 AKRGFDELPE--K-NIVMYNTMITGLLRRGLVEESRRLFRGMKD--K-DSISWTTMITGLMQNGLEREAIDLFREMRLEG 169 (647)
Q Consensus 96 A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 169 (647)
|...|+++.+ | +...|..+...+.+.|++++|...|++..+ | +...|..+...+.+.|++++|...++.+....
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 8888877764 3 334566666666666666666666666544 2 44566667777777777777777777665533
Q ss_pred CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHH
Q 006388 170 LAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMAW---KNVVSWTAM 246 (647)
Q Consensus 170 ~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~l 246 (647)
|+.......+..+...|++++|...++.+++....++......+...+.+.|++++|...|++... .+...+..+
T Consensus 175 --P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 252 (656)
T PRK15174 175 --PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL 252 (656)
T ss_pred --CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 222221111223556667777777666665553333333344445566666666666666666543 244556666
Q ss_pred HHHHHhcCChhH----HHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 006388 247 LVGYGQNGCSEE----AVKIFCNMQRNGIEPD-DFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYG 321 (647)
Q Consensus 247 i~~~~~~g~~~~----A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 321 (647)
...|...|++++ |+..|++.... .|+ ...+..+...+...|++++|...++.+.+.. +.+..+...+...|.
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~ 329 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALR 329 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 666666666664 56666666553 333 3455555555666666666666666655543 223444455556666
Q ss_pred hcCCHHHHHHHHhhcC--CCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 006388 322 KCGNIEDSHRLFNEMN--VRDE-VSWTALVSGYAKFGKANETIDLFEKMLS 369 (647)
Q Consensus 322 ~~g~~~~A~~~~~~~~--~~d~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (647)
+.|++++|...|+++. .|+. ..+..+..++...|+.++|+..|++..+
T Consensus 330 ~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 330 QVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6666666666665554 2222 2222234455566666666666666555
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.78 E-value=5.5e-15 Score=153.72 Aligned_cols=443 Identities=11% Similarity=0.029 Sum_probs=278.9
Q ss_pred hHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCC------chHHHHHHHHHHhcCChHHHHHHh
Q 006388 58 VDLGRQIHGHILKFGFGSYVFVGSPLVDMYAKLGLIYDAKRGFDELPEKN------IVMYNTMITGLLRRGLVEESRRLF 131 (647)
Q Consensus 58 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~ 131 (647)
+..|.+.+...-... +.++.+.+.|...|.-.|++..+..+...+...+ ..+|-.+.++|-..|++++|...|
T Consensus 252 ~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY 330 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY 330 (1018)
T ss_pred HHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 334444444443333 3455566666666666666666666655554321 124555666666666666666666
Q ss_pred hcCCCC---C-eehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhcCC----ChHHHHHHHHHHHH
Q 006388 132 RGMKDK---D-SISWTTMITGLMQNGLEREAIDLFREMRLEGLAMD-QFTFGSVLTACGGLL----ALEEGKQIHAFIIR 202 (647)
Q Consensus 132 ~~~~~~---~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~ 202 (647)
.+..+. + +..+--|...|.+.|+.+.+...|+..... .|| ..|...+...|+..+ ..+.|..++....+
T Consensus 331 ~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~ 408 (1018)
T KOG2002|consen 331 MESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE 408 (1018)
T ss_pred HHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh
Confidence 555432 1 233444556666666666666666666553 233 334444444444443 34445555555444
Q ss_pred cCCCCchhHHHHHHHHHHhcCCH------HHHHHHHhc-CCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCC
Q 006388 203 NDHKDNVFVGSALVDMYCKCKSI------KYAESVFRT-MAWKNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRN---GIE 272 (647)
Q Consensus 203 ~g~~~~~~~~~~li~~y~~~g~~------~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~ 272 (647)
.- +.|...|-.+..+|-...-+ ..|..++.. +....+...|.+...+...|++++|...|.+.... -..
T Consensus 409 ~~-~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n 487 (1018)
T KOG2002|consen 409 QT-PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVAN 487 (1018)
T ss_pred cc-cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcC
Confidence 33 44555555555555443322 222222222 12234556677777777888888888888777654 123
Q ss_pred CCH-----H-HHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhh
Q 006388 273 PDD-----F-TLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMN---VRDEVS 343 (647)
Q Consensus 273 p~~-----~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~ 343 (647)
+|. . +--.+....-..++.+.|.++|..+.+.. +.-+..|-.|+-+.-..+...+|...++... ..++..
T Consensus 488 ~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~a 566 (1018)
T KOG2002|consen 488 KDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNA 566 (1018)
T ss_pred ccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHH
Confidence 333 1 22223334455667888888888877763 2222333333333333456778888887765 457788
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhc------------CCcHHHHHHHHHHHHHhcCCCc
Q 006388 344 WTALVSGYAKFGKANETIDLFEKMLSH-GLKPDEVTLIGVLSACSR------------AGLVEKGRHYFEIMVKEYGIRP 410 (647)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~~~~~~~~~p 410 (647)
|+.+...|.....+..|.+-|....+. ...+|..+..+|.+.|.. .+..++|+++|....+ .-+.
T Consensus 567 rsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpk 644 (1018)
T KOG2002|consen 567 RSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPK 644 (1018)
T ss_pred HHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcc
Confidence 888888888888888888877766543 234677777777665542 2356788888888875 3455
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHhcc-C-CCCchhHHHHHH
Q 006388 411 IHDHYTCMIDILSRAGRLEEAKSFINKMP--FPPDAIGWATLLSSCRIHGNVEIGKWAAESLLEL-D-PYNPASYVLLSS 486 (647)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-p~~~~~~~~l~~ 486 (647)
+...-|-+.-.++..|++.+|..+|.+.. ......+|-.+...|...|++..|+++|+..++. . .+++.....|+.
T Consensus 645 N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lar 724 (1018)
T KOG2002|consen 645 NMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLAR 724 (1018)
T ss_pred hhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 77778888999999999999999999882 2235678999999999999999999999997764 3 347788899999
Q ss_pred hhhhCCChhHHHHHHHHHHhC
Q 006388 487 IYASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 487 ~~~~~g~~~~a~~~~~~m~~~ 507 (647)
++...|+|.+|.+........
T Consensus 725 a~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 725 AWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHhhhHHHHHHHHHHHHHh
Confidence 999999999999998877654
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.77 E-value=2.1e-14 Score=149.46 Aligned_cols=475 Identities=12% Similarity=0.093 Sum_probs=340.8
Q ss_pred hhHHHHHHHHHHHCCCCCCCcchHHHHHHHHh--CCCChHHHHHHHHHHHHhCC--CCchhhHHHHHHHHHhcCChHHHH
Q 006388 22 VNDAVKVYNLMLKDGLGNLSRITFSTMLIMSS--SRRCVDLGRQIHGHILKFGF--GSYVFVGSPLVDMYAKLGLIYDAK 97 (647)
Q Consensus 22 ~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~ 97 (647)
++.|...|....+.. |+|. ...|.+||. ..+++..|..+|..++.... .+|+.+. +-.++.++|+.+.|+
T Consensus 146 ~~~A~a~F~~Vl~~s--p~Ni--l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~ 219 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS--PDNI--LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIG--IGHCFWKLGMSEKAL 219 (1018)
T ss_pred HHHHHHHHHHHHhhC--Ccch--HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccch--hhhHHHhccchhhHH
Confidence 589999999999876 5554 344666664 67899999999999777643 5665543 346778999999999
Q ss_pred HHhccCCCCCchHHHHHHHHHH------hcCChHHHHHHhhcCC---CCCeehHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 006388 98 RGFDELPEKNIVMYNTMITGLL------RRGLVEESRRLFRGMK---DKDSISWTTMITGLMQNGLEREAIDLFREMRLE 168 (647)
Q Consensus 98 ~~~~~~~~~~~~~~~~li~~~~------~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 168 (647)
..|.+..+-|+..-++++.... ....+..+..++...- ..|++..+.|...|.-.|+++.++.+...+...
T Consensus 220 ~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 220 LAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 9999988755544444433222 2334445555554432 248899999999999999999999999998764
Q ss_pred CCC--CChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHH
Q 006388 169 GLA--MDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMAWK---NVVSW 243 (647)
Q Consensus 169 g~~--pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~ 243 (647)
-.. .-...|-.+.+++-..|+++.|...|-+..+..-...+..+--|..+|.+.|+++.+...|+.+... +..+.
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm 379 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETM 379 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHH
Confidence 311 1233577888999999999999999988887643322444557899999999999999999998643 45677
Q ss_pred HHHHHHHHhcC----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH----HhCCCcchhHHHH
Q 006388 244 TAMLVGYGQNG----CSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSL----VTGLISFITVSNA 315 (647)
Q Consensus 244 ~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~ 315 (647)
..|...|+..+ ..+.|..++.+..+.- +-|...|..+-..+-. +++......+..+. ..+-.+.+.+.|.
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNN 457 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNN 457 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 77777777775 4466666666665542 3355566555555543 44444455555443 4455677889999
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCC-------Chh-------hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHH
Q 006388 316 LVTFYGKCGNIEDSHRLFNEMNVR-------DEV-------SWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEV-TLI 380 (647)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~~~~~-------d~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~ 380 (647)
+...+...|++.+|...|...... |.. -|| +...+-..++.+.|.+.|+..... .|+-+ .|.
T Consensus 458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN-larl~E~l~~~~~A~e~Yk~Ilke--hp~YId~yl 534 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN-LARLLEELHDTEVAEEMYKSILKE--HPGYIDAYL 534 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH-HHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHH
Confidence 999999999999999999876522 221 233 445566678899999999999885 67765 444
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHH----hCCCCCChhhHHHHHHHHHh
Q 006388 381 GVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFIN----KMPFPPDAIGWATLLSSCRI 456 (647)
Q Consensus 381 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~----~~~~~p~~~~~~~ll~~~~~ 456 (647)
.++......+...+|...+..... ....++..++.+.+.+.+...+.-|.+-|. +....+|+.+.-+|++.|.+
T Consensus 535 Rl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~ 612 (1018)
T KOG2002|consen 535 RLGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQ 612 (1018)
T ss_pred HhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHH
Confidence 444333345778889888888876 445566677778888888888877777444 33344777777788876652
Q ss_pred ------------cCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhCCC
Q 006388 457 ------------HGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREKGV 509 (647)
Q Consensus 457 ------------~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 509 (647)
.+..+.|++.|.+++..+|.|..+-+.++-+++..|++.+|..+|.+..+...
T Consensus 613 ~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 613 ALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred HhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 23467788888888889999888888888999999999999999999887655
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.77 E-value=1.4e-14 Score=157.60 Aligned_cols=419 Identities=9% Similarity=-0.010 Sum_probs=307.6
Q ss_pred HHHHhcCChHHHHHHhccCCC--CCch-HHHHHHHHHHhcCChHHHHHHhhcCCCCCeehHHH-H--HHHHHhCCChhHH
Q 006388 85 DMYAKLGLIYDAKRGFDELPE--KNIV-MYNTMITGLLRRGLVEESRRLFRGMKDKDSISWTT-M--ITGLMQNGLEREA 158 (647)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-l--i~~~~~~g~~~~A 158 (647)
-...+.|+++.|...|++..+ |+.. ....++..+...|+.++|+..+++...|+...+.. + ...|...|++++|
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 345699999999999999986 4321 23388899999999999999999998775444443 3 4477788999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC
Q 006388 159 IDLFREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMAWK 238 (647)
Q Consensus 159 ~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~ 238 (647)
+++|+++.+.... +...+..++..+...++.++|.+.+..+.+. .|+...+..++..+...++..+|.+.++++.+.
T Consensus 122 iely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 9999999886432 3455667778888999999999999998876 445555555555665566776799999998753
Q ss_pred ---ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH------HHHHHH-Hh----ccCCh---HHHHHHHHHH
Q 006388 239 ---NVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTL------GSVISS-CA----NLASL---EEGTQFHGRS 301 (647)
Q Consensus 239 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~------~~ll~a-~~----~~~~~---~~a~~~~~~~ 301 (647)
+...+..+..++.+.|-...|+++..+-... +.|...-. ...+.. .. ....+ +.|..-++.+
T Consensus 199 ~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 199 APTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 5667788889999999999999876653211 11111111 111110 00 11222 3333344444
Q ss_pred HHh-C-CCcchhH-HHH---HHHHHHhcCCHHHHHHHHhhcCCC----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 006388 302 LVT-G-LISFITV-SNA---LVTFYGKCGNIEDSHRLFNEMNVR----DEVSWTALVSGYAKFGKANETIDLFEKMLSHG 371 (647)
Q Consensus 302 ~~~-~-~~~~~~~-~~~---li~~~~~~g~~~~A~~~~~~~~~~----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 371 (647)
... + .++.... ..+ -+-++.+.|+..++.+.|+.+... ...+-.++..+|...+++++|+.+|++.....
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 432 1 1222222 222 345567889999999999999833 33456678899999999999999999997643
Q ss_pred -----CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC----------CCcC---hHHHHHHHHHHHHcCCHHHHHH
Q 006388 372 -----LKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYG----------IRPI---HDHYTCMIDILSRAGRLEEAKS 433 (647)
Q Consensus 372 -----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~ 433 (647)
..++......|.-++..++++++|..+++.+.+... -.|+ ...+..++..+...|++.+|++
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 122333457788999999999999999999986311 0122 2445567788899999999999
Q ss_pred HHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhC
Q 006388 434 FINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 434 ~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 507 (647)
.++++ ...| |...+..+...+...|.+.+|+..++.+..++|++..+...++.++...|+|++|..+.+.+.+.
T Consensus 438 ~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 438 KLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 99998 3344 68889999999999999999999999999999999999999999999999999999999887664
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=1.1e-13 Score=131.12 Aligned_cols=415 Identities=16% Similarity=0.156 Sum_probs=268.1
Q ss_pred chHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHHHHHH--HHhcCChHHH-HHHhccCCC---CCchHHHHHHH
Q 006388 43 ITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSPLVDM--YAKLGLIYDA-KRGFDELPE---KNIVMYNTMIT 116 (647)
Q Consensus 43 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--~~~~g~~~~A-~~~~~~~~~---~~~~~~~~li~ 116 (647)
.+=+.|++. ...|.++.+.-+++.|...|.+.+..+-..|+.. |....++.-| .+-|-.|.. ....+|
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW----- 190 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW----- 190 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc-----
Confidence 455555553 4456777788888888888877666666655543 3333333322 234444442 334444
Q ss_pred HHHhcCChHHHHHHhhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHH
Q 006388 117 GLLRRGLVEESRRLFRGMKDKDSISWTTMITGLMQNGLEREAIDLFREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQI 196 (647)
Q Consensus 117 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~ 196 (647)
+.|.+.+ ++-+...+...++..||.++++--..+.|.+++++-.....+.+..+||.+|.+-+ +..++++
T Consensus 191 ---K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~L 260 (625)
T KOG4422|consen 191 ---KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKL 260 (625)
T ss_pred ---ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHH
Confidence 3454444 44444445667888888888888888888888888888778888888888887654 3334778
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHH----hcCC----CCChhHHHHHHHHHHhcCChhH-HHHHHHHHH
Q 006388 197 HAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVF----RTMA----WKNVVSWTAMLVGYGQNGCSEE-AVKIFCNMQ 267 (647)
Q Consensus 197 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~----~~~~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~ 267 (647)
..+|+...+.||..++|+++.+..+.|+++.|++.+ .+|+ +|...+|..+|..+.+.++..+ |..++.++.
T Consensus 261 v~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~ 340 (625)
T KOG4422|consen 261 VAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQ 340 (625)
T ss_pred HHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHH
Confidence 888888888888888888888888888887766544 3443 4677788888888888777644 455555554
Q ss_pred HC----CCCC----CHHHHHHHHHHHhccCChHHHHHHHHHHHHhC----CCcc---hhHHHHHHHHHHhcCCHHHHHHH
Q 006388 268 RN----GIEP----DDFTLGSVISSCANLASLEEGTQFHGRSLVTG----LISF---ITVSNALVTFYGKCGNIEDSHRL 332 (647)
Q Consensus 268 ~~----g~~p----~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~ 332 (647)
.. .++| |..-|...+..|.+..+.+.|.+++..+.... +.++ ..-|..+....+....++.-...
T Consensus 341 N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~ 420 (625)
T KOG4422|consen 341 NSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKW 420 (625)
T ss_pred HhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 2333 34567788999999999999999988775431 2222 34456677888888889999999
Q ss_pred HhhcCC----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC-c---H-----H-----H
Q 006388 333 FNEMNV----RDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAG-L---V-----E-----K 394 (647)
Q Consensus 333 ~~~~~~----~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g-~---~-----~-----~ 394 (647)
++.|.. |+..+-..++.+....|.++-.-+++..|+..|..-+...-.-++.-+++.. . . . -
T Consensus 421 Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~ 500 (625)
T KOG4422|consen 421 YEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKC 500 (625)
T ss_pred HHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHH
Confidence 998873 4666667777888888888888888888888775555444444444443332 1 0 0 0
Q ss_pred HHHHHHHH----HHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCChhhHHHHHHHHHhcCChhHH
Q 006388 395 GRHYFEIM----VKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-------PFPPDAIGWATLLSSCRIHGNVEIG 463 (647)
Q Consensus 395 a~~~~~~~----~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a 463 (647)
|..+++.. ++....+......++..-++.|.|..++|.+++.-. +..|......-|+.+-.+.++...|
T Consensus 501 aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA 580 (625)
T KOG4422|consen 501 AADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQA 580 (625)
T ss_pred HHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHH
Confidence 11111110 001123344556778888888888888888887654 3334433344555555566666666
Q ss_pred HHHHHHHhcc
Q 006388 464 KWAAESLLEL 473 (647)
Q Consensus 464 ~~~~~~~~~~ 473 (647)
..+++-+.+.
T Consensus 581 ~~~lQ~a~~~ 590 (625)
T KOG4422|consen 581 IEVLQLASAF 590 (625)
T ss_pred HHHHHHHHHc
Confidence 6666665443
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.71 E-value=4.8e-14 Score=134.36 Aligned_cols=462 Identities=13% Similarity=0.070 Sum_probs=303.1
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCCcch-HHHHHHHHhCCCChHHHHHHHHHHHHhCCCCch----hhHHHHHHH
Q 006388 12 LISGHASHGSVNDAVKVYNLMLKDGLGNLSRIT-FSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYV----FVGSPLVDM 86 (647)
Q Consensus 12 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~ 86 (647)
|.+-|..+..+.+|+..|+-..+... -||.-. --.+...+.+.+++.+|.+.++..+..-...+. .+.+.+-..
T Consensus 207 laqqy~~ndm~~ealntyeiivknkm-f~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKM-FPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccc-cCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 45667778888899999988887766 455432 233445567777888888888887766433332 234444445
Q ss_pred HHhcCChHHHHHHhccCCC--CCchHHHHHHHHHHhcCChHHHHHHhhcCCC----------------CCeehHHHHH--
Q 006388 87 YAKLGLIYDAKRGFDELPE--KNIVMYNTMITGLLRRGLVEESRRLFRGMKD----------------KDSISWTTMI-- 146 (647)
Q Consensus 87 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------------~~~~~~~~li-- 146 (647)
+.+.|++++|..-|+...+ ||..+--.|+-.+.--|+-++..+.|.+|.. |+....|.-|
T Consensus 286 fiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~n 365 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKN 365 (840)
T ss_pred EEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhh
Confidence 7788999999999887764 6766655556566667888888888887753 1111122111
Q ss_pred ---HHHHhCC--ChhHHHHHHHHHHHCCCCCChhh-HHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 006388 147 ---TGLMQNG--LEREAIDLFREMRLEGLAMDQFT-FGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYC 220 (647)
Q Consensus 147 ---~~~~~~g--~~~~A~~~~~~m~~~g~~pd~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 220 (647)
+-.-+.+ +.++++-.-.++..--+.||-.. +...+...-.....+. ..+.. -.-..-|.
T Consensus 366 d~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~l-------------a~dle--i~ka~~~l 430 (840)
T KOG2003|consen 366 DHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAEL-------------AIDLE--INKAGELL 430 (840)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhh-------------hhhhh--hhHHHHHH
Confidence 1111111 11222222222222122222110 1111111110001111 11111 11233578
Q ss_pred hcCCHHHHHHHHhcCCCCChhHH----HHHHH-HHHh-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 006388 221 KCKSIKYAESVFRTMAWKNVVSW----TAMLV-GYGQ-NGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEG 294 (647)
Q Consensus 221 ~~g~~~~A~~~~~~~~~~~~~~~----~~li~-~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 294 (647)
+.|+++.|.+++.-...+|..+- |.|-. -|.+ ..++.+|.+.-+...... +-+......-.......|++++|
T Consensus 431 k~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka 509 (840)
T KOG2003|consen 431 KNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKA 509 (840)
T ss_pred hccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHH
Confidence 99999999998888776654332 22222 2223 345666766665554332 22333333333334457899999
Q ss_pred HHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 006388 295 TQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMN---VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHG 371 (647)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 371 (647)
...+.+.+..+-.-....|| +.-.+-+.|++++|+..|-++. ..++...-.+...|-...+...|++++.+....
T Consensus 510 ~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl- 587 (840)
T KOG2003|consen 510 AEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL- 587 (840)
T ss_pred HHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-
Confidence 99999998776444445555 3445778899999999998765 557777778888899999999999999777653
Q ss_pred CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCChhhHHHH
Q 006388 372 LKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPPDAIGWATL 450 (647)
Q Consensus 372 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 450 (647)
++.|...+..|...|-+.|+-.+|.+.+-.--+ -++.+.++..-|..-|....-+++|+.+|++. -++|+.+-|..+
T Consensus 588 ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlm 665 (840)
T KOG2003|consen 588 IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLM 665 (840)
T ss_pred CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHH
Confidence 444556888888999999999999887654322 35567889888999999999999999999998 478999999999
Q ss_pred HHHHH-hcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCCh
Q 006388 451 LSSCR-IHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKW 494 (647)
Q Consensus 451 l~~~~-~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 494 (647)
+.+|. +.|++..|..+++.....-|.+...+..|..++...|.-
T Consensus 666 iasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 99884 679999999999999999999999999999998888753
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.66 E-value=7.9e-12 Score=129.80 Aligned_cols=497 Identities=13% Similarity=0.106 Sum_probs=300.3
Q ss_pred cccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHHHHH
Q 006388 6 GVSWNLLISGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSPLVD 85 (647)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 85 (647)
...|-+|...|-+.|+.++++..+-..-... |.|...|..+..-..+.|++++|.-++.++++.. +++....---..
T Consensus 173 ~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~--p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~ 249 (895)
T KOG2076|consen 173 PIAYYTLGEIYEQRGDIEKALNFWLLAAHLN--PKDYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSS 249 (895)
T ss_pred hhhHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHH
Confidence 3445555555555555555554443333332 3444455555555555555555555555555554 233333333445
Q ss_pred HHHhcCChHHHHHHhccCCCCCc----h----HHHHHHHHHHhcCChHHHHHHhhcCCC--C---CeehHHHHHHHHHhC
Q 006388 86 MYAKLGLIYDAKRGFDELPEKNI----V----MYNTMITGLLRRGLVEESRRLFRGMKD--K---DSISWTTMITGLMQN 152 (647)
Q Consensus 86 ~~~~~g~~~~A~~~~~~~~~~~~----~----~~~~li~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~ 152 (647)
+|-+.|+...|..-|.++.+.+. . +--..+..+...++-+.|.+.++.... . +...++.++..|.+.
T Consensus 250 L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~ 329 (895)
T KOG2076|consen 250 LYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKN 329 (895)
T ss_pred HHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHh
Confidence 55555666665555554443111 1 111123444455555666666655543 1 345678888888888
Q ss_pred CChhHHHHHHHHHHHCCCCC----------------------ChhhHH----HHHHHHhcCCChHHHHHHHHHHHHcC--
Q 006388 153 GLEREAIDLFREMRLEGLAM----------------------DQFTFG----SVLTACGGLLALEEGKQIHAFIIRND-- 204 (647)
Q Consensus 153 g~~~~A~~~~~~m~~~g~~p----------------------d~~t~~----~ll~~~~~~~~~~~a~~~~~~~~~~g-- 204 (647)
..++.|......+......+ +...|. -+.-++.+....+....+...+.+..
T Consensus 330 ~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~ 409 (895)
T KOG2076|consen 330 KQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVW 409 (895)
T ss_pred HHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCC
Confidence 88888888888877621111 111111 12223345555555666666666666
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC----CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHH
Q 006388 205 HKDNVFVGSALVDMYCKCKSIKYAESVFRTMAW----KNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDD-FTLG 279 (647)
Q Consensus 205 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~ 279 (647)
+..+...+.-+.++|...|++.+|.++|..+.. .+...|--+..+|...|..++|.+.|...... .|+. ..-.
T Consensus 410 ~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri 487 (895)
T KOG2076|consen 410 VSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARI 487 (895)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhh
Confidence 344567788899999999999999999998874 36778999999999999999999999999875 5554 3444
Q ss_pred HHHHHHhccCChHHHHHHHHHHH--------HhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC--------------
Q 006388 280 SVISSCANLASLEEGTQFHGRSL--------VTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMN-------------- 337 (647)
Q Consensus 280 ~ll~a~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------------- 337 (647)
.+-..+.+.|+.++|.+.+..+. ..+..|+..+.-...+.|.+.|+.++=..+-..|.
T Consensus 488 ~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~ 567 (895)
T KOG2076|consen 488 TLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNK 567 (895)
T ss_pred hHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 55566778999999999988853 23345555565666677777777655322211110
Q ss_pred --------------------------CC-------------------------ChhhH----HHHHHHHHHcCChHHHHH
Q 006388 338 --------------------------VR-------------------------DEVSW----TALVSGYAKFGKANETID 362 (647)
Q Consensus 338 --------------------------~~-------------------------d~~~~----~~li~~~~~~g~~~~A~~ 362 (647)
.+ ...-| .-++.++++.+++++|+.
T Consensus 568 k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~ 647 (895)
T KOG2076|consen 568 KKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALS 647 (895)
T ss_pred HHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 00 01112 345667889999999999
Q ss_pred HHHHHHHCCC--CCCHH--HH-HHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcC---hHHHHHHHHHH------------
Q 006388 363 LFEKMLSHGL--KPDEV--TL-IGVLSACSRAGLVEKGRHYFEIMVKEYGIRPI---HDHYTCMIDIL------------ 422 (647)
Q Consensus 363 ~~~~m~~~g~--~p~~~--t~-~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~------------ 422 (647)
+...+..... .++.. .+ ...+.++...+++..|...++.|...++...+ ...|++.....
T Consensus 648 vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~ 727 (895)
T KOG2076|consen 648 VVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRL 727 (895)
T ss_pred HHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988876532 22221 22 33456777889999999999999876443322 23344222222
Q ss_pred -----------------------HHcCCHHHHHHHHHhC-CCCCChhhHHHHHHH-H----------HhcCChhHHHHHH
Q 006388 423 -----------------------SRAGRLEEAKSFINKM-PFPPDAIGWATLLSS-C----------RIHGNVEIGKWAA 467 (647)
Q Consensus 423 -----------------------~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~-~----------~~~~~~~~a~~~~ 467 (647)
..++.+.-|+..+-+. ...||....+.+++. + .+|-..-++..++
T Consensus 728 ~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL 807 (895)
T KOG2076|consen 728 IMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFL 807 (895)
T ss_pred HHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 2234566666554443 233453333333322 1 1233455667777
Q ss_pred HHHhccCCC--CchhHHHHHHhhhhCCChhHHHHHHHHHHhC
Q 006388 468 ESLLELDPY--NPASYVLLSSIYASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 468 ~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 507 (647)
.+..++... .-.++.+++.+|-..|-..-|..++++..+-
T Consensus 808 ~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~ 849 (895)
T KOG2076|consen 808 KRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEV 849 (895)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCC
Confidence 666665433 4578889999999999999999999998763
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.63 E-value=7e-11 Score=118.21 Aligned_cols=490 Identities=10% Similarity=0.021 Sum_probs=382.1
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHH
Q 006388 16 HASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSPLVDMYAKLGLIYD 95 (647)
Q Consensus 16 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 95 (647)
-+...+.++|.-++.+..+.- |.+...| -++++...++.|+.++....+. ++.+..++.+-...--.+|..+.
T Consensus 386 AVelE~~~darilL~rAvecc--p~s~dLw----lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~m 458 (913)
T KOG0495|consen 386 AVELEEPEDARILLERAVECC--PQSMDLW----LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDM 458 (913)
T ss_pred HHhccChHHHHHHHHHHHHhc--cchHHHH----HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHH
Confidence 344567778888888888763 4343433 4556667788899998888665 57778888877777778888888
Q ss_pred HHHHhccCCC--------CCchHHHHHHHHHHhcCChHHHHHHhhcCCC------CCeehHHHHHHHHHhCCChhHHHHH
Q 006388 96 AKRGFDELPE--------KNIVMYNTMITGLLRRGLVEESRRLFRGMKD------KDSISWTTMITGLMQNGLEREAIDL 161 (647)
Q Consensus 96 A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~ 161 (647)
..++.++-.. -+...|-.-...+-+.|..-.+..+...... .--.+|+.-...|.+.+.++-|..+
T Consensus 459 v~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAV 538 (913)
T KOG0495|consen 459 VEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAV 538 (913)
T ss_pred HHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHH
Confidence 8887765431 2445566666666677777777766665442 1345899999999999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---
Q 006388 162 FREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMAWK--- 238 (647)
Q Consensus 162 ~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--- 238 (647)
|....+. .+-+...|......--..|..+.-..+++.++..- +.....|.....-+-..|++..|+.++...-+.
T Consensus 539 ya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn 616 (913)
T KOG0495|consen 539 YAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN 616 (913)
T ss_pred HHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC
Confidence 9988874 22345566666666667788999999999888764 445556666777888889999999988876542
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 006388 239 NVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVT 318 (647)
Q Consensus 239 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 318 (647)
+...|-+-+..-..+.++++|..+|.+.... .|+...|.--+..---.+..++|.+++++.++. ++.-...|-.+.+
T Consensus 617 seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQ 693 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQ 693 (913)
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhH
Confidence 5568888899999999999999999998875 567766665555555678899999999888876 3556678889999
Q ss_pred HHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHH
Q 006388 319 FYGKCGNIEDSHRLFNEMNV--R-DEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKG 395 (647)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 395 (647)
.+-+.++++.|.+.|..-.+ | .+-.|-.+...--+.|+.-.|..+|++....+ +-|...|...+..-.+.|+.+.|
T Consensus 694 i~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a 772 (913)
T KOG0495|consen 694 IEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQA 772 (913)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHH
Confidence 99999999999999987653 2 45678888887788899999999999988764 34566888999999999999999
Q ss_pred HHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 006388 396 RHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKMPFPPDAIGWATLLSSCRIHGNVEIGKWAAESLLELDP 475 (647)
Q Consensus 396 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 475 (647)
..+.....+ .++.+...|..-|.+..+.++-..+.+.+++.. -|+.+.-++...+-...+++.|..-|+++.+.+|
T Consensus 773 ~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 773 ELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred HHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 999988876 456677888888988888888888888888875 3556666777778888899999999999999999
Q ss_pred CCchhHHHHHHhhhhCCChhHHHHHHHHHHhCCCccCCCcceEeEcCeE
Q 006388 476 YNPASYVLLSSIYASKGKWDHVSQLRRTMREKGVRKDPGCSWIKYKSRV 524 (647)
Q Consensus 476 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~ 524 (647)
++..+|..+...+...|.-++-.+++.+... ..|..|..|..+...+
T Consensus 849 d~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~hG~~W~avSK~i 895 (913)
T KOG0495|consen 849 DNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTHGELWQAVSKDI 895 (913)
T ss_pred ccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCCCcHHHHHhhhH
Confidence 9999999999999999999999999998776 3466777888776544
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=4.3e-12 Score=120.61 Aligned_cols=361 Identities=14% Similarity=0.148 Sum_probs=193.2
Q ss_pred CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHHH
Q 006388 4 HDGVSWNLLISGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSPL 83 (647)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 83 (647)
++..++..||.+.++....+.|.++|++.....+ +.+..+||.++.+-+ +..++.+...|+.....||.+|+|++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~-kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKG-KVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhh-eeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHH
Confidence 3456788888888888888888888888777665 777788888776654 33347777778777778888888888
Q ss_pred HHHHHhcCChHHHHHHhccCCCCCchHHHHHHHHHHhcCChHHHHHHhhcCC----CCCeehHHHHHHHHHhCCChhH-H
Q 006388 84 VDMYAKLGLIYDAKRGFDELPEKNIVMYNTMITGLLRRGLVEESRRLFRGMK----DKDSISWTTMITGLMQNGLERE-A 158 (647)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~-A 158 (647)
+...++.|+++.|++.+-++. .+|. +|...+|..+|..+.+.+++.+ |
T Consensus 280 L~c~akfg~F~~ar~aalqil---------------------------~EmKeiGVePsLsSyh~iik~f~re~dp~k~a 332 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQIL---------------------------GEMKEIGVEPSLSSYHLIIKNFKRESDPQKVA 332 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHH---------------------------HHHHHhCCCcchhhHHHHHHHhcccCCchhhh
Confidence 888888887777665432211 1111 3455555555555555554432 3
Q ss_pred HHHHHHHHH----CCCCC----ChhhHHHHHHHHhcCCChHHHHHHHHHHHHcC----CCCchhHHHHHHHHHHhcCCHH
Q 006388 159 IDLFREMRL----EGLAM----DQFTFGSVLTACGGLLALEEGKQIHAFIIRND----HKDNVFVGSALVDMYCKCKSIK 226 (647)
Q Consensus 159 ~~~~~~m~~----~g~~p----d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g----~~~~~~~~~~li~~y~~~g~~~ 226 (647)
..++.+... .-++| |...|...+..|.+..+.+.|.+++..+.... +.|+.
T Consensus 333 s~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~----------------- 395 (625)
T KOG4422|consen 333 SSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQ----------------- 395 (625)
T ss_pred HHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHH-----------------
Confidence 333333332 11222 23334555555555555555555554433210 01110
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCC
Q 006388 227 YAESVFRTMAWKNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGL 306 (647)
Q Consensus 227 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 306 (647)
....-|..+....++....+.-+..|+.|.-.-+-|+..+...++.|....+.++-..+++..++..|.
T Consensus 396 -----------~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 396 -----------HRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 011223445555566666677777777777666677777777777777777777777777777776664
Q ss_pred CcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHH--cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006388 307 ISFITVSNALVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAK--FGKANETIDLFEKMLSHGLKPDEVTLIGVLS 384 (647)
Q Consensus 307 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 384 (647)
........-++..+++.. ..|+...-..+-...++ ..-.+.....-.+|.+..+.|. ..+.++.
T Consensus 465 t~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t--~l~~ia~ 530 (625)
T KOG4422|consen 465 TFRSDLREEILMLLARDK------------LHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPAT--SLNCIAI 530 (625)
T ss_pred hhhHHHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChh--HHHHHHH
Confidence 333333222222222211 01111100111111111 0011111222233444333333 3344444
Q ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCcChHHHH---HHHHHHHHcCCHHHHHHHHHhC
Q 006388 385 ACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYT---CMIDILSRAGRLEEAKSFINKM 438 (647)
Q Consensus 385 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~---~li~~~~~~g~~~~A~~~~~~~ 438 (647)
.+.+.|..++|.++|....+...-.|-....+ -+++.-.+......|...++-|
T Consensus 531 Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 531 LLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 45666777777777776654433334433444 3344445566666666666655
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.61 E-value=3.9e-10 Score=113.02 Aligned_cols=458 Identities=12% Similarity=0.052 Sum_probs=258.7
Q ss_pred HHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCC
Q 006388 26 VKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSPLVDMYAKLGLIYDAKRGFDELPE 105 (647)
Q Consensus 26 ~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 105 (647)
.+++++.++.- |.+...|- +.....+.+.|+.++.+.++.= +.+.. |..+|++..-++.|.++++...+
T Consensus 366 ~RVlRKALe~i--P~sv~LWK----aAVelE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe 434 (913)
T KOG0495|consen 366 KRVLRKALEHI--PRSVRLWK----AAVELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKARE 434 (913)
T ss_pred HHHHHHHHHhC--CchHHHHH----HHHhccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555542 33333332 3334444555666666666542 22323 33344455556666666665543
Q ss_pred ---CCchHHHHHHHHHHhcCChHHHHHHhhcCCC--------CCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-
Q 006388 106 ---KNIVMYNTMITGLLRRGLVEESRRLFRGMKD--------KDSISWTTMITGLMQNGLEREAIDLFREMRLEGLAMD- 173 (647)
Q Consensus 106 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd- 173 (647)
.+...|.+-...--..|..+...++.++-.. -+...|-.=...+-..|..-.+..+......-|+.-.
T Consensus 435 ~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed 514 (913)
T KOG0495|consen 435 IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEED 514 (913)
T ss_pred hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccch
Confidence 3555666555555566666666666554321 1333444444455555555555555555555554321
Q ss_pred -hhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHH
Q 006388 174 -QFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMAW---KNVVSWTAMLVG 249 (647)
Q Consensus 174 -~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 249 (647)
..|+..-...|.+.+.++.++.+|...++- ++.+..+|...+..--..|..+.-..+|++... +..+.|-....-
T Consensus 515 ~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake 593 (913)
T KOG0495|consen 515 RKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKE 593 (913)
T ss_pred hHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHH
Confidence 235666666677777777777777666654 244555666666555556666666666665542 244556666666
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHH
Q 006388 250 YGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDS 329 (647)
Q Consensus 250 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 329 (647)
+-..|+...|..++.+..+.. +-+...+...+..-.....++.|+.++...... .++..+|.--+...--.++.++|
T Consensus 594 ~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHH
Confidence 666677777777776666553 113445555566666666677777777666553 35555665555555556667777
Q ss_pred HHHHhhcCCC--C-hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 006388 330 HRLFNEMNVR--D-EVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEV-TLIGVLSACSRAGLVEKGRHYFEIMVKE 405 (647)
Q Consensus 330 ~~~~~~~~~~--d-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 405 (647)
.+++++..+. + ...|-.+.+.+-+.++.+.|.+.|..-.+ .-|+.. .|..+...=.+.|.+-.|+.+++....
T Consensus 671 ~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarl- 747 (913)
T KOG0495|consen 671 LRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL- 747 (913)
T ss_pred HHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh-
Confidence 7776665522 2 33566666666666666666666655443 245444 444444444556666777777766643
Q ss_pred cCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHH
Q 006388 406 YGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM--PFPPDAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVL 483 (647)
Q Consensus 406 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 483 (647)
..+.+...|-..|.+-.|.|..+.|..++.++ .++.+...|..-|....+.++-..+..++++ -..|+.....
T Consensus 748 -kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkk----ce~dphVlla 822 (913)
T KOG0495|consen 748 -KNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKK----CEHDPHVLLA 822 (913)
T ss_pred -cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHh----ccCCchhHHH
Confidence 33445566666677777777777776666555 2333455666666555555543333333332 2234556666
Q ss_pred HHHhhhhCCChhHHHHHHHHHHh
Q 006388 484 LSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 484 l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
.+..+....+++.|++.|.+..+
T Consensus 823 ia~lfw~e~k~~kar~Wf~Ravk 845 (913)
T KOG0495|consen 823 IAKLFWSEKKIEKAREWFERAVK 845 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 66666677777777777766655
No 34
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=1e-11 Score=120.16 Aligned_cols=186 Identities=19% Similarity=0.227 Sum_probs=134.8
Q ss_pred HHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCCc
Q 006388 316 LVTFYGKCGNIEDSHRLFNEMN---VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEV-TLIGVLSACSRAGL 391 (647)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~ 391 (647)
+..+|....+.++-.+.|+... ..|+.+|..-...+.-.+++++|..=|++.+. +.|+.. .|..+--+.-+.+.
T Consensus 366 ~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k 443 (606)
T KOG0547|consen 366 RAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHK 443 (606)
T ss_pred HHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHH
Confidence 3344555555555555555443 22455555555556666777888888887776 355543 66666666677888
Q ss_pred HHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---------hhhHHHHHHHHHhcCChh
Q 006388 392 VEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPPD---------AIGWATLLSSCRIHGNVE 461 (647)
Q Consensus 392 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---------~~~~~~ll~~~~~~~~~~ 461 (647)
++++...|++.+++ ++-.++.|+.....+...++++.|.+.|+.. .++|+ +.+-.+++-.-- .+++.
T Consensus 444 ~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~ 520 (606)
T KOG0547|consen 444 IAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW-KEDIN 520 (606)
T ss_pred HHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch-hhhHH
Confidence 89999999988874 4556688888899999999999999999876 33443 222223332222 38999
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 462 IGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 462 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
.|+.+++++++++|....+|..|+.+-.+.|+.++|.++|++-..
T Consensus 521 ~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 521 QAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999997643
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.56 E-value=1.3e-14 Score=142.11 Aligned_cols=253 Identities=18% Similarity=0.195 Sum_probs=111.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCH
Q 006388 248 VGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVI-SSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNI 326 (647)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 326 (647)
..+.+.|++++|++++.+......+|+...|-.++ ..+-..++.+.|.+.++.+...+. .++..+..++.. ...+++
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-cccccc
Confidence 33444455555555553332221123333333222 223334555555555555554432 234445555555 567777
Q ss_pred HHHHHHHhhcC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 006388 327 EDSHRLFNEMN--VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHG-LKPDEVTLIGVLSACSRAGLVEKGRHYFEIMV 403 (647)
Q Consensus 327 ~~A~~~~~~~~--~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 403 (647)
++|.+++...- .++...+..++..+.+.++++++.+++++..... ..++...|..+...+.+.|+.++|.+.++...
T Consensus 94 ~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 173 (280)
T PF13429_consen 94 EEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL 173 (280)
T ss_dssp ------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777776653 3466677788888889999999999999877543 34566677788888899999999999999988
Q ss_pred HhcCCCc-ChHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchh
Q 006388 404 KEYGIRP-IHDHYTCMIDILSRAGRLEEAKSFINKMP--FPPDAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPAS 480 (647)
Q Consensus 404 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 480 (647)
+. .| +......++..+...|+.+++.++++... .+.|+..|..+..++...|+.++|...++++.+.+|+|+..
T Consensus 174 ~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~ 250 (280)
T PF13429_consen 174 EL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLW 250 (280)
T ss_dssp HH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred Hc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccc
Confidence 64 45 46778889999999999999888887661 23567788999999999999999999999999999999999
Q ss_pred HHHHHHhhhhCCChhHHHHHHHHHH
Q 006388 481 YVLLSSIYASKGKWDHVSQLRRTMR 505 (647)
Q Consensus 481 ~~~l~~~~~~~g~~~~a~~~~~~m~ 505 (647)
...++.++...|+.++|.+++++..
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccc
Confidence 9999999999999999999988764
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.56 E-value=1.6e-11 Score=127.62 Aligned_cols=326 Identities=16% Similarity=0.139 Sum_probs=182.9
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc---CCCCChhHHHHHHHHHHhcCChhHHHHHHH
Q 006388 188 LALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRT---MAWKNVVSWTAMLVGYGQNGCSEEAVKIFC 264 (647)
Q Consensus 188 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 264 (647)
|++++|..++.++++.. +.+...|.+|...|-..|+.+++...+-- +...|..-|-.+..-..+.|++++|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 44444444444444443 23333444444444444444444433321 122233444444444444444444444444
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHH----HHHHHHHHhcCCHHHHHHHHhhcCC--
Q 006388 265 NMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVS----NALVTFYGKCGNIEDSHRLFNEMNV-- 338 (647)
Q Consensus 265 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~~~~-- 338 (647)
+..+.. +++...+---...|-+.|+...|..-+.++....-+.|..-. ...+..|...++-+.|.+.++....
T Consensus 232 rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 232 RAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 444431 222222223333444444444444444444443221111111 1123334444444555555554432
Q ss_pred C---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC---------------------------CCCHHHHHHHHHHHhc
Q 006388 339 R---DEVSWTALVSGYAKFGKANETIDLFEKMLSHGL---------------------------KPDEVTLIGVLSACSR 388 (647)
Q Consensus 339 ~---d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------------------------~p~~~t~~~ll~a~~~ 388 (647)
. +...++.++..|.+...++.|......+..... .++... ..+.-++.+
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~ 389 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVH 389 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhc
Confidence 1 233455666666666666666666655554212 222222 112223333
Q ss_pred CCcHHHHHHHHHHHHHhcC--CCcChHHHHHHHHHHHHcCCHHHHHHHHHhCC---CCCChhhHHHHHHHHHhcCChhHH
Q 006388 389 AGLVEKGRHYFEIMVKEYG--IRPIHDHYTCMIDILSRAGRLEEAKSFINKMP---FPPDAIGWATLLSSCRIHGNVEIG 463 (647)
Q Consensus 389 ~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~ll~~~~~~~~~~~a 463 (647)
....+....+....... . ..-+...|.-+.++|...|++.+|+.++..+- ...+..+|--+...|...|.+++|
T Consensus 390 L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 390 LKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred ccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 33333333333333332 4 33456889999999999999999999999882 223477999999999999999999
Q ss_pred HHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhCCCccCCCcce
Q 006388 464 KWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREKGVRKDPGCSW 517 (647)
Q Consensus 464 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~ 517 (647)
.+.+++++...|++..+-..|+.+|...|+.++|.+++..+..-+-+..+++.|
T Consensus 469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 469 IEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 999999999999999999999999999999999999999887433333355554
No 37
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=1.9e-09 Score=104.21 Aligned_cols=480 Identities=13% Similarity=0.099 Sum_probs=333.8
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHH
Q 006388 17 ASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSPLVDMYAKLGLIYDA 96 (647)
Q Consensus 17 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 96 (647)
...+++..|..+|++.+.-. ..+...|..-+..-.+...+..|+.+++..+..-+..|. .+-..+-+--..|++..|
T Consensus 84 esq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~ga 160 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGA 160 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHH
Confidence 34567788889999888765 456667777777777888899999999998876533343 344455566677999999
Q ss_pred HHHhccCC--CCCchHHHHHHHHHHhcCChHHHHHHhhcCC--CCCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 006388 97 KRGFDELP--EKNIVMYNTMITGLLRRGLVEESRRLFRGMK--DKDSISWTTMITGLMQNGLEREAIDLFREMRLEGLAM 172 (647)
Q Consensus 97 ~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 172 (647)
+++|++-. +||.-.|++.|.--.+...++.|..+++... .|++.+|--..+.=.++|+...|..+|....+. -.
T Consensus 161 RqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~ 238 (677)
T KOG1915|consen 161 RQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LG 238 (677)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hh
Confidence 99999876 5999999999999999999999999998754 588888888888888899999999999887653 12
Q ss_pred ChhhHHHHHHHH----hcCCChHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCCHHHHHHH--------HhcCCCC-
Q 006388 173 DQFTFGSVLTAC----GGLLALEEGKQIHAFIIRNDHKD-NVFVGSALVDMYCKCKSIKYAESV--------FRTMAWK- 238 (647)
Q Consensus 173 d~~t~~~ll~~~----~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~--------~~~~~~~- 238 (647)
|...-..++.++ .+...++.|.-++...+..-... ....|..+...--+.|+.....+. ++.+...
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 333333344444 35567888888888888763221 134555555555555654433332 2222233
Q ss_pred --ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHH---hccCChHHHHHHHHHHHHhCC
Q 006388 239 --NVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDD-------FTLGSVISSC---ANLASLEEGTQFHGRSLVTGL 306 (647)
Q Consensus 239 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~---~~~~~~~~a~~~~~~~~~~~~ 306 (647)
|-.+|--.+..--..|+.+...++|++.... ++|-. ..|.-+=-+| ....+.+.++++++..++. +
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-I 396 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-I 396 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-c
Confidence 4567777777778889999999999999865 56632 1222221222 3467889999999988883 3
Q ss_pred CcchhHHHHHHHHH----HhcCCHHHHHHHHhhcC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 006388 307 ISFITVSNALVTFY----GKCGNIEDSHRLFNEMN--VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLI 380 (647)
Q Consensus 307 ~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~--~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 380 (647)
+....++.-+=-+| .++.++..|.+++.... .|-..++..-|..-.+.++++....++++.++.+ +-|..+|.
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~ 475 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWS 475 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHH
Confidence 44455555444444 46788999999998876 4566677777888888999999999999999853 33556787
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCChhhHHHHHHHHH----
Q 006388 381 GVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPPDAIGWATLLSSCR---- 455 (647)
Q Consensus 381 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~---- 455 (647)
.....-...|+.+.|..+|+-.+..-.+..-...|.+.|+.=...|.++.|..++++. ...+...+|-++..--.
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~ 555 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASE 555 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccc
Confidence 7777777889999999999988875333334466778888888899999999999887 33445557877765433
Q ss_pred -hcC-----------ChhHHHHHHHHHhcc----CCCC--chhHHHHHHhhhhCCChhHHHHHHHHH
Q 006388 456 -IHG-----------NVEIGKWAAESLLEL----DPYN--PASYVLLSSIYASKGKWDHVSQLRRTM 504 (647)
Q Consensus 456 -~~~-----------~~~~a~~~~~~~~~~----~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m 504 (647)
+.+ +...|..+|+++... +|.. ...+..+.+.=...|...+...+-.+|
T Consensus 556 ~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~m 622 (677)
T KOG1915|consen 556 GQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKM 622 (677)
T ss_pred cccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhc
Confidence 233 566788888877643 3321 122333334444556666665555555
No 38
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.52 E-value=5.3e-11 Score=123.07 Aligned_cols=475 Identities=14% Similarity=0.070 Sum_probs=267.6
Q ss_pred CCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHH
Q 006388 3 FHDGVSWNLLISGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSP 82 (647)
Q Consensus 3 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 82 (647)
.||-+||.++|.-|+..|+.+.|- +|.-|.-... +.+...|+.++.+..+.++.+.++ .|-+.+|+.
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksL-pv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSL-PVREGVFRGLVASHKEANDAENPK-----------EPLADTYTN 88 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccc-cccchhHHHHHhcccccccccCCC-----------CCchhHHHH
Confidence 366688888888888888888877 8888877776 667788888888888888776665 577788999
Q ss_pred HHHHHHhcCChHH---HHHHhccCCC---------------------C-CchHHHHHHHHHHhcCChHHHHHHhhcCCC-
Q 006388 83 LVDMYAKLGLIYD---AKRGFDELPE---------------------K-NIVMYNTMITGLLRRGLVEESRRLFRGMKD- 136 (647)
Q Consensus 83 li~~~~~~g~~~~---A~~~~~~~~~---------------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 136 (647)
|...|.+.|++.. .++.++.+.+ | -...-.+.+.-....|.++.+.+++..++.
T Consensus 89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvs 168 (1088)
T KOG4318|consen 89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVS 168 (1088)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 9999999988654 3332222211 0 000111233334445555555555544431
Q ss_pred ---------------------------------CCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 006388 137 ---------------------------------KDSISWTTMITGLMQNGLEREAIDLFREMRLEGLAMDQFTFGSVLTA 183 (647)
Q Consensus 137 ---------------------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~ 183 (647)
+++.++.+++..-.-+|+.+.|..++.+|.+.|++.+.+-|-.++-+
T Consensus 169 a~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g 248 (1088)
T KOG4318|consen 169 AWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG 248 (1088)
T ss_pred cccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc
Confidence 35566777777777777777777777777777777777766666654
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChh-----H
Q 006388 184 CGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMAWKNVVSWTAMLVGYGQNGCSE-----E 258 (647)
Q Consensus 184 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~-----~ 258 (647)
.++......+..-|...|+.|+..|+.-.+-...+.|....+....+.-..-....+..+..+...+.+.+ -
T Consensus 249 ---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~ 325 (1088)
T KOG4318|consen 249 ---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKS 325 (1088)
T ss_pred ---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHH
Confidence 66667777777777777777777777766666655544322221111100001112222222211111111 1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC---cchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 006388 259 AVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLI---SFITVSNALVTFYGKCGNIEDSHRLFNE 335 (647)
Q Consensus 259 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 335 (647)
....+.+..-.|+......|...... ...|.-+..+++-..+..--.. .++..+..+ +.+.|.+
T Consensus 326 v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~------------lrqyFrr 392 (1088)
T KOG4318|consen 326 VIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGAL------------LRQYFRR 392 (1088)
T ss_pred HHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHH------------HHHHHHH
Confidence 12222222223433333333322222 2255555666655555322111 112222222 3334444
Q ss_pred cCCCChh-hHHHHHHHHHH---cCChHHHHHHHHHH------------HH----CCCCC-------CHHHHHHHHHHHhc
Q 006388 336 MNVRDEV-SWTALVSGYAK---FGKANETIDLFEKM------------LS----HGLKP-------DEVTLIGVLSACSR 388 (647)
Q Consensus 336 ~~~~d~~-~~~~li~~~~~---~g~~~~A~~~~~~m------------~~----~g~~p-------~~~t~~~ll~a~~~ 388 (647)
+..+... .++ ...+... ..+..+..++.... .. .-..| =...-+.++..|.+
T Consensus 393 ~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~s 471 (1088)
T KOG4318|consen 393 IERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNS 471 (1088)
T ss_pred HHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHH
Confidence 4333211 111 1111111 11111222221111 00 00011 01122344555555
Q ss_pred CCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhCC-----CCCChhhHHHHHHHHHhcCChhHH
Q 006388 389 AGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKMP-----FPPDAIGWATLLSSCRIHGNVEIG 463 (647)
Q Consensus 389 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~ll~~~~~~~~~~~a 463 (647)
.-+..+++..-+.... +-+ ...|..||+.+......++|..+.++.. +.-|..-+..+.+...+++....+
T Consensus 472 e~n~lK~l~~~ekye~-~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl 547 (1088)
T KOG4318|consen 472 EYNKLKILCDEEKYED-LLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDL 547 (1088)
T ss_pred HHHHHHHHHHHHHHHH-HHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHH
Confidence 5555555544333322 122 1578999999999999999999998883 233455677888888899988888
Q ss_pred HHHHHHHhcc---CCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhCCCcc
Q 006388 464 KWAAESLLEL---DPYNPASYVLLSSIYASKGKWDHVSQLRRTMREKGVRK 511 (647)
Q Consensus 464 ~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 511 (647)
..+++...+. .|.-..++..+.+.-+..|+.+...++++-+...|+.-
T Consensus 548 ~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 548 STILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 8888877653 34445667788888899999999999999999999865
No 39
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=1.3e-09 Score=105.27 Aligned_cols=456 Identities=9% Similarity=0.071 Sum_probs=330.6
Q ss_pred CcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCC--CCc-hHHHHHHHH
Q 006388 41 SRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSPLVDMYAKLGLIYDAKRGFDELPE--KNI-VMYNTMITG 117 (647)
Q Consensus 41 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~ 117 (647)
+...|..-.+--...+++..|+.+++.++... ..+...+-..+.+-.++.++..|+.++++... |-+ ..|--.+-.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ym 150 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 33444444445556778889999999998876 57778888899999999999999999998763 322 356666777
Q ss_pred HHhcCChHHHHHHhhcCC--CCCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHH
Q 006388 118 LLRRGLVEESRRLFRGMK--DKDSISWTTMITGLMQNGLEREAIDLFREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQ 195 (647)
Q Consensus 118 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~ 195 (647)
--..|++..|.++|+.-. +|+..+|++.|..=.+....+.|..+|++.+- +.|+..+|..-.+.=-+.|+...+.+
T Consensus 151 EE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred HHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHH
Confidence 778899999999998754 58999999999999999999999999999876 45999999988888889999999999
Q ss_pred HHHHHHHc-CC-CCchhHHHHHHHHHHhcCCHHHHHHHHhcC----CCCC-hhHHHHHHHHHHhcCCh---hHHHHH---
Q 006388 196 IHAFIIRN-DH-KDNVFVGSALVDMYCKCKSIKYAESVFRTM----AWKN-VVSWTAMLVGYGQNGCS---EEAVKI--- 262 (647)
Q Consensus 196 ~~~~~~~~-g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~----~~~~-~~~~~~li~~~~~~g~~---~~A~~~--- 262 (647)
++..+++. |- ..+..++++....-.++..++.|.-+|.-. +... ...|.....-=-+-|+- ++++--
T Consensus 229 VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 229 VYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 99988764 21 123345555555566677788888887543 3322 23333333333334443 333322
Q ss_pred --HHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcch--hHHHHHHHH--------HHhcCCHHHHH
Q 006388 263 --FCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFI--TVSNALVTF--------YGKCGNIEDSH 330 (647)
Q Consensus 263 --~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~--------~~~~g~~~~A~ 330 (647)
|+.+.+.+ +-|-.++--.+..-...|+.+...++++.++..- +|-. ..|...|-. -....+.+.+.
T Consensus 309 ~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 309 FQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 33444432 4466777777888888899999999999988653 4421 112222211 13467888888
Q ss_pred HHHhhcC---CCChhh----HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 006388 331 RLFNEMN---VRDEVS----WTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMV 403 (647)
Q Consensus 331 ~~~~~~~---~~d~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 403 (647)
++|+... .....| |-....--.++.+...|.+++...+ |.-|-..+|...|..-.+.+.+|....+++..+
T Consensus 387 ~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 387 QVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 8887655 223344 4333444456788999999988765 578999999999999999999999999999987
Q ss_pred HhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCch
Q 006388 404 KEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKMPFPPD----AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPA 479 (647)
Q Consensus 404 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 479 (647)
. --+-+..+|......=...|+.+.|..+|+-+-.+|. ...|.+.|.--...|.++.|..+++++++..+.. .
T Consensus 465 e--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~-k 541 (677)
T KOG1915|consen 465 E--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHV-K 541 (677)
T ss_pred h--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccc-h
Confidence 4 2233567888888888889999999999988743442 5678888888889999999999999999988744 3
Q ss_pred hHHHHHHhhh-----hCC-----------ChhHHHHHHHHHHh
Q 006388 480 SYVLLSSIYA-----SKG-----------KWDHVSQLRRTMRE 506 (647)
Q Consensus 480 ~~~~l~~~~~-----~~g-----------~~~~a~~~~~~m~~ 506 (647)
++.+.+.--. +.| ....|.++|++...
T Consensus 542 vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 542 VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 6666665443 444 56678888877643
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.50 E-value=3.6e-11 Score=123.27 Aligned_cols=287 Identities=12% Similarity=0.015 Sum_probs=184.4
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 006388 152 NGLEREAIDLFREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESV 231 (647)
Q Consensus 152 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 231 (647)
.|++++|.+.+....+..-.| ...|.....+....|+.+.+.+.+..+.+....+...........+...|+.+.|...
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 477777776666654432111 1223333344456777777777777776543222222222345677778888888888
Q ss_pred HhcCCC---CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCc
Q 006388 232 FRTMAW---KNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLIS 308 (647)
Q Consensus 232 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~ 308 (647)
+++..+ .++.....+...|.+.|++++|.+++..+.+.+..++. .+..+-.
T Consensus 176 l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~~------------------------- 229 (398)
T PRK10747 176 VDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLEQ------------------------- 229 (398)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHHH-------------------------
Confidence 777654 25567777788888888888888888888877643222 1110000
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006388 309 FITVSNALVTFYGKCGNIEDSHRLFNEMN---VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSA 385 (647)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 385 (647)
..+..++.......+.+...++++.++ ..++.....+..++...|+.++|..++++..+. .||... .++.+
T Consensus 230 --~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~ 303 (398)
T PRK10747 230 --QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIP 303 (398)
T ss_pred --HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHh
Confidence 011112222223334455555566554 336667777888888888888888888888773 444421 12333
Q ss_pred HhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCChhHHH
Q 006388 386 CSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPPDAIGWATLLSSCRIHGNVEIGK 464 (647)
Q Consensus 386 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~ 464 (647)
....++.+++.+..+...+. .+-|...+.++..++.+.|++++|.+.|++. ...|+...+..|...+.+.|+.++|.
T Consensus 304 ~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~ 381 (398)
T PRK10747 304 RLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAA 381 (398)
T ss_pred hccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 34558888888888888764 3445567778888888888888888888887 56788888888888888888888888
Q ss_pred HHHHHHhcc
Q 006388 465 WAAESLLEL 473 (647)
Q Consensus 465 ~~~~~~~~~ 473 (647)
..+++.+.+
T Consensus 382 ~~~~~~l~~ 390 (398)
T PRK10747 382 AMRRDGLML 390 (398)
T ss_pred HHHHHHHhh
Confidence 888887664
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=3.7e-10 Score=108.96 Aligned_cols=356 Identities=14% Similarity=0.121 Sum_probs=193.7
Q ss_pred CCchHHHHHHHHHHhcCChHHHHHHhhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHH--HHHHH
Q 006388 106 KNIVMYNTMITGLLRRGLVEESRRLFRGMKDKDSISWTTMITGLMQNGLEREAIDLFREMRLEGLAMDQFTFG--SVLTA 183 (647)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~--~ll~~ 183 (647)
.|...+-.....+.+.|....|++.|......-+..|.+-+....-.-+.+.+. .... |...|..-+. .+..+
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~----~l~~-~l~~~~h~M~~~F~~~a 236 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILS----ILVV-GLPSDMHWMKKFFLKKA 236 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHH----HHHh-cCcccchHHHHHHHHHH
Confidence 344434344444556666666776666655544444444333222222222221 1111 1111222111 23344
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC------ChhHHHHHHHHHHhcCChh
Q 006388 184 CGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMAWK------NVVSWTAMLVGYGQNGCSE 257 (647)
Q Consensus 184 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~ 257 (647)
+......+++.+-.......|++.+...-+....++-...+++.|+.+|+++... |..+|+.++ |+++.+..
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~sk 314 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHH
Confidence 4455566666666666666666666665555555666666777777777776643 334555444 33332222
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 006388 258 EAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMN 337 (647)
Q Consensus 258 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 337 (647)
+..+.+-...=-+--+.|...+.+-++-.++.++|..+|++.++.+ +....+|+.+..-|....+...|.+-++...
T Consensus 315 --Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 315 --LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred --HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 1111111111012233455556666666667777777777776665 4455666666777777777777777776654
Q ss_pred ---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChH
Q 006388 338 ---VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPD-EVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHD 413 (647)
Q Consensus 338 ---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 413 (647)
..|-..|-.+.++|.-.+.+.-|+-.|++..+. +|+ ...|.+|..+|.+.++.++|+..|.....- -..+..
T Consensus 392 di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~--~dte~~ 467 (559)
T KOG1155|consen 392 DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL--GDTEGS 467 (559)
T ss_pred hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc--cccchH
Confidence 346666777777777777777777777776663 444 346677777777777777777777766542 233446
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-------C-CCCChh-hHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 006388 414 HYTCMIDILSRAGRLEEAKSFINKM-------P-FPPDAI-GWATLLSSCRIHGNVEIGKWAAESLLELDP 475 (647)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 475 (647)
.+..|.++|-+.++.++|...|++. + ..|... .-.-|..-+.+.+++++|.........-++
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~ 538 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGET 538 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCc
Confidence 6677777777777777777666543 1 222211 111133344566677776666555554433
No 42
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=4.1e-11 Score=114.64 Aligned_cols=424 Identities=13% Similarity=0.088 Sum_probs=272.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHhccCCC----CCchH-HHHHHHHHHhcCChHHHHHHhhcCCCC----C----eehHHH
Q 006388 78 FVGSPLVDMYAKLGLIYDAKRGFDELPE----KNIVM-YNTMITGLLRRGLVEESRRLFRGMKDK----D----SISWTT 144 (647)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~----~----~~~~~~ 144 (647)
.+...|..-|.......+|...++-+.+ ||... --.+...+.+...+.+|++.++..... + +...+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 3444566667777777778777776654 33221 123445667778888888887654431 1 223444
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCC------------CchhHH
Q 006388 145 MITGLMQNGLEREAIDLFREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHK------------DNVFVG 212 (647)
Q Consensus 145 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~------------~~~~~~ 212 (647)
+--.+.+.|+++.|+..|+...+. .|+-.+-..++-.+...|+-++.++.|..++..... |+....
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 445677888888888888887764 477666555555556678888888888888764322 222222
Q ss_pred HHHH-----HHHHhcCC--HHH----HHHHHhcCCCCChh---HHH------------------HHHHHHHhcCChhHHH
Q 006388 213 SALV-----DMYCKCKS--IKY----AESVFRTMAWKNVV---SWT------------------AMLVGYGQNGCSEEAV 260 (647)
Q Consensus 213 ~~li-----~~y~~~g~--~~~----A~~~~~~~~~~~~~---~~~------------------~li~~~~~~g~~~~A~ 260 (647)
|.-+ .-.-+.+. .++ |.++..-+..++-. -|. .-..-|.++|+++.|+
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ai 439 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAI 439 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHH
Confidence 2211 11111111 111 12222222233211 011 1123578999999999
Q ss_pred HHHHHHHHCCCCCCHHHHH--HHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 006388 261 KIFCNMQRNGIEPDDFTLG--SVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNV 338 (647)
Q Consensus 261 ~~~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 338 (647)
+++.-+.+..-+.-...-+ +++.-...-.++..|.++-+..+..+ .-+....+.-.+.-...|++++|.+.+++...
T Consensus 440 eilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ 518 (840)
T KOG2003|consen 440 EILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALN 518 (840)
T ss_pred HHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHc
Confidence 9998887654332222222 23333333456777777766665443 22222222223334457999999999999998
Q ss_pred CChhhHHHHHH---HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHH
Q 006388 339 RDEVSWTALVS---GYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHY 415 (647)
Q Consensus 339 ~d~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 415 (647)
.|...-.+|.. .+-..|+.++|++.|-++... +..+...+..+.+.|....+..+|++++..... -++.|+...
T Consensus 519 ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~il 595 (840)
T KOG2003|consen 519 NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAIL 595 (840)
T ss_pred CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHH
Confidence 87765555443 467789999999999988753 344666788888889999999999999877753 556678899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-C-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCC
Q 006388 416 TCMIDILSRAGRLEEAKSFINKM-P-FPPDAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGK 493 (647)
Q Consensus 416 ~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 493 (647)
..|.++|-+.|+-..|.+..-.- . ++.+..+..-|..-|....-.+.++..++++.-+.|+-..--..++..+.+.|+
T Consensus 596 skl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgn 675 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGN 675 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccc
Confidence 99999999999999998875443 3 333455555455666666677899999999998999654444555666778999
Q ss_pred hhHHHHHHHHHHhC
Q 006388 494 WDHVSQLRRTMREK 507 (647)
Q Consensus 494 ~~~a~~~~~~m~~~ 507 (647)
+..|.++++....+
T Consensus 676 yqka~d~yk~~hrk 689 (840)
T KOG2003|consen 676 YQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987653
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.47 E-value=6.9e-11 Score=121.23 Aligned_cols=275 Identities=11% Similarity=0.030 Sum_probs=197.0
Q ss_pred cCCHHHHHHHHhcCCCC--Ch-hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCChHHHHH
Q 006388 222 CKSIKYAESVFRTMAWK--NV-VSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLG--SVISSCANLASLEEGTQ 296 (647)
Q Consensus 222 ~g~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~ 296 (647)
.|+++.|++.+....+. ++ ..+-....+..+.|+++.|.+.|.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 47777777777665443 12 23333334446778888888888888764 45543332 22446667788888888
Q ss_pred HHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh-----------hhHHHHHHHHHHcCChHHHHHHHH
Q 006388 297 FHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVRDE-----------VSWTALVSGYAKFGKANETIDLFE 365 (647)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~-----------~~~~~li~~~~~~g~~~~A~~~~~ 365 (647)
.++.+.+.. +.++.+...+...|.+.|++++|.+++..+.+... .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888887765 55677778888888888888888888887763321 133334444444455566666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-
Q 006388 366 KMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPPD- 443 (647)
Q Consensus 366 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~- 443 (647)
.+.+. .+.+......+..++...|+.++|...++...+. .|+.... ++.+....|+.+++.+.+++. +..|+
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 65432 3446668888899999999999999999988753 4554322 223333559999999999887 44554
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 444 AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 444 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
+..+.++...|...+++++|...++++.+..|++ ..+..|+.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6678899999999999999999999999999954 6688999999999999999999987644
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.8e-09 Score=104.31 Aligned_cols=315 Identities=10% Similarity=0.036 Sum_probs=219.5
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChh-HHHHHHHHHHhcCChhHHHH
Q 006388 183 ACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMAWKNVV-SWTAMLVGYGQNGCSEEAVK 261 (647)
Q Consensus 183 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~ 261 (647)
...+.|....|...+...+.. -+..|.+-+....-..+.+.+..+-...+..+.. .--.+..++....+.+++++
T Consensus 173 v~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~ 248 (559)
T KOG1155|consen 173 VLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQ 248 (559)
T ss_pred HHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666555432 1222333333333333444444444333332211 11223455666667788888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCC--CcchhHHHHHHHHHHhcCCHH-HHHHHHhhcCC
Q 006388 262 IFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGL--ISFITVSNALVTFYGKCGNIE-DSHRLFNEMNV 338 (647)
Q Consensus 262 ~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~ 338 (647)
-.......|+.-+...-+....+.-...++++|+.+|+.+.+.+. -.|..+|+.++-.-..+..+. -|..+++ +.+
T Consensus 249 k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~-idK 327 (559)
T KOG1155|consen 249 KKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSN-IDK 327 (559)
T ss_pred HHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHH-hcc
Confidence 888888777655555444445555677888999999998888742 125566665553332222222 2222222 222
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHH
Q 006388 339 RDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEV-TLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTC 417 (647)
Q Consensus 339 ~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 417 (647)
--+.|...+..-|.-.++.++|...|++.++. .|... .|+.+..-|....+...|.+.++..++ -.+.|-..|-.
T Consensus 328 yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYG 403 (559)
T KOG1155|consen 328 YRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYG 403 (559)
T ss_pred CCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhh
Confidence 23456666677788889999999999999884 56544 677777889999999999999999884 23446688999
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChh
Q 006388 418 MIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWD 495 (647)
Q Consensus 418 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 495 (647)
|..+|.-.+...-|+-+|+++ ..+| |...|.+|+..|.+.++.++|++.+.++...+..+..+++.|+++|-+.++.+
T Consensus 404 LGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~ 483 (559)
T KOG1155|consen 404 LGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLN 483 (559)
T ss_pred hhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHH
Confidence 999999999999999999998 5666 68999999999999999999999999999988878899999999999999999
Q ss_pred HHHHHHHHHHh
Q 006388 496 HVSQLRRTMRE 506 (647)
Q Consensus 496 ~a~~~~~~m~~ 506 (647)
+|.+.+++-.+
T Consensus 484 eAa~~yek~v~ 494 (559)
T KOG1155|consen 484 EAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHH
Confidence 99999988765
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.46 E-value=2.8e-10 Score=117.36 Aligned_cols=289 Identities=13% Similarity=0.036 Sum_probs=160.2
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChh-hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 006388 151 QNGLEREAIDLFREMRLEGLAMDQF-TFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAE 229 (647)
Q Consensus 151 ~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 229 (647)
..|+++.|.+.+.+..+. .|+.. .+.....+....|+.+.+.+.+....+....+...+.......+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 467777777777766553 23322 233334555566777777777777665432222233444466666677777777
Q ss_pred HHHhcCCC---CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCC
Q 006388 230 SVFRTMAW---KNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGL 306 (647)
Q Consensus 230 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 306 (647)
..++.+.+ .+...+..+...+.+.|++++|.+++..+.+.++.+ ...+..+-.
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~-~~~~~~l~~----------------------- 229 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD-DEEFADLEQ----------------------- 229 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-HHHHHHHHH-----------------------
Confidence 77666653 244566666667777777777777777776665322 111111000
Q ss_pred CcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH---H
Q 006388 307 ISFITVSNALVTFYGKCGNIEDSHRLFNEMNV---RDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTL---I 380 (647)
Q Consensus 307 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~ 380 (647)
..+..+++.-......+...+.++..+. .++..+..+...+...|+.++|.+++++..+. .||.... .
T Consensus 230 ----~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~ 303 (409)
T TIGR00540 230 ----KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPL 303 (409)
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHH
Confidence 0001111111112223344445555542 36777777888888888888888888888775 3444321 1
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHh--C-CCCCChhhHHHHHHHHHhc
Q 006388 381 GVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINK--M-PFPPDAIGWATLLSSCRIH 457 (647)
Q Consensus 381 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~ll~~~~~~ 457 (647)
.........++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.
T Consensus 304 l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~ 383 (409)
T TIGR00540 304 CLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQA 383 (409)
T ss_pred HHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHc
Confidence 111122334566666666666655432222224455666666666666666666662 2 3456665566666666666
Q ss_pred CChhHHHHHHHHHh
Q 006388 458 GNVEIGKWAAESLL 471 (647)
Q Consensus 458 ~~~~~a~~~~~~~~ 471 (647)
|+.++|.+++++.+
T Consensus 384 g~~~~A~~~~~~~l 397 (409)
T TIGR00540 384 GDKAEAAAMRQDSL 397 (409)
T ss_pred CCHHHHHHHHHHHH
Confidence 66666666666543
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=1.5e-11 Score=123.98 Aligned_cols=276 Identities=15% Similarity=0.089 Sum_probs=215.8
Q ss_pred CHHHHHHHHhcCCCC--Ch-hHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCChHHHHHHH
Q 006388 224 SIKYAESVFRTMAWK--NV-VSWTAMLVGYGQNGCSEEAVKIFCNMQRNG--IEPDDFTLGSVISSCANLASLEEGTQFH 298 (647)
Q Consensus 224 ~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 298 (647)
+..+|...|...+.. |+ .....+..+|...+++++|.++|+...+.. ..-+...|+++|.-+-+. .+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 467888889886542 33 334567789999999999999999998752 112556788877654321 122222
Q ss_pred HHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 006388 299 GRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVR---DEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPD 375 (647)
Q Consensus 299 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 375 (647)
.+-.-.--+..+.+|.++.++|.-+++.+.|++.|++..+- ...+|+.+..-+.....++.|...|+..+. +.|.
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~r 487 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPR 487 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCch
Confidence 22222222557889999999999999999999999998854 457888888888999999999999998875 4555
Q ss_pred HH-HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCc-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHH
Q 006388 376 EV-TLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRP-IHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLL 451 (647)
Q Consensus 376 ~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll 451 (647)
.. .|-.+...|.+.++++.|.-.|+.+. .+.| +.....++...+-+.|+.++|+.+++++ -.+| |+..--..+
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 44 66777888999999999999999887 5566 4566778888999999999999999998 3334 444445566
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhCC
Q 006388 452 SSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREKG 508 (647)
Q Consensus 452 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 508 (647)
..+...+++++|...+|++.++-|++...|..++.+|-+.|+.+.|..-|.-+.+..
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 677788999999999999999999999999999999999999999999888877643
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.43 E-value=2e-10 Score=118.50 Aligned_cols=282 Identities=13% Similarity=0.082 Sum_probs=188.0
Q ss_pred HhcCChHHHHHHhhcCCCC--Ce-ehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh--hHHHHHHHHhcCCChHHH
Q 006388 119 LRRGLVEESRRLFRGMKDK--DS-ISWTTMITGLMQNGLEREAIDLFREMRLEGLAMDQF--TFGSVLTACGGLLALEEG 193 (647)
Q Consensus 119 ~~~g~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~--t~~~ll~~~~~~~~~~~a 193 (647)
...|+++.|.+.+.+..+. +. ..+-.....+.+.|+++.|.+.|.+..+.. |+.. ........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 3789999999999887653 22 223344566788899999999999987643 5543 333346777889999999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHH----HHHHhcCChhHHHHHHHHH
Q 006388 194 KQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMAWK---NVVSWTAML----VGYGQNGCSEEAVKIFCNM 266 (647)
Q Consensus 194 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li----~~~~~~g~~~~A~~~~~~m 266 (647)
.+.++.+.+.. +.+..+...+...|.+.|+++.|.+.++...+. +...+..+- .+....+..+++.+.+..+
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999986 556778889999999999999999999988754 222222111 1112122222222222222
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC--Chhh-
Q 006388 267 QRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVR--DEVS- 343 (647)
Q Consensus 267 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--d~~~- 343 (647)
... .| + ..+.++..+..+...+...|+.++|.+++++..+. |...
T Consensus 252 ~~~--~p-----------------------------~-~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~ 299 (409)
T TIGR00540 252 WKN--QP-----------------------------R-HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAI 299 (409)
T ss_pred HHH--CC-----------------------------H-HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccc
Confidence 221 11 0 01234555666666777777777777777766532 2221
Q ss_pred --HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHH
Q 006388 344 --WTALVSGYAKFGKANETIDLFEKMLSHGLKPDEV---TLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCM 418 (647)
Q Consensus 344 --~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 418 (647)
+..........++.+.+++.+++..+. .|+.. ...++...|.+.|++++|.++|+.... ....|+...+..+
T Consensus 300 ~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~~p~~~~~~~L 376 (409)
T TIGR00540 300 SLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA-CKEQLDANDLAMA 376 (409)
T ss_pred hhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhcCCCHHHHHHH
Confidence 111222223356777888888887764 55554 445777888899999999999985322 2557888888899
Q ss_pred HHHHHHcCCHHHHHHHHHhC
Q 006388 419 IDILSRAGRLEEAKSFINKM 438 (647)
Q Consensus 419 i~~~~~~g~~~~A~~~~~~~ 438 (647)
..++.+.|+.++|.+++++.
T Consensus 377 a~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999998874
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=2.6e-11 Score=122.27 Aligned_cols=277 Identities=16% Similarity=0.125 Sum_probs=211.3
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC------ChhHHHHHHHHHHhcCChhHHHHH
Q 006388 189 ALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMAWK------NVVSWTAMLVGYGQNGCSEEAVKI 262 (647)
Q Consensus 189 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~ 262 (647)
+.++|...|..+.+. ......+..-+..+|...+++++|+++|+.+.+. +...|.+.+..+.+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 455666666664333 3334477777888899999999999999887643 56677777665433 223333
Q ss_pred HHH-HHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh
Q 006388 263 FCN-MQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVRDE 341 (647)
Q Consensus 263 ~~~-m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~ 341 (647)
+.+ +... -+-.+.||..+.+.++-.++.+.|.+.|++.+..+ +....+|+.+..-+....++|.|...|+.....|+
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 322 2222 23456789999999999999999999999888765 34778888888889999999999999999987777
Q ss_pred hhHHH---HHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCc-ChHHHH
Q 006388 342 VSWTA---LVSGYAKFGKANETIDLFEKMLSHGLKPD-EVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRP-IHDHYT 416 (647)
Q Consensus 342 ~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 416 (647)
..||+ +...|.+.++++.|+-.|++..+. .|. .+....+...+-+.|+.++|+++++.+.. +.| ++..--
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~---ld~kn~l~~~ 561 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH---LDPKNPLCKY 561 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh---cCCCCchhHH
Confidence 66555 567899999999999999999884 554 44666667778889999999999998874 333 333334
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 006388 417 CMIDILSRAGRLEEAKSFINKM-PFPPD-AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYN 477 (647)
Q Consensus 417 ~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 477 (647)
..+..+...+++++|+..+++. .+.|+ ..++..++..|.+.|+.+.|+.-|.-+..++|.-
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 4566778899999999999999 35565 7788888899999999999999999999999963
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.41 E-value=1.7e-12 Score=127.10 Aligned_cols=255 Identities=15% Similarity=0.121 Sum_probs=87.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHH-HHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 006388 145 MITGLMQNGLEREAIDLFREMRLEGLAMDQFTFGS-VLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCK 223 (647)
Q Consensus 145 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 223 (647)
+...+.+.|++++|++++.+-......|+...|-. +...+...++.+.|.+.++.+.+.+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 45566677777888777755444332344444433 333444567777777777777766532 45556666666 5777
Q ss_pred CHHHHHHHHhcCCC--CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 006388 224 SIKYAESVFRTMAW--KNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNG-IEPDDFTLGSVISSCANLASLEEGTQFHGR 300 (647)
Q Consensus 224 ~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 300 (647)
++++|.++++..-+ ++...+..++..+.+.++++++.+++++..... .+++...|..+...+.+.|+.++|...++.
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777777766532 355667777777778888888888887766432 234555566666667777777777777777
Q ss_pred HHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 006388 301 SLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMN---VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEV 377 (647)
Q Consensus 301 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 377 (647)
.++.. +.+..+.+.++..+...|+.+++.++++... ..|...|..+..+|...|++++|+..|++..... +.|..
T Consensus 172 al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~ 249 (280)
T PF13429_consen 172 ALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPL 249 (280)
T ss_dssp HHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HH
T ss_pred HHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-ccccc
Confidence 77764 3356666777777777777777655555443 3456667777777777777777777777776631 23455
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHH
Q 006388 378 TLIGVLSACSRAGLVEKGRHYFEIMV 403 (647)
Q Consensus 378 t~~~ll~a~~~~g~~~~a~~~~~~~~ 403 (647)
+...+..++...|+.++|.++.+...
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 66666677777777777777665543
No 50
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=2.7e-09 Score=105.73 Aligned_cols=262 Identities=13% Similarity=0.046 Sum_probs=206.3
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 006388 239 NVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVT 318 (647)
Q Consensus 239 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 318 (647)
++........-+-..+++.+.+++++...+.. ++....+..-|.++...|+-.+-..+-..+++. .|....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 34445555666778899999999999988763 455555555566777777766666665566655 3667788999999
Q ss_pred HHHhcCCHHHHHHHHhhcCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHH
Q 006388 319 FYGKCGNIEDSHRLFNEMNVRD---EVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKG 395 (647)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~d---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 395 (647)
.|.-.|+..+|++.|.+...-| ...|-....+|+-.|..++|+..+...-+. ++-...-+.-+.--|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 9999999999999999877444 458999999999999999999999887663 121222333444568889999999
Q ss_pred HHHHHHHHHhcCCCc-ChHHHHHHHHHHHHcCCHHHHHHHHHhCC-----C---CC-ChhhHHHHHHHHHhcCChhHHHH
Q 006388 396 RHYFEIMVKEYGIRP-IHDHYTCMIDILSRAGRLEEAKSFINKMP-----F---PP-DAIGWATLLSSCRIHGNVEIGKW 465 (647)
Q Consensus 396 ~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~---~p-~~~~~~~ll~~~~~~~~~~~a~~ 465 (647)
.++|.... ++.| |+..++-+.-+....+.+.+|..+|+..- . .+ -..+|+.|+.+|++.+.+++|+.
T Consensus 400 e~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 400 EKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 99999886 5555 55677777777778899999999998761 1 11 24568899999999999999999
Q ss_pred HHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 466 AAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 466 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
.+++.+.+.|.++.+|.+++-+|...|+++.|.+.|.+..-
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998644
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.36 E-value=6.2e-09 Score=99.24 Aligned_cols=294 Identities=14% Similarity=0.099 Sum_probs=199.3
Q ss_pred HHHHHHHHh--CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 006388 143 TTMITGLMQ--NGLEREAIDLFREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYC 220 (647)
Q Consensus 143 ~~li~~~~~--~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 220 (647)
..+..+..+ .|+|.+|.++..+-.+.+-.| ...|..-..+.-..|+.+.+-+++.++-+..-.++..+.-+......
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll 164 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL 164 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 344455444 589999999988877766443 34466666777788999999999888888755677777888888888
Q ss_pred hcCCHHHHHHHHhcC---CCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 006388 221 KCKSIKYAESVFRTM---AWKNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQF 297 (647)
Q Consensus 221 ~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 297 (647)
..|+.+.|..-.++. ..+++........+|.+.|++.....++.+|.+.|+--|+..- ++
T Consensus 165 ~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~l 227 (400)
T COG3071 165 NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------RL 227 (400)
T ss_pred hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------HH
Confidence 888888888776654 3457788888889999999999999999999888754443211 00
Q ss_pred HHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 006388 298 HGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMN---VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKP 374 (647)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 374 (647)
...+++.+++-....+..+.-...++..+ +.++..-.+++.-+.+.|+.++|.++.++..+.+..|
T Consensus 228 -----------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~ 296 (400)
T COG3071 228 -----------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP 296 (400)
T ss_pred -----------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh
Confidence 01122333333333333333334445544 2355556666777777888888888888887777666
Q ss_pred CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCChhhHHHHHHH
Q 006388 375 DEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPPDAIGWATLLSS 453 (647)
Q Consensus 375 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~ 453 (647)
+- ..+-.+.+.++...-++..+...+.++..| ..+.+|...|.+.+.+.+|.+.|+.. +..|+..+|+-+..+
T Consensus 297 ~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~ 370 (400)
T COG3071 297 RL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADA 370 (400)
T ss_pred hH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHH
Confidence 62 222345666777776666666666555544 56667777777777777777777765 566777777777777
Q ss_pred HHhcCChhHHHHHHHHHh
Q 006388 454 CRIHGNVEIGKWAAESLL 471 (647)
Q Consensus 454 ~~~~~~~~~a~~~~~~~~ 471 (647)
+.+.|+.+.|.+..++.+
T Consensus 371 ~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 371 LDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHcCChHHHHHHHHHHH
Confidence 777777777777776655
No 52
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=1.5e-08 Score=101.10 Aligned_cols=429 Identities=13% Similarity=0.106 Sum_probs=226.5
Q ss_pred CCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCchHHHH--HHHHHH--hcCChHHHHH
Q 006388 54 SRRCVDLGRQIHGHILKFGFGSYVFVGSPLVDMYAKLGLIYDAKRGFDELPEKNIVMYNT--MITGLL--RRGLVEESRR 129 (647)
Q Consensus 54 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--li~~~~--~~g~~~~A~~ 129 (647)
..|++++|.+.-.+++..+ +.+......-+-+..+.+++++|..+.+.-... .+++. +=.+|| +.+..++|..
T Consensus 24 ~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dealk 100 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEALK 100 (652)
T ss_pred cchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHHHH
Confidence 3344444444444444443 233333333333444444455554333322210 11111 233343 5556666666
Q ss_pred HhhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc
Q 006388 130 LFRGMKDKDSISWTTMITGLMQNGLEREAIDLFREMRLEGLAM-DQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDN 208 (647)
Q Consensus 130 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 208 (647)
.++.....+..+...-...+.+.|++++|+++|+.+.+.+..- |...-..++.+-... .. ..+......|+
T Consensus 101 ~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l-------~~-~~~q~v~~v~e 172 (652)
T KOG2376|consen 101 TLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL-------QV-QLLQSVPEVPE 172 (652)
T ss_pred HHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-------hH-HHHHhccCCCc
Confidence 6664434344344444556667777777777777776554321 111111121111100 00 01111111111
Q ss_pred ---hhHHHHHHHHHHhcCCHHHHHHHHhcC--------CCCC-----h-----hHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006388 209 ---VFVGSALVDMYCKCKSIKYAESVFRTM--------AWKN-----V-----VSWTAMLVGYGQNGCSEEAVKIFCNMQ 267 (647)
Q Consensus 209 ---~~~~~~li~~y~~~g~~~~A~~~~~~~--------~~~~-----~-----~~~~~li~~~~~~g~~~~A~~~~~~m~ 267 (647)
...|| ....+...|++.+|+++++.. .+.| . ..---|.-.+...|+.++|..++....
T Consensus 173 ~syel~yN-~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 173 DSYELLYN-TACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred chHHHHHH-HHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 11222 334556667777777777665 1111 1 112234556778899999999999988
Q ss_pred HCCCCCCHHHHHHH---HHHHhccCChHH--HHHHHH-----------HHHHhCCCcchhHHHHHHHHHHhcCCHHHHHH
Q 006388 268 RNGIEPDDFTLGSV---ISSCANLASLEE--GTQFHG-----------RSLVTGLISFITVSNALVTFYGKCGNIEDSHR 331 (647)
Q Consensus 268 ~~g~~p~~~t~~~l---l~a~~~~~~~~~--a~~~~~-----------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 331 (647)
+.. .+|....... |.+...-.++.. ....++ .+....-......-+.++.+|. +..+.+.+
T Consensus 252 ~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~ 328 (652)
T KOG2376|consen 252 KRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQVRE 328 (652)
T ss_pred Hhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHH
Confidence 774 4454322222 122222222211 111111 1111111112222345555554 55677777
Q ss_pred HHhhcCCCC-hhhHHHHHHHH--HHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhcCCcHHHHHHHHH------
Q 006388 332 LFNEMNVRD-EVSWTALVSGY--AKFGKANETIDLFEKMLSHGLKPDE--VTLIGVLSACSRAGLVEKGRHYFE------ 400 (647)
Q Consensus 332 ~~~~~~~~d-~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~------ 400 (647)
+-...+... ...+..++... .+...+.+|.+++...-+. .|.. ......+.-....|+++.|.+++.
T Consensus 329 ~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~ 406 (652)
T KOG2376|consen 329 LSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESW 406 (652)
T ss_pred HHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh
Confidence 777776432 33444444433 2333577888888887764 3443 344555566778999999999988
Q ss_pred --HHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHH
Q 006388 401 --IMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM--------PFPPD-AIGWATLLSSCRIHGNVEIGKWAAES 469 (647)
Q Consensus 401 --~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 469 (647)
.+.+ .+. .+.+...++.++.+.++-+-|..++.+. ...+. ..+|.-+...-.++|+-++|...+++
T Consensus 407 ~ss~~~-~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~lee 483 (652)
T KOG2376|consen 407 KSSILE-AKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEE 483 (652)
T ss_pred hhhhhh-hcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHH
Confidence 4432 233 3456667888899888876666666554 22222 33444555555678999999999999
Q ss_pred HhccCCCCchhHHHHHHhhhhCCChhHHHHHHHH
Q 006388 470 LLELDPYNPASYVLLSSIYASKGKWDHVSQLRRT 503 (647)
Q Consensus 470 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 503 (647)
+.+.+|++....+.+..+|++. +.+.|..+-+.
T Consensus 484 l~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 484 LVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 9999999999999999999876 34555555443
No 53
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.35 E-value=2e-09 Score=99.39 Aligned_cols=269 Identities=13% Similarity=0.130 Sum_probs=168.7
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCC---chhHHHHHHHHHHhcCCHHHH
Q 006388 152 NGLEREAIDLFREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKD---NVFVGSALVDMYCKCKSIKYA 228 (647)
Q Consensus 152 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~y~~~g~~~~A 228 (647)
+.++++|.++|-+|.+... -+..+-.++-+.+.+.|..+.|..+|..+.++.--+ .....-.|..-|.+.|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 4789999999999988421 123345577788899999999999999988753111 123445677889999999999
Q ss_pred HHHHhcCCCCC---hhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 006388 229 ESVFRTMAWKN---VVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTG 305 (647)
Q Consensus 229 ~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 305 (647)
+.+|..+.+.. ..+.-.|+..|....+|++|++.-+++.+.|-++..+- |.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e----IA---------------------- 180 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE----IA---------------------- 180 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH----HH----------------------
Confidence 99999887643 34667788999999999999999888887654443221 10
Q ss_pred CCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006388 306 LISFITVSNALVTFYGKCGNIEDSHRLFNEMNVR---DEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGV 382 (647)
Q Consensus 306 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 382 (647)
..|.-|...+....+++.|..++.+..+- .+..--.+...+...|+++.|++.++...+.+..--..+...|
T Consensus 181 -----qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 181 -----QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred -----HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 11122333333344455555555544322 2223333445566667777777777776665322223355666
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHH-HhCCCCCChhhHHHHHHHHH
Q 006388 383 LSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFI-NKMPFPPDAIGWATLLSSCR 455 (647)
Q Consensus 383 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~ll~~~~ 455 (647)
..+|.+.|+.+++..++..+.+. .+....-..+.+......-.+.|...+ ++..-+|+...+..|+..-.
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l 326 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHL 326 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhh
Confidence 67777777777777777766543 334444444444444444445555444 34455677777777776644
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.34 E-value=2.8e-10 Score=108.27 Aligned_cols=198 Identities=14% Similarity=0.130 Sum_probs=164.6
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006388 308 SFITVSNALVTFYGKCGNIEDSHRLFNEMN---VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLS 384 (647)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 384 (647)
.....+..+...|...|++++|.+.|++.. ..+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 345667778889999999999999998765 2356778888899999999999999999998863 334557777888
Q ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhH
Q 006388 385 ACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEI 462 (647)
Q Consensus 385 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~ 462 (647)
.+...|++++|.+.++...+..........+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 899999999999999998764222334567778889999999999999999887 3344 46678889999999999999
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 463 GKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 463 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
|...++++.+..|.++..+..++.++...|++++|..+.+.+..
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999998888888888999999999999999999888765
No 55
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.33 E-value=1.3e-09 Score=100.49 Aligned_cols=221 Identities=15% Similarity=0.089 Sum_probs=143.4
Q ss_pred CCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCC-CCc--hhhHHHHHHHHHhcCChHH
Q 006388 19 HGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGF-GSY--VFVGSPLVDMYAKLGLIYD 95 (647)
Q Consensus 19 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~--~~~~~~li~~~~~~g~~~~ 95 (647)
+.++++|.++|-+|.+.. +-+..+-.+|.+.+.+.|..+.|..+|+.+.+..- ..+ ....-.|..-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 456777777777777654 44555666777777777777777777777765321 110 1222334444555566666
Q ss_pred HHHHhccCCCCCchHHHHHHHHHHhcCChHHHHHHhhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh
Q 006388 96 AKRGFDELPEKNIVMYNTMITGLLRRGLVEESRRLFRGMKDKDSISWTTMITGLMQNGLEREAIDLFREMRLEGLAMDQF 175 (647)
Q Consensus 96 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 175 (647)
|+.+|..+.+-+. --..+...|+..|-+..+|++|++.-+++.+.+-++...
T Consensus 126 AE~~f~~L~de~e----------------------------fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~ 177 (389)
T COG2956 126 AEDIFNQLVDEGE----------------------------FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV 177 (389)
T ss_pred HHHHHHHHhcchh----------------------------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh
Confidence 6666555543111 123456678888889999999999998888866554432
Q ss_pred ----hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChh----HHHHHH
Q 006388 176 ----TFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMAWKNVV----SWTAML 247 (647)
Q Consensus 176 ----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~----~~~~li 247 (647)
.|.-+........+++.|..++....+.. +..+...-.+.+.+...|+++.|.+.++.+.+.|+. +...|.
T Consensus 178 eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~ 256 (389)
T COG2956 178 EIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLY 256 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 24444455556677788888877777665 445555566777778888888888888877766643 456677
Q ss_pred HHHHhcCChhHHHHHHHHHHHCC
Q 006388 248 VGYGQNGCSEEAVKIFCNMQRNG 270 (647)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~m~~~g 270 (647)
.+|.+.|+.++.+..+.++.+..
T Consensus 257 ~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 257 ECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHhCCHHHHHHHHHHHHHcc
Confidence 77778888887777777776653
No 56
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.32 E-value=6.4e-08 Score=99.67 Aligned_cols=127 Identities=17% Similarity=0.133 Sum_probs=107.2
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHh
Q 006388 379 LIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPPD-AIGWATLLSSCRI 456 (647)
Q Consensus 379 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~ 456 (647)
|......+...+..++|...+.+..+ -..-....|......+...|.++||.+.|... -+.|+ +.+..++...+.+
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 44455677888999999887777753 22334567777888899999999999999877 57776 7788899999999
Q ss_pred cCChhHHHH--HHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhC
Q 006388 457 HGNVEIGKW--AAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 457 ~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 507 (647)
.|+...|.. ++..+++.+|.++..|..|+.++-+.|+.++|.+.|+...+.
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 999888888 999999999999999999999999999999999999988754
No 57
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.32 E-value=9e-11 Score=121.42 Aligned_cols=267 Identities=18% Similarity=0.177 Sum_probs=196.4
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 006388 261 KIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVRD 340 (647)
Q Consensus 261 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d 340 (647)
.++..+...|+.|+.+||..++.-||..|+.+.|. +|..|.-..++....+++.++......++.+.+. .|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45677889999999999999999999999999999 9999999999999999999999988888877765 677
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHH
Q 006388 341 EVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMID 420 (647)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 420 (647)
..+|+.|..+|.++||... ++..++ -...+...++..|.-..-..++..+.-.-+.-||.. ..+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHH
Confidence 8899999999999999865 333333 122344455666665555555554322223445543 3556
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-CChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHH
Q 006388 421 ILSRAGRLEEAKSFINKMPFPPDAIGWATLLSSCRIH-GNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQ 499 (647)
Q Consensus 421 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 499 (647)
.+.-.|.++.+++++..+|...-......++.-+... ..+++-........+ .| ++.+|..+...-..+|+.+.|..
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~-~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-AP-TSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CC-ChHHHHHHHHHHHhcCchhhHHH
Confidence 6777899999999999997432211222235555443 344444444444444 44 78999999999999999999999
Q ss_pred HHHHHHhCCCccCCCcceEeEcCeEEEEEecCCCCcchHHHHHHHHHHHHhhHhcCcccCCccccccc
Q 006388 500 LRRTMREKGVRKDPGCSWIKYKSRVHIFSADDWSSPYSDQIYAELEKLNRKMIKEGYVPDMSSVLHDV 567 (647)
Q Consensus 500 ~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~ 567 (647)
+...|+++|+.-.+..-|..+-+ .++ ...++.+.+-|++.|+.|+..|...-+
T Consensus 226 ll~emke~gfpir~HyFwpLl~g------~~~---------~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLLG------INA---------AQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhhc------Ccc---------chHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 99999999999888877876544 111 235677889999999999999875433
No 58
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.32 E-value=3.4e-07 Score=92.29 Aligned_cols=379 Identities=14% Similarity=0.126 Sum_probs=215.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHhhcCCCC--CeehHHHHHHHHHhC----------------C------ChhHHHHHHHH
Q 006388 109 VMYNTMITGLLRRGLVEESRRLFRGMKDK--DSISWTTMITGLMQN----------------G------LEREAIDLFRE 164 (647)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~----------------g------~~~~A~~~~~~ 164 (647)
..|.+|..-|++.|.+++|..+|++..+. .+.-++.+.++|++- | +++-.+.-|+.
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~ 328 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFES 328 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHH
Confidence 46888889999999999999999876653 233344444444332 1 11223333444
Q ss_pred HHHCCCC----------C-ChhhHHHHHHHHhcCCChHHHHHHHHHHHHcC-----CCCchhHHHHHHHHHHhcCCHHHH
Q 006388 165 MRLEGLA----------M-DQFTFGSVLTACGGLLALEEGKQIHAFIIRND-----HKDNVFVGSALVDMYCKCKSIKYA 228 (647)
Q Consensus 165 m~~~g~~----------p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-----~~~~~~~~~~li~~y~~~g~~~~A 228 (647)
+...+.. | +..+|..-.. ...|+..+-...+.++++.- ...-...|..+.+.|-..|+++.|
T Consensus 329 lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~a 406 (835)
T KOG2047|consen 329 LMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDA 406 (835)
T ss_pred HHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHH
Confidence 3332110 0 1111211111 22355666667777776642 112234688899999999999999
Q ss_pred HHHHhcCCCCC-------hhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC----------CC-------CHHHHHHHHHH
Q 006388 229 ESVFRTMAWKN-------VVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGI----------EP-------DDFTLGSVISS 284 (647)
Q Consensus 229 ~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----------~p-------~~~t~~~ll~a 284 (647)
+.+|++...-+ ...|......=.+..+++.|+++.++....-- .| +...|+..+..
T Consensus 407 Rvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dl 486 (835)
T KOG2047|consen 407 RVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADL 486 (835)
T ss_pred HHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHH
Confidence 99999876532 23566666777788889999998887753211 11 11223333444
Q ss_pred HhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC----CCCh-hhHHHHHHHHHH---cCC
Q 006388 285 CANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMN----VRDE-VSWTALVSGYAK---FGK 356 (647)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~d~-~~~~~li~~~~~---~g~ 356 (647)
--..|-++..+.+++.+++..+.....+.| ..-.+-...-++++.+++++-. -|++ ..|+.-+.-+.+ ...
T Consensus 487 eEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~k 565 (835)
T KOG2047|consen 487 EESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTK 565 (835)
T ss_pred HHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCC
Confidence 445678888888999988877544333333 3334556667889999998755 3343 368877776654 246
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HhcCCcHHHHHHHHHHHHHhcCCCcC--hHHHHHHHHHHHHcCCHHHHH
Q 006388 357 ANETIDLFEKMLSHGLKPDEVTLIGVLSA--CSRAGLVEKGRHYFEIMVKEYGIRPI--HDHYTCMIDILSRAGRLEEAK 432 (647)
Q Consensus 357 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a--~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~ 432 (647)
.+.|..+|++.++ |.+|...-+.-|+-| =..-|....|..++++... ++++. ...|+..|.--+..=-+..-.
T Consensus 566 lEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR 642 (835)
T KOG2047|consen 566 LERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTR 642 (835)
T ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccH
Confidence 7899999999998 677776644333332 2345888888888887754 44443 245665554322211111122
Q ss_pred HHHHhC-CCCCChh---hHHHHHHHHHhcCChhHHHHHHHHHhccC-CC-CchhHHHHHHhhhhCCC
Q 006388 433 SFINKM-PFPPDAI---GWATLLSSCRIHGNVEIGKWAAESLLELD-PY-NPASYVLLSSIYASKGK 493 (647)
Q Consensus 433 ~~~~~~-~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-p~-~~~~~~~l~~~~~~~g~ 493 (647)
++++++ ..-|+.. ..--+...-.+.|..+.|..++....++- |. +...+...-..=.+.|+
T Consensus 643 ~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 643 EIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 222222 1112211 11122222345566666666666555543 32 33444444444455555
No 59
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.31 E-value=2.1e-07 Score=93.79 Aligned_cols=490 Identities=13% Similarity=0.109 Sum_probs=279.9
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHHCC-CCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHHHHH
Q 006388 7 VSWNLLISGHASHGSVNDAVKVYNLMLKDG-LGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSPLVD 85 (647)
Q Consensus 7 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 85 (647)
..|-..+....++|+...-...|++.++.= + .--...|...++.....+-.+.+..++++-++.. +..-+-.|.
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpv-tqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie 177 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPV-TQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIE 177 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCch-HhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHH
Confidence 457777777788888888888888777642 2 2234467778887778888888888888877653 233566677
Q ss_pred HHHhcCChHHHHHHhccCCCC----------CchHHHHHHHHHHhcCCh---HHHHHHhhcCCCC--C--eehHHHHHHH
Q 006388 86 MYAKLGLIYDAKRGFDELPEK----------NIVMYNTMITGLLRRGLV---EESRRLFRGMKDK--D--SISWTTMITG 148 (647)
Q Consensus 86 ~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~--~--~~~~~~li~~ 148 (647)
.+++.+++++|.+.+..+... +--.|..+-...++.-+. -....+++.+..+ | ...|++|.+-
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 788888888888888777642 223455544444433222 2334445555443 2 3468999999
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCC----------------------hHHHHHHHHHHHHcCC-
Q 006388 149 LMQNGLEREAIDLFREMRLEGLAMDQFTFGSVLTACGGLLA----------------------LEEGKQIHAFIIRNDH- 205 (647)
Q Consensus 149 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~----------------------~~~a~~~~~~~~~~g~- 205 (647)
|.+.|.+++|.++|++..+.- .....|..+.++|+.-.. ++....-++.+.....
T Consensus 258 YIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 999999999999998877642 244456667777653211 1111122222222110
Q ss_pred ----------CCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-------CC--ChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 006388 206 ----------KDNVFVGSALVDMYCKCKSIKYAESVFRTMA-------WK--NVVSWTAMLVGYGQNGCSEEAVKIFCNM 266 (647)
Q Consensus 206 ----------~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m 266 (647)
+.++..|..-+..| .|+..+-...|.+.. .+ -...|..+...|-.+|+.+.|..+|++.
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 01111111111111 122222233332221 11 1134666777777777777777777766
Q ss_pred HHCCCCCC---HHHHHHHHHHHhccCChHHHHHHHHHHHHhC-----------CCc------chhHHHHHHHHHHhcCCH
Q 006388 267 QRNGIEPD---DFTLGSVISSCANLASLEEGTQFHGRSLVTG-----------LIS------FITVSNALVTFYGKCGNI 326 (647)
Q Consensus 267 ~~~g~~p~---~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~-----------~~~------~~~~~~~li~~~~~~g~~ 326 (647)
.+-..+-- ..+|..-...=.+..+++.|..+.+...... .++ +..+|..+++.--..|-+
T Consensus 414 ~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf 493 (835)
T KOG2047|consen 414 TKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF 493 (835)
T ss_pred hcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH
Confidence 65432111 1122222222223445556666555543211 111 123444455555566667
Q ss_pred HHHHHHHhhcCCCChhhHHHHH---HHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHh---cCCcHHHHHHHH
Q 006388 327 EDSHRLFNEMNVRDEVSWTALV---SGYAKFGKANETIDLFEKMLSHGLKPDEV-TLIGVLSACS---RAGLVEKGRHYF 399 (647)
Q Consensus 327 ~~A~~~~~~~~~~d~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~---~~g~~~~a~~~~ 399 (647)
+....+++++..--+.|=..++ .-+-.+.-++++.++|++-+..=-.|+.. .|+..|.-+. ....++.|+.+|
T Consensus 494 estk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF 573 (835)
T KOG2047|consen 494 ESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF 573 (835)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 7777777666532221111111 11234555777777777765543345554 5555554433 244789999999
Q ss_pred HHHHHhcCCCcChH--HHHHHHHHHHHcCCHHHHHHHHHhC--CCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 006388 400 EIMVKEYGIRPIHD--HYTCMIDILSRAGRLEEAKSFINKM--PFPPD--AIGWATLLSSCRIHGNVEIGKWAAESLLEL 473 (647)
Q Consensus 400 ~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 473 (647)
+...+ +.+|... .|-.....=.+-|....|.++++++ .+++. ...|+..|.--...=-+.....+++++++.
T Consensus 574 EqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~ 651 (835)
T KOG2047|consen 574 EQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES 651 (835)
T ss_pred HHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh
Confidence 99987 7776532 2333333334668899999999998 34443 456777776544433355677889999998
Q ss_pred CCCCch--hHHHHHHhhhhCCChhHHHHHHHHHHhC
Q 006388 474 DPYNPA--SYVLLSSIYASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 474 ~p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 507 (647)
-|++.. ...-.+..=.+.|..+.|+.++..-.+-
T Consensus 652 Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 652 LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 886432 3345567778999999999999876543
No 60
>PF13041 PPR_2: PPR repeat family
Probab=99.29 E-value=5e-12 Score=86.81 Aligned_cols=50 Identities=28% Similarity=0.446 Sum_probs=48.1
Q ss_pred CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhC
Q 006388 4 HDGVSWNLLISGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSS 54 (647)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~ 54 (647)
||+++||++|++|++.|++++|+++|++|.+.|+ +||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~-~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGI-KPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHcC
Confidence 8999999999999999999999999999999999 9999999999999864
No 61
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=1.4e-08 Score=94.84 Aligned_cols=469 Identities=11% Similarity=0.094 Sum_probs=259.5
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHH-HHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhcC
Q 006388 13 ISGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTM-LIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSPLVDMYAKLG 91 (647)
Q Consensus 13 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 91 (647)
+.-+..+.++..|+.+++--...+- -.......- ..++...|++++|...+..+.... .++...+..|.-.+.-.|
T Consensus 29 Ledfls~rDytGAislLefk~~~~~--EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDR--EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccch--hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHH
Confidence 4556678899999999987775542 222233333 344568899999999998887754 566666777777777788
Q ss_pred ChHHHHHHhccCCCCCchHHHHHHHHHHhcCChHHHHHHhhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 006388 92 LIYDAKRGFDELPEKNIVMYNTMITGLLRRGLVEESRRLFRGMKDKDSISWTTMITGLMQNGLEREAIDLFREMRLEGLA 171 (647)
Q Consensus 92 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 171 (647)
.+.+|..+-...++. .-.-..|....-+.++-++-..+-+.+.. ...---+|.+.....-.+.+|+++|.+....+
T Consensus 106 ~Y~eA~~~~~ka~k~-pL~~RLlfhlahklndEk~~~~fh~~LqD-~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn-- 181 (557)
T KOG3785|consen 106 QYIEAKSIAEKAPKT-PLCIRLLFHLAHKLNDEKRILTFHSSLQD-TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN-- 181 (557)
T ss_pred HHHHHHHHHhhCCCC-hHHHHHHHHHHHHhCcHHHHHHHHHHHhh-hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--
Confidence 999999887776532 22222333444455555544444433332 22222334444444456788888888877643
Q ss_pred CChhhHHHHHH-HHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc--CCHHHH--HHHHhcCCCCChhHHHHH
Q 006388 172 MDQFTFGSVLT-ACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKC--KSIKYA--ESVFRTMAWKNVVSWTAM 246 (647)
Q Consensus 172 pd~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~--g~~~~A--~~~~~~~~~~~~~~~~~l 246 (647)
|+-...+.-+. .|.+..-++-+.+++..-++. ++.+...-|.......+. |+..++ .++-+...+. |. .
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~~-f 255 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----YP-F 255 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----ch-h
Confidence 44444444333 445677777777777766654 233344444433333322 322221 2222222111 10 1
Q ss_pred HHHHHhc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhH-----HHHH
Q 006388 247 LVGYGQN-----GCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITV-----SNAL 316 (647)
Q Consensus 247 i~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~l 316 (647)
+.-.++. .+-+.|++++-.+.+. -|.. -..++--+.+.+++.+|..+...+.- ..|...+ +.++
T Consensus 256 ~~~l~rHNLVvFrngEgALqVLP~L~~~--IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aal 329 (557)
T KOG3785|consen 256 IEYLCRHNLVVFRNGEGALQVLPSLMKH--IPEA--RLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAAL 329 (557)
T ss_pred HHHHHHcCeEEEeCCccHHHhchHHHhh--ChHh--hhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHh
Confidence 1111111 2234455554443321 1211 11222234445555554444322210 0111111 1122
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCC----C-hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCc
Q 006388 317 VTFYGKCGNIEDSHRLFNEMNVR----D-EVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGL 391 (647)
Q Consensus 317 i~~~~~~g~~~~A~~~~~~~~~~----d-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 391 (647)
.+-......+.-|.+.|+-.... | +.--.+|.+.+.-..++++++-.+.....- +.-|...--.+..|.+..|+
T Consensus 330 GQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgn 408 (557)
T KOG3785|consen 330 GQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGN 408 (557)
T ss_pred hhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcC
Confidence 22222223345566666554322 2 233455666666677788888777777664 33344444456778888899
Q ss_pred HHHHHHHHHHHHHhcCCCcChHHH-HHHHHHHHHcCCHHHHHHHHHhCCCCCChhhHHH-HHHHHHhcCChhHHHHHHHH
Q 006388 392 VEKGRHYFEIMVKEYGIRPIHDHY-TCMIDILSRAGRLEEAKSFINKMPFPPDAIGWAT-LLSSCRIHGNVEIGKWAAES 469 (647)
Q Consensus 392 ~~~a~~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~ 469 (647)
+.+|.++|-.+... .+ .+..+| ..|...|.+++..+-|++++-++..+.+..+... +.+-|.+.+++--|-++|+.
T Consensus 409 y~eaEelf~~is~~-~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~ 486 (557)
T KOG3785|consen 409 YVEAEELFIRISGP-EI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDE 486 (557)
T ss_pred hHHHHHHHhhhcCh-hh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 99999988766421 22 234444 4566788899999999999988864444444444 44568888999889999998
Q ss_pred HhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhCCCccCC
Q 006388 470 LLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREKGVRKDP 513 (647)
Q Consensus 470 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 513 (647)
+..++| +|..| .|+--....+|..+....-+|.|
T Consensus 487 lE~lDP-~pEnW---------eGKRGACaG~f~~l~~~~~~~~p 520 (557)
T KOG3785|consen 487 LEILDP-TPENW---------EGKRGACAGLFRQLANHKTDPIP 520 (557)
T ss_pred HHccCC-Ccccc---------CCccchHHHHHHHHHcCCCCCCc
Confidence 888888 34443 35555556677766655444444
No 62
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.27 E-value=1e-08 Score=97.70 Aligned_cols=282 Identities=11% Similarity=0.027 Sum_probs=179.9
Q ss_pred CCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCC----CchHHHHHHHHHHhcCChHHHHHH
Q 006388 55 RRCVDLGRQIHGHILKFGFGSYVFVGSPLVDMYAKLGLIYDAKRGFDELPEK----NIVMYNTMITGLLRRGLVEESRRL 130 (647)
Q Consensus 55 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~ 130 (647)
.|++.+|.+....-.+.+-.| ...|..-+.+--..|+.+.|-+++.+..++ +...+-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 477777777777766665332 233334445555667777777777776643 233444555556666666666655
Q ss_pred hhcCC---CCCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCC
Q 006388 131 FRGMK---DKDSISWTTMITGLMQNGLEREAIDLFREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKD 207 (647)
Q Consensus 131 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 207 (647)
.++.. .+++.......+.|.+.|++.+...++..|.+.|+--|+.. .++
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~~l----------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------ARL----------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------HHH-----------
Confidence 54433 34666777777888888888888888888887775433211 111
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006388 208 NVFVGSALVDMYCKCKSIKYAESVFRTMAW---KNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISS 284 (647)
Q Consensus 208 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 284 (647)
...+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++..+..+.+..|+.. .+-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHh
Confidence 112344444444444444444555666553 256666677788888889999998888888887766622 2234
Q ss_pred HhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC--CCChhhHHHHHHHHHHcCChHHHHH
Q 006388 285 CANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMN--VRDEVSWTALVSGYAKFGKANETID 362 (647)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~d~~~~~~li~~~~~~g~~~~A~~ 362 (647)
+.+.++.+.-.+..+.-.+.. +.++..+.+|...|.+.+.+.+|...|+... .++..+|+.+..+|.+.|+..+|.+
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHH
Confidence 456666666655555554432 3344677788888888888888888887655 5677778888888888888888888
Q ss_pred HHHHHHHC
Q 006388 363 LFEKMLSH 370 (647)
Q Consensus 363 ~~~~m~~~ 370 (647)
.+++....
T Consensus 383 ~r~e~L~~ 390 (400)
T COG3071 383 VRREALLL 390 (400)
T ss_pred HHHHHHHH
Confidence 77776543
No 63
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.25 E-value=2.3e-09 Score=109.53 Aligned_cols=230 Identities=17% Similarity=0.218 Sum_probs=165.6
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHh-----C-CCcch-hHHHHHHHHHHhcCCHHHHHHHHhhcC-------CC-C
Q 006388 276 FTLGSVISSCANLASLEEGTQFHGRSLVT-----G-LISFI-TVSNALVTFYGKCGNIEDSHRLFNEMN-------VR-D 340 (647)
Q Consensus 276 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~-d 340 (647)
.|...+...|...|+++.|..++...++. | ..+.+ ...+.+..+|...+++++|..+|+++. .+ +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555667777777777777777766554 1 12222 223446777888888888887777664 11 1
Q ss_pred ---hhhHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCC-CHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHhcC--C
Q 006388 341 ---EVSWTALVSGYAKFGKANETIDLFEKMLS-----HGLKP-DEV-TLIGVLSACSRAGLVEKGRHYFEIMVKEYG--I 408 (647)
Q Consensus 341 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p-~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~ 408 (647)
..+++.|..+|.+.|++++|..++++..+ .|..+ ... -++.+...|...+.+++|..+++...+.+. +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 34567777778888888887777766543 22222 222 566677788999999999999987766543 2
Q ss_pred CcC----hHHHHHHHHHHHHcCCHHHHHHHHHhC-------C--CCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHhc--
Q 006388 409 RPI----HDHYTCMIDILSRAGRLEEAKSFINKM-------P--FPPD-AIGWATLLSSCRIHGNVEIGKWAAESLLE-- 472 (647)
Q Consensus 409 ~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-------~--~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-- 472 (647)
.++ ..+++.|..+|...|++++|.++++++ . ..+. ...++.|...|.+.+++++|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 367999999999999999999999877 1 2232 55678899999999999999999887654
Q ss_pred --cCCCC---chhHHHHHHhhhhCCChhHHHHHHHHHH
Q 006388 473 --LDPYN---PASYVLLSSIYASKGKWDHVSQLRRTMR 505 (647)
Q Consensus 473 --~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 505 (647)
.+|+. ..+|..|+.+|...|++++|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34543 4678899999999999999999998875
No 64
>PF13041 PPR_2: PPR repeat family
Probab=99.25 E-value=2.1e-11 Score=83.64 Aligned_cols=50 Identities=36% Similarity=0.639 Sum_probs=47.0
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 006388 339 RDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSR 388 (647)
Q Consensus 339 ~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 388 (647)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999874
No 65
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1e-07 Score=91.09 Aligned_cols=305 Identities=13% Similarity=0.023 Sum_probs=214.6
Q ss_pred CCCChhhHHHHHHHHh--cCCChHHHHHHHHHHHH-cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHH
Q 006388 170 LAMDQFTFGSVLTACG--GLLALEEGKQIHAFIIR-NDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMAWKNVVSWTAM 246 (647)
Q Consensus 170 ~~pd~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l 246 (647)
+.|...+...-+.+++ ..++-..+.+.+..+.+ .-++.|+.....+.+.|...|+.++|...|++...-|+.+...|
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M 269 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM 269 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH
Confidence 3344444444455443 33444444444444433 34678889999999999999999999999998776555443332
Q ss_pred ---HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhc
Q 006388 247 ---LVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKC 323 (647)
Q Consensus 247 ---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 323 (647)
.-.+.+.|+.++...+...+.... +-+...|..-+...-..++++.|..+-+..++.+ +.+...+-.-...+...
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhc
Confidence 334567888888888877776532 1122222222233345567777777777776654 23344444445667778
Q ss_pred CCHHHHHHHHhhcC--C-CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHh-cCCcHHHHHHH
Q 006388 324 GNIEDSHRLFNEMN--V-RDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVL-SACS-RAGLVEKGRHY 398 (647)
Q Consensus 324 g~~~~A~~~~~~~~--~-~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~~~ 398 (647)
|+.++|.-.|+... . -+..+|.-|+.+|...|++.+|..+-+..... +..+..+++.+. ..|. ....-++|..+
T Consensus 348 ~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred cchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHH
Confidence 99999999998765 3 48889999999999999999999887776553 344555655552 3333 34456788888
Q ss_pred HHHHHHhcCCCcC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 006388 399 FEIMVKEYGIRPI-HDHYTCMIDILSRAGRLEEAKSFINKM-PFPPDAIGWATLLSSCRIHGNVEIGKWAAESLLELDPY 476 (647)
Q Consensus 399 ~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 476 (647)
++... .+.|+ ....+.+..++.+.|..+++..++++. ...||....+.|...++..+.+.+|...|..++.++|+
T Consensus 427 ~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 427 AEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 88765 45665 456677888999999999999999887 66789999999999999999999999999999999998
Q ss_pred Cchh
Q 006388 477 NPAS 480 (647)
Q Consensus 477 ~~~~ 480 (647)
+..+
T Consensus 504 ~~~s 507 (564)
T KOG1174|consen 504 SKRT 507 (564)
T ss_pred chHH
Confidence 7533
No 66
>PRK12370 invasion protein regulator; Provisional
Probab=99.22 E-value=3.4e-09 Score=113.72 Aligned_cols=260 Identities=11% Similarity=0.024 Sum_probs=187.9
Q ss_pred ChhHHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHh---------ccCChHHHHHHHHHHHH
Q 006388 239 NVVSWTAMLVGYGQ-----NGCSEEAVKIFCNMQRNGIEPDDF-TLGSVISSCA---------NLASLEEGTQFHGRSLV 303 (647)
Q Consensus 239 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~---------~~~~~~~a~~~~~~~~~ 303 (647)
+..+|...+.+-.. .+..++|+.+|++..+. .|+.. .+..+..++. ..++.++|...++++++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 45566666665322 23467899999998875 56543 3433333322 23457899999999888
Q ss_pred hCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC--CC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HH
Q 006388 304 TGLISFITVSNALVTFYGKCGNIEDSHRLFNEMN--VR-DEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEV-TL 379 (647)
Q Consensus 304 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~ 379 (647)
.+ +.+...+..+...+...|++++|...|++.. .| +...|..+...+...|++++|+..+++..+. .|+.. .+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 76 5567788888999999999999999999876 33 5668888999999999999999999999985 45533 33
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhcCCCc-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHh
Q 006388 380 IGVLSACSRAGLVEKGRHYFEIMVKEYGIRP-IHDHYTCMIDILSRAGRLEEAKSFINKM-PFPPD-AIGWATLLSSCRI 456 (647)
Q Consensus 380 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~ 456 (647)
..++..+...|++++|...+++..+. ..| +...+..+...|...|++++|.+.+.++ +..|+ ...++.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 33444566689999999999988753 234 4556778888999999999999999987 44555 4455566666677
Q ss_pred cCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhCC
Q 006388 457 HGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREKG 508 (647)
Q Consensus 457 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 508 (647)
.| +.|...++++.+..-..+..+..+..+|+-.|+-+.+..+ +++.+.|
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 77 4788878877764433333334477888888998888777 7777654
No 67
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=2.5e-07 Score=92.09 Aligned_cols=276 Identities=13% Similarity=0.069 Sum_probs=211.1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh---hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006388 206 KDNVFVGSALVDMYCKCKSIKYAESVFRTMAWKNV---VSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVI 282 (647)
Q Consensus 206 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 282 (647)
..+..+.....+-+...+++.+..++++.+.+.|+ ..+..-|..+...|+..+-..+=.+|.+. .+-...+|-++.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg 319 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVG 319 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHH
Confidence 44556666777778888999999999998876554 45566677889999999888888888876 344568898988
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHH
Q 006388 283 SSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMN---VRDEVSWTALVSGYAKFGKANE 359 (647)
Q Consensus 283 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~ 359 (647)
--|...|+.++|++.+......+ +.-...|-.+...|+-.|.-++|...+.... ......+--+.--|.+.++.+-
T Consensus 320 ~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHH
Confidence 88888899999999999877654 3345678888999999999999888776543 1122223334556788899999
Q ss_pred HHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHhc-CCC----cChHHHHHHHHHHHHcCCHHHHHH
Q 006388 360 TIDLFEKMLSHGLKPDEV-TLIGVLSACSRAGLVEKGRHYFEIMVKEY-GIR----PIHDHYTCMIDILSRAGRLEEAKS 433 (647)
Q Consensus 360 A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~----p~~~~~~~li~~~~~~g~~~~A~~ 433 (647)
|.+.|.+... +.|+.. ..+-+.-..-+.+.+.+|..+|+...... .+. .-..+++.|..+|.+.+.+++|+.
T Consensus 399 Ae~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 399 AEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 9999998876 566554 55555545556789999999998876211 111 134568889999999999999999
Q ss_pred HHHhC-C-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHH
Q 006388 434 FINKM-P-FPPDAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLS 485 (647)
Q Consensus 434 ~~~~~-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 485 (647)
.+++. . .+.+..++.++.-.+...|+++.|...|.+++.+.|+|..+-..|.
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 99987 3 3447889999999999999999999999999999998865544443
No 68
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=9.1e-07 Score=93.43 Aligned_cols=465 Identities=13% Similarity=0.124 Sum_probs=268.1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCC--CCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHHHHHH
Q 006388 9 WNLLISGHASHGSVNDAVKVYNLMLKDG--LGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSPLVDM 86 (647)
Q Consensus 9 ~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 86 (647)
|-.+.+.|.++|-+..|++.|.+..... +...+... .--+-.+...-.++.+.+.+..|+..++..+..+...+..-
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~-pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLN-PEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCC-HHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 7788899999999999998887765321 00000000 11122344445678888888889888888888888777777
Q ss_pred HHhcCChHHHHHHhccCCC---------------CCchHHHHHHHHHHhcCChHHHHHHhhcCCC---------------
Q 006388 87 YAKLGLIYDAKRGFDELPE---------------KNIVMYNTMITGLLRRGLVEESRRLFRGMKD--------------- 136 (647)
Q Consensus 87 ~~~~g~~~~A~~~~~~~~~---------------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------------- 136 (647)
|...=-.+.-.++|+.... .|....-..|.+.++.|++.+.+++.++-.-
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL 767 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKL 767 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccc
Confidence 8777677777788877652 4555666788899999999988888765321
Q ss_pred ----C-----C-------eehH------HHHHHHHHhCCChhHHHHHHHHHHHCCCCC-----------ChhhHHHHHHH
Q 006388 137 ----K-----D-------SISW------TTMITGLMQNGLEREAIDLFREMRLEGLAM-----------DQFTFGSVLTA 183 (647)
Q Consensus 137 ----~-----~-------~~~~------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----------d~~t~~~ll~~ 183 (647)
| | .+.| --.|..|.+.=++...-.+...+......- ..+....+..-
T Consensus 768 ~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~E 847 (1666)
T KOG0985|consen 768 TDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEE 847 (1666)
T ss_pred cccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHH
Confidence 1 1 1111 012233333322222222222111111000 00111122223
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH-------------------------------------
Q 006388 184 CGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIK------------------------------------- 226 (647)
Q Consensus 184 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~------------------------------------- 226 (647)
+-+.+++..-...++..+..| ..|..++|+|...|...++-.
T Consensus 848 vEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD 926 (1666)
T KOG0985|consen 848 VEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCD 926 (1666)
T ss_pred HHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCc
Confidence 334444555555555556666 346667777777666544211
Q ss_pred ---------------------------HHHHHHhc-----------CC------CCChhHHHHHHHHHHhcCChhHHHHH
Q 006388 227 ---------------------------YAESVFRT-----------MA------WKNVVSWTAMLVGYGQNGCSEEAVKI 262 (647)
Q Consensus 227 ---------------------------~A~~~~~~-----------~~------~~~~~~~~~li~~~~~~g~~~~A~~~ 262 (647)
--.+++.+ +. ..|+..-+.-+.++...+-+.+-+++
T Consensus 927 ~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIEL 1006 (1666)
T KOG0985|consen 927 LELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIEL 1006 (1666)
T ss_pred HHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHH
Confidence 11111100 00 01233333444555555555566666
Q ss_pred HHHHHHCCCCC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC---
Q 006388 263 FCNMQRNGIEP--DDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMN--- 337 (647)
Q Consensus 263 ~~~m~~~g~~p--~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--- 337 (647)
++++.-..-.. +...-+.++-. +-..+.....++..++-..+ .|+ +.......+-+++|..+|+...
T Consensus 1007 LEKIvL~~S~Fse~~nLQnLLiLt-Aikad~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEAF~ifkkf~~n~ 1078 (1666)
T KOG0985|consen 1007 LEKIVLDNSVFSENRNLQNLLILT-AIKADRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEAFAIFKKFDMNV 1078 (1666)
T ss_pred HHHHhcCCcccccchhhhhhHHHH-HhhcChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHHHHHHHHhcccH
Confidence 65554321000 00111111111 11111111111111111111 000 1111122233344444443321
Q ss_pred ----------------------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHH
Q 006388 338 ----------------------VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKG 395 (647)
Q Consensus 338 ----------------------~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 395 (647)
-..+..|..+..+-.+.|...+|++-|-+. -|...|..++..+++.|.+++-
T Consensus 1079 ~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edL 1152 (1666)
T KOG0985|consen 1079 SAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDL 1152 (1666)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHH
Confidence 113567999999999999999999887542 3667899999999999999999
Q ss_pred HHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 006388 396 RHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKMPFPPDAIGWATLLSSCRIHGNVEIGKWAAESLLELDP 475 (647)
Q Consensus 396 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 475 (647)
.+++....++ .-+|..+ +.|+-+|++.+++.|-.+++.. |+..-......-|...|.++.|.-++.
T Consensus 1153 v~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~g----pN~A~i~~vGdrcf~~~~y~aAkl~y~------- 1218 (1666)
T KOG0985|consen 1153 VKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIAG----PNVANIQQVGDRCFEEKMYEAAKLLYS------- 1218 (1666)
T ss_pred HHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhcC----CCchhHHHHhHHHhhhhhhHHHHHHHH-------
Confidence 9999877665 5666655 5789999999999998887753 787788889999999999999988886
Q ss_pred CCchhHHHHHHhhhhCCChhHHHHHHHHH
Q 006388 476 YNPASYVLLSSIYASKGKWDHVSQLRRTM 504 (647)
Q Consensus 476 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 504 (647)
+.+.|..|+..+...|.+..|...-++.
T Consensus 1219 -~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1219 -NVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred -HhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4467888888888889888887665543
No 69
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.13 E-value=2e-08 Score=95.37 Aligned_cols=199 Identities=15% Similarity=0.159 Sum_probs=107.3
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 006388 240 VVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTF 319 (647)
Q Consensus 240 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 319 (647)
...+..+...+...|++++|.+.|++..+.. +.+...+..+...+...|+++.|...+....+.. +.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~----------- 97 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PN----------- 97 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC-----------
Confidence 4456677777777777888777777776542 1223444444455555555555555555554432 12
Q ss_pred HHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcCCcHHHHHHH
Q 006388 320 YGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKP-DEVTLIGVLSACSRAGLVEKGRHY 398 (647)
Q Consensus 320 ~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~ 398 (647)
+...+..+...+...|++++|...|++.......| ....+..+..++...|++++|...
T Consensus 98 --------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 98 --------------------NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred --------------------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 23344444445555555555555555555432112 122344445555566666666666
Q ss_pred HHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 006388 399 FEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLEL 473 (647)
Q Consensus 399 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 473 (647)
++...+. .+.+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|+.+.|....+.+.+.
T Consensus 158 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 158 LTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 6655542 1223445556666666666666666666654 1122 3444555555566666666666666555443
No 70
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.3e-06 Score=83.64 Aligned_cols=261 Identities=11% Similarity=0.018 Sum_probs=186.0
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHH
Q 006388 238 KNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFT-LGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNAL 316 (647)
Q Consensus 238 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 316 (647)
.|+.....+...+...|+.++|+..|++.+.. .|+..+ .-...-.+.+.|+.+....+...+....- .+...|-.-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhh
Confidence 47778889999999999999999999988764 454432 11112233567777777777666654431 111112222
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcCCcH
Q 006388 317 VTFYGKCGNIEDSHRLFNEMNVR---DEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKP-DEVTLIGVLSACSRAGLV 392 (647)
Q Consensus 317 i~~~~~~g~~~~A~~~~~~~~~~---d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~ 392 (647)
........+++.|+.+-++.... ++..|-.-...+.+.|++++|.-.|+..+. +.| +...|..|+.+|...|.+
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchH
Confidence 23334456788888887776644 444454445678889999999999999887 455 455999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcChHHHHHHH-HHHH-HcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCChhHHHHHHH
Q 006388 393 EKGRHYFEIMVKEYGIRPIHDHYTCMI-DILS-RAGRLEEAKSFINKM-PFPPD-AIGWATLLSSCRIHGNVEIGKWAAE 468 (647)
Q Consensus 393 ~~a~~~~~~~~~~~~~~p~~~~~~~li-~~~~-~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~ 468 (647)
.+|.-.-+...+. +.-+..+.+.+. ..+. ...--++|.+++++. ..+|+ ....+.+...|...|..+.++.+++
T Consensus 385 kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 385 KEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 9998877766653 334455555442 2222 223357899999887 67787 5566777888899999999999999
Q ss_pred HHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 469 SLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 469 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
+.+...| |...++.|++++...+.+++|...|.....
T Consensus 463 ~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 463 KHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 9999888 558899999999999999999999987655
No 71
>PRK12370 invasion protein regulator; Provisional
Probab=99.11 E-value=8e-09 Score=110.85 Aligned_cols=242 Identities=11% Similarity=-0.005 Sum_probs=158.9
Q ss_pred CChHHHHHHHHHHHHhCCCCchhhHHHHHHHHH---------hcCChHHHHHHhccCCC---CCchHHHHHHHHHHhcCC
Q 006388 56 RCVDLGRQIHGHILKFGFGSYVFVGSPLVDMYA---------KLGLIYDAKRGFDELPE---KNIVMYNTMITGLLRRGL 123 (647)
Q Consensus 56 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 123 (647)
+++++|.+.+++.++.. +.+...+..+..+|. ..+++++|...+++..+ .+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 34567777777777664 233444555544433 22346777777776654 245567777777777888
Q ss_pred hHHHHHHhhcCCC--C-CeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh-hHHHHHHHHhcCCChHHHHHHHHH
Q 006388 124 VEESRRLFRGMKD--K-DSISWTTMITGLMQNGLEREAIDLFREMRLEGLAMDQF-TFGSVLTACGGLLALEEGKQIHAF 199 (647)
Q Consensus 124 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~~~~~~~~~~~a~~~~~~ 199 (647)
+++|...|++..+ | +...|..+...+...|++++|+..+++..+.. |+.. .+..++..+...|++++|...+..
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 8888888877654 3 34577888888999999999999999988754 4432 233344445667889999999888
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCH
Q 006388 200 IIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMAWK---NVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNG-IEPDD 275 (647)
Q Consensus 200 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~ 275 (647)
+++...+.+...+..+..+|...|+.++|...++++... +...++.+...|...| ++|...++.+.+.. ..|..
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~ 509 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNN 509 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcC
Confidence 877653445556777888899999999999999887643 3445666777777777 47777777765431 23333
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 006388 276 FTLGSVISSCANLASLEEGTQFHGRSLVTG 305 (647)
Q Consensus 276 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 305 (647)
..+..++ ++-.|+.+.+..+ +.+.+.+
T Consensus 510 ~~~~~~~--~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 510 PGLLPLV--LVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred chHHHHH--HHHHhhhHHHHHH-HHhhccc
Confidence 3333333 3345565655555 6666554
No 72
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.11 E-value=1.5e-08 Score=99.39 Aligned_cols=212 Identities=15% Similarity=0.112 Sum_probs=152.1
Q ss_pred CChHHHHHHHHHHHHhC-CCc--chhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHH
Q 006388 289 ASLEEGTQFHGRSLVTG-LIS--FITVSNALVTFYGKCGNIEDSHRLFNEMN---VRDEVSWTALVSGYAKFGKANETID 362 (647)
Q Consensus 289 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~ 362 (647)
+..+.+..-+.+++... ..| ....+..+...|.+.|+.++|...|++.. ..+...|+.+...+...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34556666666666432 222 24567778888999999999999998876 3367899999999999999999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC--C
Q 006388 363 LFEKMLSHGLKPD-EVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM--P 439 (647)
Q Consensus 363 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~ 439 (647)
.|++..+. .|+ ..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.+.+. .
T Consensus 120 ~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99999974 565 447788888889999999999999998754 454332222233445678899999999665 2
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHh-------ccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhCCC
Q 006388 440 FPPDAIGWATLLSSCRIHGNVEIGKWAAESLL-------ELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREKGV 509 (647)
Q Consensus 440 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 509 (647)
..|+...| .......|+...+ ..++.+. ++.|..+.+|..++.+|...|++++|...|++..+.+.
T Consensus 195 ~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 LDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 33333222 2233345555444 2444443 34556678999999999999999999999999887543
No 73
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.10 E-value=1.2e-06 Score=82.10 Aligned_cols=442 Identities=10% Similarity=0.028 Sum_probs=240.1
Q ss_pred HHhCCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCC---CCchHHHHHHHHHHhcCChHHH
Q 006388 51 MSSSRRCVDLGRQIHGHILKFGFGSYVFVGSPLVDMYAKLGLIYDAKRGFDELPE---KNIVMYNTMITGLLRRGLVEES 127 (647)
Q Consensus 51 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 127 (647)
-+....|+..|..+++.-...+-.....+-.=+..+|.+.|++++|..++..+.+ ++...|-.|.-.+.-.|.+.+|
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHH
Confidence 3445567777777777665444222222222344556677888888888776653 4555666666666677777777
Q ss_pred HHHhhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCC
Q 006388 128 RRLFRGMKDKDSISWTTMITGLMQNGLEREAIDLFREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKD 207 (647)
Q Consensus 128 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 207 (647)
..+-.+.++ ++..-..|...-.+.++-++-..+-+.+... .-|. .++.+.....-.+++|.+++..++..+ |
T Consensus 111 ~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~--~Edq---LSLAsvhYmR~HYQeAIdvYkrvL~dn--~ 182 (557)
T KOG3785|consen 111 KSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT--LEDQ---LSLASVHYMRMHYQEAIDVYKRVLQDN--P 182 (557)
T ss_pred HHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh--HHHH---HhHHHHHHHHHHHHHHHHHHHHHHhcC--h
Confidence 777666543 2222223334444455555555444444321 0111 122222222335666777776666542 2
Q ss_pred chhHHH-HHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006388 208 NVFVGS-ALVDMYCKCKSIKYAESVFRTMA---WKNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVIS 283 (647)
Q Consensus 208 ~~~~~~-~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 283 (647)
+-...| .+.-+|.|..-++-+.++++--. ..++++-|.......+.=....|.+-..++...+-..-++.--.+-.
T Consensus 183 ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rH 262 (557)
T KOG3785|consen 183 EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRH 262 (557)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHc
Confidence 222222 23335666665655555544332 12344455444444443333333333444443321110000000000
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCC-------
Q 006388 284 SCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFGK------- 356 (647)
Q Consensus 284 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~------- 356 (647)
-+.--.+-+.|.+++--+.+. .|. .--.|+-.|.+.+++.+|..+.+++....+.-|-.-.-.++..|+
T Consensus 263 NLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreH 338 (557)
T KOG3785|consen 263 NLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREH 338 (557)
T ss_pred CeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHH
Confidence 011123345555555444332 222 223466678999999999999998876555544433334455554
Q ss_pred hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHH
Q 006388 357 ANETIDLFEKMLSHGLKPDEV-TLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFI 435 (647)
Q Consensus 357 ~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 435 (647)
..-|.+.|+-.-+++..-|.+ --.++.+++.-..++++.+-+++++.. |-...|...+ .+..+++..|.+.+|.++|
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHH
Confidence 334445554443444333322 223344455555678899988888854 3444444444 4788999999999999999
Q ss_pred HhCC--CCCChhhHHHHHHHH-HhcCChhHHHHHHHHHhccC-CCCc-hhHHHHHHhhhhCCChhHHHHHHHHHHhCCC
Q 006388 436 NKMP--FPPDAIGWATLLSSC-RIHGNVEIGKWAAESLLELD-PYNP-ASYVLLSSIYASKGKWDHVSQLRRTMREKGV 509 (647)
Q Consensus 436 ~~~~--~~p~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~-p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 509 (647)
-+.. .-.|..+|.+++.-| .+++..+.|-.+ +++.+ |.+. .....+++-|.++|.+=-|.+.|+.+.....
T Consensus 417 ~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~---~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 417 IRISGPEIKNKILYKSMLARCYIRNKKPQLAWDM---MLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred hhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHH---HHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 8873 113566777666655 567787766544 44444 4333 3345677899999999999999998877443
No 74
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=1.2e-07 Score=92.47 Aligned_cols=340 Identities=14% Similarity=0.040 Sum_probs=207.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc-hhHHHHHHHHH
Q 006388 142 WTTMITGLMQNGLEREAIDLFREMRLEGLAMD-QFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDN-VFVGSALVDMY 219 (647)
Q Consensus 142 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y 219 (647)
+-..-.-|.++|.+++|++.|.+..+ ..|| ...|.....+|...|+++++.+--...++.. |+ +-.+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHH
Confidence 34455567888999999999999887 5677 5667777777788899988887777766653 33 33444455667
Q ss_pred HhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChhHHHHHH--------HHHHH-CC--CCCCHHHHHHHHHHHhcc
Q 006388 220 CKCKSIKYAESVFRTMAWKNVVSWTAMLVGYGQNGCSEEAVKIF--------CNMQR-NG--IEPDDFTLGSVISSCANL 288 (647)
Q Consensus 220 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~--------~~m~~-~g--~~p~~~t~~~ll~a~~~~ 288 (647)
-..|++++|+.= +|-.++..+|....-.--+.+++ .+-.+ .+ +-|......+....+-..
T Consensus 194 E~lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 194 EQLGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred HhhccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 777777777531 12222333332222222222222 22222 11 334444444444333210
Q ss_pred CChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhc-CCHHHHHHHHhhc-------CCC---Ch------hhHHHHHHHH
Q 006388 289 ASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKC-GNIEDSHRLFNEM-------NVR---DE------VSWTALVSGY 351 (647)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~-------~~~---d~------~~~~~li~~~ 351 (647)
-.. .+...+-..|...-..+-..+... ..+..|...+.+- ... |. .+.+.-..-+
T Consensus 265 ~~~--------~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~ 336 (606)
T KOG0547|consen 265 PKP--------LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFH 336 (606)
T ss_pred ccc--------cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhh
Confidence 000 000000001111111111111111 1122222222211 111 11 1111112223
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCc-ChHHHHHHHHHHHHcCCHHH
Q 006388 352 AKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRP-IHDHYTCMIDILSRAGRLEE 430 (647)
Q Consensus 352 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~ 430 (647)
.-.|+.-.|..-|+..+.....++.. |.-+..+|....+.++.+..|+...+ +.| ++.+|-.-..++.-.+++++
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~---ldp~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAED---LDPENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHh---cCCCCCchhHhHHHHHHHHHHHHH
Confidence 45688889999999998865444443 77777789999999999999998874 333 45677777777888889999
Q ss_pred HHHHHHhC-CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 431 AKSFINKM-PFPPD-AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 431 A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
|..=|++. .+.|+ +..+-.+.-+..+.+.+++++..|+...+.-|..+..|...+.++...++++.|.+.++...+
T Consensus 413 A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 413 AIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 99999988 56665 666777777777788999999999999999999999999999999999999999999998876
No 75
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.09 E-value=6.4e-09 Score=96.03 Aligned_cols=229 Identities=14% Similarity=0.093 Sum_probs=153.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhc
Q 006388 244 TAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKC 323 (647)
Q Consensus 244 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 323 (647)
+.|..+|.+.|.+.+|.+-|+.-.+. .|-..||..+-.+|.+..+++.|..++.+-++. ++.++....-..+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45667777777777777777766654 455556666666666666666666666655543 233444444455555556
Q ss_pred CCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHH
Q 006388 324 GNIEDSHRLFNEMNV---RDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFE 400 (647)
Q Consensus 324 g~~~~A~~~~~~~~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 400 (647)
++.++|.++++...+ .++.+..++..+|.-.++++-|+..|+++++.|+. +...|..+.-+|.-.+++|-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 666666666665542 24445555556666677777777777777776643 44556666666666666666655555
Q ss_pred HHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchh
Q 006388 401 IMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKMPFPPDAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPAS 480 (647)
Q Consensus 401 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 480 (647)
+.... .-+.++ -..+|-.|.......||+..|.+.|+-++..+|++..+
T Consensus 383 RAlst-------------------at~~~~------------aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 383 RALST-------------------ATQPGQ------------AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred HHHhh-------------------ccCcch------------hhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 44321 111111 24567777777778899999999999999999999999
Q ss_pred HHHHHHhhhhCCChhHHHHHHHHHHhC
Q 006388 481 YVLLSSIYASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 481 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 507 (647)
++.|+-.-.+.|++++|+.+++..++.
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 999999999999999999999987764
No 76
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.07 E-value=2.7e-06 Score=88.01 Aligned_cols=456 Identities=14% Similarity=0.079 Sum_probs=281.0
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHh---CCCChHHH-------------------HHHH----HHHH
Q 006388 16 HASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSS---SRRCVDLG-------------------RQIH----GHIL 69 (647)
Q Consensus 16 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~---~~~~~~~a-------------------~~~~----~~~~ 69 (647)
+.+.+.+.+++.-+......+. +-+..++..+...+. ..++.++. .... .++.
T Consensus 237 w~~~~~~~~~i~s~~~~l~~~w-~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r 315 (799)
T KOG4162|consen 237 WKKLSGPKEAIKSYRRALLRSW-SLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLR 315 (799)
T ss_pred hcCCCCchHHHHhhhHHhhccc-ccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHH
Confidence 4456777778887777777766 666666665544332 23333333 2211 2222
Q ss_pred HhCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCC---CCchHHHHHHHHHHhcCChHHHHHHhhcCCCCC--e--eh-
Q 006388 70 KFGFGSYVFVGSPLVDMYAKLGLIYDAKRGFDELPE---KNIVMYNTMITGLLRRGLVEESRRLFRGMKDKD--S--IS- 141 (647)
Q Consensus 70 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~--~~- 141 (647)
...+.-|+.+|..|.-+..++|+++.+.+.|++... .....|+.+-..|.-.|.-..|..+++....+. + .+
T Consensus 316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 234556888899999999999999999999998764 345679999999999999999999988765432 2 22
Q ss_pred HHHHHHHHHh-CCChhHHHHHHHHHHHC--CCC--CChhhHHHHHHHHhcC----C-------ChHHHHHHHHHHHHcCC
Q 006388 142 WTTMITGLMQ-NGLEREAIDLFREMRLE--GLA--MDQFTFGSVLTACGGL----L-------ALEEGKQIHAFIIRNDH 205 (647)
Q Consensus 142 ~~~li~~~~~-~g~~~~A~~~~~~m~~~--g~~--pd~~t~~~ll~~~~~~----~-------~~~~a~~~~~~~~~~g~ 205 (647)
+-..-..|.+ .+..+++++.-.+.... +.. .....|..+.-+|... . ...++.+.++..++.+.
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 2222233333 46777777777776652 111 1222333333333211 1 13456677777777663
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcCC----CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHH
Q 006388 206 KDNVFVGSALVDMYCKCKSIKYAESVFRTMA----WKNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPD-DFTLGS 280 (647)
Q Consensus 206 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ 280 (647)
. |..+.-.|.--|+..++++.|.+..++.. ..+...|..+.-.+...+++.+|+.+.+..... -|+ ......
T Consensus 476 ~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--~~~N~~l~~~ 552 (799)
T KOG4162|consen 476 T-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--FGDNHVLMDG 552 (799)
T ss_pred C-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hhhhhhhchh
Confidence 2 22232334456777888998888777654 347889999999999999999999998876553 111 110000
Q ss_pred HHHHHhccCChHHHHHHHH-----------------HHHH----hCC-------CcchhHHHHHHHHHH---hcCCHHHH
Q 006388 281 VISSCANLASLEEGTQFHG-----------------RSLV----TGL-------ISFITVSNALVTFYG---KCGNIEDS 329 (647)
Q Consensus 281 ll~a~~~~~~~~~a~~~~~-----------------~~~~----~~~-------~~~~~~~~~li~~~~---~~g~~~~A 329 (647)
-+..-...++.+++..... +... .|+ .....++..+..... +.-..+..
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~ 632 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK 632 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc
Confidence 1111111223332222111 1111 111 111222222222221 11111111
Q ss_pred HHHHhhcCCCC------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 006388 330 HRLFNEMNVRD------EVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMV 403 (647)
Q Consensus 330 ~~~~~~~~~~d------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 403 (647)
+..+...+.++ ...|......+.+.++.++|...+.+.... ..-....|......+...|...+|.+.|....
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 22222222333 234666777888899999999888887663 22233355555566777899999999998775
Q ss_pred HhcCCCcC-hHHHHHHHHHHHHcCCHHHHHH--HHHhC-CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 006388 404 KEYGIRPI-HDHYTCMIDILSRAGRLEEAKS--FINKM-PFPPD-AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNP 478 (647)
Q Consensus 404 ~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 478 (647)
.+.|+ +....++..++.+.|+..-|.. ++..+ .+.|+ ...|-.|...+.+.|+.++|...|+.+.++++.+|
T Consensus 712 ---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 712 ---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred ---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 55665 5788999999999998777766 77777 66674 88999999999999999999999999999988766
Q ss_pred h
Q 006388 479 A 479 (647)
Q Consensus 479 ~ 479 (647)
.
T Consensus 789 V 789 (799)
T KOG4162|consen 789 V 789 (799)
T ss_pred c
Confidence 4
No 77
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.04 E-value=3e-06 Score=88.10 Aligned_cols=406 Identities=15% Similarity=0.114 Sum_probs=224.1
Q ss_pred HHhcCChHHHHHHhccCCC--CCch-HHHHHHHHHHhcCChHHHHHHhhcCCCC--Ceeh-HHHHHHHHHh-----CCCh
Q 006388 87 YAKLGLIYDAKRGFDELPE--KNIV-MYNTMITGLLRRGLVEESRRLFRGMKDK--DSIS-WTTMITGLMQ-----NGLE 155 (647)
Q Consensus 87 ~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~-~~~li~~~~~-----~g~~ 155 (647)
+...|++++|.+.++.-.. .|.. ........+.+.|+.++|..++..+.++ +... |..+..+... ....
T Consensus 14 l~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~ 93 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDV 93 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccH
Confidence 3455555555555554332 2322 2334445555566666666666555543 2223 3333333311 1245
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 006388 156 REAIDLFREMRLEGLAMDQFTFGSVLTACGGLLAL-EEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRT 234 (647)
Q Consensus 156 ~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 234 (647)
+...++|+++...- |.......+.-.+.....+ ..+...+...++.|++ .+++.|-..|....+.+-...++..
T Consensus 94 ~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 94 EKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred HHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHH
Confidence 66677777765542 3333322222222221122 2344555556666644 3455566666655554444444443
Q ss_pred CC------------------CCCh--hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChHH
Q 006388 235 MA------------------WKNV--VSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDD-FTLGSVISSCANLASLEE 293 (647)
Q Consensus 235 ~~------------------~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~ 293 (647)
.. .|.. .++..+...|-..|++++|++++++.... .|+. ..|..-...+-+.|++.+
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 169 YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHH
Confidence 21 1122 23466677888999999999999988886 5764 566677788889999999
Q ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh----------hH--HHHHHHHHHcCChHHHH
Q 006388 294 GTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVRDEV----------SW--TALVSGYAKFGKANETI 361 (647)
Q Consensus 294 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~----------~~--~~li~~~~~~g~~~~A~ 361 (647)
|....+.....+ ..|..+-+-.+..+.++|++++|.+++.....++.. .| .....+|.+.|++..|+
T Consensus 247 Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 247 AAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred HHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999998876 557788888888999999999999998887755411 23 33467889999999988
Q ss_pred HHHHHHHHC--CCC---CCH----------HHHHHHHHHHhcCCc-------HHHHHHHHHHHHHhcCCCc---------
Q 006388 362 DLFEKMLSH--GLK---PDE----------VTLIGVLSACSRAGL-------VEKGRHYFEIMVKEYGIRP--------- 410 (647)
Q Consensus 362 ~~~~~m~~~--g~~---p~~----------~t~~~ll~a~~~~g~-------~~~a~~~~~~~~~~~~~~p--------- 410 (647)
.-|....+. .+. -|- .+|..++...-+... ...|.+++-.+-..-....
T Consensus 326 k~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~ 405 (517)
T PF12569_consen 326 KRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNE 405 (517)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccc
Confidence 877665442 112 222 233333332211111 1223333333321100000
Q ss_pred --ChHHHHHHHHHH---HHcCCHHHHHHHHH-----------hC----CCCCChhhHHHHHHHHHh-cCChhHHHHHHHH
Q 006388 411 --IHDHYTCMIDIL---SRAGRLEEAKSFIN-----------KM----PFPPDAIGWATLLSSCRI-HGNVEIGKWAAES 469 (647)
Q Consensus 411 --~~~~~~~li~~~---~~~g~~~~A~~~~~-----------~~----~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~ 469 (647)
+..--..+..-. .+...-+++...-. +. +.++|..... .-+.. ..-+++|.++++-
T Consensus 406 ~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~G---ekL~~t~dPLe~A~kfl~p 482 (517)
T PF12569_consen 406 NMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLG---EKLLKTEDPLEEAMKFLKP 482 (517)
T ss_pred cCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccH---HHHhcCCcHHHHHHHHHHH
Confidence 000000111000 11111122221110 00 1122221111 12222 3456889999999
Q ss_pred HhccCCCCchhHHHHHHhhhhCCChhHHHHHHHH
Q 006388 470 LLELDPYNPASYVLLSSIYASKGKWDHVSQLRRT 503 (647)
Q Consensus 470 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 503 (647)
+.+..|++..+|..-..+|.+.|++--|.+.+.+
T Consensus 483 L~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 483 LLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 9999999999999999999999999988887654
No 78
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.02 E-value=6.5e-08 Score=99.08 Aligned_cols=233 Identities=16% Similarity=0.195 Sum_probs=149.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCCC----------Chh-HHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCC
Q 006388 208 NVFVGSALVDMYCKCKSIKYAESVFRTMAWK----------NVV-SWTAMLVGYGQNGCSEEAVKIFCNMQRN---GIEP 273 (647)
Q Consensus 208 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----------~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p 273 (647)
-..+...|..+|...|+++.|..+|....+. .+. ..+.+...|...+++++|..+|+++..- ..-+
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3445556777888888888887777664321 111 2334555666677777777777666431 0001
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC----------CCCh-h
Q 006388 274 DDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMN----------VRDE-V 342 (647)
Q Consensus 274 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----------~~d~-~ 342 (647)
+. +.-..+++.|...|.+.|++++|...+++.. .+++ .
T Consensus 278 ~h-------------------------------~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 278 DH-------------------------------PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred CC-------------------------------HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 11 1112333444445555555555544444322 1122 2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHHhcCCcHHHHHHHHHHHHHhc-----CCCc
Q 006388 343 SWTALVSGYAKFGKANETIDLFEKMLSH---GLKPDE----VTLIGVLSACSRAGLVEKGRHYFEIMVKEY-----GIRP 410 (647)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p 410 (647)
.++.++..+...+++++|..++++..+. -+.++. .+++.+...|.+.|++++|.++|++++... +..+
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 3455666677778888888877765431 123333 378888899999999999999998886542 1122
Q ss_pred -ChHHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHh
Q 006388 411 -IHDHYTCMIDILSRAGRLEEAKSFINKM--------PFPPD-AIGWATLLSSCRIHGNVEIGKWAAESLL 471 (647)
Q Consensus 411 -~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 471 (647)
....++.|...|.+.+.+++|.++|.+. +..|+ ..+|..|...|...|+++.|+++.+.+.
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2467788889999999998888888765 34455 5689999999999999999999988776
No 79
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.02 E-value=8.7e-06 Score=82.75 Aligned_cols=454 Identities=11% Similarity=0.066 Sum_probs=278.2
Q ss_pred CCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHH
Q 006388 2 PFHDGVSWNLLISGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGS 81 (647)
Q Consensus 2 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 81 (647)
|.....-|-.++..| ..++|...+++.+..++.. +.-..|.....-.+...|+.++|...-+..++.. ..+.+.|.
T Consensus 4 ~~KE~~lF~~~lk~y-E~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwH 79 (700)
T KOG1156|consen 4 SPKENALFRRALKCY-ETKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWH 79 (700)
T ss_pred ChHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHH
Confidence 344445577777777 4678999999999988843 4555666666666677889999988877777654 34556677
Q ss_pred HHHHHHHhcCChHHHHHHhccCCC---CCchHHHHHHHHHHhcCChHHHHHHhhcCCC---CCeehHHHHHHHHHhCCCh
Q 006388 82 PLVDMYAKLGLIYDAKRGFDELPE---KNIVMYNTMITGLLRRGLVEESRRLFRGMKD---KDSISWTTMITGLMQNGLE 155 (647)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 155 (647)
.+.-.+-...++++|.+.|..... .|...|--+--.-++.|+++.....-....+ .....|..+..++.-.|++
T Consensus 80 v~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 80 VLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEY 159 (700)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 777777777899999999987653 3455666555555566666666555444433 3567899999999999999
Q ss_pred hHHHHHHHHHHHCC-CCCChhhHHHHHH------HHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 006388 156 REAIDLFREMRLEG-LAMDQFTFGSVLT------ACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYA 228 (647)
Q Consensus 156 ~~A~~~~~~m~~~g-~~pd~~t~~~ll~------~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 228 (647)
..|..++++..+.. -.|+...|.-... .....|.++.|.+.+..-... +......--.-.+.+.+.+++++|
T Consensus 160 ~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA 238 (700)
T KOG1156|consen 160 KMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEA 238 (700)
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhH
Confidence 99999999987754 3466655543322 234667777776665543322 222333344556788899999999
Q ss_pred HHHHhcCCCC--ChhHHHHH-HHHHHhcCChhHHH-HHHHHHHHCCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHHHH
Q 006388 229 ESVFRTMAWK--NVVSWTAM-LVGYGQNGCSEEAV-KIFCNMQRNGIEPDDF-TLGSVISSCANLASLEEGTQFHGRSLV 303 (647)
Q Consensus 229 ~~~~~~~~~~--~~~~~~~l-i~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~ 303 (647)
..++..+..+ |...|+-. ..++.+-.+.-+++ .+|....+. .|... ....=++......-.+....++....+
T Consensus 239 ~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~ 316 (700)
T KOG1156|consen 239 VKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLS 316 (700)
T ss_pred HHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhh
Confidence 9999998765 44444443 33443343444444 555555432 11111 111111111122223444555666666
Q ss_pred hCCCcchhHHHHHHHHHHhcCCHHH----HHHHHhhcC--------------CCChhhHHH--HHHHHHHcCChHHHHHH
Q 006388 304 TGLISFITVSNALVTFYGKCGNIED----SHRLFNEMN--------------VRDEVSWTA--LVSGYAKFGKANETIDL 363 (647)
Q Consensus 304 ~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~--------------~~d~~~~~~--li~~~~~~g~~~~A~~~ 363 (647)
.|+++- +..+...|-.-...+- +..+...+. .|....|+. ++..|-..|+++.|..+
T Consensus 317 Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~y 393 (700)
T KOG1156|consen 317 KGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEY 393 (700)
T ss_pred cCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 676542 3333333322211111 111111111 234444554 56778889999999999
Q ss_pred HHHHHHCCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhCCCC-
Q 006388 364 FEKMLSHGLKPDEV-TLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKMPFP- 441 (647)
Q Consensus 364 ~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 441 (647)
++..... .|+.+ -|..=.+.+.+.|++++|..++++..+ --.||...-.--+.-..++.+.++|.++.....-.
T Consensus 394 Id~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e--lD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 394 IDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE--LDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 9998874 77766 566666788999999999999998864 22344433334455667889999999887665210
Q ss_pred CC--------hhhHHHHH--HHHHhcCChhHHHHHHHH
Q 006388 442 PD--------AIGWATLL--SSCRIHGNVEIGKWAAES 469 (647)
Q Consensus 442 p~--------~~~~~~ll--~~~~~~~~~~~a~~~~~~ 469 (647)
-+ .-.|-.+- .+|.+.|++.+|.+-+..
T Consensus 470 ~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~ 507 (700)
T KOG1156|consen 470 FGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHE 507 (700)
T ss_pred cchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhh
Confidence 01 22444333 346677777666665443
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.01 E-value=3.2e-08 Score=87.53 Aligned_cols=161 Identities=19% Similarity=0.207 Sum_probs=138.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCc-ChHHHHHHHHH
Q 006388 344 WTALVSGYAKFGKANETIDLFEKMLSHGLKPDEV-TLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRP-IHDHYTCMIDI 421 (647)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~ 421 (647)
...+.-+|.+.|+...|..-+++.++. .|+.. ++..+...|.+.|..+.|.+.|+...+ +.| +..+.|....-
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHH
Confidence 445667888999999999999999885 56655 888888899999999999999998874 344 45788888999
Q ss_pred HHHcCCHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHH
Q 006388 422 LSRAGRLEEAKSFINKMPFPPD----AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHV 497 (647)
Q Consensus 422 ~~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 497 (647)
++..|++++|...|++.-..|. ..+|..++....+.|+.+.|+..+++.++.+|+.+.+...++....+.|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999998832332 568888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 006388 498 SQLRRTMREKGV 509 (647)
Q Consensus 498 ~~~~~~m~~~g~ 509 (647)
..++++...++.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999999887665
No 81
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.99 E-value=6.2e-06 Score=83.78 Aligned_cols=424 Identities=12% Similarity=-0.007 Sum_probs=237.0
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCC---CCchHHHHHHHHHHhc
Q 006388 45 FSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSPLVDMYAKLGLIYDAKRGFDELPE---KNIVMYNTMITGLLRR 121 (647)
Q Consensus 45 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 121 (647)
|..+++ |-..+++..+....+.+++ +.+....+....--.+...|+-++|......-.. +..+.|..+.-.+-..
T Consensus 11 F~~~lk-~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 11 FRRALK-CYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHH-HHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 344444 3345677777777777776 4444444444444445567899999888877665 3456788888888888
Q ss_pred CChHHHHHHhhcCCC--C-CeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhcCCChHHHHHHH
Q 006388 122 GLVEESRRLFRGMKD--K-DSISWTTMITGLMQNGLEREAIDLFREMRLEGLAMD-QFTFGSVLTACGGLLALEEGKQIH 197 (647)
Q Consensus 122 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~~a~~~~ 197 (647)
.++++|++.|..... + |...|.-+.-.-++.|+++.....-..+.+. .|+ ...|..+..+.--.|+...|..+.
T Consensus 89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987653 3 5566777766777788888888887777764 333 345667777777788899999888
Q ss_pred HHHHHcC-CCCchhHHHHHH------HHHHhcCCHHHHHHHHhcCCCC--Ch-hHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006388 198 AFIIRND-HKDNVFVGSALV------DMYCKCKSIKYAESVFRTMAWK--NV-VSWTAMLVGYGQNGCSEEAVKIFCNMQ 267 (647)
Q Consensus 198 ~~~~~~g-~~~~~~~~~~li------~~y~~~g~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 267 (647)
++..+.. -.|+...+.... ....+.|..++|.+.+...... |- ..-.+....+.+.++.++|..++..+.
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll 246 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLL 246 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHH
Confidence 8887765 245544443222 2345667778887777665543 22 223445567778888888888888888
Q ss_pred HCCCCCCHHHHHHHHHHHh-cc-CChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHH
Q 006388 268 RNGIEPDDFTLGSVISSCA-NL-ASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVRDEVSWT 345 (647)
Q Consensus 268 ~~g~~p~~~t~~~ll~a~~-~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~ 345 (647)
.. .||..-|...+..+. .. +..+....++....+.-.... .|--...+
T Consensus 247 ~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e----------------------------~p~Rlpls 296 (700)
T KOG1156|consen 247 ER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHE----------------------------CPRRLPLS 296 (700)
T ss_pred hh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc----------------------------cchhccHH
Confidence 76 577777766555443 12 222222233333222100000 00000000
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHH----HHHHHHHHHHh---------cCCCcCh
Q 006388 346 ALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEK----GRHYFEIMVKE---------YGIRPIH 412 (647)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~----a~~~~~~~~~~---------~~~~p~~ 412 (647)
.+ .-..-.+..-.++..+.+.|++|-...+.++. -.....+- +..+...+... ..-+|+.
T Consensus 297 vl----~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLy---k~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Ptt 369 (700)
T KOG1156|consen 297 VL----NGEELKEIVDKYLRPLLSKGVPSVFKDLRSLY---KDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTT 369 (700)
T ss_pred Hh----CcchhHHHHHHHHHHHhhcCCCchhhhhHHHH---hchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchH
Confidence 00 00111122233444444455443322222221 11111110 01111111000 0013333
Q ss_pred H--HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhh
Q 006388 413 D--HYTCMIDILSRAGRLEEAKSFINKM-PFPPD-AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIY 488 (647)
Q Consensus 413 ~--~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 488 (647)
. ++-.++..+-+.|+++.|..+++.+ ...|+ +..|.+-...+...|+++.|...++++.+++-.|...-.--+.-.
T Consensus 370 llWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYm 449 (700)
T KOG1156|consen 370 LLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYM 449 (700)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 2 3334556666677777777777665 44454 334444445566666777777777777776655544444455555
Q ss_pred hhCCChhHHHHHHHHHHhCCC
Q 006388 489 ASKGKWDHVSQLRRTMREKGV 509 (647)
Q Consensus 489 ~~~g~~~~a~~~~~~m~~~g~ 509 (647)
.++.+.++|.++.......|.
T Consensus 450 LrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 450 LRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHccccHHHHHHHHHhhhccc
Confidence 666777777777666665553
No 82
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=1.2e-05 Score=80.88 Aligned_cols=439 Identities=10% Similarity=0.045 Sum_probs=253.9
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHH--HHHHH--H
Q 006388 13 ISGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSP--LVDMY--A 88 (647)
Q Consensus 13 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~~--~ 88 (647)
++-+.++|++++|+....++...+ |.|...+..=+-+..+.+.++.|..+.+. .+. ..+++. +=.+| .
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHHHHHHH
Confidence 556778999999999999999876 77888888888888999999998854332 221 111222 23344 4
Q ss_pred hcCChHHHHHHhccCCCCCchHHHHHHHHHHhcCChHHHHHHhhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 006388 89 KLGLIYDAKRGFDELPEKNIVMYNTMITGLLRRGLVEESRRLFRGMKDKDSISWTTMITGLMQNGLEREAIDLFREMRLE 168 (647)
Q Consensus 89 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 168 (647)
+.+..|+|...++...+-|..+...-...+-+.|++++|.++|+.+.+.+...+...+++-+..-- .+... +.|...
T Consensus 91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~--a~l~~-~~~q~v 167 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA--AALQV-QLLQSV 167 (652)
T ss_pred HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH--HhhhH-HHHHhc
Confidence 789999999999966666666777778888999999999999999987766666555543221100 11111 123333
Q ss_pred CCCCChhhHHHHHH---HHhcCCChHHHHHHHHHHHHcCC-------CCch-------hHHHHHHHHHHhcCCHHHHHHH
Q 006388 169 GLAMDQFTFGSVLT---ACGGLLALEEGKQIHAFIIRNDH-------KDNV-------FVGSALVDMYCKCKSIKYAESV 231 (647)
Q Consensus 169 g~~pd~~t~~~ll~---~~~~~~~~~~a~~~~~~~~~~g~-------~~~~-------~~~~~li~~y~~~g~~~~A~~~ 231 (647)
...| ..||..+.+ .+...|++..|+++++...+.+. ..+. .+-.-|.-.+-..|+.++|..+
T Consensus 168 ~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 168 PEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred cCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 3444 445555554 34577899999999988843321 1101 1223355567788999999998
Q ss_pred HhcCCCC---Ch----hHHHHHHHHHHhcCChh-HHHHHHHHHHHCCC----------CCCHHHHHHHHHHHhccCChHH
Q 006388 232 FRTMAWK---NV----VSWTAMLVGYGQNGCSE-EAVKIFCNMQRNGI----------EPDDFTLGSVISSCANLASLEE 293 (647)
Q Consensus 232 ~~~~~~~---~~----~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~----------~p~~~t~~~ll~a~~~~~~~~~ 293 (647)
+..+... |. +.-|.|+..-....-++ .++..++.....-. +-..+..+..+-++ ..+..+.
T Consensus 247 y~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l-~tnk~~q 325 (652)
T KOG2376|consen 247 YVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL-FTNKMDQ 325 (652)
T ss_pred HHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHH
Confidence 8887643 22 23344443322222222 22222222211100 00111111111111 1122222
Q ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHhc--CCHHHHHHHHhhcCCC----ChhhHHHHHHHHHHcCChHHHHHHHH--
Q 006388 294 GTQFHGRSLVTGLISFITVSNALVTFYGKC--GNIEDSHRLFNEMNVR----DEVSWTALVSGYAKFGKANETIDLFE-- 365 (647)
Q Consensus 294 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~----d~~~~~~li~~~~~~g~~~~A~~~~~-- 365 (647)
+.++- ...........+..++....++ .....|.+++...... ..+.--+++......|+++.|++++.
T Consensus 326 ~r~~~---a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~ 402 (652)
T KOG2376|consen 326 VRELS---ASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLF 402 (652)
T ss_pred HHHHH---HhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 22222 2221111123333344333322 2356666666665532 24455566777788999999999998
Q ss_pred ------HHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC-CcChHHHH----HHHHHHHHcCCHHHHHHH
Q 006388 366 ------KMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGI-RPIHDHYT----CMIDILSRAGRLEEAKSF 434 (647)
Q Consensus 366 ------~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~----~li~~~~~~g~~~~A~~~ 434 (647)
...+.+..|-.+. .+..-+.+.++-+.|..++.+.++.+.. .+...... -++..=.+.|+-++|..+
T Consensus 403 ~~~~~ss~~~~~~~P~~V~--aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~ 480 (652)
T KOG2376|consen 403 LESWKSSILEAKHLPGTVG--AIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSL 480 (652)
T ss_pred hhhhhhhhhhhccChhHHH--HHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHH
Confidence 5555555565543 4455566666666666666655543211 12222333 333444577999999999
Q ss_pred HHhC-C-CCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 006388 435 INKM-P-FPPDAIGWATLLSSCRIHGNVEIGKWAAESL 470 (647)
Q Consensus 435 ~~~~-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 470 (647)
++++ . .++|..+...++.+|... |.+.|+.+-.++
T Consensus 481 leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 481 LEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 9998 3 456788888899888775 466676665443
No 83
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=5.1e-07 Score=82.64 Aligned_cols=314 Identities=14% Similarity=0.018 Sum_probs=190.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHH-HHHHHH
Q 006388 9 WNLLISGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGS-PLVDMY 87 (647)
Q Consensus 9 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~~ 87 (647)
+++.+..+.+..++++|++++..-.++. +.+....+.|..+|-...++..|...++++-..- |...-|. --...+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHH
Confidence 6777888889999999999999988876 5688888889888999999999999999987654 3222221 122344
Q ss_pred HhcCChHHHHHHhccCCCC-CchHHHHHHHHH--HhcCChHHHHHHhhcCCC-CCeehHHHHHHHHHhCCChhHHHHHHH
Q 006388 88 AKLGLIYDAKRGFDELPEK-NIVMYNTMITGL--LRRGLVEESRRLFRGMKD-KDSISWTTMITGLMQNGLEREAIDLFR 163 (647)
Q Consensus 88 ~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~ 163 (647)
-+.+.+.+|.++...|.+. +...-..-+.+. -..+++..+..+.++.+. .+..+.+...-...+.|+++.|++-|+
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 5778999999999988863 333222223332 367899999999999984 566666666667788999999999999
Q ss_pred HHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHH----HHHHHHHhcCCHHHHHHHHhcCCCCC
Q 006388 164 EMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGS----ALVDMYCKCKSIKYAESVFRTMAWKN 239 (647)
Q Consensus 164 ~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~li~~y~~~g~~~~A~~~~~~~~~~~ 239 (647)
...+-+--.....|+..+..+ +.++.+.|.+...+++++|+...+...- -.++.-+-.+-..-+.. .=
T Consensus 169 aAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~S-------al 240 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQS-------AL 240 (459)
T ss_pred HHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHH-------HH
Confidence 998754333456777766554 5688999999999999888643222110 00000000000000000 00
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 006388 240 VVSWTAMLVGYGQNGCSEEAVKIFCNMQRN-GIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVT 318 (647)
Q Consensus 240 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 318 (647)
+.++|.-...+.+.|+++.|.+.+..|.-. .-..|++|...+.-.- ..+++..+..-++.+...+ +-...++..++-
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLl 318 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLL 318 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHH
Confidence 123344444455555565555555555322 1233445544332111 1223333444444444432 223345555555
Q ss_pred HHHhcCCHHHHHHHHhhc
Q 006388 319 FYGKCGNIEDSHRLFNEM 336 (647)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~ 336 (647)
.|||..-++-|..++.+-
T Consensus 319 lyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 319 LYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHhhhHHHhHHHHHHhhC
Confidence 666666666666665543
No 84
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.95 E-value=2.8e-07 Score=90.46 Aligned_cols=218 Identities=9% Similarity=0.003 Sum_probs=136.4
Q ss_pred ChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHH
Q 006388 255 CSEEAVKIFCNMQRNG-IEPD--DFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHR 331 (647)
Q Consensus 255 ~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 331 (647)
..+.++.-+.++.... ..|+ ...|......+...|+.++|...+...++.. +.+...++.+...|...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4445555555555321 1222 1234444455566666666666666666654 3456677778888888888888888
Q ss_pred HHhhcCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC
Q 006388 332 LFNEMNV--R-DEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGI 408 (647)
Q Consensus 332 ~~~~~~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 408 (647)
.|++..+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|+.... ..
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~ 195 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KL 195 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hC
Confidence 8887752 2 4567788888888889999999999988874 55544222222234456788999998876553 22
Q ss_pred CcChHHHHHHHHHHHHcCCHHH--HHHHHHhC-C----CCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchh
Q 006388 409 RPIHDHYTCMIDILSRAGRLEE--AKSFINKM-P----FPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPAS 480 (647)
Q Consensus 409 ~p~~~~~~~li~~~~~~g~~~~--A~~~~~~~-~----~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 480 (647)
.|+...+ .++.. ..|++.+ +.+.+.+. . ..| ....|..+...+...|++++|+..|+++++.+|.+..-
T Consensus 196 ~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e 272 (296)
T PRK11189 196 DKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVE 272 (296)
T ss_pred CccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHH
Confidence 3332222 23333 3454433 33333221 1 112 24678999999999999999999999999999865433
No 85
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=9.7e-08 Score=88.41 Aligned_cols=227 Identities=13% Similarity=0.096 Sum_probs=183.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhcc
Q 006388 212 GSALVDMYCKCKSIKYAESVFRTMAW--KNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLG-SVISSCANL 288 (647)
Q Consensus 212 ~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~ 288 (647)
-+-+..+|.+.|.+.+|.+.|+.-.. +-+.||-.|-..|.+..+++.|+.+|.+-.+. .|-.+||. .+...+...
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence 35788999999999999999987653 57789999999999999999999999988775 67777765 455667778
Q ss_pred CChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHH
Q 006388 289 ASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMN---VRDEVSWTALVSGYAKFGKANETIDLFE 365 (647)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~ 365 (647)
++.+.+.+++....+.. +.++....++...|.-.++.+-|+..++++. ..++..|+.+.-+|...++++-++..|+
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 99999999999998875 4455566667777888899999999999876 4578889999999999999999999999
Q ss_pred HHHHCCCCCCHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC
Q 006388 366 KMLSHGLKPDEV--TLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP 442 (647)
Q Consensus 366 ~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p 442 (647)
+.+..--.|+.. .|-.+-......|++..|.+.|+-... .-....+.++.|.-+-.+.|++++|..++... .+.|
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 988765556654 666676677788999999999987764 33345678888888888999999999999877 3445
Q ss_pred C
Q 006388 443 D 443 (647)
Q Consensus 443 ~ 443 (647)
+
T Consensus 461 ~ 461 (478)
T KOG1129|consen 461 D 461 (478)
T ss_pred c
Confidence 4
No 86
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.88 E-value=1.4e-05 Score=81.90 Aligned_cols=220 Identities=17% Similarity=0.171 Sum_probs=142.1
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHH
Q 006388 249 GYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIED 328 (647)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 328 (647)
+-....+|.+|+.+++.++... .-.--|..+..-|+..|+++.|+++|.+. ..++-.|+||.+.|++++
T Consensus 741 aai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence 3445566777777777766543 22334566777788888888888887543 234557788888888888
Q ss_pred HHHHHhhcCCC--ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc
Q 006388 329 SHRLFNEMNVR--DEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEY 406 (647)
Q Consensus 329 A~~~~~~~~~~--d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 406 (647)
|.++-.+...| ...+|-+-..-+-.+|++.+|.++|-... .|+. .|..|-+.|..+..+++.+.-
T Consensus 810 a~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~---- 876 (1636)
T KOG3616|consen 810 AFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKH---- 876 (1636)
T ss_pred HHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHh----
Confidence 88887777655 34456555666777888888887775432 3442 355677777777777665532
Q ss_pred CCCcChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHH
Q 006388 407 GIRPIHDHYTCMIDILSRAGRLEEAKSFINKMPFPPDAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSS 486 (647)
Q Consensus 407 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 486 (647)
.-..-..+...+..-|...|++.+|.+-|-+.+ -|.+-++.|...+-+++|-++.+ ..+..|..-.+...+
T Consensus 877 h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~lw~dayriak---tegg~n~~k~v~flw 947 (1636)
T KOG3616|consen 877 HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASELWEDAYRIAK---TEGGANAEKHVAFLW 947 (1636)
T ss_pred ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhhhHHHHHHHHh---ccccccHHHHHHHHH
Confidence 112223455566777888888888888887765 36666677777777766655543 333445556666666
Q ss_pred hhhhCCChhHHHHHHHH
Q 006388 487 IYASKGKWDHVSQLRRT 503 (647)
Q Consensus 487 ~~~~~g~~~~a~~~~~~ 503 (647)
+-+-.|+ .|.+++.+
T Consensus 948 aksiggd--aavkllnk 962 (1636)
T KOG3616|consen 948 AKSIGGD--AAVKLLNK 962 (1636)
T ss_pred HHhhCcH--HHHHHHHh
Confidence 6655564 56666654
No 87
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.86 E-value=5.2e-06 Score=88.11 Aligned_cols=465 Identities=13% Similarity=0.045 Sum_probs=284.8
Q ss_pred ChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHh
Q 006388 21 SVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSPLVDMYAKLGLIYDAKRGF 100 (647)
Q Consensus 21 ~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 100 (647)
+...|+..|-+..+.. +.=...|..|...|....+...|++.|+...+.. ..+......+.+.|++...++.|..+.
T Consensus 473 ~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 4677888887777665 3345678889988888888889999999988776 567778888999999999999998885
Q ss_pred ccCCCCCc-----hHHHHHHHHHHhcCChHHHHHHhhcCCC---CCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 006388 101 DELPEKNI-----VMYNTMITGLLRRGLVEESRRLFRGMKD---KDSISWTTMITGLMQNGLEREAIDLFREMRLEGLAM 172 (647)
Q Consensus 101 ~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 172 (647)
-...+.+. ..|....-.|.+.++...|..-|+...+ +|...|..+..+|...|++..|+++|.+... +.|
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP 627 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRP 627 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCc
Confidence 54444322 2344455567788899999999987765 3677899999999999999999999988866 445
Q ss_pred ChhhHHHHHHH--HhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh-------cCCHHHHHHHHhcCCCCChhHH
Q 006388 173 DQFTFGSVLTA--CGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCK-------CKSIKYAESVFRTMAWKNVVSW 243 (647)
Q Consensus 173 d~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-------~g~~~~A~~~~~~~~~~~~~~~ 243 (647)
+. +|.....+ -+..|.+.++...++.++..- .......+.|...+.+ .|-...|...|+.-. ..+
T Consensus 628 ~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~-s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi----e~f 701 (1238)
T KOG1127|consen 628 LS-KYGRFKEAVMECDNGKYKEALDALGLIIYAF-SLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI----ESF 701 (1238)
T ss_pred Hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH----HHH
Confidence 43 33333322 346788889988888776531 1111222333333333 233333333333221 111
Q ss_pred HH-HHHHHHhcC----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh---H---HHHHHHHHHHHhCCCcchhH
Q 006388 244 TA-MLVGYGQNG----CSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASL---E---EGTQFHGRSLVTGLISFITV 312 (647)
Q Consensus 244 ~~-li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~ 312 (647)
.. ++...+... -..+|..+|-+.. .. .|+......+..-.-..+.. + .|-+.+.. ...+..+...
T Consensus 702 ~~~l~h~~~~~~~~Wi~asdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~--hlsl~~~~~~ 777 (1238)
T KOG1127|consen 702 IVSLIHSLQSDRLQWIVASDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA--HLSLAIHMYP 777 (1238)
T ss_pred HHHHHHhhhhhHHHHHHHhHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH--HHHHhhccch
Confidence 11 111101000 0123334444433 11 23333322222212223322 1 11111111 1112223344
Q ss_pred HHHHHHHHHh----cC----CHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 006388 313 SNALVTFYGK----CG----NIEDSHRLFNEMN---VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIG 381 (647)
Q Consensus 313 ~~~li~~~~~----~g----~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 381 (647)
|..|+.-|.+ +| +...|...+.... ..+...||+|.-. ...|.+.-|.-.|-+-... .+-+..+|..
T Consensus 778 WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~N 855 (1238)
T KOG1127|consen 778 WYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLN 855 (1238)
T ss_pred HHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheec
Confidence 4444444333 22 2235666666544 4577888887665 5567777777777665554 2345568888
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHhcCCCcC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCChhhHHHHHHH
Q 006388 382 VLSACSRAGLVEKGRHYFEIMVKEYGIRPI-HDHYTCMIDILSRAGRLEEAKSFINKM-------PFPPDAIGWATLLSS 453 (647)
Q Consensus 382 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~ll~~ 453 (647)
+.-.|....+++.|...|.... .+.|+ ...|--........|+.-++..+|..- +.-|+...|-.-..-
T Consensus 856 lgvL~l~n~d~E~A~~af~~~q---SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~ 932 (1238)
T KOG1127|consen 856 LGVLVLENQDFEHAEPAFSSVQ---SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEI 932 (1238)
T ss_pred cceeEEecccHHHhhHHHHhhh---hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHH
Confidence 8888889999999999998775 44553 455544444455678888888888652 334666667666555
Q ss_pred HHhcCChhHHHH----------HHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHH
Q 006388 454 CRIHGNVEIGKW----------AAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMR 505 (647)
Q Consensus 454 ~~~~~~~~~a~~----------~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 505 (647)
...+|+.++-+. .+++.+...|+...+|...+...-+.+.+++|.+...+..
T Consensus 933 h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 933 HLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 666666554433 4555666789888999999999999999988888776653
No 88
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.84 E-value=2.9e-05 Score=79.77 Aligned_cols=378 Identities=16% Similarity=0.151 Sum_probs=191.9
Q ss_pred HHHHHHHHhcCChHHHHHHhccCC--CCCchHHHHHHHHHHhcCChHHHHHHhhcCCCCCeehHHHHHHHHHhCCChhHH
Q 006388 81 SPLVDMYAKLGLIYDAKRGFDELP--EKNIVMYNTMITGLLRRGLVEESRRLFRGMKDKDSISWTTMITGLMQNGLEREA 158 (647)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 158 (647)
-+-|..|.+.|.+..|.+....-. ..|......+..++.+..-+++|-.+|+++..++- -+..|-+-.-+.+|
T Consensus 619 laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dk-----ale~fkkgdaf~ka 693 (1636)
T KOG3616|consen 619 LAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDK-----ALECFKKGDAFGKA 693 (1636)
T ss_pred HHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHH-----HHHHHHcccHHHHH
Confidence 345777888888777766543222 24555555566666666667777777776654431 11222222223333
Q ss_pred HHHHHHHHHCCCCCChhhHH-HHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 006388 159 IDLFREMRLEGLAMDQFTFG-SVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMAW 237 (647)
Q Consensus 159 ~~~~~~m~~~g~~pd~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 237 (647)
+++-+-. ++...+++. .--..+...|+++.|..-|-+.. ....-+.+-.....+.+|..+++.+..
T Consensus 694 ielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqd 760 (1636)
T KOG3616|consen 694 IELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQD 760 (1636)
T ss_pred HHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhh
Confidence 3332221 100111110 00011122233333332221110 011123344445556666666666555
Q ss_pred CChhH--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHH
Q 006388 238 KNVVS--WTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNA 315 (647)
Q Consensus 238 ~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 315 (647)
+++.+ |..+...|...|+++.|.++|.+.- .++-.|..|.+.|.++.|.++-.+. .|.......|-+
T Consensus 761 qk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yia 829 (1636)
T KOG3616|consen 761 QKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIA 829 (1636)
T ss_pred hccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHH
Confidence 54432 4455556666666666666654321 1334445556666666555544332 222334444555
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhcCCcHH
Q 006388 316 LVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDE--VTLIGVLSACSRAGLVE 393 (647)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~ 393 (647)
-..-+-+.|++.+|++++-.+..||. .|..|-++|..+..+++.++- .|+. .|-..+..-+...|++.
T Consensus 830 kaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~-----h~d~l~dt~~~f~~e~e~~g~lk 899 (1636)
T KOG3616|consen 830 KAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH-----HGDHLHDTHKHFAKELEAEGDLK 899 (1636)
T ss_pred hHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-----ChhhhhHHHHHHHHHHHhccChh
Confidence 55555667777777777777766653 356677777777777776653 2332 25555566666677777
Q ss_pred HHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhCCCC----CChhhHHHHH------HHHHhcCChhHH
Q 006388 394 KGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKMPFP----PDAIGWATLL------SSCRIHGNVEIG 463 (647)
Q Consensus 394 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----p~~~~~~~ll------~~~~~~~~~~~a 463 (647)
.|...|-+.- -|.+-+++|-.++.+++|.++-+.-+-. .-...|..-+ ..+-++|-++.|
T Consensus 900 aae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~ 969 (1636)
T KOG3616|consen 900 AAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAA 969 (1636)
T ss_pred HHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHH
Confidence 7776654432 2455666777777777777776554211 0122332211 223345555444
Q ss_pred HHHH------HHHhcc-----CCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhC
Q 006388 464 KWAA------ESLLEL-----DPYNPASYVLLSSIYASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 464 ~~~~------~~~~~~-----~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 507 (647)
+... +.++++ ...-+..+..++.-+...|++++|.+-+-+..+.
T Consensus 970 id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 970 IDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred hhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhc
Confidence 4421 111111 1123456667777777888888887766555443
No 89
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.79 E-value=1e-05 Score=86.02 Aligned_cols=493 Identities=10% Similarity=-0.026 Sum_probs=255.8
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhC-CCCchhhHHHHHH
Q 006388 7 VSWNLLISGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFG-FGSYVFVGSPLVD 85 (647)
Q Consensus 7 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~ 85 (647)
..|..|...|...-+...|.+.|++..+.+ +.|......+...++...+++.|..+.-..-+.. ...-..-+..+--
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 358888888888778889999999999887 6788899999999999999999998832221111 0111122222334
Q ss_pred HHHhcCChHHHHHHhccCCC---CCchHHHHHHHHHHhcCChHHHHHHhhcCCCCCeehHHHH---HHHHHhCCChhHHH
Q 006388 86 MYAKLGLIYDAKRGFDELPE---KNIVMYNTMITGLLRRGLVEESRRLFRGMKDKDSISWTTM---ITGLMQNGLEREAI 159 (647)
Q Consensus 86 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~ 159 (647)
.|.+.++..+|..-|+...+ .|...|..+..+|.++|++..|.++|.+...-++.++-.- ...-+..|.+++|+
T Consensus 571 yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHH
Confidence 56777888888888887765 4667899999999999999999999988776555443322 22345678899988
Q ss_pred HHHHHHHHC------CCCCChhhHHHHHHHHhcCCC-------hHHHHHHHHHHHHcCCCCchhHHHH------------
Q 006388 160 DLFREMRLE------GLAMDQFTFGSVLTACGGLLA-------LEEGKQIHAFIIRNDHKDNVFVGSA------------ 214 (647)
Q Consensus 160 ~~~~~m~~~------g~~pd~~t~~~ll~~~~~~~~-------~~~a~~~~~~~~~~g~~~~~~~~~~------------ 214 (647)
..+...... +..--..++..+...+...|- ++.+.+.+.-.+......+...|-.
T Consensus 651 d~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e 730 (1238)
T KOG1127|consen 651 DALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEE 730 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhc
Confidence 888776532 111112233333333332332 2233333333322221222222221
Q ss_pred -------HHHHHHh----cCCH---H---HHHHHHhcCC--CCChhHHHHHHHHHHh----cC----ChhHHHHHHHHHH
Q 006388 215 -------LVDMYCK----CKSI---K---YAESVFRTMA--WKNVVSWTAMLVGYGQ----NG----CSEEAVKIFCNMQ 267 (647)
Q Consensus 215 -------li~~y~~----~g~~---~---~A~~~~~~~~--~~~~~~~~~li~~~~~----~g----~~~~A~~~~~~m~ 267 (647)
++..+.+ .+.. | -+.+.+-.-. ..+..+|..++..|.+ .| +...|+..+.+..
T Consensus 731 ~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV 810 (1238)
T KOG1127|consen 731 PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAV 810 (1238)
T ss_pred ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHH
Confidence 1222211 1111 0 0000000000 0134566666655544 12 2235666666665
Q ss_pred HCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhH
Q 006388 268 RNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVR---DEVSW 344 (647)
Q Consensus 268 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---d~~~~ 344 (647)
+.. .-+..+|+.+- .....|++..+...|-...... +....+|..+.-.+.+..+++-|...|.....- |...|
T Consensus 811 ~L~-ann~~~WnaLG-Vlsg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~W 887 (1238)
T KOG1127|consen 811 SLC-ANNEGLWNALG-VLSGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQW 887 (1238)
T ss_pred HHh-hccHHHHHHHH-Hhhccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHH
Confidence 531 22344444433 3344444444433332222221 334455555666666666676666666665422 33444
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHH--H--CCC-------------------------------------------CC-CH
Q 006388 345 TALVSGYAKFGKANETIDLFEKML--S--HGL-------------------------------------------KP-DE 376 (647)
Q Consensus 345 ~~li~~~~~~g~~~~A~~~~~~m~--~--~g~-------------------------------------------~p-~~ 376 (647)
--........|+.-+++.+|..-- . .|- .| +.
T Consensus 888 lG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~ 967 (1238)
T KOG1127|consen 888 LGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLC 967 (1238)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchh
Confidence 433333333444444444443310 0 111 12 22
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHH----HHHHHHHcCCHHHHHHHHHhCCCCCChhhHHHHHH
Q 006388 377 VTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTC----MIDILSRAGRLEEAKSFINKMPFPPDAIGWATLLS 452 (647)
Q Consensus 377 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~----li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~ 452 (647)
..|........+.+.+..|.+...+.+.-...+-+...|+. +...+...|.++.|..-+...+...+..+-.+-+.
T Consensus 968 fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~ 1047 (1238)
T KOG1127|consen 968 FAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLT 1047 (1238)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHH
Confidence 24444444444444454444444433221111223333332 22334445666655555554433333333333232
Q ss_pred HHHhcCChhHHHHHHHHHhccCCCCch---hHHHHHHhhhhCCChhHHHHHHHHHH
Q 006388 453 SCRIHGNVEIGKWAAESLLELDPYNPA---SYVLLSSIYASKGKWDHVSQLRRTMR 505 (647)
Q Consensus 453 ~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~ 505 (647)
. .-.++++++...|++++.+..++.. ....++......+.-+.|...+-+..
T Consensus 1048 l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1048 L-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVK 1102 (1238)
T ss_pred H-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHH
Confidence 2 3457788899999998876544332 33344445556666777776655544
No 90
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.78 E-value=2.7e-06 Score=75.59 Aligned_cols=125 Identities=15% Similarity=0.102 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 006388 242 SWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDD-FTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFY 320 (647)
Q Consensus 242 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 320 (647)
+...|.-+|.+.|+...|..-+++..+. .|+. .++..+...|.+.|..+.|.+.|+..++.. +.+..+.|.....+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 3444555666666666666666666654 3332 345555555555566666666555555543 23344445555555
Q ss_pred HhcCCHHHHHHHHhhcC-CC----ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 006388 321 GKCGNIEDSHRLFNEMN-VR----DEVSWTALVSGYAKFGKANETIDLFEKMLS 369 (647)
Q Consensus 321 ~~~g~~~~A~~~~~~~~-~~----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (647)
|..|++++|...|++.. .| -..+|..+.-+..+.|+.+.|...|++.++
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~ 167 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE 167 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH
Confidence 55555555555554433 22 123444444444444444444444444444
No 91
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=2.6e-07 Score=92.38 Aligned_cols=218 Identities=12% Similarity=0.068 Sum_probs=165.6
Q ss_pred hccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHHHHH
Q 006388 286 ANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVR---DEVSWTALVSGYAKFGKANETID 362 (647)
Q Consensus 286 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---d~~~~~~li~~~~~~g~~~~A~~ 362 (647)
.+.|++.+|.-.|+..++.+ +.+...|.-|...-...++-..|+..+++..+- |....-+|.-.|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 45666777777777777665 556677777777777777777777777766533 55566666677888888888888
Q ss_pred HHHHHHHCCCC--------CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHH
Q 006388 363 LFEKMLSHGLK--------PDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSF 434 (647)
Q Consensus 363 ~~~~m~~~g~~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 434 (647)
.++.-+....+ ++..+-.. ..+.....+....++|-.+....+..+|++++.+|.-+|--.|.+++|.+.
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 88876553210 01000000 122333345566677777777667678889999999999999999999999
Q ss_pred HHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 435 INKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 435 ~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
|+.+ .++| |...||-|+..+....+.++|+.+|.+++++.|.-..+.+.|+-.|...|.+++|.+.|-....
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9988 6677 5889999999999999999999999999999999999999999999999999999999877764
No 92
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=7.5e-05 Score=79.55 Aligned_cols=332 Identities=15% Similarity=0.126 Sum_probs=191.7
Q ss_pred CeehHHHHHHHHHhCCChhHHHHHHHHHHHCC--CCCChhhHHHHHHHHhc---------------------------CC
Q 006388 138 DSISWTTMITGLMQNGLEREAIDLFREMRLEG--LAMDQFTFGSVLTACGG---------------------------LL 188 (647)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~pd~~t~~~ll~~~~~---------------------------~~ 188 (647)
|+..-+.-+.++...+-+.+-++++++..-.. +.-+...-+.++-...+ .+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~ 1062 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQ 1062 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhh
Confidence 66667777888888888889999988876432 11111112222222111 11
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006388 189 ALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMAWKNVVSWTAMLVGYGQNGCSEEAVKIFCNMQR 268 (647)
Q Consensus 189 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 268 (647)
-+++|..+|... ..+....+.|+. .-+.++.|.+.-++..+ +..|..+..+-.+.|...+|++-|-+.
T Consensus 1063 LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika-- 1130 (1666)
T KOG0985|consen 1063 LYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA-- 1130 (1666)
T ss_pred HHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc--
Confidence 122222222211 222222222222 12344444444444433 457899999999999999998877432
Q ss_pred CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC----------
Q 006388 269 NGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNV---------- 338 (647)
Q Consensus 269 ~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------- 338 (647)
-|...|..++.++.+.|.+++-..++....+..-.|.+ -+.|+-+|++.+++.+-++++..-..
T Consensus 1131 ----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrc 1204 (1666)
T KOG0985|consen 1131 ----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRC 1204 (1666)
T ss_pred ----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHH
Confidence 36678999999999999999999998888877655544 45788899999998887766542110
Q ss_pred -------------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 006388 339 -------------RDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKE 405 (647)
Q Consensus 339 -------------~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 405 (647)
.++..|..|...+...|+++.|.+.-++. .+..||..+-.+|...+.+.-|. |..
T Consensus 1205 f~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCG- 1272 (1666)
T KOG0985|consen 1205 FEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICG- 1272 (1666)
T ss_pred hhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcC-
Confidence 03444555566666666666665554432 23456777777776665554442 211
Q ss_pred cCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHH
Q 006388 406 YGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVL 483 (647)
Q Consensus 406 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 483 (647)
..+....+-..-|+.-|-..|.++|-..+++.. +.+. .-..+.-|.-.|.+.+ .++-.+.++-.... ...--
T Consensus 1273 L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk-p~km~EHl~LFwsR-----vNipK 1346 (1666)
T KOG0985|consen 1273 LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSR-----VNIPK 1346 (1666)
T ss_pred ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHh-----cchHH
Confidence 123334455667777788888888888777765 4332 2334444444444433 33333333332211 11123
Q ss_pred HHHhhhhCCChhHHHHHHHHHH
Q 006388 484 LSSIYASKGKWDHVSQLRRTMR 505 (647)
Q Consensus 484 l~~~~~~~g~~~~a~~~~~~m~ 505 (647)
++.++..+..|.+..-++.+-.
T Consensus 1347 viRA~eqahlW~ElvfLY~~y~ 1368 (1666)
T KOG0985|consen 1347 VIRAAEQAHLWSELVFLYDKYE 1368 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 5666777777777766665443
No 93
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.77 E-value=1e-05 Score=84.19 Aligned_cols=126 Identities=18% Similarity=0.160 Sum_probs=89.3
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHH
Q 006388 378 TLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPI-HDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSC 454 (647)
Q Consensus 378 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 454 (647)
++..+...|.+.|++++|+++.+..+. ..|+ ++.|..-...|-+.|++++|.+.++.. ...+ |..+-+-....+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 444455667788888888888888774 3565 577888888888888888888888877 3333 444444555566
Q ss_pred HhcCChhHHHHHHHHHhccC--CCC-------chhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 455 RIHGNVEIGKWAAESLLELD--PYN-------PASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 455 ~~~~~~~~a~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
.+.|++++|+..+......+ |.. .....-.+.+|.+.|++..|.+.+..+.+
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 78888888888888776554 211 12234667889999999998888776654
No 94
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.76 E-value=0.00012 Score=76.38 Aligned_cols=119 Identities=10% Similarity=0.063 Sum_probs=64.4
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHHC--------CCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchh
Q 006388 7 VSWNLLISGHASHGSVNDAVKVYNLMLKD--------GLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVF 78 (647)
Q Consensus 7 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 78 (647)
+.|..|.+.+.+..+++-|.-.+-.|... .. +.+..+=..+.-.....|.+++|+.++++-.+..
T Consensus 758 ~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~-q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~D------ 830 (1416)
T KOG3617|consen 758 SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ-QNGEEDEAKVAVLAIELGMLEEALILYRQCKRYD------ 830 (1416)
T ss_pred HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH-hCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHH------
Confidence 45777777777776666665555444321 01 1111222222222345667777777777665543
Q ss_pred hHHHHHHHHHhcCChHHHHHHhccCCC-CCchHHHHHHHHHHhcCChHHHHHHhhcCC
Q 006388 79 VGSPLVDMYAKLGLIYDAKRGFDELPE-KNIVMYNTMITGLLRRGLVEESRRLFRGMK 135 (647)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 135 (647)
.|-..|-..|.+++|.++-+.-.. .=..||.....-+-..++.+.|++.|++..
T Consensus 831 ---LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~ 885 (1416)
T KOG3617|consen 831 ---LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAG 885 (1416)
T ss_pred ---HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcC
Confidence 233456666777777766544322 112355555555556677777777776654
No 95
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=6.9e-06 Score=81.77 Aligned_cols=214 Identities=17% Similarity=0.149 Sum_probs=135.4
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC---hh-------hHHHHHH
Q 006388 280 SVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVRD---EV-------SWTALVS 349 (647)
Q Consensus 280 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d---~~-------~~~~li~ 349 (647)
.+.++..+..+++.+.+-+....... .+..-++.....|...|.+..+...-+...+.. .. +...+..
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 34555556666777777777666665 555556667777777777766665554433221 11 1222334
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcCh-HHHHHHHHHHHHcCCH
Q 006388 350 GYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIH-DHYTCMIDILSRAGRL 428 (647)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~ 428 (647)
+|.+.++++.++..|.+.+.....|+..+ +....+++....+... -+.|.. .-...=...+.+.|++
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCH
Confidence 56666777888888877666544544221 1222333333322221 223332 1111124556778888
Q ss_pred HHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 429 EEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 429 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
.+|...+.++ ...| |...|.....+|.+.|++..|..-.+..++++|+....|.-=+.++....+|++|.+.|++-.+
T Consensus 375 ~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888887 3345 5778888888888888888888888888888888888888888888888888888888887655
Q ss_pred C
Q 006388 507 K 507 (647)
Q Consensus 507 ~ 507 (647)
.
T Consensus 455 ~ 455 (539)
T KOG0548|consen 455 L 455 (539)
T ss_pred c
Confidence 3
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.76 E-value=1.7e-05 Score=80.89 Aligned_cols=257 Identities=10% Similarity=-0.020 Sum_probs=142.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHh----ccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHh
Q 006388 248 VGYGQNGCSEEAVKIFCNMQRNGIEPDDF-TLGSVISSCA----NLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGK 322 (647)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 322 (647)
..+...|++++|.+.+++..+. .|+.. .+.. ...+. ..+....+.+.+.. .....+........+...+..
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHH
Confidence 3455667777777777776654 34332 2221 11111 22333344433333 111112223344455567777
Q ss_pred cCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHhcCCcHHHHH
Q 006388 323 CGNIEDSHRLFNEMN---VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGL-KPDE--VTLIGVLSACSRAGLVEKGR 396 (647)
Q Consensus 323 ~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~ 396 (647)
.|++++|.+.+++.. ..+...+..+...|...|++++|...+++...... .|+. ..+..+...+...|++++|.
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 888888888877765 23456677777778888888888888887766421 1222 23445666777788888888
Q ss_pred HHHHHHHHhcCCCcChHHH-H--HHHHHHHHcCCHHHHHHH---HHhC-CCCC---ChhhHHHHHHHHHhcCChhHHHHH
Q 006388 397 HYFEIMVKEYGIRPIHDHY-T--CMIDILSRAGRLEEAKSF---INKM-PFPP---DAIGWATLLSSCRIHGNVEIGKWA 466 (647)
Q Consensus 397 ~~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~~-~~~p---~~~~~~~ll~~~~~~~~~~~a~~~ 466 (647)
.+++.........+..... + .++.-+...|..+.+.++ .... +..| ..........++...|+.+.|...
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 8887764321111111111 1 223333344433322222 1111 1101 112223455666778888888888
Q ss_pred HHHHhccCC---------CCchhHHHHHHhhhhCCChhHHHHHHHHHHhCC
Q 006388 467 AESLLELDP---------YNPASYVLLSSIYASKGKWDHVSQLRRTMREKG 508 (647)
Q Consensus 467 ~~~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 508 (647)
++.+....- .........+.++...|++++|.+.+......+
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 887654221 134555677788899999999999999887654
No 97
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.75 E-value=1.3e-07 Score=91.34 Aligned_cols=247 Identities=13% Similarity=0.058 Sum_probs=118.6
Q ss_pred HHHhcCCHHHHHHHHhcCCCC----ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH
Q 006388 218 MYCKCKSIKYAESVFRTMAWK----NVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEE 293 (647)
Q Consensus 218 ~y~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 293 (647)
-+.-.|.+..+..-.+ .... +......+.+++...|+++.++. ++.... .|.......+...+....+-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3444577777765444 2111 22344455667777776665442 222222 4544444444333333223233
Q ss_pred HHHHHHHHHHhCCC-cchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 006388 294 GTQFHGRSLVTGLI-SFITVSNALVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGL 372 (647)
Q Consensus 294 a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 372 (647)
+..-+......... .+..+......+|...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-- 160 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI-- 160 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence 32222222212211 22222233334444555555555555443 23333334444455555555555555555432
Q ss_pred CCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCChhhHHHH
Q 006388 373 KPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM--PFPPDAIGWATL 450 (647)
Q Consensus 373 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l 450 (647)
..| .+...+..+ .+..+.-.+.+.+|..+|+++ ...+++.+.+.+
T Consensus 161 ~eD-~~l~qLa~a--------------------------------wv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~ 207 (290)
T PF04733_consen 161 DED-SILTQLAEA--------------------------------WVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGL 207 (290)
T ss_dssp SCC-HHHHHHHHH--------------------------------HHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHH
T ss_pred CCc-HHHHHHHHH--------------------------------HHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 112 222222222 222222223466666666666 234556666777
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCCh-hHHHHHHHHHHh
Q 006388 451 LSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKW-DHVSQLRRTMRE 506 (647)
Q Consensus 451 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~ 506 (647)
..+....|++++|+.+++++++.+|.++.+...++-+....|+. +.+.+++.++++
T Consensus 208 A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 208 AVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777 556667776655
No 98
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=4e-05 Score=79.83 Aligned_cols=227 Identities=11% Similarity=0.131 Sum_probs=122.8
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 006388 241 VSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFY 320 (647)
Q Consensus 241 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 320 (647)
..|.-...-.-..|+.+.|+.+|...+. |-++....|-.|+.++|-++-++- .|....-.|.++|
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~Y 977 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMY 977 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHh
Confidence 3344444555567888888888876654 456666677788888887776542 3455556688888
Q ss_pred HhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcC---------------ChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006388 321 GKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFG---------------KANETIDLFEKMLSHGLKPDEVTLIGVLSA 385 (647)
Q Consensus 321 ~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g---------------~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 385 (647)
-..|++.+|..+|.+.. ++...|..+-.++ +.-.|-++|++. |.. +...+..
T Consensus 978 En~g~v~~Av~FfTrAq-----afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~~-----~~~AVmL 1044 (1416)
T KOG3617|consen 978 ENDGDVVKAVKFFTRAQ-----AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GGY-----AHKAVML 1044 (1416)
T ss_pred hhhHHHHHHHHHHHHHH-----HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---chh-----hhHHHHH
Confidence 88888888888887653 2222222222111 122233333321 111 1122234
Q ss_pred HhcCCcHHHHHHH---------HHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 006388 386 CSRAGLVEKGRHY---------FEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKMPFPPDAIGWATLLSSCRI 456 (647)
Q Consensus 386 ~~~~g~~~~a~~~---------~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~ 456 (647)
|-+.|.+.+|+++ ++-+.++..-..|+...+--.+.+....++++|..++-... -+..-+.. +.
T Consensus 1045 YHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar------~~~~Alql-C~ 1117 (1416)
T KOG3617|consen 1045 YHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR------EFSGALQL-CK 1117 (1416)
T ss_pred HHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH------HHHHHHHH-Hh
Confidence 5556666655543 22333332333345555555666666666666666655432 11222222 23
Q ss_pred cCChhHHHHHHHHHhcc---CCC---CchhHHHHHHhhhhCCChhHHHHHHH
Q 006388 457 HGNVEIGKWAAESLLEL---DPY---NPASYVLLSSIYASKGKWDHVSQLRR 502 (647)
Q Consensus 457 ~~~~~~a~~~~~~~~~~---~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~ 502 (647)
..++...+++.+.+.-. .|+ ....+..++..|.++|.|..|.+=|.
T Consensus 1118 ~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfT 1169 (1416)
T KOG3617|consen 1118 NRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFT 1169 (1416)
T ss_pred cCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHh
Confidence 34445555555544321 122 12456778888888888877766553
No 99
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=1.6e-05 Score=73.10 Aligned_cols=406 Identities=12% Similarity=0.024 Sum_probs=220.9
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCCC---CchHHHHHHHHHHhcCChHHHHHHhhcCCC--CCeehHHH-HHHHHHhCC
Q 006388 80 GSPLVDMYAKLGLIYDAKRGFDELPEK---NIVMYNTMITGLLRRGLVEESRRLFRGMKD--KDSISWTT-MITGLMQNG 153 (647)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~g 153 (647)
+++.+.-+.+..++.+|.+++..-.++ +....+.|...|-+..++..|...++++.. |...-|.. -...+.+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 455666667888888888888766653 445667777788888888888888887764 22222221 234566778
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHH--hcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 006388 154 LEREAIDLFREMRLEGLAMDQFTFGSVLTAC--GGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESV 231 (647)
Q Consensus 154 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 231 (647)
.+.+|+.+...|... |+...-..-+.+. ...+++..++.+.++.... .+..+.+...-...+.|+.+.|.+-
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHH
Confidence 888888888777542 2222222222222 2456666666666654321 2333444455556677777777777
Q ss_pred HhcCCCC----ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHhCC
Q 006388 232 FRTMAWK----NVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFT-LGSVISSCANLASLEEGTQFHGRSLVTGL 306 (647)
Q Consensus 232 ~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 306 (647)
|+...+- ...+||.-+.. .+.|+++.|+++..++.+.|++-.+.. ......+- ....+..-..++...
T Consensus 167 FqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegi-DvrsvgNt~~lh~Sa----- 239 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGI-DVRSVGNTLVLHQSA----- 239 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccC-chhcccchHHHHHHH-----
Confidence 7766542 34566655443 355677777777777777765422110 00000000 000000000011000
Q ss_pred CcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 006388 307 ISFITVSNALVTFYGKCGNIEDSHRLFNEMNVR-----DEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIG 381 (647)
Q Consensus 307 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 381 (647)
-+..+|.-.-.+.+.|+.+.|.+.+-.|+.+ |++|...+.-. -..+++.+..+-+.-+.+... -...||..
T Consensus 240 --l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFAN 315 (459)
T KOG4340|consen 240 --LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFAN 315 (459)
T ss_pred --HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHH
Confidence 1223344445567889999999999999855 77776655332 224556666666666665432 33469999
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHhcCC-CcChHHHHHHHHHHHH-cCCHHHHHHHHHhCCCCCChhhHHHHHHHH-HhcC
Q 006388 382 VLSACSRAGLVEKGRHYFEIMVKEYGI-RPIHDHYTCMIDILSR-AGRLEEAKSFINKMPFPPDAIGWATLLSSC-RIHG 458 (647)
Q Consensus 382 ll~a~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~-~~~~ 458 (647)
++-.|++..-++.|-.++.+-... -. -.+...|+ |++++.. .-..++|.+-++.....-....-..-+..- .++.
T Consensus 316 lLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~ 393 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHN 393 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999888888776432110 00 01222333 3344433 335566665554431000000000001110 1111
Q ss_pred C----hhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhC
Q 006388 459 N----VEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 459 ~----~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 507 (647)
+ ...+.+-++..+++.- .....-++.|.+..++..+.++|..-.+-
T Consensus 394 ~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 394 RDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred ccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 1 1223333444444431 34566778899999999999999876653
No 100
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.73 E-value=7.9e-07 Score=86.04 Aligned_cols=217 Identities=12% Similarity=0.084 Sum_probs=115.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccCCh
Q 006388 213 SALVDMYCKCKSIKYAESVFRTMAWKNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTL-GSVISSCANLASL 291 (647)
Q Consensus 213 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a~~~~~~~ 291 (647)
..+.++|...|+.+.+..-...-..+...+...+...+...++-+.++.-+++....+..++..++ ......+...|++
T Consensus 39 ~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~ 118 (290)
T PF04733_consen 39 FYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDY 118 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHH
T ss_pred HHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCH
Confidence 334556666666655444333333344444433333332223344444444433333322222222 2223445567777
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-hhhHHHHHHHHHH----cCChHHHHHHHHH
Q 006388 292 EEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVRD-EVSWTALVSGYAK----FGKANETIDLFEK 366 (647)
Q Consensus 292 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d-~~~~~~li~~~~~----~g~~~~A~~~~~~ 366 (647)
+.|.+++... .+.......+..|.+.++++.|.+.++.|.+-| -.+...+..++.. .+.+.+|..+|++
T Consensus 119 ~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~E 192 (290)
T PF04733_consen 119 EEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEE 192 (290)
T ss_dssp HHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred HHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 7777766432 344555678899999999999999999998442 2233334443322 2358888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCH-HHHHHHHHhC
Q 006388 367 MLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRL-EEAKSFINKM 438 (647)
Q Consensus 367 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~ 438 (647)
+.+. ..++..+.+.+..+....|++++|.++++..... -+-+..+...++-+..-.|+. +.+.+++.++
T Consensus 193 l~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 193 LSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 7654 4566677777777777777888777777665432 122334444444444445544 4444555554
No 101
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=3.9e-05 Score=76.57 Aligned_cols=430 Identities=11% Similarity=0.015 Sum_probs=220.2
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCc-hhhHHHHHHHHHhcCC
Q 006388 14 SGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSY-VFVGSPLVDMYAKLGL 92 (647)
Q Consensus 14 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~ 92 (647)
.+....|+++.|+.+|.+..... |+|...|+.=..+++..|++++|.+=-.+-++.. |+ .--|+-+-.++.-.|+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--CchhhHHHHhHHHHHhccc
Confidence 44567889999999999888877 7788888888888999998888876555554443 33 3445666666667788
Q ss_pred hHHHHHHhccCCCC---CchHHHHHHHHHHhcCChHHHHHHhhcCCCCCeehHHHHH-----HHHHhCCChhHHHHHHHH
Q 006388 93 IYDAKRGFDELPEK---NIVMYNTMITGLLRRGLVEESRRLFRGMKDKDSISWTTMI-----TGLMQNGLEREAIDLFRE 164 (647)
Q Consensus 93 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~ 164 (647)
+++|...|.+-.+. |...++-+..++ ..+.+. -+... ++..|..+. +.+...-.+..-++.++.
T Consensus 86 ~~eA~~ay~~GL~~d~~n~~L~~gl~~a~----~~~~~~--~~~~~--~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~ 157 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPSNKQLKTGLAQAY----LEDYAA--DQLFT--KPYFHEKLANLPLTNYSLSDPAYVKILEIIQK 157 (539)
T ss_pred HHHHHHHHHHHhhcCCchHHHHHhHHHhh----hHHHHh--hhhcc--CcHHHHHhhcChhhhhhhccHHHHHHHHHhhc
Confidence 88888888877653 334455555554 111111 00000 111121111 111111111111111111
Q ss_pred HHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-C-----
Q 006388 165 MRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMAW-K----- 238 (647)
Q Consensus 165 m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~----- 238 (647)
- |+.. ..+. +.....+.+..+...+.. .....-..+...+.... +..... +
T Consensus 158 ~------p~~l------~~~l---~d~r~m~a~~~l~~~~~~----~~~~~~~~~~~~~~~p~----~~~~~~~~~~~d~ 214 (539)
T KOG0548|consen 158 N------PTSL------KLYL---NDPRLMKADGQLKGVDEL----LFYASGIEILASMAEPC----KQEHNGFPIIEDN 214 (539)
T ss_pred C------cHhh------hccc---ccHHHHHHHHHHhcCccc----cccccccccCCCCCCcc----cccCCCCCccchh
Confidence 0 0000 0000 011111111111100000 00000000000000000 000000 0
Q ss_pred --------ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhccCChHHHHHHHHHHHHhCCCc-
Q 006388 239 --------NVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLG-SVISSCANLASLEEGTQFHGRSLVTGLIS- 308 (647)
Q Consensus 239 --------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~~~~~~a~~~~~~~~~~~~~~- 308 (647)
-..-.-.+.++.-+..+++.|++-+....... ...||. ..-.++...|........-...++.|...
T Consensus 215 ~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~r 291 (539)
T KOG0548|consen 215 TEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELR 291 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHH
Confidence 00112334444444555555555555544432 222222 22233344444333333322222222110
Q ss_pred -----chhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHH
Q 006388 309 -----FITVSNALVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEV-TLIGV 382 (647)
Q Consensus 309 -----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~l 382 (647)
-......+...|.+.++++.|...|++...+... -....+....++++...+...- +.|... -...-
T Consensus 292 ad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~k 364 (539)
T KOG0548|consen 292 ADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREK 364 (539)
T ss_pred HHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHH
Confidence 0111122445777788888888888875422111 1112233345555555554443 334432 22222
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCCh
Q 006388 383 LSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPPD-AIGWATLLSSCRIHGNV 460 (647)
Q Consensus 383 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~ 460 (647)
...+.+.|++..|...|.++++. -+-|...|....-+|.+.|.+.+|++-.+.. ...|+ ...|.--..++....++
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~y 442 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEY 442 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 55677889999999999999874 3556788999999999999999998877665 45555 45566666667777899
Q ss_pred hHHHHHHHHHhccCCCCchhHHHHHHhhhh
Q 006388 461 EIGKWAAESLLELDPYNPASYVLLSSIYAS 490 (647)
Q Consensus 461 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 490 (647)
+.|.+.|++.++.+|.+......+...+..
T Consensus 443 dkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 443 DKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 999999999999999887666666555544
No 102
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.64 E-value=5.1e-05 Score=71.30 Aligned_cols=308 Identities=12% Similarity=0.073 Sum_probs=165.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHH---HHHhcCCChHHHHHHHHHHHHcCCCCchhHH-HHHHH
Q 006388 142 WTTMITGLMQNGLEREAIDLFREMRLEGLAMDQFTFGSVL---TACGGLLALEEGKQIHAFIIRNDHKDNVFVG-SALVD 217 (647)
Q Consensus 142 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll---~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~ 217 (647)
---+-..+...|++..|+..|...++- |...|.++. ..|...|....|..-+..+++. .||-... .--..
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhch
Confidence 335677778888888998888887663 334444444 3466677777777777777664 4543221 12234
Q ss_pred HHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 006388 218 MYCKCKSIKYAESVFRTMAWKNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQF 297 (647)
Q Consensus 218 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 297 (647)
.+.+.|.++.|..-|+.+.+.++.- +....++.+ +.+.+++ ......+..+...|+...+..+
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqsk-------l~~~~e~---------~~l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSK-------LALIQEH---------WVLVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHH-------HHhHHHH---------HHHHHHHHHHhcCCchhhHHHH
Confidence 5667778888877777766443210 000011111 0011111 1122233334455666666666
Q ss_pred HHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 006388 298 HGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMN---VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKP 374 (647)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 374 (647)
...+++.. +.|...+..-..+|...|++..|..-++... ..+....--+-..+...|+.+.++...++-++ +.|
T Consensus 178 i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldp 254 (504)
T KOG0624|consen 178 ITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDP 254 (504)
T ss_pred HHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCc
Confidence 66666653 4466666666777777777777765555443 34555555556666677777777777777665 456
Q ss_pred CHHH-HHH---H---------HHHHhcCCcHHHHHHHHHHHHHhcCCCcC-----hHHHHHHHHHHHHcCCHHHHHHHHH
Q 006388 375 DEVT-LIG---V---------LSACSRAGLVEKGRHYFEIMVKEYGIRPI-----HDHYTCMIDILSRAGRLEEAKSFIN 436 (647)
Q Consensus 375 ~~~t-~~~---l---------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~ 436 (647)
|... |.. + +......+.+.++.+..+...+. .|. ...+..+-..+...|++.+|++...
T Consensus 255 dHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 255 DHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 6541 111 0 01122334444444444444332 222 1223334444555566666665555
Q ss_pred hC-CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 006388 437 KM-PFPPD-AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNP 478 (647)
Q Consensus 437 ~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 478 (647)
+. .+.|| +.++---..+|.....++.|+.-|+++.+.+|+|.
T Consensus 332 evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 332 EVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred HHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 44 34444 55555555556555666666666666666666543
No 103
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.63 E-value=0.00013 Score=74.37 Aligned_cols=196 Identities=11% Similarity=-0.005 Sum_probs=96.7
Q ss_pred ehHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCChhhHH-HHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHH---H
Q 006388 140 ISWTTMITGLMQNGLEREAIDLFREMRLEGL-AMDQFTFG-SVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGS---A 214 (647)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~---~ 214 (647)
..|..+...+...|+.+.+...+....+... .++..... .....+...|+++++.++++..++.. +.+...+. .
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHH
Confidence 3455555566666666666555555443211 12211111 11223345667777777777766653 22333332 1
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCC---hhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 006388 215 LVDMYCKCKSIKYAESVFRTMAWKN---VVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASL 291 (647)
Q Consensus 215 li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 291 (647)
+.......+..+.+.+.++.....+ ......+...+...|++++|...+++..+.. +.+...+..+..++...|++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCH
Confidence 1222222344555555554422222 2233344456667777777777777776642 22234445555555666666
Q ss_pred HHHHHHHHHHHHhCC-Ccch--hHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 006388 292 EEGTQFHGRSLVTGL-ISFI--TVSNALVTFYGKCGNIEDSHRLFNEMN 337 (647)
Q Consensus 292 ~~a~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~ 337 (647)
++|...+....+... .++. ..+..+...+...|++++|..++++..
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 666666665554321 1111 223345555566666666666665543
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.63 E-value=4.1e-05 Score=88.56 Aligned_cols=323 Identities=10% Similarity=0.008 Sum_probs=202.3
Q ss_pred cCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC----CC----C--h--hHHHHHHHHHHhc
Q 006388 186 GLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMA----WK----N--V--VSWTAMLVGYGQN 253 (647)
Q Consensus 186 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~----~--~--~~~~~li~~~~~~ 253 (647)
..|+++.....+..+.......+..........+...|++++|...++... .. + . .....+...+...
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 445555555555443111111223333444556667889999888876542 11 1 1 1122233456678
Q ss_pred CChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHHHh----CC-CcchhHHHHHHHHHHhcC
Q 006388 254 GCSEEAVKIFCNMQRNGIEPDD----FTLGSVISSCANLASLEEGTQFHGRSLVT----GL-ISFITVSNALVTFYGKCG 324 (647)
Q Consensus 254 g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g 324 (647)
|++++|...+++....--..+. ...+.+...+...|+++.|...+...... +- .........+...+...|
T Consensus 466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G 545 (903)
T PRK04841 466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG 545 (903)
T ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence 9999999999988763111121 23344455567789999999988887653 21 112334556677888899
Q ss_pred CHHHHHHHHhhcCC-------C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHhcC
Q 006388 325 NIEDSHRLFNEMNV-------R----DEVSWTALVSGYAKFGKANETIDLFEKMLSH--GLKPD--EVTLIGVLSACSRA 389 (647)
Q Consensus 325 ~~~~A~~~~~~~~~-------~----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll~a~~~~ 389 (647)
++++|...+++... + ....+..+...+...|++++|...+.+.... ...+. ...+..+.......
T Consensus 546 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 625 (903)
T PRK04841 546 FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLAR 625 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHc
Confidence 99999988876531 1 1223445556677789999999999887653 11222 22444455667789
Q ss_pred CcHHHHHHHHHHHHHhcCCCcChHHH-----HHHHHHHHHcCCHHHHHHHHHhCCCC--CCh----hhHHHHHHHHHhcC
Q 006388 390 GLVEKGRHYFEIMVKEYGIRPIHDHY-----TCMIDILSRAGRLEEAKSFINKMPFP--PDA----IGWATLLSSCRIHG 458 (647)
Q Consensus 390 g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~--p~~----~~~~~ll~~~~~~~ 458 (647)
|+.++|.+.++..............+ ...+..+...|+.+.|.+++...... ... ..+..+..++...|
T Consensus 626 G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 705 (903)
T PRK04841 626 GDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLG 705 (903)
T ss_pred CCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcC
Confidence 99999999988875421111111111 11224456689999999998776211 111 12445666788899
Q ss_pred ChhHHHHHHHHHhccCC------CCchhHHHHHHhhhhCCChhHHHHHHHHHHhCC
Q 006388 459 NVEIGKWAAESLLELDP------YNPASYVLLSSIYASKGKWDHVSQLRRTMREKG 508 (647)
Q Consensus 459 ~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 508 (647)
+.++|...++++.+... ....++..++.+|...|+.++|...+.+..+..
T Consensus 706 ~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 706 QFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999998876421 123467788899999999999999999987654
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.61 E-value=0.00013 Score=84.40 Aligned_cols=359 Identities=9% Similarity=-0.044 Sum_probs=220.9
Q ss_pred HHHHhcCChHHHHHHhhcCCCCCeeh--HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHH
Q 006388 116 TGLLRRGLVEESRRLFRGMKDKDSIS--WTTMITGLMQNGLEREAIDLFREMRLEGLAMDQFTFGSVLTACGGLLALEEG 193 (647)
Q Consensus 116 ~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a 193 (647)
..+...|++.+|..........+... ...........|+++.+...+..+.......+..........+...|+++++
T Consensus 349 ~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a 428 (903)
T PRK04841 349 EAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEV 428 (903)
T ss_pred HHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHH
Confidence 34455666666666655554332111 1111223455677777777776653221111222223334445577899999
Q ss_pred HHHHHHHHHcCCC------Cc--hhHHHHHHHHHHhcCCHHHHHHHHhcCCC----CCh----hHHHHHHHHHHhcCChh
Q 006388 194 KQIHAFIIRNDHK------DN--VFVGSALVDMYCKCKSIKYAESVFRTMAW----KNV----VSWTAMLVGYGQNGCSE 257 (647)
Q Consensus 194 ~~~~~~~~~~g~~------~~--~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~----~~~~~li~~~~~~g~~~ 257 (647)
...+....+.--. +. ......+...+...|++++|...+++... .+. .+++.+...+...|+++
T Consensus 429 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~ 508 (903)
T PRK04841 429 NTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELA 508 (903)
T ss_pred HHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHH
Confidence 8888877543111 11 12223344566788999999988877532 222 34566677788899999
Q ss_pred HHHHHHHHHHHCCC---CCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHh----CCC---cchhHHHHHHHHHHhcCC
Q 006388 258 EAVKIFCNMQRNGI---EPD--DFTLGSVISSCANLASLEEGTQFHGRSLVT----GLI---SFITVSNALVTFYGKCGN 325 (647)
Q Consensus 258 ~A~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~---~~~~~~~~li~~~~~~g~ 325 (647)
+|...+.+.....- .+. ..++..+...+...|+++.|...+.+.... +.. .....+..+...+...|+
T Consensus 509 ~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~ 588 (903)
T PRK04841 509 RALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWAR 588 (903)
T ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcC
Confidence 99999988764311 111 234445556677899999999988876553 211 123345556677788899
Q ss_pred HHHHHHHHhhcCC------C--ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHH-----HHHHHHHhcCCc
Q 006388 326 IEDSHRLFNEMNV------R--DEVSWTALVSGYAKFGKANETIDLFEKMLSHGLK-PDEVTL-----IGVLSACSRAGL 391 (647)
Q Consensus 326 ~~~A~~~~~~~~~------~--d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~-----~~ll~a~~~~g~ 391 (647)
+++|...+++... + ....+..+...+...|++++|.+.+.+....... .....+ ...+..+...|+
T Consensus 589 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 668 (903)
T PRK04841 589 LDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGD 668 (903)
T ss_pred HHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCC
Confidence 9999988887631 1 1334455666788899999999999887542111 111111 111234455789
Q ss_pred HHHHHHHHHHHHHhcCCCcCh----HHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-hhhHHHHHHHHHhcCC
Q 006388 392 VEKGRHYFEIMVKEYGIRPIH----DHYTCMIDILSRAGRLEEAKSFINKM-------PFPPD-AIGWATLLSSCRIHGN 459 (647)
Q Consensus 392 ~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~ll~~~~~~~~ 459 (647)
.+.|.+++...... . .... ..+..+..++...|+.++|...+++. +..++ ..+...+..++...|+
T Consensus 669 ~~~A~~~l~~~~~~-~-~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~ 746 (903)
T PRK04841 669 KEAAANWLRQAPKP-E-FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGR 746 (903)
T ss_pred HHHHHHHHHhcCCC-C-CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCC
Confidence 99999887665421 1 1111 11345677888999999999988876 22222 3456677778899999
Q ss_pred hhHHHHHHHHHhccCCC
Q 006388 460 VEIGKWAAESLLELDPY 476 (647)
Q Consensus 460 ~~~a~~~~~~~~~~~p~ 476 (647)
.++|...+.+++++...
T Consensus 747 ~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 747 KSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHHHHhCc
Confidence 99999999999987654
No 106
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.60 E-value=4.5e-06 Score=91.52 Aligned_cols=201 Identities=14% Similarity=0.169 Sum_probs=166.1
Q ss_pred CcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC--------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 006388 307 ISFITVSNALVTFYGKCGNIEDSHRLFNEMNVR--------DEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVT 378 (647)
Q Consensus 307 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 378 (647)
+.....|-..+......+++++|++++++.... -...|.+++..-...|.-+...++|++..+. .-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 445667777788888888999999888887522 2457888888888888888899999999874 222447
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---ChhhHHHHHHHH
Q 006388 379 LIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP---DAIGWATLLSSC 454 (647)
Q Consensus 379 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~ 454 (647)
|..|+.-|.+.+.+++|.++++.|.++++ -....|..+++.+.+..+-++|.+++.++ ..-| ......-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88889999999999999999999999776 56678999999999999999999999877 2223 355566666667
Q ss_pred HhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhCCCcc
Q 006388 455 RIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREKGVRK 511 (647)
Q Consensus 455 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 511 (647)
.++|+.+++..+|+..+...|.....|..+++.=.+.|..+.++.+|++....++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 889999999999999999999999999999999999999999999999999888754
No 107
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.58 E-value=5.8e-06 Score=78.67 Aligned_cols=179 Identities=12% Similarity=0.039 Sum_probs=114.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-Ch---hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----H
Q 006388 309 FITVSNALVTFYGKCGNIEDSHRLFNEMNV--R-DE---VSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEV----T 378 (647)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-d~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t 378 (647)
....+..+...+.+.|++++|...|+++.. | +. .+|..+..+|.+.|++++|+..++++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 344556667777777888888877776652 2 21 35566677777778888888888877764 23221 3
Q ss_pred HHHHHHHHhcC--------CcHHHHHHHHHHHHHhcCCCcCh-HHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhhHHH
Q 006388 379 LIGVLSACSRA--------GLVEKGRHYFEIMVKEYGIRPIH-DHYTCMIDILSRAGRLEEAKSFINKMPFPPDAIGWAT 449 (647)
Q Consensus 379 ~~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 449 (647)
+..+..++... |+.++|.+.|+.+.+. .|+. ..+..+... +...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHH
Confidence 33344444433 5677777777777654 2332 122211111 0000000 001124
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCC---chhHHHHHHhhhhCCChhHHHHHHHHHHhC
Q 006388 450 LLSSCRIHGNVEIGKWAAESLLELDPYN---PASYVLLSSIYASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 450 ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 507 (647)
+...+...|++++|...++++++..|++ +..+..++.+|.+.|++++|..+++.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5566888999999999999999987754 478899999999999999999999988764
No 108
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.57 E-value=0.0012 Score=66.13 Aligned_cols=128 Identities=11% Similarity=0.128 Sum_probs=85.3
Q ss_pred CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHHH
Q 006388 4 HDGVSWNLLISGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSPL 83 (647)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 83 (647)
-|+.+|+.||.-+... .++++.+.++++...- |-....|..-+..-....+++....+|.+.+..-+ +...|...
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F--P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lY 92 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF--PSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLY 92 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC--CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHH
Confidence 3688999999987666 9999999999998653 66777888889999999999999999999887654 34455554
Q ss_pred HHHHHh-cCChHHHHH----HhccCC------CCCchHHHHHHHH---------HHhcCChHHHHHHhhcCCC
Q 006388 84 VDMYAK-LGLIYDAKR----GFDELP------EKNIVMYNTMITG---------LLRRGLVEESRRLFRGMKD 136 (647)
Q Consensus 84 i~~~~~-~g~~~~A~~----~~~~~~------~~~~~~~~~li~~---------~~~~g~~~~A~~~~~~~~~ 136 (647)
++---+ .|+...++. .|+-.. -..-..|+..+.- +....+++..+++++++..
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 442211 233333221 222111 1223345555432 3355677888888888765
No 109
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.56 E-value=4.2e-06 Score=76.41 Aligned_cols=119 Identities=11% Similarity=0.074 Sum_probs=99.8
Q ss_pred CCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHH-HhcCC--hhHH
Q 006388 389 AGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSC-RIHGN--VEIG 463 (647)
Q Consensus 389 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~-~~~~~--~~~a 463 (647)
.++.+++...++...+ .-+.+...|..+...|...|++++|...+++. ...| +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 5667777777777765 33567788999999999999999999999988 4556 477788887764 67676 5999
Q ss_pred HHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhCCC
Q 006388 464 KWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREKGV 509 (647)
Q Consensus 464 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 509 (647)
..+++++++.+|+++.++..++..+...|++++|...++++.+..-
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999987543
No 110
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.54 E-value=0.00047 Score=65.01 Aligned_cols=305 Identities=10% Similarity=0.037 Sum_probs=171.1
Q ss_pred HHHHHhcCChHHHHHHhhcCCCCCeehHHHHHH---HHHhCCChhHHHHHHHHHHHCCCCCChhhHH-HHHHHHhcCCCh
Q 006388 115 ITGLLRRGLVEESRRLFRGMKDKDSISWTTMIT---GLMQNGLEREAIDLFREMRLEGLAMDQFTFG-SVLTACGGLLAL 190 (647)
Q Consensus 115 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~-~ll~~~~~~~~~ 190 (647)
.+.+.-.|++..|+.-|....+-|+..|.++.+ .|...|+...|+.=|.+..+ ++||-..-. --...+.+.|.+
T Consensus 45 Gk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 45 GKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcccH
Confidence 334444555555555555555656666655543 56667777777777777666 456643211 112234567788
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 006388 191 EEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMAWKNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNG 270 (647)
Q Consensus 191 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 270 (647)
+.|..-|+.+++.....+. ...++.+.-..++-+.+ ...+..+..+|+...|+.....+.+-.
T Consensus 123 e~A~~DF~~vl~~~~s~~~-----~~eaqskl~~~~e~~~l------------~~ql~s~~~~GD~~~ai~~i~~llEi~ 185 (504)
T KOG0624|consen 123 EQAEADFDQVLQHEPSNGL-----VLEAQSKLALIQEHWVL------------VQQLKSASGSGDCQNAIEMITHLLEIQ 185 (504)
T ss_pred HHHHHHHHHHHhcCCCcch-----hHHHHHHHHhHHHHHHH------------HHHHHHHhcCCchhhHHHHHHHHHhcC
Confidence 8888888877776421111 11222222111111111 122333444556666666655555531
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh------hH
Q 006388 271 IEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVRDEV------SW 344 (647)
Q Consensus 271 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~------~~ 344 (647)
+.|...+..-..+|...|.+..|..=+....+..-. ++...--+...+.+.|+.+.++...++..+-|+. .|
T Consensus 186 -~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~Y 263 (504)
T KOG0624|consen 186 -PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFY 263 (504)
T ss_pred -cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHH
Confidence 334444445555555556655555544444444322 2223333455555666666666665555422211 11
Q ss_pred HHH---------HHHHHHcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcC-
Q 006388 345 TAL---------VSGYAKFGKANETIDLFEKMLSHGLKPDEVT---LIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPI- 411 (647)
Q Consensus 345 ~~l---------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~- 411 (647)
-.+ +......+++.++++..+...+.......++ +..+-.++...|.+.+|++...+.. .+.|+
T Consensus 264 KklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL---~~d~~d 340 (504)
T KOG0624|consen 264 KKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL---DIDPDD 340 (504)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH---hcCchH
Confidence 111 1233556788888888888777533322333 3445556777899999999988886 55666
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 006388 412 HDHYTCMIDILSRAGRLEEAKSFINKM-PFPPD 443 (647)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 443 (647)
+.++.--.++|.-...+++|+.-|+.+ ...++
T Consensus 341 v~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 341 VQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 788888889999999999999999888 34443
No 111
>PF12854 PPR_1: PPR repeat
Probab=98.52 E-value=1.5e-07 Score=57.82 Aligned_cols=33 Identities=27% Similarity=0.449 Sum_probs=26.3
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 006388 204 DHKDNVFVGSALVDMYCKCKSIKYAESVFRTMA 236 (647)
Q Consensus 204 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 236 (647)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888888774
No 112
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.50 E-value=3.4e-06 Score=72.82 Aligned_cols=120 Identities=9% Similarity=0.045 Sum_probs=75.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC
Q 006388 363 LFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFP 441 (647)
Q Consensus 363 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 441 (647)
+|++..+ +.|+. +.....++...|++++|...|+.... --+.+...|..+..++.+.|++++|...|++. ...
T Consensus 15 ~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 15 ILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4444444 23443 33445566667777777777776653 22335566667777777777777777777766 333
Q ss_pred C-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhh
Q 006388 442 P-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIY 488 (647)
Q Consensus 442 p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 488 (647)
| +...|..+..++...|+.++|+..++++++..|+++..+...+.+.
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 4 4666777777777777777777777777777777776666655544
No 113
>PLN02789 farnesyltranstransferase
Probab=98.47 E-value=7.2e-05 Score=73.51 Aligned_cols=224 Identities=12% Similarity=0.093 Sum_probs=133.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 006388 242 SWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYG 321 (647)
Q Consensus 242 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 321 (647)
++..+-..+...++.++|+.++.++.+. .|+..| +|+.-..++.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~yt----------------------------------aW~~R~~iL~ 82 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYT----------------------------------VWHFRRLCLE 82 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHH----------------------------------HHHHHHHHHH
Confidence 4555555566666777777777766653 444432 2222222222
Q ss_pred hcC-CHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCCh--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHH
Q 006388 322 KCG-NIEDSHRLFNEMN---VRDEVSWTALVSGYAKFGKA--NETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKG 395 (647)
Q Consensus 322 ~~g-~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 395 (647)
+.| ++++++..++++. .++..+|+.....+.+.|+. ++++.+++++.+.. +-|...|.....++.+.|+++++
T Consensus 83 ~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~ee 161 (320)
T PLN02789 83 ALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDE 161 (320)
T ss_pred HcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHH
Confidence 233 3455555555443 22344555444444444442 55667776776642 22344666666666677777777
Q ss_pred HHHHHHHHHhcCCCcChHHHHHHHHHHHHc---CC----HHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhc----CChhH
Q 006388 396 RHYFEIMVKEYGIRPIHDHYTCMIDILSRA---GR----LEEAKSFINKM-PFPP-DAIGWATLLSSCRIH----GNVEI 462 (647)
Q Consensus 396 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~----~~~~~ 462 (647)
++.++.+++. -.-+...|+....++.+. |. .+++.++..++ ...| |...|+-+...+... ++..+
T Consensus 162 L~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~ 239 (320)
T PLN02789 162 LEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPE 239 (320)
T ss_pred HHHHHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchh
Confidence 7777777653 123344555554444443 22 24566666444 4455 478899888888773 34567
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHhhhhCC------------------ChhHHHHHHHHH
Q 006388 463 GKWAAESLLELDPYNPASYVLLSSIYASKG------------------KWDHVSQLRRTM 504 (647)
Q Consensus 463 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m 504 (647)
|...+.++...+|.++.++..|+++|+... ..++|.++++.+
T Consensus 240 ~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 240 VSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred HHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 888889988889999999999999998643 236677777777
No 114
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.47 E-value=7.6e-06 Score=70.64 Aligned_cols=99 Identities=11% Similarity=-0.041 Sum_probs=88.4
Q ss_pred CCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHH
Q 006388 408 IRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLS 485 (647)
Q Consensus 408 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 485 (647)
+.|+ .+..+...+...|++++|.+.|+.. ...| +...|..+..++...|++++|...++++++++|+++..+..++
T Consensus 22 ~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg 99 (144)
T PRK15359 22 VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG 99 (144)
T ss_pred cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 3454 3556788899999999999999987 4555 5889999999999999999999999999999999999999999
Q ss_pred HhhhhCCChhHHHHHHHHHHhCC
Q 006388 486 SIYASKGKWDHVSQLRRTMREKG 508 (647)
Q Consensus 486 ~~~~~~g~~~~a~~~~~~m~~~g 508 (647)
.++...|++++|...+++..+..
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999987743
No 115
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.44 E-value=5.6e-06 Score=70.17 Aligned_cols=118 Identities=8% Similarity=0.022 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhh
Q 006388 412 HDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYA 489 (647)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 489 (647)
.+..-.+...+...|++++|..+|+-. ...| +...|-.|...|...|++++|+..|.++..++|++|.++..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 344556667778999999999999987 4555 47889999999999999999999999999999999999999999999
Q ss_pred hCCChhHHHHHHHHHHhCCCccCCCcceEeEcCeEEEEEecCCCCcchHHHHHHHHHHHHhhH
Q 006388 490 SKGKWDHVSQLRRTMREKGVRKDPGCSWIKYKSRVHIFSADDWSSPYSDQIYAELEKLNRKMI 552 (647)
Q Consensus 490 ~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~ 552 (647)
..|+.+.|.+.|+......- .+|+..++..+++..+..+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~~-----------------------~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRICG-----------------------EVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHHHhc-----------------------cChhHHHHHHHHHHHHHHhh
Confidence 99999999999998766321 35666667667776666654
No 116
>PF12854 PPR_1: PPR repeat
Probab=98.43 E-value=4.3e-07 Score=55.77 Aligned_cols=32 Identities=34% Similarity=0.562 Sum_probs=22.2
Q ss_pred CCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006388 407 GIRPIHDHYTCMIDILSRAGRLEEAKSFINKM 438 (647)
Q Consensus 407 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 438 (647)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777666
No 117
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.41 E-value=6.1e-05 Score=75.94 Aligned_cols=214 Identities=16% Similarity=0.147 Sum_probs=151.9
Q ss_pred hcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChhHHHH
Q 006388 185 GGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMAW---KNVVSWTAMLVGYGQNGCSEEAVK 261 (647)
Q Consensus 185 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 261 (647)
.+.|++.+|.-.|+..++.. +.+...|..|...-...++-..|+..+++..+ .|..+.-+|...|...|.-.+|++
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 46677888888888887765 55677888888888888888888888887654 356677777888888888888998
Q ss_pred HHHHHHHCCCC-----C---CHHHHHHHHHHHhccCChHHHHHHHHHH-HHhCCCcchhHHHHHHHHHHhcCCHHHHHHH
Q 006388 262 IFCNMQRNGIE-----P---DDFTLGSVISSCANLASLEEGTQFHGRS-LVTGLISFITVSNALVTFYGKCGNIEDSHRL 332 (647)
Q Consensus 262 ~~~~m~~~g~~-----p---~~~t~~~ll~a~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 332 (647)
.++.-.....+ + +..+-.. ..+.....+....++|-.+ ...+..+|+.+...|.-.|--.|++++|...
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 88887654210 0 0000000 1111222233334444443 4445557888888888889999999999999
Q ss_pred HhhcC--CC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHHHHH
Q 006388 333 FNEMN--VR-DEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEV-TLIGVLSACSRAGLVEKGRHYFEIMV 403 (647)
Q Consensus 333 ~~~~~--~~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~ 403 (647)
|+... +| |...||.|...++...+.++|+..|++.++ ++|+-+ ....|.-+|...|.+++|...|-..+
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 98876 33 778899999999999999999999999888 578866 45556667888888888887776554
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.40 E-value=1.8e-05 Score=72.02 Aligned_cols=136 Identities=17% Similarity=0.161 Sum_probs=108.6
Q ss_pred CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCChhhHHH
Q 006388 372 LKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM--PFPPDAIGWAT 449 (647)
Q Consensus 372 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ 449 (647)
..|+......+-.++...|+-+....+...... ....+......++....+.|++.+|...+.+. +-+||...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 355544335555677777887777777766543 33445566677888999999999999999888 45567889999
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhCCC
Q 006388 450 LLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREKGV 509 (647)
Q Consensus 450 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 509 (647)
+.-+|-+.|+++.|...+.+++++.|.++.++.+|+..|.-.|+++.|..++......+-
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999988766443
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.36 E-value=4e-05 Score=72.87 Aligned_cols=182 Identities=12% Similarity=0.043 Sum_probs=126.6
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC-c-chhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-Chh---hHH
Q 006388 274 DDFTLGSVISSCANLASLEEGTQFHGRSLVTGLI-S-FITVSNALVTFYGKCGNIEDSHRLFNEMNV--R-DEV---SWT 345 (647)
Q Consensus 274 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-d~~---~~~ 345 (647)
....+......+...|+++.|...++.+.+.... + ....+..+...|.+.|++++|...++++.. | +.. ++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4566777778888999999999999998876421 1 124667788999999999999999999862 2 222 455
Q ss_pred HHHHHHHHc--------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHH
Q 006388 346 ALVSGYAKF--------GKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTC 417 (647)
Q Consensus 346 ~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 417 (647)
.+..++.+. |+.++|.+.|+++... .|+.......+..... . .... ......
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~---~------~~~~---------~~~~~~ 171 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY---L------RNRL---------AGKELY 171 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH---H------HHHH---------HHHHHH
Confidence 566666654 7889999999999875 4554321111110000 0 0000 011235
Q ss_pred HHHHHHHcCCHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 006388 418 MIDILSRAGRLEEAKSFINKM----PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDP 475 (647)
Q Consensus 418 li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 475 (647)
+.+.|.+.|++++|...+++. |..| ....|..+..++...|++++|...++.+....|
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 667788999999999988876 3233 356888999999999999999998888776655
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.35 E-value=5.1e-05 Score=78.43 Aligned_cols=192 Identities=9% Similarity=0.085 Sum_probs=113.9
Q ss_pred CcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006388 307 ISFITVSNALVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSAC 386 (647)
Q Consensus 307 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 386 (647)
+|-...-..+.+.+.+.|-...|..+|+++ ..|.-.|-+|...|+..+|..+..+-.+ -+||..-|..+.+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 343444444555555555555555555543 3444455555555555555555555444 244555555554444
Q ss_pred hcC----------------------------CcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006388 387 SRA----------------------------GLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM 438 (647)
Q Consensus 387 ~~~----------------------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 438 (647)
... ++++++.+.|+.-.+-+ +....+|-.+..+..+.++++.|.+.|...
T Consensus 468 ~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred cChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 444 44445544444433221 112345555555666777777777777665
Q ss_pred -CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhC
Q 006388 439 -PFPPD-AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 439 -~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 507 (647)
...|| ...||.+-.+|.+.++-.+|...++++++.+-++...+.+..-...+.|.|++|.+.+.++.+.
T Consensus 546 vtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 546 VTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred hhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 45665 6677777777777777777777777777777666666666666777777777777777777653
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.34 E-value=1.7e-05 Score=81.81 Aligned_cols=155 Identities=15% Similarity=0.127 Sum_probs=124.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHH
Q 006388 343 SWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDIL 422 (647)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 422 (647)
.-..+...+...|-...|+.+|++... +..++.+|...|+..+|..+...-.+ -+|++..|..+.|..
T Consensus 400 ~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~le---k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELE---KDPDPRLYCLLGDVL 467 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhc---CCCcchhHHHhhhhc
Confidence 344567788899999999999998754 45678889999999999988876654 378888888887754
Q ss_pred HHc----------------------------CCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhc
Q 006388 423 SRA----------------------------GRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLE 472 (647)
Q Consensus 423 ~~~----------------------------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 472 (647)
... ++++++.+.|+.- .+.| ...+|-.+..+..+.++++.|.+.|.+...
T Consensus 468 ~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt 547 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT 547 (777)
T ss_pred cChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh
Confidence 443 4445555555432 3344 366888888888899999999999999999
Q ss_pred cCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhCCC
Q 006388 473 LDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREKGV 509 (647)
Q Consensus 473 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 509 (647)
++|++...|++++.+|.+.|+-.+|...+++..+-+.
T Consensus 548 L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 548 LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 9999999999999999999999999999999887663
No 122
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.32 E-value=6.1e-05 Score=68.80 Aligned_cols=156 Identities=8% Similarity=0.063 Sum_probs=112.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHH
Q 006388 316 LVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKG 395 (647)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 395 (647)
-+-.|.+.|+++.+....+.+..+. ..|...++.++++..+++..+.. +.|...|..+...|...|++++|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3456777888777655544332221 01122566678888888777642 44555788888889999999999
Q ss_pred HHHHHHHHHhcCCCcChHHHHHHHHHH-HHcCC--HHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 006388 396 RHYFEIMVKEYGIRPIHDHYTCMIDIL-SRAGR--LEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESL 470 (647)
Q Consensus 396 ~~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 470 (647)
...|+...+- .+.+...+..+..++ .+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..++++
T Consensus 93 ~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 93 LLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999988753 233667788888864 67777 58999999988 4555 4778888888999999999999999999
Q ss_pred hccCCCCchhHH
Q 006388 471 LELDPYNPASYV 482 (647)
Q Consensus 471 ~~~~p~~~~~~~ 482 (647)
+++.|++..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 999987654443
No 123
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.30 E-value=0.00018 Score=79.54 Aligned_cols=217 Identities=13% Similarity=0.121 Sum_probs=164.0
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHHcC-C---CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-C-hhHHHHHH
Q 006388 174 QFTFGSVLTACGGLLALEEGKQIHAFIIRND-H---KDNVFVGSALVDMYCKCKSIKYAESVFRTMAWK-N-VVSWTAML 247 (647)
Q Consensus 174 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~---~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-~-~~~~~~li 247 (647)
...|..-+......++++.|+++.+++++.= + .--..+|.+++++-..-|.-+...++|++..+- | ...|..|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLL 1537 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 3456666777778888888888888877631 1 112357788888888888888888999887753 3 35688899
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHhcCCH
Q 006388 248 VGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGL-ISFITVSNALVTFYGKCGNI 326 (647)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~ 326 (647)
..|.+.+.+++|-++|+.|.+. +.-....|...+..+.+.++-+.|..++.++.+.-. ........-.+++-.++|+.
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 9999999999999999999875 344566788888888888888888888888877521 12455666777888899999
Q ss_pred HHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhcCCc
Q 006388 327 EDSHRLFNEMNV---RDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEV--TLIGVLSACSRAGL 391 (647)
Q Consensus 327 ~~A~~~~~~~~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~ 391 (647)
+.++.+|+.... +-...|+..|..-.++|+.+.+..+|++....++.|-.. .|.-.|..=...|+
T Consensus 1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 999999998772 356789999999999999999999999999988877643 44444443333343
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.28 E-value=9.3e-05 Score=67.50 Aligned_cols=153 Identities=13% Similarity=0.109 Sum_probs=84.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcC
Q 006388 347 LVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAG 426 (647)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 426 (647)
+-..+...|+-+....+..+.... ..-|............+.|++.+|...|++... .-++|...|+.+.-.|.+.|
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHcc
Confidence 334444555555555554443321 111222333355555566666666666665543 44555566666666666666
Q ss_pred CHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHH
Q 006388 427 RLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRR 502 (647)
Q Consensus 427 ~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 502 (647)
++++|..-|.+. .+.| ++...+.|...+.-.|+.+.|+.++.......+.++.+-..|+.+....|++++|..+-.
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 666666655554 3333 355556666666666666666666666665555566666666666666666666655543
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.28 E-value=0.0001 Score=79.98 Aligned_cols=161 Identities=14% Similarity=0.122 Sum_probs=125.1
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHH
Q 006388 340 DEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEV-TLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCM 418 (647)
Q Consensus 340 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 418 (647)
++..+-.|.....+.|.+++|..+++...+ +.|+.. ....+...+.+.+.+++|....+.... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 577888888999999999999999999988 578766 777788899999999999999998875 233356778888
Q ss_pred HHHHHHcCCHHHHHHHHHhCC-CCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhH
Q 006388 419 IDILSRAGRLEEAKSFINKMP-FPPD-AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDH 496 (647)
Q Consensus 419 i~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 496 (647)
..++...|++++|.++|++.- -.|+ ..+|.++..++...|+.++|...|+++++...+-...|..++ +++..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~~ 234 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDLNA 234 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHHHH
Confidence 899999999999999999882 3444 788999999999999999999999999887655445544332 33344
Q ss_pred HHHHHHHHHhCCCc
Q 006388 497 VSQLRRTMREKGVR 510 (647)
Q Consensus 497 a~~~~~~m~~~g~~ 510 (647)
-...++++.-.+..
T Consensus 235 ~~~~~~~~~~~~~~ 248 (694)
T PRK15179 235 DLAALRRLGVEGDG 248 (694)
T ss_pred HHHHHHHcCccccc
Confidence 44555555444433
No 126
>PLN02789 farnesyltranstransferase
Probab=98.26 E-value=0.00014 Score=71.40 Aligned_cols=139 Identities=9% Similarity=-0.027 Sum_probs=86.0
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCCCchhhHHHHHHH
Q 006388 8 SWNLLISGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRR-CVDLGRQIHGHILKFGFGSYVFVGSPLVDM 86 (647)
Q Consensus 8 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 86 (647)
+++.+-..+...+..++|+.++.++++.. |.+..+|+.--..+...| +++++...++.+++.. +.+..+++..-.+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 35566666777888888999988888775 556666766666666666 5788888888888765 4555566655555
Q ss_pred HHhcCCh--HHHHHHhccCCC---CCchHHHHHHHHHHhcCChHHHHHHhhcCCC---CCeehHHHHHHHH
Q 006388 87 YAKLGLI--YDAKRGFDELPE---KNIVMYNTMITGLLRRGLVEESRRLFRGMKD---KDSISWTTMITGL 149 (647)
Q Consensus 87 ~~~~g~~--~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 149 (647)
+.+.|.. +++...++.+.+ +|..+|+.....+.+.|+++++++.++++.+ .|..+|+.....+
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl 186 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVI 186 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHH
Confidence 5555542 455666655543 3444555555555555556666655555543 2334454444333
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.23 E-value=0.00019 Score=77.81 Aligned_cols=143 Identities=10% Similarity=0.100 Sum_probs=117.3
Q ss_pred CCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC--CC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHH
Q 006388 305 GLISFITVSNALVTFYGKCGNIEDSHRLFNEMN--VR-DEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEV-TLI 380 (647)
Q Consensus 305 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~ 380 (647)
....+...+..|.......|.+++|+.+++... .| +...+..+..++.+.+++++|+..+++.... .|+.. ...
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence 345668888889999999999999999999987 34 5677888899999999999999999999985 67766 455
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCChhhHHHHH
Q 006388 381 GVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM--PFPPDAIGWATLL 451 (647)
Q Consensus 381 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll 451 (647)
.+..++.+.|.+++|..+|+++.. ..+-+...+..+..++-+.|+.++|...|++. ...|....|+.++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 566788899999999999999986 33345788999999999999999999999988 2334455554444
No 128
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.19 E-value=2.7e-06 Score=53.11 Aligned_cols=35 Identities=31% Similarity=0.609 Sum_probs=32.4
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCCc
Q 006388 7 VSWNLLISGHASHGSVNDAVKVYNLMLKDGLGNLSR 42 (647)
Q Consensus 7 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 42 (647)
++||+||.+|++.|++++|.++|++|.+.|+ +||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~-~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGI-EPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCCC
Confidence 4899999999999999999999999999999 8873
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.19 E-value=0.00017 Score=71.47 Aligned_cols=115 Identities=19% Similarity=0.171 Sum_probs=68.0
Q ss_pred cCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCChhHHHH
Q 006388 388 RAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPPD-AIGWATLLSSCRIHGNVEIGKW 465 (647)
Q Consensus 388 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~ 465 (647)
..|.+++|+..++.+++ ..+.|+.......+.+.+.|+.++|.+.++++ ...|+ ...+-.+..++.+.|+..+|+.
T Consensus 318 ~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHH
Confidence 34566666666666554 23334444555556666666666666666665 34444 5555566666666666666666
Q ss_pred HHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHH
Q 006388 466 AAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTM 504 (647)
Q Consensus 466 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 504 (647)
.++.....+|+|+..|..|+.+|...|+..++...+.++
T Consensus 396 ~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 396 ILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 666666666666666666666666666665555555444
No 130
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.18 E-value=2.4e-05 Score=67.11 Aligned_cols=96 Identities=19% Similarity=0.257 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhh
Q 006388 412 HDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYA 489 (647)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 489 (647)
......+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++.+|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 455667777888889999999888887 3344 57788888888889999999999999999999999999999999999
Q ss_pred hCCChhHHHHHHHHHHhC
Q 006388 490 SKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 490 ~~g~~~~a~~~~~~m~~~ 507 (647)
..|++++|.+.+++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999887764
No 131
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.18 E-value=0.017 Score=61.95 Aligned_cols=68 Identities=22% Similarity=0.235 Sum_probs=54.5
Q ss_pred hHHHHHHHHHhcCCh---hHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhCCCccCC
Q 006388 446 GWATLLSSCRIHGNV---EIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREKGVRKDP 513 (647)
Q Consensus 446 ~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 513 (647)
+.+.|+..|++.++. -+|+-+++..+...|.|...-..|+.+|+-.|-...|.++++.+--+.|..|.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDT 508 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhcc
Confidence 346777788887764 46777788888888999888899999999999999999999988766666553
No 132
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=0.0015 Score=59.69 Aligned_cols=175 Identities=15% Similarity=0.102 Sum_probs=101.9
Q ss_pred HHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 006388 297 FHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDE 376 (647)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 376 (647)
+.+.+.......+......-...|.+.|++++|++.......-+....+ +..+.+..+.+-|.+.+++|.+- -+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded 169 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DED 169 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chH
Confidence 3344444433444344444456677888888888887773333333333 34455667778888888888763 355
Q ss_pred HHHHHHHHHHhc----CCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCChhhHHHH
Q 006388 377 VTLIGVLSACSR----AGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM--PFPPDAIGWATL 450 (647)
Q Consensus 377 ~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l 450 (647)
.|.+.|..++.+ .+.+.+|.-+|++|.. ..+|+..+.+-+..+....|++++|..+++.. ....++.+...+
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 577666666543 3456777777777754 35666666666666666677777777776665 222234444444
Q ss_pred HHHHHhcC-ChhHHHHHHHHHhccCCCCc
Q 006388 451 LSSCRIHG-NVEIGKWAAESLLELDPYNP 478 (647)
Q Consensus 451 l~~~~~~~-~~~~a~~~~~~~~~~~p~~~ 478 (647)
+-.-...| +.+...+...++....|..+
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 44443444 33444555566666666543
No 133
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.16 E-value=3.6e-06 Score=52.52 Aligned_cols=35 Identities=37% Similarity=0.676 Sum_probs=32.4
Q ss_pred ehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh
Q 006388 140 ISWTTMITGLMQNGLEREAIDLFREMRLEGLAMDQ 174 (647)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 174 (647)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 134
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.14 E-value=0.00026 Score=77.62 Aligned_cols=148 Identities=11% Similarity=0.075 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 006388 312 VSNALVTFYGKCGNIEDSHRLFNEMN---VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSR 388 (647)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 388 (647)
.+..|..+|-+.|+.++|..+++++. ..|+...|.+.-.|+.. +.++|++++.+.... +..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence 44455555666666666666665554 22455555555555555 555665555554432 333
Q ss_pred CCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 006388 389 AGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKMPFPPDAIGWATLLSSCRIHGNVEIGKWAAE 468 (647)
Q Consensus 389 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 468 (647)
..++..+.++|..+.. ..+.+...+-.+..... ...+...-+.++--+-.-|...++++++..+++
T Consensus 182 ~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~------------~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 182 KKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVL------------GHREFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred hhcchHHHHHHHHHHh--cCcccchHHHHHHHHHH------------hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 4455555555555543 11122222221111111 111122234455566677888899999999999
Q ss_pred HHhccCCCCchhHHHHHHhhh
Q 006388 469 SLLELDPYNPASYVLLSSIYA 489 (647)
Q Consensus 469 ~~~~~~p~~~~~~~~l~~~~~ 489 (647)
.+++.+|.|..+...++..|.
T Consensus 248 ~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 248 KILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHhcCCcchhhHHHHHHHHH
Confidence 999999999888888888876
No 135
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.08 E-value=5.4e-06 Score=51.33 Aligned_cols=34 Identities=21% Similarity=0.401 Sum_probs=30.7
Q ss_pred cccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC
Q 006388 6 GVSWNLLISGHASHGSVNDAVKVYNLMLKDGLGNL 40 (647)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 40 (647)
+++||++|.+|++.|+++.|+++|+.|.+.|+ +|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv-~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGV-KP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CC
Confidence 46899999999999999999999999999998 66
No 136
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.04 E-value=0.02 Score=57.82 Aligned_cols=427 Identities=11% Similarity=0.106 Sum_probs=240.2
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHhccCCC--C-CchHHHHHHHHHHhcCChHHHHHHhhcCCCC--CeehHHHHHHH
Q 006388 74 GSYVFVGSPLVDMYAKLGLIYDAKRGFDELPE--K-NIVMYNTMITGLLRRGLVEESRRLFRGMKDK--DSISWTTMITG 148 (647)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~ 148 (647)
+.|+..|+.||.-+... .++++++.++++.. | ....|..-|....+..+++..+++|.+...+ ++..|..-|.-
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~Y 95 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSY 95 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 67889999999877555 89999999999875 3 4467999999999999999999999887764 77778777764
Q ss_pred HHh-CCChhH----HHHHHHH-HHHCCCCCChh-hHHH---HHHHHhcCC------ChHHHHHHHHHHHHcCCCCchhHH
Q 006388 149 LMQ-NGLERE----AIDLFRE-MRLEGLAMDQF-TFGS---VLTACGGLL------ALEEGKQIHAFIIRNDHKDNVFVG 212 (647)
Q Consensus 149 ~~~-~g~~~~----A~~~~~~-m~~~g~~pd~~-t~~~---ll~~~~~~~------~~~~a~~~~~~~~~~g~~~~~~~~ 212 (647)
-.+ +|+... ..+.|+- |.+.|+.+-+. .|+. .+..--..| +++..++++..++..-+..=...|
T Consensus 96 VR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW 175 (656)
T KOG1914|consen 96 VRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLW 175 (656)
T ss_pred HHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHH
Confidence 433 233322 2223332 23445444332 2333 333322333 344455555555543322222333
Q ss_pred HHHHHHHH-------------hcCCHHHHHHHHhcCCC------CCh---------------hHHHHHHHHHHhcCCh--
Q 006388 213 SALVDMYC-------------KCKSIKYAESVFRTMAW------KNV---------------VSWTAMLVGYGQNGCS-- 256 (647)
Q Consensus 213 ~~li~~y~-------------~~g~~~~A~~~~~~~~~------~~~---------------~~~~~li~~~~~~g~~-- 256 (647)
+-....=- +...+..|++++++... ++. ..|-.+|.-=..++--
T Consensus 176 ~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~ 255 (656)
T KOG1914|consen 176 KDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTL 255 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccc
Confidence 32211100 01123334444443321 111 1133333322111110
Q ss_pred ------hHHHHHHHH-HHHCCCCCCHHH-HHHHHH----HHhccCCh-------HHHHHHHHHHHHhCCCcchhHHHHHH
Q 006388 257 ------EEAVKIFCN-MQRNGIEPDDFT-LGSVIS----SCANLASL-------EEGTQFHGRSLVTGLISFITVSNALV 317 (647)
Q Consensus 257 ------~~A~~~~~~-m~~~g~~p~~~t-~~~ll~----a~~~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li 317 (647)
....-.+++ |.-.+..|+..- +...+. .+...|+. +++..+++..+..-...+..+|.++.
T Consensus 256 ~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a 335 (656)
T KOG1914|consen 256 DGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALA 335 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001111111 111223333211 111111 12222332 34444555444433333444444443
Q ss_pred HHHHhcCC---HHHHHHHHhhcC----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcC
Q 006388 318 TFYGKCGN---IEDSHRLFNEMN----VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKP-DEVTLIGVLSACSRA 389 (647)
Q Consensus 318 ~~~~~~g~---~~~A~~~~~~~~----~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~ 389 (647)
+.--..-+ .+.....+++.. ..-..+|-..+..-.+..-.+.|..+|.+..+.+..+ +....++++..++ +
T Consensus 336 ~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-s 414 (656)
T KOG1914|consen 336 DYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-S 414 (656)
T ss_pred hhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-c
Confidence 32211111 333444444443 2234467777777777777899999999999998888 4446666666554 5
Q ss_pred CcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCC--hhhHHHHHHHHHhcCChhHHH
Q 006388 390 GLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM---PFPPD--AIGWATLLSSCRIHGNVEIGK 464 (647)
Q Consensus 390 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~~~~~~a~ 464 (647)
++.+-|.++|+.=.+.+|- ++.--...++-+...|+-..|..+|++. ...|+ ...|..++.--..-|++..+.
T Consensus 415 kD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~ 492 (656)
T KOG1914|consen 415 KDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSIL 492 (656)
T ss_pred CChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHH
Confidence 7889999999988876554 3445567888899999999999999988 23444 679999999999999999999
Q ss_pred HHHHHHhccCCCC----chhHHHHHHhhhhCCChhHHHHHHHHH
Q 006388 465 WAAESLLELDPYN----PASYVLLSSIYASKGKWDHVSQLRRTM 504 (647)
Q Consensus 465 ~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m 504 (647)
++-++....-|.+ ...-..+.+-|.-.+.+..-..-++.|
T Consensus 493 ~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 493 KLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 9988877655521 123344556666666655444444444
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.04 E-value=8.4e-05 Score=74.46 Aligned_cols=122 Identities=14% Similarity=0.092 Sum_probs=92.7
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHh
Q 006388 379 LIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRI 456 (647)
Q Consensus 379 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 456 (647)
..+++..+...++++.|..+|+++.+. .|+ ....++..+...++-.+|.+++.+. ...| +...+..-...|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 344556666677788888888877654 244 3445677777777777888877776 2233 56666666667888
Q ss_pred cCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHH
Q 006388 457 HGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMR 505 (647)
Q Consensus 457 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 505 (647)
.++++.|..+++++.+..|.+..+|..|+.+|...|++++|...++.+-
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8999999999999999999999999999999999999999998888764
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.03 E-value=0.00022 Score=71.47 Aligned_cols=127 Identities=17% Similarity=0.207 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcC
Q 006388 311 TVSNALVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKP-DEVTLIGVLSACSRA 389 (647)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~ 389 (647)
....+|+..+...++++.|..+|+++...++..+-.++..+...++-.+|++++++.... .| +...+..-...|...
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Confidence 344566777778889999999999999888777778888888888999999999998865 34 444555556678889
Q ss_pred CcHHHHHHHHHHHHHhcCCCcC-hHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 006388 390 GLVEKGRHYFEIMVKEYGIRPI-HDHYTCMIDILSRAGRLEEAKSFINKMPFPP 442 (647)
Q Consensus 390 g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 442 (647)
++++.|+.+.+.+.+ ..|+ ..+|..|+..|...|++++|+..++.+|..|
T Consensus 248 ~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 248 KKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 999999999998874 3554 5799999999999999999999999997544
No 139
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.02 E-value=0.001 Score=66.24 Aligned_cols=140 Identities=16% Similarity=0.202 Sum_probs=113.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhcCCcHHHHHHHHHHHHHhcCCCcC-hHHHHHHHHHHHH
Q 006388 347 LVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGV-LSACSRAGLVEKGRHYFEIMVKEYGIRPI-HDHYTCMIDILSR 424 (647)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~ 424 (647)
..-.+...|++++|+..++.+... .||...|..+ ...+...++.++|.+.++.+.. ..|+ ....-.+.++|.+
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~ 386 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHh
Confidence 334456689999999999998875 6776655554 4678899999999999999985 3565 4566678899999
Q ss_pred cCCHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHH
Q 006388 425 AGRLEEAKSFINKM--PFPPDAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRR 502 (647)
Q Consensus 425 ~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 502 (647)
.|++.+|..+++.. ..+.|+..|..|..+|...|+..++... .+..|...|+|++|.....
T Consensus 387 ~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~~l~ 449 (484)
T COG4783 387 GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAIIFLM 449 (484)
T ss_pred cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHHHHH
Confidence 99999999999887 3344689999999999999998777655 4566888999999999999
Q ss_pred HHHhCC
Q 006388 503 TMREKG 508 (647)
Q Consensus 503 ~m~~~g 508 (647)
...++.
T Consensus 450 ~A~~~~ 455 (484)
T COG4783 450 RASQQV 455 (484)
T ss_pred HHHHhc
Confidence 888654
No 140
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.01 E-value=1e-05 Score=50.08 Aligned_cols=34 Identities=21% Similarity=0.414 Sum_probs=30.4
Q ss_pred eehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 006388 139 SISWTTMITGLMQNGLEREAIDLFREMRLEGLAM 172 (647)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 172 (647)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3589999999999999999999999999999887
No 141
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.95 E-value=1.1e-05 Score=48.60 Aligned_cols=31 Identities=35% Similarity=0.654 Sum_probs=28.6
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHHCCC
Q 006388 7 VSWNLLISGHASHGSVNDAVKVYNLMLKDGL 37 (647)
Q Consensus 7 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 37 (647)
++||+||++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5899999999999999999999999998874
No 142
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.94 E-value=0.0087 Score=66.05 Aligned_cols=82 Identities=12% Similarity=0.136 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcC
Q 006388 276 FTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFG 355 (647)
Q Consensus 276 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g 355 (647)
..+..+..+|.+.|+.+++..+++++++.. +.++.+.|.+...|+.. ++++|.+++.+. +..|...+
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~k 183 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKK 183 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhh
Confidence 345555566666666666666666666665 55666666666666666 777776665543 23355566
Q ss_pred ChHHHHHHHHHHHHC
Q 006388 356 KANETIDLFEKMLSH 370 (647)
Q Consensus 356 ~~~~A~~~~~~m~~~ 370 (647)
++.++.++|.++...
T Consensus 184 q~~~~~e~W~k~~~~ 198 (906)
T PRK14720 184 QYVGIEEIWSKLVHY 198 (906)
T ss_pred cchHHHHHHHHHHhc
Confidence 666777777766663
No 143
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.94 E-value=0.00026 Score=60.54 Aligned_cols=113 Identities=13% Similarity=0.113 Sum_probs=85.6
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 006388 363 LFEKMLSHGLKPDE-VTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PF 440 (647)
Q Consensus 363 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 440 (647)
+|++... ..|+. .....+...+...|++++|.+.|+.+... .+.+...+..+...|.+.|++++|..++++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455554 34544 34555666777888999999998888653 2446678888888898999999999988877 34
Q ss_pred CC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCch
Q 006388 441 PP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPA 479 (647)
Q Consensus 441 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 479 (647)
.| +...+..+...+...|+.+.|...++++++.+|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 44 4677888888889999999999999999999997654
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.92 E-value=0.00039 Score=60.25 Aligned_cols=114 Identities=19% Similarity=0.237 Sum_probs=59.8
Q ss_pred CCcHHHHHHHHHHHHHhcCCCc-ChHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC----hhhHHHHHHHHHhcCChhH
Q 006388 389 AGLVEKGRHYFEIMVKEYGIRP-IHDHYTCMIDILSRAGRLEEAKSFINKMP-FPPD----AIGWATLLSSCRIHGNVEI 462 (647)
Q Consensus 389 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~ll~~~~~~~~~~~ 462 (647)
.++...+...++.+.+.++-.| .....-.+...+...|++++|...|+... ..|| ......|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555555555432221 11222334455556666666666665551 1122 2233445555566666666
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHH
Q 006388 463 GKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRT 503 (647)
Q Consensus 463 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 503 (647)
|...++.. ...+..+..+..++++|.+.|++++|...|++
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666442 22223445566677777777777777776654
No 145
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.86 E-value=0.034 Score=54.65 Aligned_cols=121 Identities=17% Similarity=0.218 Sum_probs=84.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHH
Q 006388 314 NALVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVE 393 (647)
Q Consensus 314 ~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 393 (647)
+.-+.-+...|+...|.++-.+..-||..-|...+.+|+..+++++-..+... +-.++-|..++.+|...|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 33455556678888888888888888888888888888888888876665432 223467778888888888888
Q ss_pred HHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 006388 394 KGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKMPFPPDAIGWATLLSSC 454 (647)
Q Consensus 394 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~ 454 (647)
+|..+...+ .+..-+.+|.++|++.+|.+.--+.+ |...+..+...|
T Consensus 255 eA~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~ 301 (319)
T PF04840_consen 255 EASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRC 301 (319)
T ss_pred HHHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHC
Confidence 888776642 12456778888888888877765543 444444444333
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.80 E-value=0.0002 Score=56.40 Aligned_cols=92 Identities=25% Similarity=0.309 Sum_probs=73.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCC
Q 006388 415 YTCMIDILSRAGRLEEAKSFINKM-PFPPD-AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKG 492 (647)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 492 (647)
+..+...+...|++++|..++++. ...|+ ...|..+...+...++++.|...+++..+..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666777788888888888776 33343 4667777888888888999999999988888888888888889999999
Q ss_pred ChhHHHHHHHHHHh
Q 006388 493 KWDHVSQLRRTMRE 506 (647)
Q Consensus 493 ~~~~a~~~~~~m~~ 506 (647)
++++|...+++..+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999888887654
No 147
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=0.0018 Score=58.87 Aligned_cols=182 Identities=16% Similarity=0.222 Sum_probs=137.5
Q ss_pred cCCHHHHHHHHhhcCC--------CCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhcCCcH
Q 006388 323 CGNIEDSHRLFNEMNV--------RDE-VSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGV-LSACSRAGLV 392 (647)
Q Consensus 323 ~g~~~~A~~~~~~~~~--------~d~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~ 392 (647)
..+.++..+++.++.. ++. ..|..++-+....|+.+.|...++++... + |.+.-...+ ..-+-..|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 4678888888887751 122 24555566667789999999999999876 3 554422222 1224456899
Q ss_pred HHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 006388 393 EKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM--PFPPDAIGWATLLSSCRIHGNVEIGKWAAESL 470 (647)
Q Consensus 393 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 470 (647)
++|.++++.+..+ -+-|..+|.--+-+.-..|+--+|++-+... .+..|...|.-|...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999875 2445677776677777788877888776665 45678999999999999999999999999999
Q ss_pred hccCCCCchhHHHHHHhhhhCC---ChhHHHHHHHHHHhCC
Q 006388 471 LELDPYNPASYVLLSSIYASKG---KWDHVSQLRRTMREKG 508 (647)
Q Consensus 471 ~~~~p~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~g 508 (647)
+=..|-++..+..++..+...| +++-+.+++.+..+..
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999987766 4666777777776643
No 148
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.77 E-value=2.5e-05 Score=60.37 Aligned_cols=77 Identities=23% Similarity=0.309 Sum_probs=42.8
Q ss_pred CCHHHHHHHHHhC-CCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHH
Q 006388 426 GRLEEAKSFINKM-PFPP---DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLR 501 (647)
Q Consensus 426 g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 501 (647)
|++++|+.+++++ ...| +...|..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|.+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4555555555554 1112 334444455666666666666666666 5555555555556677777777777777766
Q ss_pred HH
Q 006388 502 RT 503 (647)
Q Consensus 502 ~~ 503 (647)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 149
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.014 Score=53.71 Aligned_cols=141 Identities=13% Similarity=0.135 Sum_probs=88.2
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-ChhhHHHHHHHHHH----cCC
Q 006388 282 ISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVR-DEVSWTALVSGYAK----FGK 356 (647)
Q Consensus 282 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-d~~~~~~li~~~~~----~g~ 356 (647)
...|.+.++++.|........ +....-.=+..+.+..+++-|.+.++.|.+- +-.+.+.|..++.+ .+.
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchh
Confidence 344555566666655544311 1111112234455666777777777777754 33455555555543 345
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHH
Q 006388 357 ANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEA 431 (647)
Q Consensus 357 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 431 (647)
..+|.-+|++|-+. ..|+..+.+....++...|++++|..+++....+. ..++++...++-.-...|...++
T Consensus 189 ~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--~~dpetL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 189 IQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--AKDPETLANLIVLALHLGKDAEV 260 (299)
T ss_pred hhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCChHH
Confidence 78888888888764 67888888888888888899999998888887642 33455665555555556654443
No 150
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.0038 Score=56.81 Aligned_cols=194 Identities=17% Similarity=0.156 Sum_probs=142.5
Q ss_pred ccCChHHHHHHHHHHHH---hC-CCcchh-HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHH---HHHHHcCChH
Q 006388 287 NLASLEEGTQFHGRSLV---TG-LISFIT-VSNALVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALV---SGYAKFGKAN 358 (647)
Q Consensus 287 ~~~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li---~~~~~~g~~~ 358 (647)
...+.++..+++..++. .| ..++.. ++.-+.-+...+|+.+.|...++.+..+=+.++.... .-+-..|+++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchh
Confidence 34567888888877754 34 455543 4556666777889999999999987643233332221 2245579999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006388 359 ETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM 438 (647)
Q Consensus 359 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 438 (647)
+|+++++..++.. +.|.+++..=+...-..|..-+|++-+....+ .+..|.+.|.-+.+.|...|++++|.-.++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999875 44566777666666677877899988888877 56779999999999999999999999999998
Q ss_pred -CCCC-ChhhHHHHHHHHHhc---CChhHHHHHHHHHhccCCCCchhHHH
Q 006388 439 -PFPP-DAIGWATLLSSCRIH---GNVEIGKWAAESLLELDPYNPASYVL 483 (647)
Q Consensus 439 -~~~p-~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~p~~~~~~~~ 483 (647)
-..| ++..+..+...+... .+.+.+.+.+++++++.|.+...+..
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~G 230 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFG 230 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHH
Confidence 3455 455666666665443 37888999999999999965444433
No 151
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.75 E-value=3.8e-05 Score=46.22 Aligned_cols=31 Identities=32% Similarity=0.700 Sum_probs=25.5
Q ss_pred ehHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 006388 140 ISWTTMITGLMQNGLEREAIDLFREMRLEGL 170 (647)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 170 (647)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
No 152
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.74 E-value=6.9e-05 Score=55.38 Aligned_cols=64 Identities=23% Similarity=0.272 Sum_probs=59.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCC-ChhHHHHHHHHHHh
Q 006388 443 DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKG-KWDHVSQLRRTMRE 506 (647)
Q Consensus 443 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 506 (647)
++.+|..+...+...|++++|+..++++++.+|+++..+..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999 79999999988765
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.74 E-value=0.00061 Score=56.65 Aligned_cols=98 Identities=15% Similarity=0.106 Sum_probs=47.6
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHhcCCCc-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----hhhHHHHHHHHH
Q 006388 382 VLSACSRAGLVEKGRHYFEIMVKEYGIRP-IHDHYTCMIDILSRAGRLEEAKSFINKM-PFPPD----AIGWATLLSSCR 455 (647)
Q Consensus 382 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~ 455 (647)
+...+...|++++|...|+.+.+.+.-.| ....+..+...+.+.|++++|.+.++.+ ...|+ ..++..+...+.
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ 87 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH
Confidence 33344445555555555555543321111 1233444555555555555555555544 11122 334555555555
Q ss_pred hcCChhHHHHHHHHHhccCCCCch
Q 006388 456 IHGNVEIGKWAAESLLELDPYNPA 479 (647)
Q Consensus 456 ~~~~~~~a~~~~~~~~~~~p~~~~ 479 (647)
..|+.++|...++++++..|+++.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 88 ELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HhCChHHHHHHHHHHHHHCcCChh
Confidence 566666666666666666665443
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.70 E-value=0.00042 Score=57.61 Aligned_cols=96 Identities=13% Similarity=0.084 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---chhHHHH
Q 006388 413 DHYTCMIDILSRAGRLEEAKSFINKM-PFPPD----AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYN---PASYVLL 484 (647)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l 484 (647)
..+-.++..+.+.|++++|.+.++++ ...|+ ...+..+...+...|+++.|...++.+....|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 35667788889999999999999888 22333 3466778889999999999999999999988875 5678899
Q ss_pred HHhhhhCCChhHHHHHHHHHHhCC
Q 006388 485 SSIYASKGKWDHVSQLRRTMREKG 508 (647)
Q Consensus 485 ~~~~~~~g~~~~a~~~~~~m~~~g 508 (647)
+.+|.+.|++++|.+.++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999998764
No 155
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.70 E-value=0.0023 Score=55.34 Aligned_cols=123 Identities=14% Similarity=0.161 Sum_probs=78.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcCh--HHHHH
Q 006388 344 WTALVSGYAKFGKANETIDLFEKMLSHGLKPDE----VTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIH--DHYTC 417 (647)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~ 417 (647)
|..++..+ ..++...+...++.+.... |+. .....+...+...|++++|...|+..... ...|.. ...-.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 33444444 3677777777777777652 332 12333445667778888888888887764 222221 23344
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 006388 418 MIDILSRAGRLEEAKSFINKMPFP-PDAIGWATLLSSCRIHGNVEIGKWAAESL 470 (647)
Q Consensus 418 li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 470 (647)
|...+...|++++|+..++..+.. .....+..+...+...|+.++|+..|+++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 667777888888888888776322 23556667777788888888888888765
No 156
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.66 E-value=0.00053 Score=69.10 Aligned_cols=97 Identities=15% Similarity=0.052 Sum_probs=52.0
Q ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhH
Q 006388 385 ACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEI 462 (647)
Q Consensus 385 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~ 462 (647)
.+...|++++|+..|+.+++. -+.+...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 344455666666666655542 1223445555555555666666666555555 3333 24455555555555666666
Q ss_pred HHHHHHHHhccCCCCchhHHH
Q 006388 463 GKWAAESLLELDPYNPASYVL 483 (647)
Q Consensus 463 a~~~~~~~~~~~p~~~~~~~~ 483 (647)
|+..++++++++|+++.....
T Consensus 89 A~~~~~~al~l~P~~~~~~~~ 109 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHH
Confidence 666666666666655544433
No 157
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.62 E-value=0.0015 Score=58.49 Aligned_cols=131 Identities=13% Similarity=0.142 Sum_probs=81.4
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHH
Q 006388 340 DEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPD--EVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTC 417 (647)
Q Consensus 340 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 417 (647)
....+..+...+...|++++|+..|++.......|+ ...+..+...+.+.|++++|...++...+. .+.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 344566667777778888888888887776433332 245666667777778888888877777643 1223455566
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCC
Q 006388 418 MIDILSRAGRLEEAKSFINKMPFPPDAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGK 493 (647)
Q Consensus 418 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 493 (647)
+..+|...|+...+..-++.. ...+++|...++++.+.+|++ |..+...+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 666666666655544332221 112577888888888888865 5455555554443
No 158
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.62 E-value=0.00046 Score=64.35 Aligned_cols=99 Identities=18% Similarity=0.140 Sum_probs=69.5
Q ss_pred HhcCCcHHHHHHHHHHHHHhcCCCc-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCChhH
Q 006388 386 CSRAGLVEKGRHYFEIMVKEYGIRP-IHDHYTCMIDILSRAGRLEEAKSFINKM-PFPPD-AIGWATLLSSCRIHGNVEI 462 (647)
Q Consensus 386 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~ 462 (647)
..+.+++.+|+..|...++ +.| |...|..-..+|.+.|.++.|.+-.+.. .+.|. ..+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 4455677777777776663 344 4455566667777777777777776665 55665 6678888888888888888
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHh
Q 006388 463 GKWAAESLLELDPYNPASYVLLSSI 487 (647)
Q Consensus 463 a~~~~~~~~~~~p~~~~~~~~l~~~ 487 (647)
|++.|+++++++|+|......|-.+
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHH
Confidence 8888888888888887555554433
No 159
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.61 E-value=0.00016 Score=52.62 Aligned_cols=57 Identities=26% Similarity=0.356 Sum_probs=46.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 450 LLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 450 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
+...+...|++++|+..++++++..|+++..+..++.++...|++++|..+++++.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455677888888888888888888888888888888888888888888888888765
No 160
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.60 E-value=0.0026 Score=67.08 Aligned_cols=38 Identities=24% Similarity=0.352 Sum_probs=26.0
Q ss_pred CCChhhHHHHHHHHHHc--C---ChHHHHHHHHHHHHCCCCCCHH
Q 006388 338 VRDEVSWTALVSGYAKF--G---KANETIDLFEKMLSHGLKPDEV 377 (647)
Q Consensus 338 ~~d~~~~~~li~~~~~~--g---~~~~A~~~~~~m~~~g~~p~~~ 377 (647)
..|...|...+.+.... + +...|..+|++..+. .|+..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a 376 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFT 376 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcH
Confidence 45777888888775432 2 266888888888874 67753
No 161
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.60 E-value=0.047 Score=52.99 Aligned_cols=242 Identities=20% Similarity=0.214 Sum_probs=155.9
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHH
Q 006388 252 QNGCSEEAVKIFCNMQRNGIEPDDF--TLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDS 329 (647)
Q Consensus 252 ~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 329 (647)
-.|+++.|.+-|+.|... |... .+..+.-...+.|+.+.|.++-+..-..- +.-.....+.+...+..|+++.|
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHH
Confidence 356777777777776642 2221 22333333456677777777766655442 22345667788888888888888
Q ss_pred HHHHhhcC-----CCChh--hHHHHHHHHH---HcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCCcHHHHHHH
Q 006388 330 HRLFNEMN-----VRDEV--SWTALVSGYA---KFGKANETIDLFEKMLSHGLKPDEV-TLIGVLSACSRAGLVEKGRHY 398 (647)
Q Consensus 330 ~~~~~~~~-----~~d~~--~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~ 398 (647)
+++.+.-. ++|+. .--.|+.+-+ -..+...|...-.+..+ +.||.+ .-.....++.+.|++.++-.+
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhH
Confidence 88887654 33332 1222332221 13345566665555544 577765 333445788999999999999
Q ss_pred HHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 006388 399 FEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM----PFPPD-AIGWATLLSSCRIHGNVEIGKWAAESLLEL 473 (647)
Q Consensus 399 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 473 (647)
++.+-+. .|.+..+... .+.|.|+. ++.-+++. .++|+ ..+..++..+-...|++..|..-.+.+...
T Consensus 286 lE~aWK~---ePHP~ia~lY--~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 286 LETAWKA---EPHPDIALLY--VRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred HHHHHhc---CCChHHHHHH--HHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 9988754 5666555433 34566653 22222222 24454 667777888888999999999999999999
Q ss_pred CCCCchhHHHHHHhhhhC-CChhHHHHHHHHHHhC
Q 006388 474 DPYNPASYVLLSSIYASK-GKWDHVSQLRRTMREK 507 (647)
Q Consensus 474 ~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 507 (647)
.| ....|..|+++-... |+-.++...+-+..+.
T Consensus 359 ~p-res~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 359 AP-RESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred Cc-hhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 99 457888899887655 9998888887776554
No 162
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.0016 Score=63.23 Aligned_cols=154 Identities=11% Similarity=0.049 Sum_probs=112.1
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHhcCCcHHHHHHHHHHHHHhcCCCcChHH------------
Q 006388 349 SGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLS--ACSRAGLVEKGRHYFEIMVKEYGIRPIHDH------------ 414 (647)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~------------ 414 (647)
.++...|++++|...--..++. .++. .+..+++ ++-..++.+.|...|++.+ .+.|+...
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHH
Confidence 3566788888888877666553 2221 2222232 3445678888888888765 34554322
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-----ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHh
Q 006388 415 -YTCMIDILSRAGRLEEAKSFINKM-PFPP-----DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSI 487 (647)
Q Consensus 415 -~~~li~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 487 (647)
+..=.+-..+.|++.+|.+.+.+. .+.| ++..|.....+..+.|+.++|+.-.+++++++|.-...|..-+++
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 122234456889999999999887 4444 455666666777889999999999999999999988999999999
Q ss_pred hhhCCChhHHHHHHHHHHhCC
Q 006388 488 YASKGKWDHVSQLRRTMREKG 508 (647)
Q Consensus 488 ~~~~g~~~~a~~~~~~m~~~g 508 (647)
+...++|++|.+-+++..+.-
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999887643
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.57 E-value=0.00076 Score=60.39 Aligned_cols=81 Identities=17% Similarity=0.116 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHh
Q 006388 413 DHYTCMIDILSRAGRLEEAKSFINKM-PFPPD----AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSI 487 (647)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 487 (647)
..+..+...+...|++++|...|++. ...|+ ...|..+...+...|++++|...++++++..|.++..+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 45666677777778888888877766 22222 45777888888888999999999999998888888888888888
Q ss_pred hhhCCC
Q 006388 488 YASKGK 493 (647)
Q Consensus 488 ~~~~g~ 493 (647)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 887776
No 164
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.56 E-value=0.00022 Score=66.42 Aligned_cols=87 Identities=21% Similarity=0.264 Sum_probs=78.9
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHH
Q 006388 420 DILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHV 497 (647)
Q Consensus 420 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 497 (647)
+-+.+.+++++|+..|.++ .+.| |++.|..-..+|.+.|.++.|++-.+.++.++|....+|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4466889999999999988 6666 5888888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 006388 498 SQLRRTMRE 506 (647)
Q Consensus 498 ~~~~~~m~~ 506 (647)
.+.|++..+
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 999987655
No 165
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.54 E-value=0.00074 Score=60.23 Aligned_cols=94 Identities=13% Similarity=-0.024 Sum_probs=75.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHH
Q 006388 411 IHDHYTCMIDILSRAGRLEEAKSFINKM-PFPPD----AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLS 485 (647)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 485 (647)
....|..++..+...|++++|...|++. ...|+ ..+|..+...+...|++++|+..+++++++.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3456677777788889999999988877 22232 357888999999999999999999999999999888888888
Q ss_pred Hhhh-------hCCChhHHHHHHHHH
Q 006388 486 SIYA-------SKGKWDHVSQLRRTM 504 (647)
Q Consensus 486 ~~~~-------~~g~~~~a~~~~~~m 504 (647)
.+|. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 888888777666654
No 166
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.52 E-value=0.12 Score=51.35 Aligned_cols=418 Identities=13% Similarity=0.075 Sum_probs=214.1
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCCcch------HHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHHHHH--HH
Q 006388 16 HASHGSVNDAVKVYNLMLKDGLGNLSRIT------FSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSPLVD--MY 87 (647)
Q Consensus 16 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~------~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~--~~ 87 (647)
+.+.++..+|.++|.+.-+.. ..+.+. -+.+++++.. .+++........+.+.- +... |-.|.. ..
T Consensus 16 Lqkq~~~~esEkifskI~~e~--~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~-~~s~--~l~LF~~L~~ 89 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK--ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF-GKSA--YLPLFKALVA 89 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc-CCch--HHHHHHHHHH
Confidence 356789999999999987654 333232 3456666653 45666666666665542 2222 333333 23
Q ss_pred HhcCChHHHHHHhccCCC------------------CCchHHHHHHHHHHhcCChHHHHHHhhcCCCC--------Ceeh
Q 006388 88 AKLGLIYDAKRGFDELPE------------------KNIVMYNTMITGLLRRGLVEESRRLFRGMKDK--------DSIS 141 (647)
Q Consensus 88 ~~~g~~~~A~~~~~~~~~------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~ 141 (647)
-+.++++.|.+.|..-.+ +|.+.=+..+..+...|++.+++.++++|..+ |+.+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 477889999887754432 12233455677888999999999999887642 7778
Q ss_pred HHHHHHHHHhC--------C-------ChhHHHHHHHHHHHC------CCCCChhhHHHHHHHHhcC--CChHHHHHHHH
Q 006388 142 WTTMITGLMQN--------G-------LEREAIDLFREMRLE------GLAMDQFTFGSVLTACGGL--LALEEGKQIHA 198 (647)
Q Consensus 142 ~~~li~~~~~~--------g-------~~~~A~~~~~~m~~~------g~~pd~~t~~~ll~~~~~~--~~~~~a~~~~~ 198 (647)
||.++-.+.++ . .++-++-...+|... .+.|...-+..++....-. ..+.--.+++.
T Consensus 170 yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 170 YDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILE 249 (549)
T ss_pred HHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence 88755544432 1 123333333333321 2334444444444333221 22333344454
Q ss_pred HHHHcCCCCch-hHHHHHHHHHHhcCCHHHHHHHHhcCC--------CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006388 199 FIIRNDHKDNV-FVGSALVDMYCKCKSIKYAESVFRTMA--------WKNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRN 269 (647)
Q Consensus 199 ~~~~~g~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 269 (647)
.....-+.|+- .+...|+.-+.+ +.+++..+-+.+. ++=+.++..++....+.++..+|-+.+.-+...
T Consensus 250 ~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 250 NWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 44444444543 233445555554 3444444333322 223457888888888899988888887766543
Q ss_pred CCCCCHHHHHHH-------HHHHh-cc---CChHHHHHHHHHHHHhCCCcchhHHHHH---HHHHHhcCC-HHHHHHHHh
Q 006388 270 GIEPDDFTLGSV-------ISSCA-NL---ASLEEGTQFHGRSLVTGLISFITVSNAL---VTFYGKCGN-IEDSHRLFN 334 (647)
Q Consensus 270 g~~p~~~t~~~l-------l~a~~-~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~g~-~~~A~~~~~ 334 (647)
.|+...-.-+ -+..+ .- .++..-..++..+...++....-+ .-| ..-+-+.|. -++|.++++
T Consensus 328 --dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLv-h~L~~~Ak~lW~~g~~dekalnLLk 404 (549)
T PF07079_consen 328 --DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLV-HYLVFGAKHLWEIGQCDEKALNLLK 404 (549)
T ss_pred --CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHH-HHHHHHHHHHHhcCCccHHHHHHHH
Confidence 4443211111 11111 11 111122223333333332221111 111 112233343 566677666
Q ss_pred hcC---CCChhhHHHHH----HHHHHc---CChHHHHHHHHHHHHCCCCCCHH----HHHHHHHH--HhcCCcHHHHHHH
Q 006388 335 EMN---VRDEVSWTALV----SGYAKF---GKANETIDLFEKMLSHGLKPDEV----TLIGVLSA--CSRAGLVEKGRHY 398 (647)
Q Consensus 335 ~~~---~~d~~~~~~li----~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a--~~~~g~~~~a~~~ 398 (647)
.+. ..|...-|.+. ..|.+. ....+-+.+-+-..+.|+.|-.+ .-+.+.+| +...|++.++.-+
T Consensus 405 ~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~y 484 (549)
T PF07079_consen 405 LILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLY 484 (549)
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 654 23444333322 122221 12233333333344556665433 22222222 3345677766554
Q ss_pred HHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhhHHH
Q 006388 399 FEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKMPFPPDAIGWAT 449 (647)
Q Consensus 399 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 449 (647)
-.-+. .+.|++.+|..+.-.+....+++||.+++...| |+..+|++
T Consensus 485 s~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 485 SSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 33332 567777777777777777777777777777775 45555543
No 167
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.51 E-value=0.0014 Score=66.18 Aligned_cols=104 Identities=12% Similarity=0.114 Sum_probs=81.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHc
Q 006388 347 LVSGYAKFGKANETIDLFEKMLSHGLKPD-EVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRA 425 (647)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 425 (647)
-...+...|++++|+++|++.++. .|+ ...+..+..++...|++++|+..++.++.. -+.+...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHh
Confidence 345667889999999999999985 444 557778888999999999999999999853 233567888999999999
Q ss_pred CCHHHHHHHHHhC-CCCCChhhHHHHHHHH
Q 006388 426 GRLEEAKSFINKM-PFPPDAIGWATLLSSC 454 (647)
Q Consensus 426 g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~ 454 (647)
|++++|...|++. ...|+......++..|
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999987 5566644444444333
No 168
>PRK15331 chaperone protein SicA; Provisional
Probab=97.44 E-value=0.0035 Score=53.73 Aligned_cols=89 Identities=13% Similarity=0.051 Sum_probs=77.2
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChh
Q 006388 418 MIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWD 495 (647)
Q Consensus 418 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 495 (647)
...-+...|++++|..+|.-+ -..| +...|..|...|...++++.|...|..+..++++||.++...+..|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 344456899999999999876 2222 56678899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 006388 496 HVSQLRRTMRE 506 (647)
Q Consensus 496 ~a~~~~~~m~~ 506 (647)
.|...|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998766
No 169
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.44 E-value=0.039 Score=56.87 Aligned_cols=235 Identities=14% Similarity=0.168 Sum_probs=125.7
Q ss_pred ehHHHHHHHHHhCCChhHHHHHHHHHHHCCCC-----------CChhhHHHHHHHHhcCCChHHHHH--HHHHHHHcCCC
Q 006388 140 ISWTTMITGLMQNGLEREAIDLFREMRLEGLA-----------MDQFTFGSVLTACGGLLALEEGKQ--IHAFIIRNDHK 206 (647)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----------pd~~t~~~ll~~~~~~~~~~~a~~--~~~~~~~~g~~ 206 (647)
+.+.+=+.-|...|.+++|.++-. .|+. .+...++..=++|.+..+..--+- -++.+.++|-.
T Consensus 557 vp~~~~m~q~Ieag~f~ea~~iac----lgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~ 632 (1081)
T KOG1538|consen 557 VPQSAPMYQYIERGLFKEAYQIAC----LGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGET 632 (1081)
T ss_pred ccccccchhhhhccchhhhhcccc----cceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Confidence 345555566777777777655421 1111 122233444445555544433222 23456667766
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 006388 207 DNVFVGSALVDMYCKCKSIKYAESVFRTMAWKNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCA 286 (647)
Q Consensus 207 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 286 (647)
|+... +...++-.|++.+|-++|.+ +|....|+++|..|+-- -...-+.
T Consensus 633 P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMF----------D~aQE~~ 681 (1081)
T KOG1538|consen 633 PNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMF----------DYAQEFL 681 (1081)
T ss_pred chHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHH----------HHHHHHh
Confidence 76644 44556667888888887754 56667777777766531 1122233
Q ss_pred ccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHH
Q 006388 287 NLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFGKANETIDLFEK 366 (647)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~ 366 (647)
..|..++-+.+.+.-.+. ..+..--.+...++...|+.++|..+. ..+|-.+-+.++-++
T Consensus 682 ~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rk 741 (1081)
T KOG1538|consen 682 GSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARK 741 (1081)
T ss_pred hcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhh
Confidence 344444443333222111 011111124455666677777775542 334555555555444
Q ss_pred HHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC
Q 006388 367 MLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKMP-FPPD 443 (647)
Q Consensus 367 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~ 443 (647)
+-. .+..+...+...+.+...+.-|-++|..|-. ...++++....|++.+|..+-++.| ..||
T Consensus 742 ld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~d 805 (1081)
T KOG1538|consen 742 LDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDD 805 (1081)
T ss_pred cch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcccccc
Confidence 432 2333455555555566667777777777632 2356777778888888888888875 4444
No 170
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.43 E-value=0.00047 Score=50.09 Aligned_cols=61 Identities=28% Similarity=0.331 Sum_probs=49.3
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 006388 418 MIDILSRAGRLEEAKSFINKM-PFPPD-AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNP 478 (647)
Q Consensus 418 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 478 (647)
+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456678889999999998887 44564 77888888999999999999999999999999764
No 171
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.23 Score=52.51 Aligned_cols=335 Identities=13% Similarity=0.079 Sum_probs=177.4
Q ss_pred hCCCCchhhHH-----HHHHHHHhcCChHHHHHHhccCCCCC---chHHHHHHHHHHhcC---ChHHHHHHhhcCCC--C
Q 006388 71 FGFGSYVFVGS-----PLVDMYAKLGLIYDAKRGFDELPEKN---IVMYNTMITGLLRRG---LVEESRRLFRGMKD--K 137 (647)
Q Consensus 71 ~g~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g---~~~~A~~~~~~~~~--~ 137 (647)
.|++.+..-|. .+++-+...+.+..|.++-..+..|- ...|.....-+++.. +-+-+..+-+++.. .
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~ 505 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT 505 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC
Confidence 35555443333 45667777888999998888777654 456666666666553 33444555555555 4
Q ss_pred CeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCC----CChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHH
Q 006388 138 DSISWTTMITGLMQNGLEREAIDLFREMRLEGLA----MDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGS 213 (647)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 213 (647)
..++|..+.+-..+.|+++-|..+++.=...+.. .+...+...+.-+...|+.+...+++-++.+.- +...
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~-- 580 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSS-- 580 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHH--
Confidence 6678999998888999999998887643222211 122233444455555566555555554444321 0000
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC-CChhHHHHHHHHHHhcCChhHHHHHHH--HH----HHCCCCCCHHHHHHHHHHHh
Q 006388 214 ALVDMYCKCKSIKYAESVFRTMAW-KNVVSWTAMLVGYGQNGCSEEAVKIFC--NM----QRNGIEPDDFTLGSVISSCA 286 (647)
Q Consensus 214 ~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~--~m----~~~g~~p~~~t~~~ll~a~~ 286 (647)
......+...|..+|.+... .|..+ +-..| +.++..+++.-|. .. ...|..|+ ....-.+++
T Consensus 581 ----l~~~l~~~p~a~~lY~~~~r~~~~~~---l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a 649 (829)
T KOG2280|consen 581 ----LFMTLRNQPLALSLYRQFMRHQDRAT---LYDFY-NQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFA 649 (829)
T ss_pred ----HHHHHHhchhhhHHHHHHHHhhchhh---hhhhh-hcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHh
Confidence 01111223334444443322 11111 11111 1222222222211 10 01122333 233334444
Q ss_pred ccCChHHHHHH----------HHHHHH-hCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcC
Q 006388 287 NLASLEEGTQF----------HGRSLV-TGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFG 355 (647)
Q Consensus 287 ~~~~~~~a~~~----------~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g 355 (647)
+........+. .+.+.. .+.....-+.+--+.-+...|+..+|.++-.+..-||-..|-.-+.+++..+
T Consensus 650 ~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~ 729 (829)
T KOG2280|consen 650 KSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIK 729 (829)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhh
Confidence 44332211111 111111 1211212222333444556788888888888888888888888888888888
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHH
Q 006388 356 KANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFI 435 (647)
Q Consensus 356 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 435 (647)
++++-+++-+.+. .+.-|.-...+|.+.|+.++|.+++-... |. .-.+.+|.+.|++.+|.++-
T Consensus 730 kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~---~l-------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 730 KWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG---GL-------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC---Ch-------HHHHHHHHHhccHHHHHHHH
Confidence 8877666655443 14456667778888888888887765431 11 14677788888888877765
Q ss_pred Hh
Q 006388 436 NK 437 (647)
Q Consensus 436 ~~ 437 (647)
-+
T Consensus 794 ~~ 795 (829)
T KOG2280|consen 794 AE 795 (829)
T ss_pred HH
Confidence 44
No 172
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.42 E-value=0.0046 Score=60.04 Aligned_cols=143 Identities=15% Similarity=0.199 Sum_probs=102.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHH
Q 006388 342 VSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSA-CSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMID 420 (647)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 420 (647)
.+|-.++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 367777888888888889999999988542 2233344443333 333577778999999998864 456678889999
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhh
Q 006388 421 ILSRAGRLEEAKSFINKM-PFPPD----AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIY 488 (647)
Q Consensus 421 ~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 488 (647)
.+.+.|+.+.|..+|++. ..-|. ...|...+.--.+.|+.+....+.+++.+.-|++. .+..+.+-|
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~-~~~~f~~ry 150 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN-SLELFSDRY 150 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS--HHHHHHCCT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh-HHHHHHHHh
Confidence 999999999999999987 22233 35899999999999999999999999999888643 333344444
No 173
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0022 Score=60.29 Aligned_cols=106 Identities=13% Similarity=0.066 Sum_probs=89.9
Q ss_pred CCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhc---CChhHHHHHHHHHhccCCCCchhHH
Q 006388 408 IRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIH---GNVEIGKWAAESLLELDPYNPASYV 482 (647)
Q Consensus 408 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~p~~~~~~~ 482 (647)
.+-|.+.|-.|...|.+.|+++.|..-|.+. .+.| ++..+..+..++... ....++..+++++++.+|.|..+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 3557899999999999999999999999888 4444 477777777776443 3568899999999999999999999
Q ss_pred HHHHhhhhCCChhHHHHHHHHHHhCCCccCC
Q 006388 483 LLSSIYASKGKWDHVSQLRRTMREKGVRKDP 513 (647)
Q Consensus 483 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 513 (647)
.|+..+...|++.+|...++.|.+..-.-+|
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999999999987655444
No 174
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.40 E-value=0.002 Score=50.41 Aligned_cols=62 Identities=29% Similarity=0.287 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 006388 414 HYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDP 475 (647)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 475 (647)
.+..+...+...|++++|.+.+++. ...| +..+|..+...+...|+.+.|...++++.+..|
T Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 36 AYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 3344444444445555555555443 1122 233455555555555666666666655555544
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.37 E-value=0.017 Score=56.36 Aligned_cols=111 Identities=17% Similarity=0.281 Sum_probs=49.8
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHc-CChHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHhc
Q 006388 316 LVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKF-GKANETIDLFEKMLS----HGLKPD--EVTLIGVLSACSR 388 (647)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~-g~~~~A~~~~~~m~~----~g~~p~--~~t~~~ll~a~~~ 388 (647)
.++.|.+.|++..|-+++.. +...|... |++++|++.|++..+ .| .+. ..++..+...+.+
T Consensus 100 A~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYAR 167 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHH
Confidence 34455566666655544433 34445454 566666666665443 12 111 1134444555566
Q ss_pred CCcHHHHHHHHHHHHHhcCC----CcCh-HHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006388 389 AGLVEKGRHYFEIMVKEYGI----RPIH-DHYTCMIDILSRAGRLEEAKSFINKM 438 (647)
Q Consensus 389 ~g~~~~a~~~~~~~~~~~~~----~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~ 438 (647)
.|++++|.++|++.....-- ..+. ..+-..+-++...|+...|.+.+++.
T Consensus 168 l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 168 LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666666655443111 1111 12222233444456666666666554
No 176
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.33 E-value=0.35 Score=52.38 Aligned_cols=213 Identities=10% Similarity=0.062 Sum_probs=129.1
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHH--hCCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChH
Q 006388 17 ASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMS--SSRRCVDLGRQIHGHILKFGFGSYVFVGSPLVDMYAKLGLIY 94 (647)
Q Consensus 17 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 94 (647)
...+++..|+....+..+.. ||. .|..+++++ .+.|..++|..+++.....+. .|..+...+-.+|.+.|+.+
T Consensus 20 ld~~qfkkal~~~~kllkk~---Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH---PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC---CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhh
Confidence 45678889999999888763 443 456666665 578889999988887776664 37888889999999999999
Q ss_pred HHHHHhccCCC--CCchHHHHHHHHHHhcCChH----HHHHHhhcCCCCCeehHHHHHHHHHhCC-Ch---------hHH
Q 006388 95 DAKRGFDELPE--KNIVMYNTMITGLLRRGLVE----ESRRLFRGMKDKDSISWTTMITGLMQNG-LE---------REA 158 (647)
Q Consensus 95 ~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~----~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~---------~~A 158 (647)
+|..++++..+ |+......+..+|+|.+.+. .|.+++...++ +...+-++++.+.+.- .+ .-|
T Consensus 95 ~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk-~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 95 EAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK-RAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-ccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 99999999886 44445555667777777664 46666776554 3444445555554431 11 223
Q ss_pred HHHHHHHHHCC-CCCChhhHHHHHHHHhcCCChHHHHHHHHH-HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 006388 159 IDLFREMRLEG-LAMDQFTFGSVLTACGGLLALEEGKQIHAF-IIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTM 235 (647)
Q Consensus 159 ~~~~~~m~~~g-~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~-~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 235 (647)
.+.++.+.+.+ -.-+..-...-+..+...|..++|.+++.. ....-...+...-+.-++.+...+++.+-.++-.+.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 34444444433 111111122222233455667777766632 222222333444445566666666666655444443
No 177
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.31 E-value=0.00086 Score=51.70 Aligned_cols=80 Identities=21% Similarity=0.314 Sum_probs=39.3
Q ss_pred cCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcC-hHHHHHHHHHHHHcCCHHHH
Q 006388 354 FGKANETIDLFEKMLSHGL-KPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPI-HDHYTCMIDILSRAGRLEEA 431 (647)
Q Consensus 354 ~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 431 (647)
.|+++.|+.+|+++.+... .|+...+..+..++.+.|++++|..+++. . ...|. ....-.+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 4566666666666665422 11233333455566666666666666655 1 11221 22333345555666666666
Q ss_pred HHHHHh
Q 006388 432 KSFINK 437 (647)
Q Consensus 432 ~~~~~~ 437 (647)
++++++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 665543
No 178
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.29 E-value=0.31 Score=51.04 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCChhhHHHHHHH
Q 006388 413 DHYTCMIDILSRAGRLEEAKSFINKM----PFPPDAIGWATLLSS 453 (647)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~ 453 (647)
.++-.|..--...|..+.|+..--.+ .+-|-..+|..|.-+
T Consensus 1022 yHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALa 1066 (1189)
T KOG2041|consen 1022 YHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALA 1066 (1189)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHH
Confidence 44555555556678888877654333 233444455444433
No 179
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.24 E-value=0.00035 Score=51.35 Aligned_cols=52 Identities=23% Similarity=0.394 Sum_probs=41.1
Q ss_pred HhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 455 RIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 455 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
...|++++|+..++++++.+|+++.....++.+|.+.|++++|.++++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3567888888888888888888888888888888888888888888887654
No 180
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.23 E-value=0.0008 Score=50.25 Aligned_cols=58 Identities=17% Similarity=0.146 Sum_probs=49.5
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhCC
Q 006388 451 LSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREKG 508 (647)
Q Consensus 451 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 508 (647)
...+.+.++++.|..+++++++++|+++..+...+.+|...|++++|.+.+++..+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3567788899999999999999999999999999999999999999999998887643
No 181
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.23 E-value=0.0081 Score=51.90 Aligned_cols=100 Identities=20% Similarity=0.255 Sum_probs=52.9
Q ss_pred CCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCC--CchhH
Q 006388 407 GIRPIHDHYTCMIDILSRAGRLEEAKSFINKM---PFPPDAIGWATLLSSCRIHGNVEIGKWAAESLLELDPY--NPASY 481 (647)
Q Consensus 407 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~ 481 (647)
.+.|+..+--.|...+.+.|+..||...|++. .+.-|......+.++....+++..|...++.+.+-.|. .|...
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 34455555555555555555555555555554 23334455555555555555555555555555555543 34445
Q ss_pred HHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 482 VLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 482 ~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
..++..|...|++.+|+..|+...+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH
Confidence 5555555555555555555555444
No 182
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.18 E-value=0.02 Score=51.02 Aligned_cols=81 Identities=11% Similarity=0.071 Sum_probs=49.0
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHH
Q 006388 341 EVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPD--EVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCM 418 (647)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 418 (647)
...|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|...++...+. .+.....+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHH
Confidence 34556666667777888888888877765432221 235666667777777777777777766542 12223444555
Q ss_pred HHHHH
Q 006388 419 IDILS 423 (647)
Q Consensus 419 i~~~~ 423 (647)
...+.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 55554
No 183
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.17 E-value=0.036 Score=52.47 Aligned_cols=52 Identities=10% Similarity=-0.143 Sum_probs=24.5
Q ss_pred HhCCCChHHHHHHHHHHHHhCCCCchhhH---HHHHHHHHhcCChHHHHHHhccCC
Q 006388 52 SSSRRCVDLGRQIHGHILKFGFGSYVFVG---SPLVDMYAKLGLIYDAKRGFDELP 104 (647)
Q Consensus 52 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~ 104 (647)
+...|++++|...|+.+...-..+ .... -.+..+|.+.+++++|...|++..
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi 96 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFI 96 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 344555555555555555543211 2222 223344555555555555555443
No 184
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.17 E-value=0.00023 Score=43.62 Aligned_cols=33 Identities=24% Similarity=0.553 Sum_probs=30.7
Q ss_pred HHHHhccCCCCchhHHHHHHhhhhCCChhHHHH
Q 006388 467 AESLLELDPYNPASYVLLSSIYASKGKWDHVSQ 499 (647)
Q Consensus 467 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 499 (647)
++++++++|+|+.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678999999999999999999999999999863
No 185
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.15 E-value=0.069 Score=46.39 Aligned_cols=133 Identities=10% Similarity=0.128 Sum_probs=100.5
Q ss_pred CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---ChhhH
Q 006388 372 LKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP---DAIGW 447 (647)
Q Consensus 372 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~ 447 (647)
..|....-..|..+....|+..+|...|++.... -+..|....-.+..+....+++.+|...+++. ...| ++..-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4566666667788888889999999888887752 34556777777888888888999998888876 2222 23344
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 448 ATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 448 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
..+...+...|..++|+..++.++.-.| ++..-......+.++|+.+++..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 5677888899999999999999999888 455556667788899998888776666554
No 186
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.14 E-value=0.0035 Score=60.79 Aligned_cols=128 Identities=12% Similarity=0.049 Sum_probs=91.9
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHH---HHhcCCCc-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-------CC-CCChh
Q 006388 378 TLIGVLSACSRAGLVEKGRHYFEIM---VKEYGIRP-IHDHYTCMIDILSRAGRLEEAKSFINKM-------PF-PPDAI 445 (647)
Q Consensus 378 t~~~ll~a~~~~g~~~~a~~~~~~~---~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~-~p~~~ 445 (647)
.|..|...|.-.|+++.|+...+.- .+++|-.. ....+..+...+.-.|+++.|.+.++.. +. ...+.
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555555666678899988776532 23444332 2356788888899999999999988764 21 12355
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhc----cC--CCCchhHHHHHHhhhhCCChhHHHHHHHHHH
Q 006388 446 GWATLLSSCRIHGNVEIGKWAAESLLE----LD--PYNPASYVLLSSIYASKGKWDHVSQLRRTMR 505 (647)
Q Consensus 446 ~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 505 (647)
+.-+|.+.|....+++.|+..+.+-+. ++ .....++.+|+++|...|.-+.|..+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 667889999988999999988876443 22 2356788999999999999999988876554
No 187
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.14 E-value=0.00099 Score=49.07 Aligned_cols=65 Identities=25% Similarity=0.277 Sum_probs=52.2
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcC-ChhHHHHHHHHHhccCC
Q 006388 411 IHDHYTCMIDILSRAGRLEEAKSFINKM-PFPPD-AIGWATLLSSCRIHG-NVEIGKWAAESLLELDP 475 (647)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~p 475 (647)
+...|..+...+...|++++|+..|++. ...|+ +..|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456777888888888888888888877 44454 778888888888888 78999999999988887
No 188
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.07 E-value=0.53 Score=49.45 Aligned_cols=372 Identities=15% Similarity=0.133 Sum_probs=174.9
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHhccCCC-CCchHHHHH----------HHHHHhcCChHHHHHHhhcCCCCCeehH
Q 006388 74 GSYVFVGSPLVDMYAKLGLIYDAKRGFDELPE-KNIVMYNTM----------ITGLLRRGLVEESRRLFRGMKDKDSISW 142 (647)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l----------i~~~~~~g~~~~A~~~~~~~~~~~~~~~ 142 (647)
.|.+..|..|...-.+.-.++.|+..|-+... +.+..-..| ...-+--|++++|++++-.+.++|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL--- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL--- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh---
Confidence 46667777776666666666667666655543 111100000 1111235778888888877776664
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCC----hhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 006388 143 TTMITGLMQNGLEREAIDLFREMRLEGLAMD----QFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDM 218 (647)
Q Consensus 143 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 218 (647)
-|..+.+.|++-...++++. -|-..| ...++.+...++....+++|.+.+..--. ...++.+
T Consensus 766 --Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ec 831 (1189)
T KOG2041|consen 766 --AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIEC 831 (1189)
T ss_pred --hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHH
Confidence 34556666777665555432 111111 23455555555555666666665544211 1124555
Q ss_pred HHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 006388 219 YCKCKSIKYAESVFRTMAWKNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFH 298 (647)
Q Consensus 219 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 298 (647)
|.+..++++-+.+-+.+++ |....-.|...+...|.-++|.+.|-+-- .| ...+.+|...+++.+|.++-
T Consensus 832 ly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW~~avela 901 (1189)
T KOG2041|consen 832 LYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQWGEAVELA 901 (1189)
T ss_pred HHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHHHHHHHHH
Confidence 6665666665555555554 33445556677777777777776654321 12 12345566666666665554
Q ss_pred HHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCC
Q 006388 299 GRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFGKANETIDLFEKMLS----HGLKP 374 (647)
Q Consensus 299 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p 374 (647)
+...- |.+. +|+.-+ |.+++.+... ---|..+.+.|+.-+|.+++.+|-+ .+++|
T Consensus 902 q~~~l----~qv~---tliak~--------aaqll~~~~~------~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~ 960 (1189)
T KOG2041|consen 902 QRFQL----PQVQ---TLIAKQ--------AAQLLADANH------MEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPY 960 (1189)
T ss_pred Hhccc----hhHH---HHHHHH--------HHHHHhhcch------HHHHHHhhhcccchhHHHHHHHHhHHHhhccCCH
Confidence 33211 1111 111111 1111111110 0123445567777778888877754 34444
Q ss_pred CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 006388 375 DEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKMPFPPDAIGWATLLSSC 454 (647)
Q Consensus 375 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~ 454 (647)
-..--..++.|..-. +..++.+-.+...+ +|...+... +...|-+.++-.+.+..- .-+..|.-++-+-
T Consensus 961 lr~KklYVL~AlLvE-~h~~~ik~~~~~~~-~g~~~dat~-------lles~~l~~~~ri~~n~W--rgAEAyHFmilAQ 1029 (1189)
T KOG2041|consen 961 LRLKKLYVLGALLVE-NHRQTIKELRKIDK-HGFLEDATD-------LLESGLLAEQSRILENTW--RGAEAYHFMILAQ 1029 (1189)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhhhhhh-cCcchhhhh-------hhhhhhhhhHHHHHHhhh--hhHHHHHHHHHHH
Confidence 443333344433211 11111111111111 122111110 222333334333333221 1244555566554
Q ss_pred H--hcCChhHHHHHHHHHhcc---CCCCchhHHHHHHhhhhCCChhHHHHHHHHHH
Q 006388 455 R--IHGNVEIGKWAAESLLEL---DPYNPASYVLLSSIYASKGKWDHVSQLRRTMR 505 (647)
Q Consensus 455 ~--~~~~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 505 (647)
+ ..|.++.|.+..-.+..- -| ...+|..|+-+-+....+--..+.|-++.
T Consensus 1030 rql~eg~v~~Al~Tal~L~DYEd~lp-P~eiySllALaaca~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1030 RQLFEGRVKDALQTALILSDYEDFLP-PAEIYSLLALAACAVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred HHHHhchHHHHHHHHhhhccHhhcCC-HHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 4 357777777655444332 23 34566666655554444444444444433
No 189
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.05 E-value=0.015 Score=46.10 Aligned_cols=79 Identities=11% Similarity=0.198 Sum_probs=63.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhcCC--------cHHHHHHHHHHHHHhcCCCcChHHH
Q 006388 345 TALVSGYAKFGKANETIDLFEKMLSHGL-KPDEVTLIGVLSACSRAG--------LVEKGRHYFEIMVKEYGIRPIHDHY 415 (647)
Q Consensus 345 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~~~ 415 (647)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. .+-+.+.+++.|... +++|+.++|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHH
Confidence 3455666667999999999999999999 899999999998876543 244567788888866 899999999
Q ss_pred HHHHHHHHH
Q 006388 416 TCMIDILSR 424 (647)
Q Consensus 416 ~~li~~~~~ 424 (647)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 988887754
No 190
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.02 E-value=0.00096 Score=48.97 Aligned_cols=49 Identities=10% Similarity=0.239 Sum_probs=26.0
Q ss_pred cCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006388 388 RAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM 438 (647)
Q Consensus 388 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 438 (647)
..|++++|.++|+.+.... +-+...+..++.+|.+.|++++|.++++++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455666666666655431 224444555555555556655555555555
No 191
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.02 E-value=0.0088 Score=47.31 Aligned_cols=81 Identities=17% Similarity=0.053 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------ChHHHHHHHHHHHHhCCCcchhH
Q 006388 242 SWTAMLVGYGQNGCSEEAVKIFCNMQRNGI-EPDDFTLGSVISSCANLA--------SLEEGTQFHGRSLVTGLISFITV 312 (647)
Q Consensus 242 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 312 (647)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.++..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344566777777999999999999999999 999999999999887643 34456678888888889999999
Q ss_pred HHHHHHHHHh
Q 006388 313 SNALVTFYGK 322 (647)
Q Consensus 313 ~~~li~~~~~ 322 (647)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9888877654
No 192
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.96 E-value=0.06 Score=52.51 Aligned_cols=116 Identities=17% Similarity=0.218 Sum_probs=75.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHhcCCCcC----hHHHHHHHH
Q 006388 346 ALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRA-GLVEKGRHYFEIMVKEYGIRPI----HDHYTCMID 420 (647)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~ 420 (647)
..+..|...|++..|-+++.++ ...|... |++++|.+.|+....-+..... ...+..+..
T Consensus 99 ~A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 99 KAIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHH
Confidence 3566777778777777666654 3457777 8999999999887654332222 356677888
Q ss_pred HHHHcCCHHHHHHHHHhCC---CC-----CChh-hHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 006388 421 ILSRAGRLEEAKSFINKMP---FP-----PDAI-GWATLLSSCRIHGNVEIGKWAAESLLELDPY 476 (647)
Q Consensus 421 ~~~~~g~~~~A~~~~~~~~---~~-----p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 476 (647)
.+.+.|++++|.++|++.. .. .++. .+...+-.+...||...|...+++..+.+|.
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 9999999999999998762 11 1111 1222233455678999999999999888874
No 193
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.93 E-value=0.0089 Score=58.09 Aligned_cols=129 Identities=15% Similarity=0.154 Sum_probs=100.6
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHH-cCCHHHHHHHHHhC--CCCCChhhHHHHHHH
Q 006388 377 VTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSR-AGRLEEAKSFINKM--PFPPDAIGWATLLSS 453 (647)
Q Consensus 377 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~ 453 (647)
.+|..++...-+.+..+.|+.+|....+. -..+...|.....+-.+ .++.+.|.++|+.. .+..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46788888888888999999999999753 22345566666666455 46666699999988 345578899999999
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCc---hhHHHHHHhhhhCCChhHHHHHHHHHHhC
Q 006388 454 CRIHGNVEIGKWAAESLLELDPYNP---ASYVLLSSIYASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 454 ~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 507 (647)
+...++.+.|..+|++++..-|.+. ..|...+..=.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998766543 57888888888999999999999998864
No 194
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.91 E-value=0.032 Score=58.91 Aligned_cols=134 Identities=16% Similarity=0.135 Sum_probs=97.6
Q ss_pred CCCCCHHHHHHHHHHHhc--C---CcHHHHHHHHHHHHHhcCCCcCh-HHHHHHHHHHHHc--------CCHHHHHHHHH
Q 006388 371 GLKPDEVTLIGVLSACSR--A---GLVEKGRHYFEIMVKEYGIRPIH-DHYTCMIDILSRA--------GRLEEAKSFIN 436 (647)
Q Consensus 371 g~~p~~~t~~~ll~a~~~--~---g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~--------g~~~~A~~~~~ 436 (647)
+.+.|...|...+.+... . +....|..+|++.++ ..|+- ..|..+..++... +++..+.+...
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 356677788888887543 2 347789999999885 46663 4555544444322 12345555555
Q ss_pred hC---C-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhCC
Q 006388 437 KM---P-FPPDAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREKG 508 (647)
Q Consensus 437 ~~---~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 508 (647)
+. + ...++..+.++.-.....|++++|...++++++++| +...|..++.+|...|+.++|.+.+++.....
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 53 2 233467787777777788999999999999999999 57899999999999999999999999887643
No 195
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.89 E-value=0.015 Score=58.96 Aligned_cols=118 Identities=14% Similarity=0.121 Sum_probs=62.7
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhC--CCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC----CCChhh
Q 006388 270 GIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTG--LISFITVSNALVTFYGKCGNIEDSHRLFNEMN----VRDEVS 343 (647)
Q Consensus 270 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~d~~~ 343 (647)
+.+.+...+..++..+....+++.+..++-...... ...-..+..++++.|.+.|..+++..+++.=. =+|..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 345566666677777776666676666666555441 11122233455555555555555555554432 235555
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 006388 344 WTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACS 387 (647)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 387 (647)
+|.|+..+.+.|++..|.++..+|...+...+..|+...+.+|.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 55555555555555555555555555444444444444444443
No 196
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.88 E-value=0.019 Score=58.21 Aligned_cols=119 Identities=11% Similarity=0.026 Sum_probs=69.7
Q ss_pred CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHc--CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC----CChhHH
Q 006388 170 LAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRN--DHKDNVFVGSALVDMYCKCKSIKYAESVFRTMAW----KNVVSW 243 (647)
Q Consensus 170 ~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~ 243 (647)
.+.+...+..+++.+....+++.++.++-..... ....-..+..++|+.|.+.|..+.+..+++.=.. +|..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 4445566666666666666666666665555443 1222233444666666666666666666654332 456666
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 006388 244 TAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANL 288 (647)
Q Consensus 244 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 288 (647)
|.|+..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 666666666666666666666666665555556665555555443
No 197
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.84 E-value=0.051 Score=46.48 Aligned_cols=93 Identities=11% Similarity=0.007 Sum_probs=68.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcC--C-CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC
Q 006388 314 NALVTFYGKCGNIEDSHRLFNEMN--V-RDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAG 390 (647)
Q Consensus 314 ~~li~~~~~~g~~~~A~~~~~~~~--~-~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 390 (647)
-++...+...|++++|.++|+.+. . .+..-|-.|..++...|++++|+..|....... +-|...+-.+..++...|
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 345555667888888888888765 2 256677778888888888888888888888754 234457777777888888
Q ss_pred cHHHHHHHHHHHHHhcC
Q 006388 391 LVEKGRHYFEIMVKEYG 407 (647)
Q Consensus 391 ~~~~a~~~~~~~~~~~~ 407 (647)
+.+.|++.|+..+..-+
T Consensus 118 ~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 118 NVCYAIKALKAVVRICG 134 (157)
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 88888888887776433
No 198
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.34 Score=47.76 Aligned_cols=87 Identities=13% Similarity=0.006 Sum_probs=57.1
Q ss_pred HHHHHcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcC-hHHHHHHHHHHHH
Q 006388 349 SGYAKFGKANETIDLFEKMLSH---GLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPI-HDHYTCMIDILSR 424 (647)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~ 424 (647)
.-..+.|++..|.+.|.+.+.. .+.|+...|.....+..+.|+.++|+.--+... .+.|. ...|-.-..++.-
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLA 333 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHH
Confidence 3456788888888888888763 345566667777777888888888887776654 33332 1222222334445
Q ss_pred cCCHHHHHHHHHhC
Q 006388 425 AGRLEEAKSFINKM 438 (647)
Q Consensus 425 ~g~~~~A~~~~~~~ 438 (647)
.+++++|.+-+++.
T Consensus 334 le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHH
Confidence 67788888888766
No 199
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.81 E-value=0.0045 Score=62.00 Aligned_cols=62 Identities=10% Similarity=0.042 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 006388 412 HDHYTCMIDILSRAGRLEEAKSFINKM-PFPPDA----IGWATLLSSCRIHGNVEIGKWAAESLLEL 473 (647)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 473 (647)
...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555555555555555555555443 334442 23555555555555555555555555554
No 200
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.79 E-value=0.63 Score=45.89 Aligned_cols=279 Identities=12% Similarity=0.123 Sum_probs=147.2
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHHHHHH
Q 006388 7 VSWNLLISGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSPLVDM 86 (647)
Q Consensus 7 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 86 (647)
++|..+...-...|+..-|..+++. .|+..-- +..+...|+.+.| +.+.++.| .+| -+|..|+.+
T Consensus 1 IS~a~IA~~A~~~GR~~LA~~LL~~-------Ep~~~~q---VplLL~m~e~e~A---L~kAi~Sg-D~D-Li~~vLl~L 65 (319)
T PF04840_consen 1 ISYAEIARKAYEEGRPKLATKLLEL-------EPRASKQ---VPLLLKMGEDELA---LNKAIESG-DTD-LIYLVLLHL 65 (319)
T ss_pred CCHHHHHHHHHHcChHHHHHHHHHc-------CCChHHH---HHHHhcCCchHHH---HHHHHHcC-Ccc-HHHHHHHHH
Confidence 4678888888889999999887763 3333221 2223345555544 45566666 333 234444443
Q ss_pred HHhcCChHHHHHHhccCCCCCchHHHHHHHHHHhcCChHHHHHHhhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHHHH
Q 006388 87 YAKLGLIYDAKRGFDELPEKNIVMYNTMITGLLRRGLVEESRRLFRGMKDKDSISWTTMITGLMQNGLEREAIDLFREMR 166 (647)
Q Consensus 87 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 166 (647)
--+. ...+-.+++...+ .. ..+...|++..+.+.-..+|.+-.+........+-.++.. .+.++-...+....
T Consensus 66 ~~~l-~~s~f~~il~~~p----~a-~~l~~~~~r~~~~~~L~~~y~q~d~~~~~a~~~l~~~~~~-~~~~~~~~~L~~a~ 138 (319)
T PF04840_consen 66 KRKL-SLSQFFKILNQNP----VA-SNLYKKYCREQDRELLKDFYYQEDRFQELANLHLQEALSQ-KDVEEKISFLKQAQ 138 (319)
T ss_pred HHhC-CHHHHHHHHHhCc----ch-HHHHHHHHHhccHHHHHHHHHhcchHHHHHHHHHHHHHhC-CChHHHHHHHHHHH
Confidence 3222 2222222222221 11 3345556666666665555544322211122222222222 22222222222221
Q ss_pred HC-CCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH----cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChh
Q 006388 167 LE-GLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIR----NDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMAWKNVV 241 (647)
Q Consensus 167 ~~-g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~----~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~ 241 (647)
+. +-..+......++ ++-.++++.-.+ .+......+.+..+.-+...|+...|.++-.+..-++-.
T Consensus 139 ~~y~~~k~~~f~~~~~---------e~q~~Ll~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkr 209 (319)
T PF04840_consen 139 KLYSKSKNDAFEAKLI---------EEQIKLLEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAEKLKKEFKVPDKR 209 (319)
T ss_pred HHHHhcchhHHHHHHH---------HHHHHHHHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHHHHHHHcCCcHHH
Confidence 10 0000111111111 111222222111 111111223344466667788889999998888888888
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 006388 242 SWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYG 321 (647)
Q Consensus 242 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 321 (647)
-|-..|.+++..++|++-.++... +-.+..|-.++.+|...|...+|..+...+ .+..-+.+|.
T Consensus 210 fw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~~yI~k~----------~~~~rv~~y~ 273 (319)
T PF04840_consen 210 FWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEASKYIPKI----------PDEERVEMYL 273 (319)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHHHHHHhC----------ChHHHHHHHH
Confidence 999999999999999887765432 223477888888888888888888776552 1245678888
Q ss_pred hcCCHHHHHHH
Q 006388 322 KCGNIEDSHRL 332 (647)
Q Consensus 322 ~~g~~~~A~~~ 332 (647)
++|++.+|.+.
T Consensus 274 ~~~~~~~A~~~ 284 (319)
T PF04840_consen 274 KCGDYKEAAQE 284 (319)
T ss_pred HCCCHHHHHHH
Confidence 88888888655
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.77 E-value=0.0098 Score=56.74 Aligned_cols=92 Identities=14% Similarity=0.136 Sum_probs=50.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---chhHHHHHH
Q 006388 415 YTCMIDILSRAGRLEEAKSFINKM-PFPPD----AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYN---PASYVLLSS 486 (647)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 486 (647)
|..-+..+.+.|++++|...|+.. ...|+ ...+--+...+...|+++.|...|+++++..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 444444444455666666555554 12222 2344445556666666666666666666655543 344445566
Q ss_pred hhhhCCChhHHHHHHHHHHh
Q 006388 487 IYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 487 ~~~~~g~~~~a~~~~~~m~~ 506 (647)
+|...|++++|.++++++.+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666554
No 202
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.76 E-value=0.082 Score=50.04 Aligned_cols=173 Identities=10% Similarity=0.047 Sum_probs=100.5
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCC---hhh---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-
Q 006388 316 LVTFYGKCGNIEDSHRLFNEMNVRD---EVS---WTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSR- 388 (647)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~~~~~d---~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~- 388 (647)
....+.+.|++++|.+.|+.+.... ... .-.++.+|.+.+++++|...|++..+.-..-...-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 4444566788888888888776321 111 233456677788888888888888775322222233333333321
Q ss_pred -C---------------Cc---HHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhhHHH
Q 006388 389 -A---------------GL---VEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKMPFPPDAIGWAT 449 (647)
Q Consensus 389 -~---------------g~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 449 (647)
. .+ ..+|...|+.+++.+ |+ ..-..+|...+..+...--. ---.
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~-------------S~ya~~A~~rl~~l~~~la~-~e~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PN-------------SQYTTDATKRLVFLKDRLAK-YELS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cC-------------ChhHHHHHHHHHHHHHHHHH-HHHH
Confidence 0 01 223444555554432 22 22233343333322100000 0013
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCC---chhHHHHHHhhhhCCChhHHHHHHHHHH
Q 006388 450 LLSSCRIHGNVEIGKWAAESLLELDPYN---PASYVLLSSIYASKGKWDHVSQLRRTMR 505 (647)
Q Consensus 450 ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 505 (647)
...-|.+.|.+..|..-++.+++.-|+. +.+...+..+|...|..++|.++...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 3445778889999999999999888764 4667788899999999999999887654
No 203
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.75 E-value=0.64 Score=45.53 Aligned_cols=285 Identities=15% Similarity=0.089 Sum_probs=167.7
Q ss_pred hHHHHHHHHHh--CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHh--cCCChHHHHHHHHHHHHcCCCCchhH--HHH
Q 006388 141 SWTTMITGLMQ--NGLEREAIDLFREMRLEGLAMDQFTFGSVLTACG--GLLALEEGKQIHAFIIRNDHKDNVFV--GSA 214 (647)
Q Consensus 141 ~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~ 214 (647)
.|.+|-.++.- .|+-..|.++-.+-.+. +.-|...+..++.+-. -.|+.+.|++-|+.|... |.... ...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 45555555544 34555555544443221 3445555666665543 347777777777777642 22221 122
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhc-
Q 006388 215 LVDMYCKCKSIKYAESVFRTMAWK---NVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNG-IEPDDF--TLGSVISSCAN- 287 (647)
Q Consensus 215 li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~- 287 (647)
|.-.--+.|..+.|+..-++.-.. -...|.+.+...+..|+|+.|+++.+.-+... +.++.. .-..++.+-+.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 222334567777777666654432 24578888899999999999999988766543 445543 22233333221
Q ss_pred --cCChHHHHHHHHHHHHhCCCcchh-HHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhhHHHHHHHHHHcCChHHHHH
Q 006388 288 --LASLEEGTQFHGRSLVTGLISFIT-VSNALVTFYGKCGNIEDSHRLFNEMNV--RDEVSWTALVSGYAKFGKANETID 362 (647)
Q Consensus 288 --~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~--~d~~~~~~li~~~~~~g~~~~A~~ 362 (647)
..+...|+..-.+..+. .||.. ....-...+.+.|++.++-.+++.+-+ |.+..|. .|....-.+.++.
T Consensus 240 ~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~----lY~~ar~gdta~d 313 (531)
T COG3898 240 LLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL----LYVRARSGDTALD 313 (531)
T ss_pred HhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH----HHHHhcCCCcHHH
Confidence 13445555555554443 33322 122345678888999999888888763 3333332 3333333344555
Q ss_pred HHHHHHH-CCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHH-cCCHHHHHHHHHhC
Q 006388 363 LFEKMLS-HGLKPDEV-TLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSR-AGRLEEAKSFINKM 438 (647)
Q Consensus 363 ~~~~m~~-~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~ 438 (647)
-+++... ..++||.. ....+..+-...|++..|..--+... ...|....|..|.+.-.- .|+-.++...+.+.
T Consensus 314 RlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 314 RLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 5555443 23566654 66667777778888888877666554 457888888888877654 48888888888776
No 204
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.74 E-value=0.018 Score=47.36 Aligned_cols=87 Identities=21% Similarity=0.078 Sum_probs=57.7
Q ss_pred HHHHHHcCCHHHHHHHHHhC---CCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCC---CchhHHHHHHhhhh
Q 006388 419 IDILSRAGRLEEAKSFINKM---PFPPD--AIGWATLLSSCRIHGNVEIGKWAAESLLELDPY---NPASYVLLSSIYAS 490 (647)
Q Consensus 419 i~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 490 (647)
..++-..|+.++|..++++. +.... ...+-.+.++++..|++++|..++++..+..|+ +......++.++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 34455667777777777655 22211 345556777777788888888888877777676 55556666777778
Q ss_pred CCChhHHHHHHHHHH
Q 006388 491 KGKWDHVSQLRRTMR 505 (647)
Q Consensus 491 ~g~~~~a~~~~~~m~ 505 (647)
.|+.++|.+.+-...
T Consensus 88 ~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 88 LGRPKEALEWLLEAL 102 (120)
T ss_pred CCCHHHHHHHHHHHH
Confidence 888888877765443
No 205
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.73 E-value=0.018 Score=51.64 Aligned_cols=97 Identities=18% Similarity=0.287 Sum_probs=73.5
Q ss_pred HHHHhhc--CCCChhhHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC-------------
Q 006388 330 HRLFNEM--NVRDEVSWTALVSGYAK-----FGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRA------------- 389 (647)
Q Consensus 330 ~~~~~~~--~~~d~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 389 (647)
...|+.. ..+|..+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 35677777777777765 467777788888999999999999999999887542
Q ss_pred ---CcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCC
Q 006388 390 ---GLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGR 427 (647)
Q Consensus 390 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 427 (647)
.+-+-|+++++.|.. +|+.||.+++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 124568888999965 5999999999999998877764
No 206
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.71 E-value=0.0033 Score=41.31 Aligned_cols=42 Identities=24% Similarity=0.427 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHH
Q 006388 445 IGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSS 486 (647)
Q Consensus 445 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 486 (647)
.+|..+..++...|++++|++.++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467888999999999999999999999999999988887764
No 207
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=0.094 Score=48.21 Aligned_cols=167 Identities=11% Similarity=0.007 Sum_probs=112.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCC--C--------hhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006388 212 GSALVDMYCKCKSIKYAESVFRTMAWK--N--------VVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSV 281 (647)
Q Consensus 212 ~~~li~~y~~~g~~~~A~~~~~~~~~~--~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 281 (647)
++.|.+.|.-..-+++-...|+.-..+ . ....+.++..+.-.|.+.-.+.++.+..+...+.+....+.+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 344555554444444444444433221 1 234466777777788888889999999887656677888888
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCcc-----hhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHH
Q 006388 282 ISSCANLASLEEGTQFHGRSLVTGLISF-----ITVSNALVTFYGKCGNIEDSHRLFNEMNVR---DEVSWTALVSGYAK 353 (647)
Q Consensus 282 l~a~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---d~~~~~~li~~~~~ 353 (647)
.+...+.|+.+.|...++...+..-..+ ..+.......|.-..++.+|...|.+++.. |++.-|.-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 8888999999999999998776533333 333334444566678888888888888744 55566665555666
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHH
Q 006388 354 FGKANETIDLFEKMLSHGLKPDEVTLI 380 (647)
Q Consensus 354 ~g~~~~A~~~~~~m~~~g~~p~~~t~~ 380 (647)
.|+..+|++..+.|++. .|...+-.
T Consensus 299 lg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHhcc--CCccchhh
Confidence 78899999999999875 45544433
No 208
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.68 E-value=0.035 Score=53.01 Aligned_cols=101 Identities=12% Similarity=0.117 Sum_probs=68.9
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcC-hHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCC-ChhhHHHHH
Q 006388 378 TLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPI-HDHYTCMIDILSRAGRLEEAKSFINKM----PFPP-DAIGWATLL 451 (647)
Q Consensus 378 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll 451 (647)
.|...+....+.|++++|...|+.+++.+.-.+- ...+-.+...|...|++++|...|+.+ |..| ....+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 4444444445567777888777777765432221 245566778888888888888888776 2222 244555667
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCc
Q 006388 452 SSCRIHGNVEIGKWAAESLLELDPYNP 478 (647)
Q Consensus 452 ~~~~~~~~~~~a~~~~~~~~~~~p~~~ 478 (647)
..+...|+.+.|...++++++..|++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 777788999999999999999988754
No 209
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.67 E-value=0.014 Score=50.50 Aligned_cols=68 Identities=25% Similarity=0.385 Sum_probs=54.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHH-----hCCCccCC
Q 006388 446 GWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMR-----EKGVRKDP 513 (647)
Q Consensus 446 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~~~~ 513 (647)
....++..+...|+++.|...+++++..+|.+...|..++.+|...|+..+|.++++++. +.|+.|.|
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 456677778889999999999999999999999999999999999999999999998885 45776654
No 210
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.67 E-value=0.0063 Score=45.31 Aligned_cols=63 Identities=24% Similarity=0.272 Sum_probs=50.8
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHH
Q 006388 420 DILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYV 482 (647)
Q Consensus 420 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 482 (647)
..|.+.+++++|.++++++ ...| ++..|......+...|++++|...++++++..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 4677888899999888887 4445 4777888888889999999999999999999997765543
No 211
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.59 E-value=0.067 Score=44.00 Aligned_cols=92 Identities=16% Similarity=0.091 Sum_probs=54.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCChHHHHHHHHHHHHhCCC--cchhHHHHHHHHHH
Q 006388 246 MLVGYGQNGCSEEAVKIFCNMQRNGIEPDD--FTLGSVISSCANLASLEEGTQFHGRSLVTGLI--SFITVSNALVTFYG 321 (647)
Q Consensus 246 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~ 321 (647)
+..++-..|+.++|+.+|++....|+..+. ..+..+-+++...|++++|..+++......-. .+..+...+...+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 445667778888888888888887765542 34455566667777777777777766654211 01122222333445
Q ss_pred hcCCHHHHHHHHhhcC
Q 006388 322 KCGNIEDSHRLFNEMN 337 (647)
Q Consensus 322 ~~g~~~~A~~~~~~~~ 337 (647)
..|+.++|.+.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5566666665554433
No 212
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.58 E-value=0.079 Score=48.69 Aligned_cols=135 Identities=10% Similarity=0.024 Sum_probs=72.2
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc-----hhHHHHHHH
Q 006388 143 TTMITGLMQNGLEREAIDLFREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDN-----VFVGSALVD 217 (647)
Q Consensus 143 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~li~ 217 (647)
+.++..+.-.|.+.-.+.++.+.++...+.+......+.+.-.+.|+.+.|...++.+.+..-..| .-+......
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 444555555566666666666666655444555555555656666666666666665554322222 222223333
Q ss_pred HHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 006388 218 MYCKCKSIKYAESVFRTMAWK---NVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLG 279 (647)
Q Consensus 218 ~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 279 (647)
.|.-.+++..|...|++++.. |++.-|.-.-+..-.|+..+|++..+.|... .|...+-.
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 445555666666666665543 3444444444444456666666666666654 34443333
No 213
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.55 E-value=0.027 Score=50.53 Aligned_cols=96 Identities=14% Similarity=0.160 Sum_probs=65.4
Q ss_pred HHHhcC--CCCChhHHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--------------
Q 006388 230 SVFRTM--AWKNVVSWTAMLVGYGQN-----GCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANL-------------- 288 (647)
Q Consensus 230 ~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-------------- 288 (647)
..|+.. ..+|-.+|..++..|.+. |..+=....+..|.+-|+.-|..+|+.||..+-+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344444 345666666666666543 55666666777788888888888888888776432
Q ss_pred --CChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCC
Q 006388 289 --ASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGN 325 (647)
Q Consensus 289 --~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 325 (647)
.+-+.|..++++|...|+-||..++..|++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2345677888888888888888888888877766543
No 214
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.51 E-value=0.34 Score=48.20 Aligned_cols=160 Identities=18% Similarity=0.166 Sum_probs=97.5
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCC---C----hhhHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006388 315 ALVTFYGKCGNIEDSHRLFNEMNVR---D----EVSWTALVSGYAK---FGKANETIDLFEKMLSHGLKPDEVTLIGVLS 384 (647)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~~~~~---d----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 384 (647)
.++-.|-...+++...++.+.+... + ...--...-++-+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577777888888888877633 1 1111123344555 7888888888888666666777777777665
Q ss_pred HHh---------cCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHH----HHHHHH---Hh-C---C-C--C
Q 006388 385 ACS---------RAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLE----EAKSFI---NK-M---P-F--P 441 (647)
Q Consensus 385 a~~---------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~~-~---~-~--~ 441 (647)
.|- .....++|...|.+. +.+.|+..+--.++.++.-.|... +..++- .. . + . .
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 542 122466777777644 355566543333334444444322 222222 11 1 1 2 2
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 006388 442 PDAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYN 477 (647)
Q Consensus 442 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 477 (647)
.|-..+.+++.++.-.|+.+.|.++++++.++.|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 344555788999999999999999999999988754
No 215
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.45 E-value=0.47 Score=49.33 Aligned_cols=53 Identities=11% Similarity=-0.018 Sum_probs=29.8
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 006388 277 TLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNV 338 (647)
Q Consensus 277 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 338 (647)
+...+..-+-+...+..|.++|..+-.. ..++++....+++++|..+-++.++
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 3333333344445555566666555332 2466666677777777777766663
No 216
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.042 Score=53.95 Aligned_cols=63 Identities=14% Similarity=0.071 Sum_probs=57.3
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 444 AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 444 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
..++..|...+.+.+.+..|+...++.++++|+|..++..-+.+|...|+++.|+..|+++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 345677777888999999999999999999999999999999999999999999999999877
No 217
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.20 E-value=1.6 Score=43.82 Aligned_cols=70 Identities=16% Similarity=0.231 Sum_probs=56.6
Q ss_pred HHHHhCCCCC----ChhhHHHHHHH--HHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHH
Q 006388 433 SFINKMPFPP----DAIGWATLLSS--CRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRT 503 (647)
Q Consensus 433 ~~~~~~~~~p----~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 503 (647)
.++++.++.| +...-|.|..| +..+|++.++.-...-+.+..| ++.+|..++-......++++|..++..
T Consensus 445 ~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 445 DFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 4455555554 24455666665 4678999999999999999999 899999999999999999999999986
No 218
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.17 E-value=0.34 Score=39.65 Aligned_cols=140 Identities=16% Similarity=0.139 Sum_probs=80.3
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHH
Q 006388 352 AKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEA 431 (647)
Q Consensus 352 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 431 (647)
.-.|..++..++..+...+ .+..-++-++--....-+-+-..+.++.+-+-+.+. .+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence 3456777777777776653 233334444433333333344444455443322222 24444444
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhCCCc
Q 006388 432 KSFINKMPFPPDAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREKGVR 510 (647)
Q Consensus 432 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 510 (647)
..-+-.++ .+......-+.+....|.-++-.+++..+.+.+..+|....-++++|.+.|+..++.+++.+.-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44444443 234455666778888999999999998888766668899999999999999999999999999999985
No 219
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.11 E-value=2.2 Score=44.55 Aligned_cols=181 Identities=13% Similarity=0.121 Sum_probs=123.3
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--CCHHHHHHH
Q 006388 308 SFITVSNALVTFYGKCGNIEDSHRLFNEMNVR---DEVSWTALVSGYAKFGKANETIDLFEKMLSHGLK--PDEVTLIGV 382 (647)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~l 382 (647)
++..+|+..++.-.+.|+.+.+.-+|++...| =...|--.+.-....|+.+-|..++....+--++ |....+.+.
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 35677888888888899999999999887755 2234544444444458888888777766654322 333333332
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCcCh-HHHHHHHHHHHHcCCHHHHH---HHHHhC-CCCCChhhHHHHHHH----
Q 006388 383 LSACSRAGLVEKGRHYFEIMVKEYGIRPIH-DHYTCMIDILSRAGRLEEAK---SFINKM-PFPPDAIGWATLLSS---- 453 (647)
Q Consensus 383 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~ll~~---- 453 (647)
-+-..|+++.|..+++.+..++ |+. ..-.--+....+.|..+.+. +++... +.+.+..+...+.--
T Consensus 375 --f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 375 --FEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARL 449 (577)
T ss_pred --HHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHH
Confidence 3455789999999999998753 543 33344456677889998888 555444 223333333333322
Q ss_pred -HHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCC
Q 006388 454 -CRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGK 493 (647)
Q Consensus 454 -~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 493 (647)
+...++.+.|..++.++.+..|++...|..+++.....+.
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 3456889999999999999999999999999988877663
No 220
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.09 E-value=2.6 Score=45.29 Aligned_cols=100 Identities=13% Similarity=0.093 Sum_probs=65.8
Q ss_pred HHHHHhcCChHHHHHHhccCCCC-----CchHHHHHHHHHHhcCChHHHHHHhhcCCCCCeehHHHHHHHHHhCCChhHH
Q 006388 84 VDMYAKLGLIYDAKRGFDELPEK-----NIVMYNTMITGLLRRGLVEESRRLFRGMKDKDSISWTTMITGLMQNGLEREA 158 (647)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 158 (647)
++.+.+.+.+++|..+-+..... -...+..+|..+.-.|++++|-...-.|...+..-|.--+.-+...++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 45556677778887777665531 2346777888888888888888888888887777787777777777766544
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 006388 159 IDLFREMRLEGLAMDQFTFGSVLTACGG 186 (647)
Q Consensus 159 ~~~~~~m~~~g~~pd~~t~~~ll~~~~~ 186 (647)
..+ +.......+...|-.+|..+..
T Consensus 443 a~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 443 APY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hcc---CCCCCcccCchHHHHHHHHHHH
Confidence 333 2222222345556666666654
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.05 E-value=0.0087 Score=45.23 Aligned_cols=61 Identities=13% Similarity=0.116 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHhcc----CCC---CchhHHHHHHhhhhCCChhHHHHHHHHHH
Q 006388 445 IGWATLLSSCRIHGNVEIGKWAAESLLEL----DPY---NPASYVLLSSIYASKGKWDHVSQLRRTMR 505 (647)
Q Consensus 445 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 505 (647)
.+++.+...+...|++++|+..+++++++ +++ -..++..++.+|...|++++|.+++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35556666666666666666666665543 111 24567777888888888888888877654
No 222
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.14 Score=48.57 Aligned_cols=110 Identities=15% Similarity=0.189 Sum_probs=65.9
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHhcCCCcChHHHH
Q 006388 340 DEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACS---RAGLVEKGRHYFEIMVKEYGIRPIHDHYT 416 (647)
Q Consensus 340 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~---~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 416 (647)
|...|-.|...|...|+++.|...|.+..+. -.+|...+..+..++. ......++..+|+++.+ .-+-++....
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~--~D~~~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA--LDPANIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh--cCCccHHHHH
Confidence 6777888888888888888888888877763 1223334444444432 23345567777777764 2233445555
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCChhhHHHHHH
Q 006388 417 CMIDILSRAGRLEEAKSFINKM-PFPPDAIGWATLLS 452 (647)
Q Consensus 417 ~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~ 452 (647)
.|...+...|++.+|...|+.| ..-|....|..++.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 6666666777777777777766 33333344544443
No 223
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.95 E-value=0.55 Score=43.19 Aligned_cols=49 Identities=14% Similarity=0.132 Sum_probs=36.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCc---hhHHHHHHhhhhCCChhHHH
Q 006388 450 LLSSCRIHGNVEIGKWAAESLLELDPYNP---ASYVLLSSIYASKGKWDHVS 498 (647)
Q Consensus 450 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~ 498 (647)
+..-|.+.|.+..|..-++.+++.-|+.+ .+...++.+|.+.|..+.+.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 34457788999999999999999988754 45677888899999888443
No 224
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.93 E-value=0.061 Score=52.53 Aligned_cols=255 Identities=16% Similarity=0.093 Sum_probs=143.2
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCChh----hHHHHHHHHhcCCChHHHHHHHHHHHH--c--CC-CCchhHHHHHHHH
Q 006388 148 GLMQNGLEREAIDLFREMRLEGLAMDQF----TFGSVLTACGGLLALEEGKQIHAFIIR--N--DH-KDNVFVGSALVDM 218 (647)
Q Consensus 148 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~--~--g~-~~~~~~~~~li~~ 218 (647)
-+++.|+....+.+|+..++.|.. |-. .|..+-++|.-.+++++|.++|..=+- . |- .........|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 367777777778888777776643 333 344455556666777777777654221 1 10 0011111223334
Q ss_pred HHhcCCHHHHHHHHhcCC-------CC--ChhHHHHHHHHHHhcCC--------------------hhHHHHHHHHHH--
Q 006388 219 YCKCKSIKYAESVFRTMA-------WK--NVVSWTAMLVGYGQNGC--------------------SEEAVKIFCNMQ-- 267 (647)
Q Consensus 219 y~~~g~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~-- 267 (647)
+--.|.+++|.-.-.+-. .+ ...++-.+...|...|+ ++.|.+.|.+=.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 444556666544322211 11 12234445555555443 233444443221
Q ss_pred --HCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHh----CC-CcchhHHHHHHHHHHhcCCHHHHHHHHhhcC--
Q 006388 268 --RNGIEP-DDFTLGSVISSCANLASLEEGTQFHGRSLVT----GL-ISFITVSNALVTFYGKCGNIEDSHRLFNEMN-- 337 (647)
Q Consensus 268 --~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-- 337 (647)
+.|-.. --..|..+-+.|.-.|+++.|...|+.-+.. |- ......+..|.+++.-.|+++.|.+.++...
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 111110 1134555556666678899998887754432 21 1234556678888888899999988887532
Q ss_pred -----CC--ChhhHHHHHHHHHHcCChHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 006388 338 -----VR--DEVSWTALVSGYAKFGKANETIDLFEKMLS----HG-LKPDEVTLIGVLSACSRAGLVEKGRHYFEIMV 403 (647)
Q Consensus 338 -----~~--d~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 403 (647)
.+ ...+.-+|...|.-..++++|+.++.+-+. .+ ..-....+.+|..++...|..++|..+.+...
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 33 234556677888888888899888776432 11 12234577788888888888888887765443
No 225
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.91 E-value=0.063 Score=43.59 Aligned_cols=90 Identities=19% Similarity=0.169 Sum_probs=74.0
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCC----chhHHHHHHhhhhCCC
Q 006388 420 DILSRAGRLEEAKSFINKM-PFP-PDAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYN----PASYVLLSSIYASKGK 493 (647)
Q Consensus 420 ~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~ 493 (647)
-+++..|+++.|++.|.+. .+- ..+..||.-..+++-+|+.++|..-+++++++..+. -.+|+.-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3577889999999999877 333 357889999999999999999999999999875432 2458888899999999
Q ss_pred hhHHHHHHHHHHhCCC
Q 006388 494 WDHVSQLRRTMREKGV 509 (647)
Q Consensus 494 ~~~a~~~~~~m~~~g~ 509 (647)
-+.|..-|+...+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999999998887665
No 226
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.85 E-value=0.013 Score=44.35 Aligned_cols=59 Identities=22% Similarity=0.215 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-------C-CCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHhc
Q 006388 414 HYTCMIDILSRAGRLEEAKSFINKM-------P-FPPD-AIGWATLLSSCRIHGNVEIGKWAAESLLE 472 (647)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 472 (647)
+|+.+...|.+.|++++|++.+++. + ..|+ ..++..+...+...|++++|+..++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455555555555555555555443 1 1122 44566666666677777777777666554
No 227
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.85 E-value=0.12 Score=42.87 Aligned_cols=49 Identities=14% Similarity=0.305 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHH
Q 006388 372 LKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMID 420 (647)
Q Consensus 372 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 420 (647)
..|+..+..+++.+|+..|++..|.++.+...+.|+++-+...|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4566666666666666666666666666666666665555555555554
No 228
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.62 E-value=1.9 Score=39.99 Aligned_cols=194 Identities=22% Similarity=0.200 Sum_probs=114.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcC-----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 006388 311 TVSNALVTFYGKCGNIEDSHRLFNEMN-----VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLS- 384 (647)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~- 384 (647)
.........+...+.+..+...+.... ......+......+...+++..+...+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 444455555666666666665555543 22334455555556666666677777776665432321 11112222
Q ss_pred HHhcCCcHHHHHHHHHHHHHhcCC--CcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC--hhhHHHHHHHHHhcCC
Q 006388 385 ACSRAGLVEKGRHYFEIMVKEYGI--RPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPPD--AIGWATLLSSCRIHGN 459 (647)
Q Consensus 385 a~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~~~ 459 (647)
++...|+++.+...++..... .. ......+......+...++.++|...+.+. ...|+ ...+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 566677777777777766431 11 122333444444456677777777777766 22233 5566677777777777
Q ss_pred hhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 460 VEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 460 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
.+.+...+.......|.....+..+...+...|.++++...+.+...
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 78888888887777776555666666666666667777777776654
No 229
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.57 E-value=0.59 Score=42.98 Aligned_cols=142 Identities=20% Similarity=0.193 Sum_probs=75.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHH
Q 006388 346 ALVSGYAKFGKANETIDLFEKMLSHGLK-PD-EVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILS 423 (647)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 423 (647)
.....+.+.|++.+|...|+++...-.. |- ......+..++.+.|+++.|...++..++.++-.|... +...+.+.+
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y~~g~~ 88 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALYMLGLS 88 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHHHHHHH
Confidence 3445566777788888888777764211 11 12444556677777777777777777777665555431 111111111
Q ss_pred HcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchh-----------------HHHHHH
Q 006388 424 RAGRLEEAKSFINKMPFPPDAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPAS-----------------YVLLSS 486 (647)
Q Consensus 424 ~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----------------~~~l~~ 486 (647)
.-...... + ......+....|...++.+++..|+++-. -..++.
T Consensus 89 ~~~~~~~~---~----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~ 149 (203)
T PF13525_consen 89 YYKQIPGI---L----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIAR 149 (203)
T ss_dssp HHHHHHHH---H-----------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCccc---h----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10000000 0 00112223455666666666666654322 235678
Q ss_pred hhhhCCChhHHHHHHHHHHhC
Q 006388 487 IYASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 487 ~~~~~g~~~~a~~~~~~m~~~ 507 (647)
.|.+.|++..|..-++.+.+.
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH
Confidence 899999999999999998874
No 230
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.54 E-value=3 Score=41.83 Aligned_cols=77 Identities=12% Similarity=0.099 Sum_probs=54.0
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHHHH
Q 006388 5 DGVSWNLLISGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSPLV 84 (647)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 84 (647)
|+.+|-.||.-|...|.+++..+.+++|..-- |-=...|..-+++-....++.....+|.+.++..+. ...|...+
T Consensus 41 nI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf--p~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~--ldLW~lYl 116 (660)
T COG5107 41 NILSYFQLIQYLETQESMDAEREMYEQLSSPF--PIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN--LDLWMLYL 116 (660)
T ss_pred hHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC--ccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc--HhHHHHHH
Confidence 56678888888888888888888888887432 334456777777666777888888888887766543 44444444
Q ss_pred H
Q 006388 85 D 85 (647)
Q Consensus 85 ~ 85 (647)
+
T Consensus 117 ~ 117 (660)
T COG5107 117 E 117 (660)
T ss_pred H
Confidence 3
No 231
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.21 Score=49.26 Aligned_cols=138 Identities=15% Similarity=0.075 Sum_probs=99.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCC
Q 006388 348 VSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGR 427 (647)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 427 (647)
...|.+.|++..|...|++.... |. +.+.-+.++...... .-...+..|.-.|.+.+.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAEA---------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhh
Confidence 45677888888888888876542 11 111112222222211 122356677888999999
Q ss_pred HHHHHHHHHhC-CCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHH-HHHHHHH
Q 006388 428 LEEAKSFINKM-PFP-PDAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHV-SQLRRTM 504 (647)
Q Consensus 428 ~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m 504 (647)
+.+|++..++. ..+ +|+-..-.-..+|...|+++.|+..|+++++++|.|..+-..|+..-.+..++.+. .++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988876 333 45777777888999999999999999999999999998888888887777666554 7888888
Q ss_pred HhC
Q 006388 505 REK 507 (647)
Q Consensus 505 ~~~ 507 (647)
..+
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 753
No 232
>PRK11906 transcriptional regulator; Provisional
Probab=95.49 E-value=1.2 Score=45.21 Aligned_cols=158 Identities=9% Similarity=0.068 Sum_probs=100.8
Q ss_pred hhH--HHHHHHHHHcC-----ChHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHHh---------cCCcHHHHHHHHHHHH
Q 006388 342 VSW--TALVSGYAKFG-----KANETIDLFEKMLS-HGLKPDEV-TLIGVLSACS---------RAGLVEKGRHYFEIMV 403 (647)
Q Consensus 342 ~~~--~~li~~~~~~g-----~~~~A~~~~~~m~~-~g~~p~~~-t~~~ll~a~~---------~~g~~~~a~~~~~~~~ 403 (647)
..| ...+.+..... ..+.|+.+|.+... +...|+.. .|..+..++. ......+|.+.-+..+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 566 66666654422 34678888888872 23567654 3333332221 1234455666666555
Q ss_pred HhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchh-
Q 006388 404 KEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPPD-AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPAS- 480 (647)
Q Consensus 404 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~- 480 (647)
+ --+-|......+..++.-.|+++.|..+|++. ...|| +.+|......+.-.|+.++|.+.++++++++|....+
T Consensus 332 e--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 D--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred h--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 3 22335667777777778888899999999888 56676 6677777777788899999999999999999874333
Q ss_pred -HHHHHHhhhhCCChhHHHHHHH
Q 006388 481 -YVLLSSIYASKGKWDHVSQLRR 502 (647)
Q Consensus 481 -~~~l~~~~~~~g~~~~a~~~~~ 502 (647)
.-..++.|...+ +++|.+++-
T Consensus 410 ~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 410 VIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHcCCc-hhhhHHHHh
Confidence 334444566554 455665554
No 233
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.48 E-value=0.12 Score=42.98 Aligned_cols=50 Identities=16% Similarity=0.298 Sum_probs=32.1
Q ss_pred CCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCChhhHHHHHHHHHh
Q 006388 407 GIRPIHDHYTCMIDILSRAGRLEEAKSFINKM----PFPPDAIGWATLLSSCRI 456 (647)
Q Consensus 407 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~ 456 (647)
...|+.....+++.+|+..|++..|.++++.. +++-+..+|..|+.-+..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 45566777777777777777777777766554 444446667666665443
No 234
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.31 E-value=0.12 Score=52.08 Aligned_cols=58 Identities=12% Similarity=0.079 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcCh----HHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006388 378 TLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIH----DHYTCMIDILSRAGRLEEAKSFINKM 438 (647)
Q Consensus 378 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~ 438 (647)
.+..+..+|...|++++|...|+..++ +.|+. ..|..+..+|...|++++|++.++++
T Consensus 77 a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 77 DAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555556666666666666666665543 23442 23555666666666666666666554
No 235
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.27 E-value=2.8 Score=47.32 Aligned_cols=157 Identities=18% Similarity=0.232 Sum_probs=89.0
Q ss_pred CCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 006388 223 KSIKYAESVFRTMAWKNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSL 302 (647)
Q Consensus 223 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 302 (647)
+++++|..-+.++. ...|+-.+..--+.|.+.+|+.++ +|+...+..+..+|+. .+.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~------------hL~ 950 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYAD------------HLR 950 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHH------------HHH
Confidence 45566665555554 223444444445566666666664 6777777766666542 111
Q ss_pred HhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--HH
Q 006388 303 VTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVT--LI 380 (647)
Q Consensus 303 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~ 380 (647)
+.. .++-..-+|.++|+.++|++. |...|++.+|+.+..+|.. .-|... -.
T Consensus 951 ~~~------~~~~Aal~Ye~~GklekAl~a------------------~~~~~dWr~~l~~a~ql~~---~~de~~~~a~ 1003 (1265)
T KOG1920|consen 951 EEL------MSDEAALMYERCGKLEKALKA------------------YKECGDWREALSLAAQLSE---GKDELVILAE 1003 (1265)
T ss_pred Hhc------cccHHHHHHHHhccHHHHHHH------------------HHHhccHHHHHHHHHhhcC---CHHHHHHHHH
Confidence 111 122234467778888887554 4456778888777776642 112221 24
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006388 381 GVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM 438 (647)
Q Consensus 381 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 438 (647)
.|..-+...++.-+|-++..+... .| .--+..|+++-.+++|..+....
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~~s----d~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEYLS----DP-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHHhc----CH-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence 455666677777777666654432 22 23445666777777777776655
No 236
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.19 E-value=5.5 Score=42.75 Aligned_cols=333 Identities=11% Similarity=0.071 Sum_probs=195.7
Q ss_pred HCCCCCCCcchHHHH-----HHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCC---hHHHHHHhccCCC
Q 006388 34 KDGLGNLSRITFSTM-----LIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSPLVDMYAKLGL---IYDAKRGFDELPE 105 (647)
Q Consensus 34 ~~g~~~~~~~~~~~l-----l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~ 105 (647)
+-|+ +.+..-|..| +.-+...+.+..|.++-..+...-.. ...++.....-+.+..+ -+.+..+=+++..
T Consensus 425 ~~gI-plT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 425 RIGI-PLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred ccCc-cccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 4566 6665555444 55556677888888887666321111 15677777777777632 2334444444444
Q ss_pred --CCchHHHHHHHHHHhcCChHHHHHHhhcCCCC--------CeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh
Q 006388 106 --KNIVMYNTMITGLLRRGLVEESRRLFRGMKDK--------DSISWTTMITGLMQNGLEREAIDLFREMRLEGLAMDQF 175 (647)
Q Consensus 106 --~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 175 (647)
.+..+|....+-.-.+|+.+-|..+++.=+.. +..-+..-+.-..+.|+.+-...++..|.+. .+..
T Consensus 503 ~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s 579 (829)
T KOG2280|consen 503 KLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRS 579 (829)
T ss_pred cCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHH
Confidence 56678999999999999999999999875432 3344566667777888888888877777653 1222
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH-HhcC-----CCCChhHHHHHHHH
Q 006388 176 TFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESV-FRTM-----AWKNVVSWTAMLVG 249 (647)
Q Consensus 176 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~-~~~~-----~~~~~~~~~~li~~ 249 (647)
.|...+ .+...|..+|.+..+..-. ..|-+.|-...+...+-.+ ++.. .+.-..........
T Consensus 580 ~l~~~l------~~~p~a~~lY~~~~r~~~~------~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~ 647 (829)
T KOG2280|consen 580 SLFMTL------RNQPLALSLYRQFMRHQDR------ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANA 647 (829)
T ss_pred HHHHHH------HhchhhhHHHHHHHHhhch------hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHH
Confidence 222222 2333445555554442100 1122223222222221111 1110 01111222223334
Q ss_pred HHhcCCh----------hHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 006388 250 YGQNGCS----------EEAVKIFCNMQR-NGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVT 318 (647)
Q Consensus 250 ~~~~g~~----------~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 318 (647)
+.+.... .+-+.+.+.+.. .|.....-|.+--+.-+...|+..+|.++-.+.. .||-..|-.-+.
T Consensus 648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~ 723 (829)
T KOG2280|consen 648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLT 723 (829)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHH
Confidence 4443331 111222222221 2334455566666777778888888888766543 567777777788
Q ss_pred HHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHH
Q 006388 319 FYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHY 398 (647)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 398 (647)
+++..+++++-+++-+.... +.-|.-.+.+|.+.|+.++|.+++-+.. +.. -...+|.+.|++.+|.+.
T Consensus 724 aLa~~~kweeLekfAkskks--PIGy~PFVe~c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 724 ALADIKKWEELEKFAKSKKS--PIGYLPFVEACLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred HHHhhhhHHHHHHHHhccCC--CCCchhHHHHHHhcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHHHH
Confidence 88899999888777666544 7788888999999999999998887632 221 456678888888887654
No 237
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.19 E-value=0.38 Score=40.47 Aligned_cols=57 Identities=23% Similarity=0.304 Sum_probs=37.6
Q ss_pred HHHcCCHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 006388 422 LSRAGRLEEAKSFINKM----PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNP 478 (647)
Q Consensus 422 ~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 478 (647)
..+.|++++|.+.|+.+ |..| ....-..|+.++.+.+++++|...+++.++++|.++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 34567777777777666 2222 233445567777778888888888888888877654
No 238
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.00 E-value=2.6 Score=38.76 Aligned_cols=88 Identities=13% Similarity=0.092 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCC-------CCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHhc----cCCCCchhH
Q 006388 414 HYTCMIDILSRAGRLEEAKSFINKMP-------FPPDA-IGWATLLSSCRIHGNVEIGKWAAESLLE----LDPYNPASY 481 (647)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~p~~~~~~ 481 (647)
.|......|.+..+++||-..|.+-. .-|+. ..+-+.+-.+....++..|++.++.--+ ..|++..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 34455566777777777776665542 11221 2234444455556678888888776443 245667777
Q ss_pred HHHHHhhhhCCChhHHHHHHH
Q 006388 482 VLLSSIYASKGKWDHVSQLRR 502 (647)
Q Consensus 482 ~~l~~~~~~~g~~~~a~~~~~ 502 (647)
..|+.+| ..|+.+++.++..
T Consensus 232 enLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 232 ENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHh-ccCCHHHHHHHHc
Confidence 7777776 4577777666553
No 239
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.87 E-value=0.28 Score=45.95 Aligned_cols=57 Identities=16% Similarity=0.154 Sum_probs=30.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCC---CchhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 450 LLSSCRIHGNVEIGKWAAESLLELDPY---NPASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 450 ll~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
|+.++...|+++.|...|..+.+-.|. -|..+.-|+.+..+.|+-++|..+++++.+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 445555555555555555555544433 234455555555555555555555555544
No 240
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.82 E-value=6.4 Score=42.86 Aligned_cols=141 Identities=13% Similarity=0.029 Sum_probs=91.1
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCCh
Q 006388 14 SGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSPLVDMYAKLGLI 93 (647)
Q Consensus 14 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 93 (647)
+-+-+.|++++|..-|-+-...- .| ..+++-+........-..+++.+.+.|+ .+...-+.|+.+|.+.++.
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~~l--e~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~ 447 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIGFL--EP-----SEVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDV 447 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHcccC--Ch-----HHHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcch
Confidence 33457899999998887765321 22 2355556666667777778888899996 4455567899999999999
Q ss_pred HHHHHHhccCCCCCc-hHHHHHHHHHHhcCChHHHHHHhhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHHHH
Q 006388 94 YDAKRGFDELPEKNI-VMYNTMITGLLRRGLVEESRRLFRGMKDKDSISWTTMITGLMQNGLEREAIDLFREMR 166 (647)
Q Consensus 94 ~~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 166 (647)
+.-.+..+...+... +-....+..+-+.+-+++|..+-..... +..... -.+-..+++++|++.+..|.
T Consensus 448 ~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~---ille~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 448 EKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-HEWVLD---ILLEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHH---HHHHHhcCHHHHHHHHhcCC
Confidence 998888877763211 1244556666667777777666544433 222222 22334567777777777664
No 241
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.73 E-value=0.096 Score=45.26 Aligned_cols=69 Identities=7% Similarity=0.059 Sum_probs=48.0
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHH-----HhCCCCchhh
Q 006388 9 WNLLISGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHIL-----KFGFGSYVFV 79 (647)
Q Consensus 9 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~g~~~~~~~ 79 (647)
...++..+...|++++|+++.+.+.... |-|...|..++.++...|+...|.++|+.+. +.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 4456666777888888888888888876 6788888888888888888888888887764 3477777654
No 242
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.71 E-value=5.3 Score=40.19 Aligned_cols=134 Identities=12% Similarity=0.093 Sum_probs=92.6
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHH
Q 006388 341 EVSWTALVSGYAKFGKANETIDLFEKMLSHG-LKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMI 419 (647)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 419 (647)
...|...+..-.+..-.+.|..+|-+..+.| +.++...+++++.-++ .|+...|..+|+.=...+ +.+..--+-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHHHH
Confidence 3456667777667777788888888888887 5666667777776554 467778888887665532 22223334556
Q ss_pred HHHHHcCCHHHHHHHHHhC--CCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 006388 420 DILSRAGRLEEAKSFINKM--PFPPD--AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYN 477 (647)
Q Consensus 420 ~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 477 (647)
.-+.+.++-+.|..+|+.. .+..+ ...|..++.--..-|+...+..+-+++.+.-|+.
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 6677888888888888855 12222 4577888887778888888888777888877753
No 243
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.71 E-value=0.42 Score=46.21 Aligned_cols=162 Identities=14% Similarity=0.155 Sum_probs=92.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCCH---HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCc----ChHH
Q 006388 343 SWTALVSGYAKFGKANETIDLFEKMLS-HGLKPDE---VTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRP----IHDH 414 (647)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~ 414 (647)
+|..+..++-+.-++.+++.+-+.-.. .|..|.. ....++..|....+.++++++.|+...+-..-.. ...+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344445555555555555555444332 2333311 1223345566666677888888877654211111 2356
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-----hhhHHHHHHHHHhcCChhHHHHHHHHHhccC------CC
Q 006388 415 YTCMIDILSRAGRLEEAKSFINKM-------PFPPD-----AIGWATLLSSCRIHGNVEIGKWAAESLLELD------PY 476 (647)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------p~ 476 (647)
|..|...|++..++++|.-+..++ +++.- ..+.-.|.-+++..|..-.|.+..+++.++. |-
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 777888888888888776555443 22111 1223344556777888877888777766532 22
Q ss_pred CchhHHHHHHhhhhCCChhHHHHHHHHH
Q 006388 477 NPASYVLLSSIYASKGKWDHVSQLRRTM 504 (647)
Q Consensus 477 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m 504 (647)
.......++++|...|+.|.|..-++..
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 3344557788888888887777665543
No 244
>PRK11906 transcriptional regulator; Provisional
Probab=94.70 E-value=0.47 Score=48.10 Aligned_cols=116 Identities=9% Similarity=0.056 Sum_probs=87.9
Q ss_pred cHHHHHHHHHHHHHhcCCCcC-hHHHHHHHHHHHH---------cCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcC
Q 006388 391 LVEKGRHYFEIMVKEYGIRPI-HDHYTCMIDILSR---------AGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHG 458 (647)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~ 458 (647)
..+.|..+|.+......+.|+ ...|..+...+.. .....+|.++.++. ...| |+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 456788888888754466665 3455555444322 23445666766665 4444 5777777777778888
Q ss_pred ChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 459 NVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 459 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
+++.|...++++..++|+.+.+|...+....-.|+.++|.+.+++..+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999999988554
No 245
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.63 E-value=0.36 Score=45.24 Aligned_cols=91 Identities=19% Similarity=0.230 Sum_probs=50.4
Q ss_pred CCcHHHHHHHHHHHHHhcCCCc-ChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHhcCChhH
Q 006388 389 AGLVEKGRHYFEIMVKEYGIRP-IHDHYTCMIDILSRAGRLEEAKSFINKM----PFPPD-AIGWATLLSSCRIHGNVEI 462 (647)
Q Consensus 389 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~ll~~~~~~~~~~~ 462 (647)
.|++..|...|...++.|.-.+ ....+--|...+...|++++|..+|..+ |..|- +..+--|.......|+.++
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~ 233 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDE 233 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHH
Confidence 4455666666655555432111 1233334666666666666666666555 22222 3455555566666677777
Q ss_pred HHHHHHHHhccCCCCch
Q 006388 463 GKWAAESLLELDPYNPA 479 (647)
Q Consensus 463 a~~~~~~~~~~~p~~~~ 479 (647)
|...++++.+..|..+.
T Consensus 234 A~atl~qv~k~YP~t~a 250 (262)
T COG1729 234 ACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHHHHHHHCCCCHH
Confidence 77777777777665543
No 246
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.63 E-value=4.1 Score=41.74 Aligned_cols=15 Identities=20% Similarity=0.178 Sum_probs=10.5
Q ss_pred HHHHHHHHhccCCCC
Q 006388 463 GKWAAESLLELDPYN 477 (647)
Q Consensus 463 a~~~~~~~~~~~p~~ 477 (647)
|.+++.++.+.+|.-
T Consensus 365 aveAi~RAvefNPHV 379 (539)
T PF04184_consen 365 AVEAIHRAVEFNPHV 379 (539)
T ss_pred HHHHHHHHHHhCCCC
Confidence 556777887777753
No 247
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.62 E-value=3.6 Score=41.18 Aligned_cols=72 Identities=17% Similarity=0.111 Sum_probs=46.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCC---C----hhHHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006388 214 ALVDMYCKCKSIKYAESVFRTMAWK---N----VVSWTAMLVGYGQ---NGCSEEAVKIFCNMQRNGIEPDDFTLGSVIS 283 (647)
Q Consensus 214 ~li~~y~~~g~~~~A~~~~~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 283 (647)
.|+-.|-...+++...++.+.+... + ...--...-++.+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577777788888888777653 1 1111223344555 7888888888888666666777777777665
Q ss_pred HH
Q 006388 284 SC 285 (647)
Q Consensus 284 a~ 285 (647)
.+
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 54
No 248
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.57 E-value=0.34 Score=45.17 Aligned_cols=100 Identities=16% Similarity=0.183 Sum_probs=80.6
Q ss_pred HHHHHHhhcC--CCChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCc---------
Q 006388 328 DSHRLFNEMN--VRDEVSWTALVSGYAKF-----GKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGL--------- 391 (647)
Q Consensus 328 ~A~~~~~~~~--~~d~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~--------- 391 (647)
..++.|..+. ++|-.+|-+++..|..+ +.++-....++.|.+.|+.-|..+|..||..+-+..-
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456677776 77888999999888654 5667777788999999999999999999998755432
Q ss_pred -------HHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCH
Q 006388 392 -------VEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRL 428 (647)
Q Consensus 392 -------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 428 (647)
-+=++.+++.|.. +|+.||.++-..|++++++.|..
T Consensus 132 F~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HhhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhcccccc
Confidence 2347889999964 69999999999999999998864
No 249
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.46 E-value=4 Score=37.66 Aligned_cols=196 Identities=22% Similarity=0.203 Sum_probs=125.1
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHH-HH
Q 006388 277 TLGSVISSCANLASLEEGTQFHGRSLVT-GLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVR---DEVSWTALVS-GY 351 (647)
Q Consensus 277 t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---d~~~~~~li~-~~ 351 (647)
.+......+...+....+...+...... ........+..+...+...+.+..+.+.+...... +...+..... .+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHH
Confidence 3334444444444444444444444332 22333444455555566666677777777665532 1122333333 67
Q ss_pred HHcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCc-ChHHHHHHHHHHHHcC
Q 006388 352 AKFGKANETIDLFEKMLSHGLKP----DEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRP-IHDHYTCMIDILSRAG 426 (647)
Q Consensus 352 ~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g 426 (647)
...|+++.|...+.+... ..| ....+......+...++.+.+...+....+. ... ....+..+...+...+
T Consensus 141 ~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 141 YELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcc
Confidence 888899999999988855 333 2334444444466788999999999888753 233 3677888888888999
Q ss_pred CHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 006388 427 RLEEAKSFINKM-PFPPD-AIGWATLLSSCRIHGNVEIGKWAAESLLELDPY 476 (647)
Q Consensus 427 ~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 476 (647)
.+++|...+... ...|+ ...+..+...+...+..+.+...+++..+..|.
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999999998877 34444 455666666666667799999999999988885
No 250
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.42 E-value=1.3 Score=37.40 Aligned_cols=18 Identities=17% Similarity=0.071 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHhccCCCC
Q 006388 460 VEIGKWAAESLLELDPYN 477 (647)
Q Consensus 460 ~~~a~~~~~~~~~~~p~~ 477 (647)
...|...|+.+++.-|++
T Consensus 115 ~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHHHHHHHHHHHHHCcCC
Confidence 456777777777777764
No 251
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.37 E-value=2.1 Score=40.70 Aligned_cols=120 Identities=10% Similarity=0.063 Sum_probs=84.0
Q ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhhHHH---HHHHHHhcCChh
Q 006388 385 ACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKMPFPPDAIGWAT---LLSSCRIHGNVE 461 (647)
Q Consensus 385 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---ll~~~~~~~~~~ 461 (647)
.....|++.+|...|+..... .+-+...--.|+..|...|+.++|..++..+|.+-...-|.. -+..+.+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 455678888888888877653 222346667788889999999999999999875444333333 233333444333
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhC
Q 006388 462 IGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 462 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 507 (647)
+... +++-...+|+|...-..|+..|...|+.++|.+.+-.+..+
T Consensus 221 ~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3332 34445678999999999999999999999999988777654
No 252
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.32 E-value=1.2 Score=45.36 Aligned_cols=144 Identities=15% Similarity=0.062 Sum_probs=80.2
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHH--HHcCCHH
Q 006388 352 AKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDIL--SRAGRLE 429 (647)
Q Consensus 352 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~--~~~g~~~ 429 (647)
-+..+.+.-+++-++.++ +.||-.+--.++ +-.....+.++.+++++..+. + ...+. ... ...|.
T Consensus 179 WRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~lg---~s~~~~~~g~-- 245 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EASLG---KSQFLQHHGH-- 245 (539)
T ss_pred HhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHhhc---hhhhhhcccc--
Confidence 344555666666666665 456654433332 233445677888887776543 1 00000 000 00111
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCC--CchhHHHHHHhhhhCCChhHHHHHHHHHHhC
Q 006388 430 EAKSFINKMPFPPDAIGWATLLSSCRIHGNVEIGKWAAESLLELDPY--NPASYVLLSSIYASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 430 ~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 507 (647)
..+.+.+-...|-..+-..|...+++.|+.++|++.++.+++..|. +-.+...|+..+...+.+.++..++.+--+-
T Consensus 246 -~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 246 -FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred -hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 1111111112223344455666777888888888888888776664 4557778888888888888888888876543
Q ss_pred CC
Q 006388 508 GV 509 (647)
Q Consensus 508 g~ 509 (647)
..
T Consensus 325 ~l 326 (539)
T PF04184_consen 325 SL 326 (539)
T ss_pred cC
Confidence 33
No 253
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.31 E-value=0.066 Score=32.57 Aligned_cols=32 Identities=25% Similarity=0.148 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 006388 445 IGWATLLSSCRIHGNVEIGKWAAESLLELDPY 476 (647)
Q Consensus 445 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 476 (647)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777888888888888888888888888875
No 254
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.25 E-value=1.2 Score=42.73 Aligned_cols=113 Identities=14% Similarity=0.092 Sum_probs=49.6
Q ss_pred cCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHhcCCcHHHH
Q 006388 323 CGNIEDSHRLFNEMN---VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGV----LSACSRAGLVEKG 395 (647)
Q Consensus 323 ~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l----l~a~~~~g~~~~a 395 (647)
.|+..+|...++++. ..|..+|+--=.+|...|+...-...+++..-. ..||...|..+ .-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 344444444444444 225555555555555555555555555554432 23333222111 1223345555555
Q ss_pred HHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006388 396 RHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM 438 (647)
Q Consensus 396 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 438 (647)
.+.-++..+- .+.|.-.-.++...+...|+..++.++..+-
T Consensus 195 Ek~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 195 EKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 5544433321 1112233334444455555555555555444
No 255
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.20 E-value=0.82 Score=47.35 Aligned_cols=135 Identities=16% Similarity=0.208 Sum_probs=86.4
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHH
Q 006388 350 GYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLE 429 (647)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 429 (647)
.....|+++++.++.+.-.-..--| ..-...++.-+.+.|..+.|+++-+.-.. -.++..+.|+++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~ 335 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP-KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNLD 335 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG---HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-HH
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC-hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCHH
Confidence 3455677877766664211100012 33466777777888888888877443222 245567899999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhCCC
Q 006388 430 EAKSFINKMPFPPDAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREKGV 509 (647)
Q Consensus 430 ~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 509 (647)
.|.++.++.. +...|..|......+|+++.|++.+++. .-+..|+-.|...|+.+.-.++-+....+|-
T Consensus 336 ~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 336 IALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp HHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 9998888764 7779999999999999999999999875 3566788888888988777777776666553
No 256
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.17 E-value=3 Score=35.51 Aligned_cols=42 Identities=14% Similarity=0.169 Sum_probs=19.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 006388 346 ALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSR 388 (647)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 388 (647)
.++..+...+.......+++.+...+ ..+....+.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 34444444445555555555554443 2333344444444443
No 257
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.14 E-value=0.1 Score=31.57 Aligned_cols=33 Identities=36% Similarity=0.318 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 006388 445 IGWATLLSSCRIHGNVEIGKWAAESLLELDPYN 477 (647)
Q Consensus 445 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 477 (647)
..|..+...+...|++++|+..++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356677777788888888888888888887754
No 258
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.11 E-value=0.84 Score=43.77 Aligned_cols=84 Identities=13% Similarity=0.058 Sum_probs=35.7
Q ss_pred CCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHh---CCCCchhhHHHHHHHHHhcCChHH
Q 006388 19 HGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKF---GFGSYVFVGSPLVDMYAKLGLIYD 95 (647)
Q Consensus 19 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~~~~~g~~~~ 95 (647)
+|++.+|-..++++++.- |.|..++...=.+|...|+...-+..+++++.. ++|-..++...+.-++..+|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d~--PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDY--PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHhC--chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 344444444444444433 444444444444555555544444444444432 111122222223333334455555
Q ss_pred HHHHhccCC
Q 006388 96 AKRGFDELP 104 (647)
Q Consensus 96 A~~~~~~~~ 104 (647)
|++.-++..
T Consensus 194 AEk~A~ral 202 (491)
T KOG2610|consen 194 AEKQADRAL 202 (491)
T ss_pred HHHHHHhhc
Confidence 554444443
No 259
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.08 E-value=1.4 Score=45.64 Aligned_cols=132 Identities=10% Similarity=0.072 Sum_probs=79.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHhccCCCCCchHHHHHHHHHHhcCChHHHHHHhhcCCCCCeehHHHHHHHHHhCCChhH
Q 006388 78 FVGSPLVDMYAKLGLIYDAKRGFDELPEKNIVMYNTMITGLLRRGLVEESRRLFRGMKDKDSISWTTMITGLMQNGLERE 157 (647)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 157 (647)
...+.++..+-+.|.++.|.++-..- ..-.....++|+++.|.++-++.. +...|..|.....+.|+++-
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~--------~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~l 365 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDP--------DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIEL 365 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-H--------HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCCh--------HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHH
Confidence 34667777777777777777665432 233445566777777777776655 55578888888888888888
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 006388 158 AIDLFREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRT 234 (647)
Q Consensus 158 A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 234 (647)
|.+.|.+... |..++-.+.-.|+.+.-.++.......|- +|.-..++.-.|++++..+++.+
T Consensus 366 Ae~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 366 AEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888877543 45555556666776666666666655541 23344444455666666655544
No 260
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.94 E-value=2.9 Score=35.60 Aligned_cols=45 Identities=4% Similarity=0.024 Sum_probs=23.4
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhC
Q 006388 8 SWNLLISGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSS 54 (647)
Q Consensus 8 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~ 54 (647)
.-..++..+.+.+.+.....+++.+...+ +.+...++.++..+++
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~ 53 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAK 53 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHH
Confidence 34455555555555555555555555544 3344445555555543
No 261
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.61 E-value=16 Score=41.63 Aligned_cols=92 Identities=17% Similarity=0.247 Sum_probs=53.1
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHhccCChHHH
Q 006388 217 DMYCKCKSIKYAESVFRTMAWKNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFT--LGSVISSCANLASLEEG 294 (647)
Q Consensus 217 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~a~~~~~~~~~a 294 (647)
-+|.++|+.++|.+ +|..+|+|.+|+.+-.+|... -|... -..|..-+...++.-+|
T Consensus 960 l~Ye~~GklekAl~------------------a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eA 1018 (1265)
T KOG1920|consen 960 LMYERCGKLEKALK------------------AYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEA 1018 (1265)
T ss_pred HHHHHhccHHHHHH------------------HHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhH
Confidence 45667777777665 455678888888887766421 12221 13455555566666666
Q ss_pred HHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 006388 295 TQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMN 337 (647)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 337 (647)
-++..+.... ..-.+..|++...+++|.++-....
T Consensus 1019 a~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1019 AKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 5555444322 1234555667777777776655544
No 262
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.46 E-value=14 Score=40.51 Aligned_cols=75 Identities=12% Similarity=0.000 Sum_probs=39.9
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 006388 214 ALVDMYCKCKSIKYAESVFRTMAWKNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLAS 290 (647)
Q Consensus 214 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 290 (647)
.-+..+.+.++++.... |..-+..+...-.....+....|+.++|......+-..| .........++..+.+.|.
T Consensus 104 ~~l~~La~~~~w~~~~~-~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~ 178 (644)
T PRK11619 104 RFVNELARREDWRGLLA-FSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGK 178 (644)
T ss_pred HHHHHHHHccCHHHHHH-hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCC
Confidence 33444555666666666 332223355555556666777777766766666665544 2233344455555444433
No 263
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.26 E-value=0.87 Score=42.57 Aligned_cols=98 Identities=13% Similarity=0.136 Sum_probs=75.0
Q ss_pred HHHHHhcCC--CCChhHHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-----------
Q 006388 228 AESVFRTMA--WKNVVSWTAMLVGYGQN-----GCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLA----------- 289 (647)
Q Consensus 228 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~----------- 289 (647)
.++.|.... ++|-.+|-+++..|... +..+=....++.|.+-|+.-|..+|..+|+.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 455666666 56788888888877654 566667777889999999999999999998875432
Q ss_pred -----ChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCC
Q 006388 290 -----SLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGN 325 (647)
Q Consensus 290 -----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 325 (647)
+-+.+..++++|...|+-||-.+-..|++++++.+-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 335577888888888888888888888888877665
No 264
>PRK15331 chaperone protein SicA; Provisional
Probab=93.15 E-value=0.4 Score=41.37 Aligned_cols=84 Identities=7% Similarity=-0.117 Sum_probs=49.2
Q ss_pred HhCCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC---CCCchHHHHHHHHHHhcCChHHHH
Q 006388 52 SSSRRCVDLGRQIHGHILKFGFGSYVFVGSPLVDMYAKLGLIYDAKRGFDELP---EKNIVMYNTMITGLLRRGLVEESR 128 (647)
Q Consensus 52 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 128 (647)
+-..|++++|..+|..+...+ +.+...+..|..++-..+++++|...|.... ..|....-.....|...|+.+.|+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence 445666666666666666555 2344445566666666666666666654322 234444555556666666667776
Q ss_pred HHhhcCCC
Q 006388 129 RLFRGMKD 136 (647)
Q Consensus 129 ~~~~~~~~ 136 (647)
..|+...+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 66666554
No 265
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.15 E-value=0.72 Score=37.72 Aligned_cols=88 Identities=18% Similarity=0.099 Sum_probs=43.8
Q ss_pred HhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC--hhhHHHHHHHHHhcCC
Q 006388 386 CSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM----PFPPD--AIGWATLLSSCRIHGN 459 (647)
Q Consensus 386 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~--~~~~~~ll~~~~~~~~ 459 (647)
.+..|+.+.|++.|..... -.+-....||.-..+|--.|+.++|++-+++. +-+.. -..|-.-...|+..|+
T Consensus 53 laE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3445555555555555442 22234455555555555555555555555544 11100 1122233334566666
Q ss_pred hhHHHHHHHHHhccCC
Q 006388 460 VEIGKWAAESLLELDP 475 (647)
Q Consensus 460 ~~~a~~~~~~~~~~~p 475 (647)
.+.|..-|+.+-+++.
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 6666666666655553
No 266
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.04 E-value=7.8 Score=36.25 Aligned_cols=58 Identities=16% Similarity=0.123 Sum_probs=39.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCc---hhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 449 TLLSSCRIHGNVEIGKWAAESLLELDPYNP---ASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 449 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
.+..-|.+.|.+..|..-++.+++.-|+.+ ..+..|..+|.+.|..++|.+.-+-+..
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 344557777777778777888777766543 3455566778888888888777665544
No 267
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.91 E-value=8.1 Score=36.12 Aligned_cols=170 Identities=18% Similarity=0.157 Sum_probs=107.5
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCH--HH
Q 006388 308 SFITVSNALVTFYGKCGNIEDSHRLFNEMNVR------DEVSWTALVSGYAKFGKANETIDLFEKMLSH-GLKPDE--VT 378 (647)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~--~t 378 (647)
|-...|+.-+. -.+.|++++|.+.|+.+... ...+--.++-++-+.+++++|+..+++.... +-.||. ..
T Consensus 33 p~~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 33 PASELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 44455554444 34679999999999998743 2334455667788899999999999998874 333443 24
Q ss_pred HHHHHHHHhcCC----c---HHHHHHHHHHHHHhcCCC---cChHHH------------HHHHHHHHHcCCHHHHHHHHH
Q 006388 379 LIGVLSACSRAG----L---VEKGRHYFEIMVKEYGIR---PIHDHY------------TCMIDILSRAGRLEEAKSFIN 436 (647)
Q Consensus 379 ~~~ll~a~~~~g----~---~~~a~~~~~~~~~~~~~~---p~~~~~------------~~li~~~~~~g~~~~A~~~~~ 436 (647)
|...+.-+.... + ..+|..-|+..+.++.-. ||...- -.+..-|.+.|.+..|..-++
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~ 191 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFE 191 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 444444333222 2 345566666666654322 222211 123456788899888888877
Q ss_pred hC-CCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 006388 437 KM-PFPPD----AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNP 478 (647)
Q Consensus 437 ~~-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 478 (647)
+| ..-|+ ...+-.+..+|...|-.++|....+-+....|+++
T Consensus 192 ~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 192 EVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 77 11122 44566777889999999999988766655566543
No 268
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.84 E-value=0.2 Score=32.71 Aligned_cols=39 Identities=13% Similarity=0.182 Sum_probs=29.3
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHH
Q 006388 8 SWNLLISGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTM 48 (647)
Q Consensus 8 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~l 48 (647)
+|..+..+|.+.|++++|.++|++..+.. |.|...+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~--P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD--PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCCHHHHHHh
Confidence 57778888888888888888888888875 5555555544
No 269
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.80 E-value=7.5 Score=37.12 Aligned_cols=142 Identities=15% Similarity=0.138 Sum_probs=82.5
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHH
Q 006388 350 GYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLE 429 (647)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 429 (647)
.....|+..+|..+|+...... .-+...-..+..++...|+++.|..++..+-.+ .-.........-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcCC
Confidence 4556777777888777777642 222345556667777788888888777765322 00111111223445555555555
Q ss_pred HHHHHHHhCCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccC--CCCchhHHHHHHhhhhCCC
Q 006388 430 EAKSFINKMPFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELD--PYNPASYVLLSSIYASKGK 493 (647)
Q Consensus 430 ~A~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~ 493 (647)
+...+-.+..-.| |...-..|...+...|+.+.|...+=.+++.+ -.|...-..|+.++..-|.
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 5555555553345 45555566667777788877777666655543 3355666666666666653
No 270
>PRK09687 putative lyase; Provisional
Probab=92.58 E-value=11 Score=36.66 Aligned_cols=74 Identities=7% Similarity=0.057 Sum_probs=37.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 006388 309 FITVSNALVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACS 387 (647)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 387 (647)
+..+-...+.++++.|+......+.+.+..++ ..-..+.++...|.. +|+..+.++.+. .||...-...+.+|.
T Consensus 205 ~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 44444555555556555333333333333333 223456666666664 577777776653 345555544454443
No 271
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.43 E-value=13 Score=37.40 Aligned_cols=148 Identities=11% Similarity=-0.016 Sum_probs=73.4
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh-cCCCcChHHH
Q 006388 340 DEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKP---DEVTLIGVLSACSRAGLVEKGRHYFEIMVKE-YGIRPIHDHY 415 (647)
Q Consensus 340 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~~~~~ 415 (647)
...+|..+...+.+.|+++.|...+.++...+..+ .......-+...-..|+..+|...++...+. ..-..+....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 44567777788888888888888888777643211 2223333344455567777777777766652 1101011111
Q ss_pred HHHHHHHHHcCCHHHHHHH-HHhCCCCCChhhHHHHHHHHHhc------CChhHHHHHHHHHhccCCCCchhHHHHHHhh
Q 006388 416 TCMIDILSRAGRLEEAKSF-INKMPFPPDAIGWATLLSSCRIH------GNVEIGKWAAESLLELDPYNPASYVLLSSIY 488 (647)
Q Consensus 416 ~~li~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~ll~~~~~~------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 488 (647)
..+...+.. ..+..... ........-...+..+..-+... ++.+.+...++.+.++.|.....+..++..+
T Consensus 225 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 111100000 00000000 00000000012233333333333 7788888999999999998777777766655
Q ss_pred h
Q 006388 489 A 489 (647)
Q Consensus 489 ~ 489 (647)
.
T Consensus 303 ~ 303 (352)
T PF02259_consen 303 D 303 (352)
T ss_pred H
Confidence 3
No 272
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.29 E-value=7.4 Score=41.00 Aligned_cols=159 Identities=16% Similarity=0.103 Sum_probs=99.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHh----cCCcHHHHHHHHHHHHHhcCCCcChHH
Q 006388 345 TALVSGYAKFGKANETIDLFEKMLSHG-LKPDE-----VTLIGVLSACS----RAGLVEKGRHYFEIMVKEYGIRPIHDH 414 (647)
Q Consensus 345 ~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~t~~~ll~a~~----~~g~~~~a~~~~~~~~~~~~~~p~~~~ 414 (647)
..+++...-.|+-+.+++++.+-.+.+ +.-.. .+|..++..+. .....+.+.++++.+.+.| |+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcHH
Confidence 334444455566666666666654422 11111 12333333222 2457788999999888653 55544
Q ss_pred HH-HHHHHHHHcCCHHHHHHHHHhCCC------CCChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHH-HHHH
Q 006388 415 YT-CMIDILSRAGRLEEAKSFINKMPF------PPDAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYV-LLSS 486 (647)
Q Consensus 415 ~~-~li~~~~~~g~~~~A~~~~~~~~~------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~-~l~~ 486 (647)
|. --...+...|++++|.+.|+++-. +-....+--+...+....++++|...+.++.+.+.-....|. ..+-
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 43 334566778999999999987521 112344555666778889999999999999887654444444 4455
Q ss_pred hhhhCCCh-------hHHHHHHHHHHh
Q 006388 487 IYASKGKW-------DHVSQLRRTMRE 506 (647)
Q Consensus 487 ~~~~~g~~-------~~a~~~~~~m~~ 506 (647)
.|...|+. ++|.+++++...
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 56778888 888888887654
No 273
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.72 E-value=8.5 Score=42.00 Aligned_cols=51 Identities=14% Similarity=0.208 Sum_probs=22.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHH
Q 006388 348 VSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYF 399 (647)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 399 (647)
|.-|....+..+-..+++.+.+.|+.-.. .-+.|+.+|.+.++.++-.++.
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gla~~d-httlLLncYiKlkd~~kL~efI 454 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGLANSD-HTTLLLNCYIKLKDVEKLTEFI 454 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcccccch-hHHHHHHHHHHhcchHHHHHHH
Confidence 33344444444444455555555433222 2234445555555555544443
No 274
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.55 E-value=0.3 Score=30.15 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=20.6
Q ss_pred hHHHHHHhhhhCCChhHHHHHHHHHH
Q 006388 480 SYVLLSSIYASKGKWDHVSQLRRTMR 505 (647)
Q Consensus 480 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 505 (647)
+|..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778899999999999999988854
No 275
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.54 E-value=21 Score=37.71 Aligned_cols=158 Identities=11% Similarity=0.049 Sum_probs=95.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCCh-----hhHHHHHHHHhc----CCChHHHHHHHHHHHHcCCCCchhH
Q 006388 142 WTTMITGLMQNGLEREAIDLFREMRLEG-LAMDQ-----FTFGSVLTACGG----LLALEEGKQIHAFIIRNDHKDNVFV 211 (647)
Q Consensus 142 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~-----~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~ 211 (647)
...++....-.|+-+.+++++.+-.+.+ +.-.. .+|..++..+.. ..+.+.+.+++..+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 3344445555688888888887765432 22111 123333333332 45677888888888776 345444
Q ss_pred HH-HHHHHHHhcCCHHHHHHHHhcCCCC-------ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006388 212 GS-ALVDMYCKCKSIKYAESVFRTMAWK-------NVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVIS 283 (647)
Q Consensus 212 ~~-~li~~y~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 283 (647)
|. .-.+.+...|++++|.+.|++.... ....+--+.-.+.-.++|++|.+.|..+.+.. .....+|..+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 43 3356777888999999999865431 22334445556777888999999998888753 344555555554
Q ss_pred HH-hccCCh-------HHHHHHHHHHH
Q 006388 284 SC-ANLASL-------EEGTQFHGRSL 302 (647)
Q Consensus 284 a~-~~~~~~-------~~a~~~~~~~~ 302 (647)
+| ...++. ++|.+++.++.
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 44 334555 66666666553
No 276
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.50 E-value=0.88 Score=40.29 Aligned_cols=88 Identities=17% Similarity=0.161 Sum_probs=69.1
Q ss_pred HHHHHcCCHHHHHHHHHhC----CCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCC
Q 006388 420 DILSRAGRLEEAKSFINKM----PFPP---DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKG 492 (647)
Q Consensus 420 ~~~~~~g~~~~A~~~~~~~----~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 492 (647)
.-+.+.|++++|..-|..+ |-.+ ..+.|..-..+..+.+..+.|+....++++++|.+..+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3455778888888777665 2111 14455555667788899999999999999999988888888899999999
Q ss_pred ChhHHHHHHHHHHhC
Q 006388 493 KWDHVSQLRRTMREK 507 (647)
Q Consensus 493 ~~~~a~~~~~~m~~~ 507 (647)
++++|.+-++++.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 999999999998774
No 277
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.08 E-value=0.91 Score=43.28 Aligned_cols=62 Identities=23% Similarity=0.351 Sum_probs=51.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 445 IGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 445 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
.++..++..+...|+++.+...++++++.+|-+...|..+..+|.+.|+...|...++.+.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34556677777778888888888888888888888888888888888988888888887765
No 278
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.97 E-value=0.43 Score=40.95 Aligned_cols=84 Identities=12% Similarity=0.049 Sum_probs=44.3
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCchHHHHHHHHHHhcCChHHH
Q 006388 48 MLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSPLVDMYAKLGLIYDAKRGFDELPEKNIVMYNTMITGLLRRGLVEES 127 (647)
Q Consensus 48 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 127 (647)
+++.+.+.+.......+++.+.+.+...+....+.|+..|++.++.+...+.++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 3444555555566666666666555445566666777777776666666666653332 2223444444444555454
Q ss_pred HHHhhcC
Q 006388 128 RRLFRGM 134 (647)
Q Consensus 128 ~~~~~~~ 134 (647)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 4444443
No 279
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.85 E-value=14 Score=34.58 Aligned_cols=229 Identities=17% Similarity=0.236 Sum_probs=132.3
Q ss_pred CHHHHHHHHhcCCC----C---ChhHHHHHHHHHHhcCChhHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHhccCCh
Q 006388 224 SIKYAESVFRTMAW----K---NVVSWTAMLVGYGQNGCSEEAVKIFCNMQRN---GI--EPDDFTLGSVISSCANLASL 291 (647)
Q Consensus 224 ~~~~A~~~~~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~--~p~~~t~~~ll~a~~~~~~~ 291 (647)
..++|..-|+++.+ + .-.+.-.||..+.+.|++++.+..|.+|..- .+ .-+.-+.++++.-.+...+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 45556655555432 1 2234455677777788888877777777431 11 22345667777666666666
Q ss_pred HHHHHHHHHHHHh-----CCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC--------C-------hhhHHHHHHHH
Q 006388 292 EEGTQFHGRSLVT-----GLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVR--------D-------EVSWTALVSGY 351 (647)
Q Consensus 292 ~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------d-------~~~~~~li~~~ 351 (647)
+.-..+++.-.+. +-...-.+-+.|...|...|++.+..+++.++... | ...|..-|..|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 5555555443321 11223334456777888888888888887776411 1 23566667888
Q ss_pred HHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHh-----cCCcHHHHHHHHHHHHHhcCCCcCh-----HHHHHHHH
Q 006388 352 AKFGKANETIDLFEKMLSHG-LKPDEVTLIGVLSACS-----RAGLVEKGRHYFEIMVKEYGIRPIH-----DHYTCMID 420 (647)
Q Consensus 352 ~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~ 420 (647)
....+-.....+|++..... .-|.+ ....+++-|. +.|.+++|..-|=+..+.|.-..++ --|-.|..
T Consensus 202 T~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLAN 280 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLAN 280 (440)
T ss_pred hhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHH
Confidence 88888888888888776532 23433 3445666664 5678888765444444444332222 33556667
Q ss_pred HHHHcCC----HHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 006388 421 ILSRAGR----LEEAKSFINKMPFPPDAIGWATLLSSCRIH 457 (647)
Q Consensus 421 ~~~~~g~----~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 457 (647)
++.++|- -+||. -....|.......|+.+|..+
T Consensus 281 MLmkS~iNPFDsQEAK----PyKNdPEIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 281 MLMKSGINPFDSQEAK----PYKNDPEILAMTNLVAAYQNN 317 (440)
T ss_pred HHHHcCCCCCcccccC----CCCCCHHHHHHHHHHHHHhcc
Confidence 7777662 11211 012345566778888888654
No 280
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.85 E-value=8.9 Score=33.57 Aligned_cols=58 Identities=17% Similarity=0.149 Sum_probs=33.5
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 006388 141 SWTTMITGLMQNGLEREAIDLFREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIR 202 (647)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 202 (647)
.+..++..+...|++-+|+++.+..... +...-..++.+..+.+|...-..++....+
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556667777777887777777664221 223334556666666655555555554444
No 281
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.27 E-value=19 Score=35.01 Aligned_cols=17 Identities=12% Similarity=-0.306 Sum_probs=10.9
Q ss_pred HHhcCChhHHHHHHHHH
Q 006388 454 CRIHGNVEIGKWAAESL 470 (647)
Q Consensus 454 ~~~~~~~~~a~~~~~~~ 470 (647)
+.+.++++.|...++-.
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 45567777777766643
No 282
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.26 E-value=0.42 Score=28.86 Aligned_cols=31 Identities=26% Similarity=0.176 Sum_probs=21.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 006388 446 GWATLLSSCRIHGNVEIGKWAAESLLELDPY 476 (647)
Q Consensus 446 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 476 (647)
+|..+...+...|++++|...+++.++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4566666777777777777777777777663
No 283
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.23 E-value=2.2 Score=40.79 Aligned_cols=76 Identities=16% Similarity=0.230 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 006388 310 ITVSNALVTFYGKCGNIEDSHRLFNEMNVR---DEVSWTALVSGYAKFGKANETIDLFEKMLS-----HGLKPDEVTLIG 381 (647)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---d~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 381 (647)
..++..++..+..+|+.+.+.+.++++... |...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345677888899999999999999888733 677899999999999999999999998865 467776665555
Q ss_pred HHHH
Q 006388 382 VLSA 385 (647)
Q Consensus 382 ll~a 385 (647)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
No 284
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.00 E-value=23 Score=35.65 Aligned_cols=67 Identities=19% Similarity=0.308 Sum_probs=56.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCC----CCchhHHHHHHhhhhCCChhHHHHHHHHHHhCCC
Q 006388 443 DAIGWATLLSSCRIHGNVEIGKWAAESLLELDP----YNPASYVLLSSIYASKGKWDHVSQLRRTMREKGV 509 (647)
Q Consensus 443 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 509 (647)
...+|..+...++++|+++.|...+.++....+ ..+.....-+......|+-++|...++...+..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999888652 2466777788999999999999999988877333
No 285
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.51 E-value=13 Score=32.14 Aligned_cols=89 Identities=16% Similarity=0.105 Sum_probs=51.4
Q ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCcCh-HHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCChh
Q 006388 384 SACSRAGLVEKGRHYFEIMVKEYGIRPIH-DHYTCMIDILSRAGRLEEAKSFINKMP-FPPDAIGWATLLSSCRIHGNVE 461 (647)
Q Consensus 384 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~ 461 (647)
..-.+.++.+++..+++.+. -+.|.. +.-..-...+.+.|++.+|..+|+++. -.|....-.+|+..|.....-.
T Consensus 18 ~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 33445667777777777664 334432 222223344667888888888888873 3344445556666666554444
Q ss_pred HHHHHHHHHhccCC
Q 006388 462 IGKWAAESLLELDP 475 (647)
Q Consensus 462 ~a~~~~~~~~~~~p 475 (647)
.=....+++++..+
T Consensus 95 ~Wr~~A~evle~~~ 108 (160)
T PF09613_consen 95 SWRRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHHHhcCC
Confidence 44555555666555
No 286
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.32 E-value=13 Score=32.52 Aligned_cols=134 Identities=13% Similarity=0.101 Sum_probs=86.7
Q ss_pred HHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCc-hhhHHHHHHHHHhcCChHHHHHHhccCC
Q 006388 26 VKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSY-VFVGSPLVDMYAKLGLIYDAKRGFDELP 104 (647)
Q Consensus 26 ~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~ 104 (647)
++.++.+.+.++ +|+...+..+++.+.+.|.+....+ ++..++-+| ..+...|++.- +....+.++=-.|.
T Consensus 14 lEYirSl~~~~i-~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~---~~~~~~~Ql~lDML 85 (167)
T PF07035_consen 14 LEYIRSLNQHNI-PVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLG---NQYPPAYQLGLDML 85 (167)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhH---ccChHHHHHHHHHH
Confidence 455666777888 8999999999999999998665444 444444444 44444443332 22233333333333
Q ss_pred CCCchHHHHHHHHHHhcCChHHHHHHhhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHH
Q 006388 105 EKNIVMYNTMITGLLRRGLVEESRRLFRGMKDKDSISWTTMITGLMQNGLEREAIDLFREMRL 167 (647)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 167 (647)
.+=...+..++..+...|++-+|.++.+....-+...-..++.+..+.++...=..+|+-..+
T Consensus 86 kRL~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 86 KRLGTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 322235667788899999999999999887665556667777777777776655555555444
No 287
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=89.30 E-value=38 Score=37.23 Aligned_cols=23 Identities=22% Similarity=0.511 Sum_probs=16.6
Q ss_pred HHHHhhhhCCChhHHHHHHHHHH
Q 006388 483 LLSSIYASKGKWDHVSQLRRTMR 505 (647)
Q Consensus 483 ~l~~~~~~~g~~~~a~~~~~~m~ 505 (647)
.+.+.|...|+.++|.....+..
T Consensus 582 ~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 582 MLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHH
Confidence 44555777888888888877653
No 288
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.14 E-value=0.56 Score=28.95 Aligned_cols=28 Identities=25% Similarity=0.128 Sum_probs=20.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 006388 446 GWATLLSSCRIHGNVEIGKWAAESLLEL 473 (647)
Q Consensus 446 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 473 (647)
+|..|...|...|++++|+.++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4667778888888888888888885543
No 289
>PRK09687 putative lyase; Provisional
Probab=88.55 E-value=25 Score=34.12 Aligned_cols=80 Identities=11% Similarity=0.041 Sum_probs=35.8
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCh----hHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006388 207 DNVFVGSALVDMYCKCKSIKYAESVFRTMAWKNVVSWTAMLVGYGQNGCS----EEAVKIFCNMQRNGIEPDDFTLGSVI 282 (647)
Q Consensus 207 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll 282 (647)
+|..+....+..+...|..+-...+..-+..+|...-...+.++.+.|+. .+++..+..+... .|+...-...+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~ 112 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAI 112 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 34444444444455444432222222222334444444455555555543 3455555555332 34444444444
Q ss_pred HHHhcc
Q 006388 283 SSCANL 288 (647)
Q Consensus 283 ~a~~~~ 288 (647)
.++...
T Consensus 113 ~aLG~~ 118 (280)
T PRK09687 113 NATGHR 118 (280)
T ss_pred HHHhcc
Confidence 444433
No 290
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.44 E-value=11 Score=36.76 Aligned_cols=62 Identities=16% Similarity=0.230 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhcCCc--HHHHHHHHHHHHHhcCCCcChHHHHHHHH
Q 006388 358 NETIDLFEKMLSHGLKPDEV--TLIGVLSACSRAGL--VEKGRHYFEIMVKEYGIRPIHDHYTCMID 420 (647)
Q Consensus 358 ~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 420 (647)
+.+..+|+.+.+.|+..+.. ....+|..+..... +.++.++++.+.+. ++++...+|..+.-
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGl 225 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHH
Confidence 56777888888878766543 34444444333222 44778888888765 88888888776553
No 291
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=88.20 E-value=14 Score=30.70 Aligned_cols=63 Identities=11% Similarity=0.202 Sum_probs=39.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC
Q 006388 344 WTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGI 408 (647)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 408 (647)
.+..+..+...|+-+.-.+++.++.+. -.|++.....+..||.+.|+..++.+++....+. |+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 344566677777777777777776642 3667777777778888888888888777777654 54
No 292
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=88.05 E-value=81 Score=39.41 Aligned_cols=64 Identities=13% Similarity=0.099 Sum_probs=55.7
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhCCC
Q 006388 444 AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREKGV 509 (647)
Q Consensus 444 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 509 (647)
..+|......++..|.++.|....-++.+..+ +..+.-.+......|+-..|..++++-.+...
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 67899999999999999999999888877774 57889999999999999999999998876544
No 293
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.03 E-value=21 Score=32.53 Aligned_cols=163 Identities=15% Similarity=0.141 Sum_probs=92.2
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHH
Q 006388 340 DEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMI 419 (647)
Q Consensus 340 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 419 (647)
-+..||-+.--+...|+++.|.+.|+...+....-+-...+. .-++--.|++.-|.+-|...-..-.-.|-...|-.+
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR-gi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl- 175 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR-GIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYL- 175 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc-ceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHH-
Confidence 356778787778888888888888888877532222222222 223445677877776555443321222322333222
Q ss_pred HHHHHcCCHHHHHHHH-HhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-------chhHHHHHHhhhhC
Q 006388 420 DILSRAGRLEEAKSFI-NKMPFPPDAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYN-------PASYVLLSSIYASK 491 (647)
Q Consensus 420 ~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~ 491 (647)
-.+.-+..+|..-+ ++.. .-|..-|+.-+-.+.- |+.. -+.+++++.+...++ ..+|.-|+.-|...
T Consensus 176 --~E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 176 --NEQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred --HHhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 23445666666544 3332 2355556655554432 2111 122333333332222 36788899999999
Q ss_pred CChhHHHHHHHHHHhCCC
Q 006388 492 GKWDHVSQLRRTMREKGV 509 (647)
Q Consensus 492 g~~~~a~~~~~~m~~~g~ 509 (647)
|+.++|..+|+......+
T Consensus 251 G~~~~A~~LfKLaiannV 268 (297)
T COG4785 251 GDLDEATALFKLAVANNV 268 (297)
T ss_pred ccHHHHHHHHHHHHHHhH
Confidence 999999999998766443
No 294
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=87.97 E-value=9.8 Score=38.65 Aligned_cols=104 Identities=13% Similarity=0.112 Sum_probs=48.7
Q ss_pred HHHcCCHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHH
Q 006388 422 LSRAGRLEEAKSFINKMP--FPPDAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQ 499 (647)
Q Consensus 422 ~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 499 (647)
....|+++.+...+.... +.....+...++......|+.++|....+.++..+-+++.....-+..-...|-+|++.-
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~ 412 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYH 412 (831)
T ss_pred HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHH
Confidence 344555555555554441 122334445555555555555555555555555444444443333333344455555555
Q ss_pred HHHHHHhCCCccCCCcceEeEcCeEEEE
Q 006388 500 LRRTMREKGVRKDPGCSWIKYKSRVHIF 527 (647)
Q Consensus 500 ~~~~m~~~g~~~~~~~s~~~~~~~~~~f 527 (647)
.++++..- .|.....|+.+-.....|
T Consensus 413 ~wk~~~~~--~~~~~~g~v~~~~~~~~~ 438 (831)
T PRK15180 413 YWKRVLLL--NPETQSGWVNFLSSTQYF 438 (831)
T ss_pred HHHHHhcc--CChhcccceeeeccceec
Confidence 55555442 222233355444444444
No 295
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.26 E-value=11 Score=33.58 Aligned_cols=93 Identities=14% Similarity=0.116 Sum_probs=45.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC--CcC----hHHH
Q 006388 344 WTALVSGYAKFGKANETIDLFEKMLSHGLKPDEV--TLIGVLSACSRAGLVEKGRHYFEIMVKEYGI--RPI----HDHY 415 (647)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~----~~~~ 415 (647)
+..+..-|.+.|+.++|++.|.++.+....|... .+..++..+...+++..+............- +++ ...|
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~ 118 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY 118 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 4444555555555555555555555544344333 3344455555555555555554444321111 111 1223
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC
Q 006388 416 TCMIDILSRAGRLEEAKSFINKM 438 (647)
Q Consensus 416 ~~li~~~~~~g~~~~A~~~~~~~ 438 (647)
..|. +...|++.+|.+.|-..
T Consensus 119 ~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 119 EGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHH--HHHhchHHHHHHHHHcc
Confidence 3332 23467888888887776
No 296
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=86.86 E-value=33 Score=33.59 Aligned_cols=134 Identities=10% Similarity=0.157 Sum_probs=66.9
Q ss_pred hhHHHHHHHHHHHCCCCCChhhHHHHHHHHhc--CC----ChHHHHHHHHHHHHcCC---CCchhHHHHHHHHHHhcCCH
Q 006388 155 EREAIDLFREMRLEGLAMDQFTFGSVLTACGG--LL----ALEEGKQIHAFIIRNDH---KDNVFVGSALVDMYCKCKSI 225 (647)
Q Consensus 155 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~--~~----~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~y~~~g~~ 225 (647)
+++.+.+++.|.+.|++-+..+|.+..-.... .. ....+..+|+.|.+.-. .++..++..|+.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34566777888888888777777654333222 11 23345555555555431 1222222222211 11111
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCC--hHHHHHHHHHH
Q 006388 226 KYAESVFRTMAWKNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDD--FTLGSVISSCANLAS--LEEGTQFHGRS 301 (647)
Q Consensus 226 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~--~~~a~~~~~~~ 301 (647)
+. -.+.+...|+.+.+.|+..+. ...+.++..+..... ...+..++..+
T Consensus 156 e~---------------------------l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l 208 (297)
T PF13170_consen 156 EE---------------------------LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNAL 208 (297)
T ss_pred HH---------------------------HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 10 124456666777776665533 334444443333222 33566677777
Q ss_pred HHhCCCcchhHHHHHH
Q 006388 302 LVTGLISFITVSNALV 317 (647)
Q Consensus 302 ~~~~~~~~~~~~~~li 317 (647)
.+.|++.....|..+.
T Consensus 209 ~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 209 KKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHcCCccccccccHHH
Confidence 7777776665555443
No 297
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.48 E-value=3.7 Score=35.45 Aligned_cols=51 Identities=22% Similarity=0.307 Sum_probs=28.6
Q ss_pred hcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 456 IHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 456 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
.+++.+.++.++.-+.-+.|..+..-..-++.+...|+|++|.++++.+.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 344555555555555555555555555555555555555555555555543
No 298
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=86.41 E-value=1.4 Score=42.32 Aligned_cols=111 Identities=13% Similarity=0.068 Sum_probs=76.1
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHhcCCCc-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcC
Q 006388 382 VLSACSRAGLVEKGRHYFEIMVKEYGIRP-IHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHG 458 (647)
Q Consensus 382 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~ 458 (647)
-..-|.++|.+++|+..|...+ .+.| ++..+..-..+|.+..++..|..-...+ .+.. -.-.|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3556889999999999998765 4456 7788888888999998888777655544 1111 1334555555556678
Q ss_pred ChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHH
Q 006388 459 NVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQ 499 (647)
Q Consensus 459 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 499 (647)
+..+|.+-++..++++|.+-. |-..|+......++.-
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~I 216 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIE----LKKSLARINSLRERKI 216 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhhH
Confidence 899999999999999997533 3334444444444433
No 299
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=85.58 E-value=4.4 Score=27.64 Aligned_cols=27 Identities=11% Similarity=0.129 Sum_probs=22.5
Q ss_pred hHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 480 SYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 480 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
....++-++.+.|++++|.+..+.+.+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 345678889999999999999999877
No 300
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=85.56 E-value=39 Score=33.32 Aligned_cols=127 Identities=17% Similarity=0.129 Sum_probs=73.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHhcCCcHHHHHHHHHHH---HHhcCCCcChHHHHH
Q 006388 346 ALVSGYAKFGKANETIDLFEKMLSHGLK-----PDEVTLIGVLSACSRAGLVEKGRHYFEIM---VKEYGIRPIHDHYTC 417 (647)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~t~~~ll~a~~~~g~~~~a~~~~~~~---~~~~~~~p~~~~~~~ 417 (647)
+|..++.-.+.++++++.|+....---. ..-..+..+-+-|.+..++++|.-+.... ...+++..-..-|.+
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 3555566666677777777766542111 11235666667777777777766554432 223343332233333
Q ss_pred H-----HHHHHHcCCHHHHHHHHHhC-------CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHhc
Q 006388 418 M-----IDILSRAGRLEEAKSFINKM-------PFPPD-AIGWATLLSSCRIHGNVEIGKWAAESLLE 472 (647)
Q Consensus 418 l-----i~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 472 (647)
+ .-+|-..|.+-+|.+.-++. +.+|- ......+...|+..|+.+.|..-|+.+..
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 3 23455566665555555443 43332 44566778888899999988888887654
No 301
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.49 E-value=4 Score=34.60 Aligned_cols=54 Identities=11% Similarity=0.116 Sum_probs=39.8
Q ss_pred hcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhCCC
Q 006388 456 IHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREKGV 509 (647)
Q Consensus 456 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 509 (647)
..++.++++.+++.+.-+.|+.+..-..-+..+...|+|++|.++++...+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 366777777777777777777777777777777778888888888777766543
No 302
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.36 E-value=15 Score=32.16 Aligned_cols=30 Identities=17% Similarity=0.196 Sum_probs=15.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 006388 244 TAMLVGYGQNGCSEEAVKIFCNMQRNGIEP 273 (647)
Q Consensus 244 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 273 (647)
.+|.-+-.+.|++.+|.++|.++......|
T Consensus 171 EALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 171 EALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 344444445555555555555555433333
No 303
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.05 E-value=32 Score=31.79 Aligned_cols=62 Identities=11% Similarity=-0.035 Sum_probs=33.7
Q ss_pred HHHHHHHHc-CCHHHHHHHHHhCC-----CCCChhhHHHHHHH---HHhcCChhHHHHHHHHHhccCCCCc
Q 006388 417 CMIDILSRA-GRLEEAKSFINKMP-----FPPDAIGWATLLSS---CRIHGNVEIGKWAAESLLELDPYNP 478 (647)
Q Consensus 417 ~li~~~~~~-g~~~~A~~~~~~~~-----~~p~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~p~~~ 478 (647)
.+.+.|..- .+++.|+..++... -+.+...-..++.. -...+++.+|+.+|+++....-+|+
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 344444433 45566666665551 11222222333332 2456889999999998876554443
No 304
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.99 E-value=6.6 Score=30.43 Aligned_cols=62 Identities=15% Similarity=0.233 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHH
Q 006388 357 ANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMID 420 (647)
Q Consensus 357 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 420 (647)
.-++.+-+..+....+.|+.....+.|.||.+..++..|.++|+....+ ...+...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHHH
Confidence 3456666677777778999999999999999999999999999987643 2334556766654
No 305
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.93 E-value=7.7 Score=37.18 Aligned_cols=97 Identities=13% Similarity=0.173 Sum_probs=69.2
Q ss_pred CCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-C--------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 006388 305 GLISFITVSNALVTFYGKCGNIEDSHRLFNEMNV-R--------DEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPD 375 (647)
Q Consensus 305 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--------d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 375 (647)
|.+....+...++..-....+++++...+-++.. + ...+|-.++. .=++++++.++..=++.|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccc
Confidence 4455555556666666667778888877766652 2 2233333332 3357788888888888999999
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 006388 376 EVTLIGVLSACSRAGLVEKGRHYFEIMVKE 405 (647)
Q Consensus 376 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 405 (647)
..|+..+++.+.+.+++.+|.++...|+..
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999999988887776654
No 306
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=84.49 E-value=2.2 Score=25.63 Aligned_cols=27 Identities=19% Similarity=0.527 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 006388 343 SWTALVSGYAKFGKANETIDLFEKMLS 369 (647)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (647)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 566666677777777777777777665
No 307
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=84.49 E-value=17 Score=32.44 Aligned_cols=57 Identities=14% Similarity=0.022 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCC------hhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006388 211 VGSALVDMYCKCKSIKYAESVFRTMAWKN------VVSWTAMLVGYGQNGCSEEAVKIFCNMQ 267 (647)
Q Consensus 211 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~ 267 (647)
.+..+.+.|.+.|+.+.|.+.|.++.+.. +..+-.+|......+++..+.....+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34556666666666666666666655432 1234455555555556555555555443
No 308
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.49 E-value=7.2 Score=40.83 Aligned_cols=99 Identities=13% Similarity=0.121 Sum_probs=52.0
Q ss_pred HhcCChHHHHHHhhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHH
Q 006388 119 LRRGLVEESRRLFRGMKDKDSISWTTMITGLMQNGLEREAIDLFREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHA 198 (647)
Q Consensus 119 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~ 198 (647)
.+.|+++.|.++..+. .+..-|..|-.+..+.|++..|.+.|..... |..|+-.+...|+-+....+-.
T Consensus 648 l~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~ 716 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLAS 716 (794)
T ss_pred hhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHH
Confidence 3456666666555442 2455577777777777777777777665543 4445555555555554444444
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 006388 199 FIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRT 234 (647)
Q Consensus 199 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 234 (647)
...+.|.. |.-.-+|...|+++++.+++.+
T Consensus 717 ~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 717 LAKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 44444311 2222334455555555555443
No 309
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=84.41 E-value=4.2 Score=36.73 Aligned_cols=90 Identities=18% Similarity=0.254 Sum_probs=39.6
Q ss_pred HhcCCcHHHHHHHHHHHHHhcCCCcC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCChhH
Q 006388 386 CSRAGLVEKGRHYFEIMVKEYGIRPI-HDHYTCMIDILSRAGRLEEAKSFINKM-PFPPD-AIGWATLLSSCRIHGNVEI 462 (647)
Q Consensus 386 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~ 462 (647)
|-..|..+-|+-=|.... .+.|+ +.+||.|.--+...|+++.|.+.|+.. ...|. ..+...-.-++---|++..
T Consensus 75 YDSlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~L 151 (297)
T COG4785 75 YDSLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKL 151 (297)
T ss_pred hhhhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHh
Confidence 334444444544444333 33443 244555555555555555555555544 33332 1111111112223455555
Q ss_pred HHHHHHHHhccCCCCc
Q 006388 463 GKWAAESLLELDPYNP 478 (647)
Q Consensus 463 a~~~~~~~~~~~p~~~ 478 (647)
|.+-+.+.-+.+|+||
T Consensus 152 Aq~d~~~fYQ~D~~DP 167 (297)
T COG4785 152 AQDDLLAFYQDDPNDP 167 (297)
T ss_pred hHHHHHHHHhcCCCCh
Confidence 5555555555555443
No 310
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=84.10 E-value=1.6 Score=26.11 Aligned_cols=28 Identities=14% Similarity=0.290 Sum_probs=24.3
Q ss_pred hhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 479 ASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 479 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
..+..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4678899999999999999999998865
No 311
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.78 E-value=1.3 Score=24.92 Aligned_cols=24 Identities=21% Similarity=0.283 Sum_probs=18.4
Q ss_pred hhHHHHHHhhhhCCChhHHHHHHH
Q 006388 479 ASYVLLSSIYASKGKWDHVSQLRR 502 (647)
Q Consensus 479 ~~~~~l~~~~~~~g~~~~a~~~~~ 502 (647)
.....|+.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456677888888888888887765
No 312
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=83.77 E-value=1.3 Score=26.84 Aligned_cols=24 Identities=17% Similarity=0.104 Sum_probs=14.4
Q ss_pred CCchhhHHHHHHHHHhcCChHHHH
Q 006388 74 GSYVFVGSPLVDMYAKLGLIYDAK 97 (647)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~A~ 97 (647)
|.+...++.|...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445566666666666666666654
No 313
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.94 E-value=1.9 Score=27.22 Aligned_cols=28 Identities=18% Similarity=0.370 Sum_probs=22.8
Q ss_pred hhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 479 ASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 479 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
.++..|+.+|...|++++|.+++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677889999999999999999988764
No 314
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=82.83 E-value=12 Score=31.09 Aligned_cols=64 Identities=14% Similarity=0.040 Sum_probs=36.6
Q ss_pred ChhhHHHHHHHHHhc---CChhHHHHHHHHHhc-cCCC-CchhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 443 DAIGWATLLSSCRIH---GNVEIGKWAAESLLE-LDPY-NPASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 443 ~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~-~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
+..+--.+..++... .+..+++.+++.+.+ -.|. ......-|+-++.+.|+|+.+.++.+.+.+
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 333333444444433 345566777777765 3333 233444566667777777777777777665
No 315
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.48 E-value=11 Score=29.56 Aligned_cols=60 Identities=17% Similarity=0.274 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHH
Q 006388 359 ETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMID 420 (647)
Q Consensus 359 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 420 (647)
+..+-+..+....+.|+.....+.|.||.+..++..|.++|+.+..+-+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4555566666677899999999999999999999999999998876543 33337777664
No 316
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=82.08 E-value=74 Score=33.77 Aligned_cols=141 Identities=9% Similarity=0.043 Sum_probs=102.8
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcc-hHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHHH
Q 006388 5 DGVSWNLLISGHASHGSVNDAVKVYNLMLKDGLGNLSRI-TFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSPL 83 (647)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 83 (647)
+...|++||.---.....+.+...+..++.. -|..+ -|.....--.+.|..+.+..+|++.+. |++.++..+...
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k---yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y 119 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK---YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSY 119 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh---CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHH
Confidence 3457999888777777778888889988865 45544 345555555688899999999999875 466777777776
Q ss_pred HHHHH-hcCChHHHHHHhccCCC------CCchHHHHHHHHHHhcCChHHHHHHhhcCCCCCeehHHHHHHHH
Q 006388 84 VDMYA-KLGLIYDAKRGFDELPE------KNIVMYNTMITGLLRRGLVEESRRLFRGMKDKDSISWTTMITGL 149 (647)
Q Consensus 84 i~~~~-~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 149 (647)
+.... ..|+.+..++.|+...+ .....|...|.--..++++.....+++++.+-....++..-.-|
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f 192 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRF 192 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHH
Confidence 66544 45788888888887764 34567888888888999999999999988875444444444433
No 317
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.03 E-value=43 Score=31.00 Aligned_cols=87 Identities=16% Similarity=0.306 Sum_probs=48.1
Q ss_pred CcHHHHHHHHHHHHHhcCC-CcChHHHHHHH---HHHHHcCCHHHHHHHHHhC---CCCCChhhHHH---HHH-H-HHh-
Q 006388 390 GLVEKGRHYFEIMVKEYGI-RPIHDHYTCMI---DILSRAGRLEEAKSFINKM---PFPPDAIGWAT---LLS-S-CRI- 456 (647)
Q Consensus 390 g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li---~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~---ll~-~-~~~- 456 (647)
.++++|+..|+..-+-|.. ..+...-.|++ +.-+..|++.+|.++|++. ....+..-|.. ++. + |.-
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 4555555555555432221 22222233343 3345678899999999887 23333333322 222 2 222
Q ss_pred cCChhHHHHHHHHHhccCCC
Q 006388 457 HGNVEIGKWAAESLLELDPY 476 (647)
Q Consensus 457 ~~~~~~a~~~~~~~~~~~p~ 476 (647)
..+.-.+...+++..+++|.
T Consensus 208 ~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPA 227 (288)
T ss_pred cccHHHHHHHHHHHHhcCCc
Confidence 36777788888999999996
No 318
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=81.96 E-value=69 Score=33.33 Aligned_cols=157 Identities=13% Similarity=0.140 Sum_probs=94.9
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 006388 241 VSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFY 320 (647)
Q Consensus 241 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 320 (647)
...-+++..+.++..+.-...+..+|..-| .+...|..++..|... ..+.-..+++++.+..+ .|+....-|++.|
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~y 142 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADKY 142 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHH
Confidence 345567777777777777778888887754 4667777777777766 55666777777777653 3455556677777
Q ss_pred HhcCCHHHHHHHHhhcCCC------C---hhhHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhcCC
Q 006388 321 GKCGNIEDSHRLFNEMNVR------D---EVSWTALVSGYAKFGKANETIDLFEKMLS-HGLKPDEVTLIGVLSACSRAG 390 (647)
Q Consensus 321 ~~~g~~~~A~~~~~~~~~~------d---~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g 390 (647)
-+ ++.+.+...|.++..+ + -..|..++..- ..+.+..+.+..+... .|..--.+.+.-+-.-|....
T Consensus 143 Ek-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 66 7777777777765411 1 11344444311 2344555555555543 233333444444555666667
Q ss_pred cHHHHHHHHHHHHH
Q 006388 391 LVEKGRHYFEIMVK 404 (647)
Q Consensus 391 ~~~~a~~~~~~~~~ 404 (647)
++++|++++..+.+
T Consensus 220 N~~eai~Ilk~il~ 233 (711)
T COG1747 220 NWTEAIRILKHILE 233 (711)
T ss_pred CHHHHHHHHHHHhh
Confidence 77777777666654
No 319
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=81.41 E-value=90 Score=34.32 Aligned_cols=68 Identities=16% Similarity=0.001 Sum_probs=43.3
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCCh-------HHHHHHHHHHHHhCCCCchh
Q 006388 9 WNLLISGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCV-------DLGRQIHGHILKFGFGSYVF 78 (647)
Q Consensus 9 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~-------~~a~~~~~~~~~~g~~~~~~ 78 (647)
--++|=.+.+.|++++|.++.......- ......|...++.+....+- +....-+++..+.....|++
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~--~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRNQF--QKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGGGS---TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhhh--cchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 3457778899999999999996665543 56677889999998775432 24445555555544333544
No 320
>PRK10941 hypothetical protein; Provisional
Probab=81.15 E-value=12 Score=35.99 Aligned_cols=62 Identities=23% Similarity=0.137 Sum_probs=54.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhC
Q 006388 446 GWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 446 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 507 (647)
..+.|-.++.+.++++.|.++.+.++.+.|+++.-+..-+-+|.+.|.+..|..=++...+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 35666777889999999999999999999999988888999999999999999988887664
No 321
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.84 E-value=54 Score=31.42 Aligned_cols=58 Identities=14% Similarity=0.032 Sum_probs=51.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHH
Q 006388 448 ATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMR 505 (647)
Q Consensus 448 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 505 (647)
+.....|...|.+.+|..+.++++.++|-+...+-.|.+.|+..|+--.|.+-++++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3344568899999999999999999999999999999999999999888888777774
No 322
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=80.72 E-value=25 Score=27.52 Aligned_cols=88 Identities=11% Similarity=0.130 Sum_probs=58.0
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006388 189 ALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMAWKNVVSWTAMLVGYGQNGCSEEAVKIFCNMQR 268 (647)
Q Consensus 189 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 268 (647)
..++|..+-+.+...+-. ...+--.-+..+...|++++|..+.+.+..||...|-+|-.. +.|..+++..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 345555555555443311 222222334567788999999999999999999999887653 56777777777777877
Q ss_pred CCCCCCHHHHHH
Q 006388 269 NGIEPDDFTLGS 280 (647)
Q Consensus 269 ~g~~p~~~t~~~ 280 (647)
+| .|...+|..
T Consensus 97 sg-~p~lq~Faa 107 (115)
T TIGR02508 97 SG-DPRLQTFVA 107 (115)
T ss_pred CC-CHHHHHHHH
Confidence 76 565555543
No 323
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=80.66 E-value=5.1 Score=38.77 Aligned_cols=86 Identities=21% Similarity=0.205 Sum_probs=61.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcC
Q 006388 348 VSGYAKFGKANETIDLFEKMLSHGLKP-DEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAG 426 (647)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 426 (647)
..-|.+.|.+++|++.|..-.. +.| |.+++..-..||.+...+..|..-.+..+. .-...+.+|.|.|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia---------Ld~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA---------LDKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH---------hhHHHHHHHHHHH
Confidence 4569999999999999998776 467 899999999999999988887766555442 1123456666654
Q ss_pred -------CHHHHHHHHHhC-CCCCCh
Q 006388 427 -------RLEEAKSFINKM-PFPPDA 444 (647)
Q Consensus 427 -------~~~~A~~~~~~~-~~~p~~ 444 (647)
...||.+-++.. .++|+.
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 555555555444 466763
No 324
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=80.61 E-value=15 Score=32.49 Aligned_cols=45 Identities=16% Similarity=0.121 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCC----hhHHHHHHHHH
Q 006388 460 VEIGKWAAESLLELDPYNPASYVLLSSIYASKGK----WDHVSQLRRTM 504 (647)
Q Consensus 460 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~a~~~~~~m 504 (647)
+++|+.-+++++.++|+...++..++++|...|. -.+|.++|++.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 4567777788888999999999999999987664 23444444444
No 325
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=80.13 E-value=3.5 Score=23.48 Aligned_cols=29 Identities=28% Similarity=0.189 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 006388 447 WATLLSSCRIHGNVEIGKWAAESLLELDP 475 (647)
Q Consensus 447 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 475 (647)
|..+...+...++++.|...+++.++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 44445555555555555555555555544
No 326
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.03 E-value=52 Score=30.70 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 006388 243 WTAMLVGYGQNGCSEEAVKIFCNM 266 (647)
Q Consensus 243 ~~~li~~~~~~g~~~~A~~~~~~m 266 (647)
++--...|..+|.++.|-..+++.
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHH
Confidence 444555666666666655555443
No 327
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=79.75 E-value=2.4 Score=28.86 Aligned_cols=32 Identities=25% Similarity=0.311 Sum_probs=25.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCchh
Q 006388 449 TLLSSCRIHGNVEIGKWAAESLLELDPYNPAS 480 (647)
Q Consensus 449 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 480 (647)
.+.-++.+.|+++.|.+..+.+++.+|+|..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 45567889999999999999999999988644
No 328
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=79.57 E-value=1.1 Score=38.36 Aligned_cols=83 Identities=18% Similarity=0.199 Sum_probs=52.4
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChhHH
Q 006388 180 VLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMAWKNVVSWTAMLVGYGQNGCSEEA 259 (647)
Q Consensus 180 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 259 (647)
++..+.+.+..+....+++.+.+.+...+....+.|+..|++.++.+...++++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4555666667777777777777666566677788888888888777777777764332 2334455555666666666
Q ss_pred HHHHHH
Q 006388 260 VKIFCN 265 (647)
Q Consensus 260 ~~~~~~ 265 (647)
.-++.+
T Consensus 90 ~~Ly~~ 95 (143)
T PF00637_consen 90 VYLYSK 95 (143)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 655554
No 329
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.55 E-value=18 Score=34.83 Aligned_cols=51 Identities=16% Similarity=0.135 Sum_probs=45.1
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcC
Q 006388 154 LEREAIDLFREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRND 204 (647)
Q Consensus 154 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 204 (647)
++++++.++..=.+-|+-||.++++.+++.+.+.+++..|.++.-.|+...
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 677899988888899999999999999999999999999998888877655
No 330
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=79.45 E-value=3.5 Score=24.60 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=25.1
Q ss_pred hhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 479 ASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 479 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
.+|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4678899999999999999999998765
No 331
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=79.36 E-value=3 Score=24.62 Aligned_cols=25 Identities=12% Similarity=0.026 Sum_probs=12.6
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCC
Q 006388 451 LSSCRIHGNVEIGKWAAESLLELDP 475 (647)
Q Consensus 451 l~~~~~~~~~~~a~~~~~~~~~~~p 475 (647)
..++.+.|+.++|...++++++..|
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCc
Confidence 3344445555555555555555544
No 332
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.33 E-value=9.1 Score=34.45 Aligned_cols=75 Identities=23% Similarity=0.236 Sum_probs=50.2
Q ss_pred HHcCCHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCC----CCchhHHHHHHhhhhCCChhH
Q 006388 423 SRAGRLEEAKSFINKMPFPP--DAIGWATLLSSCRIHGNVEIGKWAAESLLELDP----YNPASYVLLSSIYASKGKWDH 496 (647)
Q Consensus 423 ~~~g~~~~A~~~~~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~ 496 (647)
.+.|+ ++|.+.|-++...| +....-.-+..|....|.++++.++-+++++.+ -|+..+.+|+.+|.+.|+++.
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34454 56676666663223 223333444445557788889999888887643 268889999999999999888
Q ss_pred HH
Q 006388 497 VS 498 (647)
Q Consensus 497 a~ 498 (647)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 74
No 333
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.70 E-value=30 Score=27.15 Aligned_cols=61 Identities=18% Similarity=0.303 Sum_probs=43.8
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 006388 318 TFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIG 381 (647)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 381 (647)
..+...|++++|..+.+....||...|-++-. .+.|..+++..-+.+|..+| .|...+|..
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 44567788888888888888888888877654 35677777777777777765 555555543
No 334
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.64 E-value=21 Score=37.60 Aligned_cols=99 Identities=17% Similarity=0.115 Sum_probs=54.6
Q ss_pred hcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 006388 221 KCKSIKYAESVFRTMAWKNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGR 300 (647)
Q Consensus 221 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 300 (647)
+.|+++.|.++-.+. .+..-|..|..+..+.|++..|.+.|.+... |..|+-.+...|+-+....+-..
T Consensus 649 ~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred hcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHH
Confidence 445555555544332 2445566666666666666666666655443 34455555555555555555555
Q ss_pred HHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 006388 301 SLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEM 336 (647)
Q Consensus 301 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 336 (647)
..+.|.. |.-.-+|...|+++++.+++.+-
T Consensus 718 ~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 718 AKKQGKN------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHhhccc------chHHHHHHHcCCHHHHHHHHHhc
Confidence 5554422 22233466677888877777654
No 335
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=78.62 E-value=88 Score=32.52 Aligned_cols=80 Identities=11% Similarity=-0.007 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhcCChHHHHHHhc
Q 006388 23 NDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFG-FGSYVFVGSPLVDMYAKLGLIYDAKRGFD 101 (647)
Q Consensus 23 ~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 101 (647)
.....+|+....+- +.|...|..-+..|.+.+.+.+...++..|+... ..|+..++.+.= -|-....++.|+.+|.
T Consensus 88 ~rIv~lyr~at~rf--~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~w-efe~n~ni~saRalfl 164 (568)
T KOG2396|consen 88 NRIVFLYRRATNRF--NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKW-EFEINLNIESARALFL 164 (568)
T ss_pred HHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhh-HHhhccchHHHHHHHH
Confidence 34455566555543 4477788888888877777888888888877653 344444444322 2333344777777777
Q ss_pred cCCC
Q 006388 102 ELPE 105 (647)
Q Consensus 102 ~~~~ 105 (647)
+-.+
T Consensus 165 rgLR 168 (568)
T KOG2396|consen 165 RGLR 168 (568)
T ss_pred HHhh
Confidence 6653
No 336
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.35 E-value=51 Score=29.62 Aligned_cols=113 Identities=15% Similarity=0.094 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHH--HHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHH-----HHHHHHHcCCHHHH
Q 006388 359 ETIDLFEKMLSHGLKPDEVTLIG--VLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTC-----MIDILSRAGRLEEA 431 (647)
Q Consensus 359 ~A~~~~~~m~~~g~~p~~~t~~~--ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-----li~~~~~~g~~~~A 431 (647)
+.....+++....-.-...++.. +...+...+++++|...++.... .|..+.+.. |.......|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 45555555554321212222222 23456677788888777765542 122233333 34556677888888
Q ss_pred HHHHHhCCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 006388 432 KSFINKMPFPPD--AIGWATLLSSCRIHGNVEIGKWAAESLLELDPY 476 (647)
Q Consensus 432 ~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 476 (647)
+..++...- ++ ...-..-...+...|+-++|+..|++.++.+++
T Consensus 146 L~~L~t~~~-~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 146 LKTLDTIKE-ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHhcccc-ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 888877631 21 222333445677778888888888887777643
No 337
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=77.76 E-value=2.5 Score=24.95 Aligned_cols=28 Identities=14% Similarity=0.286 Sum_probs=24.5
Q ss_pred hHHHHHHhhhhCCChhHHHHHHHHHHhC
Q 006388 480 SYVLLSSIYASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 480 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 507 (647)
++..++.+|.+.|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567899999999999999999998764
No 338
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=77.37 E-value=89 Score=31.90 Aligned_cols=58 Identities=26% Similarity=0.401 Sum_probs=48.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 006388 314 NALVTFYGKCGNIEDSHRLFNEMNVR---DEVSWTALVSGYAKFGKANETIDLFEKMLSHG 371 (647)
Q Consensus 314 ~~li~~~~~~g~~~~A~~~~~~~~~~---d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 371 (647)
..|+.-|...|++.+|...++++.-| ..+.+-+++.+.-+.|+-...+.++++.-.+|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 45778889999999999999998866 56788899999999988888888888777665
No 339
>PRK12798 chemotaxis protein; Reviewed
Probab=77.23 E-value=88 Score=31.81 Aligned_cols=179 Identities=14% Similarity=0.208 Sum_probs=114.3
Q ss_pred cCCHHHHHHHHhhcCCC----ChhhHHHHHHH-HHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhcCCcHH
Q 006388 323 CGNIEDSHRLFNEMNVR----DEVSWTALVSG-YAKFGKANETIDLFEKMLSHGLKPDE----VTLIGVLSACSRAGLVE 393 (647)
Q Consensus 323 ~g~~~~A~~~~~~~~~~----d~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~ 393 (647)
.|+.++|.+.|..+... ....|-+|+.+ .....++.+|+.+|++..-. .|-. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 47777787777777632 44556666655 34466888999999887652 4432 23444455567889999
Q ss_pred HHHHHHHHHHHhcCCCcChHHHHH-HHHHHHHcC---CHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 006388 394 KGRHYFEIMVKEYGIRPIHDHYTC-MIDILSRAG---RLEEAKSFINKMPFPPDAIGWATLLSSCRIHGNVEIGKWAAES 469 (647)
Q Consensus 394 ~a~~~~~~~~~~~~~~p~~~~~~~-li~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 469 (647)
++..+-....++|...|-...|.. ++..+.+.+ ..+.-..++..|.-.-....|..+...-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 998888887777777776544433 333443333 3445556666664222366888888888999999999999999
Q ss_pred HhccCCCCchhHHHHHHhhh-----hCCChhHHHHHHHHH
Q 006388 470 LLELDPYNPASYVLLSSIYA-----SKGKWDHVSQLRRTM 504 (647)
Q Consensus 470 ~~~~~p~~~~~~~~l~~~~~-----~~g~~~~a~~~~~~m 504 (647)
+..+... ...-...+..|. -..+.+++.+.+..+
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 9887633 233333334443 234466666665543
No 340
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=76.79 E-value=35 Score=34.46 Aligned_cols=96 Identities=18% Similarity=0.281 Sum_probs=66.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC----------CC-----------------CC-ChhhHHHH---HHHHHhcCC
Q 006388 411 IHDHYTCMIDILSRAGRLEEAKSFINKM----------PF-----------------PP-DAIGWATL---LSSCRIHGN 459 (647)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~~~~~~----------~~-----------------~p-~~~~~~~l---l~~~~~~~~ 459 (647)
.+.++-.+.+.+.+.|+.+.|.++++++ .+ .+ |...|.++ +..+.+.|.
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 3445555556666666666666655443 01 11 33334443 445778899
Q ss_pred hhHHHHHHHHHhccCCC-CchhHHHHHHhhh-hCCChhHHHHHHHHHHh
Q 006388 460 VEIGKWAAESLLELDPY-NPASYVLLSSIYA-SKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 460 ~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 506 (647)
+..|.+..+-++.++|. ||-.-..+++.|+ ++++++--.++.+....
T Consensus 119 ~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 119 WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 99999999999999998 8888888888886 77888888888877654
No 341
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=76.75 E-value=1.5e+02 Score=34.37 Aligned_cols=246 Identities=9% Similarity=-0.069 Sum_probs=142.8
Q ss_pred CCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCCh-HHHHHHhccCCCCCchHHHHHHHH
Q 006388 39 NLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSPLVDMYAKLGLI-YDAKRGFDELPEKNIVMYNTMITG 117 (647)
Q Consensus 39 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~li~~ 117 (647)
.+|...-...+..+...++.+ +...+..+++ .++..+-...+..+.+.+.. .....+...+..+|...-...+.+
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~a 707 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDV 707 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHH
Confidence 456666666677777776543 4444444443 34555555555555544321 112222233334566555556666
Q ss_pred HHhcCChHHHHHHhhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHH-HHHH
Q 006388 118 LLRRGLVEESRRLFRGMKDKDSISWTTMITGLMQNGLEREAIDLFREMRLEGLAMDQFTFGSVLTACGGLLALEE-GKQI 196 (647)
Q Consensus 118 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~-a~~~ 196 (647)
+...+.- ....+...+..+|...-...+.++.+.+..+. +..... .+|...-.....++...+..+. +...
T Consensus 708 L~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~~~~~~~ 779 (897)
T PRK13800 708 LRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGGAPAGDA 779 (897)
T ss_pred HHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccccchhHHH
Confidence 6544321 12345556667777777777788777665432 222222 3455556666677776665433 2344
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH-HHHhcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 006388 197 HAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAE-SVFRTMAWKNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDD 275 (647)
Q Consensus 197 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 275 (647)
+..+.+ .+|..+-.+.+..+.+.|..+.+. .+...+..+|...-...+.++...+. +++...+..+.+ .|+.
T Consensus 780 L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~ 852 (897)
T PRK13800 780 VRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT---DPHL 852 (897)
T ss_pred HHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCCH
Confidence 444443 567888888999999998765543 34455556666566666777777765 456677777664 5677
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHH
Q 006388 276 FTLGSVISSCANLASLEEGTQFHGRSLV 303 (647)
Q Consensus 276 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 303 (647)
..-...+.++.+......+...+..+.+
T Consensus 853 ~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 853 DVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 7777777788776444556666666555
No 342
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.34 E-value=1.8 Score=41.82 Aligned_cols=88 Identities=14% Similarity=0.167 Sum_probs=59.3
Q ss_pred cCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHH
Q 006388 425 AGRLEEAKSFINKM-PFPPD-AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRR 502 (647)
Q Consensus 425 ~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 502 (647)
.|.+++|++.|... +..|. ...+.--.+++.+.+....|++-+..+++++|+....|-.-..+-...|+|++|...+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 45666777666655 33333 44455555566677777777777777777777777777666666677777888777777
Q ss_pred HHHhCCCccC
Q 006388 503 TMREKGVRKD 512 (647)
Q Consensus 503 ~m~~~g~~~~ 512 (647)
...+.++...
T Consensus 207 ~a~kld~dE~ 216 (377)
T KOG1308|consen 207 LACKLDYDEA 216 (377)
T ss_pred HHHhccccHH
Confidence 7777766544
No 343
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=76.30 E-value=16 Score=28.35 Aligned_cols=58 Identities=12% Similarity=0.040 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHH-HcCCCCchhHHHHHH
Q 006388 157 EAIDLFREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFII-RNDHKDNVFVGSALV 216 (647)
Q Consensus 157 ~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~li 216 (647)
++.+-++.+....+.|+.....+.|+||.+.+++..|.++++-+. +.|. +...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 455556666667788888888899999999999999888888766 3332 333555443
No 344
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=76.23 E-value=15 Score=37.36 Aligned_cols=119 Identities=19% Similarity=0.143 Sum_probs=65.7
Q ss_pred cCChHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHH
Q 006388 354 FGKANETI-DLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAK 432 (647)
Q Consensus 354 ~g~~~~A~-~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 432 (647)
.|+.-.|- +++..+....-.|+.+.+-+.| ..+.|.++.+.+.+....+ -+.....+..+++...-+.|++++|.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHH
Confidence 44544443 3444444443445554443333 4556777777776665543 23344556677777777777777777
Q ss_pred HHHHhC-CCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 006388 433 SFINKM-PFP-PDAIGWATLLSSCRIHGNVEIGKWAAESLLELDPY 476 (647)
Q Consensus 433 ~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 476 (647)
..-+.| +.+ .++.+...-..+-...|-++++...+++++.++|+
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 776666 211 12223333333344556677777777777777665
No 345
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=75.58 E-value=6.6 Score=24.62 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006388 241 VSWTAMLVGYGQNGCSEEAVKIFCNMQR 268 (647)
Q Consensus 241 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 268 (647)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566777777777777777777776643
No 346
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=73.51 E-value=91 Score=30.20 Aligned_cols=20 Identities=5% Similarity=-0.022 Sum_probs=16.1
Q ss_pred HHhhhhCCChhHHHHHHHHH
Q 006388 485 SSIYASKGKWDHVSQLRRTM 504 (647)
Q Consensus 485 ~~~~~~~g~~~~a~~~~~~m 504 (647)
+..+.+.++|++|.+.++..
T Consensus 253 ~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 253 GKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHhhcCHHHHHHHHHHH
Confidence 45567899999999998854
No 347
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=73.39 E-value=19 Score=28.36 Aligned_cols=48 Identities=13% Similarity=0.124 Sum_probs=31.6
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHH
Q 006388 436 NKMPFPPDAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVL 483 (647)
Q Consensus 436 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 483 (647)
-.+..-|++.+..+.+.+|++.+++..|.++++-+...-.+....|--
T Consensus 37 ~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~ 84 (108)
T PF02284_consen 37 FGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPY 84 (108)
T ss_dssp TTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHH
T ss_pred hccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHH
Confidence 334567899999999999999999999999998876544333334443
No 348
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.38 E-value=70 Score=28.78 Aligned_cols=57 Identities=11% Similarity=0.033 Sum_probs=42.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCChhh--HHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 006388 315 ALVTFYGKCGNIEDSHRLFNEMNVRDEVS--WTALVSGYAKFGKANETIDLFEKMLSHG 371 (647)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~~~~~d~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g 371 (647)
.|.......|.+++|+..++....++-.+ -..-...+...|+-++|..-|++.++.+
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 45666777888899988888877664433 3333456888888899999888888765
No 349
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=73.32 E-value=58 Score=27.84 Aligned_cols=97 Identities=12% Similarity=0.068 Sum_probs=45.3
Q ss_pred CCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCC-chHHHHHHHHHHhcCChHHHHHHhhc
Q 006388 55 RRCVDLGRQIHGHILKFGFGSYVFVGSPLVDMYAKLGLIYDAKRGFDELPEKN-IVMYNTMITGLLRRGLVEESRRLFRG 133 (647)
Q Consensus 55 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~ 133 (647)
.++.+.+..+++.|.-..+ .....-..-...+...|++++|.++|+++.+.. ...|..-+.++|-.-
T Consensus 23 ~~d~~D~e~lLdALrvLrP-~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a----------- 90 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRP-NLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA----------- 90 (153)
T ss_pred cCCHHHHHHHHHHHHHhCC-CccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh-----------
Confidence 4455555555555544321 111122222233445666666666666666432 223333332222111
Q ss_pred CCCCCeehHHHHHHHHHhCCChhHHHHHHHHHH
Q 006388 134 MKDKDSISWTTMITGLMQNGLEREAIDLFREMR 166 (647)
Q Consensus 134 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 166 (647)
..-..|..........+...++..+.+.+.
T Consensus 91 ---l~Dp~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 91 ---KGDAEWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred ---cCChHHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 122345555555556666666666666665
No 350
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=73.04 E-value=7.7 Score=21.69 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=12.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHH
Q 006388 416 TCMIDILSRAGRLEEAKSFIN 436 (647)
Q Consensus 416 ~~li~~~~~~g~~~~A~~~~~ 436 (647)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345556666666666666554
No 351
>PRK13342 recombination factor protein RarA; Reviewed
Probab=72.85 E-value=1.2e+02 Score=31.38 Aligned_cols=116 Identities=11% Similarity=0.111 Sum_probs=64.5
Q ss_pred hhHHHHHHHHHHHC---CC-CCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 006388 155 EREAIDLFREMRLE---GL-AMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAES 230 (647)
Q Consensus 155 ~~~A~~~~~~m~~~---g~-~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 230 (647)
.++...++...... |+ ..+......++..+ .|+...+..+++.+...+...+ .+....
T Consensus 153 ~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It----------------~~~v~~ 214 (413)
T PRK13342 153 EEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSIT----------------LELLEE 214 (413)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCC----------------HHHHHH
Confidence 35556666655332 33 44555555555443 5777777777776654311111 122222
Q ss_pred HHhcC---CCCChhHHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 006388 231 VFRTM---AWKNVVSWTAMLVGYGQ---NGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANL 288 (647)
Q Consensus 231 ~~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 288 (647)
++... ..++...+..+++++.+ ..+.+.|+.++..|.+.|..|....-..+..++-..
T Consensus 215 ~~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 215 ALQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred HHhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 22221 12222344555666655 478999999999999999888766655555554333
No 352
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=72.83 E-value=22 Score=32.07 Aligned_cols=68 Identities=7% Similarity=-0.146 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC-------CCCchHHHHHHHHHHhcCChHHH
Q 006388 59 DLGRQIHGHILKFGFGSYVFVGSPLVDMYAKLGLIYDAKRGFDELP-------EKNIVMYNTMITGLLRRGLVEES 127 (647)
Q Consensus 59 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A 127 (647)
+.|+..|-.+...+.-.++...-+|...|.+ .+.++|..++.... +.|+..+.+|++.+-+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~k-rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYTK-RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3455555555555544555555555555553 34555554443332 23555666666666666666655
No 353
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.54 E-value=1.4e+02 Score=32.46 Aligned_cols=49 Identities=24% Similarity=0.331 Sum_probs=25.0
Q ss_pred ChhHHHHHHHHHhccCCCCchhHHHHHHh--hhhCCChhHHHHHHHHHHhCCCc
Q 006388 459 NVEIGKWAAESLLELDPYNPASYVLLSSI--YASKGKWDHVSQLRRTMREKGVR 510 (647)
Q Consensus 459 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~m~~~g~~ 510 (647)
+.+.|...++++.+.++ +.+...+... +.. ++++.+.-.+..+.+.|.+
T Consensus 379 ~~~~A~~~~k~aA~~g~--~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKGN--PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred CHHHHHHHHHHHHHccC--hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 45556666666665552 2222222222 223 6666666666666655554
No 354
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=71.94 E-value=1.3e+02 Score=31.33 Aligned_cols=77 Identities=12% Similarity=0.026 Sum_probs=56.9
Q ss_pred CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCC-CChHHHHHHHHHHHHhCCCCchhhHHH
Q 006388 4 HDGVSWNLLISGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSR-RCVDLGRQIHGHILKFGFGSYVFVGSP 82 (647)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~g~~~~~~~~~~ 82 (647)
.|+-.|..-+.-+-+.+.+.+.-.+|..|.... |.++..|..-..-.... .+++.|+.++...++.. +.++..+-.
T Consensus 103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H--p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n-pdsp~Lw~e 179 (568)
T KOG2396|consen 103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH--PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN-PDSPKLWKE 179 (568)
T ss_pred CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC-CCChHHHHH
Confidence 377889999988888888999999999999987 66777776655544433 45899999998888875 333444433
Q ss_pred H
Q 006388 83 L 83 (647)
Q Consensus 83 l 83 (647)
.
T Consensus 180 y 180 (568)
T KOG2396|consen 180 Y 180 (568)
T ss_pred H
Confidence 3
No 355
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.62 E-value=71 Score=28.12 Aligned_cols=121 Identities=12% Similarity=0.130 Sum_probs=72.3
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChH-HHHHH--HHHHHHcC
Q 006388 351 YAKFGKANETIDLFEKMLSHGLKPDEV-TLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHD-HYTCM--IDILSRAG 426 (647)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l--i~~~~~~g 426 (647)
+++.+..++|+.-|..+.+.|..-=++ ............|+...|...|+++-... -.|... -..-| .-++...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt-~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT-SIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC-CCcchhhHHHHHHHHHHHhccc
Confidence 456777888888888887766432222 22223334567788888888888776542 222211 11111 12345677
Q ss_pred CHHHHHHHHHhCCCC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHhc
Q 006388 427 RLEEAKSFINKMPFP--P-DAIGWATLLSSCRIHGNVEIGKWAAESLLE 472 (647)
Q Consensus 427 ~~~~A~~~~~~~~~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 472 (647)
.+++...-.+.+..+ | ....-.+|.-+-.+.|++..|...|+++..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 777777777766322 2 234455666677778888888888877765
No 356
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=71.19 E-value=57 Score=31.71 Aligned_cols=49 Identities=12% Similarity=0.139 Sum_probs=25.4
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhcCCcHHHHHHHHH
Q 006388 350 GYAKFGKANETIDLFEKMLSHGLKPDEV---TLIGVLSACSRAGLVEKGRHYFE 400 (647)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~ 400 (647)
+-.+.|+..+|.+.|+.+.+. .|-.. .-..++.+|.....+.....++-
T Consensus 284 CARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLa 335 (556)
T KOG3807|consen 284 CARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLA 335 (556)
T ss_pred HHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567777777777766553 22111 22345566655555555544443
No 357
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=71.03 E-value=51 Score=26.25 Aligned_cols=87 Identities=10% Similarity=0.147 Sum_probs=53.7
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006388 188 LALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMAWKNVVSWTAMLVGYGQNGCSEEAVKIFCNMQ 267 (647)
Q Consensus 188 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 267 (647)
...++|..+.+.+...+- ....+.-.-+..+...|++++|...=.....||...|-+|-. .+.|..+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 456777777777776653 333333444556778899999965555666788888877654 46788888888887776
Q ss_pred HCCCCCCHHHH
Q 006388 268 RNGIEPDDFTL 278 (647)
Q Consensus 268 ~~g~~p~~~t~ 278 (647)
.+| .|....|
T Consensus 97 ~~g-~~~~q~F 106 (116)
T PF09477_consen 97 SSG-SPELQAF 106 (116)
T ss_dssp T-S-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 665 4444444
No 358
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=70.47 E-value=7.3 Score=25.32 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=23.1
Q ss_pred HHHHHhhhhCCChhHHHHHHHHHHhCC
Q 006388 482 VLLSSIYASKGKWDHVSQLRRTMREKG 508 (647)
Q Consensus 482 ~~l~~~~~~~g~~~~a~~~~~~m~~~g 508 (647)
..|+.+|...|+.+.|++++++....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468899999999999999999988643
No 359
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.28 E-value=1.8e+02 Score=32.18 Aligned_cols=167 Identities=11% Similarity=0.109 Sum_probs=100.3
Q ss_pred HhCCCChHHHHHHHHHHHHhCCCC---chhhHHHHHHHHHhcCChHHHHHHhccCCCCCchHHHHHHHHHHhcCChHHHH
Q 006388 52 SSSRRCVDLGRQIHGHILKFGFGS---YVFVGSPLVDMYAKLGLIYDAKRGFDELPEKNIVMYNTMITGLLRRGLVEESR 128 (647)
Q Consensus 52 ~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 128 (647)
+.+.+.+++|..+-.... |..+ -..+...+|..+.-.|++++|-.+.-.|...+..-|..-+..+...++.....
T Consensus 366 ll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia 443 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIA 443 (846)
T ss_pred HHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhh
Confidence 334445555554433321 2223 23456778888888999999999999999888888888888888888877665
Q ss_pred HHhhcCCC-CCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCC
Q 006388 129 RLFRGMKD-KDSISWTTMITGLMQNGLEREAIDLFREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKD 207 (647)
Q Consensus 129 ~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 207 (647)
.++-.-+. -+...|..++..+.. . -..-|.+.+.. -+++...-..++++- ..+..+. .-
T Consensus 444 ~~lPt~~~rL~p~vYemvLve~L~-~----~~~~F~e~i~~-Wp~~Lys~l~iisa~------------~~q~~q~--Se 503 (846)
T KOG2066|consen 444 PYLPTGPPRLKPLVYEMVLVEFLA-S----DVKGFLELIKE-WPGHLYSVLTIISAT------------EPQIKQN--SE 503 (846)
T ss_pred ccCCCCCcccCchHHHHHHHHHHH-H----HHHHHHHHHHh-CChhhhhhhHHHhhc------------chHHHhh--cc
Confidence 55544333 256678888887776 2 22333344332 112222222222211 1111111 11
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh
Q 006388 208 NVFVGSALVDMYCKCKSIKYAESVFRTMAWKNV 240 (647)
Q Consensus 208 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~ 240 (647)
+..+...|+..|...+++++|..++-...++++
T Consensus 504 ~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 504 STALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred chhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 223334488999999999999999888776644
No 360
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=70.03 E-value=16 Score=33.18 Aligned_cols=64 Identities=20% Similarity=0.163 Sum_probs=50.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 006388 415 YTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNP 478 (647)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 478 (647)
.+.-+..+.+.+.+++|+...+.- +-+| |...-..|+..++..|++++|..-++-+-++.|++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 344566778889999999887654 4455 466777888889999999999999998889988753
No 361
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=69.93 E-value=9.1 Score=39.08 Aligned_cols=85 Identities=16% Similarity=0.136 Sum_probs=58.4
Q ss_pred HHHcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHH
Q 006388 422 LSRAGRLEEAKSFINKM-PFPPD-AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQ 499 (647)
Q Consensus 422 ~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 499 (647)
+...+.++.|..++.++ ..+|+ +..|..-..++.+.+++..|..-+.++++++|.....|+.-+.++.+.+++.+|..
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHH
Confidence 33455666666666665 45665 33333333667777888888888888888888777777777777888888888877
Q ss_pred HHHHHHh
Q 006388 500 LRRTMRE 506 (647)
Q Consensus 500 ~~~~m~~ 506 (647)
.++....
T Consensus 94 ~l~~~~~ 100 (476)
T KOG0376|consen 94 DLEKVKK 100 (476)
T ss_pred HHHHhhh
Confidence 7776543
No 362
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=69.66 E-value=59 Score=29.30 Aligned_cols=58 Identities=17% Similarity=0.103 Sum_probs=33.5
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 006388 420 DILSRAGRLEEAKSFINKM-PFPPD-AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYN 477 (647)
Q Consensus 420 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 477 (647)
-++.+.+.++.|++-..+. .+.|. ......-..+|.+...++.|+.-|+++++.+|..
T Consensus 142 aa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 142 AALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence 3445555555555554443 33332 1122222335666677888888888888888854
No 363
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=69.50 E-value=2e+02 Score=32.41 Aligned_cols=193 Identities=15% Similarity=0.128 Sum_probs=105.2
Q ss_pred HhcCCHHHHHHHHhhcC----CCC-------hhhHHHHHHH-HHHcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 006388 321 GKCGNIEDSHRLFNEMN----VRD-------EVSWTALVSG-YAKFGKANETIDLFEKMLSH----GLKPDEVTLIGVLS 384 (647)
Q Consensus 321 ~~~g~~~~A~~~~~~~~----~~d-------~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~ 384 (647)
....++++|..++.+.. .++ ...|+++-.. ....|++++|+++-+..... -..+..+.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 44677888877776543 322 1246655433 33568889999888877653 12233445555666
Q ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHH-----HHHHHcCCHHHH--HHHHHhC-----CCCCC----hhhHH
Q 006388 385 ACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMI-----DILSRAGRLEEA--KSFINKM-----PFPPD----AIGWA 448 (647)
Q Consensus 385 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li-----~~~~~~g~~~~A--~~~~~~~-----~~~p~----~~~~~ 448 (647)
+..-.|++++|..+.....+. .-.-+..++...+ ..+...|....| ...|... +-+|- ..+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 666788999998877665432 1122333333222 234556633222 2222222 11221 23344
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhcc----CCCCc---hhHHHHHHhhhhCCChhHHHHHHHHHHhCCCccCCCcce
Q 006388 449 TLLSSCRIHGNVEIGKWAAESLLEL----DPYNP---ASYVLLSSIYASKGKWDHVSQLRRTMREKGVRKDPGCSW 517 (647)
Q Consensus 449 ~ll~~~~~~~~~~~a~~~~~~~~~~----~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~ 517 (647)
.++.++.+ .+.+..-....++. .|..- ..+..|+..+...|+.++|....+++........+..-|
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~ 657 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDY 657 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchH
Confidence 44444433 44444433333332 23221 223478889999999999999999998765555443333
No 364
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.47 E-value=54 Score=30.92 Aligned_cols=177 Identities=11% Similarity=0.122 Sum_probs=105.0
Q ss_pred CCHHHHHHHHhhcCC--C-----ChhhHHHHHHHHHHcCChHHHHHHHHHHHH---CCCCC--CHHHHHHHHHHHhcCCc
Q 006388 324 GNIEDSHRLFNEMNV--R-----DEVSWTALVSGYAKFGKANETIDLFEKMLS---HGLKP--DEVTLIGVLSACSRAGL 391 (647)
Q Consensus 324 g~~~~A~~~~~~~~~--~-----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p--~~~t~~~ll~a~~~~g~ 391 (647)
.++++|+.-|++..+ + .-.+.-.||..+.+.|++++.++.|++|+. +.+.- +..+.++++..-+.+.+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 456667666666541 1 123445577888888888888888888764 22222 34577788877777777
Q ss_pred HHHHHHHHHHHHHhcC----CCcChHHHHHHHHHHHHcCCHHHHHHHHHhCC-------CCCC-------hhhHHHHHHH
Q 006388 392 VEKGRHYFEIMVKEYG----IRPIHDHYTCMIDILSRAGRLEEAKSFINKMP-------FPPD-------AIGWATLLSS 453 (647)
Q Consensus 392 ~~~a~~~~~~~~~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~p~-------~~~~~~ll~~ 453 (647)
.+--.++++.-.+... -..--.+-+-|...|...|.+.+-.+++++.. -..| ..+|..=+..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 6666666554433211 11112233556777777777777777776651 0111 3455556667
Q ss_pred HHhcCChhHHHHHHHHHhccCC--CCchhHHH----HHHhhhhCCChhHHHHH
Q 006388 454 CRIHGNVEIGKWAAESLLELDP--YNPASYVL----LSSIYASKGKWDHVSQL 500 (647)
Q Consensus 454 ~~~~~~~~~a~~~~~~~~~~~p--~~~~~~~~----l~~~~~~~g~~~~a~~~ 500 (647)
|..+++-..-..++++++.... +.|.+.-. =+.+..+.|+|++|..-
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTD 253 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTD 253 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhH
Confidence 7777777778888888775542 23322221 12345677888887653
No 365
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=69.41 E-value=17 Score=27.06 Aligned_cols=47 Identities=11% Similarity=0.105 Sum_probs=23.8
Q ss_pred cCCcHHHHHHHHHHHHHhcCCCcCh-HHHHHHHHHHHHcCCHHHHHHH
Q 006388 388 RAGLVEKGRHYFEIMVKEYGIRPIH-DHYTCMIDILSRAGRLEEAKSF 434 (647)
Q Consensus 388 ~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~ 434 (647)
+....++|+..|....+...-.|+. .++.+|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666665555442222221 3455555566666666555544
No 366
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=69.22 E-value=9.8 Score=29.44 Aligned_cols=45 Identities=13% Similarity=0.156 Sum_probs=34.9
Q ss_pred HHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhCC
Q 006388 464 KWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREKG 508 (647)
Q Consensus 464 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 508 (647)
...+++.++.+|+|...-..++..|...|++++|.+.+-.+.+..
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 445667777889998999999999999999999999888887653
No 367
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.40 E-value=1.9e+02 Score=31.38 Aligned_cols=77 Identities=14% Similarity=-0.009 Sum_probs=37.4
Q ss_pred CHHHHHHHHHhCCCCCChhhHHHHHHHHHhc----CChhHHHHHHHHHhccCCCCchhHHHHHHhhhh----CCChhHHH
Q 006388 427 RLEEAKSFINKMPFPPDAIGWATLLSSCRIH----GNVEIGKWAAESLLELDPYNPASYVLLSSIYAS----KGKWDHVS 498 (647)
Q Consensus 427 ~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~ 498 (647)
+.+.+..++.+...+-+......|...|... .+.+.|...+.++.+.. +.....|+.++-. .. +..|.
T Consensus 454 ~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~-~~~a~ 529 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKV-LHLAK 529 (552)
T ss_pred chhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcch-hHHHH
Confidence 3444445554443222333333333333222 24555666665555444 4455555555532 23 56777
Q ss_pred HHHHHHHhC
Q 006388 499 QLRRTMREK 507 (647)
Q Consensus 499 ~~~~~m~~~ 507 (647)
++++...+.
T Consensus 530 ~~~~~~~~~ 538 (552)
T KOG1550|consen 530 RYYDQASEE 538 (552)
T ss_pred HHHHHHHhc
Confidence 777766553
No 368
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.15 E-value=13 Score=40.89 Aligned_cols=117 Identities=20% Similarity=0.281 Sum_probs=77.7
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHH
Q 006388 354 FGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKS 433 (647)
Q Consensus 354 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 433 (647)
+.++++.+.+.+.-.--| .++|..+-+.|..+-|+.+.+.-..++ ++...+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHH
Confidence 456666666554432222 234555667777777777655333222 23457899999999
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHH
Q 006388 434 FINKMPFPPDAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRR 502 (647)
Q Consensus 434 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 502 (647)
.-.+.. |..+|..|+..-..+|+.+.|+..|++.... ..|.-.|.-.|+.++-.++.+
T Consensus 665 ~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~knf--------ekLsfLYliTgn~eKL~Km~~ 722 (1202)
T KOG0292|consen 665 AAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKNF--------EKLSFLYLITGNLEKLSKMMK 722 (1202)
T ss_pred HHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhhh--------hheeEEEEEeCCHHHHHHHHH
Confidence 888874 6789999999999999999999999876543 335555666666665444433
No 369
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=64.92 E-value=2.8e+02 Score=32.36 Aligned_cols=254 Identities=9% Similarity=-0.074 Sum_probs=135.0
Q ss_pred HHhhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc
Q 006388 129 RLFRGMKDKDSISWTTMITGLMQNGLEREAIDLFREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDN 208 (647)
Q Consensus 129 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 208 (647)
.+...+..+|+.....-+..+.+.+.. ++...+...... +|...-...+.++...+........+..+++ .+|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPP-GFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcch-hHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCC
Confidence 344444456666666666666666543 344444444432 2333333444444333211111122223332 245
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 006388 209 VFVGSALVDMYCKCKSIKYAESVFRTMAWKNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANL 288 (647)
Q Consensus 209 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 288 (647)
..+-...++++...+.- ....+...+..+|...-...+.++.+.+..+. +.... -.++...-.....++...
T Consensus 698 ~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 698 PVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATL 769 (897)
T ss_pred HHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHh
Confidence 55555566665544321 12334455566666655666666666554332 12222 245555555666666666
Q ss_pred CChHH-HHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHH-HHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHH
Q 006388 289 ASLEE-GTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSH-RLFNEMNVRDEVSWTALVSGYAKFGKANETIDLFEK 366 (647)
Q Consensus 289 ~~~~~-a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~ 366 (647)
+..+. +...+..+.+ .++..+-.+.+..+.+.|..+.+. .+...+..+|...-...+.++...+. +++...+..
T Consensus 770 ~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~ 845 (897)
T PRK13800 770 GAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVE 845 (897)
T ss_pred ccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHH
Confidence 55432 2333333332 346777778888888888765543 34444556666666667777777765 456666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 006388 367 MLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVK 404 (647)
Q Consensus 367 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 404 (647)
+.+ .|+...-...+.++.+......+...+....+
T Consensus 846 ~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 846 ALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred Hhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 664 56777667777777775434456666666654
No 370
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=63.98 E-value=1.1e+02 Score=31.19 Aligned_cols=53 Identities=13% Similarity=0.103 Sum_probs=35.8
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhc--CCcHHHHHHHHHHHHH
Q 006388 351 YAKFGKANETIDLFEKMLSHGLKPDEV--TLIGVLSACSR--AGLVEKGRHYFEIMVK 404 (647)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~--~g~~~~a~~~~~~~~~ 404 (647)
+...+++..|.++|+++... ++++.. .+..+..+|.. .-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34678888888888888876 555554 34444455543 4567788888887655
No 371
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=63.17 E-value=24 Score=32.70 Aligned_cols=65 Identities=12% Similarity=0.052 Sum_probs=37.5
Q ss_pred CCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHH
Q 006388 440 FPPDA-IGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTM 504 (647)
Q Consensus 440 ~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 504 (647)
+.|.+ ..|..-+-.+.+..+++.+..--.+++++.|+.......|+........+++|...+++.
T Consensus 39 ~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 39 INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 34443 333444444455556666666666666666666666666666666666666666666655
No 372
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=63.13 E-value=2e+02 Score=30.16 Aligned_cols=14 Identities=36% Similarity=0.344 Sum_probs=8.4
Q ss_pred ccccHHHHHHHhhc
Q 006388 577 NHHSEKLAIAFGLL 590 (647)
Q Consensus 577 ~~~~e~la~~~~~~ 590 (647)
+.|-|+|+..|+..
T Consensus 429 ~sl~ekl~~kfk~s 442 (711)
T COG1747 429 VSLEEKLAVKFKAS 442 (711)
T ss_pred cChHHHHHHHhhcc
Confidence 44566666666554
No 373
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=62.50 E-value=27 Score=32.23 Aligned_cols=66 Identities=17% Similarity=0.059 Sum_probs=44.1
Q ss_pred hhhHHHHHHHHHhcCChhH-------HHHHHHHHhccC--CC----CchhHHHHHHhhhhCCChhHHHHHHHHHHhCCC
Q 006388 444 AIGWATLLSSCRIHGNVEI-------GKWAAESLLELD--PY----NPASYVLLSSIYASKGKWDHVSQLRRTMREKGV 509 (647)
Q Consensus 444 ~~~~~~ll~~~~~~~~~~~-------a~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 509 (647)
+..+.-+.+.|+..|+.+. |...|+++.+.+ |. .......++.++.+.|+.++|.+.+.++...+-
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 4455556666777776444 444455544433 22 235667888999999999999999999876443
No 374
>PRK10941 hypothetical protein; Provisional
Probab=62.43 E-value=32 Score=33.00 Aligned_cols=67 Identities=13% Similarity=0.055 Sum_probs=51.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhH
Q 006388 415 YTCMIDILSRAGRLEEAKSFINKM-PFPPD-AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASY 481 (647)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 481 (647)
.+.+-..|.+.++++.|+.+.+.+ .+.|+ +.-|.--.-.|.+.|....|..-++..++.-|+++.+-
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 344566778888888888888887 44554 66677777778889999999999999998888877553
No 375
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=61.90 E-value=55 Score=29.95 Aligned_cols=77 Identities=9% Similarity=-0.096 Sum_probs=53.9
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCC--CCchhhHHHHHH
Q 006388 8 SWNLLISGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGF--GSYVFVGSPLVD 85 (647)
Q Consensus 8 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~ 85 (647)
|-+..++.+.+.+...+|+...+.-.+.. |.|.-+-..+++.++-.|++++|..-++..-+... .+...+|..+|.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 34556777888888888888888877775 66777778888888888888888776666655432 233445555554
Q ss_pred H
Q 006388 86 M 86 (647)
Q Consensus 86 ~ 86 (647)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 3
No 376
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=61.78 E-value=60 Score=26.74 Aligned_cols=71 Identities=17% Similarity=0.274 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006388 359 ETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM 438 (647)
Q Consensus 359 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 438 (647)
+..+-+.......+.|+.......|.||.+..++..|.++|+.+.. ...+....|..+++ +-.-+++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~--K~g~~k~~Y~y~v~---------elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD--KCGAQKQVYPYYVK---------ELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH--hcccHHHHHHHHHH---------HHHHHHHHh
Confidence 4455566666777899999999999999999999999999998865 34444445666653 344555555
Q ss_pred CC
Q 006388 439 PF 440 (647)
Q Consensus 439 ~~ 440 (647)
++
T Consensus 136 GI 137 (149)
T KOG4077|consen 136 GI 137 (149)
T ss_pred CC
Confidence 43
No 377
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=60.18 E-value=12 Score=31.08 Aligned_cols=31 Identities=29% Similarity=0.391 Sum_probs=23.8
Q ss_pred CCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHH
Q 006388 19 HGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMS 52 (647)
Q Consensus 19 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~ 52 (647)
.|.-.+|-.+|.+|+..|- ||| .|+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~-pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGN-PPD--DWDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCC-CCc--cHHHHHHHh
Confidence 4666788899999999987 777 477777654
No 378
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=59.62 E-value=16 Score=23.82 Aligned_cols=22 Identities=9% Similarity=0.190 Sum_probs=10.2
Q ss_pred HHHHHcCCChhHHHHHHHHHHH
Q 006388 13 ISGHASHGSVNDAVKVYNLMLK 34 (647)
Q Consensus 13 i~~~~~~g~~~~A~~~~~~m~~ 34 (647)
..+|...|+.+.|.+++++...
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3444444444444444444443
No 379
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=59.36 E-value=25 Score=36.98 Aligned_cols=98 Identities=13% Similarity=0.117 Sum_probs=67.1
Q ss_pred cCCcHHHHHHHHHHHHHhcCCCcCh--HHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCChhhHHHHHHHHHhcCChhHH
Q 006388 388 RAGLVEKGRHYFEIMVKEYGIRPIH--DHYTCMIDILSRAGRLEEAKSFINKM-PF-PPDAIGWATLLSSCRIHGNVEIG 463 (647)
Q Consensus 388 ~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~~~~~~a 463 (647)
-.|+...|...+.... ...|.. .....|...+.+.|...+|..++.+. .+ ...+.++..+.+++....+++.|
T Consensus 619 ~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 4577777777766554 334422 23445666777777777888777654 21 23456777888888888888888
Q ss_pred HHHHHHHhccCCCCchhHHHHHHhh
Q 006388 464 KWAAESLLELDPYNPASYVLLSSIY 488 (647)
Q Consensus 464 ~~~~~~~~~~~p~~~~~~~~l~~~~ 488 (647)
++.++.++++.|+++..-..|..+-
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHH
Confidence 8888888888888887776665543
No 380
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=59.14 E-value=14 Score=33.93 Aligned_cols=57 Identities=32% Similarity=0.469 Sum_probs=43.5
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 006388 421 ILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYN 477 (647)
Q Consensus 421 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 477 (647)
+..+.|+.+.|.+++.+. ...| ....|-.+...--+.|+++.|.+.+++.++++|++
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 345677778888888776 4444 47788888888888888888888888888888764
No 381
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=58.73 E-value=1.9e+02 Score=28.52 Aligned_cols=83 Identities=18% Similarity=0.035 Sum_probs=56.6
Q ss_pred cHHHHHHHHHHHHHhcCC---CcChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 006388 391 LVEKGRHYFEIMVKEYGI---RPIHDHYTCMIDILSRAGRLEEAKSFINKMPFPPDAIGWATLLSSCRIHGNVEIGKWAA 467 (647)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 467 (647)
-.++|.+.|+.......- ..++.....+.....+.|..++-..+++.....++...-..++.+.....+.+.-.+++
T Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l 224 (324)
T PF11838_consen 145 CVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLL 224 (324)
T ss_dssp HHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHH
Confidence 467788888888763111 34556666777777788887766666666654567788888999988888988888899
Q ss_pred HHHhcc
Q 006388 468 ESLLEL 473 (647)
Q Consensus 468 ~~~~~~ 473 (647)
+.++..
T Consensus 225 ~~~l~~ 230 (324)
T PF11838_consen 225 DLLLSN 230 (324)
T ss_dssp HHHHCT
T ss_pred HHHcCC
Confidence 988874
No 382
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=58.31 E-value=1.1e+02 Score=32.34 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=19.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcC
Q 006388 314 NALVTFYGKCGNIEDSHRLFNEMN 337 (647)
Q Consensus 314 ~~li~~~~~~g~~~~A~~~~~~~~ 337 (647)
..|+.-|.+.+++++|..++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 356778888999999999988886
No 383
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=58.27 E-value=2.1e+02 Score=28.85 Aligned_cols=194 Identities=14% Similarity=0.177 Sum_probs=116.8
Q ss_pred CCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHH-HHHcCChHHHHHH--HHHHHHCCCCCCHHHHHHH
Q 006388 306 LISFITVSNALVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSG-YAKFGKANETIDL--FEKMLSHGLKPDEVTLIGV 382 (647)
Q Consensus 306 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~-~~~~g~~~~A~~~--~~~m~~~g~~p~~~t~~~l 382 (647)
...+..+...+++.+...++|+.--+ .+.. .-++|+...|+.- .+-|.-..-.||..|-..+
T Consensus 48 ~~s~~kv~~~i~~lc~~~~~w~~Lne---------------~i~~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~l 112 (439)
T KOG1498|consen 48 MASNTKVLEEIMKLCFSAKDWDLLNE---------------QIRLLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKL 112 (439)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHH---------------HHHHHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHH
Confidence 34455566667777777766655322 2322 3456777766642 2223333345676666666
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhhHHHH------------
Q 006388 383 LSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKMPFPPDAIGWATL------------ 450 (647)
Q Consensus 383 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l------------ 450 (647)
+..+.. +.++. +|-+.. ....-..|.+.+..+|++++|..++.+.+++ ||+++
T Consensus 113 i~tLr~---Vtegk-IyvEvE-------RarlTk~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiLEQ 177 (439)
T KOG1498|consen 113 IETLRT---VTEGK-IYVEVE-------RARLTKMLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFILEQ 177 (439)
T ss_pred HHHHHH---hhcCc-eEEeeh-------HHHHHHHHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHHHH
Confidence 654421 11110 000000 1122345667788999999999999888532 33322
Q ss_pred HHHHHhcCChhHHHHHHHHHhccC---CC----CchhHHHHHHhhhhCCChhHHHHHHHHHHhCCCccCCCcceEeEcCe
Q 006388 451 LSSCRIHGNVEIGKWAAESLLELD---PY----NPASYVLLSSIYASKGKWDHVSQLRRTMREKGVRKDPGCSWIKYKSR 523 (647)
Q Consensus 451 l~~~~~~~~~~~a~~~~~~~~~~~---p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~ 523 (647)
+..|...+|+-.|.-+.+++...- |+ -...|..++....+.+.+=++.+.++..-+.|-.+...--|+.+-..
T Consensus 178 mrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~ 257 (439)
T KOG1498|consen 178 MRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRS 257 (439)
T ss_pred HHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhh
Confidence 345778889998888887766432 22 12458888999999999999999999998877665533457765555
Q ss_pred EEEEEe
Q 006388 524 VHIFSA 529 (647)
Q Consensus 524 ~~~f~~ 529 (647)
+-.|..
T Consensus 258 iv~f~~ 263 (439)
T KOG1498|consen 258 IVSFCV 263 (439)
T ss_pred heeEEe
Confidence 545544
No 384
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=58.06 E-value=96 Score=24.81 Aligned_cols=78 Identities=18% Similarity=0.130 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 006388 291 LEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFGKANETIDLFEKMLSH 370 (647)
Q Consensus 291 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 370 (647)
.++|..|.+.+...+- ....+.-.-+..+...|++++|...=.....||...|-+|-. .+.|-.+++...+.++..+
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~ 98 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 4555555555555442 222222233444566777777744444455667777765543 3566666666666666554
Q ss_pred C
Q 006388 371 G 371 (647)
Q Consensus 371 g 371 (647)
|
T Consensus 99 g 99 (116)
T PF09477_consen 99 G 99 (116)
T ss_dssp S
T ss_pred C
Confidence 4
No 385
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=57.81 E-value=43 Score=30.29 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=14.1
Q ss_pred CcChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006388 409 RPIHDHYTCMIDILSRAGRLEEAKSFINKM 438 (647)
Q Consensus 409 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 438 (647)
.|++..|..++..+...|+.++|.+...++
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444444444444444444444444443
No 386
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=56.98 E-value=78 Score=25.46 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 006388 342 VSWTALVSGYAKFGKANETIDLFEKMLS 369 (647)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (647)
.-|..++.-|...|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3578888888888888888888888776
No 387
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=56.78 E-value=1.9e+02 Score=27.92 Aligned_cols=57 Identities=16% Similarity=0.089 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 006388 414 HYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESL 470 (647)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 470 (647)
.++.....|..+|.+.+|.++.++. ...| +...|..|+..+...|+--.+.+.++++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3455667888999999999999988 4444 6778889999999999876677666654
No 388
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=56.74 E-value=1e+02 Score=29.49 Aligned_cols=86 Identities=9% Similarity=0.042 Sum_probs=49.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHC--CCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh-
Q 006388 145 MITGLMQNGLEREAIDLFREMRLE--GLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCK- 221 (647)
Q Consensus 145 li~~~~~~g~~~~A~~~~~~m~~~--g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~- 221 (647)
=|.+++..+++.+++...-+--+. .++|.. .-..|-.|++.+....+.++-..-++.--..+..-|.+++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 367888888888887765554432 233333 333444466777777777766666554323333335555555443
Q ss_pred ----cCCHHHHHHHH
Q 006388 222 ----CKSIKYAESVF 232 (647)
Q Consensus 222 ----~g~~~~A~~~~ 232 (647)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 36666666554
No 389
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=56.38 E-value=1.3e+02 Score=28.82 Aligned_cols=88 Identities=10% Similarity=0.118 Sum_probs=52.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHH-
Q 006388 348 VSGYAKFGKANETIDLFEKMLS--HGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSR- 424 (647)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~- 424 (647)
|.+++..|++.+++...-+--+ +.++|...- .-|-.|++.+.+..+.++-......-+ .-+..-|..+++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIle--LCILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILE--LCILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHH--HHHHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHHH
Confidence 6677777888777665443332 123343332 233347788888877777666654312 2223347777776654
Q ss_pred ----cCCHHHHHHHHHhC
Q 006388 425 ----AGRLEEAKSFINKM 438 (647)
Q Consensus 425 ----~g~~~~A~~~~~~~ 438 (647)
.|.++||++++..-
T Consensus 167 VLlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGS 184 (309)
T ss_pred HHhccccHHHHHHHHhcC
Confidence 58888888888443
No 390
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=56.27 E-value=32 Score=25.64 Aligned_cols=46 Identities=11% Similarity=0.102 Sum_probs=33.8
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhcCCcHHHHHHH
Q 006388 353 KFGKANETIDLFEKMLSHGLKPDE--VTLIGVLSACSRAGLVEKGRHY 398 (647)
Q Consensus 353 ~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~ 398 (647)
...+.++|+..|+..++.-..|.. .++..++.+++..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888775433332 2778888899999998887765
No 391
>PRK11619 lytic murein transglycosylase; Provisional
Probab=55.75 E-value=3.3e+02 Score=30.24 Aligned_cols=402 Identities=11% Similarity=0.009 Sum_probs=182.6
Q ss_pred ChHHHHHHhccCCC-CCch-HHHHHHHHHHhcCChHHHHHHhhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 006388 92 LIYDAKRGFDELPE-KNIV-MYNTMITGLLRRGLVEESRRLFRGMKDKDSISWTTMITGLMQNGLEREAIDLFREMRLEG 169 (647)
Q Consensus 92 ~~~~A~~~~~~~~~-~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 169 (647)
..++....+++-+. |-.. .-...+..+.+.+++....+.+..- ..+.........+....|+.++|......+=..|
T Consensus 81 ~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g 159 (644)
T PRK11619 81 PAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG 159 (644)
T ss_pred CHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 45555555555543 2211 2223444555677777777733222 2344445566677777788777777766665444
Q ss_pred CCCChhhHHHHHHHHhcCCChHHHH--HHHHHHHHcC-----------CCCc-hhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 006388 170 LAMDQFTFGSVLTACGGLLALEEGK--QIHAFIIRND-----------HKDN-VFVGSALVDMYCKCKSIKYAESVFRTM 235 (647)
Q Consensus 170 ~~pd~~t~~~ll~~~~~~~~~~~a~--~~~~~~~~~g-----------~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~ 235 (647)
-. .......++..+.+.|.+.... +=+..+...| +.++ ......++..+.+ ...+..++...
T Consensus 160 ~~-~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~---p~~~~~~~~~~ 235 (644)
T PRK11619 160 KS-LPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQND---PNTVETFARTT 235 (644)
T ss_pred CC-CChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHC---HHHHHHHhhcc
Confidence 22 3345566666665444332211 1111111111 0111 1111122222211 22222222221
Q ss_pred CCCChhHHHHHHHHHH--hcCChhHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhccCChHHHHHHHHHHHHhCCCcch
Q 006388 236 AWKNVVSWTAMLVGYG--QNGCSEEAVKIFCNMQRNG-IEPDDF--TLGSVISSCANLASLEEGTQFHGRSLVTGLISFI 310 (647)
Q Consensus 236 ~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~ 310 (647)
. ++...-..++.++. ...+.+.|..++....... +.++.. ....+....+..+...++...+....... .+.
T Consensus 236 ~-~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~ 312 (644)
T PRK11619 236 G-PTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QST 312 (644)
T ss_pred C-CChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCc
Confidence 1 11111111111211 2345577777777664332 222221 12222222222211344444444333222 233
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCCC--C-hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 006388 311 TVSNALVTFYGKCGNIEDSHRLFNEMNVR--D-EVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACS 387 (647)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~--d-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 387 (647)
.+...-+..-.+.++++.+...|..|+.. + ..-.-=+..++...|+.++|...|++... .. +|-.++.+-
T Consensus 313 ~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~---~fYG~LAa~- 385 (644)
T PRK11619 313 SLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QR---GFYPMVAAQ- 385 (644)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CC---CcHHHHHHH-
Confidence 33344444555777787777777777521 1 22222345665667888888888877632 11 233333221
Q ss_pred cCCcHHHH-HHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 006388 388 RAGLVEKG-RHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKMPFPPDAIGWATLLSSCRIHGNVEIGKWA 466 (647)
Q Consensus 388 ~~g~~~~a-~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 466 (647)
+.|..-.- ......-.....-.| --.-+..+...|...+|...+..+-...+......+...-...|..+.++..
T Consensus 386 ~Lg~~~~~~~~~~~~~~~~~~~~~----~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~ 461 (644)
T PRK11619 386 RLGEEYPLKIDKAPKPDSALTQGP----EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQA 461 (644)
T ss_pred HcCCCCCCCCCCCCchhhhhccCh----HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 11111000 000000000000001 1123445667899999988887763234555555666666778888888877
Q ss_pred HHHHhccC---CCCchhHHHHHHhhhhCCChhHHHHHHHHHHhCCCccC
Q 006388 467 AESLLELD---PYNPASYVLLSSIYASKGKWDHVSQLRRTMREKGVRKD 512 (647)
Q Consensus 467 ~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 512 (647)
..+....+ -.-|..|......+++.-.++.+.-.---..+.+..|.
T Consensus 462 ~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 462 TIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPK 510 (644)
T ss_pred HhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCC
Confidence 65433211 01234566666666666666665543333346677654
No 392
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=55.31 E-value=3.1e+02 Score=29.88 Aligned_cols=158 Identities=15% Similarity=0.161 Sum_probs=38.6
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHH
Q 006388 341 EVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMID 420 (647)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 420 (647)
...|..-+.-+...++.. ....+.+...-.-.+.....-++..|.+.|..+.+.++.+.+-.+
T Consensus 372 ~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~--------------- 434 (566)
T PF07575_consen 372 HSLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQR--------------- 434 (566)
T ss_dssp TTTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHH---------------
T ss_pred cchHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------
Confidence 334554444444333222 344444443322334445566777777777777777776655432
Q ss_pred HHHHcCCHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChhHHHHHHHHHhcc--CCCCchhHHHHHHhh--hhCCCh
Q 006388 421 ILSRAGRLEEAKSFINKMPF--PPDAIGWATLLSSCRIHGNVEIGKWAAESLLEL--DPYNPASYVLLSSIY--ASKGKW 494 (647)
Q Consensus 421 ~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~--~~~g~~ 494 (647)
+.+.|++-+|+..+.+.+. .-+..+| .++..|...|... ...+.+.+... -.+.-..|..+-..| .+.|++
T Consensus 435 -~~~~~~~g~AL~~~~ra~d~~~v~~i~~-~ll~~~~~~~~~~-~~~ll~~i~~~~~~~~~L~fla~yreF~~~~~~~~~ 511 (566)
T PF07575_consen 435 -LLKEGRYGEALSWFIRAGDYSLVTRIAD-RLLEEYCNNGEPL-DDDLLDNIGSPMLLSQRLSFLAKYREFYELYDEGDF 511 (566)
T ss_dssp -HHHHHHHHHHHHHHH----------------------------------------------------------------
T ss_pred -HHHCCCHHHHHHHHHHCCCHHHHHHHHH-HHHHHHhcCCCcc-cHHHHHHhcchhhhhhhhHHHHHHHHHHHHHhhhhH
Confidence 3445566666666665531 1123333 2444454444322 11122111110 001112222222222 345888
Q ss_pred hHHHHHHHHHHhCCCccCCCcceEeE
Q 006388 495 DHVSQLRRTMREKGVRKDPGCSWIKY 520 (647)
Q Consensus 495 ~~a~~~~~~m~~~g~~~~~~~s~~~~ 520 (647)
.+|.+.+-.+.+.++-| ..-|..+
T Consensus 512 ~~Aa~~Lv~Ll~~~~~P--k~f~~~L 535 (566)
T PF07575_consen 512 REAASLLVSLLKSPIAP--KSFWPLL 535 (566)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHCCCCCc--HHHHHHH
Confidence 88888877777666644 3345443
No 393
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=55.29 E-value=77 Score=25.50 Aligned_cols=28 Identities=18% Similarity=0.392 Sum_probs=25.2
Q ss_pred ehHHHHHHHHHhCCChhHHHHHHHHHHH
Q 006388 140 ISWTTMITGLMQNGLEREAIDLFREMRL 167 (647)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 167 (647)
.-|..|+..|...|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3689999999999999999999999877
No 394
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=55.14 E-value=3.3e+02 Score=30.07 Aligned_cols=57 Identities=19% Similarity=0.156 Sum_probs=30.5
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhcCC-------hhHHHHHHHHHHHCC
Q 006388 214 ALVDMYCKCKSIKYAESVFRTMA---WKNVVSWTAMLVGYGQNGC-------SEEAVKIFCNMQRNG 270 (647)
Q Consensus 214 ~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g 270 (647)
++|-.+.|+|++++|.++..+.. .+....+-..+..|..+.+ -++...-|++..+..
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~ 182 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS 182 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 46667777888888877773322 2233455556666655432 234445555555443
No 395
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=54.88 E-value=19 Score=20.71 Aligned_cols=29 Identities=21% Similarity=0.239 Sum_probs=19.6
Q ss_pred CChhHHHHHHHHHhccCCCCchhHHHHHH
Q 006388 458 GNVEIGKWAAESLLELDPYNPASYVLLSS 486 (647)
Q Consensus 458 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 486 (647)
|+.+.+..++++++...|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45677777888877777766666655443
No 396
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=54.70 E-value=35 Score=26.03 Aligned_cols=33 Identities=9% Similarity=0.081 Sum_probs=16.2
Q ss_pred cCChHHHHHHhccCCCCCchHHHHHHHHHHhcCC
Q 006388 90 LGLIYDAKRGFDELPEKNIVMYNTMITGLLRRGL 123 (647)
Q Consensus 90 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 123 (647)
.|+.+.|+++++.++ +....|..++.++-..|.
T Consensus 49 ~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~ 81 (88)
T cd08819 49 HGNESGARELLKRIV-QKEGWFSKFLQALRETEH 81 (88)
T ss_pred cCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCc
Confidence 355555555555555 444444444444444443
No 397
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=54.59 E-value=91 Score=27.68 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHhc
Q 006388 359 ETIDLFEKMLSHGLKPDEV-TLIGVLSACSR 388 (647)
Q Consensus 359 ~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~ 388 (647)
+|+.-|++.+. +.|+.. ++..+..++..
T Consensus 53 dAisK~eeAL~--I~P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 53 DAISKFEEALK--INPNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHH--H-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCchHHHHHHHHHHHHH
Confidence 33334444443 456653 55555555543
No 398
>PHA02875 ankyrin repeat protein; Provisional
Probab=53.95 E-value=2.7e+02 Score=28.73 Aligned_cols=76 Identities=13% Similarity=-0.017 Sum_probs=32.1
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCCcch--HHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchh--hHHHHHHHHHhcCCh
Q 006388 18 SHGSVNDAVKVYNLMLKDGLGNLSRIT--FSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVF--VGSPLVDMYAKLGLI 93 (647)
Q Consensus 18 ~~g~~~~A~~~~~~m~~~g~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~ 93 (647)
+.|+.+- ++.+.+.|. .|+... ..+.+..++..|+.+ +.+.+++.|..++.. ...+.+...++.|+.
T Consensus 11 ~~g~~~i----v~~Ll~~g~-~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 11 LFGELDI----ARRLLDIGI-NPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HhCCHHH----HHHHHHCCC-CCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 4555433 333444565 444321 233334444455544 333344445433321 111223344455555
Q ss_pred HHHHHHhcc
Q 006388 94 YDAKRGFDE 102 (647)
Q Consensus 94 ~~A~~~~~~ 102 (647)
+.+..+++.
T Consensus 82 ~~v~~Ll~~ 90 (413)
T PHA02875 82 KAVEELLDL 90 (413)
T ss_pred HHHHHHHHc
Confidence 555555543
No 399
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=53.60 E-value=62 Score=33.24 Aligned_cols=45 Identities=20% Similarity=0.267 Sum_probs=31.8
Q ss_pred HHHHhCCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 006388 433 SFINKMPFPPD--AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYN 477 (647)
Q Consensus 433 ~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 477 (647)
.+|....++|. ..++.+-++.+.+++|+..|-.+.++++++.|..
T Consensus 287 AYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 287 AYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 44555566665 5567777788889999999999999999999854
No 400
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=53.59 E-value=88 Score=29.25 Aligned_cols=54 Identities=11% Similarity=-0.101 Sum_probs=46.5
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhC
Q 006388 454 CRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 454 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 507 (647)
+...|++-++++....++..+|.|..+|..-+.+.+..=+.++|..-+....+.
T Consensus 240 ~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 240 LLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 446788999999999999999999999999999888888888888888887663
No 401
>PF13934 ELYS: Nuclear pore complex assembly
Probab=53.20 E-value=1.4e+02 Score=27.81 Aligned_cols=20 Identities=5% Similarity=0.237 Sum_probs=9.6
Q ss_pred HHHHHHHcCChHHHHHHHHH
Q 006388 347 LVSGYAKFGKANETIDLFEK 366 (647)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~ 366 (647)
++.++...|+.+.|+.+++.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~ 133 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRA 133 (226)
T ss_pred HHHHHHHCCChhHHHHHHHh
Confidence 44444444555555554444
No 402
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=52.56 E-value=83 Score=24.08 Aligned_cols=38 Identities=13% Similarity=0.207 Sum_probs=22.7
Q ss_pred hcCChHHHHHHhhcCCCCCeehHHHHHHHHHhCCChhHH
Q 006388 120 RRGLVEESRRLFRGMKDKDSISWTTMITGLMQNGLEREA 158 (647)
Q Consensus 120 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 158 (647)
..|+.+.|..+++.++ +.+..|...+.++-+.|+-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3456666666666666 5566666666666666554443
No 403
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.66 E-value=3.1e+02 Score=29.33 Aligned_cols=54 Identities=24% Similarity=0.307 Sum_probs=39.0
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCC-CchhHHHHHHhhh-hCCChhHHHHHHHHHH
Q 006388 452 SSCRIHGNVEIGKWAAESLLELDPY-NPASYVLLSSIYA-SKGKWDHVSQLRRTMR 505 (647)
Q Consensus 452 ~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~ 505 (647)
....+.|-...|.+..+.+++++|. ||.....+++.|+ ++.+|+--.++++..+
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3445667788888888888888887 7777777777775 5566777777776663
No 404
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=49.49 E-value=3e+02 Score=27.93 Aligned_cols=88 Identities=14% Similarity=0.139 Sum_probs=49.0
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCc--ChHHHHHHHHHHH-HcCCHHHHHHHHHhCCC---------CCChhhHHHH
Q 006388 383 LSACSRAGLVEKGRHYFEIMVKEYGIRP--IHDHYTCMIDILS-RAGRLEEAKSFINKMPF---------PPDAIGWATL 450 (647)
Q Consensus 383 l~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~---------~p~~~~~~~l 450 (647)
+..+.+.|-+..|.++.+-+. .+.| |+.....+||.|+ ++++++--+++.+.... -|+ ..|+.-
T Consensus 110 i~~L~~RG~~rTAlE~~KlLl---sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn-~a~S~a 185 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLL---SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN-FAFSIA 185 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHH---hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc-HHHHHH
Confidence 345666777777777766665 3333 3444445566654 66666666666655421 122 223222
Q ss_pred HHHHHhcCCh---------------hHHHHHHHHHhccCC
Q 006388 451 LSSCRIHGNV---------------EIGKWAAESLLELDP 475 (647)
Q Consensus 451 l~~~~~~~~~---------------~~a~~~~~~~~~~~p 475 (647)
+ ++...++. +.|...+.+++..-|
T Consensus 186 L-A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 186 L-AYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred H-HHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 2 23333433 788888888888877
No 405
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=49.45 E-value=81 Score=26.48 Aligned_cols=35 Identities=17% Similarity=0.062 Sum_probs=27.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchh
Q 006388 446 GWATLLSSCRIHGNVEIGKWAAESLLELDPYNPAS 480 (647)
Q Consensus 446 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 480 (647)
...-|.-++.+.++++.+.+..+.+++.+|+|..+
T Consensus 73 ~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 73 CLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred hhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 33456667889999999999999999999987533
No 406
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=49.32 E-value=6.9e+02 Score=32.09 Aligned_cols=156 Identities=15% Similarity=0.041 Sum_probs=85.5
Q ss_pred HHHHHHHhcCChHHHHHHhccCC----CCCc-hH-HHHHHHHHHhcCChHHHHHHhhc-CCCCCeehHHHHHHHHHhCCC
Q 006388 82 PLVDMYAKLGLIYDAKRGFDELP----EKNI-VM-YNTMITGLLRRGLVEESRRLFRG-MKDKDSISWTTMITGLMQNGL 154 (647)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~~~----~~~~-~~-~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~ 154 (647)
.|..+--+|+.+.+|...+++-. +.+. .. +-.+...|..-+++|...-+... ...+ +...-|-.....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~---sl~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP---SLYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc---cHHHHHHHHHhhcc
Confidence 34445567888888888888732 1111 22 33333477777777776666553 2222 23344555666788
Q ss_pred hhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHH-HHHHHhcCCHHHHHHHH
Q 006388 155 EREAIDLFREMRLEGLAMD-QFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSAL-VDMYCKCKSIKYAESVF 232 (647)
Q Consensus 155 ~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~y~~~g~~~~A~~~~ 232 (647)
+..|...|+.+.+.+ |+ ..+++-+++.....+.++...-..+-.... ..+....++++ +.+--+.++++......
T Consensus 1465 ~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred HHHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 888888888887753 44 556776666666666666554433322221 12222222222 23334555555555544
Q ss_pred hcCCCCChhHHHHH
Q 006388 233 RTMAWKNVVSWTAM 246 (647)
Q Consensus 233 ~~~~~~~~~~~~~l 246 (647)
. ..+..+|.+.
T Consensus 1542 ~---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1542 S---DRNIEYWSVE 1552 (2382)
T ss_pred h---cccccchhHH
Confidence 4 4455556554
No 407
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=49.15 E-value=55 Score=27.86 Aligned_cols=64 Identities=19% Similarity=0.107 Sum_probs=44.8
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCCh
Q 006388 428 LEEAKSFINKMPFPPDAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKW 494 (647)
Q Consensus 428 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 494 (647)
-+.|.++.+-|+ .....-.........|++..|..+.+.++..+|+|...-...+++|.+.|.-
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 356777777775 2233344455567789999999999999999999988888888777665543
No 408
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=48.36 E-value=29 Score=33.34 Aligned_cols=59 Identities=17% Similarity=0.254 Sum_probs=33.2
Q ss_pred HcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHH
Q 006388 424 RAGRLEEAKSFINKM-PFPPD-AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYV 482 (647)
Q Consensus 424 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 482 (647)
+.|+.++|..+|+.+ ...|+ +....-+....-.+++.-+|...|-+++...|.|+.+.+
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 556666666666554 34443 333444444444556666666666666666666655443
No 409
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=48.08 E-value=45 Score=25.92 Aligned_cols=52 Identities=10% Similarity=0.048 Sum_probs=34.1
Q ss_pred HhcCChhHHHHHHHHHhccCCC----C-----chhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 455 RIHGNVEIGKWAAESLLELDPY----N-----PASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 455 ~~~~~~~~a~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
.+.||+..|.+.+.+....... . ..+...++.++...|++++|.+.+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3556677776666655543211 1 23345677788889999999999888764
No 410
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=46.27 E-value=4.5e+02 Score=29.14 Aligned_cols=182 Identities=18% Similarity=0.296 Sum_probs=103.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH----------HHHHHHHHhccCChHHHHHHHHHHHHh-C-CCcc
Q 006388 242 SWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFT----------LGSVISSCANLASLEEGTQFHGRSLVT-G-LISF 309 (647)
Q Consensus 242 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----------~~~ll~a~~~~~~~~~a~~~~~~~~~~-~-~~~~ 309 (647)
+-..|+-.|....+++..+++.+.++.. ||..- |.-.++---+-|+-++|....--+++. | +.||
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 4455666677777888888888877753 43221 222222223446666666665555443 2 3343
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHH
Q 006388 310 ITVSNALVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEV---TLIGVLSAC 386 (647)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~ 386 (647)
+||-||++ ++.|- +-+.|...+..+.|.+.|++.-+ +.|+.. -+..|+.+-
T Consensus 280 ---------m~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aa 333 (1226)
T KOG4279|consen 280 ---------MYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAA 333 (1226)
T ss_pred ---------eeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHh
Confidence 45556653 22221 11234445556778888888776 567655 344444433
Q ss_pred hcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 006388 387 SRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKMPFPPDAIGWATLLSSCRIHGNVEIGKWA 466 (647)
Q Consensus 387 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 466 (647)
.+ .++...++ .. .--.|-.+++|.|.++.-.++|+-. ..+.+-.-.+++.+|.++
T Consensus 334 G~--~Fens~El----q~---------IgmkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiqA 388 (1226)
T KOG4279|consen 334 GE--HFENSLEL----QQ---------IGMKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQA 388 (1226)
T ss_pred hh--hccchHHH----HH---------HHHHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHHH
Confidence 21 11111111 00 1123445678999988888777643 334555567889999999
Q ss_pred HHHHhccCCCC
Q 006388 467 AESLLELDPYN 477 (647)
Q Consensus 467 ~~~~~~~~p~~ 477 (647)
.+.+.++.|+.
T Consensus 389 ae~mfKLk~P~ 399 (1226)
T KOG4279|consen 389 AEMMFKLKPPV 399 (1226)
T ss_pred HHHHhccCCce
Confidence 99999999864
No 411
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=45.96 E-value=55 Score=20.17 Aligned_cols=19 Identities=11% Similarity=-0.064 Sum_probs=9.3
Q ss_pred HHHHHHHHhcCChhHHHHH
Q 006388 448 ATLLSSCRIHGNVEIGKWA 466 (647)
Q Consensus 448 ~~ll~~~~~~~~~~~a~~~ 466 (647)
-++...+-..|++++|+.+
T Consensus 5 y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 3444444555555555555
No 412
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=45.91 E-value=1.9e+02 Score=24.71 Aligned_cols=49 Identities=12% Similarity=0.198 Sum_probs=26.6
Q ss_pred ChhhHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 006388 340 DEVSWTALVSGYAKFGK-ANETIDLFEKMLSHGLKPDEVTLIGVLSACSR 388 (647)
Q Consensus 340 d~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 388 (647)
+..+|.+++.+..+..- ---+..+|.-|++.+.+++..-|..++.+|.+
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 44456666655544333 22345556666655556666666666665554
No 413
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=45.60 E-value=88 Score=20.73 Aligned_cols=33 Identities=15% Similarity=0.288 Sum_probs=22.3
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006388 352 AKFGKANETIDLFEKMLSHGLKPDEVTLIGVLS 384 (647)
Q Consensus 352 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 384 (647)
.+.|-.+++..++++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 456666677777777777777777666665554
No 414
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=45.39 E-value=28 Score=28.99 Aligned_cols=33 Identities=24% Similarity=0.395 Sum_probs=25.3
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 006388 150 MQNGLEREAIDLFREMRLEGLAMDQFTFGSVLTAC 184 (647)
Q Consensus 150 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~ 184 (647)
-..|.-.+|-.+|.+|++.|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3446677899999999999998886 66666554
No 415
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=45.03 E-value=4.6e+02 Score=28.88 Aligned_cols=177 Identities=13% Similarity=0.085 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHH-CCCCCCC--cchHHHHHHHHh-CCCChHHHHHHHHHHHHhCCCCch-----hhHHHHHHHHHhcCCh
Q 006388 23 NDAVKVYNLMLK-DGLGNLS--RITFSTMLIMSS-SRRCVDLGRQIHGHILKFGFGSYV-----FVGSPLVDMYAKLGLI 93 (647)
Q Consensus 23 ~~A~~~~~~m~~-~g~~~~~--~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~g~~~~~-----~~~~~li~~~~~~g~~ 93 (647)
..|++.++...+ ... +|. ..++..+...+. ...++++|+..+++.....-.++. .....++..|.+.+..
T Consensus 38 ~~ai~CL~~~~~~~~l-~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKL-SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHhccCCC-CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 356777777764 333 442 335555566654 667899999988877654322221 1233556677776655
Q ss_pred HHHHHHhccCCC----CCchHHH----HH-HHHHHhcCChHHHHHHhhcCCC-----CC--eehHHHHHHHH--HhCCCh
Q 006388 94 YDAKRGFDELPE----KNIVMYN----TM-ITGLLRRGLVEESRRLFRGMKD-----KD--SISWTTMITGL--MQNGLE 155 (647)
Q Consensus 94 ~~A~~~~~~~~~----~~~~~~~----~l-i~~~~~~g~~~~A~~~~~~~~~-----~~--~~~~~~li~~~--~~~g~~ 155 (647)
. |.+..++..+ .....|. -+ +..+...++...|.+.++.+.. .| +..+-.++.+. .+.+.+
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 5 7777766542 1111222 22 2222233788888888876643 12 23333444443 345667
Q ss_pred hHHHHHHHHHHHCCC---------CCChhhHHHHHHHHh--cCCChHHHHHHHHHHH
Q 006388 156 REAIDLFREMRLEGL---------AMDQFTFGSVLTACG--GLLALEEGKQIHAFII 201 (647)
Q Consensus 156 ~~A~~~~~~m~~~g~---------~pd~~t~~~ll~~~~--~~~~~~~a~~~~~~~~ 201 (647)
+++++.++++..... .|-..+|..++..++ ..|+++.+.+.+.++.
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 788888877743221 234456666666654 5567667766655554
No 416
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=43.58 E-value=4.7e+02 Score=28.52 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=17.9
Q ss_pred cccHHHHHHHHHcCCChhHHHHHHHHH
Q 006388 6 GVSWNLLISGHASHGSVNDAVKVYNLM 32 (647)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~A~~~~~~m 32 (647)
..-|+ .+..+.-.|.+++|.+++...
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 44466 577777889999999988543
No 417
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=43.54 E-value=75 Score=28.72 Aligned_cols=37 Identities=16% Similarity=0.101 Sum_probs=30.8
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 006388 439 PFPPDAIGWATLLSSCRIHGNVEIGKWAAESLLELDP 475 (647)
Q Consensus 439 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 475 (647)
...|++.++..++.++...|+.++|.+..+++..+-|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3467888888888888888888888888888888888
No 418
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=43.20 E-value=83 Score=20.84 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=19.0
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 006388 150 MQNGLEREAIDLFREMRLEGLAMDQFTFGSVLT 182 (647)
Q Consensus 150 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 182 (647)
.+.|-..++..++++|.+.|+..+...+..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 445555566666666666666555555554443
No 419
>PF13934 ELYS: Nuclear pore complex assembly
Probab=42.81 E-value=2.9e+02 Score=25.82 Aligned_cols=107 Identities=20% Similarity=0.204 Sum_probs=64.4
Q ss_pred hHHHHHHHHH--HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHH
Q 006388 343 SWTALVSGYA--KFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMID 420 (647)
Q Consensus 343 ~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 420 (647)
.|...+.||. .++++++|++++-.- .+.|+... -++.++...|+.+.|..+++.+. ....+.+....+..
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~~ 149 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFPD--KILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYFV 149 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccHH--HHHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHHH
Confidence 3445566654 456777777776321 22333222 36677777889999998887652 22223344444444
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 006388 421 ILSRAGRLEEAKSFINKMPFPPDAIGWATLLSSCRIHG 458 (647)
Q Consensus 421 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~ 458 (647)
. ..+|.+.||..+.+..+-+-....|..++..|....
T Consensus 150 ~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 150 A-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred H-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 4 567889999988888753222457777777776544
No 420
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=41.68 E-value=2.2e+02 Score=24.30 Aligned_cols=52 Identities=12% Similarity=0.156 Sum_probs=40.8
Q ss_pred CChhHHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 006388 238 KNVVSWTAMLVGYGQNGC-SEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLA 289 (647)
Q Consensus 238 ~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 289 (647)
.+..+|++++.+..+..- ---+..+|.-|++.+.+++..-|..++.+|.+..
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~ 129 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGY 129 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Confidence 355688888888866655 3456788999998888999999999999887653
No 421
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=41.62 E-value=37 Score=25.81 Aligned_cols=29 Identities=10% Similarity=0.142 Sum_probs=12.6
Q ss_pred CChHHHHHHhccCCCCCchHHHHHHHHHH
Q 006388 91 GLIYDAKRGFDELPEKNIVMYNTMITGLL 119 (647)
Q Consensus 91 g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 119 (647)
.+.++|.++++.++.++..+|..+..++-
T Consensus 44 tr~~q~~~LLd~L~~RG~~AF~~F~~aL~ 72 (84)
T cd08326 44 SRRDQARQLLIDLETRGKQAFPAFLSALR 72 (84)
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34444444444444444444444333333
No 422
>PHA02875 ankyrin repeat protein; Provisional
Probab=41.27 E-value=4.2e+02 Score=27.29 Aligned_cols=233 Identities=12% Similarity=-0.002 Sum_probs=121.9
Q ss_pred hCCCChHHHHHHHHHHHHhCCCCchhh--HHHHHHHHHhcCChHHHHHHhccCCCCCch--HHHHHHHHHHhcCChHHHH
Q 006388 53 SSRRCVDLGRQIHGHILKFGFGSYVFV--GSPLVDMYAKLGLIYDAKRGFDELPEKNIV--MYNTMITGLLRRGLVEESR 128 (647)
Q Consensus 53 ~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~ 128 (647)
...|+.+.+ +.+++.|..++... ..+.+...++.|+.+-+.-+++.-..++.. ...+-+...++.|+.+.+.
T Consensus 10 ~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~ 85 (413)
T PHA02875 10 ILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVE 85 (413)
T ss_pred HHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHH
Confidence 344565444 44455676655432 344566667888888777777654433322 1234466677889999988
Q ss_pred HHhhcCCCC----CeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhh--HHHHHHHHhcCCChHHHHHHHHHHHH
Q 006388 129 RLFRGMKDK----DSISWTTMITGLMQNGLEREAIDLFREMRLEGLAMDQFT--FGSVLTACGGLLALEEGKQIHAFIIR 202 (647)
Q Consensus 129 ~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~ 202 (647)
.+++.-... +..-++ .+...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+... .+++
T Consensus 86 ~Ll~~~~~~~~~~~~~g~t-pL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~----~Ll~ 156 (413)
T PHA02875 86 ELLDLGKFADDVFYKDGMT-PLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIE----LLID 156 (413)
T ss_pred HHHHcCCcccccccCCCCC-HHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH----HHHh
Confidence 888764322 111223 33334455665 45555566676665332 123344444567765544 4445
Q ss_pred cCCCCchh--HHHHHHHHHHhcCCHHHHHHHHhcCCCCChh---HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-
Q 006388 203 NDHKDNVF--VGSALVDMYCKCKSIKYAESVFRTMAWKNVV---SWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDF- 276 (647)
Q Consensus 203 ~g~~~~~~--~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~- 276 (647)
.|..++.. ...+.+...+..|+.+-+..+++.-...+.. ...+.+...+..|+.+ +.+-+.+.|..|+..
T Consensus 157 ~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~~~ 232 (413)
T PHA02875 157 HKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNIMF 232 (413)
T ss_pred cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcchHh
Confidence 55443321 1223445556678888777777765444322 1224444445566654 344455667666543
Q ss_pred -------HHHHHHHHHhccCChHHHHHHHHHHH
Q 006388 277 -------TLGSVISSCANLASLEEGTQFHGRSL 302 (647)
Q Consensus 277 -------t~~~ll~a~~~~~~~~~a~~~~~~~~ 302 (647)
|...++..++.....+....+...+.
T Consensus 233 ~~~~~~~t~l~~~~~~~~~~~~~~~~~li~~i~ 265 (413)
T PHA02875 233 MIEGEECTILDMICNMCTNLESEAIDALIADIA 265 (413)
T ss_pred hcCCCchHHHHHHHhhcCCcccHHHHHHHHHHH
Confidence 23333333333344444444554443
No 423
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=40.84 E-value=3.8e+02 Score=26.64 Aligned_cols=62 Identities=10% Similarity=-0.078 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHH
Q 006388 23 NDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSPLVDMY 87 (647)
Q Consensus 23 ~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 87 (647)
+.-+.+|++.++.+ +.+...+...|..+.+..+.+...+-++.++... +.+...+...++..
T Consensus 48 E~klsilerAL~~n--p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~ 109 (321)
T PF08424_consen 48 ERKLSILERALKHN--PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFR 109 (321)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHH
Confidence 44556666666664 5566666666676766666666666666666653 33455555555543
No 424
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=40.63 E-value=1.4e+02 Score=29.40 Aligned_cols=89 Identities=13% Similarity=0.113 Sum_probs=64.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-C---CCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhh
Q 006388 415 YTCMIDILSRAGRLEEAKSFINKM-P---FPPD--AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIY 488 (647)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~~-~---~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 488 (647)
|.-=.+-|.+..++..|.+.|.+. . -.|| .+.|+.-..+-...||+..++.-..+++..+|.+...|..=+.++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 333445567778888888888765 1 2343 566766666667789999999999999999999888888777777
Q ss_pred hhCCChhHHHHHHHH
Q 006388 489 ASKGKWDHVSQLRRT 503 (647)
Q Consensus 489 ~~~g~~~~a~~~~~~ 503 (647)
....++++|....++
T Consensus 164 ~eLe~~~~a~nw~ee 178 (390)
T KOG0551|consen 164 LELERFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHHHHHhh
Confidence 777776666555544
No 425
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=40.63 E-value=38 Score=23.95 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=10.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHH
Q 006388 347 LVSGYAKFGKANETIDLFEKML 368 (647)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~m~ 368 (647)
+|.+|.+.|++++|.++.+++.
T Consensus 29 vI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 4445555555555555444443
No 426
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=40.60 E-value=4.4e+02 Score=27.31 Aligned_cols=123 Identities=11% Similarity=0.017 Sum_probs=53.6
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006388 206 KDNVFVGSALVDMYCKCKSIKYAESVFRTMAWKNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSC 285 (647)
Q Consensus 206 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 285 (647)
.++..+-..-+.+++..+..+..-.+-.-....|...-..-+.+....|. .+|...+..... .|+..+...+....
T Consensus 158 d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~---~~g~~~~~~l~~~l 233 (410)
T TIGR02270 158 HEDALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQV---LEGGPHRQRLLVLL 233 (410)
T ss_pred CCCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHh---ccCccHHHHHHHHH
Confidence 34444444455555555543333222222334455554555555555555 455555444222 12222222222222
Q ss_pred hccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 006388 286 ANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNV 338 (647)
Q Consensus 286 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 338 (647)
...+. +.+...+..+.+. + .+-...+.+.++.|+...+.-+.+.|..
T Consensus 234 al~~~-~~a~~~L~~ll~d---~--~vr~~a~~AlG~lg~p~av~~L~~~l~d 280 (410)
T TIGR02270 234 AVAGG-PDAQAWLRELLQA---A--ATRREALRAVGLVGDVEAAPWCLEAMRE 280 (410)
T ss_pred HhCCc-hhHHHHHHHHhcC---h--hhHHHHHHHHHHcCCcchHHHHHHHhcC
Confidence 22222 2333333333322 1 1444556666666666666666655543
No 427
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=40.32 E-value=52 Score=31.81 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006388 242 SWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSV 281 (647)
Q Consensus 242 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 281 (647)
-||..|....+.|+.++|+.++++.++.|+.--..||...
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 3678999999999999999999999999876555555443
No 428
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=39.84 E-value=49 Score=31.85 Aligned_cols=51 Identities=20% Similarity=0.183 Sum_probs=44.1
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHH
Q 006388 454 CRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTM 504 (647)
Q Consensus 454 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 504 (647)
..+.|+.++|..+|+.++.+.|.++.+...++.......++-+|-+++-+.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A 176 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKA 176 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhee
Confidence 457899999999999999999999999998888888788888888777643
No 429
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=39.31 E-value=59 Score=31.47 Aligned_cols=41 Identities=15% Similarity=0.273 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006388 343 SWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVL 383 (647)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 383 (647)
-||..|..-.+.||+++|+.++++.++.|+.--..||...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 46788888999999999999999999988766666665543
No 430
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=38.98 E-value=12 Score=26.61 Aligned_cols=21 Identities=24% Similarity=0.529 Sum_probs=16.5
Q ss_pred ceEEEecCCccccccCcccCC
Q 006388 623 REILVRDAVRFHLFKNGECSC 643 (647)
Q Consensus 623 ~~~~~~~~~~~h~~~~g~csc 643 (647)
..|=+.|.+..|+|+||+-+-
T Consensus 8 ksi~LkDGstvyiFKDGKMam 28 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAM 28 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEE
T ss_pred eeEecCCCCEEEEEcCCceeh
Confidence 457788999999999998653
No 431
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=38.10 E-value=1.2e+02 Score=26.86 Aligned_cols=52 Identities=12% Similarity=-0.119 Sum_probs=30.5
Q ss_pred CCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCC
Q 006388 137 KDSISWTTMITGLMQNGLEREAIDLFREMRLEGLAMDQFTFGSVLTACGGLL 188 (647)
Q Consensus 137 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~ 188 (647)
+....-..++..+...+..-.|.++++.+.+.+..++..|....|..+...|
T Consensus 23 R~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 23 RLTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3444445555655555566667777777776666666666555555554444
No 432
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=37.95 E-value=1.9e+02 Score=22.33 Aligned_cols=62 Identities=24% Similarity=0.163 Sum_probs=33.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCC--CchhHHHHHHhhhhCCChh-HHHHHHHHH
Q 006388 443 DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPY--NPASYVLLSSIYASKGKWD-HVSQLRRTM 504 (647)
Q Consensus 443 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~-~a~~~~~~m 504 (647)
|....-.+...+...|+++.|...+-.+++.+|. +...-..|+.++...|.-+ .+.+++++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 3455556666666777777777776666666553 3555556666666655532 444444444
No 433
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=37.92 E-value=1.3e+02 Score=25.70 Aligned_cols=46 Identities=20% Similarity=0.177 Sum_probs=24.7
Q ss_pred ehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 006388 140 ISWTTMITGLMQNGLEREAIDLFREMRLEGLAMDQFTFGSVLTACG 185 (647)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~ 185 (647)
..-..++..+.+.+..-.|.++++++.+.+...+..|.-..|+.+.
T Consensus 21 ~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~ 66 (145)
T COG0735 21 PQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLE 66 (145)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHH
Confidence 3444555666655555666666666666555544444444444333
No 434
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=37.91 E-value=1.1e+02 Score=32.39 Aligned_cols=133 Identities=16% Similarity=0.110 Sum_probs=87.1
Q ss_pred CCCHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHH-cCCHHHHHHHHHhC-CCCC--Chhh
Q 006388 373 KPDEVTLIGVLSACSRAG--LVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSR-AGRLEEAKSFINKM-PFPP--DAIG 446 (647)
Q Consensus 373 ~p~~~t~~~ll~a~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~-~~~p--~~~~ 446 (647)
-|+..|..+++.-...-- .-+-|-.++..|.+ .+.|--...| +..+|.| .|+...|...+..+ ...| ..+.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 466666666555443322 23345555555532 3344222222 2233443 57888888877766 2233 2334
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhCC
Q 006388 447 WATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREKG 508 (647)
Q Consensus 447 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 508 (647)
.-.|.....+.|....|-.++.+.+.+....|.++..++++|....+++.|.+.++...+..
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 45566677777777889999999888888888999999999999999999999998876643
No 435
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=37.19 E-value=2.1e+02 Score=25.57 Aligned_cols=54 Identities=15% Similarity=0.334 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhcCCCcC-hHHH-----HHHHHHHHHcCCHHHHHHHHHhCCCCCChh
Q 006388 392 VEKGRHYFEIMVKEYGIRPI-HDHY-----TCMIDILSRAGRLEEAKSFINKMPFPPDAI 445 (647)
Q Consensus 392 ~~~a~~~~~~~~~~~~~~p~-~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~p~~~ 445 (647)
++.|+.+|+.+.++...+-+ .+.. ...+-.|.+.|.+++|.+++++.-..|+..
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~ 144 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPESQ 144 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCch
Confidence 45566666666554321101 0111 122345666777777777776663344433
No 436
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=36.77 E-value=2.2e+02 Score=23.58 Aligned_cols=43 Identities=7% Similarity=0.080 Sum_probs=33.9
Q ss_pred hHHHHHHHHHhc--cCCCCchhHHHHHHhhhhCCChhHHHHHHHH
Q 006388 461 EIGKWAAESLLE--LDPYNPASYVLLSSIYASKGKWDHVSQLRRT 503 (647)
Q Consensus 461 ~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 503 (647)
+.+..+|+.+.. ++-.-+..|...+..+...|++++|.++++.
T Consensus 80 ~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 378888887775 4455678889999999999999999999875
No 437
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=36.65 E-value=3.6e+02 Score=25.25 Aligned_cols=55 Identities=7% Similarity=0.263 Sum_probs=37.7
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006388 330 HRLFNEMNVRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSAC 386 (647)
Q Consensus 330 ~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 386 (647)
..+|+-..+|.+.....|+..+. .+++++|.+.+.++.+.|..|.... +++.+.+
T Consensus 228 enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Dii-~~~FRv~ 282 (333)
T KOG0991|consen 228 ENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDII-TTLFRVV 282 (333)
T ss_pred hhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHHH-HHHHHHH
Confidence 44555555777777777777654 4678899999999999888887542 3334444
No 438
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=35.92 E-value=1.9e+02 Score=24.01 Aligned_cols=45 Identities=13% Similarity=0.061 Sum_probs=33.3
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 006388 158 AIDLFREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIR 202 (647)
Q Consensus 158 A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 202 (647)
..+-++....-.+.|+.......|++|.+.+++..|.++++-+..
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344455555566788888888888888888888888888877654
No 439
>PRK09169 hypothetical protein; Validated
Probab=34.67 E-value=1.1e+03 Score=30.34 Aligned_cols=463 Identities=11% Similarity=0.012 Sum_probs=244.4
Q ss_pred cchHHHHHHHHhCCCChHHHHHHHHHHHHhC-----CCCchhhHHHHHHHHHhcCChHHHHHHhccC----CC-------
Q 006388 42 RITFSTMLIMSSSRRCVDLGRQIHGHILKFG-----FGSYVFVGSPLVDMYAKLGLIYDAKRGFDEL----PE------- 105 (647)
Q Consensus 42 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~------- 105 (647)
...+..+.+.+++..+.....+....+...- -..+......++++++|=.+-..+...-+.+ ..
T Consensus 122 ~~~~a~l~n~lsK~~d~~aC~~a~a~ia~q~~~~~~~~l~~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~~a 201 (2316)
T PRK09169 122 LAQLAHLGNKLSKYPDRPACMAAIAWIAGQLLDALREALDAISFALLLNALSKWPDNTDCQTAAEQLADRLASDSRLLQA 201 (2316)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCHHHHHh
Confidence 3455556666655555444333333332211 1234455566677777655444433322222 11
Q ss_pred CCchHHHHHHHHHHhcCChHHHHHHhhcCCC-----------CCeehHHHHHHHHHhCCChhHHHHHHHHH---HHC--C
Q 006388 106 KNIVMYNTMITGLLRRGLVEESRRLFRGMKD-----------KDSISWTTMITGLMQNGLEREAIDLFREM---RLE--G 169 (647)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~--g 169 (647)
-|......+++++.|.-+-......-..+.. -+......+++++++-.+-+.+...-..+ +.. +
T Consensus 202 l~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l~~~l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~ 281 (2316)
T PRK09169 202 MDAQEVANALNALSKWPDSPRCRNAAERLAERLADEPGLLQSLRAQEVALLLNALSKWPDDEACRQAAEALAARLAREPG 281 (2316)
T ss_pred cchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHHHHhcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChh
Confidence 1333445566666655554443333222211 13455677888888866554433322222 111 1
Q ss_pred --CCCChhhHHHHHHHHhcCCChHHHHHHHHHHH----H---cCCCCchhHHHHHHHHHHhcCCHHHHHH----HHhcCC
Q 006388 170 --LAMDQFTFGSVLTACGGLLALEEGKQIHAFII----R---NDHKDNVFVGSALVDMYCKCKSIKYAES----VFRTMA 236 (647)
Q Consensus 170 --~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~----~---~g~~~~~~~~~~li~~y~~~g~~~~A~~----~~~~~~ 236 (647)
...|...+...++++++..+-+...+....+- . ..-..+..-....+++++|..+.+.+.. +-+++.
T Consensus 282 lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~~l~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~ 361 (2316)
T PRK09169 282 LRLALDPQGVANALNALSKWPDTEACRQAAEALAERLAQERGLLQAMNAQAVANALNALSKWPDEEACRAAAEALAARLA 361 (2316)
T ss_pred hhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 22466677888999998876554333322221 1 1112344444557788888887665332 222221
Q ss_pred -------CCChhHHHHHHHHHHhcCChhH----HHHHHHHHHHC-C--CCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 006388 237 -------WKNVVSWTAMLVGYGQNGCSEE----AVKIFCNMQRN-G--IEPDDFTLGSVISSCANLASLEEGTQFHGRSL 302 (647)
Q Consensus 237 -------~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~-g--~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 302 (647)
.-|..-....+.++.+-++.+. |..+...+... + -..|..-....+.+|++.+.-+...+....+.
T Consensus 362 ~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~rL~~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA 441 (2316)
T PRK09169 362 RDAGLRRALNAQELANALNALSKWPDEEACRAAAEALAARLARDAGLRAALNAQGVANALNALSKWPGAEACRQAALALA 441 (2316)
T ss_pred hChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHhchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 1255566677888888766442 33344433332 1 13567788889999998877664433332221
Q ss_pred H---h----CCCcchhHHHHHHHHHHhcCCHHH----HHHHHhhcCC-------CChhhHHHHHHHHHHcCChHHHHH--
Q 006388 303 V---T----GLISFITVSNALVTFYGKCGNIED----SHRLFNEMNV-------RDEVSWTALVSGYAKFGKANETID-- 362 (647)
Q Consensus 303 ~---~----~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~-------~d~~~~~~li~~~~~~g~~~~A~~-- 362 (647)
. . .-..+..-....+.+++|-++-+. +..+...+.. -+..-....+.++++-++.+....
T Consensus 442 ~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~~LA~rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA 521 (2316)
T PRK09169 442 ARLAADARLRNALSAQELANALNALSKWPDEAACRRAAEALAARLAGDAELRQALDAQGLANALNALSKWPDSDACRAAA 521 (2316)
T ss_pred HHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcChhhhhhcChHHHHHHHHHHhcCCccHHHHHHH
Confidence 1 1 012334445567777887776442 2333333321 145556677888888777654322
Q ss_pred --HHHHHHHC---CCCCCHHHHHHHHHHHhcCCcHHHHH----HHHHHHHHhc--CCCcChHHHHHHHHHHHHcCCHHH-
Q 006388 363 --LFEKMLSH---GLKPDEVTLIGVLSACSRAGLVEKGR----HYFEIMVKEY--GIRPIHDHYTCMIDILSRAGRLEE- 430 (647)
Q Consensus 363 --~~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~----~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~- 430 (647)
+..++... --.-|..-+...+.++++..+.+.+. .+...+..+- .-..+.......+.++++-+.-..
T Consensus 522 ~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~ac 601 (2316)
T PRK09169 522 EALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAEALAARLARRPDLRSALNAQGLANLLNALSKWPDEDAC 601 (2316)
T ss_pred HHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCchhH
Confidence 33322221 12346667788899999987644332 2333332210 112355677788888988775432
Q ss_pred ---HHHHHHhC----C--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHhc---cCC-----CCchhHHHHHHhhhhCCC
Q 006388 431 ---AKSFINKM----P--FPPDAIGWATLLSSCRIHGNVEIGKWAAESLLE---LDP-----YNPASYVLLSSIYASKGK 493 (647)
Q Consensus 431 ---A~~~~~~~----~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~p-----~~~~~~~~l~~~~~~~g~ 493 (647)
|..+.... + ..-+..-+..+++++.+-.+.+....+...+.+ .+| -++.-..++++++++-.+
T Consensus 602 r~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~~~cr~Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnALSKWp~ 681 (2316)
T PRK09169 602 RAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDEDDCRQAAEALAARLLRDAGLPRAFDAQGLANALNALSKWPD 681 (2316)
T ss_pred HHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcchhHHhcCcHHHHHHHHHHHhCCC
Confidence 33333333 1 123566788889999988777665554443332 111 255667778888888887
Q ss_pred hhHHHHHHHHH
Q 006388 494 WDHVSQLRRTM 504 (647)
Q Consensus 494 ~~~a~~~~~~m 504 (647)
...+.+....+
T Consensus 682 ~~~c~~Aa~aL 692 (2316)
T PRK09169 682 EAACRAAALAL 692 (2316)
T ss_pred cHHHHHHHHHH
Confidence 66655555444
No 440
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=34.48 E-value=2e+02 Score=23.64 Aligned_cols=64 Identities=19% Similarity=0.106 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHh-------ccCCCCchhHH----HHHHhhhhCCChhHHHHHHHHHHh
Q 006388 443 DAIGWATLLSSCRIHGNVEIGKWAAESLL-------ELDPYNPASYV----LLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 443 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~~----~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
|...+..|-.++...|++++++...++.+ +++.+....|. +-+.++...|+.++|.+.|+..-+
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
No 441
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=34.42 E-value=61 Score=22.92 Aligned_cols=26 Identities=31% Similarity=0.402 Sum_probs=20.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHH
Q 006388 142 WTTMITGLMQNGLEREAIDLFREMRL 167 (647)
Q Consensus 142 ~~~li~~~~~~g~~~~A~~~~~~m~~ 167 (647)
.-.+|.+|.+.|++++|.+...++.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34578899999999999999888765
No 442
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=34.10 E-value=2.6e+02 Score=23.47 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=13.9
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCC
Q 006388 47 TMLIMSSSRRCVDLGRQIHGHILKFGF 73 (647)
Q Consensus 47 ~ll~~~~~~~~~~~a~~~~~~~~~~g~ 73 (647)
.++--+...|+++.|..+.+.++++|.
T Consensus 53 ~~mvW~~D~Gd~~~AL~~a~yAi~~~l 79 (132)
T PF05944_consen 53 TVMVWLFDVGDFDGALDIAEYAIEHGL 79 (132)
T ss_pred hhHhhhhcccCHHHHHHHHHHHHHcCC
Confidence 344444555555555555555555553
No 443
>PRK13342 recombination factor protein RarA; Reviewed
Probab=33.50 E-value=5.6e+02 Score=26.51 Aligned_cols=47 Identities=19% Similarity=0.181 Sum_probs=32.1
Q ss_pred hHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC
Q 006388 343 SWTALVSGYAK---FGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRA 389 (647)
Q Consensus 343 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 389 (647)
....+++++.+ .++.+.|+..+..|.+.|..|....-..+..++...
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 34445555554 578999999999999999888766555555454433
No 444
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=32.98 E-value=5.4e+02 Score=26.20 Aligned_cols=26 Identities=12% Similarity=-0.169 Sum_probs=15.5
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC
Q 006388 350 GYAKFGKANETIDLFEKMLSHGLKPD 375 (647)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~~g~~p~ 375 (647)
.+.+.+++..|.++|+++....+.|+
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~ 164 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAV 164 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChh
Confidence 34556666677777766666544433
No 445
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=32.91 E-value=1.1e+02 Score=29.66 Aligned_cols=76 Identities=11% Similarity=0.043 Sum_probs=48.3
Q ss_pred CcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHH-HHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHH
Q 006388 409 RPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWAT-LLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLL 484 (647)
Q Consensus 409 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 484 (647)
.-|+..|...+.-..+.|.+.+...++.+. ...| |+..|-. --.-+..+++++.+..++.+.+.++|++|..+...
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 344555555444444555666666666655 2334 4666633 22335678899999999999999999988776543
No 446
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=32.24 E-value=4.4e+02 Score=24.85 Aligned_cols=79 Identities=9% Similarity=-0.044 Sum_probs=35.3
Q ss_pred hcCCHHHHHHHHhhcC--CCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHhcCCcHHHHHH
Q 006388 322 KCGNIEDSHRLFNEMN--VRDE-VSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIG-VLSACSRAGLVEKGRH 397 (647)
Q Consensus 322 ~~g~~~~A~~~~~~~~--~~d~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~~g~~~~a~~ 397 (647)
....++.|...+.+.. .|.+ .-|+.=+..+.+..+++.+..--.+.++ +.||.+--.. +-.+......+++|+.
T Consensus 22 ~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHHH
Confidence 3344555555554433 3333 2234444555555555555544444444 3455442222 2223344445555555
Q ss_pred HHHHH
Q 006388 398 YFEIM 402 (647)
Q Consensus 398 ~~~~~ 402 (647)
.+.+.
T Consensus 100 ~Lqra 104 (284)
T KOG4642|consen 100 VLQRA 104 (284)
T ss_pred HHHHH
Confidence 54443
No 447
>PF15161 Neuropep_like: Neuropeptide-like
Probab=32.06 E-value=15 Score=24.74 Aligned_cols=18 Identities=28% Similarity=0.759 Sum_probs=12.8
Q ss_pred eccccCCCccchhhhhhhh
Q 006388 602 KNLRVCSDCHNATKYISKI 620 (647)
Q Consensus 602 ~~~~~~~~~~~~~~~~s~~ 620 (647)
-.-|-|.|||.+. |+.+.
T Consensus 11 aesRPCVDCHAFe-fmqRA 28 (65)
T PF15161_consen 11 AESRPCVDCHAFE-FMQRA 28 (65)
T ss_pred CCCCCchhhHHHH-HHHHH
Confidence 4568999999765 66543
No 448
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=31.40 E-value=2.5e+02 Score=30.44 Aligned_cols=60 Identities=20% Similarity=0.200 Sum_probs=31.9
Q ss_pred ehHHHHHHHHHhCCChh------HHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 006388 140 ISWTTMITGLMQNGLER------EAIDLFREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIR 202 (647)
Q Consensus 140 ~~~~~li~~~~~~g~~~------~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 202 (647)
..+|..|+.+.++|.++ .|.++++... +.-|..||..++.+..+...-..+.-++.+.+.
T Consensus 66 ~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 66 PMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALLCQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHHHHhhcChHhHHhccHHHHHHHH
Confidence 45666677777776653 3333333333 445777777777665544443444444444433
No 449
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=31.21 E-value=2.7e+02 Score=23.84 Aligned_cols=62 Identities=19% Similarity=0.204 Sum_probs=27.0
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCH
Q 006388 365 EKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRL 428 (647)
Q Consensus 365 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 428 (647)
+.+.+.|+++...- ..++..+...+..-.|.++++.+.+. +..-+..|--.-++.+...|-+
T Consensus 10 ~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~-~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 10 ERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREE-GPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHh-CCCCCHhHHHHHHHHHHHCCCE
Confidence 33444454444332 12334444444445566666665543 2222232222234555566653
No 450
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=31.19 E-value=5e+02 Score=25.21 Aligned_cols=69 Identities=14% Similarity=0.278 Sum_probs=35.2
Q ss_pred HHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-C---CCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 006388 400 EIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-P---FPPDAIGWATLLSSCRIHGNVEIGKWAAE 468 (647)
Q Consensus 400 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 468 (647)
+.+...++-.++..+...+++.+++.+++.+-.++++.. + ...|...|..++..-...|+......+.+
T Consensus 190 ~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 190 DFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 333344444555555555555555555555555555544 1 12245556666665555555554444433
No 451
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=31.15 E-value=82 Score=24.33 Aligned_cols=27 Identities=7% Similarity=0.215 Sum_probs=11.7
Q ss_pred HHHHHHhhcCCCCCeehHHHHHHHHHh
Q 006388 125 EESRRLFRGMKDKDSISWTTMITGLMQ 151 (647)
Q Consensus 125 ~~A~~~~~~~~~~~~~~~~~li~~~~~ 151 (647)
+++.++++.++.+...+|..+..++-.
T Consensus 51 ~k~~~Lld~L~~RG~~AF~~F~~aL~~ 77 (90)
T cd08332 51 SQNVALLNLLPKRGPRAFSAFCEALRE 77 (90)
T ss_pred HHHHHHHHHHHHhChhHHHHHHHHHHh
Confidence 334444444444444444444444433
No 452
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=31.12 E-value=4e+02 Score=24.09 Aligned_cols=18 Identities=17% Similarity=0.431 Sum_probs=14.1
Q ss_pred hhCCChhHHHHHHHHHHh
Q 006388 489 ASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 489 ~~~g~~~~a~~~~~~m~~ 506 (647)
.+.|+++.|.+.++-|.+
T Consensus 132 l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 467888888888888864
No 453
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=31.09 E-value=4.8e+02 Score=24.96 Aligned_cols=83 Identities=17% Similarity=0.168 Sum_probs=42.9
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 006388 308 SFITVSNALVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACS 387 (647)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 387 (647)
-++.....+...|.+.|++.+|+..|-.-..++...+..++.-....|...++ |...-..++ -|.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHH
Confidence 36777788888999999999998877544333332222222222222222222 111112222 345
Q ss_pred cCCcHHHHHHHHHHHHHh
Q 006388 388 RAGLVEKGRHYFEIMVKE 405 (647)
Q Consensus 388 ~~g~~~~a~~~~~~~~~~ 405 (647)
-.+++..|...++...+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 567888888877766654
No 454
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=30.91 E-value=3.1e+02 Score=22.73 Aligned_cols=43 Identities=19% Similarity=0.383 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhcCCCc-ChHHHHHHHHHHHHcCCHHHHHHHHHh
Q 006388 394 KGRHYFEIMVKEYGIRP-IHDHYTCMIDILSRAGRLEEAKSFINK 437 (647)
Q Consensus 394 ~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 437 (647)
.+.++|+.|... ++-- .+..|......+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~-~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSK-GIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHH-TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 566666666554 4433 345566666666777777777776653
No 455
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.82 E-value=54 Score=32.21 Aligned_cols=116 Identities=18% Similarity=0.186 Sum_probs=74.4
Q ss_pred cCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCChhHHHH
Q 006388 388 RAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPPD-AIGWATLLSSCRIHGNVEIGKW 465 (647)
Q Consensus 388 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~ 465 (647)
..|.++.|++.|...++ .-+|....|.--..++.+.++...|++=+... .+.|| ...|-.-..+-+..|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 45677788877777664 23444556666666777777777777766655 45565 3344444455666788888888
Q ss_pred HHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 466 AAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 466 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
.+..+.+++- +..+-..|-.+.-.+++.++-...+++..+
T Consensus 204 dl~~a~kld~-dE~~~a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 204 DLALACKLDY-DEANSATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHhccc-cHHHHHHHHHhccchhhhhhchhHHHHHHH
Confidence 8888888765 334444555666666666666666655543
No 456
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.64 E-value=1.1e+02 Score=22.91 Aligned_cols=34 Identities=9% Similarity=-0.060 Sum_probs=17.3
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHH
Q 006388 48 MLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSP 82 (647)
Q Consensus 48 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 82 (647)
++..+.+..-.++|.++.+.+.+.| ..+....+.
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~A~~ 70 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG-EITPEMAKA 70 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 3344444455556666666666665 344443333
No 457
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.95 E-value=8.8e+02 Score=27.70 Aligned_cols=130 Identities=15% Similarity=0.145 Sum_probs=87.4
Q ss_pred HHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHH
Q 006388 319 FYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHY 398 (647)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 398 (647)
....+|+++.|++.-.++. |...|..|+..-...|+.+-|...|++.+. |..|--.|.-.|+.++-.++
T Consensus 652 LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km 720 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKM 720 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHH
Confidence 3567899999988776654 566899999999999999999999988764 22233345556888887776
Q ss_pred HHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhc
Q 006388 399 FEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKMPFPPDAIGWATLLSSCRIHGNVEIGKWAAESLLE 472 (647)
Q Consensus 399 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 472 (647)
.+....+ -|... ....+ .-.|+.++-.++++..+.-|- .|. .-..||.-++|.++.+++-.
T Consensus 721 ~~iae~r----~D~~~--~~qna-lYl~dv~ervkIl~n~g~~~l--ayl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 721 MKIAEIR----NDATG--QFQNA-LYLGDVKERVKILENGGQLPL--AYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHhh----hhhHH--HHHHH-HHhccHHHHHHHHHhcCcccH--HHH----HHhhcCcHHHHHHHHHhhcc
Confidence 6555332 22211 11111 126889999999998875442 121 12457888889998888765
No 458
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=29.59 E-value=57 Score=24.33 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHhhHhcCcccCCccc
Q 006388 537 SDQIYAELEKLNRKMIKEGYVPDMSSV 563 (647)
Q Consensus 537 ~~~~~~~l~~l~~~m~~~g~~pd~~~~ 563 (647)
...+...+++..++++..|+.||...+
T Consensus 7 li~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 7 LIRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTT----EEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 345667788888999999999998665
No 459
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=29.53 E-value=2e+02 Score=21.93 Aligned_cols=40 Identities=13% Similarity=0.287 Sum_probs=25.0
Q ss_pred HhcCChHHHHHHhhcCCCCCeehHHHHHHHHHhCCChhHH
Q 006388 119 LRRGLVEESRRLFRGMKDKDSISWTTMITGLMQNGLEREA 158 (647)
Q Consensus 119 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 158 (647)
....+.++|.++++.++.+...+|.....++-..|...-|
T Consensus 41 ~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 41 AAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3444566666777777666666777777666666654433
No 460
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=29.37 E-value=2.3e+02 Score=24.98 Aligned_cols=61 Identities=11% Similarity=0.067 Sum_probs=33.2
Q ss_pred HHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHH
Q 006388 367 MLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLE 429 (647)
Q Consensus 367 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 429 (647)
+...|+++...-. .++..+......-.|.++++.+.+. +...+..|.---++.+.+.|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCEE
Confidence 3445665555433 3333333344455677777777654 44445444444456777777654
No 461
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=29.09 E-value=9.4e+02 Score=27.75 Aligned_cols=73 Identities=12% Similarity=0.084 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHH
Q 006388 359 ETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEA 431 (647)
Q Consensus 359 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 431 (647)
.-.+.|.++..-=-.-|..++..-..-....|++..|.+++..+.++.+-.++..+|..+++.+...|.-.-|
T Consensus 1214 ~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~H~~ 1286 (1304)
T KOG1114|consen 1214 SYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWNHLA 1286 (1304)
T ss_pred hHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCchHhH
Confidence 3344455544321122333444444445566888888888888888778888888888888888777765433
No 462
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.80 E-value=6.5e+02 Score=27.46 Aligned_cols=84 Identities=11% Similarity=0.041 Sum_probs=57.2
Q ss_pred HcCCHHHHHHHHHh-CCCCC-C------hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChh
Q 006388 424 RAGRLEEAKSFINK-MPFPP-D------AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWD 495 (647)
Q Consensus 424 ~~g~~~~A~~~~~~-~~~~p-~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 495 (647)
+..++..+.++|.. |..-| | ......|--.|....+.+.|.++++++-+.+|.++..-..+..+....|+-+
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se 445 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSE 445 (872)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchH
Confidence 34556666666643 22111 1 2234555555667778888888888888888888877777788888888888
Q ss_pred HHHHHHHHHHhC
Q 006388 496 HVSQLRRTMREK 507 (647)
Q Consensus 496 ~a~~~~~~m~~~ 507 (647)
+|..+.......
T Consensus 446 ~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 446 EALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHhh
Confidence 888887776543
No 463
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=28.54 E-value=2.1e+02 Score=27.05 Aligned_cols=18 Identities=22% Similarity=0.178 Sum_probs=8.6
Q ss_pred HHHHhCCChhHHHHHHHH
Q 006388 147 TGLMQNGLEREAIDLFRE 164 (647)
Q Consensus 147 ~~~~~~g~~~~A~~~~~~ 164 (647)
+.|...|++.+|+.-|+.
T Consensus 18 rl~l~~~~~~~Av~q~~~ 35 (247)
T PF11817_consen 18 RLYLWLNQPTEAVRQFRA 35 (247)
T ss_pred HHHHhCCCHHHHHHHHHH
Confidence 444445555555444433
No 464
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=28.31 E-value=6.6e+02 Score=25.68 Aligned_cols=56 Identities=9% Similarity=0.070 Sum_probs=37.2
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChh--hHHHHHHHHh--cCCChHHHHHHHHHHHHc
Q 006388 147 TGLMQNGLEREAIDLFREMRLEGLAMDQF--TFGSVLTACG--GLLALEEGKQIHAFIIRN 203 (647)
Q Consensus 147 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~--t~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 203 (647)
..+.+.+++..|.++|..+... +.++.. .+..+..+|. ..-++++|.+.++...+.
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455788999999999999876 555544 3344444443 445677787777776654
No 465
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=27.82 E-value=3.6e+02 Score=22.44 Aligned_cols=58 Identities=14% Similarity=0.044 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhh-HHHHHHHHHhcCChhHHHHHHHH
Q 006388 412 HDHYTCMIDILSRAGRLEEAKSFINKMPFPPDAIG-WATLLSSCRIHGNVEIGKWAAES 469 (647)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~ 469 (647)
..+-.++..++.-.|..++|.+++...+--++-.. =.-++..|....+-++...+-++
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34556666677777777777777777654333222 23456666666555554444433
No 466
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=27.05 E-value=6.4e+02 Score=25.11 Aligned_cols=125 Identities=14% Similarity=0.120 Sum_probs=81.1
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh------cCCcHHHHHHHHHHHHHhcCCCcChH
Q 006388 340 DEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACS------RAGLVEKGRHYFEIMVKEYGIRPIHD 413 (647)
Q Consensus 340 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~------~~g~~~~a~~~~~~~~~~~~~~p~~~ 413 (647)
|...|+- +-.++++.++++...++. |........|.+|- ..-++..-..+|+.+. .+.|++.
T Consensus 263 Dr~lW~r--------~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~---~~apSPv 330 (415)
T COG4941 263 DRSLWDR--------ALIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALE---QAAPSPV 330 (415)
T ss_pred chhhhhH--------HHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHH---HhCCCCe
Confidence 5566663 335688888888888764 88887777777653 2346777777777775 3455543
Q ss_pred H-HHHHHHHHHHcCCHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 006388 414 H-YTCMIDILSRAGRLEEAKSFINKMPFPPD----AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYN 477 (647)
Q Consensus 414 ~-~~~li~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 477 (647)
+ .|- .-++++..-.+.++..++...-+|. ...+..-...+.+.|..++|...|++++.+.++.
T Consensus 331 V~LNR-AVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ 398 (415)
T COG4941 331 VTLNR-AVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNA 398 (415)
T ss_pred EeehH-HHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCCh
Confidence 2 232 2234444456667777776643332 3344555566788999999999999999887754
No 467
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=26.91 E-value=1.1e+03 Score=27.66 Aligned_cols=124 Identities=9% Similarity=0.006 Sum_probs=65.3
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhc---CCCcCh--------HHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC--hhh
Q 006388 380 IGVLSACSRAGLVEKGRHYFEIMVKEY---GIRPIH--------DHYTCMIDILSRAGRLEEAKSFINKMPFPPD--AIG 446 (647)
Q Consensus 380 ~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~--------~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~--~~~ 446 (647)
..++-..+..|.++-+.+..+.+.+.+ ..+-+. .+|-.=+.++.....++++.+.+...+ |. ...
T Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 769 (932)
T PRK13184 692 ADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNTD--PTLILYA 769 (932)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhCC--HHHHHHH
Confidence 333334456677776666655554321 111111 112222445555566777776666553 33 233
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCC---chhHHHHHHhhhhCCChhHHHHHHHHHH
Q 006388 447 WATLLSSCRIHGNVEIGKWAAESLLELDPYN---PASYVLLSSIYASKGKWDHVSQLRRTMR 505 (647)
Q Consensus 447 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 505 (647)
+..+..-+..+++.+.-..+.+.+..-.+.. ......-+.+|.-..+|++|.+++....
T Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (932)
T PRK13184 770 FDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYP 831 (932)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCC
Confidence 4444444555666666555555554433321 2233445677778889999999986543
No 468
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=26.78 E-value=4.8e+02 Score=28.52 Aligned_cols=47 Identities=17% Similarity=0.063 Sum_probs=30.8
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHhcCCH
Q 006388 179 SVLTACGGLLALEEGKQIHAFIIRND--HKDNVFVGSALVDMYCKCKSI 225 (647)
Q Consensus 179 ~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~ 225 (647)
+++.+|...|++..+.++++...... -..-...+|..++-..+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 77888888888888888887776543 222234456666666666654
No 469
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=26.65 E-value=1.2e+02 Score=28.20 Aligned_cols=54 Identities=20% Similarity=0.215 Sum_probs=49.0
Q ss_pred HhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhCC
Q 006388 455 RIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREKG 508 (647)
Q Consensus 455 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 508 (647)
.+.++.+.+-+++.+++++-|+....|..++..-.+.|+.+.|.+.+++..+..
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 456888999999999999999999999999999999999999999999987743
No 470
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=26.52 E-value=6e+02 Score=24.67 Aligned_cols=59 Identities=7% Similarity=0.153 Sum_probs=40.6
Q ss_pred CcchhHHHHHHHHHHhcCCHHHHHHHHhhcC-----CCChhhHHHHHHHHHHcCChHHHHHHHH
Q 006388 307 ISFITVSNALVTFYGKCGNIEDSHRLFNEMN-----VRDEVSWTALVSGYAKFGKANETIDLFE 365 (647)
Q Consensus 307 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~d~~~~~~li~~~~~~g~~~~A~~~~~ 365 (647)
.++..+...+++.+++.+++.+-.++++... ..|...|..+|..-...|+..-...+..
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 4555666667777777777777777776644 3377788888888888888755444443
No 471
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.44 E-value=1e+03 Score=27.38 Aligned_cols=131 Identities=12% Similarity=0.170 Sum_probs=66.3
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 006388 141 SWTTMITGLMQNGLEREAIDLFREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYC 220 (647)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 220 (647)
-|..|+..|...|+.++|+++|.+.....-.-|.. ..+.-..+.+.+.+.+- ++..+.-...+ +.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~-------------~~~~~e~ii~YL~~l~~-~~~~Li~~y~~-wv 570 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSF-------------QLDGLEKIIEYLKKLGA-ENLDLILEYAD-WV 570 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccc-------------hhhhHHHHHHHHHHhcc-cchhHHHHHhh-hh
Confidence 58899999999999999999999987632101111 11111224444444442 22211111111 11
Q ss_pred hcCCHHHHHHHHhcCCCCChhHHH-HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 006388 221 KCKSIKYAESVFRTMAWKNVVSWT-AMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCA 286 (647)
Q Consensus 221 ~~g~~~~A~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 286 (647)
-..+.+.+.++|-.-......+.+ ..+-.|......+-+..+++.+....-.++..-.+.++..|+
T Consensus 571 l~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 571 LNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred hccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 123445555555441110011111 123345666677777778877776654555555566655553
No 472
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=26.13 E-value=3.1e+02 Score=21.16 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=11.1
Q ss_pred HHhcCCcHHHHHHHHHHHHH
Q 006388 385 ACSRAGLVEKGRHYFEIMVK 404 (647)
Q Consensus 385 a~~~~g~~~~a~~~~~~~~~ 404 (647)
.....|..++|...+++.++
T Consensus 50 ~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHhCCHHHHHHHHHHHHH
Confidence 34455666666666655543
No 473
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=25.88 E-value=6e+02 Score=27.17 Aligned_cols=56 Identities=16% Similarity=0.258 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCC--hh---HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006388 213 SALVDMYCKCKSIKYAESVFRTMAWKN--VV---SWTAMLVGYGQNGCSEEAVKIFCNMQR 268 (647)
Q Consensus 213 ~~li~~y~~~g~~~~A~~~~~~~~~~~--~~---~~~~li~~~~~~g~~~~A~~~~~~m~~ 268 (647)
..|+.-|.+.+++++|..++..|.... .. +.+.+.+.+.+..-..+....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 457889999999999999999998642 22 334444455555444444445554443
No 474
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=25.73 E-value=3.1e+02 Score=21.02 Aligned_cols=41 Identities=7% Similarity=0.055 Sum_probs=25.8
Q ss_pred HHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 006388 296 QFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEM 336 (647)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 336 (647)
++|+.....|+..|+.+|..+++...-+=..+...++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 56666666777777777777766665555555555555554
No 475
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=25.72 E-value=1.7e+02 Score=28.03 Aligned_cols=59 Identities=24% Similarity=0.197 Sum_probs=47.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhC
Q 006388 449 TLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 449 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 507 (647)
.+=+++.+.++++.|....++.+.++|.++.-...-+-+|.+.|...-|.+-+....+.
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 34455677788888999999999999988888888888888888888888888776553
No 476
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=25.56 E-value=6.1e+02 Score=24.42 Aligned_cols=49 Identities=14% Similarity=0.012 Sum_probs=23.6
Q ss_pred HHHHHHHHhcCCCC-ChhHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCC
Q 006388 225 IKYAESVFRTMAWK-NVVSWTAMLVGYGQ----NGCSEEAVKIFCNMQRNGIEP 273 (647)
Q Consensus 225 ~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p 273 (647)
...|.+.|...-+. +......|...|.. ..+..+|..+|.+.-+.|..+
T Consensus 93 ~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~ 146 (292)
T COG0790 93 KTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVE 146 (292)
T ss_pred HHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChh
Confidence 44455555543333 22233333333333 225666667776666666443
No 477
>PRK12357 glutaminase; Reviewed
Probab=25.08 E-value=6.8e+02 Score=24.80 Aligned_cols=61 Identities=18% Similarity=0.118 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCc-------ChHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 006388 378 TLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRP-------IHDHYTCMIDILSRAGRLEEAKSFINKMP 439 (647)
Q Consensus 378 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-------~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 439 (647)
+.....+.|+-....++.-.+.-.+.. .|+.| +..+-..+......+|.++.+-++.-+.+
T Consensus 196 ~Ld~Yf~qCsi~vt~~dLA~~ga~LAn-~Gv~P~tg~~vls~~~~r~v~a~M~tcGmYd~SG~fa~~VG 263 (326)
T PRK12357 196 TLEVYLKQCSIEVTTEDIALIGLILAH-DGYHPIRKEQVIPKEVARLTKALMLTCGMYNASGKFAAFVG 263 (326)
T ss_pred HHHHHHHHhccceeHHHHHHHHHHHhC-CCcCCCCCCEecCHHHHHHHHHHHHhcCCccchhhHHHHhC
Confidence 444444555554444443333333322 35555 24455556666677888888887777664
No 478
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=25.02 E-value=5.1e+02 Score=23.28 Aligned_cols=28 Identities=18% Similarity=0.353 Sum_probs=20.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 006388 450 LLSSCRIHGNVEIGKWAAESLLELDPYNP 478 (647)
Q Consensus 450 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 478 (647)
.+..|.+.|.+++|.+++++..+ +|++.
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~ 144 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQ 144 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCch
Confidence 34457888888888888888877 66543
No 479
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=24.92 E-value=3.6e+02 Score=21.52 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=9.9
Q ss_pred HHHHHHhcCChhHHHHHHHHH
Q 006388 246 MLVGYGQNGCSEEAVKIFCNM 266 (647)
Q Consensus 246 li~~~~~~g~~~~A~~~~~~m 266 (647)
++.-|...++.++|..-+.++
T Consensus 8 ~l~ey~~~~D~~ea~~~l~~L 28 (113)
T smart00544 8 IIEEYLSSGDTDEAVHCLLEL 28 (113)
T ss_pred HHHHHHHcCCHHHHHHHHHHh
Confidence 344444445555555444444
No 480
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=24.81 E-value=8e+02 Score=25.49 Aligned_cols=55 Identities=9% Similarity=0.161 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhcCCC--cChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006388 380 IGVLSACSRAGLVEKGRHYFEIMVKEYGIR--PIHDHYTCMIDILSRAGRLEEAKSFINKM 438 (647)
Q Consensus 380 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 438 (647)
..|+.-|...|++.+|.+..+++ |++ ....++.+++.+..+.|+-..-+.+++..
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeL----gmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~c 569 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKEL----GMPFFHHEVVKKALVMVMEKKGDSTMILDLLKEC 569 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHh----CCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 44666677777777777666554 332 23345666666666666655555555444
No 481
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=24.63 E-value=1.6e+02 Score=23.78 Aligned_cols=46 Identities=13% Similarity=0.140 Sum_probs=31.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCC
Q 006388 144 TMITGLMQNGLEREAIDLFREMRLEGLAMDQFTFGSVLTACGGLLA 189 (647)
Q Consensus 144 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~ 189 (647)
.++..+...+..-.|.++++.+.+.+..++..|....|+.+...|-
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 4556666666677788888888887777777776666666655554
No 482
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=24.53 E-value=74 Score=32.71 Aligned_cols=83 Identities=28% Similarity=0.311 Sum_probs=44.2
Q ss_pred HHHHHHhhHhcCcccCCcccccccchhhhhhhcccccHHHHHHHhhc----cCCCCCcEEEE-eccccCCCccchhhhhh
Q 006388 544 LEKLNRKMIKEGYVPDMSSVLHDVELSEKIKMLNHHSEKLAIAFGLL----FIPPGLPIRVV-KNLRVCSDCHNATKYIS 618 (647)
Q Consensus 544 l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~e~la~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~s 618 (647)
.++....+.+.|+.|-...+......+.....+..+-.+ ..+||.. ...+..|+.++ |-..+.+ +.++| ||
T Consensus 278 ~~kvr~~ld~~G~~~~~Ii~Sdg~lde~~i~~l~~~g~~-~d~FGvGT~L~~~~~~~~~~~v~Klvev~g--~p~~K-is 353 (405)
T COG1488 278 SEKVRAHLDKLGYDPVKIIVSDGLLDEKIIALLRAFGAR-NDAFGVGTNLTTAKPRPPLDIVYKLVEVNG--KPVAK-IS 353 (405)
T ss_pred HHHHHHHHHHcCCCceEEEEeCCcchHHHHHHHHHhCCC-ccEeccchhhccCCCCCcceeEEEEEEECC--cccee-ec
Confidence 344555666677777333333122222222233222222 4555544 33344556544 7777666 66666 78
Q ss_pred hhccceEEEecC
Q 006388 619 KITQREILVRDA 630 (647)
Q Consensus 619 ~~~~~~~~~~~~ 630 (647)
+-|++..+.|..
T Consensus 354 ~~Pgkk~~~r~~ 365 (405)
T COG1488 354 KNPGKKQVYRSA 365 (405)
T ss_pred CCCccceeecch
Confidence 889998887765
No 483
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=24.49 E-value=4.1e+02 Score=24.20 Aligned_cols=107 Identities=11% Similarity=0.019 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHH-HhhhhCCChhHHHHHHHHHHhCCCccCCCcceEeEcC
Q 006388 444 AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLS-SIYASKGKWDHVSQLRRTMREKGVRKDPGCSWIKYKS 522 (647)
Q Consensus 444 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~-~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~ 522 (647)
......++..|...||++.|-+++--++...+-|....-.++ .++.+.+.-....+.++.|...-..............
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~~~~~~~~~ 120 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAFNQYYNRRI 120 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccchhhhhc
Q ss_pred eEEEEEecCCCCcchHHHHHHHHHHHHh
Q 006388 523 RVHIFSADDWSSPYSDQIYAELEKLNRK 550 (647)
Q Consensus 523 ~~~~f~~~~~~~~~~~~~~~~l~~l~~~ 550 (647)
..+.|-.|...|.-.-.+...+..+.+.
T Consensus 121 ~~pvfrsGs~t~tp~y~~~~LW~~l~~~ 148 (199)
T PF04090_consen 121 IAPVFRSGSRTHTPLYAITWLWILLIQE 148 (199)
T ss_pred ccccccCCCcccchHHHHHHHHHHHHhh
No 484
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=24.17 E-value=6.9e+02 Score=24.50 Aligned_cols=30 Identities=13% Similarity=0.076 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 006388 375 DEVTLIGVLSACSRAGLVEKGRHYFEIMVK 404 (647)
Q Consensus 375 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 404 (647)
+...-..++.+.+...+.+...++++....
T Consensus 200 ~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 200 SPEEKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp THHHHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred CHHHHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 444445555555555555555555555554
No 485
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=23.85 E-value=2.5e+02 Score=26.61 Aligned_cols=23 Identities=9% Similarity=0.056 Sum_probs=18.5
Q ss_pred HHHHHHcCCChhHHHHHHHHHHH
Q 006388 12 LISGHASHGSVNDAVKVYNLMLK 34 (647)
Q Consensus 12 li~~~~~~g~~~~A~~~~~~m~~ 34 (647)
++..|...|++.+|++-|+.=..
T Consensus 16 i~rl~l~~~~~~~Av~q~~~H~~ 38 (247)
T PF11817_consen 16 ICRLYLWLNQPTEAVRQFRAHID 38 (247)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHH
Confidence 56888899999999988876543
No 486
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=23.78 E-value=29 Score=23.81 Aligned_cols=12 Identities=25% Similarity=0.891 Sum_probs=9.0
Q ss_pred cccCCCccchhh
Q 006388 604 LRVCSDCHNATK 615 (647)
Q Consensus 604 ~~~~~~~~~~~~ 615 (647)
.-+|||||.--.
T Consensus 20 iYiCgdC~~en~ 31 (62)
T KOG3507|consen 20 IYICGDCGQENT 31 (62)
T ss_pred EEEecccccccc
Confidence 468999997543
No 487
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=23.60 E-value=1.7e+02 Score=23.43 Aligned_cols=21 Identities=10% Similarity=0.192 Sum_probs=9.2
Q ss_pred HHHHHhcCCHHHHHHHHhcCC
Q 006388 216 VDMYCKCKSIKYAESVFRTMA 236 (647)
Q Consensus 216 i~~y~~~g~~~~A~~~~~~~~ 236 (647)
+.-|...|+.++|...+.++.
T Consensus 9 l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHhcCCCHHHHHHHHHHhC
Confidence 334444445555544444443
No 488
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=23.48 E-value=6.2e+02 Score=23.71 Aligned_cols=24 Identities=33% Similarity=0.618 Sum_probs=18.9
Q ss_pred HHcCChHHHHHHHHHHHHCCC-CCC
Q 006388 352 AKFGKANETIDLFEKMLSHGL-KPD 375 (647)
Q Consensus 352 ~~~g~~~~A~~~~~~m~~~g~-~p~ 375 (647)
...|+++.|+++.+-.++.|. .|+
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd 118 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPD 118 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCc
Confidence 467899999999999988874 354
No 489
>PHA03100 ankyrin repeat protein; Provisional
Probab=23.42 E-value=8.8e+02 Score=25.47 Aligned_cols=52 Identities=15% Similarity=0.075 Sum_probs=23.8
Q ss_pred HHHHhCCCChHHHHHHHHHHHHhCCCCchhh--HHHHHHH-----HHhcCChHHHHHHhccCC
Q 006388 49 LIMSSSRRCVDLGRQIHGHILKFGFGSYVFV--GSPLVDM-----YAKLGLIYDAKRGFDELP 104 (647)
Q Consensus 49 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~-----~~~~g~~~~A~~~~~~~~ 104 (647)
+......|+.+ +.+.+++.|..++... ....+.. .+..|..+-+.-+++.-.
T Consensus 39 L~~A~~~~~~~----ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga 97 (480)
T PHA03100 39 LYLAKEARNID----VVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGA 97 (480)
T ss_pred hhhhhccCCHH----HHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCC
Confidence 33344455543 3344445565444321 1223344 455566665555555433
No 490
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=23.27 E-value=6.6e+02 Score=24.00 Aligned_cols=96 Identities=15% Similarity=0.049 Sum_probs=44.7
Q ss_pred HHHhCCChhHHHHHHHHH----HHCCCCCChhhHHHHHHHHhcCCChH-HHHHHHHHHH---HcC--CCCchhHHHHHHH
Q 006388 148 GLMQNGLEREAIDLFREM----RLEGLAMDQFTFGSVLTACGGLLALE-EGKQIHAFII---RND--HKDNVFVGSALVD 217 (647)
Q Consensus 148 ~~~~~g~~~~A~~~~~~m----~~~g~~pd~~t~~~ll~~~~~~~~~~-~a~~~~~~~~---~~g--~~~~~~~~~~li~ 217 (647)
.+.+.|+...|-++-.-| .+.++++|......++..+...+.-+ .-.++...++ +.| ...++.....+..
T Consensus 19 ~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~ 98 (260)
T PF04190_consen 19 ILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAE 98 (260)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHH
T ss_pred HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHH
Confidence 345555555444443333 33455556555455554444332211 1222223332 222 2345677778888
Q ss_pred HHHhcCCHHHHHHHHhcCCCCChhHH
Q 006388 218 MYCKCKSIKYAESVFRTMAWKNVVSW 243 (647)
Q Consensus 218 ~y~~~g~~~~A~~~~~~~~~~~~~~~ 243 (647)
.|.+.|++.+|+..|-.-..++...+
T Consensus 99 ~~~~e~~~~~A~~Hfl~~~~~~~~~~ 124 (260)
T PF04190_consen 99 KLWKEGNYYEAERHFLLGTDPSAFAY 124 (260)
T ss_dssp HHHHTT-HHHHHHHHHTS-HHHHHHH
T ss_pred HHHhhccHHHHHHHHHhcCChhHHHH
Confidence 88888888888887755544433333
No 491
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=23.07 E-value=30 Score=18.02 Aligned_cols=11 Identities=27% Similarity=0.422 Sum_probs=7.1
Q ss_pred Cccchhhhhhh
Q 006388 609 DCHNATKYISK 619 (647)
Q Consensus 609 ~~~~~~~~~s~ 619 (647)
..|+++|+||.
T Consensus 11 glhe~ikli~n 21 (23)
T PF08225_consen 11 GLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHhc
Confidence 45777777763
No 492
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=22.70 E-value=2.2e+02 Score=20.94 Aligned_cols=45 Identities=18% Similarity=0.196 Sum_probs=26.9
Q ss_pred HHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 006388 326 IEDSHRLFNEMN---VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIG 381 (647)
Q Consensus 326 ~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 381 (647)
.+.|..++..+. ++.+..||++..-+.+++- .-+.+.||..+...
T Consensus 13 tEmA~~mL~DLr~dekRsPQLYnAI~k~L~RHkF-----------~iskl~pd~~~LG~ 60 (82)
T PF11123_consen 13 TEMAQQMLADLRDDEKRSPQLYNAIGKLLDRHKF-----------QISKLQPDENILGE 60 (82)
T ss_pred HHHHHHHHHHhcchhhcChHHHHHHHHHHHHccc-----------hhhhcCccHHHHHH
Confidence 455666666665 4467788887776666542 12236777665533
No 493
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=22.67 E-value=4.5e+02 Score=27.07 Aligned_cols=55 Identities=11% Similarity=0.216 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCC-----------CChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 006388 314 NALVTFYGKCGNIEDSHRLFNEMNV-----------RDEVSWTALVSGYAKFGKANETIDLFEKML 368 (647)
Q Consensus 314 ~~li~~~~~~g~~~~A~~~~~~~~~-----------~d~~~~~~li~~~~~~g~~~~A~~~~~~m~ 368 (647)
..|++..+-.|++..|+++++.+.- -.+.++--+.-+|...+++.+|.+.|....
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777888888888888877651 145567777788888899999998887754
No 494
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=22.39 E-value=2e+02 Score=23.12 Aligned_cols=43 Identities=14% Similarity=0.160 Sum_probs=22.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC
Q 006388 348 VSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAG 390 (647)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 390 (647)
+..+...+..-.|.++++++.+.+..++..|.-..|..+...|
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 3334444444556666666665555555555544444444444
No 495
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=22.32 E-value=7.1e+02 Score=23.98 Aligned_cols=49 Identities=12% Similarity=0.016 Sum_probs=29.7
Q ss_pred CChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCC---------------ChhHHHHHHHHHHhCCC
Q 006388 458 GNVEIGKWAAESLLELDPYNPASYVLLSSIYASKG---------------KWDHVSQLRRTMREKGV 509 (647)
Q Consensus 458 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~a~~~~~~m~~~g~ 509 (647)
.|.++|...++++-+.+. ......+. .+...| +...|...+......|.
T Consensus 205 ~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred cCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 366777777777777665 44444455 444444 66666666666665554
No 496
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=22.23 E-value=7.6e+02 Score=24.28 Aligned_cols=45 Identities=9% Similarity=0.158 Sum_probs=30.2
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 006388 260 VKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVT 304 (647)
Q Consensus 260 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 304 (647)
.++++.|...++.|.-..|..+.-.+.+.=.+.....+++.+...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD 307 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD 307 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC
Confidence 456666677777777777766666666666667777777666543
No 497
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=22.16 E-value=3.5e+02 Score=28.53 Aligned_cols=89 Identities=13% Similarity=0.146 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCC--------CchhHHH
Q 006388 412 HDHYTCMIDILSRAGRLEEAKSFINKMPFPPDAIGWATLLSSCRIHGNVEIGKWAAESLLELDPY--------NPASYVL 483 (647)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--------~~~~~~~ 483 (647)
+..|-..+.-|...+++++|.++..-.+ +...|.+|...-..+.++..++.+|..+.+.+.- -+..-..
T Consensus 573 V~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~~ 649 (737)
T KOG1524|consen 573 VNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEEQ 649 (737)
T ss_pred ccccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHHH
Confidence 3446666677788889999988877664 5667888888888888887777777666654320 1111223
Q ss_pred HHHhhhhCCChhHHHHHHHH
Q 006388 484 LSSIYASKGKWDHVSQLRRT 503 (647)
Q Consensus 484 l~~~~~~~g~~~~a~~~~~~ 503 (647)
++....-.|+..+|.-++.+
T Consensus 650 mA~~~l~~G~~~eAe~iLl~ 669 (737)
T KOG1524|consen 650 MAENSLMLGRMLEAETILLH 669 (737)
T ss_pred HHHHHHHhccchhhhHHHHh
Confidence 34444456676666666543
No 498
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=22.01 E-value=1e+02 Score=31.82 Aligned_cols=104 Identities=14% Similarity=0.139 Sum_probs=68.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcCh-HHHHHHHHHHHHc
Q 006388 348 VSGYAKFGKANETIDLFEKMLSHGLKPDEVTL-IGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIH-DHYTCMIDILSRA 425 (647)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~ 425 (647)
...+...+.++.|..++.+.++ +.||...| ..-..++.+.+++..|+.=+..+++. .|+. ..|--=..++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHhH
Confidence 3455667889999999999998 47876644 44447888889998888776666542 3431 2222222334445
Q ss_pred CCHHHHHHHHHhC-CCCCChhhHHHHHHHHHh
Q 006388 426 GRLEEAKSFINKM-PFPPDAIGWATLLSSCRI 456 (647)
Q Consensus 426 g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~ 456 (647)
+.+.+|...|+.. .+.|+..-....+.-|-.
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 6677777777776 567877766666666643
No 499
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=21.98 E-value=1.7e+02 Score=17.55 Aligned_cols=23 Identities=9% Similarity=0.280 Sum_probs=13.2
Q ss_pred ChhHHHHHHHHHhccCCCCchhHH
Q 006388 459 NVEIGKWAAESLLELDPYNPASYV 482 (647)
Q Consensus 459 ~~~~a~~~~~~~~~~~p~~~~~~~ 482 (647)
.++.|..+|++.+...| ++.++.
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~Wi 24 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWI 24 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHH
Confidence 35666666666666665 344443
No 500
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=21.21 E-value=6.5e+02 Score=24.84 Aligned_cols=57 Identities=9% Similarity=0.179 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-hh----hHHHHHHHHHHcCChHHHHHHHHH
Q 006388 310 ITVSNALVTFYGKCGNIEDSHRLFNEMNVRD-EV----SWTALVSGYAKFGKANETIDLFEK 366 (647)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d-~~----~~~~li~~~~~~g~~~~A~~~~~~ 366 (647)
+.+-..|.-+--|.|++.+|.+.|+.+.+.- .. .-..+|.++....-+.+...++-+
T Consensus 275 ~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 275 VYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333456666667899999999998876331 11 123355555554444444444433
Done!