Query 006388
Match_columns 647
No_of_seqs 766 out of 4376
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 23:43:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006388.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006388hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.1E-41 7.4E-46 370.1 41.0 476 18-507 65-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.8E-41 6.3E-46 370.6 35.4 480 1-490 79-596 (597)
3 4g26_A Pentatricopeptide repea 100.0 6E-28 2.1E-32 253.1 23.1 183 241-424 27-222 (501)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.4E-25 4.9E-30 230.7 39.3 343 142-492 36-387 (388)
5 1w3b_A UDP-N-acetylglucosamine 100.0 9E-25 3.1E-29 224.8 43.1 352 145-506 5-367 (388)
6 4g26_A Pentatricopeptide repea 100.0 3.6E-27 1.2E-31 247.2 21.5 184 140-323 27-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 6.2E-23 2.1E-27 219.2 31.3 95 6-104 6-100 (514)
8 2gw1_A Mitochondrial precursor 99.9 4E-22 1.4E-26 212.9 33.4 392 109-507 7-478 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 1.4E-21 4.9E-26 205.0 35.5 338 138-503 25-405 (450)
10 3fp2_A TPR repeat-containing p 99.9 1.4E-21 4.9E-26 210.0 32.6 420 8-507 27-491 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 1.2E-20 4.2E-25 197.8 33.2 372 75-496 24-443 (450)
12 3ieg_A DNAJ homolog subfamily 99.8 9.9E-18 3.4E-22 169.6 34.7 305 174-507 3-335 (359)
13 3ieg_A DNAJ homolog subfamily 99.8 1.2E-17 4.2E-22 168.8 33.8 325 138-490 2-352 (359)
14 3fp2_A TPR repeat-containing p 99.8 1.5E-17 5.2E-22 178.5 33.6 389 4-438 57-488 (537)
15 1b89_A Protein (clathrin heavy 99.8 1.2E-18 4.3E-23 173.9 22.7 327 141-503 34-368 (449)
16 3hym_B Cell division cycle pro 99.8 2.1E-17 7.3E-22 165.1 30.4 287 206-495 19-322 (330)
17 1xi4_A Clathrin heavy chain; a 99.8 5.2E-15 1.8E-19 164.2 47.2 379 76-500 984-1377(1630)
18 1xi4_A Clathrin heavy chain; a 99.8 4.5E-15 1.6E-19 164.6 46.8 381 10-436 989-1379(1630)
19 2xm6_A Protein corresponding t 99.8 1.4E-15 4.9E-20 161.0 39.6 350 122-490 57-452 (490)
20 3hym_B Cell division cycle pro 99.8 1E-16 3.5E-21 160.1 27.4 264 238-506 20-298 (330)
21 2ooe_A Cleavage stimulation fa 99.8 9.4E-16 3.2E-20 164.1 36.0 208 293-506 256-491 (530)
22 1fch_A Peroxisomal targeting s 99.8 6.4E-17 2.2E-21 164.5 24.6 279 221-503 37-355 (368)
23 2ooe_A Cleavage stimulation fa 99.8 2.3E-15 7.7E-20 161.2 37.7 406 65-476 2-495 (530)
24 2xm6_A Protein corresponding t 99.8 1.2E-14 4.2E-19 153.8 40.7 352 137-509 37-434 (490)
25 4eqf_A PEX5-related protein; a 99.7 5.9E-17 2E-21 164.7 19.2 261 239-503 64-352 (365)
26 1b89_A Protein (clathrin heavy 99.7 2.6E-16 9E-21 157.2 22.9 281 18-333 15-305 (449)
27 1fch_A Peroxisomal targeting s 99.7 4.4E-16 1.5E-20 158.3 24.2 270 177-471 67-357 (368)
28 3mkr_A Coatomer subunit epsilo 99.7 2.8E-15 9.5E-20 146.5 28.1 268 218-499 8-286 (291)
29 4g1t_A Interferon-induced prot 99.7 4.3E-15 1.5E-19 156.6 31.1 327 176-517 96-469 (472)
30 3cv0_A Peroxisome targeting si 99.7 9.8E-16 3.3E-20 152.7 22.1 255 245-504 26-312 (327)
31 4eqf_A PEX5-related protein; a 99.7 1.6E-15 5.4E-20 154.1 22.5 231 274-507 64-310 (365)
32 3mkr_A Coatomer subunit epsilo 99.7 3.1E-15 1E-19 146.3 23.6 246 247-507 6-264 (291)
33 4g1t_A Interferon-induced prot 99.7 2.6E-14 8.9E-19 150.6 28.4 378 75-485 49-471 (472)
34 3spa_A Mtrpol, DNA-directed RN 99.7 1.6E-16 5.3E-21 171.0 9.8 133 305-438 122-262 (1134)
35 3cv0_A Peroxisome targeting si 99.7 4.8E-14 1.6E-18 140.4 27.2 263 138-437 20-311 (327)
36 3spa_A Mtrpol, DNA-directed RN 99.6 1.9E-16 6.5E-21 170.4 9.0 150 206-355 124-286 (1134)
37 3uq3_A Heat shock protein STI1 99.6 9.8E-14 3.4E-18 132.9 22.2 225 241-507 6-236 (258)
38 2pl2_A Hypothetical conserved 99.6 3.9E-14 1.3E-18 132.1 18.4 194 307-504 2-211 (217)
39 3uq3_A Heat shock protein STI1 99.6 1.1E-13 3.7E-18 132.6 20.7 235 209-487 5-256 (258)
40 3e4b_A ALGK; tetratricopeptide 99.6 3.1E-13 1.1E-17 140.9 23.7 378 48-506 9-420 (452)
41 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.8E-13 6.2E-18 132.5 19.1 240 253-501 18-269 (275)
42 3u4t_A TPR repeat-containing p 99.5 3.8E-13 1.3E-17 130.1 20.1 245 212-492 6-269 (272)
43 2pl2_A Hypothetical conserved 99.5 2.9E-13 1E-17 126.1 15.5 200 1-235 1-211 (217)
44 2ho1_A Type 4 fimbrial biogene 99.5 6.8E-12 2.3E-16 119.7 24.9 163 316-480 77-245 (252)
45 2vq2_A PILW, putative fimbrial 99.5 3.5E-12 1.2E-16 119.1 22.1 198 308-507 6-211 (225)
46 3e4b_A ALGK; tetratricopeptide 99.5 2.3E-12 7.9E-17 134.3 22.3 345 144-510 8-390 (452)
47 2q7f_A YRRB protein; TPR, prot 99.5 1E-12 3.5E-17 124.5 18.1 170 316-488 63-237 (243)
48 2ho1_A Type 4 fimbrial biogene 99.5 2.6E-12 9E-17 122.6 20.9 197 310-508 37-239 (252)
49 1ouv_A Conserved hypothetical 99.5 1.8E-11 6.1E-16 118.5 26.6 224 239-508 5-252 (273)
50 2h6f_A Protein farnesyltransfe 99.5 2.5E-12 8.7E-17 129.9 21.1 243 240-489 97-364 (382)
51 1ouv_A Conserved hypothetical 99.5 2E-11 6.8E-16 118.1 26.7 227 207-477 4-255 (273)
52 2q7f_A YRRB protein; TPR, prot 99.5 1.1E-12 3.9E-17 124.3 16.9 196 309-507 22-222 (243)
53 2vq2_A PILW, putative fimbrial 99.5 9.4E-12 3.2E-16 116.2 23.0 208 239-484 7-222 (225)
54 4e6h_A MRNA 3'-END-processing 99.5 5.5E-10 1.9E-14 120.4 39.3 438 21-489 47-585 (679)
55 3u4t_A TPR repeat-containing p 99.4 1E-11 3.4E-16 120.0 22.3 238 174-451 3-262 (272)
56 2h6f_A Protein farnesyltransfe 99.4 2.9E-12 9.8E-17 129.5 18.3 225 276-506 98-347 (382)
57 4a1s_A PINS, partner of inscut 99.4 1.3E-12 4.5E-17 134.8 16.0 196 311-506 127-371 (411)
58 3sf4_A G-protein-signaling mod 99.4 3E-12 1E-16 131.6 18.5 196 311-506 88-335 (406)
59 3ro2_A PINS homolog, G-protein 99.4 5.6E-12 1.9E-16 125.5 19.7 260 246-507 11-332 (338)
60 1xnf_A Lipoprotein NLPI; TPR, 99.4 1E-11 3.5E-16 120.0 21.0 215 151-370 17-244 (275)
61 3vtx_A MAMA; tetratricopeptide 99.4 9.6E-12 3.3E-16 112.4 19.1 164 340-507 4-170 (184)
62 4abn_A Tetratricopeptide repea 99.4 2.3E-12 7.8E-17 135.3 15.2 192 308-503 100-317 (474)
63 3sf4_A G-protein-signaling mod 99.4 5.3E-12 1.8E-16 129.7 16.2 292 173-495 8-364 (406)
64 3vtx_A MAMA; tetratricopeptide 99.3 3.1E-11 1.1E-15 109.0 16.6 167 309-478 4-175 (184)
65 2ond_A Cleavage stimulation fa 99.3 4.4E-10 1.5E-14 110.7 26.0 218 257-478 33-275 (308)
66 4a1s_A PINS, partner of inscut 99.3 1.1E-11 3.8E-16 127.7 14.9 267 177-475 51-374 (411)
67 3nf1_A KLC 1, kinesin light ch 99.3 4.8E-12 1.6E-16 124.8 10.7 236 240-506 27-306 (311)
68 4gyw_A UDP-N-acetylglucosamine 99.3 2.3E-11 8E-16 132.7 17.0 162 340-506 8-173 (723)
69 3ro2_A PINS homolog, G-protein 99.3 4.1E-11 1.4E-15 119.2 17.1 133 343-475 185-334 (338)
70 3ulq_A Response regulator aspa 99.3 6.5E-11 2.2E-15 120.8 18.3 195 311-506 144-367 (383)
71 4e6h_A MRNA 3'-END-processing 99.3 9.4E-09 3.2E-13 110.9 35.0 430 4-456 64-586 (679)
72 2ond_A Cleavage stimulation fa 99.3 7.3E-10 2.5E-14 109.1 24.2 245 226-485 33-304 (308)
73 3nf1_A KLC 1, kinesin light ch 99.3 1.3E-11 4.5E-16 121.6 11.3 239 207-476 25-310 (311)
74 3ulq_A Response regulator aspa 99.3 1.4E-10 4.8E-15 118.3 19.1 229 246-474 109-369 (383)
75 3as5_A MAMA; tetratricopeptide 99.3 1.8E-10 6.3E-15 103.5 16.9 160 345-507 12-173 (186)
76 4i17_A Hypothetical protein; T 99.2 7.4E-10 2.5E-14 103.7 20.1 204 273-488 5-224 (228)
77 1hz4_A MALT regulatory protein 99.2 5.2E-09 1.8E-13 106.1 27.5 258 249-506 23-321 (373)
78 4i17_A Hypothetical protein; T 99.2 5.5E-10 1.9E-14 104.6 18.3 188 310-506 7-208 (228)
79 3as5_A MAMA; tetratricopeptide 99.2 8.1E-10 2.8E-14 99.2 18.0 169 310-481 8-181 (186)
80 3q15_A PSP28, response regulat 99.2 7.1E-10 2.4E-14 112.8 19.7 221 285-506 111-364 (378)
81 4abn_A Tetratricopeptide repea 99.2 3.5E-10 1.2E-14 118.6 15.5 211 23-266 85-318 (474)
82 3q15_A PSP28, response regulat 99.1 1.4E-08 4.8E-13 103.1 24.6 227 246-473 107-365 (378)
83 3edt_B KLC 2, kinesin light ch 99.1 8.6E-10 2.9E-14 106.7 14.7 197 310-506 43-280 (283)
84 1hz4_A MALT regulatory protein 99.1 5E-08 1.7E-12 98.8 27.3 158 145-302 20-201 (373)
85 4gyw_A UDP-N-acetylglucosamine 99.1 1.4E-09 4.7E-14 118.8 15.3 165 307-475 6-176 (723)
86 3qky_A Outer membrane assembly 99.0 1.9E-08 6.6E-13 96.2 19.2 204 310-553 15-247 (261)
87 1qqe_A Vesicular transport pro 99.0 7.6E-09 2.6E-13 100.9 16.2 217 224-477 32-273 (292)
88 3mv2_B Coatomer subunit epsilo 99.0 7.7E-08 2.6E-12 92.1 21.9 163 340-507 99-282 (310)
89 1qqe_A Vesicular transport pro 99.0 8.6E-09 2.9E-13 100.5 15.3 200 290-504 32-266 (292)
90 2yhc_A BAMD, UPF0169 lipoprote 99.0 5.2E-08 1.8E-12 90.8 19.7 180 312-510 6-216 (225)
91 3edt_B KLC 2, kinesin light ch 98.9 1.7E-08 5.7E-13 97.4 16.3 162 312-473 87-281 (283)
92 3qky_A Outer membrane assembly 98.9 3.9E-08 1.3E-12 94.1 18.5 202 273-495 13-249 (261)
93 2fo7_A Synthetic consensus TPR 98.9 1.8E-08 6E-13 84.8 14.2 122 383-506 8-131 (136)
94 4ga2_A E3 SUMO-protein ligase 98.9 1.3E-09 4.4E-14 94.5 7.0 139 351-493 7-149 (150)
95 2pzi_A Probable serine/threoni 98.9 6E-09 2E-13 114.3 12.5 168 321-493 402-583 (681)
96 3mv2_B Coatomer subunit epsilo 98.9 3E-07 1E-11 88.0 22.3 242 219-482 23-291 (310)
97 2fo7_A Synthetic consensus TPR 98.9 4.9E-08 1.7E-12 82.0 15.0 131 343-476 3-135 (136)
98 3qou_A Protein YBBN; thioredox 98.8 2.7E-08 9.2E-13 96.7 14.0 172 329-505 105-282 (287)
99 2vsy_A XCC0866; transferase, g 98.8 2.5E-07 8.7E-12 99.4 21.2 159 323-485 2-169 (568)
100 3rjv_A Putative SEL1 repeat pr 98.8 2.8E-07 9.6E-12 84.9 18.6 162 339-509 16-199 (212)
101 4ga2_A E3 SUMO-protein ligase 98.8 7.7E-09 2.6E-13 89.6 7.2 121 383-506 4-128 (150)
102 2ifu_A Gamma-SNAP; membrane fu 98.8 1E-07 3.4E-12 93.6 15.7 220 253-500 4-254 (307)
103 2uy1_A Cleavage stimulation fa 98.8 3.6E-06 1.2E-10 88.0 28.1 361 55-469 7-409 (493)
104 2pzi_A Probable serine/threoni 98.8 1.2E-07 4.1E-12 103.9 17.3 188 286-479 402-608 (681)
105 3gyz_A Chaperone protein IPGC; 98.8 3E-08 1E-12 85.5 9.6 102 407-508 30-134 (151)
106 2vsy_A XCC0866; transferase, g 98.7 6.5E-08 2.2E-12 104.1 14.3 151 354-508 2-158 (568)
107 3urz_A Uncharacterized protein 98.7 1.8E-07 6.2E-12 85.9 14.5 126 347-477 60-190 (208)
108 4gco_A Protein STI-1; structur 98.7 8.7E-08 3E-12 80.0 11.3 108 378-487 15-124 (126)
109 2vgx_A Chaperone SYCD; alterna 98.7 5.6E-08 1.9E-12 83.8 10.2 101 407-507 15-118 (148)
110 2r5s_A Uncharacterized protein 98.7 6.6E-08 2.3E-12 86.2 11.0 76 431-506 93-172 (176)
111 2uy1_A Cleavage stimulation fa 98.7 2.4E-05 8.4E-10 81.7 31.0 347 8-369 17-412 (493)
112 3dra_A Protein farnesyltransfe 98.7 4.2E-06 1.4E-10 80.9 22.9 149 355-506 124-286 (306)
113 4gco_A Protein STI-1; structur 98.7 9.8E-08 3.4E-12 79.6 10.0 100 408-507 8-110 (126)
114 3u3w_A Transcriptional activat 98.7 4.2E-06 1.4E-10 81.3 22.9 160 347-506 81-265 (293)
115 2ifu_A Gamma-SNAP; membrane fu 98.6 9.3E-08 3.2E-12 93.9 10.4 196 288-505 4-222 (307)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.6 6E-07 2.1E-11 82.5 15.2 123 381-508 11-151 (213)
117 2r5s_A Uncharacterized protein 98.6 4.1E-07 1.4E-11 81.0 13.1 155 313-471 9-171 (176)
118 2qfc_A PLCR protein; TPR, HTH, 98.6 7.2E-07 2.5E-11 86.8 15.9 164 343-506 77-265 (293)
119 2yhc_A BAMD, UPF0169 lipoprote 98.6 1.1E-06 3.9E-11 81.6 16.4 183 275-478 4-218 (225)
120 3qou_A Protein YBBN; thioredox 98.6 2E-06 6.8E-11 83.3 18.6 156 278-436 120-279 (287)
121 2xcb_A PCRH, regulatory protei 98.6 3.6E-07 1.2E-11 78.0 11.8 96 412-507 18-115 (142)
122 1hh8_A P67PHOX, NCF-2, neutrop 98.6 2.5E-06 8.5E-11 78.3 18.3 143 315-477 11-154 (213)
123 3urz_A Uncharacterized protein 98.6 1.1E-06 3.9E-11 80.5 15.8 185 243-452 7-198 (208)
124 3dra_A Protein farnesyltransfe 98.6 3.3E-05 1.1E-09 74.6 25.9 227 255-487 48-302 (306)
125 3rjv_A Putative SEL1 repeat pr 98.6 3.5E-06 1.2E-10 77.4 18.3 172 294-475 5-199 (212)
126 1a17_A Serine/threonine protei 98.6 9.2E-07 3.2E-11 77.4 13.5 127 378-506 15-145 (166)
127 1na0_A Designed protein CTPR3; 98.5 1.1E-06 3.6E-11 72.6 12.7 114 377-492 10-125 (125)
128 2c2l_A CHIP, carboxy terminus 98.5 2.6E-07 8.9E-12 89.3 9.6 190 310-507 4-199 (281)
129 2vyi_A SGTA protein; chaperone 98.5 1E-06 3.5E-11 73.3 11.9 115 378-494 14-130 (131)
130 1p5q_A FKBP52, FK506-binding p 98.5 6.4E-07 2.2E-11 89.0 12.2 144 340-505 146-292 (336)
131 3upv_A Heat shock protein STI1 98.5 1E-06 3.6E-11 73.2 10.6 96 412-507 4-101 (126)
132 2lni_A Stress-induced-phosphop 98.5 1.1E-06 3.8E-11 73.5 10.8 111 380-492 20-132 (133)
133 3u3w_A Transcriptional activat 98.4 2.3E-05 7.8E-10 76.1 21.6 159 315-473 80-266 (293)
134 2e2e_A Formate-dependent nitri 98.4 4.6E-07 1.6E-11 80.6 8.7 120 387-508 21-145 (177)
135 2qfc_A PLCR protein; TPR, HTH, 98.4 6.4E-06 2.2E-10 80.0 17.3 162 312-473 77-266 (293)
136 1hxi_A PEX5, peroxisome target 98.4 6.9E-07 2.4E-11 73.8 8.0 94 414-507 19-114 (121)
137 3gyz_A Chaperone protein IPGC; 98.4 1.1E-06 3.6E-11 75.7 9.2 98 378-477 38-137 (151)
138 2kck_A TPR repeat; tetratricop 98.4 1.5E-06 5.3E-11 70.0 9.6 98 412-509 6-108 (112)
139 2vgx_A Chaperone SYCD; alterna 98.4 6.2E-07 2.1E-11 77.1 7.5 107 373-481 17-126 (148)
140 3sz7_A HSC70 cochaperone (SGT) 98.4 1.4E-06 4.7E-11 76.5 9.8 96 411-506 10-107 (164)
141 3q49_B STIP1 homology and U bo 98.4 3E-06 1E-10 71.5 11.5 98 410-507 7-106 (137)
142 4f3v_A ESX-1 secretion system 98.4 5.9E-06 2E-10 78.0 14.4 181 322-507 18-237 (282)
143 4gcn_A Protein STI-1; structur 98.3 1.3E-06 4.4E-11 72.9 8.5 94 413-506 9-111 (127)
144 3gw4_A Uncharacterized protein 98.3 5.4E-06 1.8E-10 75.3 13.3 59 447-505 110-174 (203)
145 2fbn_A 70 kDa peptidylprolyl i 98.3 2.6E-06 8.9E-11 77.3 11.1 168 320-508 14-187 (198)
146 3q7a_A Farnesyltransferase alp 98.3 0.00025 8.4E-09 69.3 25.1 228 9-269 57-331 (349)
147 2lni_A Stress-induced-phosphop 98.3 3.8E-06 1.3E-10 70.1 10.9 99 409-507 13-113 (133)
148 1elw_A TPR1-domain of HOP; HOP 98.3 4.6E-06 1.6E-10 67.8 11.0 94 413-506 5-100 (118)
149 1na0_A Designed protein CTPR3; 98.3 4.2E-06 1.4E-10 68.8 10.8 96 412-507 9-106 (125)
150 1elw_A TPR1-domain of HOP; HOP 98.3 8.9E-06 3E-10 66.1 12.6 109 378-488 6-116 (118)
151 2xcb_A PCRH, regulatory protei 98.3 2.6E-06 8.9E-11 72.6 9.5 104 378-483 20-125 (142)
152 4f3v_A ESX-1 secretion system 98.3 1.5E-05 5E-10 75.3 15.2 182 18-203 18-237 (282)
153 2dba_A Smooth muscle cell asso 98.3 1.7E-05 5.8E-10 67.6 14.1 110 378-490 30-145 (148)
154 2e2e_A Formate-dependent nitri 98.3 6.1E-06 2.1E-10 73.2 11.4 127 352-481 21-152 (177)
155 2dba_A Smooth muscle cell asso 98.2 7.3E-06 2.5E-10 69.9 11.4 98 410-507 26-128 (148)
156 3upv_A Heat shock protein STI1 98.2 5.6E-06 1.9E-10 68.7 10.3 108 378-487 6-121 (126)
157 1a17_A Serine/threonine protei 98.2 2E-05 6.8E-10 68.7 14.2 127 343-472 15-145 (166)
158 3rkv_A Putative peptidylprolyl 98.2 7.8E-06 2.7E-10 71.4 11.2 64 444-507 63-126 (162)
159 3sz7_A HSC70 cochaperone (SGT) 98.2 6.6E-06 2.2E-10 72.0 10.7 107 377-485 12-120 (164)
160 3gw4_A Uncharacterized protein 98.2 2E-05 6.9E-10 71.4 14.3 47 222-268 5-54 (203)
161 2vyi_A SGTA protein; chaperone 98.2 6.7E-06 2.3E-10 68.2 10.1 97 411-507 11-109 (131)
162 2c2l_A CHIP, carboxy terminus 98.2 1.5E-05 5.1E-10 76.8 13.8 187 278-474 7-200 (281)
163 2hr2_A Hypothetical protein; a 98.2 5E-06 1.7E-10 70.8 8.7 92 415-506 14-130 (159)
164 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.1E-05 3.6E-10 83.9 12.7 145 341-507 268-415 (457)
165 3q7a_A Farnesyltransferase alp 98.2 0.0011 3.6E-08 64.8 25.6 174 248-427 62-257 (349)
166 2xev_A YBGF; tetratricopeptide 98.1 1.1E-05 3.6E-10 67.2 9.5 91 417-507 7-105 (129)
167 4b4t_Q 26S proteasome regulato 98.1 3.3E-05 1.1E-09 79.6 15.3 164 343-506 57-244 (434)
168 3q49_B STIP1 homology and U bo 98.1 1.2E-05 4E-10 67.7 9.8 100 375-476 8-109 (137)
169 1wao_1 Serine/threonine protei 98.1 5.1E-06 1.7E-10 86.7 8.9 114 387-502 17-134 (477)
170 1wao_1 Serine/threonine protei 98.1 1.7E-05 6E-10 82.6 12.9 112 353-468 18-134 (477)
171 3dss_A Geranylgeranyl transfer 98.1 0.00046 1.6E-08 67.0 21.9 78 292-370 91-174 (331)
172 3k9i_A BH0479 protein; putativ 98.1 2.3E-06 7.8E-11 70.1 4.2 82 425-506 3-89 (117)
173 1elr_A TPR2A-domain of HOP; HO 98.1 1.2E-05 4.2E-10 66.6 8.8 96 412-507 4-108 (131)
174 1p5q_A FKBP52, FK506-binding p 98.1 2.3E-05 8E-10 77.6 12.1 112 289-403 127-257 (336)
175 3dss_A Geranylgeranyl transfer 98.1 0.00076 2.6E-08 65.5 22.2 178 326-506 90-303 (331)
176 1hxi_A PEX5, peroxisome target 98.0 1.8E-05 6E-10 65.2 9.0 96 381-478 22-119 (121)
177 4gcn_A Protein STI-1; structur 98.0 2.5E-05 8.5E-10 64.9 9.6 100 343-475 10-114 (127)
178 3ro3_A PINS homolog, G-protein 98.0 3.1E-05 1.1E-09 66.8 10.7 93 414-506 51-157 (164)
179 1elr_A TPR2A-domain of HOP; HO 98.0 4.5E-05 1.5E-09 63.1 11.2 106 380-488 8-122 (131)
180 2kck_A TPR repeat; tetratricop 98.0 4.3E-05 1.5E-09 61.2 10.5 100 3-105 3-105 (112)
181 1ihg_A Cyclophilin 40; ppiase 98.0 3.9E-05 1.3E-09 77.0 12.3 137 342-500 224-363 (370)
182 2hr2_A Hypothetical protein; a 98.0 1.2E-05 3.9E-10 68.6 6.8 71 414-484 59-142 (159)
183 2xev_A YBGF; tetratricopeptide 98.0 6.9E-05 2.4E-09 62.1 11.6 102 383-484 9-116 (129)
184 2fbn_A 70 kDa peptidylprolyl i 98.0 9.3E-05 3.2E-09 66.9 13.2 96 412-507 38-151 (198)
185 2if4_A ATFKBP42; FKBP-like, al 98.0 1.2E-05 3.9E-10 79.9 7.5 147 341-507 179-328 (338)
186 3k9i_A BH0479 protein; putativ 97.9 1.1E-05 3.6E-10 66.1 5.7 93 389-481 3-98 (117)
187 3n71_A Histone lysine methyltr 97.9 5.8E-05 2E-09 78.2 12.4 124 385-508 318-465 (490)
188 3rkv_A Putative peptidylprolyl 97.9 2.4E-05 8.1E-10 68.2 7.9 74 412-485 63-139 (162)
189 3ro3_A PINS homolog, G-protein 97.9 5.4E-05 1.9E-09 65.3 10.2 131 344-474 12-159 (164)
190 1dce_A Protein (RAB geranylger 97.9 0.00048 1.6E-08 73.1 19.1 170 324-496 43-244 (567)
191 2if4_A ATFKBP42; FKBP-like, al 97.8 4.2E-05 1.4E-09 75.8 9.0 152 310-478 179-333 (338)
192 2l6j_A TPR repeat-containing p 97.8 3.4E-05 1.2E-09 61.9 6.6 92 411-502 3-102 (111)
193 4b4t_Q 26S proteasome regulato 97.8 0.00025 8.5E-09 72.9 14.6 158 349-506 12-203 (434)
194 3ma5_A Tetratricopeptide repea 97.8 8.1E-05 2.8E-09 58.6 8.2 65 443-507 6-70 (100)
195 1ihg_A Cyclophilin 40; ppiase 97.8 0.00012 4.2E-09 73.3 11.2 65 443-507 272-336 (370)
196 1na3_A Designed protein CTPR2; 97.8 9.1E-05 3.1E-09 56.8 8.1 81 412-492 9-91 (91)
197 2kat_A Uncharacterized protein 97.7 5.5E-05 1.9E-09 61.4 6.8 77 430-506 3-81 (115)
198 3lvg_A Clathrin heavy chain 1; 97.7 5.9E-06 2E-10 81.7 1.0 432 6-500 54-534 (624)
199 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00027 9.2E-09 73.2 13.5 95 413-507 269-380 (457)
200 1zu2_A Mitochondrial import re 97.7 1.9E-05 6.5E-10 67.1 3.7 84 424-507 14-120 (158)
201 2l6j_A TPR repeat-containing p 97.6 7.1E-05 2.4E-09 60.0 5.2 97 5-104 3-105 (111)
202 3bee_A Putative YFRE protein; 97.5 0.00045 1.5E-08 53.3 8.6 70 441-510 3-75 (93)
203 1zu2_A Mitochondrial import re 97.5 9.4E-05 3.2E-09 62.8 4.5 87 390-478 16-125 (158)
204 3qwp_A SET and MYND domain-con 97.4 0.00025 8.6E-09 72.3 7.5 116 419-552 294-427 (429)
205 3n71_A Histone lysine methyltr 97.3 0.0011 3.9E-08 68.5 11.9 122 351-472 319-463 (490)
206 1na3_A Designed protein CTPR2; 97.3 0.0009 3.1E-08 51.0 7.8 83 5-90 8-90 (91)
207 1klx_A Cysteine rich protein B 97.2 0.0023 7.8E-08 53.7 10.8 116 355-509 9-128 (138)
208 2kat_A Uncharacterized protein 97.2 0.0009 3.1E-08 54.0 7.6 80 395-476 4-85 (115)
209 1dce_A Protein (RAB geranylger 97.2 0.0041 1.4E-07 65.9 14.1 148 355-506 43-220 (567)
210 3ly7_A Transcriptional activat 97.1 0.0068 2.3E-07 59.1 14.1 137 338-476 191-342 (372)
211 3lvg_A Clathrin heavy chain 1; 97.1 5E-05 1.7E-09 75.2 -1.5 388 92-509 40-511 (624)
212 1klx_A Cysteine rich protein B 97.1 0.008 2.7E-07 50.3 12.3 107 323-438 8-123 (138)
213 3qww_A SET and MYND domain-con 97.0 0.00071 2.4E-08 68.8 5.9 82 425-506 311-410 (433)
214 1pc2_A Mitochondria fission pr 96.9 0.0038 1.3E-07 52.3 8.9 65 442-506 30-99 (152)
215 2kc7_A BFR218_protein; tetratr 96.9 0.0013 4.3E-08 51.3 5.6 78 418-503 6-86 (99)
216 3qww_A SET and MYND domain-con 96.9 0.0032 1.1E-07 64.0 10.0 94 388-481 310-424 (433)
217 1wy6_A Hypothetical protein ST 96.9 0.06 2E-06 43.3 14.6 140 352-510 18-157 (172)
218 3ma5_A Tetratricopeptide repea 96.9 0.0022 7.4E-08 50.2 6.6 84 5-90 6-90 (100)
219 3qwp_A SET and MYND domain-con 96.8 0.0051 1.8E-07 62.6 10.6 100 384-483 295-415 (429)
220 3mkq_A Coatomer beta'-subunit; 96.7 0.085 2.9E-06 58.8 20.8 101 217-334 660-760 (814)
221 2kc7_A BFR218_protein; tetratr 96.7 0.0032 1.1E-07 48.9 6.4 59 449-507 5-64 (99)
222 3mkq_A Coatomer beta'-subunit; 96.3 0.16 5.5E-06 56.5 19.7 129 81-234 633-761 (814)
223 3u64_A Protein TP_0956; tetrat 96.3 0.014 4.8E-07 54.5 8.7 87 428-514 179-276 (301)
224 2v5f_A Prolyl 4-hydroxylase su 96.1 0.03 1E-06 43.9 9.0 74 411-484 4-86 (104)
225 1qsa_A Protein (soluble lytic 96.1 1.9 6.3E-05 45.7 25.7 252 211-472 74-347 (618)
226 3ly7_A Transcriptional activat 96.0 0.047 1.6E-06 53.2 11.5 131 373-507 191-339 (372)
227 3bee_A Putative YFRE protein; 96.0 0.033 1.1E-06 42.6 8.2 68 409-476 3-75 (93)
228 1nzn_A CGI-135 protein, fissio 95.5 0.074 2.5E-06 42.8 8.8 65 442-506 33-102 (126)
229 1pc2_A Mitochondria fission pr 95.3 0.054 1.8E-06 45.3 7.6 73 410-482 30-109 (152)
230 3mkq_B Coatomer subunit alpha; 95.1 1.4 4.9E-05 37.7 16.1 129 318-470 13-141 (177)
231 3mkq_B Coatomer subunit alpha; 94.9 1.3 4.6E-05 37.9 15.2 102 217-335 13-114 (177)
232 1y8m_A FIS1; mitochondria, unk 94.6 0.58 2E-05 38.3 11.6 66 441-506 36-105 (144)
233 2v5f_A Prolyl 4-hydroxylase su 93.3 0.26 8.9E-06 38.4 7.4 64 443-506 4-74 (104)
234 3u64_A Protein TP_0956; tetrat 93.1 1.9 6.6E-05 40.2 13.7 49 188-236 218-267 (301)
235 4h7y_A Dual specificity protei 92.9 0.38 1.3E-05 39.7 7.6 55 456-510 72-126 (161)
236 4gns_B Protein CSD3, chitin bi 92.8 0.79 2.7E-05 49.5 12.3 53 452-504 345-397 (754)
237 4ady_A RPN2, 26S proteasome re 92.4 11 0.00039 41.5 20.7 92 9-104 148-257 (963)
238 1nzn_A CGI-135 protein, fissio 92.4 0.81 2.8E-05 36.7 8.9 73 410-482 33-112 (126)
239 3o48_A Mitochondria fission 1 91.5 0.63 2.2E-05 37.5 7.3 65 442-506 38-106 (134)
240 4h7y_A Dual specificity protei 90.2 5 0.00017 33.2 11.5 97 237-335 10-119 (161)
241 2wpv_A GET4, UPF0363 protein Y 89.7 14 0.00048 35.0 20.7 167 213-405 37-217 (312)
242 4ady_A RPN2, 26S proteasome re 89.5 29 0.00099 38.4 30.8 247 219-471 384-656 (963)
243 1wy6_A Hypothetical protein ST 89.3 7.6 0.00026 31.4 14.8 84 322-408 73-156 (172)
244 3lpz_A GET4 (YOR164C homolog); 88.9 17 0.00057 34.8 23.0 166 314-506 39-215 (336)
245 2ff4_A Probable regulatory pro 88.2 0.85 2.9E-05 45.4 7.0 68 447-514 174-246 (388)
246 2p58_C Putative type III secre 86.9 8.2 0.00028 29.1 9.6 88 188-280 21-108 (116)
247 2qx5_A Nucleoporin NIC96; mRNA 86.8 35 0.0012 36.2 19.7 44 10-55 156-199 (661)
248 2uwj_G Type III export protein 85.9 7.8 0.00027 29.2 9.0 88 188-280 20-107 (115)
249 3ffl_A Anaphase-promoting comp 84.9 5.3 0.00018 33.6 8.9 22 418-439 128-149 (167)
250 1v54_E Cytochrome C oxidase po 84.6 4.2 0.00014 30.8 7.2 62 357-420 26-87 (109)
251 2uwj_G Type III export protein 84.0 12 0.0004 28.2 9.3 86 291-381 22-107 (115)
252 3ltm_A Alpha-REP4; protein eng 83.8 22 0.00074 31.2 17.7 14 210-223 127-140 (211)
253 3lpz_A GET4 (YOR164C homolog); 83.8 31 0.0011 32.9 21.1 130 114-254 41-181 (336)
254 3ffl_A Anaphase-promoting comp 83.7 9 0.00031 32.2 9.8 63 8-71 22-92 (167)
255 2p58_C Putative type III secre 83.5 12 0.00043 28.2 9.9 87 290-381 22-108 (116)
256 3o48_A Mitochondria fission 1 82.6 5.8 0.0002 32.0 7.9 37 444-480 78-114 (134)
257 3txn_A 26S proteasome regulato 82.2 34 0.0012 33.6 15.1 159 343-501 21-204 (394)
258 4fhn_B Nucleoporin NUP120; pro 82.1 10 0.00035 43.7 13.1 124 382-511 818-971 (1139)
259 1wdy_A 2-5A-dependent ribonucl 81.8 20 0.00068 33.0 13.2 207 11-233 7-240 (285)
260 1y8m_A FIS1; mitochondria, unk 81.3 14 0.00049 30.1 9.9 72 409-480 36-113 (144)
261 2ff4_A Probable regulatory pro 81.2 10 0.00034 37.6 11.2 68 346-414 176-247 (388)
262 4b4t_P 26S proteasome regulato 80.9 37 0.0012 34.2 15.3 186 253-438 29-244 (445)
263 4fhn_B Nucleoporin NUP120; pro 80.7 29 0.001 39.9 16.2 165 212-394 815-989 (1139)
264 1v54_E Cytochrome C oxidase po 78.3 9.6 0.00033 28.9 7.2 61 156-217 27-87 (109)
265 4gns_B Protein CSD3, chitin bi 77.8 22 0.00075 38.4 12.9 52 386-439 347-398 (754)
266 2y69_E Cytochrome C oxidase su 77.5 8.9 0.0003 30.8 7.2 61 358-420 70-130 (152)
267 3mv2_A Coatomer subunit alpha; 74.7 38 0.0013 32.0 12.0 62 434-509 195-258 (325)
268 3ltj_A Alpharep-4; protein eng 74.4 42 0.0014 29.0 16.8 76 208-287 120-195 (201)
269 2wpv_A GET4, UPF0363 protein Y 74.2 60 0.002 30.7 23.4 167 314-506 37-216 (312)
270 1zbp_A Hypothetical protein VP 73.7 11 0.00038 34.6 8.0 50 387-438 8-57 (273)
271 1qsa_A Protein (soluble lytic 72.7 99 0.0034 32.5 34.2 197 153-366 228-438 (618)
272 1zbp_A Hypothetical protein VP 68.5 8.4 0.00029 35.4 6.0 57 421-477 6-64 (273)
273 1wdy_A 2-5A-dependent ribonucl 65.8 63 0.0022 29.4 12.2 16 319-334 225-240 (285)
274 2y69_E Cytochrome C oxidase su 64.3 37 0.0013 27.3 8.0 60 157-217 71-130 (152)
275 4b4t_R RPN7, 26S proteasome re 60.7 22 0.00075 35.6 8.1 92 414-505 133-235 (429)
276 1k1a_A B-cell lymphoma 3-encod 58.5 87 0.003 27.6 11.4 86 13-104 13-103 (241)
277 4b4t_R RPN7, 26S proteasome re 57.5 68 0.0023 32.0 11.1 60 344-403 134-195 (429)
278 3esl_A Checkpoint serine/threo 56.9 99 0.0034 26.9 12.9 103 429-557 61-169 (202)
279 2nsz_A Programmed cell death p 56.5 59 0.002 26.0 8.4 63 313-375 10-77 (129)
280 2qx5_A Nucleoporin NIC96; mRNA 53.5 2.3E+02 0.0077 30.0 24.2 28 477-504 532-564 (661)
281 3ltj_A Alpharep-4; protein eng 52.8 1.1E+02 0.0037 26.2 20.0 48 208-255 27-74 (201)
282 2zu6_B Programmed cell death p 51.5 1.6E+02 0.0055 27.7 13.6 26 213-238 7-32 (307)
283 3ltm_A Alpha-REP4; protein eng 51.4 1.2E+02 0.0041 26.2 19.3 18 273-290 93-110 (211)
284 1n11_A Ankyrin; clathrin, BAND 50.7 1.6E+02 0.0056 28.9 13.0 113 13-134 18-136 (437)
285 1k1a_A B-cell lymphoma 3-encod 50.3 76 0.0026 28.0 9.5 85 50-134 14-102 (241)
286 2ion_A PDCD4, programmed cell 48.1 54 0.0018 27.1 7.1 63 313-375 12-79 (152)
287 3eu9_A Huntingtin-interacting 47.2 61 0.0021 28.5 8.3 91 2-102 3-98 (240)
288 3kea_A K1L; tropism, ANK repea 44.9 1.4E+02 0.0048 27.4 10.6 186 39-235 26-218 (285)
289 3jxi_A Vanilloid receptor-rela 44.1 41 0.0014 30.5 6.6 95 9-105 6-118 (260)
290 3mv2_A Coatomer subunit alpha; 44.1 2E+02 0.007 27.0 11.0 30 343-372 209-238 (325)
291 4a1g_A Mitotic checkpoint seri 43.9 1.4E+02 0.0046 24.7 9.1 77 429-511 52-134 (152)
292 2pk8_A Uncharacterized protein 43.6 23 0.00078 26.0 3.4 29 536-564 14-42 (103)
293 2nsz_A Programmed cell death p 42.1 76 0.0026 25.3 6.9 63 213-275 11-78 (129)
294 2k0q_A Putative uncharacterize 41.7 8.6 0.0003 26.4 1.0 21 623-643 8-28 (74)
295 3mkr_B Coatomer subunit alpha; 41.6 90 0.0031 29.4 8.2 126 351-508 112-248 (320)
296 2pnn_A Transient receptor pote 41.1 80 0.0027 28.7 8.2 99 4-105 9-126 (273)
297 3eiq_C Programmed cell death p 39.9 2.6E+02 0.009 26.9 15.4 70 80-150 57-130 (358)
298 1n11_A Ankyrin; clathrin, BAND 39.9 1.1E+02 0.0038 30.1 9.6 21 115-135 18-38 (437)
299 2r9g_A AAA ATPase, central reg 38.9 1.7E+02 0.0057 25.4 8.7 62 245-307 16-85 (204)
300 2l0z_A Glycoprotein G2; zinc-b 38.7 7.9 0.00027 23.3 0.3 17 630-646 12-29 (42)
301 2wvi_A Mitotic checkpoint seri 38.6 1.7E+02 0.0059 24.4 8.8 49 463-511 79-129 (164)
302 3bqo_A Telomeric repeat-bindin 37.8 1.4E+02 0.0049 25.7 8.0 57 428-484 94-157 (211)
303 4gq2_M Nucleoporin NUP120; bet 37.5 2.7E+02 0.0093 31.1 12.9 51 382-438 816-866 (950)
304 3hra_A Ankyrin repeat family p 36.8 1.3E+02 0.0046 25.4 8.6 57 218-274 112-172 (201)
305 3i5p_A Nucleoporin NUP170; hel 36.7 3E+02 0.01 28.1 11.9 68 441-508 175-247 (525)
306 4b4t_P 26S proteasome regulato 36.7 3.3E+02 0.011 27.1 23.5 194 223-436 30-262 (445)
307 3esl_A Checkpoint serine/threo 36.5 2.1E+02 0.0073 24.8 10.2 53 357-410 95-148 (202)
308 1oyz_A Hypothetical protein YI 36.1 2.5E+02 0.0084 25.4 18.9 245 98-351 27-277 (280)
309 3ljn_A Hypothetical protein; a 35.6 1.3E+02 0.0046 28.6 9.2 18 217-234 178-195 (364)
310 2d2s_A Exocyst complex compone 35.2 1E+02 0.0036 27.6 7.4 30 409-438 88-117 (235)
311 4a1g_A Mitotic checkpoint seri 35.1 65 0.0022 26.6 5.5 58 61-118 84-142 (152)
312 3b7b_A Euchromatic histone-lys 34.1 1.5E+02 0.005 26.0 8.6 199 62-269 24-236 (237)
313 4b4t_S RPN3, 26S proteasome re 34.0 1E+02 0.0035 31.4 7.8 60 377-438 232-296 (523)
314 2ion_A PDCD4, programmed cell 33.4 71 0.0024 26.4 5.6 63 213-275 13-80 (152)
315 3hra_A Ankyrin repeat family p 32.8 1.4E+02 0.0046 25.3 7.9 79 17-101 13-93 (201)
316 2wvi_A Mitotic checkpoint seri 32.6 1.3E+02 0.0043 25.3 6.9 57 61-117 79-136 (164)
317 2fe3_A Peroxide operon regulat 32.3 83 0.0028 25.6 5.8 46 139-184 21-66 (145)
318 3eu9_A Huntingtin-interacting 32.1 1.6E+02 0.0054 25.6 8.5 16 87-102 16-31 (240)
319 3bge_A Predicted ATPase; struc 30.5 2E+02 0.0069 24.8 7.8 45 245-289 9-56 (201)
320 2hgo_A CASSIICOLIN; toxin, dis 30.4 10 0.00034 19.7 -0.1 13 635-647 8-22 (27)
321 3jxi_A Vanilloid receptor-rela 30.3 72 0.0025 28.7 5.8 53 148-200 11-72 (260)
322 3ljn_A Hypothetical protein; a 30.3 84 0.0029 30.2 6.6 14 424-437 253-266 (364)
323 4b4t_S RPN3, 26S proteasome re 30.0 2.4E+02 0.0081 28.8 9.7 66 412-477 231-303 (523)
324 3kea_A K1L; tropism, ANK repea 30.0 1E+02 0.0034 28.4 6.8 91 419-513 133-223 (285)
325 2d2s_A Exocyst complex compone 29.8 1.6E+02 0.0055 26.3 7.7 23 145-167 24-46 (235)
326 2zu6_B Programmed cell death p 29.3 1.4E+02 0.0048 28.0 7.5 69 243-312 169-239 (307)
327 3ctd_A Putative ATPase, AAA fa 26.8 2.7E+02 0.0094 24.3 8.1 63 244-306 36-106 (213)
328 2lo3_A SAGA-associated factor 26.4 25 0.00087 21.4 1.1 13 603-615 16-28 (44)
329 3aji_A 26S proteasome non-ATPa 26.4 2.8E+02 0.0096 23.9 9.1 87 11-103 8-96 (231)
330 2fe3_A Peroxide operon regulat 26.2 1.5E+02 0.0052 24.0 6.5 63 365-429 11-73 (145)
331 3bu8_A Telomeric repeat-bindin 26.0 2.6E+02 0.0089 24.5 7.7 47 392-438 88-140 (235)
332 2xig_A Ferric uptake regulatio 25.5 1.2E+02 0.004 24.9 5.6 33 144-176 31-63 (150)
333 1qc6_A EVH1 domain from ENA/VA 25.0 22 0.00076 28.6 1.0 40 595-642 44-87 (130)
334 1ya0_A SMG-7 transcript varian 24.7 1.4E+02 0.0048 30.3 7.1 75 415-489 155-231 (497)
335 2r9g_A AAA ATPase, central reg 24.7 3.4E+02 0.012 23.5 8.6 65 140-205 12-84 (204)
336 4aez_C MAD3, mitotic spindle c 24.6 1.1E+02 0.0039 27.0 5.5 58 59-116 131-189 (223)
337 4ets_A Ferric uptake regulatio 24.3 97 0.0033 25.9 4.9 58 166-224 25-84 (162)
338 1ug3_A EIF4GI, eukaryotic prot 23.8 4.7E+02 0.016 24.7 11.6 91 213-303 15-113 (339)
339 2rfa_A Transient receptor pote 23.1 3.1E+02 0.011 23.6 8.7 53 181-234 158-219 (232)
340 3ygs_P Procaspase 9; apoptosis 22.8 94 0.0032 23.3 4.1 38 223-260 51-88 (97)
341 2xig_A Ferric uptake regulatio 22.1 2.3E+02 0.0079 23.0 6.8 63 365-429 16-78 (150)
342 3ygs_P Procaspase 9; apoptosis 22.0 93 0.0032 23.3 3.9 27 92-118 52-78 (97)
343 3t8k_A Uncharacterized protein 20.8 3.7E+02 0.013 22.5 9.5 63 146-208 42-108 (186)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-41 Score=370.08 Aligned_cols=476 Identities=9% Similarity=-0.045 Sum_probs=393.0
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHH
Q 006388 18 SHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSPLVDMYAKLGLIYDAK 97 (647)
Q Consensus 18 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 97 (647)
+.|....+...+..+. .++...|+.++..+.+.|++++|..+++++.+.. |+..++..++.+|.+.|++++|.
T Consensus 65 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 65 TDGSFLKERNAQNTDS-----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccCccCCCCCccccch-----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCchHHHHHHHHHHHcCcHHHHH
Confidence 3444555555555443 4577788889999999999999999998888643 56678888889999999999999
Q ss_pred HHhccCC--CCCchHHHHHHHHHHhcCChHHHHHHhhcCCCC-------------------CeehHHHHHHHHHhCCChh
Q 006388 98 RGFDELP--EKNIVMYNTMITGLLRRGLVEESRRLFRGMKDK-------------------DSISWTTMITGLMQNGLER 156 (647)
Q Consensus 98 ~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~ 156 (647)
.+|+.+. .++..+|+.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|+++
T Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 138 CLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 9998884 578888999999999999999999999854433 3789999999999999999
Q ss_pred HHHHHHHHHHHCCCCCChh-hHHHHHHHHhcCCChHHH--HHH-HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 006388 157 EAIDLFREMRLEGLAMDQF-TFGSVLTACGGLLALEEG--KQI-HAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVF 232 (647)
Q Consensus 157 ~A~~~~~~m~~~g~~pd~~-t~~~ll~~~~~~~~~~~a--~~~-~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 232 (647)
+|+++|++|.+.+ |+.. .+..+...+...+..+.+ ..+ +..+...+......+++.++.+|.+.|++++|.++|
T Consensus 218 ~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 218 RAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 9999999998854 4443 444444333332222211 111 344444444555667788899999999999999999
Q ss_pred hcCCC--CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcch
Q 006388 233 RTMAW--KNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFI 310 (647)
Q Consensus 233 ~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~ 310 (647)
+++.. +++.+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.++...|+.++|..++..+.+.. +.+.
T Consensus 296 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 373 (597)
T 2xpi_A 296 SSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKA 373 (597)
T ss_dssp HTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSH
T ss_pred HHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccH
Confidence 99987 799999999999999999999999999999765 3467889999999999999999999999998664 5678
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 006388 311 TVSNALVTFYGKCGNIEDSHRLFNEMN---VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACS 387 (647)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 387 (647)
.+++.++.+|.++|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+.+ +++..++..++.+|.
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHM 452 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 899999999999999999999999875 4578899999999999999999999999999863 457789999999999
Q ss_pred cCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC--hhhHHHHHHHHHhcC
Q 006388 388 RAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-------PFPPD--AIGWATLLSSCRIHG 458 (647)
Q Consensus 388 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~ll~~~~~~~ 458 (647)
+.|++++|.++|+.+.+. .+.+..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|
T Consensus 453 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp HHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence 999999999999999874 3446889999999999999999999999988 45777 789999999999999
Q ss_pred ChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhC
Q 006388 459 NVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 459 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 507 (647)
++++|+..++++++.+|+++.+|..++.+|.+.|++++|.++++++.+.
T Consensus 531 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999874
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-41 Score=370.63 Aligned_cols=480 Identities=8% Similarity=-0.053 Sum_probs=414.9
Q ss_pred CCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhH
Q 006388 1 MPFHDGVSWNLLISGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVG 80 (647)
Q Consensus 1 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 80 (647)
+|.+++..|+.++..|.+.|++++|+.+|++|... .||..++..++.+|...|++++|..+++.+... ++++.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 153 (597)
T 2xpi_A 79 DSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACR 153 (597)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHH
T ss_pred chHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHH
Confidence 35678889999999999999999999999999964 568899999999999999999999999988654 6789999
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCCC-------------------CchHHHHHHHHHHhcCChHHHHHHhhcCCCC---C
Q 006388 81 SPLVDMYAKLGLIYDAKRGFDELPEK-------------------NIVMYNTMITGLLRRGLVEESRRLFRGMKDK---D 138 (647)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~ 138 (647)
+.++.+|.++|++++|.++|+++... +..+|+.++.+|.+.|++++|.++|+++.+. +
T Consensus 154 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 233 (597)
T 2xpi_A 154 YLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKC 233 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchh
Confidence 99999999999999999999965433 4789999999999999999999999998753 3
Q ss_pred eehHHHHHHHHHhCCChhHHHH--H-HHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 006388 139 SISWTTMITGLMQNGLEREAID--L-FREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSAL 215 (647)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~--~-~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 215 (647)
...|..+...+...+..+.+.. + +..+...+..++..+|+.++..|.+.|++++|.++++.+.+. +++..+++.+
T Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l 311 (597)
T 2xpi_A 234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCK 311 (597)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHH
T ss_pred hHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHH
Confidence 3455555554444433332222 1 555555555556667777888899999999999999998876 5889999999
Q ss_pred HHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 006388 216 VDMYCKCKSIKYAESVFRTMA---WKNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLE 292 (647)
Q Consensus 216 i~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 292 (647)
+.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|..+|+++.+.. +.+..++..+...+.+.|+++
T Consensus 312 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 390 (597)
T 2xpi_A 312 ADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKIS 390 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHH
Confidence 999999999999999999985 3477899999999999999999999999998653 456789999999999999999
Q ss_pred HHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 006388 293 EGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMN---VRDEVSWTALVSGYAKFGKANETIDLFEKMLS 369 (647)
Q Consensus 293 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (647)
+|.+++..+.+.. +.+..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+
T Consensus 391 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 391 EARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999998864 4567899999999999999999999999875 44789999999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc---CCCcC--hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-
Q 006388 370 HGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEY---GIRPI--HDHYTCMIDILSRAGRLEEAKSFINKM-PFPP- 442 (647)
Q Consensus 370 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p- 442 (647)
.. +.+..+|..++..|.+.|++++|.++|+.+.+.. +..|+ ..+|..++.+|.+.|++++|.++++++ ...|
T Consensus 470 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 470 LF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 53 3467899999999999999999999999997643 55777 789999999999999999999999988 3334
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhh
Q 006388 443 DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYAS 490 (647)
Q Consensus 443 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 490 (647)
+..+|..+..+|...|++++|...++++++++|+++..+..|+++|..
T Consensus 549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 549 DANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 689999999999999999999999999999999999999999999864
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=6e-28 Score=253.15 Aligned_cols=183 Identities=13% Similarity=0.186 Sum_probs=153.8
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC---------hHHHHHHHHHHHHhCCCcchh
Q 006388 241 VSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLAS---------LEEGTQFHGRSLVTGLISFIT 311 (647)
Q Consensus 241 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 311 (647)
..++.+|.+|++.|+.++|+++|++|.+.|++||..||+++|.+|+..+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35677788888888888888888888888888888888888888876543 577888888888888888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcC----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 006388 312 VSNALVTFYGKCGNIEDSHRLFNEMN----VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACS 387 (647)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~~~----~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 387 (647)
+||+||.+|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+++|.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 88888888888888888888888876 56888888888888888888888888888888888888888888888888
Q ss_pred cCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHH
Q 006388 388 RAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSR 424 (647)
Q Consensus 388 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 424 (647)
+.|++++|.++|++|.+. +..|+..+|+.++..+.+
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhc
Confidence 888888888888888765 888888888888888765
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.4e-25 Score=230.74 Aligned_cols=343 Identities=11% Similarity=0.064 Sum_probs=197.5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 006388 142 WTTMITGLMQNGLEREAIDLFREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCK 221 (647)
Q Consensus 142 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 221 (647)
+..+...+.+.|++++|...++...+.. +.+..++..+...+...|++++|.+.++.+++.. +.+...+..+..+|.+
T Consensus 36 ~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 113 (388)
T 1w3b_A 36 LLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVA 113 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH
Confidence 3333344444444444444444443321 1233344444444444444444444444444432 2223344445555555
Q ss_pred cCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 006388 222 CKSIKYAESVFRTMAW---KNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFH 298 (647)
Q Consensus 222 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 298 (647)
.|++++|.+.|+++.. .+...+..+...+...|++++|.+.|+++.... +-+..++..+...+...|++++|...+
T Consensus 114 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 192 (388)
T 1w3b_A 114 AGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHF 192 (388)
T ss_dssp HSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555555544431 123344445555555555555555555554431 112344555555555555555555555
Q ss_pred HHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 006388 299 GRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMN---VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPD 375 (647)
Q Consensus 299 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 375 (647)
+.+.+.+ +.+...+..+...+...|++++|...|++.. ..+..+|..+...|...|++++|+..|+++.+. .|+
T Consensus 193 ~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~ 269 (388)
T 1w3b_A 193 EKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPH 269 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSS
T ss_pred HHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCC
Confidence 5555543 2334455556666666666666666666543 234566777777777777777777777777764 333
Q ss_pred -HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-hhhHHHHHH
Q 006388 376 -EVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPPD-AIGWATLLS 452 (647)
Q Consensus 376 -~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~ 452 (647)
..++..+..++.+.|++++|...|+.+.+. .+++...+..+...+.+.|++++|.+.++++ ...|+ ..+|..+..
T Consensus 270 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 347 (388)
T 1w3b_A 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS 347 (388)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 446667777777777777777777777653 3445667777777777777777777777776 33443 667777777
Q ss_pred HHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCC
Q 006388 453 SCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKG 492 (647)
Q Consensus 453 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 492 (647)
.+.+.|++++|...+++++++.|+++..|..++.+|...|
T Consensus 348 ~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 348 VLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 7777777777777777777777777777777777766655
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=9e-25 Score=224.78 Aligned_cols=352 Identities=16% Similarity=0.120 Sum_probs=307.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 006388 145 MITGLMQNGLEREAIDLFREMRLEGLAMDQ-FTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCK 223 (647)
Q Consensus 145 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 223 (647)
+...+.+.|++++|.+.+.++.+. .|+. ..+..+...+...|++++|...+...++.. +.+..++..+...|.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 345678889999999999998775 3554 455666677788999999999999998875 667889999999999999
Q ss_pred CHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChHHHHHHHH
Q 006388 224 SIKYAESVFRTMAW---KNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDD-FTLGSVISSCANLASLEEGTQFHG 299 (647)
Q Consensus 224 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~ 299 (647)
++++|...|+++.. .+..+|..+..++.+.|++++|++.|+++.+. .|+. ..+..+...+...|++++|...+.
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999998753 35678999999999999999999999999875 4655 456667778888999999999999
Q ss_pred HHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-
Q 006388 300 RSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMN---VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPD- 375 (647)
Q Consensus 300 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~- 375 (647)
.+.+.. +.+..++..+...|.+.|++++|...|+++. ..+...|..+...+...|++++|+..|++.... .|+
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~ 236 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNH 236 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTC
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCC
Confidence 999875 4567889999999999999999999999886 346778999999999999999999999999874 454
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCChhhHHHHHHH
Q 006388 376 EVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-P-FPPDAIGWATLLSS 453 (647)
Q Consensus 376 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~ 453 (647)
..++..+..++...|++++|...|+.+.+. .+.+...|..+...|.+.|++++|.+.++++ . .+++..+|..+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 668889999999999999999999999863 2335678999999999999999999999988 2 33468899999999
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 454 CRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 454 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
+...|++++|...++++++..|+++.++..++.+|.+.|++++|.+.++++.+
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999986
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=3.6e-27 Score=247.22 Aligned_cols=184 Identities=15% Similarity=0.169 Sum_probs=173.6
Q ss_pred ehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCC---------hHHHHHHHHHHHHcCCCCchh
Q 006388 140 ISWTTMITGLMQNGLEREAIDLFREMRLEGLAMDQFTFGSVLTACGGLLA---------LEEGKQIHAFIIRNDHKDNVF 210 (647)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~~~~~ 210 (647)
..++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45888999999999999999999999999999999999999999987654 688999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC----CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 006388 211 VGSALVDMYCKCKSIKYAESVFRTMA----WKNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCA 286 (647)
Q Consensus 211 ~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 286 (647)
+||+||++|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+++|.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999996 46999999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhc
Q 006388 287 NLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKC 323 (647)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 323 (647)
+.|++++|.+++++|.+.+..|+..+|+.++..|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999988764
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=6.2e-23 Score=219.24 Aligned_cols=95 Identities=17% Similarity=0.086 Sum_probs=76.9
Q ss_pred cccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHHHHH
Q 006388 6 GVSWNLLISGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSPLVD 85 (647)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 85 (647)
+..|-.+...+.+.|++++|+..|+++.+.. ||..+|..+..++...|++++|...++.+++.. +.+...+..+..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence 3456777788888899999999999888874 578888888888888888888888888888876 456677788888
Q ss_pred HHHhcCChHHHHHHhccCC
Q 006388 86 MYAKLGLIYDAKRGFDELP 104 (647)
Q Consensus 86 ~~~~~g~~~~A~~~~~~~~ 104 (647)
+|.+.|++++|...|+.+.
T Consensus 82 ~~~~~g~~~~A~~~~~~~~ 100 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLS 100 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 8888888888888887664
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=4e-22 Score=212.93 Aligned_cols=392 Identities=8% Similarity=-0.028 Sum_probs=317.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHhhcCCC--CCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 006388 109 VMYNTMITGLLRRGLVEESRRLFRGMKD--KDSISWTTMITGLMQNGLEREAIDLFREMRLEGLAMDQFTFGSVLTACGG 186 (647)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~ 186 (647)
..|......+.+.|++++|...|+++.+ |+..+|..+...|.+.|++++|+..|+++.+.+ +.+..++..+..++..
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 4677788899999999999999998864 788889999999999999999999999998854 2245688889999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHh---------------------------------
Q 006388 187 LLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFR--------------------------------- 233 (647)
Q Consensus 187 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~--------------------------------- 233 (647)
.|++++|...+..+.+.+. ++......++..+.+......+.+.+.
T Consensus 86 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 9999999999999998863 344444444444443322222222221
Q ss_pred -----cCC----------CCChhHHHHHHHHHHh---cCChhHHHHHHHHHHH-----CCCCC--------CHHHHHHHH
Q 006388 234 -----TMA----------WKNVVSWTAMLVGYGQ---NGCSEEAVKIFCNMQR-----NGIEP--------DDFTLGSVI 282 (647)
Q Consensus 234 -----~~~----------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~t~~~ll 282 (647)
... ..+...|..+...+.. .|++++|+..|+++.. ..-.| +..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 110 0113445555555554 8999999999999987 32222 245677788
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHH
Q 006388 283 SSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMN---VRDEVSWTALVSGYAKFGKANE 359 (647)
Q Consensus 283 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~ 359 (647)
..+...|+++.|...+..+.+.... ..++..+...|...|++++|.+.|+++. ..+...|..+...|...|++++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 8889999999999999999988644 8888999999999999999999999875 3367789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 006388 360 TIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM- 438 (647)
Q Consensus 360 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~- 438 (647)
|+..|++..+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++
T Consensus 323 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 323 AGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999863 335568888999999999999999999999874 2345678999999999999999999999887
Q ss_pred ---CCCCC----hhhHHHHHHHHHh---cCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhC
Q 006388 439 ---PFPPD----AIGWATLLSSCRI---HGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 439 ---~~~p~----~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 507 (647)
+..|+ ...|..+...+.. .|++++|...++++++..|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 22233 3489999999999 999999999999999999999999999999999999999999999998874
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=1.4e-21 Score=204.98 Aligned_cols=338 Identities=12% Similarity=0.043 Sum_probs=234.1
Q ss_pred CeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 006388 138 DSISWTTMITGLMQNGLEREAIDLFREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVD 217 (647)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 217 (647)
+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...+..+++.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 45567777777788888888888888777642 2345566677777777777777777777777664 344566667777
Q ss_pred HHHhcCCHHHHHHHHhcCCCCC---h---hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 006388 218 MYCKCKSIKYAESVFRTMAWKN---V---VSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASL 291 (647)
Q Consensus 218 ~y~~~g~~~~A~~~~~~~~~~~---~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 291 (647)
+|.+.|++++|...|+++...+ . .+|..++..+...+ +..+...+...|++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-----------------------LRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHcCCH
Confidence 7777777777777777665432 2 45555544311111 11112223334455
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 006388 292 EEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMN---VRDEVSWTALVSGYAKFGKANETIDLFEKML 368 (647)
Q Consensus 292 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~ 368 (647)
++|...+..+.+.. +.+..++..+..+|.+.|++++|.+.|+++. ..+..+|..+...|...|++++|+..|+++.
T Consensus 160 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 160 TAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555544432 3344555666666666666666666666654 3466777778888888888888888888887
Q ss_pred HCCCCCCHH-HHHHH------------HHHHhcCCcHHHHHHHHHHHHHhcCCCcC--hHHHHHHHHHHHHcCCHHHHHH
Q 006388 369 SHGLKPDEV-TLIGV------------LSACSRAGLVEKGRHYFEIMVKEYGIRPI--HDHYTCMIDILSRAGRLEEAKS 433 (647)
Q Consensus 369 ~~g~~p~~~-t~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~ 433 (647)
.. .|+.. .+..+ ..+|.+.|++++|..+|+.+.+...-.|. ..+|..++.++.+.|++++|.+
T Consensus 239 ~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 316 (450)
T 2y4t_A 239 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIR 316 (450)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred Hh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 63 45443 33333 67888999999999999999864222222 4588999999999999999999
Q ss_pred HHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHH------------HhhhhCC-----Ch
Q 006388 434 FINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLS------------SIYASKG-----KW 494 (647)
Q Consensus 434 ~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-----~~ 494 (647)
.++++ ...| +..+|..+..+|...|++++|...++++++++|+++..+..++ +.|...| +.
T Consensus 317 ~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~ 396 (450)
T 2y4t_A 317 VCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKK 396 (450)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCH
Confidence 99987 4445 5889999999999999999999999999999999999999998 6677777 45
Q ss_pred hHHHHHHHH
Q 006388 495 DHVSQLRRT 503 (647)
Q Consensus 495 ~~a~~~~~~ 503 (647)
+++.+.+++
T Consensus 397 ~~~~~~y~~ 405 (450)
T 2y4t_A 397 QEIIKAYRK 405 (450)
T ss_dssp THHHHHHHH
T ss_pred HHHHHHHHH
Confidence 566666665
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=1.4e-21 Score=209.96 Aligned_cols=420 Identities=11% Similarity=0.049 Sum_probs=217.2
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHH
Q 006388 8 SWNLLISGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSPLVDMY 87 (647)
Q Consensus 8 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 87 (647)
.|..+...+.+.|++++|++.|+++.+.. |.+..++..+..++...|++++|.+.++.+++.. +.+...+..+..+|
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 45555666666666666666666666654 4555666666666666666666666666666654 34455555555556
Q ss_pred HhcCChHHHHHHhccCCCCCchHHHHHHHHHHhcCChHHHHHHhhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHH
Q 006388 88 AKLGLIYDAKRGFDELPEKNIVMYNTMITGLLRRGLVEESRRLFRGMKDKDSISWTTMITGLMQNGLEREAIDLFREMRL 167 (647)
Q Consensus 88 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 167 (647)
.+.|++++|...|+.+. .++...+..+..+...+...+|...++++..
T Consensus 104 ~~~g~~~~A~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~ 151 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLS--------------------------------LNGDFDGASIEPMLERNLNKQAMKVLNENLS 151 (537)
T ss_dssp HHHTCHHHHHHHHHHHC-------------------------------------------CHHHHHHHHHHHHHHHHHCC
T ss_pred HHcCCHHHHHHHHHHHh--------------------------------cCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666655554322 1111222223344444555677777777644
Q ss_pred C------CCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCch---hHHHHHHHHHHhc--------CCHHHHHH
Q 006388 168 E------GLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNV---FVGSALVDMYCKC--------KSIKYAES 230 (647)
Q Consensus 168 ~------g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~li~~y~~~--------g~~~~A~~ 230 (647)
. ...|+.......+ ...+.+.+...+... ...+. .....+...+... |++++|..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~ 223 (537)
T 3fp2_A 152 KDEGRGSQVLPSNTSLASFF----GIFDSHLEVSSVNTS----SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTD 223 (537)
T ss_dssp -------CCCCCHHHHHHHH----HTSCHHHHHHTSCCC----CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHH
T ss_pred hCccccccccchHhHHHHHH----HhcChHHHHHHHhhc----cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 2 1223322222221 122222221111110 01111 1222333222221 24444555
Q ss_pred HHhcCCCCC----------hhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 006388 231 VFRTMAWKN----------VVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGR 300 (647)
Q Consensus 231 ~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 300 (647)
+|+++...+ ..+|..+...+...|++++|+..|+++... .|+...+..+...+...|+++.|...+..
T Consensus 224 ~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 301 (537)
T 3fp2_A 224 MYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQK 301 (537)
T ss_dssp HHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHH
T ss_pred HHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 444443221 112333344444444555555555444442 23333444444444444444444444444
Q ss_pred HHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 006388 301 SLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLI 380 (647)
Q Consensus 301 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 380 (647)
+.+.. ..+..+|..+...|...|++++|+..|++..+.. +.+...+.
T Consensus 302 ~~~~~--------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 348 (537)
T 3fp2_A 302 AVDLN--------------------------------PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYI 348 (537)
T ss_dssp HHHHC--------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHH
T ss_pred HhccC--------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 44332 2244556666666666666666666666666532 12234566
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCC----ChhhHHHHHH
Q 006388 381 GVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM----PFPP----DAIGWATLLS 452 (647)
Q Consensus 381 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p----~~~~~~~ll~ 452 (647)
.+...+...|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.++++ |..+ ....+..+..
T Consensus 349 ~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~ 426 (537)
T 3fp2_A 349 QLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKAT 426 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHH
Confidence 6666666666777777666666553 2334456666677777777777777776665 1111 1222334445
Q ss_pred HHHhc----------CChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhC
Q 006388 453 SCRIH----------GNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 453 ~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 507 (647)
.+... |++++|...++++++..|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 427 ILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 56666 77788888888888778877777788888888888888888888777663
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=1.2e-20 Score=197.83 Aligned_cols=372 Identities=10% Similarity=-0.023 Sum_probs=197.1
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHhccCCC---CCchHHHHHHHHHHhcCChHHHHHHhhcCCC---CCeehHHHHHHH
Q 006388 75 SYVFVGSPLVDMYAKLGLIYDAKRGFDELPE---KNIVMYNTMITGLLRRGLVEESRRLFRGMKD---KDSISWTTMITG 148 (647)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 148 (647)
.++..+..+...|.+.|++++|..+|+.+.+ .+..+|..+...+.+.|++++|...|+++.+ .+..+|..+...
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 3444455555555555555555555554431 1223333333333333333333333333221 134455555555
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCh----hhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 006388 149 LMQNGLEREAIDLFREMRLEGLAMDQ----FTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKS 224 (647)
Q Consensus 149 ~~~~g~~~~A~~~~~~m~~~g~~pd~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 224 (647)
|.+.|++++|...|+++.+. .|+. ..+..+...+. ...+..+...|.+.|+
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDE-----------------------MQRLRSQALNAFGSGD 158 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHcCC
Confidence 66666666666666555542 2222 12222221110 0011223444566666
Q ss_pred HHHHHHHHhcCC---CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 006388 225 IKYAESVFRTMA---WKNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRS 301 (647)
Q Consensus 225 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 301 (647)
+++|...|+++. ..+..+|..+...|.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...+..+
T Consensus 159 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 159 YTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666666543 2345566666666666666666666666665432 223445555555555555555555555555
Q ss_pred HHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-----H
Q 006388 302 LVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPD-----E 376 (647)
Q Consensus 302 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~ 376 (647)
.+.. +.+...+..+... + ....+..+...+...|++++|+..|+++.+. .|+ .
T Consensus 238 ~~~~-p~~~~~~~~~~~~----~---------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~ 295 (450)
T 2y4t_A 238 LKLD-QDHKRCFAHYKQV----K---------------KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTV 295 (450)
T ss_dssp HHHC-TTCHHHHHHHHHH----H---------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHH
T ss_pred HHhC-CChHHHHHHHHHH----H---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHH
Confidence 5432 1122222211000 0 0001122366777778888888888877763 444 2
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHH-
Q 006388 377 VTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPPD-AIGWATLLSS- 453 (647)
Q Consensus 377 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~- 453 (647)
..+..+..++.+.|++++|...++.+.+. .+.+...|..+..+|...|++++|.+.++++ ...|+ ...+..+..+
T Consensus 296 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 373 (450)
T 2y4t_A 296 RSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQ 373 (450)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 35666777777788888888888777653 2335677777888888888888888888776 45554 4555555532
Q ss_pred -----------HHhcC-----ChhHHHHHHHH-HhccCCCCc----------hhHHHHHHhhhhCCChhH
Q 006388 454 -----------CRIHG-----NVEIGKWAAES-LLELDPYNP----------ASYVLLSSIYASKGKWDH 496 (647)
Q Consensus 454 -----------~~~~~-----~~~~a~~~~~~-~~~~~p~~~----------~~~~~l~~~~~~~g~~~~ 496 (647)
|...| +.+++.+.+++ .++..|++. ..+..+..+|...|+.+.
T Consensus 374 ~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 374 RLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 22233 56777888886 677777632 145556666666665544
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=9.9e-18 Score=169.56 Aligned_cols=305 Identities=11% Similarity=0.024 Sum_probs=216.1
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHH
Q 006388 174 QFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMAW---KNVVSWTAMLVGY 250 (647)
Q Consensus 174 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 250 (647)
...+..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|...|+++.. .+...|..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 3456666777777888888888888887764 44566777777888888888888888877642 3556777777888
Q ss_pred HhcCChhHHHHHHHHHHHCCCCC---CHH-HHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCH
Q 006388 251 GQNGCSEEAVKIFCNMQRNGIEP---DDF-TLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNI 326 (647)
Q Consensus 251 ~~~g~~~~A~~~~~~m~~~g~~p---~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 326 (647)
...|++++|+..|+++.+. .| +.. .+..+.... . ...+..+...+...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHccCH
Confidence 8888888888888877764 34 222 222221100 0 01122345667777788
Q ss_pred HHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 006388 327 EDSHRLFNEMN---VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMV 403 (647)
Q Consensus 327 ~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 403 (647)
++|.+.|+++. ..+...|..+...+...|++++|+..+++..+.. +.+..++..+...+...|++++|...|+...
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88877777764 3456677777778888888888888888877652 3345577777777778888888888888776
Q ss_pred HhcCCCcChHHHH------------HHHHHHHHcCCHHHHHHHHHhC-CCCCC-h----hhHHHHHHHHHhcCChhHHHH
Q 006388 404 KEYGIRPIHDHYT------------CMIDILSRAGRLEEAKSFINKM-PFPPD-A----IGWATLLSSCRIHGNVEIGKW 465 (647)
Q Consensus 404 ~~~~~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~ll~~~~~~~~~~~a~~ 465 (647)
+... .+...+. .+...+.+.|++++|.+.++++ ...|+ . ..+..+...+...|++++|..
T Consensus 216 ~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KLDQ--DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHCT--TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhCc--cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 5422 2222222 3366788899999999998887 33343 2 235567778889999999999
Q ss_pred HHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhC
Q 006388 466 AAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 466 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 507 (647)
.++++++.+|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999988764
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=1.2e-17 Score=168.84 Aligned_cols=325 Identities=11% Similarity=0.016 Sum_probs=237.2
Q ss_pred CeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 006388 138 DSISWTTMITGLMQNGLEREAIDLFREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVD 217 (647)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 217 (647)
|+..|..+...+.+.|++++|+..|+++.+... .+..++..+...+...|++++|...++.+++.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 345678888999999999999999999988532 356788888899999999999999999999875 446788999999
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCh------hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 006388 218 MYCKCKSIKYAESVFRTMAWKNV------VSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASL 291 (647)
Q Consensus 218 ~y~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 291 (647)
+|.+.|++++|...|++....++ ..|..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 99999999999999998865433 34444421100 00112223334445555
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 006388 292 EEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMN---VRDEVSWTALVSGYAKFGKANETIDLFEKML 368 (647)
Q Consensus 292 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~ 368 (647)
++|...+..+.+.. +.+..++..+...|...|++++|...|+++. ..+...|..+...|...|++++|...|++..
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555554443 3344556666667777777777777776654 2356677777777888888888888888777
Q ss_pred HCCCCCCHH-HHH------------HHHHHHhcCCcHHHHHHHHHHHHHhcCCCcCh--HHHHHHHHHHHHcCCHHHHHH
Q 006388 369 SHGLKPDEV-TLI------------GVLSACSRAGLVEKGRHYFEIMVKEYGIRPIH--DHYTCMIDILSRAGRLEEAKS 433 (647)
Q Consensus 369 ~~g~~p~~~-t~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~ 433 (647)
+. .|+.. .+. .+...+...|++++|...++.+.+...-.+.. ..+..+...|...|++++|.+
T Consensus 216 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 64 33332 222 23556888999999999999988753222211 345668889999999999999
Q ss_pred HHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhh
Q 006388 434 FINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYAS 490 (647)
Q Consensus 434 ~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 490 (647)
.+++. ...| +..+|..+...+...|++++|...++++++++|+++..+..+..++..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 99887 3345 588999999999999999999999999999999998888887776544
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.82 E-value=1.5e-17 Score=178.46 Aligned_cols=389 Identities=9% Similarity=-0.039 Sum_probs=229.4
Q ss_pred CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHHH
Q 006388 4 HDGVSWNLLISGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSPL 83 (647)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 83 (647)
.++.+|..+...|.+.|++++|++.|+++.+.+ |.+..++..+...+...|++++|...++ .+... |+ ..+..
T Consensus 57 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~--~~--~~~~~ 129 (537)
T 3fp2_A 57 NEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLGNFTDAMFDLS-VLSLN--GD--FDGAS 129 (537)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-------------
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcC--CC--CChHH
Confidence 467789999999999999999999999999987 7788899999999999999999999996 33322 22 22233
Q ss_pred HHHHHhcCChHHHHHHhccCCCC------CchHHHHHHHHHHhcCChHHHHHHhhcCCCCCee---hHHHHHHHHHhC--
Q 006388 84 VDMYAKLGLIYDAKRGFDELPEK------NIVMYNTMITGLLRRGLVEESRRLFRGMKDKDSI---SWTTMITGLMQN-- 152 (647)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~-- 152 (647)
+..+...+....|...++.+... ........+..+....+.+.+...+......+.. .+..+...+...
T Consensus 130 ~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 209 (537)
T 3fp2_A 130 IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDE 209 (537)
T ss_dssp --CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhh
Confidence 44555666677888888877542 2233455666777788888888888877765544 333443333322
Q ss_pred ------CChhHHHHHHHHHHHCCCCCCh--------hhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 006388 153 ------GLEREAIDLFREMRLEGLAMDQ--------FTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDM 218 (647)
Q Consensus 153 ------g~~~~A~~~~~~m~~~g~~pd~--------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 218 (647)
|++++|+.+|+++.+.. |+. .++..+...+...|++++|.+.+..+++.. |+..++..+...
T Consensus 210 ~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 285 (537)
T 3fp2_A 210 GYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALT 285 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHH
Confidence 47788888888887643 332 134444455566667777777777666653 335556666666
Q ss_pred HHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHH
Q 006388 219 YCKCKSIKYAESVFRTMA---WKNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGT 295 (647)
Q Consensus 219 y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 295 (647)
|.+.|++++|...|++.. ..+..+|..+...+...|++++|+..|++..... +.+...+..+..++...|++++|.
T Consensus 286 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 364 (537)
T 3fp2_A 286 LADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESE 364 (537)
T ss_dssp TCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 666666666666666543 2345556666666666666666666666665532 112334444444445555555555
Q ss_pred HHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC----
Q 006388 296 QFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFGKANETIDLFEKMLSHG---- 371 (647)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---- 371 (647)
..+..+.+.. +. +...|..+...+...|++++|+..|+++.+..
T Consensus 365 ~~~~~~~~~~-~~-------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 365 AFFNETKLKF-PT-------------------------------LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHHHHHHC-TT-------------------------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHhC-CC-------------------------------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 5555444442 22 33444444555555555555555555544321
Q ss_pred -CCCCHHHHHHHHHHHhcC----------CcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006388 372 -LKPDEVTLIGVLSACSRA----------GLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM 438 (647)
Q Consensus 372 -~~p~~~t~~~ll~a~~~~----------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 438 (647)
.......+......+... |++++|...|+.+.+. .+.+...+..+...|.+.|++++|.+.|+++
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 011111222333334444 5566666666555542 1223455555666666666666666666554
No 15
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=1.2e-18 Score=173.87 Aligned_cols=327 Identities=13% Similarity=0.105 Sum_probs=148.0
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 006388 141 SWTTMITGLMQNGLEREAIDLFREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYC 220 (647)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 220 (647)
+|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...+....+. .+++.+.+.|+.+|.
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~ 105 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALA 105 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHH
Confidence 5555556666666666666655431 34555666666666666666666655555443 334556666667777
Q ss_pred hcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 006388 221 KCKSIKYAESVFRTMAWKNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGR 300 (647)
Q Consensus 221 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 300 (647)
++|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|..+..++.+.|++++|.+.+..
T Consensus 106 Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~K 173 (449)
T 1b89_A 106 KTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARK 173 (449)
T ss_dssp ---CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHH
Confidence 77777666666643 45557777777777777777777777655 2566666677777777777666665
Q ss_pred HHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 006388 301 SLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLI 380 (647)
Q Consensus 301 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 380 (647)
+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++++|+.+++...... +-....|+
T Consensus 174 A------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ft 245 (449)
T 1b89_A 174 A------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFT 245 (449)
T ss_dssp H------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHH
T ss_pred c------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHH
Confidence 5 255666777777777777777766555544 333334457777788888888888887776532 22233555
Q ss_pred HHHHHHh--cCCcHHHHHHHHHHHHHhcCCCc------ChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhhHHHHHH
Q 006388 381 GVLSACS--RAGLVEKGRHYFEIMVKEYGIRP------IHDHYTCMIDILSRAGRLEEAKSFINKMPFPPDAIGWATLLS 452 (647)
Q Consensus 381 ~ll~a~~--~~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~ 452 (647)
.+.-+++ +.+++.+.++.|. ++-+++| +...|.-++-.|...++++.|...+-+-+ |+..--..+..
T Consensus 246 el~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~--~~a~~~~~f~~ 320 (449)
T 1b89_A 246 ELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP--TDAWKEGQFKD 320 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST--TTTCCHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC--hhhhhhHHHHH
Confidence 5544444 3445555555554 2234555 45678889999999999999988766653 34444455566
Q ss_pred HHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHH
Q 006388 453 SCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRT 503 (647)
Q Consensus 453 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 503 (647)
...+-.+.+.--++..-.++..| ..++.|..++...=+...+.+++++
T Consensus 321 ~~~kv~n~elyYkai~fyl~~~p---~~l~~ll~~l~~~ld~~r~v~~~~~ 368 (449)
T 1b89_A 321 IITKVANVELYYRAIQFYLEFKP---LLLNDLLMVLSPRLDHTRAVNYFSK 368 (449)
T ss_dssp HHHHCSSTHHHHHHHHHHHHHCG---GGHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred HHhchhHHHHHHHHHHHHHhcCH---HHHHHHHHHHHhccCcHHHHHHHHH
Confidence 66667777666666665555555 4566666666555555555555544
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=2.1e-17 Score=165.09 Aligned_cols=287 Identities=10% Similarity=0.025 Sum_probs=209.1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006388 206 KDNVFVGSALVDMYCKCKSIKYAESVFRTMAW---KNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVI 282 (647)
Q Consensus 206 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 282 (647)
+.+..++..+...+...|++++|.++|+++.. .+...+..++..+...|++++|+.+++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 34445555666666666777777776666542 234455566666677777777777777776642 22345566666
Q ss_pred HHHhccC-ChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChH
Q 006388 283 SSCANLA-SLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMN---VRDEVSWTALVSGYAKFGKAN 358 (647)
Q Consensus 283 ~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~ 358 (647)
..+...| ++++|...+..+.+.. +.+...+..+...|...|++++|.+.|+++. ..+...|..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 6666677 6777777777766654 3345667777888888888888888887765 335667777888888888999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC-------CCcChHHHHHHHHHHHHcCCHHHH
Q 006388 359 ETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYG-------IRPIHDHYTCMIDILSRAGRLEEA 431 (647)
Q Consensus 359 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A 431 (647)
+|...|++..+.. +.+...+..+...+...|++++|...++.+.+... .+.....+..+...|.+.|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999988888752 33456778888888889999999998888876421 133467888999999999999999
Q ss_pred HHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhh-hhCCChh
Q 006388 432 KSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIY-ASKGKWD 495 (647)
Q Consensus 432 ~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 495 (647)
.+.++++ ...| +...|..+...+...|++++|...+++++++.|+++..+..++.++ ...|+.+
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999887 2333 5778899999999999999999999999999999999999999888 5666654
No 17
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.79 E-value=5.2e-15 Score=164.17 Aligned_cols=379 Identities=13% Similarity=0.075 Sum_probs=287.0
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHhccCCC-C-----CchHHHHHHHHHHhcCChHHHHHHhhcCCCCCeehHHHHHHHH
Q 006388 76 YVFVGSPLVDMYAKLGLIYDAKRGFDELPE-K-----NIVMYNTMITGLLRRGLVEESRRLFRGMKDKDSISWTTMITGL 149 (647)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 149 (647)
++.-....+..|...|.+.+|.++++++.- + +...-+.++.+..+. +..+..+..++...-+ ...+...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Ia 1059 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIA 1059 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHH
Confidence 334445667778888888888888887762 2 224455566666666 4455555555444222 44577788
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 006388 150 MQNGLEREAIDLFREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAE 229 (647)
Q Consensus 150 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 229 (647)
...|.+++|..+|++.. -.....+.++. ..+++++|.++.+.. .+..+|..+..++.+.|++++|.
T Consensus 1060 i~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 88999999999999852 12222333333 567888888887754 45778889999999999999999
Q ss_pred HHHhcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcc
Q 006388 230 SVFRTMAWKNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISF 309 (647)
Q Consensus 230 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~ 309 (647)
+.|.+. .|...|..++..+.+.|++++|++.|...++.. ++....+.+..+|++.++++....+. + .++
T Consensus 1126 dsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n 1194 (1630)
T 1xi4_A 1126 DSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPN 1194 (1630)
T ss_pred HHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCC
Confidence 999764 678888999999999999999999998877754 44333445888899998888644442 2 344
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC
Q 006388 310 ITVSNALVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRA 389 (647)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 389 (647)
...+..+.+.|...|++++|...|... ..|..+...|.+.|++++|++.+++. -+..+|..+-.+|...
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~ 1263 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDG 1263 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhh
Confidence 556667999999999999999999985 48999999999999999999999876 3568999999999999
Q ss_pred CcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhc--CChhHHHH
Q 006388 390 GLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPPD-AIGWATLLSSCRIH--GNVEIGKW 465 (647)
Q Consensus 390 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~--~~~~~a~~ 465 (647)
|++..|...... +..+++.+..++..|.+.|.+++|+.+++.. +.+|. ...|.-|...+.+. ++..++.+
T Consensus 1264 ~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A 1264 KEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred hHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999887543 3456778889999999999999999999877 55554 55676676666654 46667777
Q ss_pred HHHHHhccCC-----CCchhHHHHHHhhhhCCChhHHHHH
Q 006388 466 AAESLLELDP-----YNPASYVLLSSIYASKGKWDHVSQL 500 (647)
Q Consensus 466 ~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~~ 500 (647)
.|..-..+.| .+...|..+...|.+.|+|+.|...
T Consensus 1338 ~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1338 LFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 7776666555 5778899999999999999999853
No 18
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.79 E-value=4.5e-15 Score=164.62 Aligned_cols=381 Identities=11% Similarity=0.089 Sum_probs=276.2
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCCC-CCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHH
Q 006388 10 NLLISGHASHGSVNDAVKVYNLMLKDGL-GNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSPLVDMYA 88 (647)
Q Consensus 10 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 88 (647)
...+.+|...|.+.+|+++|++....+- +..+...-+.|+.+..+. +...+..+...+- .+...-+...+.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd-------~~d~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD-------NYDAPDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh-------hccHHHHHHHHH
Confidence 4567888889999999999998884321 012334455555555554 5555655555543 122344677788
Q ss_pred hcCChHHHHHHhccCCCCCchHHHHHHHHHHhcCChHHHHHHhhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 006388 89 KLGLIYDAKRGFDELPEKNIVMYNTMITGLLRRGLVEESRRLFRGMKDKDSISWTTMITGLMQNGLEREAIDLFREMRLE 168 (647)
Q Consensus 89 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 168 (647)
..|.+++|..+|++... .....+.++ -..+++++|.++.++.. +..+|..+..++.+.|++++|++.|.+.
T Consensus 1061 ~lglyEEAf~IYkKa~~-~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDV-NTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred hCCCHHHHHHHHHHcCC-HHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence 88999999999998752 122223332 27788999999988774 4678889999999999999999999663
Q ss_pred CCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHH
Q 006388 169 GLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMAWKNVVSWTAMLV 248 (647)
Q Consensus 169 g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 248 (647)
-|...|..++.+|.+.|+++++.+.+....+.. ++..+.+.++.+|++.+++++..... ..++...|..+..
T Consensus 1132 ---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd 1203 (1630)
T 1xi4_A 1132 ---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGD 1203 (1630)
T ss_pred ---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHH
Confidence 367778889999999999999999998887764 44444556889999999988654443 3556677888888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHH
Q 006388 249 GYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIED 328 (647)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 328 (647)
.|...|++++|..+|... ..|..+..++.+.|+++.|.+.++.. .+..+|..+..++...|++..
T Consensus 1204 ~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~L 1268 (1630)
T 1xi4_A 1204 RCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRL 1268 (1630)
T ss_pred HHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHH
Confidence 999999999999999874 37888888999999999999888776 455778888888888899998
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHH--HhcCCcHHHHHHHHHHHHHh
Q 006388 329 SHRLFNEMNVRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEV-TLIGVLSA--CSRAGLVEKGRHYFEIMVKE 405 (647)
Q Consensus 329 A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a--~~~~g~~~~a~~~~~~~~~~ 405 (647)
|...... ...++..+..++..|...|.+++|+.+++..+.. .|... .|+-+... -.+.++..++.++|..-.
T Consensus 1269 A~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L--eraH~gmftELaiLyaKy~peklmEhlk~f~~ri-- 1343 (1630)
T 1xi4_A 1269 AQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWSRV-- 1343 (1630)
T ss_pred HHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--
Confidence 8887765 3345566778888899999999999999877653 34332 45444444 444556666666665332
Q ss_pred cCCCc------ChHHHHHHHHHHHHcCCHHHHHHHHH
Q 006388 406 YGIRP------IHDHYTCMIDILSRAGRLEEAKSFIN 436 (647)
Q Consensus 406 ~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~ 436 (647)
+++| +...|.-++-+|.+.|+++.|...+-
T Consensus 1344 -ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~ 1379 (1630)
T 1xi4_A 1344 -NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 1379 (1630)
T ss_pred -ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 4444 45778889999999999998885443
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.78 E-value=1.4e-15 Score=161.03 Aligned_cols=350 Identities=11% Similarity=0.016 Sum_probs=255.0
Q ss_pred CChHHHHHHhhcCCC-CCeehHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhc----CCChHH
Q 006388 122 GLVEESRRLFRGMKD-KDSISWTTMITGLMQ----NGLEREAIDLFREMRLEGLAMDQFTFGSVLTACGG----LLALEE 192 (647)
Q Consensus 122 g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~----~~~~~~ 192 (647)
+++++|...|++..+ .+..++..|...|.. .+++++|++.|++..+.| +...+..+...+.. .+++++
T Consensus 57 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 133 (490)
T 2xm6_A 57 KDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAE 133 (490)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 334444444433222 244556666666666 677777777777776654 44455555555555 567777
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhcCCC-CChhHHHHHHHHHHh----cCChhHHHHHH
Q 006388 193 GKQIHAFIIRNDHKDNVFVGSALVDMYCK----CKSIKYAESVFRTMAW-KNVVSWTAMLVGYGQ----NGCSEEAVKIF 263 (647)
Q Consensus 193 a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~ 263 (647)
|.+.++...+.| +...+..|..+|.. .++.++|.+.|++..+ .+..++..+...|.. .++.++|++.|
T Consensus 134 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 210 (490)
T 2xm6_A 134 SVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWY 210 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHH
Confidence 777777777654 45566667777776 6778888888876543 366777777777777 78888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHh----cCCHHHHHHHHhh
Q 006388 264 CNMQRNGIEPDDFTLGSVISSCAN----LASLEEGTQFHGRSLVTGLISFITVSNALVTFYGK----CGNIEDSHRLFNE 335 (647)
Q Consensus 264 ~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~ 335 (647)
++..+.| +...+..+...+.. .++.++|..++....+.+ +...+..|..+|.. .++.++|.+.|++
T Consensus 211 ~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~ 284 (490)
T 2xm6_A 211 RKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRK 284 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Confidence 8887764 44555555555554 678888888888877764 34556667777877 8899999999988
Q ss_pred cCC-CChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC---cHHHHHHHHHHHHHhc
Q 006388 336 MNV-RDEVSWTALVSGYAKF-----GKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAG---LVEKGRHYFEIMVKEY 406 (647)
Q Consensus 336 ~~~-~d~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~ 406 (647)
... .+..++..+...|... +++++|+..|++..+.| +...+..+...+...| +.++|.++|+...+.
T Consensus 285 a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~- 360 (490)
T 2xm6_A 285 SAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK- 360 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-
T ss_pred HHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-
Confidence 764 4677888888888887 89999999999998865 4456666666666656 889999999998764
Q ss_pred CCCcChHHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHhccCCC--
Q 006388 407 GIRPIHDHYTCMIDILSR----AGRLEEAKSFINKMPFPPDAIGWATLLSSCRI----HGNVEIGKWAAESLLELDPY-- 476 (647)
Q Consensus 407 ~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~-- 476 (647)
.+...+..|..+|.. .+++++|.+.|++.-...++..+..|...|.. .++.++|...++++.+.+|+
T Consensus 361 ---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 437 (490)
T 2xm6_A 361 ---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLF 437 (490)
T ss_dssp ---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHH
T ss_pred ---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCc
Confidence 467788889999988 89999999999987323467788889988887 89999999999999999854
Q ss_pred -CchhHHHHHHhhhh
Q 006388 477 -NPASYVLLSSIYAS 490 (647)
Q Consensus 477 -~~~~~~~l~~~~~~ 490 (647)
++.....|+.++..
T Consensus 438 ~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 438 GTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHTTSCHH
T ss_pred CCHHHHHHHHhcCHh
Confidence 77777778777664
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.77 E-value=1e-16 Score=160.12 Aligned_cols=264 Identities=12% Similarity=0.015 Sum_probs=228.2
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHH
Q 006388 238 KNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALV 317 (647)
Q Consensus 238 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 317 (647)
.++..+..+...+...|++++|+++|+++.+.. +.+...+..+..++...|++++|...+..+.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 466678888899999999999999999998763 3344566677788899999999999999999875 45677888999
Q ss_pred HHHHhcC-CHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHH
Q 006388 318 TFYGKCG-NIEDSHRLFNEMN---VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVE 393 (647)
Q Consensus 318 ~~~~~~g-~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 393 (647)
..|...| ++++|.+.|++.. ..+...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 9999999999876 3367789999999999999999999999998853 234567777888999999999
Q ss_pred HHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC----C-------CCCChhhHHHHHHHHHhcCChhH
Q 006388 394 KGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM----P-------FPPDAIGWATLLSSCRIHGNVEI 462 (647)
Q Consensus 394 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~-------~~p~~~~~~~ll~~~~~~~~~~~ 462 (647)
+|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ + .+....+|..+...+...|++++
T Consensus 177 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999753 3445788999999999999999999999876 1 02346789999999999999999
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 463 GKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 463 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
|...++++++..|+++..+..++.+|...|++++|.+.+++..+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999997655
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=9.4e-16 Score=164.13 Aligned_cols=208 Identities=9% Similarity=0.042 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHhCCCcchhHHHHHHHHHHh-------cCCHH-------HHHHHHhhcCC---C-ChhhHHHHHHHHHHc
Q 006388 293 EGTQFHGRSLVTGLISFITVSNALVTFYGK-------CGNIE-------DSHRLFNEMNV---R-DEVSWTALVSGYAKF 354 (647)
Q Consensus 293 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~---~-d~~~~~~li~~~~~~ 354 (647)
.+..++++++... +.+..+|..++..+.+ .|+++ +|..+|++... | +...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 3444555555442 3345555555555554 46654 66666666542 2 455666777777777
Q ss_pred CChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCc-ChHHHHHHHHH-HHHcCCHHH
Q 006388 355 GKANETIDLFEKMLSHGLKPDE--VTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRP-IHDHYTCMIDI-LSRAGRLEE 430 (647)
Q Consensus 355 g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~-~~~~g~~~~ 430 (647)
|++++|..+|+++.+. .|+. ..|...+..+.+.|++++|+.+|+...+. .| +...|...+.+ +...|+.++
T Consensus 335 g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp TCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred CCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhH
Confidence 7777777777777663 4442 35666666666667777777777766542 22 22333222222 235677777
Q ss_pred HHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCch----hHHHHHHhhhhCCChhHHHHHHHHH
Q 006388 431 AKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPA----SYVLLSSIYASKGKWDHVSQLRRTM 504 (647)
Q Consensus 431 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m 504 (647)
|..+|++. ...| +...|..++..+...|+.+.|..+++++++..|.++. .+...+......|+.+.+..+.+++
T Consensus 410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777665 2223 3667777777777777777777777777776655443 5555566666677777777777766
Q ss_pred Hh
Q 006388 505 RE 506 (647)
Q Consensus 505 ~~ 506 (647)
.+
T Consensus 490 ~~ 491 (530)
T 2ooe_A 490 FT 491 (530)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=6.4e-17 Score=164.50 Aligned_cols=279 Identities=12% Similarity=-0.040 Sum_probs=211.9
Q ss_pred hcCCHHHHHH-HHhcCCC---C----ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 006388 221 KCKSIKYAES-VFRTMAW---K----NVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLE 292 (647)
Q Consensus 221 ~~g~~~~A~~-~~~~~~~---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 292 (647)
-.|++++|.. .|++... . +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3466777776 6665432 1 24557777778888888888888888887753 335566777777778888888
Q ss_pred HHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHH---------------HHHHHHHc
Q 006388 293 EGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVR---DEVSWTA---------------LVSGYAKF 354 (647)
Q Consensus 293 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---d~~~~~~---------------li~~~~~~ 354 (647)
+|...+..+.+.. +.+..++..+...|...|++++|.+.|+++... +...+.. .+..+...
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 8888888877765 446677778888888888888888888776521 2222221 13334488
Q ss_pred CChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHH
Q 006388 355 GKANETIDLFEKMLSHGLK-PDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKS 433 (647)
Q Consensus 355 g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 433 (647)
|++++|+..|+++.+.... ++..++..+...+...|++++|...|+.+.+. .+.+...+..+...|.+.|++++|.+
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999885322 14678899999999999999999999999864 23457889999999999999999999
Q ss_pred HHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-----------chhHHHHHHhhhhCCChhHHHHH
Q 006388 434 FINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYN-----------PASYVLLSSIYASKGKWDHVSQL 500 (647)
Q Consensus 434 ~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~~~ 500 (647)
.++++ ...| +..+|..+...+...|++++|...+++++++.|++ +.++..++.+|...|++++|..+
T Consensus 273 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 99987 3344 57889999999999999999999999999998877 78999999999999999999998
Q ss_pred HHH
Q 006388 501 RRT 503 (647)
Q Consensus 501 ~~~ 503 (647)
+++
T Consensus 353 ~~~ 355 (368)
T 1fch_A 353 DAR 355 (368)
T ss_dssp HTT
T ss_pred HHH
Confidence 764
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=2.3e-15 Score=161.17 Aligned_cols=406 Identities=11% Similarity=0.052 Sum_probs=215.8
Q ss_pred HHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCC--C-CchHHHHHHHHHHhcCChHHHHHHhhcCCC--CCe
Q 006388 65 HGHILKFGFGSYVFVGSPLVDMYAKLGLIYDAKRGFDELPE--K-NIVMYNTMITGLLRRGLVEESRRLFRGMKD--KDS 139 (647)
Q Consensus 65 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~ 139 (647)
++..++.. +.+...+..++. +.+.|++++|+.+|+++.+ | +...|..++..+.+.|++++|..+|++... |++
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~ 79 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHI 79 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCH
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Confidence 34444444 457778888887 4778889999988888765 3 445677888888888888888888887665 455
Q ss_pred ehHHHHHHHH-HhCCChhHHHH----HHHHHHH-CCCCCC-hhhHHHHHHHHhc---------CCChHHHHHHHHHHHHc
Q 006388 140 ISWTTMITGL-MQNGLEREAID----LFREMRL-EGLAMD-QFTFGSVLTACGG---------LLALEEGKQIHAFIIRN 203 (647)
Q Consensus 140 ~~~~~li~~~-~~~g~~~~A~~----~~~~m~~-~g~~pd-~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~ 203 (647)
..|...+... ...|+.++|.+ +|++... .|..|+ ...|...+..... .|+++.|..+++..++.
T Consensus 80 ~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~ 159 (530)
T 2ooe_A 80 DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN 159 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc
Confidence 5666665432 34566666654 5555543 344443 3344444443332 45667777777776662
Q ss_pred CCCCchhHHHHHHHHH-------------HhcCCHHHHHHHHhc-------CC------CCC--------hhHHHHHHHH
Q 006388 204 DHKDNVFVGSALVDMY-------------CKCKSIKYAESVFRT-------MA------WKN--------VVSWTAMLVG 249 (647)
Q Consensus 204 g~~~~~~~~~~li~~y-------------~~~g~~~~A~~~~~~-------~~------~~~--------~~~~~~li~~ 249 (647)
.......+|....... .+.++++.|..++.. +. .++ ...|...+..
T Consensus 160 P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~ 239 (530)
T 2ooe_A 160 PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQW 239 (530)
T ss_dssp CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHH
Confidence 1111122333222211 012344455544433 10 111 1344444433
Q ss_pred HHhcC----Ch----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-------cCChH-------HHHHHHHHHHHhCCC
Q 006388 250 YGQNG----CS----EEAVKIFCNMQRNGIEPDDFTLGSVISSCAN-------LASLE-------EGTQFHGRSLVTGLI 307 (647)
Q Consensus 250 ~~~~g----~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-------~~~~~-------~a~~~~~~~~~~~~~ 307 (647)
...++ +. ++++.+|++..... +-+...|......+.. .|+++ +|..+++..++.-.+
T Consensus 240 e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p 318 (530)
T 2ooe_A 240 EKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK 318 (530)
T ss_dssp HHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCS
T ss_pred HHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCc
Confidence 22211 11 24555666655531 2233444444444433 45554 566666666542223
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHhhcC--CC-Ch-hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006388 308 SFITVSNALVTFYGKCGNIEDSHRLFNEMN--VR-DE-VSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVL 383 (647)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-d~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 383 (647)
.+..++..++..+.+.|++++|.++|+++. .| +. ..|...+..+.+.|+.++|..+|++..+.. +.+...+....
T Consensus 319 ~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a 397 (530)
T 2ooe_A 319 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAA 397 (530)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHH
Confidence 445566666666666666666666666554 22 22 356666666666666666666666665531 11122222211
Q ss_pred H-HHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC--hhhHHHHHHHHHh
Q 006388 384 S-ACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM----PFPPD--AIGWATLLSSCRI 456 (647)
Q Consensus 384 ~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~--~~~~~~ll~~~~~ 456 (647)
. .+...|+.++|..+|+...+.. +.+...|..+++.+.+.|+.++|..+|++. +..|+ ...|...+.....
T Consensus 398 ~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~ 475 (530)
T 2ooe_A 398 LMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN 475 (530)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 1 1223566666666666665432 223455666666666666666666666655 12221 3356666666666
Q ss_pred cCChhHHHHHHHHHhccCCC
Q 006388 457 HGNVEIGKWAAESLLELDPY 476 (647)
Q Consensus 457 ~~~~~~a~~~~~~~~~~~p~ 476 (647)
+|+.+.+..+.+++.+..|+
T Consensus 476 ~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 476 IGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp SSCHHHHHHHHHHHHHHTHH
T ss_pred cCCHHHHHHHHHHHHHHCch
Confidence 66666666666666666653
No 24
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.75 E-value=1.2e-14 Score=153.82 Aligned_cols=352 Identities=12% Similarity=0.010 Sum_probs=295.8
Q ss_pred CCeehHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhc----CCChHHHHHHHHHHHHcCCCCc
Q 006388 137 KDSISWTTMITGLMQ----NGLEREAIDLFREMRLEGLAMDQFTFGSVLTACGG----LLALEEGKQIHAFIIRNDHKDN 208 (647)
Q Consensus 137 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~ 208 (647)
.++.++..|...|.. .+++++|+..|++..+.| +...+..+-..+.. .++.++|.+.+....+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 366777778888887 899999999999998865 56677777777777 899999999999999875 5
Q ss_pred hhHHHHHHHHHHh----cCCHHHHHHHHhcCCCC-ChhHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHH
Q 006388 209 VFVGSALVDMYCK----CKSIKYAESVFRTMAWK-NVVSWTAMLVGYGQ----NGCSEEAVKIFCNMQRNGIEPDDFTLG 279 (647)
Q Consensus 209 ~~~~~~li~~y~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~ 279 (647)
...+..|..+|.. .+++++|...|++..+. ++.++..|...|.. .++.++|++.|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 6677788999998 88999999999987644 67788889999988 789999999999998875 566777
Q ss_pred HHHHHHhc----cCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHh----cCCHHHHHHHHhhcC-CCChhhHHHHHHH
Q 006388 280 SVISSCAN----LASLEEGTQFHGRSLVTGLISFITVSNALVTFYGK----CGNIEDSHRLFNEMN-VRDEVSWTALVSG 350 (647)
Q Consensus 280 ~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~d~~~~~~li~~ 350 (647)
.+...+.. .++.++|...+....+.+ +......+..+|.. .+++++|.+.|++.. ..+..++..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777776 899999999999998875 45677788888886 899999999999876 4467788888888
Q ss_pred HHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC-----CcHHHHHHHHHHHHHhcCCCcChHHHHHHHHH
Q 006388 351 YAK----FGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRA-----GLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDI 421 (647)
Q Consensus 351 ~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 421 (647)
|.. .++.++|+..|++..+.| +...+..+...+... +++++|..+|+...+. + +...+..|..+
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHH
Confidence 888 899999999999998765 445666677777766 8999999999998764 3 45677888888
Q ss_pred HHHcC---CHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCchhHHHHHHhhhh----
Q 006388 422 LSRAG---RLEEAKSFINKMPFPPDAIGWATLLSSCRI----HGNVEIGKWAAESLLELDPYNPASYVLLSSIYAS---- 490 (647)
Q Consensus 422 ~~~~g---~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---- 490 (647)
|.+.| ++++|.++|++.-...++..+..|...|.. .+++++|...++++.+.+ ++..+..|+.+|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence 88877 889999999988323578889999999988 899999999999998865 57899999999998
Q ss_pred CCChhHHHHHHHHHHhCCC
Q 006388 491 KGKWDHVSQLRRTMREKGV 509 (647)
Q Consensus 491 ~g~~~~a~~~~~~m~~~g~ 509 (647)
.+++++|...+++..+.|.
T Consensus 416 ~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHCCC
Confidence 8999999999999988764
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=5.9e-17 Score=164.72 Aligned_cols=261 Identities=10% Similarity=-0.044 Sum_probs=203.2
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 006388 239 NVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVT 318 (647)
Q Consensus 239 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 318 (647)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...+..+.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44557778888888888888888888887653 3356677777788888888888888888887764 445677888888
Q ss_pred HHHhcCCHHHHHHHHhhcCCC---C----------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 006388 319 FYGKCGNIEDSHRLFNEMNVR---D----------EVSWTALVSGYAKFGKANETIDLFEKMLSHGLK-PDEVTLIGVLS 384 (647)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~---d----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~ 384 (647)
.|...|++++|.+.|+++... + ...+..+...+...|++++|+..|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 888888888888888876522 1 223344578888999999999999999885322 15778889999
Q ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhH
Q 006388 385 ACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEI 462 (647)
Q Consensus 385 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~ 462 (647)
.+...|++++|...|+.+.+. .+.+...|..+..+|.+.|++++|.+.++++ ...| +..+|..+...+...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999864 2446789999999999999999999999987 3445 48889999999999999999
Q ss_pred HHHHHHHHhccCCC------------CchhHHHHHHhhhhCCChhHHHHHHHH
Q 006388 463 GKWAAESLLELDPY------------NPASYVLLSSIYASKGKWDHVSQLRRT 503 (647)
Q Consensus 463 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 503 (647)
|...+++++++.|+ +...+..|+.++...|+.+.+.++.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999998776 367899999999999999988887664
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.73 E-value=2.6e-16 Score=157.18 Aligned_cols=281 Identities=9% Similarity=0.021 Sum_probs=83.5
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHH
Q 006388 18 SHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSPLVDMYAKLGLIYDAK 97 (647)
Q Consensus 18 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 97 (647)
+.|+.++|.++++++. .| .+|..|..++.+.|++++|...|.+ .+|...+..++..+...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~~-----~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-----EP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-----Ch--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHH
Confidence 3455556666665552 22 2555666666666666666555533 134445555555555566666666
Q ss_pred HHhccCCC--CCchHHHHHHHHHHhcCChHHHHHHhhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh
Q 006388 98 RGFDELPE--KNIVMYNTMITGLLRRGLVEESRRLFRGMKDKDSISWTTMITGLMQNGLEREAIDLFREMRLEGLAMDQF 175 (647)
Q Consensus 98 ~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 175 (647)
+.++...+ +++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|++++|..+|..+ .
T Consensus 82 ~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~ 149 (449)
T 1b89_A 82 KYLQMARKKARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------S 149 (449)
T ss_dssp ---------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------T
T ss_pred HHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------h
Confidence 65544432 3334555555555555555555555542 44455666666666666666666666544 2
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC
Q 006388 176 TFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMAWKNVVSWTAMLVGYGQNGC 255 (647)
Q Consensus 176 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 255 (647)
.|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|+
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~ 222 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGY 222 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCC
Confidence 4555555555555555555555544 245555555555555555555555444433 333333345555666666
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cCChHHHHHHHHHHHHhCCCc------chhHHHHHHHHHHhcCCHH
Q 006388 256 SEEAVKIFCNMQRNGIEPDDFTLGSVISSCAN--LASLEEGTQFHGRSLVTGLIS------FITVSNALVTFYGKCGNIE 327 (647)
Q Consensus 256 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~ 327 (647)
+++|+.+++...... +-....|+.+--++++ .+++.+..+.|. .+.++++ +..+|..++-.|.+-++++
T Consensus 223 ~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~--~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d 299 (449)
T 1b89_A 223 FEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW--SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 299 (449)
T ss_dssp HHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS--TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence 666666665554322 1122223333222222 222222222222 1111121 2445566666666666666
Q ss_pred HHHHHH
Q 006388 328 DSHRLF 333 (647)
Q Consensus 328 ~A~~~~ 333 (647)
.|..+.
T Consensus 300 ~A~~tm 305 (449)
T 1b89_A 300 NAIITM 305 (449)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 27
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.73 E-value=4.4e-16 Score=158.25 Aligned_cols=270 Identities=13% Similarity=-0.005 Sum_probs=144.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhc
Q 006388 177 FGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMA---WKNVVSWTAMLVGYGQN 253 (647)
Q Consensus 177 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 253 (647)
+..+...+...|++++|...+..+++.. +.+..++..+...|.+.|++++|...|+++. ..+..+|..+...|...
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 145 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNE 145 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 3344444444444444444444444432 2344455556666666666666666666543 23556777777777777
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHH
Q 006388 254 GCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLF 333 (647)
Q Consensus 254 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 333 (647)
|++++|+..|+++.... |+........ +..... ..+ ......+...+ ..|++++|...|
T Consensus 146 g~~~~A~~~~~~~~~~~--~~~~~~~~~~------~~~~~~-----------~~~-~~~~~~~~~~~-~~~~~~~A~~~~ 204 (368)
T 1fch_A 146 SLQRQACEILRDWLRYT--PAYAHLVTPA------EEGAGG-----------AGL-GPSKRILGSLL-SDSLFLEVKELF 204 (368)
T ss_dssp TCHHHHHHHHHHHHHTS--TTTGGGCC---------------------------------CTTHHHH-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--cCcHHHHHHH------HHHhhh-----------hcc-cHHHHHHHHHh-hcccHHHHHHHH
Confidence 77777777777777653 3222111000 000000 000 00001112222 455555555555
Q ss_pred hhcC--CC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC
Q 006388 334 NEMN--VR---DEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGI 408 (647)
Q Consensus 334 ~~~~--~~---d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 408 (647)
+++. .| +..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+.+.+. .
T Consensus 205 ~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~ 281 (368)
T 1fch_A 205 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--Q 281 (368)
T ss_dssp HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 5543 11 34556666666666666666666666665531 223446666666666666666666666666543 1
Q ss_pred CcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC------------ChhhHHHHHHHHHhcCChhHHHHHHHHHh
Q 006388 409 RPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP------------DAIGWATLLSSCRIHGNVEIGKWAAESLL 471 (647)
Q Consensus 409 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 471 (647)
+.+...+..+..+|.+.|++++|.+.++++ ...| ...+|..+..++...|+.++|..++++.+
T Consensus 282 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 282 PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 234556666666677777777777666655 1111 15667777777777777777777666443
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=2.8e-15 Score=146.54 Aligned_cols=268 Identities=10% Similarity=0.001 Sum_probs=205.6
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCh----hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH
Q 006388 218 MYCKCKSIKYAESVFRTMAWKNV----VSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEE 293 (647)
Q Consensus 218 ~y~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 293 (647)
-....|+++.|+..++.....++ ...-.+..+|...|++++|+..++. .-+|+..++..+...+...++.+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 34456778888887777655442 2345567788888888888876644 134566677777777788888888
Q ss_pred HHHHHHHHHHhCC-CcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 006388 294 GTQFHGRSLVTGL-ISFITVSNALVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGL 372 (647)
Q Consensus 294 a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 372 (647)
|.+.++.+...+. +.+...+..+...|...|++++|.+.|++ ..+...+..++..|.+.|++++|...|+++.+.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 159 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-- 159 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence 8888888877664 34566677788899999999999999998 567889999999999999999999999999985
Q ss_pred CCCHHHH---HHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhH
Q 006388 373 KPDEVTL---IGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGW 447 (647)
Q Consensus 373 ~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 447 (647)
.|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.++++ ...| ++.+|
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 4665321 12334445669999999999999875 4567889999999999999999999999987 4445 57889
Q ss_pred HHHHHHHHhcCChhH-HHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHH
Q 006388 448 ATLLSSCRIHGNVEI-GKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQ 499 (647)
Q Consensus 448 ~~ll~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 499 (647)
..++..+...|+.++ +...++++++++|+++.+.. ...+.+.++++..
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHH
Confidence 999999999998865 67899999999999876543 4455555555543
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=4.3e-15 Score=156.59 Aligned_cols=327 Identities=12% Similarity=0.042 Sum_probs=174.5
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHcC------C-CCchhHHHHHHHHHHhc--CCHHHHHHHHhcCCC---CChhHH
Q 006388 176 TFGSVLTACGGLLALEEGKQIHAFIIRND------H-KDNVFVGSALVDMYCKC--KSIKYAESVFRTMAW---KNVVSW 243 (647)
Q Consensus 176 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g------~-~~~~~~~~~li~~y~~~--g~~~~A~~~~~~~~~---~~~~~~ 243 (647)
+|..+..++...|++++|...++.+++.. . .....++..+..++.+. +++++|...|++..+ .++..+
T Consensus 96 ~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~ 175 (472)
T 4g1t_A 96 TWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFT 175 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHH
Confidence 44444444555555555554444443310 0 01122333333333333 345666666665432 233444
Q ss_pred HHHHHH---HHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHh----ccCChHHHHHHHHHHHHhCCCcchhHHHH
Q 006388 244 TAMLVG---YGQNGCSEEAVKIFCNMQRNGIEPD-DFTLGSVISSCA----NLASLEEGTQFHGRSLVTGLISFITVSNA 315 (647)
Q Consensus 244 ~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 315 (647)
..+... +...++.++|++.|++..+. .|+ ...+..+...+. ..++.++|.+.+....+.. +.+..++..
T Consensus 176 ~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~ 252 (472)
T 4g1t_A 176 SGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRS 252 (472)
T ss_dssp HHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHH
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHH
Confidence 443333 23345566666666666553 232 333333333332 2345566666666666554 344555666
Q ss_pred HHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHH-------------------cCChHHHHHHHHHHHHCCCC
Q 006388 316 LVTFYGKCGNIEDSHRLFNEMN---VRDEVSWTALVSGYAK-------------------FGKANETIDLFEKMLSHGLK 373 (647)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~-------------------~g~~~~A~~~~~~m~~~g~~ 373 (647)
+...|.+.|++++|...|++.. ..+..+|..+...|.. .+..++|...|++..+. .
T Consensus 253 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~ 330 (472)
T 4g1t_A 253 AAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--N 330 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--C
Confidence 6667777777777777766654 2244455555444422 23356788888887764 3
Q ss_pred CC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcCh--HHHHHHHH-HHHHcCCHHHHHHHHHhC-CCCCChhhHH
Q 006388 374 PD-EVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIH--DHYTCMID-ILSRAGRLEEAKSFINKM-PFPPDAIGWA 448 (647)
Q Consensus 374 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~ 448 (647)
|+ ..++..+...+...|++++|...|+...+. ...|.. ..+..+.. .+...|+.++|++.+++. .+.|+...+.
T Consensus 331 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~ 409 (472)
T 4g1t_A 331 DNLFRVCSILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE 409 (472)
T ss_dssp TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH
T ss_pred CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH
Confidence 33 346777888899999999999999988753 222221 12333333 234678999999999877 5667654443
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhCCCccCCCcce
Q 006388 449 TLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREKGVRKDPGCSW 517 (647)
Q Consensus 449 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~ 517 (647)
.. ...+..++++.++.+|+++.+|..|+.+|...|++++|.+.+++..+.|-......+|
T Consensus 410 ~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 410 KM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred HH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 32 3445677888889999999999999999999999999999999998766443233344
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.70 E-value=9.8e-16 Score=152.73 Aligned_cols=255 Identities=10% Similarity=-0.053 Sum_probs=171.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcC
Q 006388 245 AMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCG 324 (647)
Q Consensus 245 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 324 (647)
.+...+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|...+..+.+.. +.+..++..+...|...|
T Consensus 26 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 26 EEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcC
Confidence 33334444444444444444443321 1122333333444444444444444444444432 223344444555555555
Q ss_pred CHHHHHHHHhhcCC---CChhhHHHH--------------HH-HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006388 325 NIEDSHRLFNEMNV---RDEVSWTAL--------------VS-GYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSAC 386 (647)
Q Consensus 325 ~~~~A~~~~~~~~~---~d~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 386 (647)
++++|.+.|+++.. .+...+..+ .. .+...|++++|...++++.+.. +.+...+..+...+
T Consensus 104 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 182 (327)
T 3cv0_A 104 NANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLY 182 (327)
T ss_dssp CHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 55555555554431 122222222 22 3667788999999999998753 33567888888999
Q ss_pred hcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHH
Q 006388 387 SRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGK 464 (647)
Q Consensus 387 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~ 464 (647)
...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|.
T Consensus 183 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 260 (327)
T 3cv0_A 183 NLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAA 260 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHH
Confidence 9999999999999998864 2345788999999999999999999999887 3334 5788999999999999999999
Q ss_pred HHHHHHhccCCC------------CchhHHHHHHhhhhCCChhHHHHHHHHH
Q 006388 465 WAAESLLELDPY------------NPASYVLLSSIYASKGKWDHVSQLRRTM 504 (647)
Q Consensus 465 ~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 504 (647)
..++++++..|. ++..+..++.+|...|++++|..++++.
T Consensus 261 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 261 KQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999998 6889999999999999999999998754
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.69 E-value=1.6e-15 Score=154.11 Aligned_cols=231 Identities=13% Similarity=0.006 Sum_probs=196.5
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHH
Q 006388 274 DDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMN---VRDEVSWTALVSG 350 (647)
Q Consensus 274 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~ 350 (647)
+...+..+...+...|++++|...+..+++.. +.+..++..+...|.+.|++++|.+.|+++. ..+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34558888889999999999999999999875 5578889999999999999999999999876 3468899999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHH
Q 006388 351 YAKFGKANETIDLFEKMLSHGLKPDEV-----------TLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMI 419 (647)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-----------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 419 (647)
|...|++++|+..|+++.+. .|+.. .+..+...+...|++++|..+|+.+.+...-.++...+..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999874 34432 233457788999999999999999987643333688999999
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHH
Q 006388 420 DILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHV 497 (647)
Q Consensus 420 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 497 (647)
..|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|+..++++++..|+++.++..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999987 3334 5889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 006388 498 SQLRRTMREK 507 (647)
Q Consensus 498 ~~~~~~m~~~ 507 (647)
.+.++++.+.
T Consensus 301 ~~~~~~al~~ 310 (365)
T 4eqf_A 301 VSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998763
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.69 E-value=3.1e-15 Score=146.26 Aligned_cols=246 Identities=8% Similarity=0.018 Sum_probs=201.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcC
Q 006388 247 LVGYGQNGCSEEAVKIFCNMQRNGIEPDD--FTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCG 324 (647)
Q Consensus 247 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 324 (647)
|.-....|++..|+..+++... ..|+. .....+..++...|+++.|...++. .-+|+...+..+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 3455678999999998877543 34554 3446677899999999999875533 24667888899999999999
Q ss_pred CHHHHHHHHhhcC----CC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHH
Q 006388 325 NIEDSHRLFNEMN----VR-DEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYF 399 (647)
Q Consensus 325 ~~~~A~~~~~~~~----~~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 399 (647)
+.++|.+.++++. .| +...+..+...+.+.|++++|++.+++ ..+...+..+...+.+.|++++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999864 24 566778888999999999999999987 456778888999999999999999999
Q ss_pred HHHHHhcCCCcChHH---HHHHHHHHHHcCCHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 006388 400 EIMVKEYGIRPIHDH---YTCMIDILSRAGRLEEAKSFINKM--PFPPDAIGWATLLSSCRIHGNVEIGKWAAESLLELD 474 (647)
Q Consensus 400 ~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 474 (647)
+.+.+. .|+... ...++..+...|++++|..+|+++ ..+++...|+.+..++...|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999875 355321 223445555669999999999998 234568899999999999999999999999999999
Q ss_pred CCCchhHHHHHHhhhhCCChhH-HHHHHHHHHhC
Q 006388 475 PYNPASYVLLSSIYASKGKWDH-VSQLRRTMREK 507 (647)
Q Consensus 475 p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~ 507 (647)
|+++.++..++.++...|++++ +.++++++.+.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999976 56888888763
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=2.6e-14 Score=150.57 Aligned_cols=378 Identities=12% Similarity=-0.015 Sum_probs=218.6
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHhccCC-----------CC-CchHHHHHHHHHHhcCChHHHHHHhhcCCC------
Q 006388 75 SYVFVGSPLVDMYAKLGLIYDAKRGFDELP-----------EK-NIVMYNTMITGLLRRGLVEESRRLFRGMKD------ 136 (647)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----------~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------ 136 (647)
.....||.|...|...|++++|.+.|++.. ++ ...+|+.+...|...|++++|...|++..+
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 345678999999999999999998887642 12 345788888888888888888887765432
Q ss_pred -C----CeehHHHHHHHHHh--CCChhHHHHHHHHHHHCCCCCChh-hHHHHHHH---HhcCCChHHHHHHHHHHHHcCC
Q 006388 137 -K----DSISWTTMITGLMQ--NGLEREAIDLFREMRLEGLAMDQF-TFGSVLTA---CGGLLALEEGKQIHAFIIRNDH 205 (647)
Q Consensus 137 -~----~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~~---~~~~~~~~~a~~~~~~~~~~g~ 205 (647)
+ ...+++.+..++.. .+++++|++.|++..+. .|+.. .+..+..+ +...++.++|.+.++..++..
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 1 22345555444444 35688888888888764 35433 23333222 345667777888888777764
Q ss_pred CCchhHHHHHHHHHHh----cCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HH
Q 006388 206 KDNVFVGSALVDMYCK----CKSIKYAESVFRTMA---WKNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDD-FT 277 (647)
Q Consensus 206 ~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t 277 (647)
+.+..++..+...+.. .|+.++|.+.+++.. ..+..+|..+...|...|++++|+..|++..+. .|+. .+
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~ 283 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYL 283 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHH
Confidence 3344555555444443 456777888777653 345667888888888888888888888887764 3443 34
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHc
Q 006388 278 LGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMN---VRDEVSWTALVSGYAKF 354 (647)
Q Consensus 278 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~ 354 (647)
+..+..++...+.. . .... ...........+..+.|...|+... ..+..+|..+...|...
T Consensus 284 ~~~lg~~y~~~~~~-----~----~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQ-----V----MNLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHH-----H----HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH-----h----hhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHh
Confidence 44443333211000 0 0000 0001111112233567777777654 44677899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHH
Q 006388 355 GKANETIDLFEKMLSHGLKPDEV--TLIGVLS-ACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEA 431 (647)
Q Consensus 355 g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 431 (647)
|++++|+..|++..+....|... .+..+.. ...+.|+.++|+..|+...+ +.|+........ ..+
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l 415 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKL 415 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHH
Confidence 99999999999998864333322 2222222 34578999999999998874 455543322222 233
Q ss_pred HHHHHhC-CCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHH
Q 006388 432 KSFINKM-PFP-PDAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLS 485 (647)
Q Consensus 432 ~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 485 (647)
.+++++. ... .++.+|..|...+...|++++|+..++++++++|.+|.+..-++
T Consensus 416 ~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 416 QKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 3444433 223 35789999999999999999999999999999998887765543
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.65 E-value=1.6e-16 Score=171.03 Aligned_cols=133 Identities=17% Similarity=0.161 Sum_probs=116.6
Q ss_pred CCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC-------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 006388 305 GLISFITVSNALVTFYGKCGNIEDSHRLFNEMN-------VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEV 377 (647)
Q Consensus 305 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 377 (647)
....-..+||+||++|+++|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||.+
T Consensus 122 ~~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvv 201 (1134)
T 3spa_A 122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL 201 (1134)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH
Confidence 344556789999999999999999999997753 6799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCc-HHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006388 378 TLIGVLSACSRAGL-VEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM 438 (647)
Q Consensus 378 t~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 438 (647)
||+++|.++++.|. .++|.++|++|.+. |+.||..+|++++....+.+-++...++...+
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 99999999999987 57899999999887 99999999999998888776666555554444
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.65 E-value=4.8e-14 Score=140.39 Aligned_cols=263 Identities=10% Similarity=-0.021 Sum_probs=135.8
Q ss_pred CeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 006388 138 DSISWTTMITGLMQNGLEREAIDLFREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVD 217 (647)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 217 (647)
+...|..+...+.+.|++++|+.+|+++.+... .+..++..+...+...|++++|.+.++.+++.. +
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~----------- 86 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-P----------- 86 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-----------
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-c-----------
Confidence 445566677777777777777777777766421 133344444445555555555555555544432 1
Q ss_pred HHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHH-------------HH
Q 006388 218 MYCKCKSIKYAESVFRTMAWKNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDF-TLGSV-------------IS 283 (647)
Q Consensus 218 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~l-------------l~ 283 (647)
.+..+|..+...|...|++++|++.|+++.... |+.. .+..+ ..
T Consensus 87 --------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (327)
T 3cv0_A 87 --------------------KDIAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSE 144 (327)
T ss_dssp --------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC-------------------
T ss_pred --------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHH
Confidence 234455555556666666666666666665542 2221 11111 02
Q ss_pred --HHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChH
Q 006388 284 --SCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMN---VRDEVSWTALVSGYAKFGKAN 358 (647)
Q Consensus 284 --a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~ 358 (647)
.+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|.+.|+++. ..+..+|..+...+...|+++
T Consensus 145 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 223 (327)
T 3cv0_A 145 DFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQ 223 (327)
T ss_dssp -CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Confidence 2455566666666666665553 2344555555556666666666665555543 223445555555555556666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC----------cChHHHHHHHHHHHHcCCH
Q 006388 359 ETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIR----------PIHDHYTCMIDILSRAGRL 428 (647)
Q Consensus 359 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~----------p~~~~~~~li~~~~~~g~~ 428 (647)
+|+..|+++.+.. +.+..++..+...+...|++++|.+.|+.+.+...-. .+...+..+..+|.+.|++
T Consensus 224 ~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (327)
T 3cv0_A 224 EALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP 302 (327)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCH
Confidence 6666555555431 1223445555555555555555555555554321100 0234444555555555555
Q ss_pred HHHHHHHHh
Q 006388 429 EEAKSFINK 437 (647)
Q Consensus 429 ~~A~~~~~~ 437 (647)
++|..++++
T Consensus 303 ~~A~~~~~~ 311 (327)
T 3cv0_A 303 DLVELTYAQ 311 (327)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHHH
Confidence 555555443
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.64 E-value=1.9e-16 Score=170.37 Aligned_cols=150 Identities=13% Similarity=0.137 Sum_probs=124.5
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-------CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006388 206 KDNVFVGSALVDMYCKCKSIKYAESVFRTMA-------WKNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTL 278 (647)
Q Consensus 206 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 278 (647)
..-..+||+||++|+++|++++|.++|++|. .+|++|||+||.+|++.|+.++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 4445689999999999999999999997753 579999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCh-HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-----ChhhHHHHHHHHH
Q 006388 279 GSVISSCANLASL-EEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVR-----DEVSWTALVSGYA 352 (647)
Q Consensus 279 ~~ll~a~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----d~~~~~~li~~~~ 352 (647)
+++|.++++.|.. +.|.+++++|.+.|+.||..+|++++..+.+.+-++.+.+++..+..+ .+.+-..|...|.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s 283 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHc
Confidence 9999999999985 789999999999999999999999998887766555555554444321 1334444555555
Q ss_pred HcC
Q 006388 353 KFG 355 (647)
Q Consensus 353 ~~g 355 (647)
+.+
T Consensus 284 ~d~ 286 (1134)
T 3spa_A 284 KDG 286 (1134)
T ss_dssp CCS
T ss_pred cCC
Confidence 544
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=9.8e-14 Score=132.90 Aligned_cols=225 Identities=14% Similarity=0.060 Sum_probs=162.1
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 006388 241 VSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFY 320 (647)
Q Consensus 241 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 320 (647)
..|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...+..+.+.....
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------------ 71 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM------------ 71 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc------------
Confidence 455666666666666666666666666554 444555555555555555555555554444321000
Q ss_pred HhcCCHHHHHHHHhhcCCCC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHH
Q 006388 321 GKCGNIEDSHRLFNEMNVRD----EVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGR 396 (647)
Q Consensus 321 ~~~g~~~~A~~~~~~~~~~d----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 396 (647)
.++ ...|..+...|...|++++|+..|++..+. .|+. ..+...|++++|.
T Consensus 72 -----------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~ 125 (258)
T 3uq3_A 72 -----------------RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKEL 125 (258)
T ss_dssp -----------------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHH
T ss_pred -----------------ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHH
Confidence 001 456677777788888888888888888773 4553 2355567888888
Q ss_pred HHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 006388 397 HYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELD 474 (647)
Q Consensus 397 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 474 (647)
..++.+.. ..+.+...+..+...+...|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++..
T Consensus 126 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 126 KKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 88888875 22335577888889999999999999999887 3333 57889999999999999999999999999999
Q ss_pred CCCchhHHHHHHhhhhCCChhHHHHHHHHHHhC
Q 006388 475 PYNPASYVLLSSIYASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 475 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 507 (647)
|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 204 PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999988763
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.59 E-value=3.9e-14 Score=132.09 Aligned_cols=194 Identities=13% Similarity=0.031 Sum_probs=153.4
Q ss_pred CcchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 006388 307 ISFITVSNALVTFYGKCGNIEDSHRLFNEMN---VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPD-EVTLIGV 382 (647)
Q Consensus 307 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l 382 (647)
+++...+..+...+.+.|++++|...|++.. ..+...|..+...+.+.|++++|+..|++..+. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 4556677778888889999999999998765 336778888889999999999999999998874 454 4577788
Q ss_pred HHHHhcC-----------CcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCChhhHHHH
Q 006388 383 LSACSRA-----------GLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPPDAIGWATL 450 (647)
Q Consensus 383 l~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 450 (647)
..++... |++++|...|+...+. -+.+...+..+..+|...|++++|.+.|++. ....++..|..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 8888888 9999999999999864 2335678889999999999999999999987 222678899999
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHH
Q 006388 451 LSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTM 504 (647)
Q Consensus 451 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 504 (647)
...+...|++++|+..++++++.+|+++..+..++.+|...|++++|.+.+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998864
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.1e-13 Score=132.63 Aligned_cols=235 Identities=12% Similarity=0.042 Sum_probs=166.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCC----HHHHHH
Q 006388 209 VFVGSALVDMYCKCKSIKYAESVFRTMAW--KNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNG--IEPD----DFTLGS 280 (647)
Q Consensus 209 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~t~~~ 280 (647)
...+..+...|...|++++|...|++... .+..+|..+...|...|++++|+..|++..+.. ..|+ ..++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45778899999999999999999987532 678899999999999999999999999987642 1112 244444
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHH
Q 006388 281 VISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFGKANET 360 (647)
Q Consensus 281 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A 360 (647)
+...+...|++++|...+..+.+.. ++ ...+...|++++|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~---------------------------------~~-------~~~~~~~~~~~~a 124 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH---------------------------------RT-------ADILTKLRNAEKE 124 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---------------------------------CC-------HHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC---------------------------------ch-------hHHHHHHhHHHHH
Confidence 4455555555555555555544432 11 1234455667777
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 006388 361 IDLFEKMLSHGLKPDE-VTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM- 438 (647)
Q Consensus 361 ~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~- 438 (647)
+..++++... .|+. ..+..+...+...|++++|...|+.+.+. .+.+...+..+...|.+.|++++|.+.++++
T Consensus 125 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 125 LKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp HHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 7777777663 3333 35666667777778888888888777653 2335677778888888888888888888776
Q ss_pred CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccC------CCCchhHHHHHHh
Q 006388 439 PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELD------PYNPASYVLLSSI 487 (647)
Q Consensus 439 ~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~ 487 (647)
...| +...|..+...+...|++++|...+++++++. |.+...+..+..+
T Consensus 201 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 201 EKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 3334 47778888888888999999999999888887 7766666655543
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.56 E-value=3.1e-13 Score=140.90 Aligned_cols=378 Identities=11% Similarity=0.010 Sum_probs=202.0
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCCh---HHHHHHhccCCCCCchHHHHHHHHHHhcCCh
Q 006388 48 MLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSPLVDMYAKLGLI---YDAKRGFDELPEKNIVMYNTMITGLLRRGLV 124 (647)
Q Consensus 48 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 124 (647)
+...+.+.|++++|.+.+..+.+.| ++..+..|..+|...|+. ++|...|+...
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~-------------------- 65 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAA-------------------- 65 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-------------------------------------------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHH--------------------
Confidence 3444555666666666666666655 222333344444444544 45555544443
Q ss_pred HHHHHHhhcCCCCCeehHHHHHHHHHhCC-----ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCCh---HHHHHH
Q 006388 125 EESRRLFRGMKDKDSISWTTMITGLMQNG-----LEREAIDLFREMRLEGLAMDQFTFGSVLTACGGLLAL---EEGKQI 196 (647)
Q Consensus 125 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~---~~a~~~ 196 (647)
+.++..+..|...+...+ ++++|+..|++..+.|.. ..+..+...+...+.. ..+.+.
T Consensus 66 -----------~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~ 131 (452)
T 3e4b_A 66 -----------DTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQ 131 (452)
T ss_dssp ----------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHH
T ss_pred -----------hCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 445556666666455544 667888888887776532 2444455555443332 234444
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcC----CHHHHHHHHhcCCCCChhHHHHHHHHHHhcC---ChhHHHHHHHHHHHC
Q 006388 197 HAFIIRNDHKDNVFVGSALVDMYCKCK----SIKYAESVFRTMAWKNVVSWTAMLVGYGQNG---CSEEAVKIFCNMQRN 269 (647)
Q Consensus 197 ~~~~~~~g~~~~~~~~~~li~~y~~~g----~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 269 (647)
+....+.| +......|...|...+ ..+.+..+++.....++.++..|...|...| +.++|++.|++..+.
T Consensus 132 ~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~ 208 (452)
T 3e4b_A 132 ISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSR 208 (452)
T ss_dssp HHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHC
Confidence 44444444 3445566777777776 4455566666666667778888888888888 777888888877776
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHH
Q 006388 270 GIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVS 349 (647)
Q Consensus 270 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~ 349 (647)
| .++...+..+...+.... ...+++++|.+.|++....++..+..+..
T Consensus 209 g-~~~a~~~~~Lg~~y~~g~-------------------------------~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~ 256 (452)
T 3e4b_A 209 G-TVTAQRVDSVARVLGDAT-------------------------------LGTPDEKTAQALLEKIAPGYPASWVSLAQ 256 (452)
T ss_dssp T-CSCHHHHHHHHHHHTCGG-------------------------------GSSCCHHHHHHHHHHHGGGSTHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHhCCC-------------------------------CCCCCHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 6 333333333333333220 00134444444444443223444444444
Q ss_pred H-H--HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC-----cHHHHHHHHHHHHHhcCCCcChHHHHHHHHH
Q 006388 350 G-Y--AKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAG-----LVEKGRHYFEIMVKEYGIRPIHDHYTCMIDI 421 (647)
Q Consensus 350 ~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 421 (647)
. | ...+++++|+..|++..+.| +...+..+...|. .| ++++|..+|+... ..+...+..|..+
T Consensus 257 ~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~ 327 (452)
T 3e4b_A 257 LLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQI 327 (452)
T ss_dssp HHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHH
Confidence 4 2 34566777777777776655 4444444544444 33 7777777776553 3345566666666
Q ss_pred HHH----cCCHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCC
Q 006388 422 LSR----AGRLEEAKSFINKMPFPPDAIGWATLLSSCRI----HGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGK 493 (647)
Q Consensus 422 ~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 493 (647)
|.. ..++++|.++|++.-..-+......|...|.. ..+.++|...++++.+.++.+.......+......++
T Consensus 328 y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~ 407 (452)
T 3e4b_A 328 YRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQ 407 (452)
T ss_dssp HHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHH
T ss_pred HHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHH
Confidence 655 33778888888776222344455566666653 3578888888888887776443333333333344556
Q ss_pred hhHHHHHHHHHHh
Q 006388 494 WDHVSQLRRTMRE 506 (647)
Q Consensus 494 ~~~a~~~~~~m~~ 506 (647)
.++|.++.++.++
T Consensus 408 ~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 408 RAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766543
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.55 E-value=1.8e-13 Score=132.52 Aligned_cols=240 Identities=7% Similarity=-0.098 Sum_probs=173.5
Q ss_pred cCChhHHHHHHHHHHHCCCC--C-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHH
Q 006388 253 NGCSEEAVKIFCNMQRNGIE--P-DDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDS 329 (647)
Q Consensus 253 ~g~~~~A~~~~~~m~~~g~~--p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 329 (647)
.|++++|+..|+++.+.... | +..++..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 45666677777666654211 1 23455566666666777777777777766654 34566777788888888888888
Q ss_pred HHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc
Q 006388 330 HRLFNEMN---VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEY 406 (647)
Q Consensus 330 ~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 406 (647)
.+.|++.. ..+..+|..+...|...|++++|+..|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 88888765 346778888889999999999999999999874 566555555555667779999999999887764
Q ss_pred CCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-----hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchh
Q 006388 407 GIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPPD-----AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPAS 480 (647)
Q Consensus 407 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 480 (647)
.+++...+ .++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++++.+|++...
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 23343444 3677777888889999998876 33332 5788899999999999999999999999999976544
Q ss_pred HHHHHHhhhhCCChhHHHHHH
Q 006388 481 YVLLSSIYASKGKWDHVSQLR 501 (647)
Q Consensus 481 ~~~l~~~~~~~g~~~~a~~~~ 501 (647)
+ ..++...|++++|.+.+
T Consensus 252 ~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 H---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHhhHHHH
Confidence 4 66778889998887765
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.54 E-value=3.8e-13 Score=130.11 Aligned_cols=245 Identities=13% Similarity=-0.025 Sum_probs=130.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHh
Q 006388 212 GSALVDMYCKCKSIKYAESVFRTMAW---KNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDD--FTLGSVISSCA 286 (647)
Q Consensus 212 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~ 286 (647)
.......|.+.|++++|...|++..+ .+..+|..+...|...|++++|+..|++....+-.|+. ..+..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 34455566666666666666665532 23445666666666666666666666666653211111 12444444555
Q ss_pred ccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHH
Q 006388 287 NLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFGKANETIDLFEK 366 (647)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~ 366 (647)
..|++++|...+..+.+.. +. +..+|..+...|...|++++|+..|++
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~-------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~ 133 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TT-------------------------------RLDMYGQIGSYFYNKGNFPLAIQYMEK 133 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TT-------------------------------CTHHHHHHHHHHHHTTCHHHHHHHHGG
T ss_pred HcccHHHHHHHHHHHHhcC-cc-------------------------------cHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 5555555555555554432 22 334444444455555555555555554
Q ss_pred HHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCC---HHHHHHHHHhC----
Q 006388 367 MLSHGLKPD-EVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGR---LEEAKSFINKM---- 438 (647)
Q Consensus 367 m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~---- 438 (647)
..+. .|+ ...+..+...+...+++++|...|+.+.+.. +.+...+..+...+...|+ +++|...++++
T Consensus 134 al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 209 (272)
T 3u4t_A 134 QIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC 209 (272)
T ss_dssp GCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred Hhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH
Confidence 4432 222 2233333312222335555555555555421 2224445555555555555 44455554443
Q ss_pred CCCCC------hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCC
Q 006388 439 PFPPD------AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKG 492 (647)
Q Consensus 439 ~~~p~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 492 (647)
...|+ ..+|..+...+...|++++|...++++++++|+++.+...+..+....+
T Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 210 APGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp GGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred hcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 11122 2467778888889999999999999999999999888777766655443
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.50 E-value=2.9e-13 Score=126.12 Aligned_cols=200 Identities=10% Similarity=-0.062 Sum_probs=128.5
Q ss_pred CCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhH
Q 006388 1 MPFHDGVSWNLLISGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVG 80 (647)
Q Consensus 1 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 80 (647)
|| +++..|..+...+.+.|++++|+..|++..+.. |.+...+..+...+.+.|++++|...++++++.. +.+...+
T Consensus 1 ~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~ 76 (217)
T 2pl2_A 1 MQ-TAEQNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGY 76 (217)
T ss_dssp ----CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred CC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHH
Confidence 45 567789999999999999999999999999876 7788889999999999999999999999999887 4567777
Q ss_pred HHHHHHHHhc-----------CChHHHHHHhccCCCCCchHHHHHHHHHHhcCChHHHHHHhhcCCCCCeehHHHHHHHH
Q 006388 81 SPLVDMYAKL-----------GLIYDAKRGFDELPEKNIVMYNTMITGLLRRGLVEESRRLFRGMKDKDSISWTTMITGL 149 (647)
Q Consensus 81 ~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 149 (647)
..+..+|.+. |++++|...|++..+. ...+...|..+...|
T Consensus 77 ~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----------------------------~P~~~~~~~~lg~~~ 128 (217)
T 2pl2_A 77 MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV----------------------------NPRYAPLHLQRGLVY 128 (217)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH----------------------------CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh----------------------------CcccHHHHHHHHHHH
Confidence 7788777776 4444444444433210 011345566666666
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 006388 150 MQNGLEREAIDLFREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAE 229 (647)
Q Consensus 150 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 229 (647)
.+.|++++|+..|++..+.. .+...+..+..++...|++++|...++.+++.. +.+..++..+...|.+.|++++|.
T Consensus 129 ~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~ 205 (217)
T 2pl2_A 129 ALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAA 205 (217)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------
T ss_pred HHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHH
Confidence 66677777777776666654 455556666666666666666666666666553 334455555666666666666666
Q ss_pred HHHhcC
Q 006388 230 SVFRTM 235 (647)
Q Consensus 230 ~~~~~~ 235 (647)
..|++.
T Consensus 206 ~~~~~~ 211 (217)
T 2pl2_A 206 RAAALE 211 (217)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 655543
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.49 E-value=6.8e-12 Score=119.73 Aligned_cols=163 Identities=10% Similarity=0.038 Sum_probs=84.4
Q ss_pred HHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcCCc
Q 006388 316 LVTFYGKCGNIEDSHRLFNEMN---VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDE-VTLIGVLSACSRAGL 391 (647)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~ 391 (647)
+...|...|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++...+..|+. ..+..+...+...|+
T Consensus 77 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 156 (252)
T 2ho1_A 77 LAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKK 156 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCC
Confidence 3333444444444444443332 123444555555555555555555555555542233432 244555555556666
Q ss_pred HHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHH
Q 006388 392 VEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAES 469 (647)
Q Consensus 392 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 469 (647)
+++|..+|+.+.+.. +.+...+..+...|...|++++|.+.++++ ...| +...+..+...+...|+.++|...+++
T Consensus 157 ~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 234 (252)
T 2ho1_A 157 PAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQ 234 (252)
T ss_dssp HHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 666666666555431 223455555666666666666666666554 2222 344555555556666666666666666
Q ss_pred HhccCCCCchh
Q 006388 470 LLELDPYNPAS 480 (647)
Q Consensus 470 ~~~~~p~~~~~ 480 (647)
+.+..|+++..
T Consensus 235 ~~~~~p~~~~~ 245 (252)
T 2ho1_A 235 LKRLYPGSLEY 245 (252)
T ss_dssp HHHHCTTSHHH
T ss_pred HHHHCCCCHHH
Confidence 66666655443
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.49 E-value=3.5e-12 Score=119.11 Aligned_cols=198 Identities=10% Similarity=0.076 Sum_probs=152.3
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006388 308 SFITVSNALVTFYGKCGNIEDSHRLFNEMN---VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLS 384 (647)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 384 (647)
.+..++..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|...|+++.+.. +.+..++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 345566677777778888888888777654 3356677888888888888888888888887742 334557777788
Q ss_pred HHhcC-CcHHHHHHHHHHHHHhcCCCcC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCh
Q 006388 385 ACSRA-GLVEKGRHYFEIMVKEYGIRPI-HDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNV 460 (647)
Q Consensus 385 a~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~ 460 (647)
.+... |++++|...++.+.+ .+..|+ ...+..+...+...|++++|.+.++++ ...| +...|..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 88888 888888888888876 233343 567778888888888888888888876 2334 477788888888888889
Q ss_pred hHHHHHHHHHhccCC-CCchhHHHHHHhhhhCCChhHHHHHHHHHHhC
Q 006388 461 EIGKWAAESLLELDP-YNPASYVLLSSIYASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 461 ~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 507 (647)
++|...++++++..| .++..+..++..+...|+.++|..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 999988888888888 88888888888888888888888888887653
No 46
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.48 E-value=2.3e-12 Score=134.32 Aligned_cols=345 Identities=10% Similarity=-0.016 Sum_probs=214.3
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCCh---HHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 006388 144 TMITGLMQNGLEREAIDLFREMRLEGLAMDQFTFGSVLTACGGLLAL---EEGKQIHAFIIRNDHKDNVFVGSALVDMYC 220 (647)
Q Consensus 144 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 220 (647)
.+...+.+.|++++|+++|++..+.| +...+..+-..+...|+. ++|.+.++...+. +...+..|..++.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 35667778899999999999987765 233344444445556666 7888888887754 4445566666555
Q ss_pred hcC-----CHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChh---HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 006388 221 KCK-----SIKYAESVFRTMAWK-NVVSWTAMLVGYGQNGCSE---EAVKIFCNMQRNGIEPDDFTLGSVISSCANLASL 291 (647)
Q Consensus 221 ~~g-----~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 291 (647)
..| +.++|...|++...+ +..++..|...|...+..+ ++.+.+......|. ......+...+...+.+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCc
Confidence 554 677888888876543 4557777888887766543 34555555554442 33444555556666655
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcC---CHHHHHHHHhhcCC---CChhhHHHHHHHHHHc----CChHHHH
Q 006388 292 EEGTQFHGRSLVTGLISFITVSNALVTFYGKCG---NIEDSHRLFNEMNV---RDEVSWTALVSGYAKF----GKANETI 361 (647)
Q Consensus 292 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~---~d~~~~~~li~~~~~~----g~~~~A~ 361 (647)
+.+......+.+.-...++..+..|..+|.+.| +.++|.+.|++... ++...+..+...|... +++++|+
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 555444333333333334447778888888888 88888888887652 2334446666666554 6888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHH-H--hcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcC-----CHHHHHH
Q 006388 362 DLFEKMLSHGLKPDEVTLIGVLSA-C--SRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAG-----RLEEAKS 433 (647)
Q Consensus 362 ~~~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~ 433 (647)
..|++.. .| +...+..+... + ...+++++|..+|+...+. | +...+..|..+|. .| ++++|.+
T Consensus 238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 8888876 32 33344444444 3 4578888888888888753 3 5667777777776 55 8888888
Q ss_pred HHHhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCchhHHHHHHhhhh----CCChhHHHHHHHHHH
Q 006388 434 FINKMPFPPDAIGWATLLSSCRI----HGNVEIGKWAAESLLELDPYNPASYVLLSSIYAS----KGKWDHVSQLRRTMR 505 (647)
Q Consensus 434 ~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~ 505 (647)
+|++.- ..++..+..|...|.. ..+.++|...++++.+.+ ++.....|+.+|.. ..+.++|...+++..
T Consensus 309 ~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 309 HFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp HHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 888887 5567777777777665 338888888888877643 56778888888875 457888888888888
Q ss_pred hCCCc
Q 006388 506 EKGVR 510 (647)
Q Consensus 506 ~~g~~ 510 (647)
+.|..
T Consensus 386 ~~g~~ 390 (452)
T 3e4b_A 386 AQDTP 390 (452)
T ss_dssp TTCCH
T ss_pred HCCCH
Confidence 87753
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.48 E-value=1e-12 Score=124.53 Aligned_cols=170 Identities=13% Similarity=0.083 Sum_probs=92.5
Q ss_pred HHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcH
Q 006388 316 LVTFYGKCGNIEDSHRLFNEMN---VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLV 392 (647)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 392 (647)
+...|.+.|++++|.+.|+++. ..+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++
T Consensus 63 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~ 141 (243)
T 2q7f_A 63 FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQP 141 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccH
Confidence 3334444444444444444332 2234455555555556666666666666655532 22344555555566666666
Q ss_pred HHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 006388 393 EKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESL 470 (647)
Q Consensus 393 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 470 (647)
++|..+++.+.+. .+.+...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++
T Consensus 142 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 142 KLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKA 219 (243)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666665543 1234455566666666666666666666655 2222 3556666666666666666666666666
Q ss_pred hccCCCCchhHHHHHHhh
Q 006388 471 LELDPYNPASYVLLSSIY 488 (647)
Q Consensus 471 ~~~~p~~~~~~~~l~~~~ 488 (647)
++..|+++..+..+..+.
T Consensus 220 ~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 220 IDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHCTTCHHHHHHHTC--
T ss_pred HccCcchHHHHHHHHHHH
Confidence 666666666655554443
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.48 E-value=2.6e-12 Score=122.60 Aligned_cols=197 Identities=10% Similarity=-0.036 Sum_probs=170.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006388 310 ITVSNALVTFYGKCGNIEDSHRLFNEMN---VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSAC 386 (647)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 386 (647)
...+..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 4566778888888899998888888765 3467789999999999999999999999998853 33566888888999
Q ss_pred hcCCcHHHHHHHHHHHHHhcCCCc-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHH
Q 006388 387 SRAGLVEKGRHYFEIMVKEYGIRP-IHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIG 463 (647)
Q Consensus 387 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a 463 (647)
...|++++|.++++.+.+ .+..| +...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999875 23445 4678889999999999999999999987 3334 578899999999999999999
Q ss_pred HHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhCC
Q 006388 464 KWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREKG 508 (647)
Q Consensus 464 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 508 (647)
...++++++..|.++..+..++.+|...|++++|.++++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999998743
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.48 E-value=1.8e-11 Score=118.49 Aligned_cols=224 Identities=11% Similarity=-0.028 Sum_probs=128.6
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCcchhHHH
Q 006388 239 NVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCAN----LASLEEGTQFHGRSLVTGLISFITVSN 314 (647)
Q Consensus 239 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 314 (647)
++.++..+...|...|++++|+..|++..+.+ +...+..+...+.. .+++++|...+....+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 55667777777777788888888887777632 33444445555555 555666666555555543
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--
Q 006388 315 ALVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAK----FGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSR-- 388 (647)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-- 388 (647)
+..++..+...|.. .+++++|+..|++..+.+ +...+..+...+..
T Consensus 73 -------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 73 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred -------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 33344444444444 555555555555555443 34444445555555
Q ss_pred --CCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cC
Q 006388 389 --AGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSR----AGRLEEAKSFINKMPFPPDAIGWATLLSSCRI----HG 458 (647)
Q Consensus 389 --~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~~ 458 (647)
.+++++|..+|+...+. + +...+..+...|.. .+++++|.+.+++.-...+...+..+...+.. .+
T Consensus 125 ~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred CcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCc
Confidence 55555555555555442 2 33445555555555 56666666666554111234555556666666 66
Q ss_pred ChhHHHHHHHHHhccCCCCchhHHHHHHhhhh----CCChhHHHHHHHHHHhCC
Q 006388 459 NVEIGKWAAESLLELDPYNPASYVLLSSIYAS----KGKWDHVSQLRRTMREKG 508 (647)
Q Consensus 459 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g 508 (647)
++++|...++++.+.+| +..+..|+.+|.. .|++++|.+.+++..+.|
T Consensus 201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 201 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 66666666666666654 4566666666666 667777777776666544
No 50
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.47 E-value=2.5e-12 Score=129.90 Aligned_cols=243 Identities=10% Similarity=0.028 Sum_probs=180.3
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCC-hHHHHHHHHHHHHhCCCcchhHHHHHH
Q 006388 240 VVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPD-DFTLGSVISSCANLAS-LEEGTQFHGRSLVTGLISFITVSNALV 317 (647)
Q Consensus 240 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li 317 (647)
..+|+.+...+...|++++|+..|++.... .|+ ...|..+..++...|+ +++|...+..+++.. +.+..+|..+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 356777777777788888888888877764 343 4566666777777775 888888887777765 44667777788
Q ss_pred HHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc-CCcH
Q 006388 318 TFYGKCGNIEDSHRLFNEMN---VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKP-DEVTLIGVLSACSR-AGLV 392 (647)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~-~g~~ 392 (647)
.+|.+.|++++|+..|+++. ..+...|..+..++.+.|++++|+..|+++++. .| +...|..+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcc
Confidence 88888888888888888765 446778888888888888999999999888875 44 44577777777777 5554
Q ss_pred HHH-----HHHHHHHHHhcCCCcChHHHHHHHHHHHHcC--CHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcC------
Q 006388 393 EKG-----RHYFEIMVKEYGIRPIHDHYTCMIDILSRAG--RLEEAKSFINKMPFPPD-AIGWATLLSSCRIHG------ 458 (647)
Q Consensus 393 ~~a-----~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~~------ 458 (647)
++| +..|+..++. -+-+...|..+..+|...| ++++|.+.+.++...|+ ...+..++..+.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp SHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred hHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 666 4777777653 1234577888888888888 58888888887754554 677888888887764
Q ss_pred ---ChhHHHHHHHHH-hccCCCCchhHHHHHHhhh
Q 006388 459 ---NVEIGKWAAESL-LELDPYNPASYVLLSSIYA 489 (647)
Q Consensus 459 ---~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~ 489 (647)
..++|+.+++++ .+++|.....|..++..+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 258899999999 8999988888877766544
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.47 E-value=2e-11 Score=118.14 Aligned_cols=227 Identities=11% Similarity=-0.068 Sum_probs=165.0
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-ChhHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006388 207 DNVFVGSALVDMYCKCKSIKYAESVFRTMAWK-NVVSWTAMLVGYGQ----NGCSEEAVKIFCNMQRNGIEPDDFTLGSV 281 (647)
Q Consensus 207 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 281 (647)
.+...+..+...|...|++++|...|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 35677888999999999999999999987654 67789999999999 999999999999999875 56666666
Q ss_pred HHHHhc----cCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHH----
Q 006388 282 ISSCAN----LASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAK---- 353 (647)
Q Consensus 282 l~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~---- 353 (647)
...+.. .++.++|...+....+.+ +..++..+...|..
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~----------------------------------~~~a~~~lg~~~~~~~~~ 126 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK----------------------------------YAEGCASLGGIYHDGKVV 126 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT----------------------------------CHHHHHHHHHHHHHCSSS
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC----------------------------------CccHHHHHHHHHHcCCCc
Confidence 666666 667777777666665543 33344445555555
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHH----c
Q 006388 354 FGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSR----AGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSR----A 425 (647)
Q Consensus 354 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~ 425 (647)
.+++++|+..|++..+.+ +...+..+...+.. .+++++|..+|+...+. .+...+..+..+|.. .
T Consensus 127 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 127 TRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSC
T ss_pred ccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCC
Confidence 566666666666666654 34455555555655 67777777777777653 245666777777777 8
Q ss_pred CCHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHhccCCCC
Q 006388 426 GRLEEAKSFINKMPFPPDAIGWATLLSSCRI----HGNVEIGKWAAESLLELDPYN 477 (647)
Q Consensus 426 g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~ 477 (647)
+++++|.+.+++.-...+...+..+...+.. .+++++|...++++.+.+|++
T Consensus 200 ~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 200 KNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 8888888888776211236677778888887 888999999999999888854
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.47 E-value=1.1e-12 Score=124.27 Aligned_cols=196 Identities=10% Similarity=0.130 Sum_probs=155.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006388 309 FITVSNALVTFYGKCGNIEDSHRLFNEMN---VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSA 385 (647)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 385 (647)
....+..+...+...|++++|...|+++. ..+...|..+...|...|++++|+..|++..+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 45566777788888999999999888875 3367789999999999999999999999998853 3356688888899
Q ss_pred HhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHH
Q 006388 386 CSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIG 463 (647)
Q Consensus 386 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a 463 (647)
+...|++++|..+++.+.+. .+.+...+..+...+.+.|++++|.+.++++ ...| +...|..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999874 2446778999999999999999999999987 3333 578899999999999999999
Q ss_pred HHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhC
Q 006388 464 KWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 464 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 507 (647)
...++++++..|+++.++..++.+|...|++++|.+.++++.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999998774
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.47 E-value=9.4e-12 Score=116.17 Aligned_cols=208 Identities=12% Similarity=0.054 Sum_probs=144.4
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 006388 239 NVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVT 318 (647)
Q Consensus 239 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 318 (647)
+...|..+...+...|++++|++.|+++.+.. | .+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~----------------------------------~~~~~~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--P----------------------------------KNELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T----------------------------------TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--c----------------------------------cchHHHHHHHH
Confidence 34556666666666777777777666665532 2 12333444555
Q ss_pred HHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHH
Q 006388 319 FYGKCGNIEDSHRLFNEMN---VRDEVSWTALVSGYAKF-GKANETIDLFEKMLSHGLKPD-EVTLIGVLSACSRAGLVE 393 (647)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 393 (647)
.|...|++++|.+.|+++. ..+..+|..+...|... |++++|+..|+++.+.+..|+ ...+..+..++...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 5555555555555555543 23556677777777788 888888888888877333444 346777778888888888
Q ss_pred HHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC--CChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 006388 394 KGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFP--PDAIGWATLLSSCRIHGNVEIGKWAAESL 470 (647)
Q Consensus 394 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 470 (647)
+|...|+.+.+. .+.+...+..+...+.+.|++++|.+.++++ ... .+...+..+...+...|+.+.+...++.+
T Consensus 131 ~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 131 LAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 888888888764 2334677888888899999999999988877 223 35667777777788899999999999999
Q ss_pred hccCCCCchhHHHH
Q 006388 471 LELDPYNPASYVLL 484 (647)
Q Consensus 471 ~~~~p~~~~~~~~l 484 (647)
.+..|+++.....+
T Consensus 209 ~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 209 QANFPYSEELQTVL 222 (225)
T ss_dssp HHHCTTCHHHHHHH
T ss_pred HHhCCCCHHHHHHh
Confidence 98999887665544
No 54
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.46 E-value=5.5e-10 Score=120.45 Aligned_cols=438 Identities=7% Similarity=0.003 Sum_probs=286.2
Q ss_pred ChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCC---hHHHH
Q 006388 21 SVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSPLVDMYAKLGL---IYDAK 97 (647)
Q Consensus 21 ~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~ 97 (647)
...+-+..|++.+..+ |-|..+|..++..+.+.++++.++.+++.++.. ++.....|...+..-.+.|. ++.+.
T Consensus 47 ~~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp CCSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred CCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 4556677777777776 778899999999999889999999999999887 36677788888888888888 99999
Q ss_pred HHhccCCC-----CCchHHHHHHHHHHhcCCh--------HHHHHHhhcCC------CC-CeehHHHHHHHHHh------
Q 006388 98 RGFDELPE-----KNIVMYNTMITGLLRRGLV--------EESRRLFRGMK------DK-DSISWTTMITGLMQ------ 151 (647)
Q Consensus 98 ~~~~~~~~-----~~~~~~~~li~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~li~~~~~------ 151 (647)
.+|++... |++..|...+.-..+.++. +...++|+... .+ +...|...+.....
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 99987763 6777888877766665543 33446666422 22 33567777765432
Q ss_pred ---CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 006388 152 ---NGLEREAIDLFREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYA 228 (647)
Q Consensus 152 ---~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 228 (647)
.++.+.+..+|++.+......-..+|..........+ ...+.+++.+. ...++.|
T Consensus 204 ~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e~---------------------~~~y~~A 261 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVN-QLTARRHIGEL---------------------SAQYMNA 261 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHC-TTTHHHHHHHH---------------------HHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcC-cchHHHHHHHh---------------------hHHHHHH
Confidence 3346678888888775211111112211111100000 00111111110 0112222
Q ss_pred HHHHhc-------CCC--------------C--C------hhHHHHHHHHHHhcCC-------hhHHHHHHHHHHHCCCC
Q 006388 229 ESVFRT-------MAW--------------K--N------VVSWTAMLVGYGQNGC-------SEEAVKIFCNMQRNGIE 272 (647)
Q Consensus 229 ~~~~~~-------~~~--------------~--~------~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~ 272 (647)
...+.+ +.. | + ...|...+.---.++. .+.+..+|++.... .+
T Consensus 262 r~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p 340 (679)
T 4e6h_A 262 RSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VC 340 (679)
T ss_dssp HHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cC
Confidence 222221 100 0 0 2345555554333321 23455677777664 23
Q ss_pred CCHHHHHHHHHHHhccCChHHHH-HHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-------------
Q 006388 273 PDDFTLGSVISSCANLASLEEGT-QFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNV------------- 338 (647)
Q Consensus 273 p~~~t~~~ll~a~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------- 338 (647)
-+...|.....-+...|+.+.|. .+++..+.. ++.+..++-.++...-+.|+++.|.++|+++..
T Consensus 341 ~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~ 419 (679)
T 4e6h_A 341 FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDD 419 (679)
T ss_dssp TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 35566666666677778888886 999998864 456677788888889999999999999988753
Q ss_pred CC------------hhhHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhc-CCcHHHHHHHHHHHHH
Q 006388 339 RD------------EVSWTALVSGYAKFGKANETIDLFEKMLSH-GLKPDEVTLIGVLSACSR-AGLVEKGRHYFEIMVK 404 (647)
Q Consensus 339 ~d------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~ 404 (647)
|+ ...|...+....+.|..+.|..+|.+..+. + .+....|......-.+ .++.+.|..+|+...+
T Consensus 420 p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk 498 (679)
T 4e6h_A 420 PTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLK 498 (679)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred CcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 21 236888888888889999999999999886 2 1223334332222223 3558999999999998
Q ss_pred hcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC----ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCch
Q 006388 405 EYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP----DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPA 479 (647)
Q Consensus 405 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 479 (647)
.+ +.+...+...++.....|+.+.|..+|++. ...| ....|...+.--.++|+.+.+..+.+++.+..|+++
T Consensus 499 ~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~- 575 (679)
T 4e6h_A 499 YF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN- 575 (679)
T ss_dssp HH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC-
T ss_pred HC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-
Confidence 64 335566778899889999999999999987 2223 256899999999999999999999999999999764
Q ss_pred hHHHHHHhhh
Q 006388 480 SYVLLSSIYA 489 (647)
Q Consensus 480 ~~~~l~~~~~ 489 (647)
....+++-|.
T Consensus 576 ~~~~f~~ry~ 585 (679)
T 4e6h_A 576 KLEEFTNKYK 585 (679)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhc
Confidence 3333444443
No 55
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.45 E-value=1e-11 Score=120.03 Aligned_cols=238 Identities=9% Similarity=0.009 Sum_probs=167.5
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC----hhHHHHHH
Q 006388 174 QFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMAW--KN----VVSWTAML 247 (647)
Q Consensus 174 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~----~~~~~~li 247 (647)
...+......+...|++++|...+..+++.. +.+..++..+...|.+.|++++|...|++... .+ ..+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3455667778889999999999999999875 34566888899999999999999999998754 22 23589999
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCH
Q 006388 248 VGYGQNGCSEEAVKIFCNMQRNGIEPD-DFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNI 326 (647)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 326 (647)
..|...|++++|+..|++..+. .|+ ...+ ..+...|...|++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~-----------------------------------~~l~~~~~~~~~~ 124 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDR--DTTRLDMY-----------------------------------GQIGSYFYNKGNF 124 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCTHHH-----------------------------------HHHHHHHHHTTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhc--CcccHHHH-----------------------------------HHHHHHHHHccCH
Confidence 9999999999999999999875 333 2333 3355556666777
Q ss_pred HHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCc---HHHHHHHH
Q 006388 327 EDSHRLFNEMNV---RDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPD-EVTLIGVLSACSRAGL---VEKGRHYF 399 (647)
Q Consensus 327 ~~A~~~~~~~~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~---~~~a~~~~ 399 (647)
++|.+.|++... .+...|..+...+...+++++|+..|++..+. .|+ ...+..+..++...|+ +++|...+
T Consensus 125 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 202 (272)
T 3u4t_A 125 PLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYY 202 (272)
T ss_dssp HHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHH
T ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHH
Confidence 777777766652 24556666662333445788888888887764 344 4455666666666666 66777777
Q ss_pred HHHHHhcCCCcC------hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-hhhHHHHH
Q 006388 400 EIMVKEYGIRPI------HDHYTCMIDILSRAGRLEEAKSFINKM-PFPPD-AIGWATLL 451 (647)
Q Consensus 400 ~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll 451 (647)
+...+...-.|+ ...|..+...|.+.|++++|.+.++++ ...|+ ...+..+.
T Consensus 203 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~ 262 (272)
T 3u4t_A 203 EKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLK 262 (272)
T ss_dssp HHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhh
Confidence 777654333343 256777888888888888888888877 34454 44444443
No 56
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.44 E-value=2.9e-12 Score=129.52 Aligned_cols=225 Identities=11% Similarity=0.082 Sum_probs=192.2
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCC-HHHHHHHHhhcC---CCChhhHHHHHHHH
Q 006388 276 FTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGN-IEDSHRLFNEMN---VRDEVSWTALVSGY 351 (647)
Q Consensus 276 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~---~~d~~~~~~li~~~ 351 (647)
..+..+..++...|++++|...+..+++.. +.+..+++.+...|.+.|+ +++|+..|+++. ..+...|+.+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456667777888999999999999999886 5578889999999999997 999999999886 44788999999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHH-cCCHH
Q 006388 352 AKFGKANETIDLFEKMLSHGLKP-DEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSR-AGRLE 429 (647)
Q Consensus 352 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~ 429 (647)
...|++++|+..|+++++. .| +...|..+..++...|++++|+..|+.+++. -+-+...|+.+..+|.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999985 45 4558889999999999999999999999874 23467889999999999 66657
Q ss_pred HH-----HHHHHhC-CCCCC-hhhHHHHHHHHHhcC--ChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCC--------
Q 006388 430 EA-----KSFINKM-PFPPD-AIGWATLLSSCRIHG--NVEIGKWAAESLLELDPYNPASYVLLSSIYASKG-------- 492 (647)
Q Consensus 430 ~A-----~~~~~~~-~~~p~-~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 492 (647)
+| ++.+++. ...|+ ...|..+...+...| ++++|...++++ +.+|+++..+..|+.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4777766 44564 789999999998887 689999999998 899999999999999999875
Q ss_pred -ChhHHHHHHHHH-Hh
Q 006388 493 -KWDHVSQLRRTM-RE 506 (647)
Q Consensus 493 -~~~~a~~~~~~m-~~ 506 (647)
.+++|.++++++ .+
T Consensus 332 ~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 332 DILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 358999999997 44
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.43 E-value=1.3e-12 Score=134.75 Aligned_cols=196 Identities=9% Similarity=0.004 Sum_probs=132.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCCC---------ChhhHHHHHHHHHHcCC-----------------hHHHHHHH
Q 006388 311 TVSNALVTFYGKCGNIEDSHRLFNEMNVR---------DEVSWTALVSGYAKFGK-----------------ANETIDLF 364 (647)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------d~~~~~~li~~~~~~g~-----------------~~~A~~~~ 364 (647)
.++..+...|...|++++|...|++.... ...+|..+...|...|+ +++|+..+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 44455555566666666666555544311 23356666666777777 77777776
Q ss_pred HHHHHC----CCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcC----hHHHHHHHHHHHHcCCHHHHHHHH
Q 006388 365 EKMLSH----GLKPD-EVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPI----HDHYTCMIDILSRAGRLEEAKSFI 435 (647)
Q Consensus 365 ~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~ 435 (647)
++..+. +-.|. ..++..+...+...|++++|..+++...+...-.++ ...+..+...|...|++++|.+.+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 665431 11122 236666777788888888888888877653211112 236778888888889988888888
Q ss_pred HhC----CCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCC------CchhHHHHHHhhhhCCChhHHHHHH
Q 006388 436 NKM----PFPPD----AIGWATLLSSCRIHGNVEIGKWAAESLLELDPY------NPASYVLLSSIYASKGKWDHVSQLR 501 (647)
Q Consensus 436 ~~~----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~ 501 (647)
++. +...+ ..++..+...+...|++++|...++++++..+. ...++..++.+|...|++++|.+.+
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 766 11111 567788888889999999999999988876443 2457888999999999999999999
Q ss_pred HHHHh
Q 006388 502 RTMRE 506 (647)
Q Consensus 502 ~~m~~ 506 (647)
++..+
T Consensus 367 ~~al~ 371 (411)
T 4a1s_A 367 EQHLQ 371 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98776
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.43 E-value=3e-12 Score=131.56 Aligned_cols=196 Identities=16% Similarity=0.074 Sum_probs=131.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHHcCC--------------------hHHHH
Q 006388 311 TVSNALVTFYGKCGNIEDSHRLFNEMNV-----RD----EVSWTALVSGYAKFGK--------------------ANETI 361 (647)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~d----~~~~~~li~~~~~~g~--------------------~~~A~ 361 (647)
.++..+...|...|++++|...|++... .+ ..++..+...|...|+ +++|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 3445555666666666666666555431 11 3356666667777777 77777
Q ss_pred HHHHHHHHC----CCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcC----hHHHHHHHHHHHHcCCHHHHH
Q 006388 362 DLFEKMLSH----GLKPD-EVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPI----HDHYTCMIDILSRAGRLEEAK 432 (647)
Q Consensus 362 ~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~ 432 (647)
..+++.... +-.|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 777665431 11222 225666777778888888888888877643211122 246777888888888888888
Q ss_pred HHHHhC----CCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------chhHHHHHHhhhhCCChhHHH
Q 006388 433 SFINKM----PFPPD----AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYN------PASYVLLSSIYASKGKWDHVS 498 (647)
Q Consensus 433 ~~~~~~----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~ 498 (647)
+.+++. +..++ ..++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 888765 11112 5577788888888999999999988888764432 557888899999999999999
Q ss_pred HHHHHHHh
Q 006388 499 QLRRTMRE 506 (647)
Q Consensus 499 ~~~~~m~~ 506 (647)
+.+++..+
T Consensus 328 ~~~~~al~ 335 (406)
T 3sf4_A 328 HFAEKHLE 335 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888764
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.43 E-value=5.6e-12 Score=125.54 Aligned_cols=260 Identities=15% Similarity=0.081 Sum_probs=168.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCChHHHHHHHHHHHHh----CCC-cchhHHHH
Q 006388 246 MLVGYGQNGCSEEAVKIFCNMQRNGIEPD-----DFTLGSVISSCANLASLEEGTQFHGRSLVT----GLI-SFITVSNA 315 (647)
Q Consensus 246 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ 315 (647)
....+...|++++|+..|+++.+.. |+ ...+..+...+...|+++.|...+....+. +.. ....++..
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 3344455555555555555554431 22 133444444555555555555555544332 111 12445566
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHHcCC--------------------hHHHHHHHHH
Q 006388 316 LVTFYGKCGNIEDSHRLFNEMNV-----RD----EVSWTALVSGYAKFGK--------------------ANETIDLFEK 366 (647)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~~~~-----~d----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~ 366 (647)
+...|...|++++|...|++... .+ ..++..+...|...|+ +++|+..+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 66677777777777776665431 12 2366677777777777 7778777777
Q ss_pred HHHC----CCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcC----hHHHHHHHHHHHHcCCHHHHHHHHHh
Q 006388 367 MLSH----GLKPD-EVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPI----HDHYTCMIDILSRAGRLEEAKSFINK 437 (647)
Q Consensus 367 m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~ 437 (647)
.... +..|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|.+.+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5432 11122 236667777888889999999888877643211112 34778888899999999999998887
Q ss_pred C----CCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------chhHHHHHHhhhhCCChhHHHHHHHH
Q 006388 438 M----PFPPD----AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYN------PASYVLLSSIYASKGKWDHVSQLRRT 503 (647)
Q Consensus 438 ~----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~ 503 (647)
. +..++ ..++..+...+...|++++|...++++++..|.. ..++..++.+|...|++++|.+.+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 6 11122 5577888888999999999999999988765432 45788999999999999999999998
Q ss_pred HHhC
Q 006388 504 MREK 507 (647)
Q Consensus 504 m~~~ 507 (647)
..+.
T Consensus 329 a~~~ 332 (338)
T 3ro2_A 329 HLEI 332 (338)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8763
No 60
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.43 E-value=1e-11 Score=120.05 Aligned_cols=215 Identities=8% Similarity=-0.055 Sum_probs=144.9
Q ss_pred hCCChhHHHHHHHHHHHCCCCC---ChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 006388 151 QNGLEREAIDLFREMRLEGLAM---DQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKY 227 (647)
Q Consensus 151 ~~g~~~~A~~~~~~m~~~g~~p---d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 227 (647)
..|++++|+..|+++.+..... +..++..+...+...|++++|...+..+++.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 3467788888888877653211 34456667777777888888888888777764 4456777778888888888888
Q ss_pred HHHHHhcCCC---CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 006388 228 AESVFRTMAW---KNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVT 304 (647)
Q Consensus 228 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 304 (647)
|...|++... .+..+|..+...|...|++++|+..|+++.+. .|+.......+..+...|++++|...+......
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888877653 35677888888888888888888888888774 455544444455556667777777777766665
Q ss_pred CCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-------hhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 006388 305 GLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVRD-------EVSWTALVSGYAKFGKANETIDLFEKMLSH 370 (647)
Q Consensus 305 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 370 (647)
. +++...+ .++..+...++.++|.+.++.....+ ...|..+...|...|++++|...|++..+.
T Consensus 174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 3 2333333 35566666666677777776665432 345566666666666666666666666653
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.42 E-value=9.6e-12 Score=112.39 Aligned_cols=164 Identities=15% Similarity=0.120 Sum_probs=132.3
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHH
Q 006388 340 DEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPD-EVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCM 418 (647)
Q Consensus 340 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 418 (647)
+...|..+...|.+.|++++|+..|++..+. .|+ ...+..+..++.+.|++++|...++..... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 4566777888888888888888888888774 454 447777778888888888888888887653 23345677777
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhH
Q 006388 419 IDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDH 496 (647)
Q Consensus 419 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 496 (647)
...+...+++++|.+.+.+. ...| +...|..+...+...|++++|+..++++++.+|.++.++..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 78888888999888888876 3334 477888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 006388 497 VSQLRRTMREK 507 (647)
Q Consensus 497 a~~~~~~m~~~ 507 (647)
|.+.+++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999988763
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.40 E-value=2.3e-12 Score=135.26 Aligned_cols=192 Identities=10% Similarity=-0.019 Sum_probs=160.7
Q ss_pred cchhHHHHHHHHHHhcCCH-HHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006388 308 SFITVSNALVTFYGKCGNI-EDSHRLFNEMN---VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVL 383 (647)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 383 (647)
.+...+..+...|...|++ ++|.+.|++.. ..+...|..+...|.+.|++++|+..|++..+. .|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 3455566666666666777 77777766654 335678888888999999999999999999885 57777888888
Q ss_pred HHHhcC---------CcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHc--------CCHHHHHHHHHhC-CCCC---
Q 006388 384 SACSRA---------GLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRA--------GRLEEAKSFINKM-PFPP--- 442 (647)
Q Consensus 384 ~a~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~~A~~~~~~~-~~~p--- 442 (647)
..+... |++++|...|+...+. .+.+...|..+..+|... |++++|.+.|++. ...|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 899999 9999999999998864 234578889999999998 9999999999988 4455
Q ss_pred -ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHH
Q 006388 443 -DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRT 503 (647)
Q Consensus 443 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 503 (647)
+...|..+...+...|++++|...++++++++|+++.++..++.++...|++++|.+.+.+
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6889999999999999999999999999999999999999999999999999999876544
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.38 E-value=5.3e-12 Score=129.67 Aligned_cols=292 Identities=13% Similarity=-0.003 Sum_probs=185.4
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----C----Ch
Q 006388 173 DQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDN---VFVGSALVDMYCKCKSIKYAESVFRTMAW-----K----NV 240 (647)
Q Consensus 173 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~----~~ 240 (647)
....+......+...|++++|...++.+++...... ..++..+...|...|++++|...|++... . ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 444555666667778888888888888877642211 24566677777777777777777665431 1 13
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 006388 241 VSWTAMLVGYGQNGCSEEAVKIFCNMQRNGI-EPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTF 319 (647)
Q Consensus 241 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 319 (647)
.+|..+...|...|++++|+..|++...... .++. .....++..+...
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~~ 136 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGNV 136 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-------------------------------cchHHHHHHHHHH
Confidence 4566666677777777777777766544210 0010 0012233344444
Q ss_pred HHhcCC--------------------HHHHHHHHhhcC-------CC--ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 006388 320 YGKCGN--------------------IEDSHRLFNEMN-------VR--DEVSWTALVSGYAKFGKANETIDLFEKMLSH 370 (647)
Q Consensus 320 ~~~~g~--------------------~~~A~~~~~~~~-------~~--d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 370 (647)
|...|+ +++|.+.+++.. .+ ...+|..+...|...|++++|+..+++..+.
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 444444 444444444332 11 1345667777777888888888888776642
Q ss_pred CC-CCC----HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcC----hHHHHHHHHHHHHcCCHHHHHHHHHhC---
Q 006388 371 GL-KPD----EVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPI----HDHYTCMIDILSRAGRLEEAKSFINKM--- 438 (647)
Q Consensus 371 g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~--- 438 (647)
.. .++ ..++..+...+...|++++|..+++...+...-.++ ...+..+...|...|++++|.+.+++.
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 10 122 226677777888888888888888877643211111 467788888999999999999888776
Q ss_pred -CCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHhccCC------CCchhHHHHHHhhhhCCChh
Q 006388 439 -PFPPD----AIGWATLLSSCRIHGNVEIGKWAAESLLELDP------YNPASYVLLSSIYASKGKWD 495 (647)
Q Consensus 439 -~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~ 495 (647)
+..++ ..++..+...+...|++++|...+++++++.+ ....++..++.+|...|+..
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 11122 56788888899999999999999999887632 23556778888888777664
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.34 E-value=3.1e-11 Score=109.00 Aligned_cols=167 Identities=12% Similarity=0.056 Sum_probs=141.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006388 309 FITVSNALVTFYGKCGNIEDSHRLFNEMN---VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSA 385 (647)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 385 (647)
++.+|..+...|.+.|++++|.+.|++.. ..++.+|..+...|.+.|++++|+..+.+..... +-+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 56678889999999999999999998875 3477889999999999999999999999988752 2344567777788
Q ss_pred HhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHH
Q 006388 386 CSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIG 463 (647)
Q Consensus 386 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a 463 (647)
+...++++.+...++...+. .+.+...+..+...|.+.|++++|++.|++. ...| +..+|..+...+...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88999999999999988764 3445678889999999999999999999987 4445 578899999999999999999
Q ss_pred HHHHHHHhccCCCCc
Q 006388 464 KWAAESLLELDPYNP 478 (647)
Q Consensus 464 ~~~~~~~~~~~p~~~ 478 (647)
+..++++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999999653
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.33 E-value=4.4e-10 Score=110.74 Aligned_cols=218 Identities=12% Similarity=0.079 Sum_probs=136.7
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-------ccCCh-------HHHHHHHHHHHHhCCCcchhHHHHHHHHHHh
Q 006388 257 EEAVKIFCNMQRNGIEPDDFTLGSVISSCA-------NLASL-------EEGTQFHGRSLVTGLISFITVSNALVTFYGK 322 (647)
Q Consensus 257 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 322 (647)
++|+.+|++..... +-+...|......+. ..|+. ++|..++++.++.-.+.+..++..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45556666665531 223334444444332 23554 6666666666663123345566777777777
Q ss_pred cCCHHHHHHHHhhcCC--C-Chh-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hcCCcHHHHHH
Q 006388 323 CGNIEDSHRLFNEMNV--R-DEV-SWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSAC-SRAGLVEKGRH 397 (647)
Q Consensus 323 ~g~~~~A~~~~~~~~~--~-d~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~ 397 (647)
.|++++|.++|++... | +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777776652 2 333 67777777777778888888888777643 22333443333222 23578888888
Q ss_pred HHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-C---CCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHh
Q 006388 398 YFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-P---FPP--DAIGWATLLSSCRIHGNVEIGKWAAESLL 471 (647)
Q Consensus 398 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 471 (647)
+|+...+.. +.+...|..++..+.+.|++++|..+|++. . ..| ....|..++.....+|+.+.|..+++++.
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 887777642 234567777777777778888888877776 1 244 25577777777777788888888888887
Q ss_pred ccCCCCc
Q 006388 472 ELDPYNP 478 (647)
Q Consensus 472 ~~~p~~~ 478 (647)
+..|+++
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 7777644
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.33 E-value=1.1e-11 Score=127.73 Aligned_cols=267 Identities=13% Similarity=0.003 Sum_probs=166.3
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHcCCCCch----hHHHHHHHHHHhcCCHHHHHHHHhcCCCC---------ChhHH
Q 006388 177 FGSVLTACGGLLALEEGKQIHAFIIRNDHKDNV----FVGSALVDMYCKCKSIKYAESVFRTMAWK---------NVVSW 243 (647)
Q Consensus 177 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~y~~~g~~~~A~~~~~~~~~~---------~~~~~ 243 (647)
+..+...+...|++++|...++.+++.... +. .++..+...|...|++++|...|++.... ...+|
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 334444556667777777777766665322 22 34555666666666666666666554311 22345
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhC-CCcchhHHHHHHHHHHh
Q 006388 244 TAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTG-LISFITVSNALVTFYGK 322 (647)
Q Consensus 244 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~ 322 (647)
..+...|...|++++|+..|++..... .+.+ .+....++..+...|..
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLA-------------------------------RQLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhhchHHHHHHHHHHHHHHHH
Confidence 555556666666666666655544320 0000 01123344455555555
Q ss_pred cCC-----------------HHHHHHHHhhcC-------CC--ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC
Q 006388 323 CGN-----------------IEDSHRLFNEMN-------VR--DEVSWTALVSGYAKFGKANETIDLFEKMLSHGL-KPD 375 (647)
Q Consensus 323 ~g~-----------------~~~A~~~~~~~~-------~~--d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~ 375 (647)
.|+ +++|.+.+++.. .+ ...+|..+...|...|++++|+..|++..+... .++
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 555 555555555432 11 234677777788888888888888887765211 112
Q ss_pred ----HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCc----ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC---CCC
Q 006388 376 ----EVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRP----IHDHYTCMIDILSRAGRLEEAKSFINKM-PF---PPD 443 (647)
Q Consensus 376 ----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~---~p~ 443 (647)
..++..+...+...|++++|...++.......-.. ....+..+...|...|++++|.+.+++. .. .++
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 12667778888899999999999887765321111 2467888889999999999999998876 11 112
Q ss_pred ----hhhHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 006388 444 ----AIGWATLLSSCRIHGNVEIGKWAAESLLELDP 475 (647)
Q Consensus 444 ----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 475 (647)
..++..+...+...|++++|...+++++++.+
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 45778888899999999999999999888765
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.31 E-value=4.8e-12 Score=124.77 Aligned_cols=236 Identities=13% Similarity=0.137 Sum_probs=128.2
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh------CC
Q 006388 240 VVSWTAMLVGYGQNGCSEEAVKIFCNMQRN-------GIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVT------GL 306 (647)
Q Consensus 240 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------~~ 306 (647)
..+|..+...+...|++++|+.+|+++.+. ........+..+...+...|++++|...+..+.+. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 457888888889999999999998888762 11122344555556666666666666666655543 11
Q ss_pred -CcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHH
Q 006388 307 -ISFITVSNALVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFGKANETIDLFEKMLSH------GLKPD-EVT 378 (647)
Q Consensus 307 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t 378 (647)
+....+ |..+...|...|++++|+..|++..+. +-.|+ ...
T Consensus 107 ~~~~~~~-------------------------------~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 107 HPAVAAT-------------------------------LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp CHHHHHH-------------------------------HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ChHHHHH-------------------------------HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 112333 444444444455555555555444432 11222 224
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhc-----C-CCcChHHHHHHHHHHHHcCCHHHHHHHHHhCC----------CCC
Q 006388 379 LIGVLSACSRAGLVEKGRHYFEIMVKEY-----G-IRPIHDHYTCMIDILSRAGRLEEAKSFINKMP----------FPP 442 (647)
Q Consensus 379 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----------~~p 442 (647)
+..+...+...|++++|..+++.+.+.. + .+.....+..+...|.+.|++++|.+.++++- ..+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 5555556666666666666666654421 1 11123456666666677777777766665541 111
Q ss_pred C-hhh------HHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 443 D-AIG------WATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 443 ~-~~~------~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
. ... +..+...+...+.+.++...++.+....|..+.++..++.+|...|++++|.+++++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 111 222222333445566666677777777777788888888999999999999888887754
No 68
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.31 E-value=2.3e-11 Score=132.74 Aligned_cols=162 Identities=18% Similarity=0.248 Sum_probs=126.1
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCc-ChHHHHH
Q 006388 340 DEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPD-EVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRP-IHDHYTC 417 (647)
Q Consensus 340 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 417 (647)
+..+|+.|...|.+.|++++|++.|++.++. .|+ ...+..+..++.+.|++++|++.|++.++. .| +...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 3456777777777777777788777777763 455 347777777788888888888888877653 33 4577888
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChh
Q 006388 418 MIDILSRAGRLEEAKSFINKM-PFPPD-AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWD 495 (647)
Q Consensus 418 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 495 (647)
+..+|.+.|++++|++.|++. .+.|+ ...|..+...+...|++++|+..++++++++|+++.++..|+.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 888888888888888888776 44554 7788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHh
Q 006388 496 HVSQLRRTMRE 506 (647)
Q Consensus 496 ~a~~~~~~m~~ 506 (647)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888877653
No 69
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.31 E-value=4.1e-11 Score=119.25 Aligned_cols=133 Identities=15% Similarity=0.043 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcC----hH
Q 006388 343 SWTALVSGYAKFGKANETIDLFEKMLSHGL-KPD----EVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPI----HD 413 (647)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 413 (647)
.+..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|..+++...+...-.++ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 344444445555555555555554432100 011 114455555566666666666666655432111111 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 006388 414 HYTCMIDILSRAGRLEEAKSFINKM----PFPPD----AIGWATLLSSCRIHGNVEIGKWAAESLLELDP 475 (647)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 475 (647)
.+..+...|...|++++|.+.++++ +..++ ..++..+...+...|++++|...+++++++.+
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 5666777777777777777777665 10111 44677777888888888888888888887765
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.30 E-value=6.5e-11 Score=120.79 Aligned_cols=195 Identities=12% Similarity=0.037 Sum_probs=119.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcC-----CC-----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCH---
Q 006388 311 TVSNALVTFYGKCGNIEDSHRLFNEMN-----VR-----DEVSWTALVSGYAKFGKANETIDLFEKMLSHGL-KPDE--- 376 (647)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~-----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--- 376 (647)
.++..+...|...|++++|...+++.. .+ ...+++.+...|...|++++|+..|++..+... .++.
T Consensus 144 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 223 (383)
T 3ulq_A 144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLM 223 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHH
Confidence 344455555555555555555554432 01 123566666677777777777777766654210 1111
Q ss_pred -HHHHHHHHHHhcCCcHHHHHHHHHHHHHh---cCC-CcChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-----CCCC-h
Q 006388 377 -VTLIGVLSACSRAGLVEKGRHYFEIMVKE---YGI-RPIHDHYTCMIDILSRAGRLEEAKSFINKM-P-----FPPD-A 444 (647)
Q Consensus 377 -~t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-----~~p~-~ 444 (647)
.++..+...+...|++++|...|+...+- .+. +....++..+...|.+.|++++|.+.+++. . ..|. .
T Consensus 224 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 303 (383)
T 3ulq_A 224 GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYL 303 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 25666677777777777777777766541 122 223466777777788888888888777765 1 1121 2
Q ss_pred hhHHHHHHHHHhcCC---hhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 445 IGWATLLSSCRIHGN---VEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 445 ~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
..+..+...+...|+ +++|...+++. ...|.....+..++.+|...|++++|.+.+++..+
T Consensus 304 ~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 304 SEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 234556666667777 66666666655 22333455777888888888888888888888764
No 71
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.28 E-value=9.4e-09 Score=110.87 Aligned_cols=430 Identities=11% Similarity=0.039 Sum_probs=265.8
Q ss_pred CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCC---hHHHHHHHHHHHHhCC-CCchhh
Q 006388 4 HDGVSWNLLISGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRC---VDLGRQIHGHILKFGF-GSYVFV 79 (647)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~g~-~~~~~~ 79 (647)
.|..+|..++..+.+.+.++.+..+|+++...- |.+...|..-+..-.+.++ .+.+..+|++.+.... +|++..
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 467789999999999999999999999999874 7777888888888888888 9999999999988652 478888
Q ss_pred HHHHHHHHHhcCCh--------HHHHHHhccCC------CC-CchHHHHHHHHHH---------hcCChHHHHHHhhcCC
Q 006388 80 GSPLVDMYAKLGLI--------YDAKRGFDELP------EK-NIVMYNTMITGLL---------RRGLVEESRRLFRGMK 135 (647)
Q Consensus 80 ~~~li~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~ 135 (647)
|...+....+.++. +..+++|+... ++ ....|...+.-.. ..++++.+.++|+...
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 88887776665554 33447777532 23 3357877776543 3456788999999877
Q ss_pred CCCe----ehHHHHHHHHHh-C------------CChhHHHHHHHHHHH--CCCC---CCh-hhHHHHHHHHhcCC-ChH
Q 006388 136 DKDS----ISWTTMITGLMQ-N------------GLEREAIDLFREMRL--EGLA---MDQ-FTFGSVLTACGGLL-ALE 191 (647)
Q Consensus 136 ~~~~----~~~~~li~~~~~-~------------g~~~~A~~~~~~m~~--~g~~---pd~-~t~~~ll~~~~~~~-~~~ 191 (647)
.-.. ..|......--. + ..++.|...+.++.. .++. |.. .+.. ....-..+ ...
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~--~~~~p~~~~~~~ 299 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT--ESNLPKPNEYDV 299 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC--TTTSCCTTCCCH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccch--hccCCCCchhHH
Confidence 5211 122221111100 0 112223333333221 1110 000 0000 00000000 000
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC-------CHHHHHHHHhcCC---CCChhHHHHHHHHHHhcCChhHHH-
Q 006388 192 EGKQIHAFIIRNDHKDNVFVGSALVDMYCKCK-------SIKYAESVFRTMA---WKNVVSWTAMLVGYGQNGCSEEAV- 260 (647)
Q Consensus 192 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g-------~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~- 260 (647)
... ..|...+..--..+ ..+.+..+|++.. ..+...|-..+.-+...|+.++|.
T Consensus 300 ~ql---------------~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 300 QQL---------------LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp HHH---------------HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred HHH---------------HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 111 12222222221111 0122334444433 235667777777777788888886
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhC----------CCc-----------chhHHHHHHHH
Q 006388 261 KIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTG----------LIS-----------FITVSNALVTF 319 (647)
Q Consensus 261 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~----------~~~-----------~~~~~~~li~~ 319 (647)
++|++.... .+.+...+...+...-..|+++.|+.+++.+++.. .+. ...+|...++.
T Consensus 365 ~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 888888763 23344445556666677788888888888877641 111 23578888888
Q ss_pred HHhcCCHHHHHHHHhhcCCC-C---hhhHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHH
Q 006388 320 YGKCGNIEDSHRLFNEMNVR-D---EVSWTALVSGYAKF-GKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEK 394 (647)
Q Consensus 320 ~~~~g~~~~A~~~~~~~~~~-d---~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 394 (647)
..+.|.++.|.++|.+..+. . ...|-..+..-.+. ++.+.|..+|+...+. ..-+...+...+......|+.+.
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~ 522 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQ 522 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHH
Confidence 88899999999999987633 2 23333222222233 4589999999998885 23344455677777777899999
Q ss_pred HHHHHHHHHHhcCCCc---ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCChhhHHHHHHHHHh
Q 006388 395 GRHYFEIMVKEYGIRP---IHDHYTCMIDILSRAGRLEEAKSFINKM-PFPPDAIGWATLLSSCRI 456 (647)
Q Consensus 395 a~~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~ 456 (647)
|+.+|+..+.. .++ ....|...++.-.+.|+.+.+.++.+++ ...|+......+..-|..
T Consensus 523 AR~lferal~~--~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f~~ry~~ 586 (679)
T 4e6h_A 523 VKSLFESSIDK--ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTNKYKV 586 (679)
T ss_dssp HHHHHHHHTTT--SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHHHHHTCB
T ss_pred HHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHhcC
Confidence 99999988753 221 3478888999889999999999999998 233554455555555543
No 72
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.28 E-value=7.3e-10 Score=109.15 Aligned_cols=245 Identities=11% Similarity=0.051 Sum_probs=157.8
Q ss_pred HHHHHHHhcCCC---CChhHHHHHHHHHH-------hcCCh-------hHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc
Q 006388 226 KYAESVFRTMAW---KNVVSWTAMLVGYG-------QNGCS-------EEAVKIFCNMQRNGIEPD-DFTLGSVISSCAN 287 (647)
Q Consensus 226 ~~A~~~~~~~~~---~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~ 287 (647)
++|..+|++... .++..|..++..+. +.|+. ++|..+|++.... +.|+ ...|..+...+..
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHh
Confidence 345555554432 34555665555554 24664 6777777777652 2343 3456666666677
Q ss_pred cCChHHHHHHHHHHHHhCCCcchh-HHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHH-HcCChHHHHH
Q 006388 288 LASLEEGTQFHGRSLVTGLISFIT-VSNALVTFYGKCGNIEDSHRLFNEMNVR---DEVSWTALVSGYA-KFGKANETID 362 (647)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~---d~~~~~~li~~~~-~~g~~~~A~~ 362 (647)
.|++++|..+++.+++.. +.+.. ++..++..+.+.|++++|.++|++.... +...|........ ..|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 777777777777777642 11232 6777888888888888888888876532 3334433322222 2699999999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCc--ChHHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 006388 363 LFEKMLSHGLKP-DEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRP--IHDHYTCMIDILSRAGRLEEAKSFINKM- 438 (647)
Q Consensus 363 ~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~- 438 (647)
+|++..+. .| +...+..++..+.+.|++++|+.+|+.......++| ....|..++..+.+.|+.++|..+++++
T Consensus 191 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99998874 34 455788888888999999999999999987433455 3578888899999999999999999887
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHH
Q 006388 439 PFPPDAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLS 485 (647)
Q Consensus 439 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 485 (647)
...|+......+ ..+ ....+++.+.|+++..++.|+
T Consensus 269 ~~~p~~~~~~~~-~~~----------~~r~~~l~~~P~~~~~ln~lg 304 (308)
T 2ond_A 269 TAFREEYEGKET-ALL----------VDRYKFMDLYPCSASELKALG 304 (308)
T ss_dssp HHTTTTTSSCHH-HHH----------HTTTCBTTBCSSCHHHHHTTT
T ss_pred HHcccccccchH-HHH----------HHHHHhcccCCCCHHHHHhcC
Confidence 223331100000 111 001145668898887777654
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.27 E-value=1.3e-11 Score=121.59 Aligned_cols=239 Identities=12% Similarity=0.075 Sum_probs=147.4
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--------C---ChhHHHHHHHHHHhcCChhHHHHHHHHHHHC------
Q 006388 207 DNVFVGSALVDMYCKCKSIKYAESVFRTMAW--------K---NVVSWTAMLVGYGQNGCSEEAVKIFCNMQRN------ 269 (647)
Q Consensus 207 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------ 269 (647)
.+..++..+...|...|++++|..+|+++.. . ...++..+...|...|++++|+..|++....
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 3456788899999999999999999988764 2 2457888999999999999999999998764
Q ss_pred CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHh------CC-CcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh
Q 006388 270 GIEP-DDFTLGSVISSCANLASLEEGTQFHGRSLVT------GL-ISFITVSNALVTFYGKCGNIEDSHRLFNEMNVRDE 341 (647)
Q Consensus 270 g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~ 341 (647)
+-.| ...++..+...+...|++++|...+..+.+. +. +....++..+...|...|++++|.+.|++
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~------ 178 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR------ 178 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH------
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH------
Confidence 2223 3456777888888999999999999887764 11 12334455555555555665555555544
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHhc------CC
Q 006388 342 VSWTALVSGYAKFGKANETIDLFEKMLSH------GLKPDE-VTLIGVLSACSRAGLVEKGRHYFEIMVKEY------GI 408 (647)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~ 408 (647)
+.+. +-.|+. .++..+...+...|++++|..+++.+.+.. ..
T Consensus 179 -------------------------a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 233 (311)
T 3nf1_A 179 -------------------------ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSV 233 (311)
T ss_dssp -------------------------HHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred -------------------------HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3321 111211 134444444555555555555555444310 00
Q ss_pred Cc-------ChHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 006388 409 RP-------IHDHYTCMIDILSRAGRLEEAKSFINKMP-FPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPY 476 (647)
Q Consensus 409 ~p-------~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 476 (647)
.+ ....+..+...+...+.+.+|...++... ..| +..+|..+...|...|++++|...+++++++.|.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 234 DDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ----CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11 11223333344455566666666666663 334 3678889999999999999999999999887764
No 74
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.27 E-value=1.4e-10 Score=118.29 Aligned_cols=229 Identities=9% Similarity=0.015 Sum_probs=159.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHhC--C----CcchhHHH
Q 006388 246 MLVGYGQNGCSEEAVKIFCNMQRNG-IEPD----DFTLGSVISSCANLASLEEGTQFHGRSLVTG--L----ISFITVSN 314 (647)
Q Consensus 246 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 314 (647)
....+...|++++|+..|++....- -.+| ..++..+...+...|+++.|...+....+.. . +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 3444556666666666666665421 0111 2345555556666666666666666655431 1 11234667
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHH
Q 006388 315 ALVTFYGKCGNIEDSHRLFNEMNV-----RD----EVSWTALVSGYAKFGKANETIDLFEKMLSH----GLKPD-EVTLI 380 (647)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~~~~-----~d----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~ 380 (647)
.+...|...|++++|.+.|++... ++ ..+|..+...|...|++++|+..|++..+. +..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 777888888888888888776541 11 246788888999999999999999888762 33244 44788
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhc---CCCcChHHHHHHHHHHHHcCC---HHHHHHHHHhCCCCCC-hhhHHHHHHH
Q 006388 381 GVLSACSRAGLVEKGRHYFEIMVKEY---GIRPIHDHYTCMIDILSRAGR---LEEAKSFINKMPFPPD-AIGWATLLSS 453 (647)
Q Consensus 381 ~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~ll~~ 453 (647)
.+...+...|++++|...++...+.. +.+.....+..+...|...|+ +++|..++++.+..|+ ...+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 88889999999999999998876532 122223446778888889998 9999999999865554 5577788899
Q ss_pred HHhcCChhHHHHHHHHHhccC
Q 006388 454 CRIHGNVEIGKWAAESLLELD 474 (647)
Q Consensus 454 ~~~~~~~~~a~~~~~~~~~~~ 474 (647)
|...|++++|...+++++++.
T Consensus 349 y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988754
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.25 E-value=1.8e-10 Score=103.51 Aligned_cols=160 Identities=14% Similarity=0.077 Sum_probs=98.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHH
Q 006388 345 TALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSR 424 (647)
Q Consensus 345 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 424 (647)
..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...+..
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHH
Confidence 333444444444444444444443321 123334444455555555555555555555442 12234555666666666
Q ss_pred cCCHHHHHHHHHhC-C-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHH
Q 006388 425 AGRLEEAKSFINKM-P-FPPDAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRR 502 (647)
Q Consensus 425 ~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 502 (647)
.|++++|.+.++++ . .+.+...|..+...+...|++++|...++++++..|.++..+..++.+|...|++++|.+.++
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666666655 1 223466777777777788888888888888888888888888888888888888888888888
Q ss_pred HHHhC
Q 006388 503 TMREK 507 (647)
Q Consensus 503 ~m~~~ 507 (647)
+..+.
T Consensus 169 ~~~~~ 173 (186)
T 3as5_A 169 KANEL 173 (186)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 77653
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.23 E-value=7.4e-10 Score=103.75 Aligned_cols=204 Identities=10% Similarity=0.060 Sum_probs=135.4
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHH
Q 006388 273 PDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMN---VRDEVSWTALVS 349 (647)
Q Consensus 273 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~ 349 (647)
.|...+......+...|++++|...+...++...+++...+..+...|...|++++|.+.|++.. ..+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 34566667777777888888888888888777643555666667778888888888888887765 224566777777
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcC---hHHHHHH
Q 006388 350 GYAKFGKANETIDLFEKMLSHGLKPD-E-------VTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPI---HDHYTCM 418 (647)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 418 (647)
.|...|++++|+..|++..+. .|+ . ..+..+...+...|++++|...|+...+ +.|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 888888888888888887764 343 2 3455566667777888888888877753 3454 4566666
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhh
Q 006388 419 IDILSRAGRLEEAKSFINKM-PF-PPDAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIY 488 (647)
Q Consensus 419 i~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 488 (647)
...|...|+. +++++ .. ..+...+..+. ....+.+++|...++++++++|+++.+...+..+.
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 6666655433 22222 01 11233332222 23445678899999999999998887777666554
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.22 E-value=5.2e-09 Score=106.10 Aligned_cols=258 Identities=10% Similarity=0.022 Sum_probs=159.1
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCChHHHHHHHHHHHHhCC---Cc--chhHHHHHHHH
Q 006388 249 GYGQNGCSEEAVKIFCNMQRNGIEPDDF----TLGSVISSCANLASLEEGTQFHGRSLVTGL---IS--FITVSNALVTF 319 (647)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~li~~ 319 (647)
.+...|++++|...+++.....-..+.. .+..+...+...|+++.|...+....+..- .+ ...+...+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3444555555555555554432111111 233333444455566666555555443210 00 12234556666
Q ss_pred HHhcCCHHHHHHHHhhcC-------C---C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--CHHHHHHHHH
Q 006388 320 YGKCGNIEDSHRLFNEMN-------V---R-DEVSWTALVSGYAKFGKANETIDLFEKMLSHGLK--P--DEVTLIGVLS 384 (647)
Q Consensus 320 ~~~~g~~~~A~~~~~~~~-------~---~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ll~ 384 (647)
+...|++++|...+++.. . + ....+..+...+...|++++|...+++....... | ...++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 777777777777776543 1 1 1234556677788888888888888887653211 1 1245666777
Q ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCcChHHHH-----HHHHHHHHcCCHHHHHHHHHhCC-CCCC-----hhhHHHHHHH
Q 006388 385 ACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYT-----CMIDILSRAGRLEEAKSFINKMP-FPPD-----AIGWATLLSS 453 (647)
Q Consensus 385 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~ll~~ 453 (647)
.+...|++++|...++.......-......+. ..+..+...|++++|...+++.. ..|. ...+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 78888999999988888765322111111111 23345778999999999998872 2221 2246677788
Q ss_pred HHhcCChhHHHHHHHHHhccCCC-----C-chhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 454 CRIHGNVEIGKWAAESLLELDPY-----N-PASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 454 ~~~~~~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
+...|++++|...++++.+..+. + ...+..++.+|...|+.++|...+++..+
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88899999999999988765332 1 23677888999999999999999988764
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.21 E-value=5.5e-10 Score=104.62 Aligned_cols=188 Identities=12% Similarity=-0.033 Sum_probs=87.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcC---C-CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 006388 310 ITVSNALVTFYGKCGNIEDSHRLFNEMN---V-RDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDE-VTLIGVLS 384 (647)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~-~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~ 384 (647)
+..+..+...|...|++++|.+.|++.. . ++...|..+..++...|++++|+..|++..+. .|+. ..+..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHH
Confidence 3444445555555555555555555443 1 34444444555555555555555555555542 3332 24444445
Q ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCcCh-----HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---hhhHHHHHHHHH
Q 006388 385 ACSRAGLVEKGRHYFEIMVKEYGIRPIH-----DHYTCMIDILSRAGRLEEAKSFINKM-PFPPD---AIGWATLLSSCR 455 (647)
Q Consensus 385 a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~ 455 (647)
++...|++++|...|+...+...-.+.. ..|..+...+.+.|++++|.+.++++ ...|+ ...|..+...+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 5555555555555555554421111111 23444444455555555555555444 33333 233444444432
Q ss_pred hcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 456 IHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 456 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
. .+...++++..+.+.++..|..+ .....|.+++|...+++..+
T Consensus 165 ~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 165 N-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp H-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhh
Confidence 2 22333344444444333333222 12233445778888777765
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.19 E-value=8.1e-10 Score=99.23 Aligned_cols=169 Identities=14% Similarity=0.020 Sum_probs=143.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006388 310 ITVSNALVTFYGKCGNIEDSHRLFNEMNV---RDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSAC 386 (647)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 386 (647)
...+..+...+...|++++|.+.|+++.. .+...|..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34566778889999999999999999873 367788899999999999999999999998752 33566888888899
Q ss_pred hcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHH
Q 006388 387 SRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGK 464 (647)
Q Consensus 387 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~ 464 (647)
...|++++|.++++.+.+. .+.+...+..+...+...|++++|.+.++++ ...| +...|..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999864 3456788899999999999999999999887 2233 5788999999999999999999
Q ss_pred HHHHHHhccCCCCchhH
Q 006388 465 WAAESLLELDPYNPASY 481 (647)
Q Consensus 465 ~~~~~~~~~~p~~~~~~ 481 (647)
..++++++..|+++...
T Consensus 165 ~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 165 PHFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHcCCCchhhH
Confidence 99999999988766443
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.19 E-value=7.1e-10 Score=112.78 Aligned_cols=221 Identities=12% Similarity=0.036 Sum_probs=139.1
Q ss_pred HhccCChHHHHHHHHHHHHhC--CC---cchhHHHHHHHHHHhcCCHHHHHHHHhhcC-----CC-----ChhhHHHHHH
Q 006388 285 CANLASLEEGTQFHGRSLVTG--LI---SFITVSNALVTFYGKCGNIEDSHRLFNEMN-----VR-----DEVSWTALVS 349 (647)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~-----d~~~~~~li~ 349 (647)
+...|++++|...+..+.+.. .. ....++..+...|...|+++.|...+++.. .+ ...+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 344556666666655554431 01 123455566666777777666666665543 11 1345667777
Q ss_pred HHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc---CCCcChHHHHHHHHH
Q 006388 350 GYAKFGKANETIDLFEKMLSH----GLKPD-EVTLIGVLSACSRAGLVEKGRHYFEIMVKEY---GIRPIHDHYTCMIDI 421 (647)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li~~ 421 (647)
.|...|++++|++.|++..+. +-.+. ..++..+...+...|++++|...|+...+-. +.+....++..+...
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 788888888888887776542 11111 2356667777888888888888888776511 222235677788888
Q ss_pred HHHcCCHHHHHHHHHhC----CC--CCC-hhhHHHHHHHHHhcCC---hhHHHHHHHHHhccCCCCchhHHHHHHhhhhC
Q 006388 422 LSRAGRLEEAKSFINKM----PF--PPD-AIGWATLLSSCRIHGN---VEIGKWAAESLLELDPYNPASYVLLSSIYASK 491 (647)
Q Consensus 422 ~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 491 (647)
|.+.|++++|.+.+++. +. .|. ...+..+...+...++ +.+|...+++. ...|.....+..++..|...
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~ 349 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESS 349 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHC
Confidence 88888888888888776 11 222 3344555555566667 66666666652 22233445677889999999
Q ss_pred CChhHHHHHHHHHHh
Q 006388 492 GKWDHVSQLRRTMRE 506 (647)
Q Consensus 492 g~~~~a~~~~~~m~~ 506 (647)
|++++|.+.+++..+
T Consensus 350 g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 350 CHFEQAAAFYRKVLK 364 (378)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999887754
No 81
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.15 E-value=3.5e-10 Score=118.57 Aligned_cols=211 Identities=11% Similarity=-0.063 Sum_probs=123.3
Q ss_pred hHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCCh-HHHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHhc
Q 006388 23 NDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCV-DLGRQIHGHILKFGFGSYVFVGSPLVDMYAKLGLIYDAKRGFD 101 (647)
Q Consensus 23 ~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 101 (647)
++++..++...... +.+...+..+...+...|++ ++|...++++++.. +.+...+..+...|.+.|++++|...|+
T Consensus 85 ~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 85 EKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33444444443332 33444555555555555555 55555555555544 2334455555555555555555555554
Q ss_pred cCCCCCchHHHHHHHHHHhcCChHHHHHHhhcCCCCCeehHHHHHHHHHhC---------CChhHHHHHHHHHHHCCCCC
Q 006388 102 ELPEKNIVMYNTMITGLLRRGLVEESRRLFRGMKDKDSISWTTMITGLMQN---------GLEREAIDLFREMRLEGLAM 172 (647)
Q Consensus 102 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p 172 (647)
+..+. .|+...|..+...|... |++++|++.|++..+... -
T Consensus 162 ~al~~-----------------------------~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~ 211 (474)
T 4abn_A 162 GALTH-----------------------------CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-L 211 (474)
T ss_dssp HHHTT-----------------------------CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-T
T ss_pred HHHhh-----------------------------CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-C
Confidence 44321 13345555566666666 677777777777665421 1
Q ss_pred ChhhHHHHHHHHhcC--------CChHHHHHHHHHHHHcCCC--CchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCC
Q 006388 173 DQFTFGSVLTACGGL--------LALEEGKQIHAFIIRNDHK--DNVFVGSALVDMYCKCKSIKYAESVFRTMA---WKN 239 (647)
Q Consensus 173 d~~t~~~ll~~~~~~--------~~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~ 239 (647)
+...+..+..++... |++++|.+.++.+++.... .+...+..+..+|.+.|++++|...|++.. ..+
T Consensus 212 ~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 291 (474)
T 4abn_A 212 DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW 291 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 344566666666665 6677777777777765311 466677777777777777777777777654 235
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHH
Q 006388 240 VVSWTAMLVGYGQNGCSEEAVKIFCNM 266 (647)
Q Consensus 240 ~~~~~~li~~~~~~g~~~~A~~~~~~m 266 (647)
..+|..+...+...|++++|++.+.++
T Consensus 292 ~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 292 PEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 566777777777777777777665443
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.11 E-value=1.4e-08 Score=103.14 Aligned_cols=227 Identities=10% Similarity=0.029 Sum_probs=155.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHhC--C---C-cchhHHH
Q 006388 246 MLVGYGQNGCSEEAVKIFCNMQRNGI-EPD----DFTLGSVISSCANLASLEEGTQFHGRSLVTG--L---I-SFITVSN 314 (647)
Q Consensus 246 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~--~---~-~~~~~~~ 314 (647)
....+...|++++|+..|++....-. .++ ..++..+..++...|+++.|...+....+.. . . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34445566777777777766654310 122 2345555666666777777777666665431 0 1 1244566
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHH
Q 006388 315 ALVTFYGKCGNIEDSHRLFNEMNV-----RD----EVSWTALVSGYAKFGKANETIDLFEKMLS-----HGLKPDEVTLI 380 (647)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~~~~-----~d----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~ 380 (647)
.+...|...|++++|.+.|++... ++ ..+++.+...|...|++++|+..|++..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 777788888888888877776541 12 34677788888889999999999888876 32 22245777
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhcCC---CcChHHHHHHHHHHHHcCC---HHHHHHHHHhCCCCCC-hhhHHHHHHH
Q 006388 381 GVLSACSRAGLVEKGRHYFEIMVKEYGI---RPIHDHYTCMIDILSRAGR---LEEAKSFINKMPFPPD-AIGWATLLSS 453 (647)
Q Consensus 381 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~ll~~ 453 (647)
.+...+.+.|++++|..+++...+...- +.....+..+...|...|+ +++|..++++.+..|+ ...+..+...
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 8888899999999999999988764322 2223456677777778888 8999999998754444 4566778888
Q ss_pred HHhcCChhHHHHHHHHHhcc
Q 006388 454 CRIHGNVEIGKWAAESLLEL 473 (647)
Q Consensus 454 ~~~~~~~~~a~~~~~~~~~~ 473 (647)
|...|++++|...++++++.
T Consensus 346 y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999887654
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.11 E-value=8.6e-10 Score=106.65 Aligned_cols=197 Identities=16% Similarity=0.208 Sum_probs=120.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC-------C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC------CC
Q 006388 310 ITVSNALVTFYGKCGNIEDSHRLFNEMNV-------R----DEVSWTALVSGYAKFGKANETIDLFEKMLSH------GL 372 (647)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 372 (647)
..++..+...|...|++++|...|++... + ...+|..+...|...|++++|+..|++.... .-
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 44455555555566666665555554430 1 2345666666777777777777777766543 11
Q ss_pred CCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc-----C-CCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-------
Q 006388 373 KPD-EVTLIGVLSACSRAGLVEKGRHYFEIMVKEY-----G-IRPIHDHYTCMIDILSRAGRLEEAKSFINKM------- 438 (647)
Q Consensus 373 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~------- 438 (647)
.|+ ..++..+...+...|++++|..+++.+.+.. + .+.....+..+...|.+.|++++|.++++++
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 232 3467777778888888888888888776531 1 1223467778888888889988888888765
Q ss_pred ---CCCCC-hhhHHHHHHHHHhcCCh------hHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 439 ---PFPPD-AIGWATLLSSCRIHGNV------EIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 439 ---~~~p~-~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
...+. ...|..+.......+.. ..+...++......|..+.++..++.+|...|++++|.+++++..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12233 33444444444433332 2233333333333455667889999999999999999999998765
No 84
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.08 E-value=5e-08 Score=98.77 Aligned_cols=158 Identities=9% Similarity=-0.131 Sum_probs=74.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChh----hHHHHHHHHhcCCChHHHHHHHHHHHHcCCC-Cc----hhHHHHH
Q 006388 145 MITGLMQNGLEREAIDLFREMRLEGLAMDQF----TFGSVLTACGGLLALEEGKQIHAFIIRNDHK-DN----VFVGSAL 215 (647)
Q Consensus 145 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~l 215 (647)
+...+...|++++|...+++........+.. .+..+...+...|+++.|.+.+...++.... .+ ..+...+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3344556777777777777766543211211 2333344455566666666666555442110 11 1123445
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC-------C----ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--C--CHHHHHH
Q 006388 216 VDMYCKCKSIKYAESVFRTMAW-------K----NVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIE--P--DDFTLGS 280 (647)
Q Consensus 216 i~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ 280 (647)
...|...|++++|...+++... + ...++..+...+...|++++|...+++....... + ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 5555556666665555544321 0 1123444555555556666666665555432111 1 1123333
Q ss_pred HHHHHhccCChHHHHHHHHHHH
Q 006388 281 VISSCANLASLEEGTQFHGRSL 302 (647)
Q Consensus 281 ll~a~~~~~~~~~a~~~~~~~~ 302 (647)
+...+...|++++|...++...
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444555555555554443
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.06 E-value=1.4e-09 Score=118.80 Aligned_cols=165 Identities=15% Similarity=0.156 Sum_probs=138.0
Q ss_pred CcchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 006388 307 ISFITVSNALVTFYGKCGNIEDSHRLFNEMN---VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPD-EVTLIGV 382 (647)
Q Consensus 307 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l 382 (647)
+.+...++.|...|.+.|++++|.+.|++.. ..+..+|+.+..+|.+.|++++|+..|++.++. .|+ ...+..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 3456778888888889999999998888765 346778999999999999999999999998884 565 4588888
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCCh
Q 006388 383 LSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPPD-AIGWATLLSSCRIHGNV 460 (647)
Q Consensus 383 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~ 460 (647)
..++...|++++|++.|++.++. -+-+...|..+..+|.+.|++++|++.|++. ...|+ ...|..|...+...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 89999999999999999988764 1235688999999999999999999999887 55565 78899999999999999
Q ss_pred hHHHHHHHHHhccCC
Q 006388 461 EIGKWAAESLLELDP 475 (647)
Q Consensus 461 ~~a~~~~~~~~~~~p 475 (647)
++|.+.+++++++.|
T Consensus 162 ~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 162 TDYDERMKKLVSIVA 176 (723)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh
Confidence 999999999887654
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.00 E-value=1.9e-08 Score=96.23 Aligned_cols=204 Identities=11% Similarity=0.053 Sum_probs=117.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-C---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-HHHHHH
Q 006388 310 ITVSNALVTFYGKCGNIEDSHRLFNEMNV--R-D---EVSWTALVSGYAKFGKANETIDLFEKMLSHGL-KPD-EVTLIG 381 (647)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-d---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~~ 381 (647)
...+-.+...+.+.|++++|...|+++.. | + ...|..+..+|.+.|++++|+..|++..+... .|. ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 34444455555566666666666665542 1 2 33455555555666666666666666555311 111 123344
Q ss_pred HHHHHhc--------CCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhhHHHHHHH
Q 006388 382 VLSACSR--------AGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKMPFPPDAIGWATLLSS 453 (647)
Q Consensus 382 ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~ 453 (647)
+..++.. .|++++|...|+.+++.+.-.+ .....+.......+.+ ...+..+...
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~a~~~~~~~~~~~---------------~~~~~~la~~ 157 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE--LVDDATQKIRELRAKL---------------ARKQYEAARL 157 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT--THHHHHHHHHHHHHHH---------------HHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch--hHHHHHHHHHHHHHHH---------------HHHHHHHHHH
Confidence 4444444 5555555555555554321111 1111111100000000 1113567788
Q ss_pred HHhcCChhHHHHHHHHHhccCCCC---chhHHHHHHhhhhC----------CChhHHHHHHHHHHhCCCccCCCcceEeE
Q 006388 454 CRIHGNVEIGKWAAESLLELDPYN---PASYVLLSSIYASK----------GKWDHVSQLRRTMREKGVRKDPGCSWIKY 520 (647)
Q Consensus 454 ~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~g~~~~~~~s~~~~ 520 (647)
+...|++++|+..++++++..|++ +..+..++.+|... |++++|...++++.+.. |
T Consensus 158 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~----p------- 226 (261)
T 3qky_A 158 YERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF----P------- 226 (261)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC----T-------
T ss_pred HHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC----C-------
Confidence 999999999999999999999984 45788999999876 99999999999987742 2
Q ss_pred cCeEEEEEecCCCCcchHHHHHHHHHHHHhhHh
Q 006388 521 KSRVHIFSADDWSSPYSDQIYAELEKLNRKMIK 553 (647)
Q Consensus 521 ~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~ 553 (647)
.+|...+....+.++...+.+
T Consensus 227 ------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 ------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred ------------CChHHHHHHHHHHHHHHHHHH
Confidence 244455555666666666544
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.99 E-value=7.6e-09 Score=100.90 Aligned_cols=217 Identities=10% Similarity=-0.010 Sum_probs=113.7
Q ss_pred CHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCChHHHHHHH
Q 006388 224 SIKYAESVFRTMAWKNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRN----GIEPD-DFTLGSVISSCANLASLEEGTQFH 298 (647)
Q Consensus 224 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~ 298 (647)
++++|...|++. ...|...|++++|+..|.+.... |-.++ ..+|..+..++...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 477777766553 66777788888888887766442 21111 234444444555555555555544
Q ss_pred HHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHc-CChHHHHHHHHHHHHCCCC-CC-
Q 006388 299 GRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKF-GKANETIDLFEKMLSHGLK-PD- 375 (647)
Q Consensus 299 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~-p~- 375 (647)
...++. +...|+...+ ..+|+.+...|... |++++|+..|++..+.... .+
T Consensus 101 ~~Al~l---------------~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 101 ENAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHH---------------HHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 444331 1111221111 22455566666664 7777777766666542100 01
Q ss_pred ---HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcCh-----HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCChh-
Q 006388 376 ---EVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIH-----DHYTCMIDILSRAGRLEEAKSFINKM-PFPPDAI- 445 (647)
Q Consensus 376 ---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~- 445 (647)
..++..+...+...|++++|...|+...+...-.+.. ..|..+..++...|++++|...+++. .+.|+..
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 2345566666667777777777777666431111111 14555666666777777777777665 3334311
Q ss_pred -----hHHHHHHHHH--hcCChhHHHHHHHHHhccCCCC
Q 006388 446 -----GWATLLSSCR--IHGNVEIGKWAAESLLELDPYN 477 (647)
Q Consensus 446 -----~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~p~~ 477 (647)
.+..++.++. ..+++++|...++++.+++|.+
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 2333444443 2345666666666666666643
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.98 E-value=7.7e-08 Score=92.13 Aligned_cols=163 Identities=10% Similarity=0.051 Sum_probs=93.4
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCc-----ChH
Q 006388 340 DEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPD-EVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRP-----IHD 413 (647)
Q Consensus 340 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-----~~~ 413 (647)
+..++..+..++...|++++|++++.+.+..|..++ ...+...+..+.+.|+.+.|.+.++.|.+. .| +..
T Consensus 99 ~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~---~~d~~~~~d~ 175 (310)
T 3mv2_B 99 SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA---IEDTVSGDNE 175 (310)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CccccccchH
Confidence 334444555566666666666666666555432222 235555556666666666666666666532 34 233
Q ss_pred HHHHHHHH--HHHcC--CHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhcc----------CCCCc
Q 006388 414 HYTCMIDI--LSRAG--RLEEAKSFINKM-PFPPDAIGWATLLSSCRIHGNVEIGKWAAESLLEL----------DPYNP 478 (647)
Q Consensus 414 ~~~~li~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----------~p~~~ 478 (647)
+...|..+ ....| ++++|..+|+++ ...|+..+-..|++++...|++++|+..++.+.+. +|+++
T Consensus 176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~ 255 (310)
T 3mv2_B 176 MILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKP 255 (310)
T ss_dssp HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCH
Confidence 34444433 22223 667777777666 22344223333444666677777777777766654 36677
Q ss_pred hhHHHHHHhhhhCCChhHHHHHHHHHHhC
Q 006388 479 ASYVLLSSIYASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 479 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 507 (647)
.++..++..+...|+ +|.++++++.+.
T Consensus 256 ~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 256 TFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 777666666666676 677777777663
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.97 E-value=8.6e-09 Score=100.54 Aligned_cols=200 Identities=11% Similarity=0.036 Sum_probs=143.1
Q ss_pred ChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHHcCChHHH
Q 006388 290 SLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNV-----RD----EVSWTALVSGYAKFGKANET 360 (647)
Q Consensus 290 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~d----~~~~~~li~~~~~~g~~~~A 360 (647)
++++|...+... ...|...|++++|.+.|++... .+ ..+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 367777766554 4457778888888888876541 11 45788889999999999999
Q ss_pred HHHHHHHHHC----CCCCC-HHHHHHHHHHHhcC-CcHHHHHHHHHHHHHhcCCCcC----hHHHHHHHHHHHHcCCHHH
Q 006388 361 IDLFEKMLSH----GLKPD-EVTLIGVLSACSRA-GLVEKGRHYFEIMVKEYGIRPI----HDHYTCMIDILSRAGRLEE 430 (647)
Q Consensus 361 ~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~ 430 (647)
+..|++..+. |-.+. ..++..+...|... |++++|...|+...+-..-..+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999887653 21111 34778888899996 9999999999988764211111 3578889999999999999
Q ss_pred HHHHHHhC-CCCCC---h-----hhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchh-----HHHHHHhhh--hCCCh
Q 006388 431 AKSFINKM-PFPPD---A-----IGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPAS-----YVLLSSIYA--SKGKW 494 (647)
Q Consensus 431 A~~~~~~~-~~~p~---~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 494 (647)
|.+.+++. ...|+ . ..|..+..++...|++++|+..++++++++|..... +..++..|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999987 22332 1 156778888999999999999999999999975443 445666664 45778
Q ss_pred hHHHHHHHHH
Q 006388 495 DHVSQLRRTM 504 (647)
Q Consensus 495 ~~a~~~~~~m 504 (647)
++|.+.++++
T Consensus 257 ~~A~~~~~~~ 266 (292)
T 1qqe_A 257 SEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHhccC
Confidence 8888877653
No 90
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.96 E-value=5.2e-08 Score=90.83 Aligned_cols=180 Identities=10% Similarity=0.003 Sum_probs=108.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC--CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----HHHH
Q 006388 312 VSNALVTFYGKCGNIEDSHRLFNEMNV--RD----EVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEV----TLIG 381 (647)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~d----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ 381 (647)
.+..+...+.+.|++++|...|+++.. |+ ...+..+..+|.+.|++++|+..|++..+. .|+.. .+..
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHHH
Confidence 344455666777777777777776652 21 235666667777777777777777777663 23321 2222
Q ss_pred HHHHHhc------------------CCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC
Q 006388 382 VLSACSR------------------AGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKMPFPPD 443 (647)
Q Consensus 382 ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~ 443 (647)
+..++.. .|++++|...|+.+++.+.-.+ ..+.++..+ +.+....
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~--~a~~a~~~l----~~~~~~~----------- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ--YTTDATKRL----VFLKDRL----------- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCT--THHHHHHHH----HHHHHHH-----------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCCh--hHHHHHHHH----HHHHHHH-----------
Confidence 3333322 3445555555555543221111 111111000 0000000
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc---hhHHHHHHhhhhCCChhHHHHHHHHHHhCCCc
Q 006388 444 AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNP---ASYVLLSSIYASKGKWDHVSQLRRTMREKGVR 510 (647)
Q Consensus 444 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 510 (647)
......+...+...|++++|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00113456678899999999999999999999876 56899999999999999999999998876543
No 91
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.94 E-value=1.7e-08 Score=97.43 Aligned_cols=162 Identities=15% Similarity=0.140 Sum_probs=85.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC-------C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCC
Q 006388 312 VSNALVTFYGKCGNIEDSHRLFNEMNV-------R----DEVSWTALVSGYAKFGKANETIDLFEKMLSH------GLKP 374 (647)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p 374 (647)
++..+...|...|++++|.+.|++... + ...+|..+...|...|++++|+..|++..+. +-.|
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 344444444444444444444443320 1 1334555666666666666666666666543 1123
Q ss_pred C-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc------CCCcC-hHHHHHHHHHHHHc------CCHHHHHHHHHhCC-
Q 006388 375 D-EVTLIGVLSACSRAGLVEKGRHYFEIMVKEY------GIRPI-HDHYTCMIDILSRA------GRLEEAKSFINKMP- 439 (647)
Q Consensus 375 ~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p~-~~~~~~li~~~~~~------g~~~~A~~~~~~~~- 439 (647)
+ ..++..+...+...|++++|..+++...+.. ...+. ...+..+...+... ..+.++...++...
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 2 2356666677777777777777777665421 11121 22333333333322 23445555555553
Q ss_pred CCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 006388 440 FPPD-AIGWATLLSSCRIHGNVEIGKWAAESLLEL 473 (647)
Q Consensus 440 ~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 473 (647)
..|+ ..++..+...+...|++++|...++++++.
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2233 567888888999999999999999988765
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.93 E-value=3.9e-08 Score=94.06 Aligned_cols=202 Identities=10% Similarity=0.035 Sum_probs=143.6
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcc---hhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C----Chhh
Q 006388 273 PDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISF---ITVSNALVTFYGKCGNIEDSHRLFNEMNV--R----DEVS 343 (647)
Q Consensus 273 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----d~~~ 343 (647)
.+...+......+...|++++|...+..+++.. +.+ ...+..+..+|.+.|++++|...|++... | ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 345667777788889999999999999998874 223 66778899999999999999999998762 2 2346
Q ss_pred HHHHHHHHHH--------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHH
Q 006388 344 WTALVSGYAK--------FGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHY 415 (647)
Q Consensus 344 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 415 (647)
+..+..++.. .|++++|+..|++..+. .|+.... ..+...+...... ....+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~-------------~~a~~~~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELV-------------DDATQKIRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTH-------------HHHHHHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhH-------------HHHHHHHHHHHHH-----HHHHH
Confidence 7778888888 99999999999999885 4543211 1111111111111 11235
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCCC----hhhHHHHHHHHHhc----------CChhHHHHHHHHHhccCCCCchh
Q 006388 416 TCMIDILSRAGRLEEAKSFINKM-PFPPD----AIGWATLLSSCRIH----------GNVEIGKWAAESLLELDPYNPAS 480 (647)
Q Consensus 416 ~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~ 480 (647)
..+...|.+.|++++|...|+++ ...|+ ...+..+..++... |++++|+..++++++..|+++..
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 56778888999999999998877 22233 45677777777765 88999999999999999987543
Q ss_pred ---HHHHHHhhhhCCChh
Q 006388 481 ---YVLLSSIYASKGKWD 495 (647)
Q Consensus 481 ---~~~l~~~~~~~g~~~ 495 (647)
...+..++...|+++
T Consensus 232 ~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 232 RTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 344444444444443
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.93 E-value=1.8e-08 Score=84.85 Aligned_cols=122 Identities=18% Similarity=0.277 Sum_probs=73.2
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCChhhHHHHHHHHHhcCCh
Q 006388 383 LSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PF-PPDAIGWATLLSSCRIHGNV 460 (647)
Q Consensus 383 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~~~~ 460 (647)
...+...|++++|..+++.+.+. .+.+...+..+...+...|++++|.++++++ .. +.+...|..+...+...|++
T Consensus 8 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 85 (136)
T 2fo7_A 8 GNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY 85 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCH
Confidence 33344444444444444444332 1123344444555555555555555555554 11 22355666667777777777
Q ss_pred hHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 461 EIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 461 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
++|...++++.+..|.++..+..++.+|...|++++|.+.++++.+
T Consensus 86 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 86 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 7777777777777777777777777777778888888777777665
No 94
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.93 E-value=1.3e-09 Score=94.53 Aligned_cols=139 Identities=9% Similarity=-0.014 Sum_probs=95.2
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHH
Q 006388 351 YAKFGKANETIDLFEKMLSHGLKPDEV-TLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLE 429 (647)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 429 (647)
+...|++++|+..+++.... .|+.. .+..+...|.+.|++++|.+.|+..++. -+-+...|..+..+|.+.|+++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchH
Confidence 33445566666666655432 23322 4445556666677777777777766643 1234567777777778888888
Q ss_pred HHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCChhHHHH-HHHHHhccCCCCchhHHHHHHhhhhCCC
Q 006388 430 EAKSFINKM-PFPPD-AIGWATLLSSCRIHGNVEIGKW-AAESLLELDPYNPASYVLLSSIYASKGK 493 (647)
Q Consensus 430 ~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 493 (647)
+|...|++. ...|+ ..+|..+...+...|+.++|.+ .++++++++|+++.+|.....++...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888877776 44554 7788888888888888876555 4688999999999998888888887775
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.89 E-value=6e-09 Score=114.30 Aligned_cols=168 Identities=7% Similarity=-0.061 Sum_probs=138.0
Q ss_pred HhcCCHHHHHHHHhhcC-----------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc
Q 006388 321 GKCGNIEDSHRLFNEMN-----------VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKP-DEVTLIGVLSACSR 388 (647)
Q Consensus 321 ~~~g~~~~A~~~~~~~~-----------~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~ 388 (647)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|+..|++..+. .| +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 67788999998888765 336678888889999999999999999998874 45 44577888888999
Q ss_pred CCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHH
Q 006388 389 AGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWA 466 (647)
Q Consensus 389 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~ 466 (647)
.|++++|...|+...+. .+.+...|..+..+|.+.|++++ .+.|+++ ...| +...|..+..++...|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998864 13356788889999999999999 8888887 4445 477899999999999999999999
Q ss_pred HHHHhccCCCCchhHHHHHHhhhhCCC
Q 006388 467 AESLLELDPYNPASYVLLSSIYASKGK 493 (647)
Q Consensus 467 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 493 (647)
++++++++|++..++..++.+|...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999999999999999987666
No 96
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.89 E-value=3e-07 Score=88.04 Aligned_cols=242 Identities=8% Similarity=-0.047 Sum_probs=158.9
Q ss_pred HHhcCCHHHHHHHHhcCCCCCh-hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 006388 219 YCKCKSIKYAESVFRTMAWKNV-VSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQF 297 (647)
Q Consensus 219 y~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 297 (647)
..-.|.+..+..-...+...+. ..---+.++|...|++.... .-.|....+..+...+ ..+ +...
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~~~-~~~----a~~~ 88 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQFL-DTK----NIEE 88 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHHHH-TTT----CCHH
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHHHh-ccc----HHHH
Confidence 3345666666665555443322 22233446677777665321 1223332333332222 222 5566
Q ss_pred HHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 006388 298 HGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNV-----RDEVSWTALVSGYAKFGKANETIDLFEKMLSHGL 372 (647)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 372 (647)
++.....+ .++......+..+|...|++++|++++.+... .+...+-.++..+.+.|+.+.|.+.+++|.+.
T Consensus 89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~-- 165 (310)
T 3mv2_B 89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA-- 165 (310)
T ss_dssp HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 66665554 34444456788889999999999999988742 24567778889999999999999999999874
Q ss_pred CC-----CHHHHHHHHHHH--hc--CCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC--
Q 006388 373 KP-----DEVTLIGVLSAC--SR--AGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PF-- 440 (647)
Q Consensus 373 ~p-----~~~t~~~ll~a~--~~--~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-- 440 (647)
.| +..+...+..++ .. .+++.+|..+|+++... .|+...-..+..++.+.|++++|.+.++.+ ..
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 66 366667777663 22 34899999999998754 355333334444888999999999998765 21
Q ss_pred --------CC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHH
Q 006388 441 --------PP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYV 482 (647)
Q Consensus 441 --------~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 482 (647)
.| ++.+...++......|+ .|.++++++.+..|+++.+..
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 24 46666566666666676 789999999999999876644
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.88 E-value=4.9e-08 Score=82.04 Aligned_cols=131 Identities=19% Similarity=0.285 Sum_probs=98.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHH
Q 006388 343 SWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDIL 422 (647)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 422 (647)
.|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 46667777777888888888888877642 234556677777777888888888888887654 234556777788888
Q ss_pred HHcCCHHHHHHHHHhC-CCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 006388 423 SRAGRLEEAKSFINKM-PFP-PDAIGWATLLSSCRIHGNVEIGKWAAESLLELDPY 476 (647)
Q Consensus 423 ~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 476 (647)
...|++++|.++++++ ... .+...|..+...+...|++++|...++++++.+|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8888888888888776 222 35677888888888889999999999888888774
No 98
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.85 E-value=2.7e-08 Score=96.65 Aligned_cols=172 Identities=11% Similarity=-0.025 Sum_probs=130.1
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Q 006388 329 SHRLFNEMNVRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPD-EVTLIGVLSACSRAGLVEKGRHYFEIMVKEYG 407 (647)
Q Consensus 329 A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 407 (647)
..+.+......+...+..+...+.+.|++++|+..|++..+. .|+ ...+..+...+...|++++|...++.+...
T Consensus 105 l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-- 180 (287)
T 3qou_A 105 IRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-- 180 (287)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--
Confidence 334444444445556667777788888888888888888874 454 447777788888889999999888877543
Q ss_pred CCcChHHHHHH-HHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCC--chhHH
Q 006388 408 IRPIHDHYTCM-IDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYN--PASYV 482 (647)
Q Consensus 408 ~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~ 482 (647)
.|+....... ...+.+.|+.++|.+.+++. ...| +...+..+...+...|++++|...++++++.+|++ ...+.
T Consensus 181 -~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~ 259 (287)
T 3qou_A 181 -DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX 259 (287)
T ss_dssp -GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred -hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence 4554333222 23366777788888888776 3344 57889999999999999999999999999999987 88899
Q ss_pred HHHHhhhhCCChhHHHHHHHHHH
Q 006388 483 LLSSIYASKGKWDHVSQLRRTMR 505 (647)
Q Consensus 483 ~l~~~~~~~g~~~~a~~~~~~m~ 505 (647)
.|+.+|...|+.++|...+++..
T Consensus 260 ~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 260 TFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHH
Confidence 99999999999999998887654
No 99
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.80 E-value=2.5e-07 Score=99.41 Aligned_cols=159 Identities=12% Similarity=0.052 Sum_probs=121.1
Q ss_pred cCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHH
Q 006388 323 CGNIEDSHRLFNEMNV---RDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPD-EVTLIGVLSACSRAGLVEKGRHY 398 (647)
Q Consensus 323 ~g~~~~A~~~~~~~~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 398 (647)
.|++++|.+.|++... .+...|..+...|.+.|++++|++.|++..+. .|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3677788888877652 35678888889999999999999999998875 444 55888888899999999999999
Q ss_pred HHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhc---CChhHHHHHHHHHhcc
Q 006388 399 FEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIH---GNVEIGKWAAESLLEL 473 (647)
Q Consensus 399 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~ 473 (647)
++...+. .+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9998864 2345678899999999999999999999887 3344 477888999999999 9999999999999999
Q ss_pred CCCCchhHHHHH
Q 006388 474 DPYNPASYVLLS 485 (647)
Q Consensus 474 ~p~~~~~~~~l~ 485 (647)
+|.+...|..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999888887766
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.80 E-value=2.8e-07 Score=84.88 Aligned_cols=162 Identities=10% Similarity=-0.022 Sum_probs=126.1
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC----cHHHHHHHHHHHHHhcCCCcChHH
Q 006388 339 RDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAG----LVEKGRHYFEIMVKEYGIRPIHDH 414 (647)
Q Consensus 339 ~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~ 414 (647)
.++.++..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|.++|+...+. .+...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 366677777777777888888888888887765 45566666666666 5 788888888888653 35567
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHhC-CCCCC---hhhHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCchhHH
Q 006388 415 YTCMIDILSR----AGRLEEAKSFINKM-PFPPD---AIGWATLLSSCRI----HGNVEIGKWAAESLLELDPYNPASYV 482 (647)
Q Consensus 415 ~~~li~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~ 482 (647)
+..|..+|.. .+++++|.++|++. ...|+ +..+..|...|.. .++.++|...++++.+. |.++..+.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 7777777876 78899999999887 33443 7788888888887 78899999999999888 66778899
Q ss_pred HHHHhhhhC-C-----ChhHHHHHHHHHHhCCC
Q 006388 483 LLSSIYASK-G-----KWDHVSQLRRTMREKGV 509 (647)
Q Consensus 483 ~l~~~~~~~-g-----~~~~a~~~~~~m~~~g~ 509 (647)
.|+.+|... | ++++|.+.+++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999764 3 89999999999888765
No 101
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.79 E-value=7.7e-09 Score=89.55 Aligned_cols=121 Identities=12% Similarity=-0.005 Sum_probs=101.1
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCcC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCC
Q 006388 383 LSACSRAGLVEKGRHYFEIMVKEYGIRPI-HDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGN 459 (647)
Q Consensus 383 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~ 459 (647)
...+...|++++|+..++... ...|+ ...+-.+...|.+.|++++|.+.|++. ...| +..+|..+...+...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 345566789999999988765 33443 345667899999999999999999988 4555 58899999999999999
Q ss_pred hhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHH-HHHHHh
Q 006388 460 VEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQL-RRTMRE 506 (647)
Q Consensus 460 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 506 (647)
+++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887765 476665
No 102
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.78 E-value=1e-07 Score=93.63 Aligned_cols=220 Identities=10% Similarity=0.041 Sum_probs=147.2
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHH
Q 006388 253 NGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRL 332 (647)
Q Consensus 253 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 332 (647)
.|++++|.+++++..+.. +.. + +...++++.|...+..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 456677777777665431 110 0 11135566666655443 3456667777777777
Q ss_pred HhhcCC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhcCCcHHHHHHH
Q 006388 333 FNEMNV-----RD----EVSWTALVSGYAKFGKANETIDLFEKMLSHG---LKPD--EVTLIGVLSACSRAGLVEKGRHY 398 (647)
Q Consensus 333 ~~~~~~-----~d----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~~~ 398 (647)
|.+... .+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 665431 11 3467788888999999999999998876521 1222 2467778888888 999999999
Q ss_pred HHHHHHhcCCC---c-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC---CCC----hhhHHHHHHHHHhcCChhHHHHH
Q 006388 399 FEIMVKEYGIR---P-IHDHYTCMIDILSRAGRLEEAKSFINKM-PF---PPD----AIGWATLLSSCRIHGNVEIGKWA 466 (647)
Q Consensus 399 ~~~~~~~~~~~---p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~ll~~~~~~~~~~~a~~~ 466 (647)
|+....-+.-. + ...++..+...|.+.|++++|.+.|++. .. .++ ...+..++..+...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99887532111 1 1467888999999999999999999887 11 122 23566777777888999999999
Q ss_pred HHHHhccCCCCchh-----HHHHHHhhhhCCChhHHHHH
Q 006388 467 AESLLELDPYNPAS-----YVLLSSIYASKGKWDHVSQL 500 (647)
Q Consensus 467 ~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~~ 500 (647)
+++++ +.|..... ...++.+| ..|+.+.+.++
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999 98865432 44555555 56777666553
No 103
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.78 E-value=3.6e-06 Score=88.01 Aligned_cols=361 Identities=10% Similarity=-0.031 Sum_probs=166.4
Q ss_pred CC-ChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCC--CCchHHHHHHHHHHhcCC-hHHHHHH
Q 006388 55 RR-CVDLGRQIHGHILKFGFGSYVFVGSPLVDMYAKLGLIYDAKRGFDELPE--KNIVMYNTMITGLLRRGL-VEESRRL 130 (647)
Q Consensus 55 ~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~~ 130 (647)
.| ++..|+.+++.++..= |. |+++.+..+|++... |++..|...+.-..+.+. .+....+
T Consensus 7 ~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~ 70 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEV 70 (493)
T ss_dssp -----CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHH
T ss_pred cCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHH
Confidence 45 3777788887776542 21 889999999988765 777788887777776653 3444555
Q ss_pred hhcCC------CCCeehHHHHHHHHH----hCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHh---cCCChHHHHHHH
Q 006388 131 FRGMK------DKDSISWTTMITGLM----QNGLEREAIDLFREMRLEGLAMDQFTFGSVLTACG---GLLALEEGKQIH 197 (647)
Q Consensus 131 ~~~~~------~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~---~~~~~~~a~~~~ 197 (647)
|+... ..+...|...+..+. .+++.+.+..+|++.... ++.. +..+-..|. ...+...+..+.
T Consensus 71 fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~--~~~lw~~Y~~fE~~~~~~~~~~~~ 146 (493)
T 2uy1_A 71 YEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMGS--LSELWKDFENFELELNKITGKKIV 146 (493)
T ss_dssp HHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTT--HHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhhh--HHHHHHHHHHHHHHhccccHHHHH
Confidence 55432 124456666666543 235566777777777763 1111 112222111 111111121111
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC----CCChhHHHHHHHHHHhcCC-------hhHHHHHHHHH
Q 006388 198 AFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMA----WKNVVSWTAMLVGYGQNGC-------SEEAVKIFCNM 266 (647)
Q Consensus 198 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m 266 (647)
.... +.+..|+.+++.+. ..+...|...+.--..++. .+.+..+|+++
T Consensus 147 ~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~a 205 (493)
T 2uy1_A 147 GDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYI 205 (493)
T ss_dssp HHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHH
Confidence 1110 11222222222211 1233455554443222211 23455677776
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHH-HHHHhhcC--------
Q 006388 267 QRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDS-HRLFNEMN-------- 337 (647)
Q Consensus 267 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~~-------- 337 (647)
.... +-+...|...+.-+...|+++.|..++++.+.. +.+...+.. |+...+.++. ..+.+...
T Consensus 206 l~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~ 278 (493)
T 2uy1_A 206 LDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAE 278 (493)
T ss_dssp HHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC--------
T ss_pred HHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhh
Confidence 6642 334555555566666677777777777777776 333333322 2221111111 01111100
Q ss_pred ----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHhcCCCcCh
Q 006388 338 ----VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACS-RAGLVEKGRHYFEIMVKEYGIRPIH 412 (647)
Q Consensus 338 ----~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~~~~~~~~~~~~p~~ 412 (647)
......|-..+....+.+..+.|..+|++. .. ..++...|......-. ..++.+.|+.+|+...+.++- ++
T Consensus 279 ~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~ 354 (493)
T 2uy1_A 279 KVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--ST 354 (493)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CH
T ss_pred hhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--CH
Confidence 001123444444444555566666666655 21 1112222321111111 122456666666665554322 22
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 006388 413 DHYTCMIDILSRAGRLEEAKSFINKMPFPPDAIGWATLLSSCRIHGNVEIGKWAAES 469 (647)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 469 (647)
..+...++...+.|+.+.|..+|+++. .....|...+.--..+|+.+.+..++++
T Consensus 355 ~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~ 409 (493)
T 2uy1_A 355 LLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQ 409 (493)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 334445555555666666666666652 1344455555444445555444444443
No 104
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.77 E-value=1.2e-07 Score=103.90 Aligned_cols=188 Identities=12% Similarity=0.059 Sum_probs=141.6
Q ss_pred hccCChHHHHHHHHHHH--------HhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHc
Q 006388 286 ANLASLEEGTQFHGRSL--------VTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMN---VRDEVSWTALVSGYAKF 354 (647)
Q Consensus 286 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~ 354 (647)
...|++++|.+.++.+. +. .+.+...+..+...|.+.|++++|.+.|++.. ..+...|..+..+|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 66778888888888776 32 24456677788888999999999999998876 44778899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHH
Q 006388 355 GKANETIDLFEKMLSHGLKPD-EVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKS 433 (647)
Q Consensus 355 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 433 (647)
|++++|+..|++..+. .|+ ...+..+..++...|++++ .+.|+...+. -+.+...|..+..+|.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999884 454 4578888888999999999 9999988764 23356788999999999999999999
Q ss_pred HHHhC-CCCCC-hhhHHHHHHHHHhcCC-----hhHHHHHHHHHhccCCCCch
Q 006388 434 FINKM-PFPPD-AIGWATLLSSCRIHGN-----VEIGKWAAESLLELDPYNPA 479 (647)
Q Consensus 434 ~~~~~-~~~p~-~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~p~~~~ 479 (647)
.|+++ ...|+ ...|..+..++...++ .+...++.+.+.++.+.++.
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 99998 56776 6677777777766554 23444444444455444443
No 105
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.75 E-value=3e-08 Score=85.50 Aligned_cols=102 Identities=11% Similarity=-0.021 Sum_probs=90.1
Q ss_pred CCCcC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHH
Q 006388 407 GIRPI-HDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVL 483 (647)
Q Consensus 407 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 483 (647)
.+.|+ ...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 34453 467778888899999999999999988 4455 58899999999999999999999999999999999999999
Q ss_pred HHHhhhhCCChhHHHHHHHHHHhCC
Q 006388 484 LSSIYASKGKWDHVSQLRRTMREKG 508 (647)
Q Consensus 484 l~~~~~~~g~~~~a~~~~~~m~~~g 508 (647)
++.+|...|++++|.+.+++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999988743
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.75 E-value=6.5e-08 Score=104.05 Aligned_cols=151 Identities=15% Similarity=0.030 Sum_probs=116.8
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHH
Q 006388 354 FGKANETIDLFEKMLSHGLKPD-EVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAK 432 (647)
Q Consensus 354 ~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 432 (647)
.|++++|+..|++..+. .|+ ...+..+...+...|++++|.+.|+...+. .+.+...+..+...|...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 47889999999998874 454 568888889999999999999999998753 2335788999999999999999999
Q ss_pred HHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhC---CChhHHHHHHHHHHhC
Q 006388 433 SFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASK---GKWDHVSQLRRTMREK 507 (647)
Q Consensus 433 ~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~~ 507 (647)
+.+++. ...| +...|..+...+...|++++|...++++++.+|+++..+..++.+|... |++++|.+.+++..+.
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999987 3344 4789999999999999999999999999999999999999999999999 9999999999988654
Q ss_pred C
Q 006388 508 G 508 (647)
Q Consensus 508 g 508 (647)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 3
No 107
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.72 E-value=1.8e-07 Score=85.90 Aligned_cols=126 Identities=10% Similarity=0.047 Sum_probs=95.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHc
Q 006388 347 LVSGYAKFGKANETIDLFEKMLSHGLKPD-EVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRA 425 (647)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 425 (647)
+...|.+.|++++|+..|++..+. .|+ ...+..+..++...|++++|...|+...+. -+.+...+..+...|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 788888999999999999998884 454 557888888899999999999999998864 233567888888888766
Q ss_pred CC--HHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 006388 426 GR--LEEAKSFINKMPFPPD--AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYN 477 (647)
Q Consensus 426 g~--~~~A~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 477 (647)
|. .+++...++... .|+ ...|..+..++...|++++|+..+++++++.|++
T Consensus 136 ~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred hHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 54 445666666663 333 3345556667778899999999999999999953
No 108
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.72 E-value=8.7e-08 Score=79.95 Aligned_cols=108 Identities=12% Similarity=0.005 Sum_probs=59.6
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHH
Q 006388 378 TLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCR 455 (647)
Q Consensus 378 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 455 (647)
.+......+.+.|++++|++.|+..++. .+.+...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3444445555555555555555555432 1223455555555555666666666555554 2233 3555666666666
Q ss_pred hcCChhHHHHHHHHHhccCCCCchhHHHHHHh
Q 006388 456 IHGNVEIGKWAAESLLELDPYNPASYVLLSSI 487 (647)
Q Consensus 456 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 487 (647)
..|++++|+..++++++++|+++.++..|.++
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 66666666666666666666666555555443
No 109
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.72 E-value=5.6e-08 Score=83.80 Aligned_cols=101 Identities=11% Similarity=0.047 Sum_probs=88.5
Q ss_pred CCCc-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHH
Q 006388 407 GIRP-IHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVL 483 (647)
Q Consensus 407 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 483 (647)
.+.| +...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 3344 4566777888999999999999999887 3344 68889999999999999999999999999999999999999
Q ss_pred HHHhhhhCCChhHHHHHHHHHHhC
Q 006388 484 LSSIYASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 484 l~~~~~~~g~~~~a~~~~~~m~~~ 507 (647)
++.+|...|++++|.+.+++..+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999998763
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.72 E-value=6.6e-08 Score=86.20 Aligned_cols=76 Identities=11% Similarity=-0.037 Sum_probs=57.3
Q ss_pred HHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCC--chhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 431 AKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYN--PASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 431 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
|.+.+++. ...| +...|..+...+...|++++|...++++++.+|+. +..+..++.+|...|+.++|...+++...
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 44445444 2334 47778888888888888888888888888888764 55888888888888888888888876543
No 111
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.68 E-value=2.4e-05 Score=81.67 Aligned_cols=347 Identities=11% Similarity=0.003 Sum_probs=197.9
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCC-hHHHHHHHHHHHHh-CC-CCchhhHHHHH
Q 006388 8 SWNLLISGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRC-VDLGRQIHGHILKF-GF-GSYVFVGSPLV 84 (647)
Q Consensus 8 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~-g~-~~~~~~~~~li 84 (647)
.|...+..+-. |+++.+..+|++.... .|+...|..-++...+.++ .+....+|+.++.. |. +.+..+|...+
T Consensus 17 vyer~l~~~P~-~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 17 IMEHARRLYMS-KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHCCC-CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 35556666644 7899999999999875 5688888888877666553 35567788887765 53 33566777777
Q ss_pred HHHH----hcCChHHHHHHhccCCC-C--Cc-hHHHHHHHHHH-------------hcCChHHHHHHhhcCCC----CCe
Q 006388 85 DMYA----KLGLIYDAKRGFDELPE-K--NI-VMYNTMITGLL-------------RRGLVEESRRLFRGMKD----KDS 139 (647)
Q Consensus 85 ~~~~----~~g~~~~A~~~~~~~~~-~--~~-~~~~~li~~~~-------------~~g~~~~A~~~~~~~~~----~~~ 139 (647)
..+. ..|+++.++++|++... | +. ..|......-. ..+.+..|..+++.+.. .+.
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~ 172 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSV 172 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSH
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccH
Confidence 6654 34678889999987754 2 11 12222211110 11122233333332221 133
Q ss_pred ehHHHHHHHHHhCC--C-----hhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHH
Q 006388 140 ISWTTMITGLMQNG--L-----EREAIDLFREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVG 212 (647)
Q Consensus 140 ~~~~~li~~~~~~g--~-----~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 212 (647)
..|...+..-..++ - .+.+..+|+++.... +-+...|...+.-+...|+.+.|..+++..++. +.+...+
T Consensus 173 ~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~ 249 (493)
T 2uy1_A 173 KNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLS 249 (493)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHH
T ss_pred HHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHH
Confidence 35655555433221 1 234667888877643 334556666666777788899999999988887 3343333
Q ss_pred HHHHHHHHhcCCHHHH-HHHHhcCC--C-------C---ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 006388 213 SALVDMYCKCKSIKYA-ESVFRTMA--W-------K---NVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLG 279 (647)
Q Consensus 213 ~~li~~y~~~g~~~~A-~~~~~~~~--~-------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 279 (647)
.. |+.....++. ..+.+... . + ....|-..+....+.++.+.|..+|.+. ... ..+...|.
T Consensus 250 ~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i 323 (493)
T 2uy1_A 250 LY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFI 323 (493)
T ss_dssp HH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHH
T ss_pred HH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHH
Confidence 32 3222111111 11111110 0 0 1234666666666677788888888877 221 12333332
Q ss_pred HHHHHHh-ccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChH
Q 006388 280 SVISSCA-NLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFGKAN 358 (647)
Q Consensus 280 ~ll~a~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~ 358 (647)
.....-. ..++.+.|+.+++...+.- +.++..+...++...+.|+.+.|..+|+++. .....|...+.--...|+.+
T Consensus 324 ~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~ 401 (493)
T 2uy1_A 324 YCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSME 401 (493)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHH
Confidence 2111111 1235788888888877753 3334455667777777888888888888874 34556666666556667777
Q ss_pred HHHHHHHHHHH
Q 006388 359 ETIDLFEKMLS 369 (647)
Q Consensus 359 ~A~~~~~~m~~ 369 (647)
.+..+++++..
T Consensus 402 ~~r~v~~~~~~ 412 (493)
T 2uy1_A 402 LFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77776666653
No 112
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.67 E-value=4.2e-06 Score=80.95 Aligned_cols=149 Identities=12% Similarity=0.141 Sum_probs=87.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHH--HHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCC-----
Q 006388 355 GKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVE--KGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGR----- 427 (647)
Q Consensus 355 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----- 427 (647)
+++++++.+++++.+.. +-|...|..-...+.+.|.++ +++++++.+++. -.-+-..|+.-..++.+.|.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhh
Confidence 45566666666665532 223445554444445555555 666666666543 12344445544444555554
Q ss_pred -HHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCh-hHHHHHHHHHhccC---CCCchhHHHHHHhhhhCCChhHHHHH
Q 006388 428 -LEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNV-EIGKWAAESLLELD---PYNPASYVLLSSIYASKGKWDHVSQL 500 (647)
Q Consensus 428 -~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~ 500 (647)
++++++.++++ ...| |...|+-+...+.+.|+. +....+++++.+++ |.++.++..++.+|.+.|+.++|.++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 66666666655 2233 466777777666666653 33455666666655 66677777777777777777777777
Q ss_pred HHHHHh
Q 006388 501 RRTMRE 506 (647)
Q Consensus 501 ~~~m~~ 506 (647)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777654
No 113
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.67 E-value=9.8e-08 Score=79.63 Aligned_cols=100 Identities=12% Similarity=0.103 Sum_probs=90.2
Q ss_pred CCcC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHH
Q 006388 408 IRPI-HDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLL 484 (647)
Q Consensus 408 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 484 (647)
+.|+ ...+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4554 367788899999999999999999987 4445 588999999999999999999999999999999999999999
Q ss_pred HHhhhhCCChhHHHHHHHHHHhC
Q 006388 485 SSIYASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 485 ~~~~~~~g~~~~a~~~~~~m~~~ 507 (647)
+.+|...|++++|.+.+++..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998773
No 114
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.66 E-value=4.2e-06 Score=81.35 Aligned_cols=160 Identities=8% Similarity=-0.063 Sum_probs=119.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcC----hHHHHH
Q 006388 347 LVSGYAKFGKANETIDLFEKMLSHG-LKPDEV----TLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPI----HDHYTC 417 (647)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 417 (647)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...|+...+...-.++ ...++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566788888999999988887642 222321 2334566677788999999999888763222223 346888
Q ss_pred HHHHHHHcCCHHHHHHHHHhCC-----C---CCC-hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------chhHH
Q 006388 418 MIDILSRAGRLEEAKSFINKMP-----F---PPD-AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYN------PASYV 482 (647)
Q Consensus 418 li~~~~~~g~~~~A~~~~~~~~-----~---~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 482 (647)
+...|...|++++|.+.++++- . .|. ..++..+...|...|++++|...+++++++.+.. +.+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999998887761 1 112 4478889999999999999999999988765332 57899
Q ss_pred HHHHhhhhCCC-hhHHHHHHHHHHh
Q 006388 483 LLSSIYASKGK-WDHVSQLRRTMRE 506 (647)
Q Consensus 483 ~l~~~~~~~g~-~~~a~~~~~~m~~ 506 (647)
.++.+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999988753
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.64 E-value=9.3e-08 Score=93.90 Aligned_cols=196 Identities=6% Similarity=-0.059 Sum_probs=148.8
Q ss_pred cCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 006388 288 LASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFGKANETIDLFEKM 367 (647)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m 367 (647)
.|++++|.+++.+..+..-. . .+...+++++|...|.+ ....|...|++++|...|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHH
Confidence 56778888888887764211 1 11115788888888765 466788999999999999987
Q ss_pred HHC----CCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC--Cc--ChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006388 368 LSH----GLKPD-EVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGI--RP--IHDHYTCMIDILSRAGRLEEAKSFINKM 438 (647)
Q Consensus 368 ~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~ 438 (647)
.+. |-.+. ..+|..+...|...|++++|...|+...+-+.- .| ...++..+..+|.+ |++++|++.+++.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 653 21111 237888888999999999999999987654211 11 24678888999988 9999999999876
Q ss_pred -CC---CCC----hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc------hhHHHHHHhhhhCCChhHHHHHHHHH
Q 006388 439 -PF---PPD----AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNP------ASYVLLSSIYASKGKWDHVSQLRRTM 504 (647)
Q Consensus 439 -~~---~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m 504 (647)
.+ ..+ ..++..+...+...|++++|+..+++++++.|.+. ..+..++.++...|++++|...+++.
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11 111 46788899999999999999999999998766433 36777888899999999999999987
Q ss_pred H
Q 006388 505 R 505 (647)
Q Consensus 505 ~ 505 (647)
.
T Consensus 222 l 222 (307)
T 2ifu_A 222 Y 222 (307)
T ss_dssp T
T ss_pred h
Confidence 7
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.63 E-value=6e-07 Score=82.54 Aligned_cols=123 Identities=9% Similarity=-0.031 Sum_probs=95.4
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcC
Q 006388 381 GVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHG 458 (647)
Q Consensus 381 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~ 458 (647)
.+...+...|++++|...|+.. +.|+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence 3444566677777777777644 3456677777777777788888887777766 2233 4677888888888888
Q ss_pred ChhHHHHHHHHHhccCCCCc----------------hhHHHHHHhhhhCCChhHHHHHHHHHHhCC
Q 006388 459 NVEIGKWAAESLLELDPYNP----------------ASYVLLSSIYASKGKWDHVSQLRRTMREKG 508 (647)
Q Consensus 459 ~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 508 (647)
++++|...++++++..|.+. ..+..++.+|...|++++|.+.+++..+..
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 89999999998888888776 889999999999999999999999988743
No 117
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.61 E-value=4.1e-07 Score=80.97 Aligned_cols=155 Identities=9% Similarity=-0.065 Sum_probs=111.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-Hhc
Q 006388 313 SNALVTFYGKCGNIEDSHRLFNEMN---VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSA-CSR 388 (647)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~ 388 (647)
...+...+.+.|++++|...|++.. ..+...|..+...+...|++++|+..|++.... .|+.......... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 3445667778888888888888877 336677888888888889999998888887654 3443322221111 112
Q ss_pred CCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---hhhHHHHHHHHHhcCChhHHH
Q 006388 389 AGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPPD---AIGWATLLSSCRIHGNVEIGK 464 (647)
Q Consensus 389 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~~~~~~~a~ 464 (647)
.+...+|...++...+. .+.+...+..+...|...|++++|.+.++++ ...|+ ...|..+...+...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 12223467778877753 2235678888999999999999999999887 44554 558889999999999999999
Q ss_pred HHHHHHh
Q 006388 465 WAAESLL 471 (647)
Q Consensus 465 ~~~~~~~ 471 (647)
..+++.+
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988765
No 118
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.61 E-value=7.2e-07 Score=86.81 Aligned_cols=164 Identities=9% Similarity=-0.063 Sum_probs=119.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC--CcC--hH
Q 006388 343 SWTALVSGYAKFGKANETIDLFEKMLSHGLKPDE-----VTLIGVLSACSRAGLVEKGRHYFEIMVKEYGI--RPI--HD 413 (647)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~--~~ 413 (647)
.+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|...++...+...- .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444566777888888888888887765322111 12333455667788999999998887643111 111 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC-----hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCC------Cc
Q 006388 414 HYTCMIDILSRAGRLEEAKSFINKM----PFPPD-----AIGWATLLSSCRIHGNVEIGKWAAESLLELDPY------NP 478 (647)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------~~ 478 (647)
.|+.+...|...|++++|.+.++++ ...|+ ..++..+...|...|++++|...+++++++.+. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888899999999999999988776 11222 258888999999999999999999998876432 15
Q ss_pred hhHHHHHHhhhhCCChhHH-HHHHHHHHh
Q 006388 479 ASYVLLSSIYASKGKWDHV-SQLRRTMRE 506 (647)
Q Consensus 479 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 506 (647)
.+|..++.+|...|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6789999999999999999 777777653
No 119
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.61 E-value=1.1e-06 Score=81.63 Aligned_cols=183 Identities=8% Similarity=-0.048 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCc--chhHHHHHHHHHHhcCCHHHHHHHHhhcC--CC-Chh---hHHH
Q 006388 275 DFTLGSVISSCANLASLEEGTQFHGRSLVTGLIS--FITVSNALVTFYGKCGNIEDSHRLFNEMN--VR-DEV---SWTA 346 (647)
Q Consensus 275 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-d~~---~~~~ 346 (647)
...+......+...|++++|...+..+++..... ....+..+..+|.+.|++++|...|++.. .| +.. +|..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3455566677888999999999999999864221 24567778999999999999999999976 23 222 4555
Q ss_pred HHHHHHH------------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Q 006388 347 LVSGYAK------------------FGKANETIDLFEKMLSHGLKPDEV-TLIGVLSACSRAGLVEKGRHYFEIMVKEYG 407 (647)
Q Consensus 347 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 407 (647)
+..++.. .|++++|+..|++..+. .|+.. .... ......+...
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a--------------~~~l~~~~~~-- 145 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDA--------------TKRLVFLKDR-- 145 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHH--------------HHHHHHHHHH--
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHH--------------HHHHHHHHHH--
Confidence 5555554 57899999999999985 45543 2111 1111111100
Q ss_pred CCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 006388 408 IRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPPD----AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNP 478 (647)
Q Consensus 408 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 478 (647)
.......+...|.+.|++++|...|+++ ...|+ ...+..+..++.+.|+.++|+..++++....|++.
T Consensus 146 ---~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 146 ---LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp ---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred ---HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 0112235677889999999999999887 33343 35688899999999999999999999998888754
No 120
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.60 E-value=2e-06 Score=83.34 Aligned_cols=156 Identities=8% Similarity=-0.008 Sum_probs=80.8
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhhHHH-HHHHHHHc
Q 006388 278 LGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNV--RDEVSWTA-LVSGYAKF 354 (647)
Q Consensus 278 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~d~~~~~~-li~~~~~~ 354 (647)
+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|...|+++.. |+...... ....+.+.
T Consensus 120 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~ 198 (287)
T 3qou_A 120 XAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQ 198 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhh
Confidence 3334444445555555555555555443 33445555666666666777777777766652 22222111 12224455
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHH
Q 006388 355 GKANETIDLFEKMLSHGLKPD-EVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKS 433 (647)
Q Consensus 355 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 433 (647)
++.++|+..|++.... .|+ ...+..+..++...|++++|...|+.+.+...-..+...+..++..|...|+.++|..
T Consensus 199 ~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~ 276 (287)
T 3qou_A 199 AADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALAS 276 (287)
T ss_dssp HTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHH
Confidence 5566666666666553 333 3355555556666666666666666665442111224455555555555555555554
Q ss_pred HHH
Q 006388 434 FIN 436 (647)
Q Consensus 434 ~~~ 436 (647)
.++
T Consensus 277 ~~r 279 (287)
T 3qou_A 277 XYR 279 (287)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 121
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.60 E-value=3.6e-07 Score=78.05 Aligned_cols=96 Identities=14% Similarity=0.008 Sum_probs=84.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhh
Q 006388 412 HDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYA 489 (647)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 489 (647)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 455667778888999999999999887 3344 57889999999999999999999999999999999999999999999
Q ss_pred hCCChhHHHHHHHHHHhC
Q 006388 490 SKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 490 ~~g~~~~a~~~~~~m~~~ 507 (647)
..|++++|.+.+++..+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999988763
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.60 E-value=2.5e-06 Score=78.34 Aligned_cols=143 Identities=6% Similarity=-0.058 Sum_probs=83.1
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHH
Q 006388 315 ALVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEK 394 (647)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 394 (647)
.+...+...|++++|.+.|++...++...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|++++
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~ 89 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL 89 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHH
Confidence 445556666777777777766665566666666666666666666666666665532 2233355555555555666666
Q ss_pred HHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 006388 395 GRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKMPFPPD-AIGWATLLSSCRIHGNVEIGKWAAESLLEL 473 (647)
Q Consensus 395 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 473 (647)
|...|+...+...-.+... +...| +...|+ ...|..+...+...|++++|...+++++++
T Consensus 90 A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 90 AIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 6665555543211100000 00000 011222 366777888888888888888888888888
Q ss_pred CCCC
Q 006388 474 DPYN 477 (647)
Q Consensus 474 ~p~~ 477 (647)
.|++
T Consensus 151 ~p~~ 154 (213)
T 1hh8_A 151 KSEP 154 (213)
T ss_dssp CCSG
T ss_pred Cccc
Confidence 8865
No 123
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.59 E-value=1.1e-06 Score=80.52 Aligned_cols=185 Identities=14% Similarity=0.022 Sum_probs=115.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHh
Q 006388 243 WTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGK 322 (647)
Q Consensus 243 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 322 (647)
+-.....+...|++++|+..|++.... .|+......... . .. .........+.+...|.+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~-~---~~--------------~~~~~~~~~~~lg~~~~~ 66 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTN-V---DK--------------NSEISSKLATELALAYKK 66 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHH-S---CT--------------TSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhh-h---cc--------------hhhhhHHHHHHHHHHHHH
Confidence 334455667778888888888877764 344322111100 0 00 001122233457778888
Q ss_pred cCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCc--HHHHH
Q 006388 323 CGNIEDSHRLFNEMN---VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPD-EVTLIGVLSACSRAGL--VEKGR 396 (647)
Q Consensus 323 ~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~--~~~a~ 396 (647)
.|++++|...|++.. ..++..|..+...|...|++++|+..|++..+. .|+ ..++..+..++...|. .+.+.
T Consensus 67 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~ 144 (208)
T 3urz_A 67 NRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLE 144 (208)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence 888888888888765 346778888888888889999999999888874 454 4467777666655443 34445
Q ss_pred HHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCChhhHHHHHH
Q 006388 397 HYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPPDAIGWATLLS 452 (647)
Q Consensus 397 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~ 452 (647)
..++... ...|....+..+...+...|++++|...|++. ...|+......+..
T Consensus 145 ~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 145 TDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 5554442 22333333444566677788999999999887 67788666555544
No 124
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.57 E-value=3.3e-05 Score=74.62 Aligned_cols=227 Identities=10% Similarity=0.050 Sum_probs=155.8
Q ss_pred ChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccC--ChHHHHHHHHHHHHhCCCcchhHHHHHHHHH----Hhc---C
Q 006388 255 CSEEAVKIFCNMQRNGIEPDDF-TLGSVISSCANLA--SLEEGTQFHGRSLVTGLISFITVSNALVTFY----GKC---G 324 (647)
Q Consensus 255 ~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g 324 (647)
..++|++++..+... .|+.. .++.--.++...+ .++++...+..++... +.+..+|+.-...+ .+. +
T Consensus 48 ~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 48 YSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 334566666666553 34432 3344444444455 6666666666666554 22333343333333 333 6
Q ss_pred CHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCc------HH
Q 006388 325 NIEDSHRLFNEMN---VRDEVSWTALVSGYAKFGKAN--ETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGL------VE 393 (647)
Q Consensus 325 ~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~------~~ 393 (647)
++++++++++.+. .++..+|+--.-.+.+.|.++ ++++.++++.+.. .-|...|..-.....+.+. ++
T Consensus 125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 7888888888776 457778888888888888888 9999999999864 2355566666666666665 89
Q ss_pred HHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHH-HHHHHHhC-CC----CCChhhHHHHHHHHHhcCChhHHHHHH
Q 006388 394 KGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEE-AKSFINKM-PF----PPDAIGWATLLSSCRIHGNVEIGKWAA 467 (647)
Q Consensus 394 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~ll~~~~~~~~~~~a~~~~ 467 (647)
+++++++.++.. .+-|...|+.+..++.+.|+..+ +.++..+. .. ..+...+..+...+.+.|+.++|.+++
T Consensus 204 eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 204 EELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 999999988864 34577888888889999988544 55677765 22 236788999999999999999999999
Q ss_pred HHHhc-cCCCCchhHHHHHHh
Q 006388 468 ESLLE-LDPYNPASYVLLSSI 487 (647)
Q Consensus 468 ~~~~~-~~p~~~~~~~~l~~~ 487 (647)
+.+.+ .+|.....+...++.
T Consensus 282 ~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 282 DLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHhccChHHHHHHHHHHhh
Confidence 99986 799877766655443
No 125
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.57 E-value=3.5e-06 Score=77.44 Aligned_cols=172 Identities=9% Similarity=-0.069 Sum_probs=122.7
Q ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-CChhhHHHHHHHHHHcC----ChHHHHHHHHHHH
Q 006388 294 GTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNV-RDEVSWTALVSGYAKFG----KANETIDLFEKML 368 (647)
Q Consensus 294 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~d~~~~~~li~~~~~~g----~~~~A~~~~~~m~ 368 (647)
|.+.+....+.| ++..+..|..+|...+++++|.+.|++... .++.++..|...|.. + ++++|+..|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444455555443 445556666777777777777777776653 356677777777766 5 7888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHhcCCCcC---hHHHHHHHHHHHH----cCCHHHHHHHHHh
Q 006388 369 SHGLKPDEVTLIGVLSACSR----AGLVEKGRHYFEIMVKEYGIRPI---HDHYTCMIDILSR----AGRLEEAKSFINK 437 (647)
Q Consensus 369 ~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~----~g~~~~A~~~~~~ 437 (647)
+.| +...+..+...+.. .+++++|..+|+...+ ..|. +..+..|..+|.. .+++++|.++|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 754 55566667777766 7889999999888764 2332 6778888888888 7889999999988
Q ss_pred C-CCCCChhhHHHHHHHHHhc-C-----ChhHHHHHHHHHhccCC
Q 006388 438 M-PFPPDAIGWATLLSSCRIH-G-----NVEIGKWAAESLLELDP 475 (647)
Q Consensus 438 ~-~~~p~~~~~~~ll~~~~~~-~-----~~~~a~~~~~~~~~~~p 475 (647)
. ...++...+..|...|... | +.++|...++++.+.+.
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 7 3334566777777777653 3 89999999999887764
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.55 E-value=9.2e-07 Score=77.41 Aligned_cols=127 Identities=9% Similarity=0.009 Sum_probs=94.3
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHH
Q 006388 378 TLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCR 455 (647)
Q Consensus 378 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 455 (647)
.+..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3444555666677777777777766653 1234566777777788888888888887766 2233 4778888888899
Q ss_pred hcCChhHHHHHHHHHhccCCCCchhHHHHH--HhhhhCCChhHHHHHHHHHHh
Q 006388 456 IHGNVEIGKWAAESLLELDPYNPASYVLLS--SIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 456 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~--~~~~~~g~~~~a~~~~~~m~~ 506 (647)
..|++++|...++++++..|.++..+..+. ..+...|++++|.+.++...+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999998887775444 448888999999999887653
No 127
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.54 E-value=1.1e-06 Score=72.56 Aligned_cols=114 Identities=18% Similarity=0.234 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCChhhHHHHHHHH
Q 006388 377 VTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PF-PPDAIGWATLLSSC 454 (647)
Q Consensus 377 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~ 454 (647)
..+..+...+...|++++|.++++.+.+. .+.+...+..+...+.+.|++++|..+++++ .. +.+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 34555556666666666666666666543 1234556667777777777777777777766 22 23567778888888
Q ss_pred HhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCC
Q 006388 455 RIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKG 492 (647)
Q Consensus 455 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 492 (647)
...|++++|...++++++..|.++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88888888888888888888888888888877766543
No 128
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.52 E-value=2.6e-07 Score=89.28 Aligned_cols=190 Identities=9% Similarity=-0.057 Sum_probs=119.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 006388 310 ITVSNALVTFYGKCGNIEDSHRLFNEMN---VRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPD-EVTLIGVLSA 385 (647)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a 385 (647)
...+..+...+.+.|++++|...|++.. ..+...|..+...|.+.|++++|+..+++..+. .|+ ...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 3445556666777777777777777654 335667777777777788888888888777764 343 4466677777
Q ss_pred HhcCCcHHHHHHHHHHHHHhcCCCcCh-HHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHH
Q 006388 386 CSRAGLVEKGRHYFEIMVKEYGIRPIH-DHYTCMIDILSRAGRLEEAKSFINKMPFPPDAIGWATLLSSCRIHGNVEIGK 464 (647)
Q Consensus 386 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 464 (647)
+...|++++|...|+...+. .|+. ..+...+....+.+....... .......++......+ ..+ ..|+.++|.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHH
Confidence 77888888888887776543 1211 011111111111111111111 2222333344444333 333 268889999
Q ss_pred HHHHHHhccCCCCchhHHHHHHhhhhC-CChhHHHHHHHHHHhC
Q 006388 465 WAAESLLELDPYNPASYVLLSSIYASK-GKWDHVSQLRRTMREK 507 (647)
Q Consensus 465 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 507 (647)
+.++++++.+|++......+...+... +++++|.++|.+..+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999998887777887777776 7799999999887653
No 129
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.50 E-value=1e-06 Score=73.33 Aligned_cols=115 Identities=12% Similarity=-0.015 Sum_probs=85.4
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHH
Q 006388 378 TLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCR 455 (647)
Q Consensus 378 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 455 (647)
.+..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 4555556666677777777777766653 2234566777777777788888887777766 2233 4677888888888
Q ss_pred hcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCCh
Q 006388 456 IHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKW 494 (647)
Q Consensus 456 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 494 (647)
..|++++|...++++++..|+++..+..++.++...|++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 899999999999999999998888888888888887775
No 130
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.50 E-value=6.4e-07 Score=89.01 Aligned_cols=144 Identities=15% Similarity=0.060 Sum_probs=104.9
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHH
Q 006388 340 DEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMI 419 (647)
Q Consensus 340 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 419 (647)
+...|..+...|.+.|++++|+..|++..+. .|+...+ ..+.+.+. . +-....|..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~~-~--------~~~~~~~~nla 203 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEAQKA-Q--------ALRLASHLNLA 203 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHHHHH-H--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC-----------ChHHHHHH-H--------HHHHHHHHHHH
Confidence 3455666666677777777777777766653 2221000 00111110 0 00145778888
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHH
Q 006388 420 DILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHV 497 (647)
Q Consensus 420 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 497 (647)
.+|.+.|++++|.+.++++ ...| +...|..+..++...|++++|+..++++++++|+++.++..++.++...|++++|
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999998887 3344 5788999999999999999999999999999999999999999999999999999
Q ss_pred -HHHHHHHH
Q 006388 498 -SQLRRTMR 505 (647)
Q Consensus 498 -~~~~~~m~ 505 (647)
...++.|.
T Consensus 284 ~~~~~~~~~ 292 (336)
T 1p5q_A 284 EKKLYANMF 292 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 45666664
No 131
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.46 E-value=1e-06 Score=73.23 Aligned_cols=96 Identities=13% Similarity=0.059 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhh
Q 006388 412 HDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYA 489 (647)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 489 (647)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 356677778888899999999988877 3344 57889999999999999999999999999999999999999999999
Q ss_pred hCCChhHHHHHHHHHHhC
Q 006388 490 SKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 490 ~~g~~~~a~~~~~~m~~~ 507 (647)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999999988763
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.45 E-value=1.1e-06 Score=73.52 Aligned_cols=111 Identities=9% Similarity=-0.003 Sum_probs=60.2
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhc
Q 006388 380 IGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIH 457 (647)
Q Consensus 380 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~ 457 (647)
..+...+...|++++|...|+...+. .+.+...+..+...|...|++++|.+.+++. ...| +...|..+...+...
T Consensus 20 ~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 97 (133)
T 2lni_A 20 KNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAM 97 (133)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Confidence 33333344444444444444443321 1112334444444444455555555544443 1122 355666677777777
Q ss_pred CChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCC
Q 006388 458 GNVEIGKWAAESLLELDPYNPASYVLLSSIYASKG 492 (647)
Q Consensus 458 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 492 (647)
|++++|...++++++.+|.+...+..++.++...|
T Consensus 98 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 98 KDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp TCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 77777777777777777777777777777766555
No 133
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.45 E-value=2.3e-05 Score=76.05 Aligned_cols=159 Identities=14% Similarity=-0.037 Sum_probs=119.1
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCC---Ch-----h-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHH
Q 006388 315 ALVTFYGKCGNIEDSHRLFNEMNVR---DE-----V-SWTALVSGYAKFGKANETIDLFEKMLSHGLK-PD----EVTLI 380 (647)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~~~~~---d~-----~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~ 380 (647)
..+..+...|++++|.+.+++.... +. . .+..+...+...|++++|+..|++....... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3467788899999999999886532 11 1 2334666667778999999999999884322 23 22688
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhc----CCCcC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-hhhH
Q 006388 381 GVLSACSRAGLVEKGRHYFEIMVKEY----GIRPI-HDHYTCMIDILSRAGRLEEAKSFINKM-------PFPPD-AIGW 447 (647)
Q Consensus 381 ~ll~a~~~~g~~~~a~~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~ 447 (647)
.+...|...|++++|..+|+.+.+.. +..+. ..+|..+...|.+.|++++|.+.+++. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88899999999999999999887422 12222 347888999999999999999998876 12222 6788
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHhcc
Q 006388 448 ATLLSSCRIHGN-VEIGKWAAESLLEL 473 (647)
Q Consensus 448 ~~ll~~~~~~~~-~~~a~~~~~~~~~~ 473 (647)
..+..++...|+ +++|...+++++++
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 899999999995 69999999987754
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.45 E-value=4.6e-07 Score=80.62 Aligned_cols=120 Identities=9% Similarity=0.047 Sum_probs=91.7
Q ss_pred hcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHH-HHhcCCh--h
Q 006388 387 SRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSS-CRIHGNV--E 461 (647)
Q Consensus 387 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~~~~~~--~ 461 (647)
...|++++|...++...+. .+.+...+..+...|...|++++|.+.++++ ...| +...|..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 4456777777777777654 2345677788888888888888888888776 2233 56677778877 7788888 9
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhCC
Q 006388 462 IGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREKG 508 (647)
Q Consensus 462 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 508 (647)
+|...++++++.+|.++..+..++.+|...|++++|...+++..+..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999887743
No 135
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.44 E-value=6.4e-06 Score=80.01 Aligned_cols=162 Identities=14% Similarity=-0.065 Sum_probs=117.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC--C-Ch------hhHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HH
Q 006388 312 VSNALVTFYGKCGNIEDSHRLFNEMNV--R-DE------VSWTALVSGYAKFGKANETIDLFEKMLSHGL---KPD--EV 377 (647)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~-d~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~ 377 (647)
.+...+..+...|++++|.+.+++... + .. ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444567778888999999888875431 1 11 2234455667778899999999999876321 122 34
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHH---hcCCCcC--hHHHHHHHHHHHHcCCHHHHHHHHHhC-C------CCCC-h
Q 006388 378 TLIGVLSACSRAGLVEKGRHYFEIMVK---EYGIRPI--HDHYTCMIDILSRAGRLEEAKSFINKM-P------FPPD-A 444 (647)
Q Consensus 378 t~~~ll~a~~~~g~~~~a~~~~~~~~~---~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~------~~p~-~ 444 (647)
++..+...|...|++++|..+|+...+ ..+..+. ...+..+...|.+.|++++|.+.+++. . .... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 788888899999999999999998873 2222221 258888999999999999999998876 1 1111 6
Q ss_pred hhHHHHHHHHHhcCChhHH-HHHHHHHhcc
Q 006388 445 IGWATLLSSCRIHGNVEIG-KWAAESLLEL 473 (647)
Q Consensus 445 ~~~~~ll~~~~~~~~~~~a-~~~~~~~~~~ 473 (647)
.+|..+...+...|++++| ...+++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6788899999999999999 7778877643
No 136
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.40 E-value=6.9e-07 Score=73.78 Aligned_cols=94 Identities=14% Similarity=0.007 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhC
Q 006388 414 HYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASK 491 (647)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 491 (647)
.+..+...+.+.|++++|...+++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3455677788999999999999887 3445 5888999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhC
Q 006388 492 GKWDHVSQLRRTMREK 507 (647)
Q Consensus 492 g~~~~a~~~~~~m~~~ 507 (647)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988763
No 137
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.39 E-value=1.1e-06 Score=75.72 Aligned_cols=98 Identities=9% Similarity=-0.043 Sum_probs=69.3
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHH
Q 006388 378 TLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCR 455 (647)
Q Consensus 378 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 455 (647)
.+..+...+.+.|++++|...|+...+. -+.+...|..+..+|.+.|++++|.+.|+++ ...| ++..|..+..++.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 4555556666677777777777766643 1234566777777777777777777777776 3344 3667788888888
Q ss_pred hcCChhHHHHHHHHHhccCCCC
Q 006388 456 IHGNVEIGKWAAESLLELDPYN 477 (647)
Q Consensus 456 ~~~~~~~a~~~~~~~~~~~p~~ 477 (647)
..|++++|+..+++++++.|++
T Consensus 116 ~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCH
T ss_pred HcCCHHHHHHHHHHHHHhCCCH
Confidence 8888888888888888888754
No 138
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.38 E-value=1.5e-06 Score=69.99 Aligned_cols=98 Identities=11% Similarity=0.024 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCC--CchhHHHHHHh
Q 006388 412 HDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPY--NPASYVLLSSI 487 (647)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 487 (647)
...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++..|. ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 345566777777788888888887776 2223 5677888888888899999999999999999998 88899999999
Q ss_pred hhhC-CChhHHHHHHHHHHhCCC
Q 006388 488 YASK-GKWDHVSQLRRTMREKGV 509 (647)
Q Consensus 488 ~~~~-g~~~~a~~~~~~m~~~g~ 509 (647)
|... |++++|.+.+++..+..-
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 9999 999999999998876543
No 139
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.38 E-value=6.2e-07 Score=77.15 Aligned_cols=107 Identities=10% Similarity=-0.047 Sum_probs=79.8
Q ss_pred CCCHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHH
Q 006388 373 KPDEV-TLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWAT 449 (647)
Q Consensus 373 ~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 449 (647)
.|+.. .+..+...+...|++++|...|+..... -+.+...|..+..+|...|++++|.+.|++. ...| +...|..
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 44333 5555666777788888888888877653 2335667777888888888888888888876 3334 4677888
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCchhH
Q 006388 450 LLSSCRIHGNVEIGKWAAESLLELDPYNPASY 481 (647)
Q Consensus 450 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 481 (647)
+..++...|++++|+..+++++++.|+++...
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 88888999999999999999999988776553
No 140
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.37 E-value=1.4e-06 Score=76.45 Aligned_cols=96 Identities=13% Similarity=0.071 Sum_probs=69.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhh
Q 006388 411 IHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIY 488 (647)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 488 (647)
+...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3455666667777777777777777665 2333 4667777777777777777777777777777777777777777777
Q ss_pred hhCCChhHHHHHHHHHHh
Q 006388 489 ASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 489 ~~~g~~~~a~~~~~~m~~ 506 (647)
...|++++|.+.+++..+
T Consensus 90 ~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 777888777777777765
No 141
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.37 E-value=3e-06 Score=71.46 Aligned_cols=98 Identities=13% Similarity=0.023 Sum_probs=84.8
Q ss_pred cChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHh
Q 006388 410 PIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSI 487 (647)
Q Consensus 410 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 487 (647)
.+...+..+...+...|++++|...|++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 45677888888888889999998888876 3334 477888999999999999999999999999999999999999999
Q ss_pred hhhCCChhHHHHHHHHHHhC
Q 006388 488 YASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 488 ~~~~g~~~~a~~~~~~m~~~ 507 (647)
|...|++++|...+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999988763
No 142
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.37 E-value=5.9e-06 Score=78.04 Aligned_cols=181 Identities=10% Similarity=-0.030 Sum_probs=118.7
Q ss_pred hcCCHHHHHHHHhhcC---CCChhhHHHH-------HHHHHHcCChHHHHHHHHHHHHCCCCCCH---------------
Q 006388 322 KCGNIEDSHRLFNEMN---VRDEVSWTAL-------VSGYAKFGKANETIDLFEKMLSHGLKPDE--------------- 376 (647)
Q Consensus 322 ~~g~~~~A~~~~~~~~---~~d~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------------- 376 (647)
..++.+.|.+.|.++. ......|+.+ ...+...++..+++..+.+-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 4677777777777765 2245567766 4555555555555555554433 23321
Q ss_pred -------HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC----hh
Q 006388 377 -------VTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKMPFPPD----AI 445 (647)
Q Consensus 377 -------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~----~~ 445 (647)
.....+...+...|++++|.+.|+.+.. ..|+......+...+.+.|++++|+..|+.....|+ ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1223345566777888888888876653 234433555666677888888888888876643333 23
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhccC--CC-CchhHHHHHHhhhhCCChhHHHHHHHHHHhC
Q 006388 446 GWATLLSSCRIHGNVEIGKWAAESLLELD--PY-NPASYVLLSSIYASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 446 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 507 (647)
.+..+..++...|++++|+..+++..... |. .+.....++.++.+.|+.++|..+|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 66777778888888888888888877433 43 3456777888888888888888888888763
No 143
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.35 E-value=1.3e-06 Score=72.88 Aligned_cols=94 Identities=7% Similarity=-0.031 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc-------hhHHH
Q 006388 413 DHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNP-------ASYVL 483 (647)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~-------~~~~~ 483 (647)
..+..+...+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..++++++++|++. .+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45667888899999999999999887 4455 478899999999999999999999999999988654 36778
Q ss_pred HHHhhhhCCChhHHHHHHHHHHh
Q 006388 484 LSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 484 l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
++.+|...|++++|.+.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88999999999999999998765
No 144
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.34 E-value=5.4e-06 Score=75.25 Aligned_cols=59 Identities=10% Similarity=0.014 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCC--CC----chhHHHHHHhhhhCCChhHHHHHHHHHH
Q 006388 447 WATLLSSCRIHGNVEIGKWAAESLLELDP--YN----PASYVLLSSIYASKGKWDHVSQLRRTMR 505 (647)
Q Consensus 447 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p--~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 505 (647)
+..+...+...|++++|...++++++..+ .+ ..++..++.+|...|++++|.+.+++..
T Consensus 110 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 110 AYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 44444445555555555555555443211 11 1224556666666666666666665554
No 145
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.34 E-value=2.6e-06 Score=77.34 Aligned_cols=168 Identities=11% Similarity=-0.023 Sum_probs=102.2
Q ss_pred HHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHH
Q 006388 320 YGKCGNIEDSHRLFNEMNVR---DEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGR 396 (647)
Q Consensus 320 ~~~~g~~~~A~~~~~~~~~~---d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 396 (647)
....|+++++.+.++.-... ....|..+...+...|++++|+..|++..+. .|+...+... ....
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~-- 81 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLD-- 81 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHH--
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHH--
Confidence 33445555555555432211 3445666677777778888888877777763 2221100000 0000
Q ss_pred HHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 006388 397 HYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELD 474 (647)
Q Consensus 397 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 474 (647)
-.. ......|..+..+|.+.|++++|...+++. ...| +...|..+..++...|++++|...++++++++
T Consensus 82 -----~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 82 -----KKK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp -----HHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred -----HHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 000 001356777888888899999999888877 3334 57788899999999999999999999999999
Q ss_pred CCCchhHHHHHHhhhhCCChhHHH-HHHHHHHhCC
Q 006388 475 PYNPASYVLLSSIYASKGKWDHVS-QLRRTMREKG 508 (647)
Q Consensus 475 p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~g 508 (647)
|.++..+..+..++...|+.+++. ..+..|...|
T Consensus 153 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 153 PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999988888877 5566665443
No 146
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.32 E-value=0.00025 Score=69.31 Aligned_cols=228 Identities=9% Similarity=-0.034 Sum_probs=136.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCCCchhhHHHHHHHH
Q 006388 9 WNLLISGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRR-CVDLGRQIHGHILKFGFGSYVFVGSPLVDMY 87 (647)
Q Consensus 9 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 87 (647)
|+.+-....+.+..++|++++++++... |.+...|+.--..+...+ .++++....+.++... +.+..+++.-..++
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 4444444555666678888888888776 556666777666666666 4788888888887765 45666666666665
Q ss_pred Hhc-C-ChHHHHHHhccCCCCCchHHHHHHHHHHhcCChHHHHHHhhcCCCCCeehHHHHHHHHHhCCChh--------H
Q 006388 88 AKL-G-LIYDAKRGFDELPEKNIVMYNTMITGLLRRGLVEESRRLFRGMKDKDSISWTTMITGLMQNGLER--------E 157 (647)
Q Consensus 88 ~~~-g-~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~ 157 (647)
.+. + +++++..+++.+.+.|. +|..+|+.-.-.+.+.|.++ +
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dp----------------------------kNy~AW~~R~wvl~~l~~~~~~~~~~~~e 185 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDP----------------------------KNYHTWAYLHWLYSHFSTLGRISEAQWGS 185 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCT----------------------------TCHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHhCC----------------------------CCHHHHHHHHHHHHHhccccccchhhHHH
Confidence 555 5 66777777776664322 13333333333333333333 6
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHhcCCC-------hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH-----
Q 006388 158 AIDLFREMRLEGLAMDQFTFGSVLTACGGLLA-------LEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSI----- 225 (647)
Q Consensus 158 A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~-------~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~----- 225 (647)
+++.+.++.+..+. |...|+.....+.+.+. ++++.+....+++.. +.|...|+.+-..+.+.|+-
T Consensus 186 ELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~ 263 (349)
T 3q7a_A 186 ELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPIL 263 (349)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCccccc
Confidence 67777777665432 55556555555555554 456666666666654 45666676666666665542
Q ss_pred ---------------HHHHHHHhcCCC---------CChhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006388 226 ---------------KYAESVFRTMAW---------KNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRN 269 (647)
Q Consensus 226 ---------------~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 269 (647)
........++.. +.+.++..|+..|...|+.++|.++++.+.+.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 264 PAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 223333333321 34567778888888888888888888887643
No 147
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.31 E-value=3.8e-06 Score=70.13 Aligned_cols=99 Identities=9% Similarity=0.040 Sum_probs=89.5
Q ss_pred CcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHH
Q 006388 409 RPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSS 486 (647)
Q Consensus 409 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 486 (647)
+.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|.++..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345678888999999999999999999987 4455 57889999999999999999999999999999999999999999
Q ss_pred hhhhCCChhHHHHHHHHHHhC
Q 006388 487 IYASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 487 ~~~~~g~~~~a~~~~~~m~~~ 507 (647)
+|...|++++|.+.+++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999998764
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.31 E-value=4.6e-06 Score=67.82 Aligned_cols=94 Identities=7% Similarity=0.089 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhh
Q 006388 413 DHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYAS 490 (647)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 490 (647)
..+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|.++..+..++.+|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34555555666666666666666655 2222 455666666666666666667666666666666666666666677777
Q ss_pred CCChhHHHHHHHHHHh
Q 006388 491 KGKWDHVSQLRRTMRE 506 (647)
Q Consensus 491 ~g~~~~a~~~~~~m~~ 506 (647)
.|++++|.+.+++..+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 7777777766666554
No 149
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.30 E-value=4.2e-06 Score=68.81 Aligned_cols=96 Identities=21% Similarity=0.336 Sum_probs=87.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhh
Q 006388 412 HDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYA 489 (647)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 489 (647)
...+..+...+.+.|++++|.++++++ ...| +..+|..+...+...|++++|...++++.+..|.++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888899999999999999999987 2233 57889999999999999999999999999999999999999999999
Q ss_pred hCCChhHHHHHHHHHHhC
Q 006388 490 SKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 490 ~~g~~~~a~~~~~~m~~~ 507 (647)
..|++++|.+.++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998764
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.30 E-value=8.9e-06 Score=66.06 Aligned_cols=109 Identities=16% Similarity=0.096 Sum_probs=77.2
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHH
Q 006388 378 TLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCR 455 (647)
Q Consensus 378 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 455 (647)
.+..+...+...|++++|...|+..... .+.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4455555666667777777777766543 1234566777777777778888887777766 2233 4677888888888
Q ss_pred hcCChhHHHHHHHHHhccCCCCchhHHHHHHhh
Q 006388 456 IHGNVEIGKWAAESLLELDPYNPASYVLLSSIY 488 (647)
Q Consensus 456 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 488 (647)
..|++++|...++++++.+|+++..+..++.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 888999999999999888888877776665543
No 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.30 E-value=2.6e-06 Score=72.57 Aligned_cols=104 Identities=13% Similarity=-0.046 Sum_probs=75.7
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHH
Q 006388 378 TLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCR 455 (647)
Q Consensus 378 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 455 (647)
.+..+...+.+.|++++|...|+..... -+.+...|..+..+|.+.|++++|...|++. ...| +...|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4444555667777777777777777653 2335567777778888888888888888776 3334 4667778888888
Q ss_pred hcCChhHHHHHHHHHhccCCCCchhHHH
Q 006388 456 IHGNVEIGKWAAESLLELDPYNPASYVL 483 (647)
Q Consensus 456 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 483 (647)
..|++++|...+++++++.|+++.....
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~ 125 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEAL 125 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHH
Confidence 8899999999999988888877665544
No 152
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.29 E-value=1.5e-05 Score=75.32 Aligned_cols=182 Identities=6% Similarity=-0.119 Sum_probs=98.8
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCCcchHHHHH-------HHHhCCCChHHHHHHHHHHHHhCCCCc--------------
Q 006388 18 SHGSVNDAVKVYNLMLKDGLGNLSRITFSTML-------IMSSSRRCVDLGRQIHGHILKFGFGSY-------------- 76 (647)
Q Consensus 18 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll-------~~~~~~~~~~~a~~~~~~~~~~g~~~~-------------- 76 (647)
..+++..|++.|.+..+.. |.....|..++ .++.+.+...++...+... .++.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~--l~l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGS--VQISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHT--TTCCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHH--hcCChhhhhhhhccCCcccc
Confidence 5789999999999999876 56666777663 2222222222222222221 222222
Q ss_pred --------hhhHHHHHHHHHhcCChHHHHHHhccCCC--CCchHHHHHHHHHHhcCChHHHHHHhhcCCCCC-----eeh
Q 006388 77 --------VFVGSPLVDMYAKLGLIYDAKRGFDELPE--KNIVMYNTMITGLLRRGLVEESRRLFRGMKDKD-----SIS 141 (647)
Q Consensus 77 --------~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~ 141 (647)
..+.-.+..++...|++++|.++|+.+.. |+....-.+...+.+.+++++|+..|+...... ...
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a 173 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAA 173 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHH
Confidence 11223455666677777777777777764 322244444445666666666666666444321 124
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC--hhhHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 006388 142 WTTMITGLMQNGLEREAIDLFREMRLEGLAMD--QFTFGSVLTACGGLLALEEGKQIHAFIIRN 203 (647)
Q Consensus 142 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 203 (647)
+..+-.++.+.|++++|+..|++.......|. .........++.+.|+.++|...++.+...
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 55555666666666666666666553222133 113334444455566666666666666554
No 153
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=1.7e-05 Score=67.58 Aligned_cols=110 Identities=10% Similarity=-0.015 Sum_probs=69.9
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcC----hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHH
Q 006388 378 TLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPI----HDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLL 451 (647)
Q Consensus 378 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll 451 (647)
.+..+...+...|++++|...|+...+ ..|+ ...+..+...|...|++++|.+.+++. ...| +...|..+.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 444444555555555555555555542 2333 455566666666677777777666655 2233 466777777
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhh
Q 006388 452 SSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYAS 490 (647)
Q Consensus 452 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 490 (647)
.++...|++++|...++++++++|+++..+..+..+..+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 778888888888888888888888777776666655443
No 154
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.26 E-value=6.1e-06 Score=73.22 Aligned_cols=127 Identities=7% Similarity=0.053 Sum_probs=96.7
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHH-HHHcCCH--
Q 006388 352 AKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDI-LSRAGRL-- 428 (647)
Q Consensus 352 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~-- 428 (647)
...|++++|+..+++..+.. +.+...+..+...+...|++++|...|+...+.. +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 45678888888888877642 3355677888888888999999999998887642 2356677788888 7788998
Q ss_pred HHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhH
Q 006388 429 EEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASY 481 (647)
Q Consensus 429 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 481 (647)
++|...++++ ...| +...|..+...+...|++++|...++++++..|+++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999999887 3344 477888899999999999999999999999999875443
No 155
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=7.3e-06 Score=69.93 Aligned_cols=98 Identities=10% Similarity=-0.027 Sum_probs=89.5
Q ss_pred cChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHH
Q 006388 410 PIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPPD----AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLL 484 (647)
Q Consensus 410 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 484 (647)
.+...+..+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|+..++++++..|+++..+..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 35678888999999999999999999987 56676 67888999999999999999999999999999999999999
Q ss_pred HHhhhhCCChhHHHHHHHHHHhC
Q 006388 485 SSIYASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 485 ~~~~~~~g~~~~a~~~~~~m~~~ 507 (647)
+.+|...|++++|.+.+++..+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999999999999999998764
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.25 E-value=5.6e-06 Score=68.67 Aligned_cols=108 Identities=10% Similarity=-0.092 Sum_probs=73.7
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHH
Q 006388 378 TLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCR 455 (647)
Q Consensus 378 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 455 (647)
.+......+.+.|++++|...|+...+. .+.+...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3444555566666777777776666543 1234566777777777777777777777766 3334 3667788888888
Q ss_pred hcCChhHHHHHHHHHhccC------CCCchhHHHHHHh
Q 006388 456 IHGNVEIGKWAAESLLELD------PYNPASYVLLSSI 487 (647)
Q Consensus 456 ~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~ 487 (647)
..|++++|...++++++++ |.++.....+..+
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 8888888888888888888 7666666555544
No 157
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.24 E-value=2e-05 Score=68.68 Aligned_cols=127 Identities=9% Similarity=-0.028 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHH
Q 006388 343 SWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDIL 422 (647)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 422 (647)
.|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++...+. .+.+...+..+...+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 34445555556666666666666655531 223445555556666666666666666666543 123445566666666
Q ss_pred HHcCCHHHHHHHHHhC-CCCC-ChhhHH--HHHHHHHhcCChhHHHHHHHHHhc
Q 006388 423 SRAGRLEEAKSFINKM-PFPP-DAIGWA--TLLSSCRIHGNVEIGKWAAESLLE 472 (647)
Q Consensus 423 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~ 472 (647)
...|++++|.+.++++ ...| +...+. .++..+...|++++|...+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 6666666666666655 2222 233332 223335556677777776665543
No 158
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.23 E-value=7.8e-06 Score=71.36 Aligned_cols=64 Identities=9% Similarity=0.035 Sum_probs=58.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhC
Q 006388 444 AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 444 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 507 (647)
...|..+..++...|++++|+..++++++++|.++.+|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4678888889999999999999999999999999999999999999999999999999987763
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.22 E-value=6.6e-06 Score=72.01 Aligned_cols=107 Identities=13% Similarity=-0.034 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHH
Q 006388 377 VTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSC 454 (647)
Q Consensus 377 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 454 (647)
..+..+...+...|++++|...|+...+.. +.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 355566667777777777777777776531 235677778888888888888888888776 3344 477889999999
Q ss_pred HhcCChhHHHHHHHHHhccCCCCchhHHHHH
Q 006388 455 RIHGNVEIGKWAAESLLELDPYNPASYVLLS 485 (647)
Q Consensus 455 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 485 (647)
...|++++|...++++++++|+++..+...+
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 9999999999999999999999887665443
No 160
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.22 E-value=2e-05 Score=71.35 Aligned_cols=47 Identities=15% Similarity=0.022 Sum_probs=23.8
Q ss_pred cCCHHHHHH---HHhcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006388 222 CKSIKYAES---VFRTMAWKNVVSWTAMLVGYGQNGCSEEAVKIFCNMQR 268 (647)
Q Consensus 222 ~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 268 (647)
.|++++|.+ .+..-+.....+++.+...+...|++++|+..|++...
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 54 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQ 54 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 455555555 44332223344555556666666666666666655543
No 161
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.21 E-value=6.7e-06 Score=68.21 Aligned_cols=97 Identities=15% Similarity=0.125 Sum_probs=87.6
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhh
Q 006388 411 IHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIY 488 (647)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 488 (647)
+...+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|.++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4567888889999999999999999987 3334 5788999999999999999999999999999999999999999999
Q ss_pred hhCCChhHHHHHHHHHHhC
Q 006388 489 ASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 489 ~~~g~~~~a~~~~~~m~~~ 507 (647)
...|++++|.+.+++..+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999998764
No 162
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.21 E-value=1.5e-05 Score=76.79 Aligned_cols=187 Identities=10% Similarity=-0.038 Sum_probs=109.8
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHc
Q 006388 278 LGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNV---RDEVSWTALVSGYAKF 354 (647)
Q Consensus 278 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~d~~~~~~li~~~~~~ 354 (647)
+..+...+...|++++|...+..+++.. +.+...+..+...|.+.|++++|.+.+++... .+...|..+..+|...
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM 85 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3333344444444555555444444442 33555666777778888888888888877653 3566788888888999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHH
Q 006388 355 GKANETIDLFEKMLSHGLKPDEV-TLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKS 433 (647)
Q Consensus 355 g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 433 (647)
|++++|+..|++..+. .|+.. .+...+.... ...++... ..... ....++......+...+ .|+.++|.+
T Consensus 86 g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~---~~~~~~~~-~~~~~-~~~~~~~~i~~~l~~l~--~~~~~~A~~ 156 (281)
T 2c2l_A 86 ESYDEAIANLQRAYSL--AKEQRLNFGDDIPSAL---RIAKKKRW-NSIEE-RRIHQESELHSYLTRLI--AAERERELE 156 (281)
T ss_dssp TCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHH---HHHHHHHH-HHHHH-TCCCCCCHHHHHHHHHH--HHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHh--CccchhhHHHHHHHHH---HHHHHHHH-HHHHH-HHHhhhHHHHHHHHHHH--HHHHHHHHH
Confidence 9999999999887763 22210 1111111111 11112222 22222 24555555555554443 689999999
Q ss_pred HHHhC-CCCCCh-hhHHHHHHHHHhc-CChhHHHHHHHHHhccC
Q 006388 434 FINKM-PFPPDA-IGWATLLSSCRIH-GNVEIGKWAAESLLELD 474 (647)
Q Consensus 434 ~~~~~-~~~p~~-~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~ 474 (647)
.+++. ...|+. .....+...+... +.++++..+|+++.+..
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 157 ECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp TTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 88877 556664 3344444444444 66888999998887643
No 163
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.19 E-value=5e-06 Score=70.83 Aligned_cols=92 Identities=12% Similarity=0.009 Sum_probs=73.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-------------hhhHHHHHHHHHhcCChhHHHHHHHHHhcc-------
Q 006388 415 YTCMIDILSRAGRLEEAKSFINKM-PFPPD-------------AIGWATLLSSCRIHGNVEIGKWAAESLLEL------- 473 (647)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------- 473 (647)
+......+.+.|++++|.+.|++. .+.|+ ...|..+..++...|++++|+..+++++++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 344555566667777777766665 22222 238888999999999999999999999998
Q ss_pred CCCCchhH----HHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 474 DPYNPASY----VLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 474 ~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
+|++...| ...+.++...|++++|...|++..+
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999 9999999999999999999998865
No 164
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.17 E-value=1.1e-05 Score=83.86 Aligned_cols=145 Identities=16% Similarity=0.108 Sum_probs=99.1
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHH
Q 006388 341 EVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMID 420 (647)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 420 (647)
...|..+...|.+.|++++|+..|++.++. .|+...+ . -+...+ .. .-....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~-~~--------~~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA-SE--------SFLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH-HH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH-HH--------HHHHHHHHHHHH
Confidence 445666666677777777777777766652 1221000 0 000000 00 011457888888
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHH
Q 006388 421 ILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVS 498 (647)
Q Consensus 421 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 498 (647)
+|.+.|++++|+..++++ ...| +...|..+..++...|++++|+..++++++++|++..++..++.++...|+++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 3344 57889999999999999999999999999999999999999999999999998887
Q ss_pred H-HHHHHHhC
Q 006388 499 Q-LRRTMREK 507 (647)
Q Consensus 499 ~-~~~~m~~~ 507 (647)
+ .+++|..+
T Consensus 406 ~~~~~~~f~k 415 (457)
T 1kt0_A 406 RRIYANMFKK 415 (457)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHHhh
Confidence 5 45555443
No 165
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.16 E-value=0.0011 Score=64.82 Aligned_cols=174 Identities=13% Similarity=0.067 Sum_probs=92.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhc-C
Q 006388 248 VGYGQNGCSEEAVKIFCNMQRNGIEPDD-FTLGSVISSCANLA-SLEEGTQFHGRSLVTGLISFITVSNALVTFYGKC-G 324 (647)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g 324 (647)
......+..++|++++.++... .|+. ..++.--.++...+ .++++..++..++... +.+..+|+.-...+.+. +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcC
Confidence 3334445556677777777664 3443 33444444444445 3666666666666544 33444555444444444 4
Q ss_pred -CHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCc-
Q 006388 325 -NIEDSHRLFNEMNVR---DEVSWTALVSGYAKFGKAN--------ETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGL- 391 (647)
Q Consensus 325 -~~~~A~~~~~~~~~~---d~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~- 391 (647)
++++++++++.+... |..+|+--.-.+.+.|.++ ++++.++++.+.. .-|...|+.....+.+.+.
T Consensus 139 ~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTC
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccc
Confidence 566777777766633 4455555444444444444 6667777766642 2244455555555555543
Q ss_pred ------HHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCC
Q 006388 392 ------VEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGR 427 (647)
Q Consensus 392 ------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 427 (647)
+++++++++.++.. .+-|...|+.+-.++.+.|+
T Consensus 218 ~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 45666666655542 22344555555555555443
No 166
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.13 E-value=1.1e-05 Score=67.15 Aligned_cols=91 Identities=13% Similarity=0.105 Sum_probs=68.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCC-h---hhHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---chhHHHHHHhh
Q 006388 417 CMIDILSRAGRLEEAKSFINKM-PFPPD-A---IGWATLLSSCRIHGNVEIGKWAAESLLELDPYN---PASYVLLSSIY 488 (647)
Q Consensus 417 ~li~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~ 488 (647)
.+...+.+.|++++|.+.|++. ...|+ . ..|..+..++...|++++|...++++++..|++ +.++..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3455666777777777777765 22233 2 467777778888888888888888888888877 66688888888
Q ss_pred hhCCChhHHHHHHHHHHhC
Q 006388 489 ASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 489 ~~~g~~~~a~~~~~~m~~~ 507 (647)
...|++++|...+++..+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8888888888888887763
No 167
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=3.3e-05 Score=79.58 Aligned_cols=164 Identities=7% Similarity=-0.080 Sum_probs=116.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHH----HHHHHHHHHhcCCcHHHHHHHHHHHHHh---cCCCc-ChH
Q 006388 343 SWTALVSGYAKFGKANETIDLFEKMLSH-GLKPDEV----TLIGVLSACSRAGLVEKGRHYFEIMVKE---YGIRP-IHD 413 (647)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~ 413 (647)
++..+...|...|++++|.+.+.++... +..++.. +.+.+-..+...|..+++..+++..... .+..+ ...
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 3566778888888888888888876542 1112221 2222333445678899998888776542 12222 246
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-----C--CCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHhccC---CCC----c
Q 006388 414 HYTCMIDILSRAGRLEEAKSFINKM-----P--FPPD-AIGWATLLSSCRIHGNVEIGKWAAESLLELD---PYN----P 478 (647)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~~-----~--~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---p~~----~ 478 (647)
.+..+...|...|++++|..++++. + .+|. ..++..++..|...|++++|...++++.... +.+ .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 7888999999999999999998765 1 1222 5678888899999999999999999887653 222 2
Q ss_pred hhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 479 ASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 479 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
..+..++..+...|++++|...+.+..+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4567788889999999999998877753
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.12 E-value=1.2e-05 Score=67.68 Aligned_cols=100 Identities=7% Similarity=-0.132 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHH
Q 006388 375 DEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLS 452 (647)
Q Consensus 375 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~ 452 (647)
+...+..+...+...|++++|...|+...+. .+.+...+..+...|...|++++|...+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 3445556666666666666666666666543 1234566666777777777777777777665 2233 4667777777
Q ss_pred HHHhcCChhHHHHHHHHHhccCCC
Q 006388 453 SCRIHGNVEIGKWAAESLLELDPY 476 (647)
Q Consensus 453 ~~~~~~~~~~a~~~~~~~~~~~p~ 476 (647)
.+...|++++|...+++++++.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 788888888888888888877765
No 169
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.12 E-value=5.1e-06 Score=86.67 Aligned_cols=114 Identities=9% Similarity=0.007 Sum_probs=57.4
Q ss_pred hcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHH
Q 006388 387 SRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGK 464 (647)
Q Consensus 387 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~ 464 (647)
.+.|++++|.+.|++..+. .+.+...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++...|++++|+
T Consensus 17 ~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3445555555555554432 1122445555555555555555555555544 2233 2445555555555556666666
Q ss_pred HHHHHHhccCCCCchhHHHHHHh--hhhCCChhHHHHHHH
Q 006388 465 WAAESLLELDPYNPASYVLLSSI--YASKGKWDHVSQLRR 502 (647)
Q Consensus 465 ~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 502 (647)
..++++++++|+++..+..++.+ +.+.|++++|.+.++
T Consensus 95 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66666655555555555555555 555555555555554
No 170
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.12 E-value=1.7e-05 Score=82.61 Aligned_cols=112 Identities=10% Similarity=-0.022 Sum_probs=45.9
Q ss_pred HcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHH
Q 006388 353 KFGKANETIDLFEKMLSHGLKPD-EVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEA 431 (647)
Q Consensus 353 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 431 (647)
+.|++++|++.|++..+. .|+ ...+..+..++.+.|++++|.+.+++..+. .+.+...|..+..+|.+.|++++|
T Consensus 18 ~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 344444444444444442 222 334444444444455555555554444431 122334444445555555555555
Q ss_pred HHHHHhC-CCCCC-hhhHHHHHHH--HHhcCChhHHHHHHH
Q 006388 432 KSFINKM-PFPPD-AIGWATLLSS--CRIHGNVEIGKWAAE 468 (647)
Q Consensus 432 ~~~~~~~-~~~p~-~~~~~~ll~~--~~~~~~~~~a~~~~~ 468 (647)
.+.++++ ...|+ ...+..+..+ +...|++++|+..++
T Consensus 94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555443 11221 2233333333 444455555555555
No 171
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.11 E-value=0.00046 Score=67.03 Aligned_cols=78 Identities=10% Similarity=0.040 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcC--CHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCC-hHHHHHHHH
Q 006388 292 EEGTQFHGRSLVTGLISFITVSNALVTFYGKCG--NIEDSHRLFNEMN---VRDEVSWTALVSGYAKFGK-ANETIDLFE 365 (647)
Q Consensus 292 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~-~~~A~~~~~ 365 (647)
+++..++..+.... +-+..+|+.-...+.+.| .+++++.+++.+. .+|..+|+--.-.+...|. ++++++.+.
T Consensus 91 ~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 34444444444432 223344443333344444 2555555555544 3344555555555555555 355666666
Q ss_pred HHHHC
Q 006388 366 KMLSH 370 (647)
Q Consensus 366 ~m~~~ 370 (647)
++.+.
T Consensus 170 ~~I~~ 174 (331)
T 3dss_A 170 SLITR 174 (331)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65553
No 172
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.07 E-value=2.3e-06 Score=70.11 Aligned_cols=82 Identities=17% Similarity=0.146 Sum_probs=52.8
Q ss_pred cCCHHHHHHHHHhC-CC---CCC-hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHH
Q 006388 425 AGRLEEAKSFINKM-PF---PPD-AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQ 499 (647)
Q Consensus 425 ~g~~~~A~~~~~~~-~~---~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 499 (647)
.|++++|+..|++. .. .|+ ...|..+...+...|++++|+..++++++.+|+++..+..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45556666666555 22 232 45666666777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHh
Q 006388 500 LRRTMRE 506 (647)
Q Consensus 500 ~~~~m~~ 506 (647)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.07 E-value=1.2e-05 Score=66.64 Aligned_cols=96 Identities=10% Similarity=0.085 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-------chhHH
Q 006388 412 HDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYN-------PASYV 482 (647)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~ 482 (647)
...+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++++..|.+ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345677778888888888888888876 2233 57788888888999999999999999999887765 78899
Q ss_pred HHHHhhhhCCChhHHHHHHHHHHhC
Q 006388 483 LLSSIYASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 483 ~l~~~~~~~g~~~~a~~~~~~m~~~ 507 (647)
.++.+|...|++++|.+.+++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999998774
No 174
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.06 E-value=2.3e-05 Score=77.61 Aligned_cols=112 Identities=17% Similarity=0.106 Sum_probs=62.1
Q ss_pred CChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC--CC-C---------------hhhHHHHHHH
Q 006388 289 ASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMN--VR-D---------------EVSWTALVSG 350 (647)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-d---------------~~~~~~li~~ 350 (647)
++++.|...+....+.. +.+...+..+...|.+.|++++|...|++.. .| + ...|..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 44444544444333221 2356778889999999999999999999865 22 2 2445555555
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 006388 351 YAKFGKANETIDLFEKMLSHGLKP-DEVTLIGVLSACSRAGLVEKGRHYFEIMV 403 (647)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 403 (647)
|.+.|++++|+..|++.++. .| +...+..+..++...|++++|...|+...
T Consensus 206 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 257 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVL 257 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555555555555442 22 22344444444444444444444444443
No 175
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.05 E-value=0.00076 Score=65.51 Aligned_cols=178 Identities=9% Similarity=0.041 Sum_probs=133.1
Q ss_pred HHHHHHHHhhcC---CCChhhHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCc-HHHHHHHH
Q 006388 326 IEDSHRLFNEMN---VRDEVSWTALVSGYAKFGK--ANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGL-VEKGRHYF 399 (647)
Q Consensus 326 ~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~ 399 (647)
+++++.+++.+. .++..+|+.-...+...|+ +++++.+++++.+.. +-|...|+.-...+.+.|. ++++++++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 566777777665 4578889888888888884 899999999999863 3356677776666777777 69999999
Q ss_pred HHHHHhcCCCcChHHHHHHHHHHHHc--------------CCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhc------
Q 006388 400 EIMVKEYGIRPIHDHYTCMIDILSRA--------------GRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIH------ 457 (647)
Q Consensus 400 ~~~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~------ 457 (647)
+.+++. .+-+...|+....++.+. +.++++++.+.+. ...| |...|+-+-..+...
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 999875 244667777777666665 4588999998877 3344 688888776666555
Q ss_pred -----CChhHHHHHHHHHhccCCCCchhHHHHHHh---hhhCCChhHHHHHHHHHHh
Q 006388 458 -----GNVEIGKWAAESLLELDPYNPASYVLLSSI---YASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 458 -----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~---~~~~g~~~~a~~~~~~m~~ 506 (647)
+.++++++.++++++++|++...+..++.. ....|..++....+.++.+
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 457899999999999999986665554432 2346778888888888876
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.04 E-value=1.8e-05 Score=65.17 Aligned_cols=96 Identities=13% Similarity=0.008 Sum_probs=65.5
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcC
Q 006388 381 GVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHG 458 (647)
Q Consensus 381 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~ 458 (647)
.+...+.+.|++++|...|+...+. -+.+...|..+..++.+.|++++|+..+++. ...| +...|..+..++...|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3445566677777777777777653 1235567777777788888888888887776 3445 4667888888888888
Q ss_pred ChhHHHHHHHHHhccCCCCc
Q 006388 459 NVEIGKWAAESLLELDPYNP 478 (647)
Q Consensus 459 ~~~~a~~~~~~~~~~~p~~~ 478 (647)
++++|+..++++++.+|.++
T Consensus 100 ~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHHhCcCCC
Confidence 88888888888888888653
No 177
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.02 E-value=2.5e-05 Score=64.89 Aligned_cols=100 Identities=9% Similarity=-0.048 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHH
Q 006388 343 SWTALVSGYAKFGKANETIDLFEKMLSHGLKPD-EVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDI 421 (647)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 421 (647)
+|..+...+.+.|++++|+..|++.++. .|+ ...|..+..+|...|++++|++.++..++. .|+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~---~~~---------- 74 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV---GRE---------- 74 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHH----------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh---Ccc----------
Confidence 4455555555555555555555555542 233 234444555555555555555555544421 110
Q ss_pred HHHcCCHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 006388 422 LSRAGRLEEAKSFINKMPFPPD----AIGWATLLSSCRIHGNVEIGKWAAESLLELDP 475 (647)
Q Consensus 422 ~~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 475 (647)
..++ ..+|..+..++...|++++|+..++++++..|
T Consensus 75 ------------------~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 75 ------------------TRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp ------------------TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred ------------------cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 0011 12455566666667777777777777766665
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.01 E-value=3.1e-05 Score=66.84 Aligned_cols=93 Identities=16% Similarity=0.121 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHhccCC------CCch
Q 006388 414 HYTCMIDILSRAGRLEEAKSFINKM----PFPPD----AIGWATLLSSCRIHGNVEIGKWAAESLLELDP------YNPA 479 (647)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p------~~~~ 479 (647)
.+..+...+...|++++|.+.+++. +..++ ...+..+...+...|++++|...++++++..+ ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4445555555566666665555543 10111 34556666667777777777777777665421 1245
Q ss_pred hHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 480 SYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 480 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
.+..++.+|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 677888888888999999888887654
No 179
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.01 E-value=4.5e-05 Score=63.08 Aligned_cols=106 Identities=8% Similarity=-0.043 Sum_probs=56.4
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC----C-CCCC----hhhHHHH
Q 006388 380 IGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM----P-FPPD----AIGWATL 450 (647)
Q Consensus 380 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~-~~p~----~~~~~~l 450 (647)
..+...+...|++++|...|+...+. .+.+...+..+...|...|++++|...++++ + ..++ ..+|..+
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 33344444445555555555444432 1223344555555555555555555555544 1 1112 4556666
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhh
Q 006388 451 LSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIY 488 (647)
Q Consensus 451 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 488 (647)
...+...|++++|...++++++..| ++.....+..++
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 6677777777777777777777766 455555444443
No 180
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.00 E-value=4.3e-05 Score=61.17 Aligned_cols=100 Identities=6% Similarity=-0.089 Sum_probs=85.2
Q ss_pred CCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC--chhhH
Q 006388 3 FHDGVSWNLLISGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGS--YVFVG 80 (647)
Q Consensus 3 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~ 80 (647)
..+...|..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...++..++.. +. +...+
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 79 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVW 79 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHH
Confidence 3456788999999999999999999999998876 6677888889999999999999999999998875 34 57788
Q ss_pred HHHHHHHHhc-CChHHHHHHhccCCC
Q 006388 81 SPLVDMYAKL-GLIYDAKRGFDELPE 105 (647)
Q Consensus 81 ~~li~~~~~~-g~~~~A~~~~~~~~~ 105 (647)
..+...|.+. |++++|.+.|+...+
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 8888899999 999999988887663
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.99 E-value=3.9e-05 Score=76.97 Aligned_cols=137 Identities=9% Similarity=-0.014 Sum_probs=101.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCc-ChHHHHHHHH
Q 006388 342 VSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRP-IHDHYTCMID 420 (647)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 420 (647)
..|..+...+.+.|++++|+..|++.++. .|+.. .....+++. ...| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~~----------~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADGA----------KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHHG----------GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHHH----------HHHHHHHHHHHHHHH
Confidence 44666677777777777777777776641 01000 000011100 1122 3567888999
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHH
Q 006388 421 ILSRAGRLEEAKSFINKM-PFPPD-AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVS 498 (647)
Q Consensus 421 ~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 498 (647)
+|.+.|++++|++.++++ ...|+ ...|..+..++...|++++|+..++++++++|++...+..+..++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 55564 7789999999999999999999999999999999999999999999988888776
Q ss_pred HH
Q 006388 499 QL 500 (647)
Q Consensus 499 ~~ 500 (647)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 53
No 182
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.98 E-value=1.2e-05 Score=68.58 Aligned_cols=71 Identities=11% Similarity=-0.012 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-C-------CCCC-hhhH----HHHHHHHHhcCChhHHHHHHHHHhccCCCCchh
Q 006388 414 HYTCMIDILSRAGRLEEAKSFINKM-P-------FPPD-AIGW----ATLLSSCRIHGNVEIGKWAAESLLELDPYNPAS 480 (647)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~~-~-------~~p~-~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 480 (647)
.|..+..++.+.|++++|+..+++. . +.|+ ...| .....++...|++++|+..|+++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5666666677777777766666554 3 3786 6788 999999999999999999999999999988766
Q ss_pred HHHH
Q 006388 481 YVLL 484 (647)
Q Consensus 481 ~~~l 484 (647)
+..+
T Consensus 139 ~~~~ 142 (159)
T 2hr2_A 139 TPGK 142 (159)
T ss_dssp CTTH
T ss_pred HHHH
Confidence 5433
No 183
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.97 E-value=6.9e-05 Score=62.06 Aligned_cols=102 Identities=13% Similarity=0.039 Sum_probs=63.2
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCcC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----hhhHHHHHHHHHh
Q 006388 383 LSACSRAGLVEKGRHYFEIMVKEYGIRPI-HDHYTCMIDILSRAGRLEEAKSFINKM-PFPPD----AIGWATLLSSCRI 456 (647)
Q Consensus 383 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~ 456 (647)
...+...|++++|...|+.+.+...-.+. ...+..+...+.+.|++++|...+++. ...|+ ...+..+..++..
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence 33455566666666666666543211111 135556666777777777777777665 22232 4556777777788
Q ss_pred cCChhHHHHHHHHHhccCCCCchhHHHH
Q 006388 457 HGNVEIGKWAAESLLELDPYNPASYVLL 484 (647)
Q Consensus 457 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l 484 (647)
.|++++|...++++++..|+++......
T Consensus 89 ~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 89 EGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp TTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 8888888888888888888766554433
No 184
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.96 E-value=9.3e-05 Score=66.86 Aligned_cols=96 Identities=10% Similarity=-0.057 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-----------------hhhHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 006388 412 HDHYTCMIDILSRAGRLEEAKSFINKM-PFPPD-----------------AIGWATLLSSCRIHGNVEIGKWAAESLLEL 473 (647)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 473 (647)
...+..+...+.+.|++++|.+.|++. ...|+ ...|..+..++...|++++|+..+++++++
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345666777788888888888888766 22221 268888999999999999999999999999
Q ss_pred CCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhC
Q 006388 474 DPYNPASYVLLSSIYASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 474 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 507 (647)
+|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998763
No 185
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.96 E-value=1.2e-05 Score=79.90 Aligned_cols=147 Identities=11% Similarity=0.023 Sum_probs=84.8
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHH
Q 006388 341 EVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMID 420 (647)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 420 (647)
...|..+...+.+.|++++|+..|++.... .|+... +...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 456777777888889999999999988763 455432 233444444433221 136788889
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhh-hhCCChhHH
Q 006388 421 ILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIY-ASKGKWDHV 497 (647)
Q Consensus 421 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a 497 (647)
+|.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|+++.++..|..+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 3445 5788999999999999999999999999999999999998888884 455778888
Q ss_pred HHHHHHHHhC
Q 006388 498 SQLRRTMREK 507 (647)
Q Consensus 498 ~~~~~~m~~~ 507 (647)
.+.+++|.+.
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8888887654
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.94 E-value=1.1e-05 Score=66.05 Aligned_cols=93 Identities=12% Similarity=0.054 Sum_probs=63.4
Q ss_pred CCcHHHHHHHHHHHHHhcC-CCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHH
Q 006388 389 AGLVEKGRHYFEIMVKEYG-IRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKW 465 (647)
Q Consensus 389 ~g~~~~a~~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~ 465 (647)
.|++++|+..|+...+... -+.+...+..+...|.+.|++++|.+.+++. ...| +...+..+..++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 4666677777776653200 1223466777777888888888888888776 3334 46778888888888888888988
Q ss_pred HHHHHhccCCCCchhH
Q 006388 466 AAESLLELDPYNPASY 481 (647)
Q Consensus 466 ~~~~~~~~~p~~~~~~ 481 (647)
.++++++..|+++...
T Consensus 83 ~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhCCCcHHHH
Confidence 8888888888776543
No 187
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.93 E-value=5.8e-05 Score=78.21 Aligned_cols=124 Identities=13% Similarity=0.118 Sum_probs=96.1
Q ss_pred HHhcCCcHHHHHHHHHHHHHhcC--C---Cc-ChHHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCC-hhhHH
Q 006388 385 ACSRAGLVEKGRHYFEIMVKEYG--I---RP-IHDHYTCMIDILSRAGRLEEAKSFINKM---------PFPPD-AIGWA 448 (647)
Q Consensus 385 a~~~~g~~~~a~~~~~~~~~~~~--~---~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~ 448 (647)
.+...|++++|..+++...+... + .| ...+++.|..+|...|++++|..++++. +..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34567888888888777654321 1 12 2467888889999999999998888765 24455 66889
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhc-----cCCCCchh---HHHHHHhhhhCCChhHHHHHHHHHHhCC
Q 006388 449 TLLSSCRIHGNVEIGKWAAESLLE-----LDPYNPAS---YVLLSSIYASKGKWDHVSQLRRTMREKG 508 (647)
Q Consensus 449 ~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~g 508 (647)
.|...|...|++++|+.+++++++ ++|++|.+ ...|..++...|++++|..++++++++-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999886 46776544 4578888899999999999999998754
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.91 E-value=2.4e-05 Score=68.21 Aligned_cols=74 Identities=12% Similarity=0.017 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc-hhHHHHH
Q 006388 412 HDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNP-ASYVLLS 485 (647)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~ 485 (647)
...|..+..+|.+.|++++|...+++. ...| +...|..+..++...|++++|...++++++++|+++ .....+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~ 139 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMK 139 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 467888888999999999999998887 3445 477899999999999999999999999999999887 4444443
No 189
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.90 E-value=5.4e-05 Score=65.28 Aligned_cols=131 Identities=15% Similarity=0.050 Sum_probs=70.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCc----ChHH
Q 006388 344 WTALVSGYAKFGKANETIDLFEKMLSHGL-KPD----EVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRP----IHDH 414 (647)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~ 414 (647)
+..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|..+++...+...-.+ ....
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 33444444445555555555544433110 011 12444455555666666666666665543211111 1345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-------CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 006388 415 YTCMIDILSRAGRLEEAKSFINKM-------PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELD 474 (647)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 474 (647)
+..+...+...|++++|.+.+++. +..+ ....+..+...+...|++++|...+++++++.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 566666777777777777766654 1111 13456677777788888888888888776543
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.90 E-value=0.00048 Score=73.11 Aligned_cols=170 Identities=9% Similarity=-0.015 Sum_probs=136.1
Q ss_pred CCHHHHHHHHhhcC---CCChhhHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC
Q 006388 324 GNIEDSHRLFNEMN---VRDEVSWTALVSGYAKFGK----------ANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAG 390 (647)
Q Consensus 324 g~~~~A~~~~~~~~---~~d~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 390 (647)
..-++|.+.++.+. ..+..+|+.--..+...|+ ++++++.++++.+.. +-+...|..-..++.+.+
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 33467777777765 3356678877777777777 899999999998853 234558888778888888
Q ss_pred --cHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcC-CHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhc--------
Q 006388 391 --LVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAG-RLEEAKSFINKM-PFPP-DAIGWATLLSSCRIH-------- 457 (647)
Q Consensus 391 --~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~-------- 457 (647)
+++++++.++.+.+. -+-+...|+.-..++.+.| .++++++.++++ ...| +...|+.....+...
T Consensus 122 ~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 779999999999874 2346678888888888899 899999999988 5555 588999888887663
Q ss_pred ------CChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhH
Q 006388 458 ------GNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDH 496 (647)
Q Consensus 458 ------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 496 (647)
+.++++.+.++++++.+|++..+|.-+..++.+.|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557899999999999999999999999999999988655
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.83 E-value=4.2e-05 Score=75.84 Aligned_cols=152 Identities=9% Similarity=0.010 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC
Q 006388 310 ITVSNALVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRA 389 (647)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 389 (647)
...+..+...+.+.|++++|...|++....+.... .+...|+..++...+. ...+..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45567788889999999999999998652221111 1222333344433221 13677788889999
Q ss_pred CcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHH-HhcCChhHHHHH
Q 006388 390 GLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPPD-AIGWATLLSSC-RIHGNVEIGKWA 466 (647)
Q Consensus 390 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~-~~~~~~~~a~~~ 466 (647)
|++++|+..++...+. .+.+...|..+..+|...|++++|.+.|+++ ...|+ ...+..|.... ...+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988764 2346788889999999999999999999988 55565 45555555552 345677888899
Q ss_pred HHHHhccCCCCc
Q 006388 467 AESLLELDPYNP 478 (647)
Q Consensus 467 ~~~~~~~~p~~~ 478 (647)
++++++..|.++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 999999888754
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.80 E-value=3.4e-05 Score=61.90 Aligned_cols=92 Identities=11% Similarity=0.026 Sum_probs=73.3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------chhHH
Q 006388 411 IHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYN------PASYV 482 (647)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 482 (647)
+...+..+...+.+.|++++|.+.+++. ...| +...|..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4556777888888888888888888876 3334 57788889999999999999999999999999988 67777
Q ss_pred HHHHhhhhCCChhHHHHHHH
Q 006388 483 LLSSIYASKGKWDHVSQLRR 502 (647)
Q Consensus 483 ~l~~~~~~~g~~~~a~~~~~ 502 (647)
.++.++...|++++|.+.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88888887777776655443
No 193
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.00025 Score=72.87 Aligned_cols=158 Identities=11% Similarity=-0.018 Sum_probs=116.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcCh
Q 006388 349 SGYAKFGKANETIDLFEKMLSHGLKPD----------------EVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIH 412 (647)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 412 (647)
..+.+.|++++|++.|.+..+...... ...+..+...|...|++++|.+++..+.+..+..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 345667888888888888776432211 1246778899999999999999999887644333332
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHhcc------C
Q 006388 413 ----DHYTCMIDILSRAGRLEEAKSFINKM-------PFPPD-AIGWATLLSSCRIHGNVEIGKWAAESLLEL------D 474 (647)
Q Consensus 413 ----~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~ 474 (647)
.+.+.+...+...|++++|.+++++. +..+. ..++..|...+...|++++|...++++... .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 23344444555678999999888765 22333 567888999999999999999999987753 1
Q ss_pred CCCchhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 475 PYNPASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 475 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
|.....+..++.+|...|++++|..++++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 22346788999999999999999999988764
No 194
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.77 E-value=8.1e-05 Score=58.65 Aligned_cols=65 Identities=22% Similarity=0.167 Sum_probs=60.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhC
Q 006388 443 DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 443 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 507 (647)
+...|..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 57789999999999999999999999999999999999999999999999999999999988753
No 195
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.76 E-value=0.00012 Score=73.28 Aligned_cols=65 Identities=11% Similarity=-0.013 Sum_probs=61.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhC
Q 006388 443 DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 443 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 507 (647)
+...|..+..++.+.|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 36788999999999999999999999999999999999999999999999999999999998764
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.75 E-value=9.1e-05 Score=56.81 Aligned_cols=81 Identities=21% Similarity=0.305 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhh
Q 006388 412 HDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYA 489 (647)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 489 (647)
...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++.+|.++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456777778888888888888888776 2333 46778888888999999999999999999999998888888888876
Q ss_pred hCC
Q 006388 490 SKG 492 (647)
Q Consensus 490 ~~g 492 (647)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 544
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.73 E-value=5.5e-05 Score=61.37 Aligned_cols=77 Identities=13% Similarity=0.098 Sum_probs=64.0
Q ss_pred HHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 430 EAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 430 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
+|.+.+++. ...| +...|..+...+...|++++|+..++++++.+|.++..+..++.+|...|++++|...+++..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555554 3344 4778888888999999999999999999999999999999999999999999999999998765
No 198
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.73 E-value=5.9e-06 Score=81.70 Aligned_cols=432 Identities=11% Similarity=0.078 Sum_probs=271.3
Q ss_pred cccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHHHHH
Q 006388 6 GVSWNLLISGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSPLVD 85 (647)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 85 (647)
+..|+.|..++.+.|...+|++.|-+ ..|...|..++.++.+.|.++.-...+....+. ..++.+=+.|+-
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk-------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC-------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh-------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 45799999999999999988876532 347778999999999999999999888776655 356677789999
Q ss_pred HHHhcCChHHHHHHhccCCCCCchHHHHHHHHHHhcCChHHHHHHhhcCCC------------------------CCeeh
Q 006388 86 MYAKLGLIYDAKRGFDELPEKNIVMYNTMITGLLRRGLVEESRRLFRGMKD------------------------KDSIS 141 (647)
Q Consensus 86 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------------------~~~~~ 141 (647)
+|++.+++.+-++.+ ..||..-......-|...|.++.|.-+|..+.. .++.|
T Consensus 125 ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp HHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred HHHhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 999999877643322 236777777788888888888888888877652 37889
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 006388 142 WTTMITGLMQNGLEREAIDLFREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCK 221 (647)
Q Consensus 142 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 221 (647)
|-.+-.+|...+.+.-|--.--.+.- .|| ....++..|-..|.+++-..+++..+... ......++-|.-.|+|
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsK 275 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 275 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHh
Confidence 99999999999999877665444442 222 23345667888899999888888766322 4567789999999998
Q ss_pred cCCHHHHHHHHhcCCC----C-------ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 006388 222 CKSIKYAESVFRTMAW----K-------NVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLAS 290 (647)
Q Consensus 222 ~g~~~~A~~~~~~~~~----~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 290 (647)
-. .++-.+.++..-. | ....|.-++-.|.+-.+++.|... |.+. .|+...-........+..+
T Consensus 276 Y~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h--~~~Aw~h~~Fkdii~KVaN 349 (624)
T 3lvg_A 276 FK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVAN 349 (624)
T ss_dssp SC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSC--HHHHCCGGGGTTTGGGCSC
T ss_pred cC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhC--ChhhccHHHHHHHHHHcch
Confidence 63 4444444443222 2 345688888889888888877543 2221 1111111111112222223
Q ss_pred hHHHHHHHHHHHHhCCCcchhHHHH-------------HHHHHHhcCCHHHHHHHHhhcCCCChhhHH-HHHHHHHHcCC
Q 006388 291 LEEGTQFHGRSLVTGLISFITVSNA-------------LVTFYGKCGNIEDSHRLFNEMNVRDEVSWT-ALVSGYAKFGK 356 (647)
Q Consensus 291 ~~~a~~~~~~~~~~~~~~~~~~~~~-------------li~~~~~~g~~~~A~~~~~~~~~~d~~~~~-~li~~~~~~g~ 356 (647)
.+.--+.....++. .+...+- .++++.+.|++.-....+......|...-| ++-..|....+
T Consensus 350 ~EiyYKAi~FYL~e----~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEED 425 (624)
T 3lvg_A 350 VELYYRAIQFYLEF----KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEED 425 (624)
T ss_dssp SHHHHHHHHHHTTS----CCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHh----ChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhh
Confidence 22211111111111 1111222 334445555555554455444444444433 23334444554
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHH
Q 006388 357 ANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFIN 436 (647)
Q Consensus 357 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 436 (647)
++ ++..-+.+|-+-..+.-|.++ ++ .+-.+.-..-...|.+.++++++.++.+
T Consensus 426 y~-------------------~LR~SId~ydNFD~i~LA~rL-----Ek---HeL~eFRrIAA~LYkkn~rw~qsi~l~K 478 (624)
T 3lvg_A 426 YQ-------------------ALRTSIDAYDNFDNISLAQRL-----EK---HELIEFRRIAAYLFKGNNRWKQSVELCK 478 (624)
T ss_dssp CH-------------------HHHHTTSSCCCSCTTHHHHHH-----HT---CSSHHHHHHHHHHHHTTCHHHHHSSCSS
T ss_pred HH-------------------HHHHHHHHhccccHHHHHHHH-----hh---CchHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 43 222333334444444444332 11 1233344445567888999999988876
Q ss_pred hCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHH
Q 006388 437 KMPFPPDAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQL 500 (647)
Q Consensus 437 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 500 (647)
+=+.-.|. +......|+.+.++.+++-..+.+ +...|...+..|...=+.|-+.++
T Consensus 479 kDklykDA------ietAa~S~~~elaeeLL~yFv~~g--~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 479 KDSLYKDA------MQYASESKDTELAEELLQWFLQEE--KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp TTCCTTGG------GTTTTTCCCTTHHHHHHHHHHHHC--STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred hcccHHHH------HHHHHHcCCHHHHHHHHHHHHHcC--chHHHHHHHHHHhhccChHHHHHH
Confidence 65433333 334556788888998888887765 447788888888888888887776
No 199
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.72 E-value=0.00027 Score=73.22 Aligned_cols=95 Identities=9% Similarity=-0.023 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----------------hhhHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 006388 413 DHYTCMIDILSRAGRLEEAKSFINKM-PFPPD----------------AIGWATLLSSCRIHGNVEIGKWAAESLLELDP 475 (647)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 475 (647)
..|..+...|.+.|++++|...|+++ ...|+ ...|..+..++.+.|++++|+..++++++++|
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 34555566666666666666666655 11122 57888999999999999999999999999999
Q ss_pred CCchhHHHHHHhhhhCCChhHHHHHHHHHHhC
Q 006388 476 YNPASYVLLSSIYASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 476 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 507 (647)
+++.+|..++.+|...|++++|...+++..+.
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998874
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.71 E-value=1.9e-05 Score=67.07 Aligned_cols=84 Identities=15% Similarity=0.111 Sum_probs=64.7
Q ss_pred HcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCC----------hhHHHHHHHHHhccCCCCchhHHHHHHhhhhC
Q 006388 424 RAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGN----------VEIGKWAAESLLELDPYNPASYVLLSSIYASK 491 (647)
Q Consensus 424 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 491 (647)
+.+.+++|.+.+++. ...| +...|..+..++...++ +++|+..++++++++|++..+|..++++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 445566666666555 2333 45666666666666554 56999999999999999999999999999987
Q ss_pred C-----------ChhHHHHHHHHHHhC
Q 006388 492 G-----------KWDHVSQLRRTMREK 507 (647)
Q Consensus 492 g-----------~~~~a~~~~~~m~~~ 507 (647)
| ++++|.+.|++..+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh
Confidence 5 899999999998873
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.57 E-value=7.1e-05 Score=59.97 Aligned_cols=97 Identities=13% Similarity=0.054 Sum_probs=78.0
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCc------hh
Q 006388 5 DGVSWNLLISGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSY------VF 78 (647)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~------~~ 78 (647)
++..|..+...+.+.|++++|++.|++..+.. |.+...+..+..++...|++++|...++..++... .+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS-TAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS-STTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CccHHHHHHH
Confidence 45678889999999999999999999998876 66788899999999999999999999999987652 22 44
Q ss_pred hHHHHHHHHHhcCChHHHHHHhccCC
Q 006388 79 VGSPLVDMYAKLGLIYDAKRGFDELP 104 (647)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~~~ 104 (647)
.+..+...+...|+.+.|...|++++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 55666667777777777777776665
No 202
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.51 E-value=0.00045 Score=53.30 Aligned_cols=70 Identities=14% Similarity=0.092 Sum_probs=61.5
Q ss_pred CCChhhHHHHHHHHHhcCC---hhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhCCCc
Q 006388 441 PPDAIGWATLLSSCRIHGN---VEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREKGVR 510 (647)
Q Consensus 441 ~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 510 (647)
++++..|..+..++...++ .++|...++++++.+|+++.+...++..+...|++++|...|+++.+....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3467888888888865554 799999999999999999999999999999999999999999999986554
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.46 E-value=9.4e-05 Score=62.82 Aligned_cols=87 Identities=16% Similarity=0.067 Sum_probs=55.5
Q ss_pred CcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCC----------HHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhc
Q 006388 390 GLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGR----------LEEAKSFINKM-PFPPD-AIGWATLLSSCRIH 457 (647)
Q Consensus 390 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~ 457 (647)
+.+++|.+.++...+. -+.+...|..+..++...|+ +++|+..|++. .+.|+ ...|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 3445555555554432 12234455555555555443 34777777666 44554 66777777777765
Q ss_pred -----------CChhHHHHHHHHHhccCCCCc
Q 006388 458 -----------GNVEIGKWAAESLLELDPYNP 478 (647)
Q Consensus 458 -----------~~~~~a~~~~~~~~~~~p~~~ 478 (647)
|++++|+..|+++++++|++.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 489999999999999999874
No 204
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.39 E-value=0.00025 Score=72.28 Aligned_cols=116 Identities=11% Similarity=0.108 Sum_probs=85.8
Q ss_pred HHHHHHcCCHHHHHHHHHhC------CCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHhcc-----CCCCc---hh
Q 006388 419 IDILSRAGRLEEAKSFINKM------PFPPD----AIGWATLLSSCRIHGNVEIGKWAAESLLEL-----DPYNP---AS 480 (647)
Q Consensus 419 i~~~~~~g~~~~A~~~~~~~------~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~p~~~---~~ 480 (647)
+.-+.+.|++++|.+++++. -+.|+ ..+++.|..+|...|++++|+.+++++++. +|++| ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34456778888888887655 12232 567888888999999999999999988753 45444 56
Q ss_pred HHHHHHhhhhCCChhHHHHHHHHHHhCCCccCCCcceEeEcCeEEEEEecCCCCcchHHHHHHHHHHHHhhH
Q 006388 481 YVLLSSIYASKGKWDHVSQLRRTMREKGVRKDPGCSWIKYKSRVHIFSADDWSSPYSDQIYAELEKLNRKMI 552 (647)
Q Consensus 481 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~ 552 (647)
+..|+.+|...|++++|..++++..+--- ..- ...||...++...+.+....|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~-~~l-----------------G~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR-VTH-----------------GREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHT-----------------CTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH-Hhc-----------------CCCChHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999998865211 000 1369999998888888777765
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.35 E-value=0.0011 Score=68.52 Aligned_cols=122 Identities=17% Similarity=0.027 Sum_probs=81.2
Q ss_pred HHHcCChHHHHHHHHHHHHC---CCCCC---H-HHHHHHHHHHhcCCcHHHHHHHHHHHHHh----cC-CCcC-hHHHHH
Q 006388 351 YAKFGKANETIDLFEKMLSH---GLKPD---E-VTLIGVLSACSRAGLVEKGRHYFEIMVKE----YG-IRPI-HDHYTC 417 (647)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~~~---g~~p~---~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~----~~-~~p~-~~~~~~ 417 (647)
+...|++++|+.++++.++. -+.|+ . .+++.+..+|...|++++|..++++...- +| -.|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777777766542 12233 2 26777777888888888888777766532 22 1222 467888
Q ss_pred HHHHHHHcCCHHHHHHHHHhC---------CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHhc
Q 006388 418 MIDILSRAGRLEEAKSFINKM---------PFPPD-AIGWATLLSSCRIHGNVEIGKWAAESLLE 472 (647)
Q Consensus 418 li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 472 (647)
|..+|...|++++|..++++. +..|+ ..+.+.|..++...+.+++|+..+.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999998888776 23344 33444555566678888999998887764
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.26 E-value=0.0009 Score=51.00 Aligned_cols=83 Identities=12% Similarity=0.059 Sum_probs=65.0
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHHHH
Q 006388 5 DGVSWNLLISGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSPLV 84 (647)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 84 (647)
+...|..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...++..++.. +.+...+..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~ 84 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 35578888888889999999999999988875 5677788888888889999999999998888875 34556666666
Q ss_pred HHHHhc
Q 006388 85 DMYAKL 90 (647)
Q Consensus 85 ~~~~~~ 90 (647)
.++.+.
T Consensus 85 ~~~~~~ 90 (91)
T 1na3_A 85 NAKQKQ 90 (91)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 665543
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.25 E-value=0.0023 Score=53.68 Aligned_cols=116 Identities=7% Similarity=-0.036 Sum_probs=59.5
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHH
Q 006388 355 GKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSF 434 (647)
Q Consensus 355 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 434 (647)
+++++|++.|++..+.| .|+.. +...|...+.+++|.++|+...+. .+...+..|..+|..-.
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~-------- 71 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGK-------- 71 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCS--------
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCC--------
Confidence 34556666666666555 23322 444444555555565555555432 23334444444444300
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhh----CCChhHHHHHHHHHHhCCC
Q 006388 435 INKMPFPPDAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYAS----KGKWDHVSQLRRTMREKGV 509 (647)
Q Consensus 435 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 509 (647)
...++.++|...++++.+. .++.++..|+.+|.. .+++++|.+.+++..+.|.
T Consensus 72 --------------------g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 72 --------------------YVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp --------------------SSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred --------------------CCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 0044555555555555544 245556666666666 5666666666666665554
No 208
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.20 E-value=0.0009 Score=53.96 Aligned_cols=80 Identities=15% Similarity=0.085 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhc
Q 006388 395 GRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLE 472 (647)
Q Consensus 395 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 472 (647)
+...|+...+. .+.+...+..+...|.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++
T Consensus 4 a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555432 2234566677777777777777777777765 2333 366777777788888888888888888877
Q ss_pred cCCC
Q 006388 473 LDPY 476 (647)
Q Consensus 473 ~~p~ 476 (647)
+.|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 7663
No 209
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.16 E-value=0.0041 Score=65.92 Aligned_cols=148 Identities=11% Similarity=0.002 Sum_probs=119.1
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCCc----------HHHHHHHHHHHHHhcCCCcChHHHHHHHHHHH
Q 006388 355 GKANETIDLFEKMLSHGLKPDEV-TLIGVLSACSRAGL----------VEKGRHYFEIMVKEYGIRPIHDHYTCMIDILS 423 (647)
Q Consensus 355 g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 423 (647)
...++|++.++++.+. .|+.. .|+.--.++...|+ +++++++++.+.+. .+-+...|..-..++.
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 3456889999999984 66655 55554445555555 89999999999874 3446678888888888
Q ss_pred HcC--CHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcC-ChhHHHHHHHHHhccCCCCchhHHHHHHhhhhC-------
Q 006388 424 RAG--RLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHG-NVEIGKWAAESLLELDPYNPASYVLLSSIYASK------- 491 (647)
Q Consensus 424 ~~g--~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 491 (647)
+.| ++++|+++++++ ...| +...|+.-.......| ..+++.+.++++++.+|.|..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 779999999998 3344 6889999998988888 899999999999999999999999988887763
Q ss_pred -------CChhHHHHHHHHHHh
Q 006388 492 -------GKWDHVSQLRRTMRE 506 (647)
Q Consensus 492 -------g~~~~a~~~~~~m~~ 506 (647)
++++++.+.+++...
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHh
Confidence 667888888887765
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.14 E-value=0.0068 Score=59.10 Aligned_cols=137 Identities=12% Similarity=0.033 Sum_probs=64.0
Q ss_pred CCChhhHHHHHHHHHH--cCC---hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhc----CC----cHHHHHHHHHHHH
Q 006388 338 VRDEVSWTALVSGYAK--FGK---ANETIDLFEKMLSHGLKPDEV-TLIGVLSACSR----AG----LVEKGRHYFEIMV 403 (647)
Q Consensus 338 ~~d~~~~~~li~~~~~--~g~---~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~----~g----~~~~a~~~~~~~~ 403 (647)
..+..+|...+.+... .++ ..+|..+|++.++. .|+.. .+..+..++.. .+ ........++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 4467778777766432 333 47889999998884 67643 44444333320 00 0000001111110
Q ss_pred HhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 006388 404 KEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM-PFPPDAIGWATLLSSCRIHGNVEIGKWAAESLLELDPY 476 (647)
Q Consensus 404 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 476 (647)
.....+.+...|..+.-.+...|++++|...++++ ...|+...|..+...+...|+.++|...+++++.++|.
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 00011233444444444444445555555555544 22344444444444444555555555555555555553
No 211
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.07 E-value=5e-05 Score=75.24 Aligned_cols=388 Identities=12% Similarity=0.096 Sum_probs=224.0
Q ss_pred ChHHHHHHhccCCCCCchHHHHHHHHHHhcCChHHHHHHhhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 006388 92 LIYDAKRGFDELPEKNIVMYNTMITGLLRRGLVEESRRLFRGMKDKDSISWTTMITGLMQNGLEREAIDLFREMRLEGLA 171 (647)
Q Consensus 92 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 171 (647)
++++|.+.-++..+| ..|+.|..+..+.+++.+|++-|-+ ..|+..|..+|....+.|.+++-+..+.-.++..-
T Consensus 40 ~ldRa~eyA~~~n~p--~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k- 114 (624)
T 3lvg_A 40 NLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR- 114 (624)
T ss_dssp CSTTTTTSSSSCCCC--CCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC-
T ss_pred ccHHHHHHHHHhCCc--cHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-
Confidence 444444444444433 4577778888888888777776644 34666788888888888888888877765555432
Q ss_pred CChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---------------
Q 006388 172 MDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMA--------------- 236 (647)
Q Consensus 172 pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--------------- 236 (647)
+...=+.++-+|++.+++.+-++++. .||..-...+.+-+...|.++.|.-+|..+.
T Consensus 115 -e~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~y 186 (624)
T 3lvg_A 115 -ESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEY 186 (624)
T ss_dssp -STTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGG
T ss_pred -ccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 33333567788888887766444432 4555555667777777788887777777664
Q ss_pred ---------CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC
Q 006388 237 ---------WKNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLI 307 (647)
Q Consensus 237 ---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~ 307 (647)
..++.+|-.+-.+|...+.+.-|.-.--.+. +.||. +..++..|-..|.+++-..+++...... .
T Consensus 187 q~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniI---vhade--L~elv~~YE~~G~f~ELIsLlEaglglE-r 260 (624)
T 3lvg_A 187 QAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADE--LEELINYYQDRGYFEELITMLEAALGLE-R 260 (624)
T ss_dssp GSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTST-T
T ss_pred HHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCC-c
Confidence 1367799999999999999887755444443 22322 2234555777888888887777665322 4
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHhhc----CCC-------ChhhHHHHHHHHHHcCChHHHHHH-------------
Q 006388 308 SFITVSNALVTFYGKCGNIEDSHRLFNEM----NVR-------DEVSWTALVSGYAKFGKANETIDL------------- 363 (647)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~-------d~~~~~~li~~~~~~g~~~~A~~~------------- 363 (647)
....+++-|.-.|+|- +.++..+.++.. .-| ....|.-++-.|.+-.+++.|...
T Consensus 261 AHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~ 339 (624)
T 3lvg_A 261 AHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQ 339 (624)
T ss_dssp CCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGG
T ss_pred hhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHH
Confidence 5677888888888875 344444444432 222 456788898888888888877532
Q ss_pred HHHHHHCCCCCCHHHH---------------HHHHHHHhcCCcHHHHHHHHHHHHHh-----c----CCCcChHHHHHHH
Q 006388 364 FEKMLSHGLKPDEVTL---------------IGVLSACSRAGLVEKGRHYFEIMVKE-----Y----GIRPIHDHYTCMI 419 (647)
Q Consensus 364 ~~~m~~~g~~p~~~t~---------------~~ll~a~~~~g~~~~a~~~~~~~~~~-----~----~~~p~~~~~~~li 419 (647)
|++.... .+|...| +-||.++...=+..+..++|+..-.- | .-.-+..+-.++-
T Consensus 340 Fkdii~K--VaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln 417 (624)
T 3lvg_A 340 FKDIITK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLN 417 (624)
T ss_dssp GTTTGGG--CSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHH
T ss_pred HHHHHHH--cchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHH
Confidence 1111110 1222222 33444444333444444444432100 0 0011334556677
Q ss_pred HHHHHcCCHHHHHHHHHhCC-C-----------CCChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHh
Q 006388 420 DILSRAGRLEEAKSFINKMP-F-----------PPDAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSI 487 (647)
Q Consensus 420 ~~~~~~g~~~~A~~~~~~~~-~-----------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 487 (647)
+.|....+++.-..-++... + .+-...-..-...|.+++++++++.+. ..| ..|-..+..
T Consensus 418 ~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~-------KkD-klykDAiet 489 (624)
T 3lvg_A 418 NLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELC-------KKD-SLYKDAMQY 489 (624)
T ss_dssp HHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCS-------STT-CCTTGGGTT
T ss_pred HHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHH-------Hhc-ccHHHHHHH
Confidence 77777777776555544331 1 011111111222345555555544332 212 344445555
Q ss_pred hhhCCChhHHHHHHHHHHhCCC
Q 006388 488 YASKGKWDHVSQLRRTMREKGV 509 (647)
Q Consensus 488 ~~~~g~~~~a~~~~~~m~~~g~ 509 (647)
-+..|+.+-|.++++-..+.|-
T Consensus 490 Aa~S~~~elaeeLL~yFv~~g~ 511 (624)
T 3lvg_A 490 ASESKDTELAEELLQWFLQEEK 511 (624)
T ss_dssp TTTCCCTTHHHHHHHHHHHHCS
T ss_pred HHHcCCHHHHHHHHHHHHHcCc
Confidence 6666777777777776665543
No 212
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.06 E-value=0.008 Score=50.26 Aligned_cols=107 Identities=7% Similarity=-0.074 Sum_probs=81.0
Q ss_pred cCCHHHHHHHHhhcCC-CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----CCcHHHHHH
Q 006388 323 CGNIEDSHRLFNEMNV-RDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSR----AGLVEKGRH 397 (647)
Q Consensus 323 ~g~~~~A~~~~~~~~~-~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~ 397 (647)
.+++++|.+.|++..+ .++... +...|...+.+++|++.|++..+.| +......+...|.. .+++++|.+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 3568899999988763 355555 7777778888999999999999875 56667777777776 789999999
Q ss_pred HHHHHHHhcCCCcChHHHHHHHHHHHH----cCCHHHHHHHHHhC
Q 006388 398 YFEIMVKEYGIRPIHDHYTCMIDILSR----AGRLEEAKSFINKM 438 (647)
Q Consensus 398 ~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~ 438 (647)
+|+...+. -+...+..|..+|.. .+++++|.++|++.
T Consensus 83 ~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 123 (138)
T 1klx_A 83 YYSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 123 (138)
T ss_dssp HHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHcC----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 99988763 345666777777776 67777777777665
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.99 E-value=0.00071 Score=68.81 Aligned_cols=82 Identities=7% Similarity=-0.024 Sum_probs=60.9
Q ss_pred cCCHHHHHHHHHhC---------CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHhc-----cCCCC---chhHHHHHH
Q 006388 425 AGRLEEAKSFINKM---------PFPPD-AIGWATLLSSCRIHGNVEIGKWAAESLLE-----LDPYN---PASYVLLSS 486 (647)
Q Consensus 425 ~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~---~~~~~~l~~ 486 (647)
.|++++|..++++. +..|+ ..+++.|..+|...|++++|+.+++++++ ++|++ ..++..|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35666666666543 22333 46778888888888888888888888775 34544 456889999
Q ss_pred hhhhCCChhHHHHHHHHHHh
Q 006388 487 IYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 487 ~~~~~g~~~~a~~~~~~m~~ 506 (647)
+|...|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999998865
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.94 E-value=0.0038 Score=52.29 Aligned_cols=65 Identities=9% Similarity=-0.054 Sum_probs=53.1
Q ss_pred CChhhHHHHHHHHHhcC---ChhHHHHHHHHHhccC-C-CCchhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 442 PDAIGWATLLSSCRIHG---NVEIGKWAAESLLELD-P-YNPASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 442 p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
++..+...+..++.+.+ +.++|+.+++.+++.+ | ++...+..|+-+|.+.|++++|.++++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 56777777888888777 6668888888888887 6 4577888888899999999999999998876
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.91 E-value=0.0013 Score=51.30 Aligned_cols=78 Identities=18% Similarity=0.181 Sum_probs=57.0
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-Chh-hHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCCh
Q 006388 418 MIDILSRAGRLEEAKSFINKM-PFPP-DAI-GWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKW 494 (647)
Q Consensus 418 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 494 (647)
....+.+.|++++|.+.+++. ...| +.. .|..+..++...|++++|+..++++++++|+++..+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 345667788888888888776 3344 456 78888888888999999999999999999988776632 445
Q ss_pred hHHHHHHHH
Q 006388 495 DHVSQLRRT 503 (647)
Q Consensus 495 ~~a~~~~~~ 503 (647)
.++...+++
T Consensus 78 ~~a~~~~~~ 86 (99)
T 2kc7_A 78 MDILNFYNK 86 (99)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHH
Confidence 555555544
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.91 E-value=0.0032 Score=64.01 Aligned_cols=94 Identities=12% Similarity=0.004 Sum_probs=66.7
Q ss_pred cCCcHHHHHHHHHHHHHhc--CCC---c-ChHHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCC-hhhHHHHH
Q 006388 388 RAGLVEKGRHYFEIMVKEY--GIR---P-IHDHYTCMIDILSRAGRLEEAKSFINKM---------PFPPD-AIGWATLL 451 (647)
Q Consensus 388 ~~g~~~~a~~~~~~~~~~~--~~~---p-~~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll 451 (647)
..|++++|..+++...+.. -+. | ...+++.|..+|...|++++|..++++. +..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3467777777776655421 111 2 2367788888888888888888887765 24455 66788999
Q ss_pred HHHHhcCChhHHHHHHHHHhc-----cCCCCchhH
Q 006388 452 SSCRIHGNVEIGKWAAESLLE-----LDPYNPASY 481 (647)
Q Consensus 452 ~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~ 481 (647)
..|...|++++|+.+++++++ ++|++|.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 999999999999999998876 467766543
No 217
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.88 E-value=0.06 Score=43.26 Aligned_cols=140 Identities=9% Similarity=0.000 Sum_probs=96.2
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHH
Q 006388 352 AKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEA 431 (647)
Q Consensus 352 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 431 (647)
.-.|..++..++..+...+ .+..-++-++--....-+-+-..+.++.+-+-+.+ ..+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHH
Confidence 3456677777777776653 23334444444333344444455555554332222 245666666
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhCCCc
Q 006388 432 KSFINKMPFPPDAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREKGVR 510 (647)
Q Consensus 432 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 510 (647)
..-+-.++ .+......-+.....+|.-++-.+++..++..+|.+|.....++++|.+.|+..+|.+++.+.-++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 66666664 245556677888889999999999999987777778999999999999999999999999999999985
No 218
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.85 E-value=0.0022 Score=50.21 Aligned_cols=84 Identities=13% Similarity=0.014 Sum_probs=65.4
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCC-CCchhhHHHH
Q 006388 5 DGVSWNLLISGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGF-GSYVFVGSPL 83 (647)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~l 83 (647)
+...|..+...|.+.|++++|+..|++..+.. |.+...|..+..++...|++++|...+++.++... .++......+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l 83 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSEL 83 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHH
Confidence 45678899999999999999999999999886 66788899999999999999999999998876532 2344444444
Q ss_pred HHHHHhc
Q 006388 84 VDMYAKL 90 (647)
Q Consensus 84 i~~~~~~ 90 (647)
...+.+.
T Consensus 84 ~~~l~~~ 90 (100)
T 3ma5_A 84 QDAKLKA 90 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 4444443
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.81 E-value=0.0051 Score=62.57 Aligned_cols=100 Identities=11% Similarity=-0.012 Sum_probs=67.9
Q ss_pred HHHhcCCcHHHHHHHHHHHHHhcC--CCc----ChHHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCC-hhhH
Q 006388 384 SACSRAGLVEKGRHYFEIMVKEYG--IRP----IHDHYTCMIDILSRAGRLEEAKSFINKM---------PFPPD-AIGW 447 (647)
Q Consensus 384 ~a~~~~g~~~~a~~~~~~~~~~~~--~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~ 447 (647)
..+.+.|++++|..+++....... +.| ...+++.|..+|...|++++|+.++++. +..|+ ..++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 334456677777777766653211 112 2356777777888888888888777665 23454 5678
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhc-----cCCCCchhHHH
Q 006388 448 ATLLSSCRIHGNVEIGKWAAESLLE-----LDPYNPASYVL 483 (647)
Q Consensus 448 ~~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~~ 483 (647)
+.|...|...|++++|+.+++++++ ++|++|.+-..
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 8888899999999999999988775 47777655443
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.71 E-value=0.085 Score=58.78 Aligned_cols=101 Identities=18% Similarity=0.179 Sum_probs=62.0
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 006388 217 DMYCKCKSIKYAESVFRTMAWKNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQ 296 (647)
Q Consensus 217 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 296 (647)
......|+++.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+....
T Consensus 660 ~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 34566788888888877663 457888888888888888888888887643 3334444444555555554
Q ss_pred HHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHh
Q 006388 297 FHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFN 334 (647)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 334 (647)
+-......|. ++....+|.+.|++++|.+++.
T Consensus 729 ~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 729 LAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444331 1233344555666666655543
No 221
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.68 E-value=0.0032 Score=48.87 Aligned_cols=59 Identities=20% Similarity=0.359 Sum_probs=54.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCch-hHHHHHHhhhhCCChhHHHHHHHHHHhC
Q 006388 449 TLLSSCRIHGNVEIGKWAAESLLELDPYNPA-SYVLLSSIYASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 449 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 507 (647)
.....+...|++++|+..++++++.+|+++. .+..++.+|...|++++|.+.+++..+.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3456678899999999999999999999999 9999999999999999999999998874
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.30 E-value=0.16 Score=56.51 Aligned_cols=129 Identities=12% Similarity=0.071 Sum_probs=86.6
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCCCCchHHHHHHHHHHhcCChHHHHHHhhcCCCCCeehHHHHHHHHHhCCChhHHHH
Q 006388 81 SPLVDMYAKLGLIYDAKRGFDELPEKNIVMYNTMITGLLRRGLVEESRRLFRGMKDKDSISWTTMITGLMQNGLEREAID 160 (647)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 160 (647)
..++..+.+.|.+++|.++.+.- ..-.......|++++|.++.+.+. +...|..|...+.+.|+++.|.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~ 702 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIE 702 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHH
Confidence 66777778888888888766421 122344567888888888887764 55789999999999999999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 006388 161 LFREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRT 234 (647)
Q Consensus 161 ~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 234 (647)
+|..+.. |..+...+...++.+...++-+.....|. ++.-..+|.+.|++++|.+++.+
T Consensus 703 ~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 703 AFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 9988743 44444455556676666655555555441 23334456667777777665443
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.27 E-value=0.014 Score=54.49 Aligned_cols=87 Identities=13% Similarity=0.120 Sum_probs=69.5
Q ss_pred HHHHHHHHHhC-CCCCC---hhhHHHHHHHHHh-----cCChhHHHHHHHHHhccCCC-CchhHHHHHHhhhhC-CChhH
Q 006388 428 LEEAKSFINKM-PFPPD---AIGWATLLSSCRI-----HGNVEIGKWAAESLLELDPY-NPASYVLLSSIYASK-GKWDH 496 (647)
Q Consensus 428 ~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~-g~~~~ 496 (647)
..+|...+++. .+.|+ ...|..|...|.+ -|+.++|++.|+++++++|+ +..+++.++..|+.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555555554 44565 5577777777777 49999999999999999997 499999999999885 99999
Q ss_pred HHHHHHHHHhCCCccCCC
Q 006388 497 VSQLRRTMREKGVRKDPG 514 (647)
Q Consensus 497 a~~~~~~m~~~g~~~~~~ 514 (647)
+.+.+++........+|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999999977765554
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.11 E-value=0.03 Score=43.91 Aligned_cols=74 Identities=12% Similarity=0.082 Sum_probs=54.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-----C----CCCChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhH
Q 006388 411 IHDHYTCMIDILSRAGRLEEAKSFINKM-----P----FPPDAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASY 481 (647)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 481 (647)
+..-+-.|...+.+.|+++.|...++.+ + -.+...++..|..++.+.|+++.|...+++++++.|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 3344556666777777777777776654 1 113467788999999999999999999999999999887665
Q ss_pred HHH
Q 006388 482 VLL 484 (647)
Q Consensus 482 ~~l 484 (647)
..+
T Consensus 84 ~n~ 86 (104)
T 2v5f_A 84 GNL 86 (104)
T ss_dssp HHH
T ss_pred hhH
Confidence 544
No 225
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.07 E-value=1.9 Score=45.71 Aligned_cols=252 Identities=9% Similarity=0.041 Sum_probs=125.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 006388 211 VGSALVDMYCKCKSIKYAESVFRTMAWKNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLAS 290 (647)
Q Consensus 211 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 290 (647)
.-+.-+..+.+.+++......+.. ...+...-.....+....|+..+|......+-..| .........++..+.+.|.
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCC
Confidence 334455666677777777776665 43455555556667777787777777666666554 2233344445555544443
Q ss_pred hHHH--HHHHHHHHHhC-----------CCcc-hhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh---hHHHHHHHHHH
Q 006388 291 LEEG--TQFHGRSLVTG-----------LISF-ITVSNALVTFYGKCGNIEDSHRLFNEMNVRDEV---SWTALVSGYAK 353 (647)
Q Consensus 291 ~~~a--~~~~~~~~~~~-----------~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~---~~~~li~~~~~ 353 (647)
+... .+=+..+...| ++++ ......++..+.+-..+ ....... .++.. .+...+.-+++
T Consensus 152 lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~~-~~~~~~~~~~~~~~~rlar 227 (618)
T 1qsa_A 152 QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTT-GATDFTRQMAAVAFASVAR 227 (618)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHS-CCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhcc-CCChhhHHHHHHHHHHHHh
Confidence 3221 11111111111 1111 11223333333222222 2222221 11111 11112222333
Q ss_pred cCChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHH
Q 006388 354 FGKANETIDLFEKMLSHG-LKPDEV--TLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEE 430 (647)
Q Consensus 354 ~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 430 (647)
.+.+.|..+|....... +.+... ....+.......+...++...+...... .++.....-.+..-.+.|+++.
T Consensus 228 -~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 -QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp -HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred -cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 37788888888876533 222222 2222333334445345556666654432 2333333334444557799999
Q ss_pred HHHHHHhCCCCC-ChhhH-HHHHHHHHhcCChhHHHHHHHHHhc
Q 006388 431 AKSFINKMPFPP-DAIGW-ATLLSSCRIHGNVEIGKWAAESLLE 472 (647)
Q Consensus 431 A~~~~~~~~~~p-~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~ 472 (647)
|...|+.|+..+ +..-| -=+..+....|+.++|...++.+.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999986432 21111 1234466678999999999888874
No 226
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.03 E-value=0.047 Score=53.24 Aligned_cols=131 Identities=15% Similarity=0.093 Sum_probs=90.5
Q ss_pred CCCHHHHHHHHHHHh--c---CCcHHHHHHHHHHHHHhcCCCcC-hHHHHHHHHHHH----HcCC-------HHHHHHHH
Q 006388 373 KPDEVTLIGVLSACS--R---AGLVEKGRHYFEIMVKEYGIRPI-HDHYTCMIDILS----RAGR-------LEEAKSFI 435 (647)
Q Consensus 373 ~p~~~t~~~ll~a~~--~---~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~----~~g~-------~~~A~~~~ 435 (647)
+.|...|...+.+.. . .....+|+.+|++.++. .|+ ...|..+.-+|. ..+. +..|.+-.
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 455556666666543 2 23457899999999854 565 244443333332 1111 12233322
Q ss_pred HhCCC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhC
Q 006388 436 NKMPF-PPDAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREK 507 (647)
Q Consensus 436 ~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 507 (647)
..+.. +.++.+|..+...+...|++++|...++++++++| +...|..++.++.-.|++++|.+.+++....
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 33332 34688888888878888999999999999999997 5778889999999999999999999988764
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.95 E-value=0.033 Score=42.58 Aligned_cols=68 Identities=9% Similarity=0.004 Sum_probs=51.9
Q ss_pred CcChHHHHHHHHHHHHcCC---HHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 006388 409 RPIHDHYTCMIDILSRAGR---LEEAKSFINKM-PFPPD-AIGWATLLSSCRIHGNVEIGKWAAESLLELDPY 476 (647)
Q Consensus 409 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 476 (647)
++++..+..+..++...++ .++|..++++. ...|+ +..+..+...+.+.|++++|+..++++++.+|+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3466777777777765554 68888888877 44554 667777788888889999999999999888887
No 228
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.51 E-value=0.074 Score=42.77 Aligned_cols=65 Identities=9% Similarity=-0.096 Sum_probs=42.2
Q ss_pred CChhhHHHHHHHHHhcCChhH---HHHHHHHHhccC-C-CCchhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 442 PDAIGWATLLSSCRIHGNVEI---GKWAAESLLELD-P-YNPASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 442 p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
|+..+--.+..++.+.++... ++.+++.+.+.+ | ........|+-++.+.|++++|.++.+.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 455555556666665554444 777777766665 4 3445666777777777777777777777765
No 229
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.28 E-value=0.054 Score=45.32 Aligned_cols=73 Identities=12% Similarity=-0.022 Sum_probs=46.9
Q ss_pred cChHHHHHHHHHHHHcC---CHHHHHHHHHhC-CCC-C--ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHH
Q 006388 410 PIHDHYTCMIDILSRAG---RLEEAKSFINKM-PFP-P--DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYV 482 (647)
Q Consensus 410 p~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 482 (647)
++..+...+..++.+.+ +++++..++++. ... | ....+-.|.-++.+.|++++|.+.++.+++.+|+|..+..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 44444445555555555 344555555444 112 3 2445566777889999999999999999999998765443
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.09 E-value=1.4 Score=37.72 Aligned_cols=129 Identities=15% Similarity=0.126 Sum_probs=77.9
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHH
Q 006388 318 TFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRH 397 (647)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 397 (647)
+....+|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... |..+.--|.-.|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3455678888888877765 4567888888888888888888888877543 2233334444566655554
Q ss_pred HHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 006388 398 YFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKMPFPPDAIGWATLLSSCRIHGNVEIGKWAAESL 470 (647)
Q Consensus 398 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 470 (647)
+-+....+ | -++.-...+.-.|+++++.+++.+.+.-|... -....+|..+.|.++.+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 43333222 2 13333444556788888888887775323221 1123356666666666544
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.86 E-value=1.3 Score=37.87 Aligned_cols=102 Identities=8% Similarity=0.099 Sum_probs=55.9
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 006388 217 DMYCKCKSIKYAESVFRTMAWKNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQ 296 (647)
Q Consensus 217 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 296 (647)
+....+|+++.|.++.+.+ .+...|..|.......|+.+-|.+.|.+... +..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445667777777766655 3456777777777777777777777765432 2333333444555555444
Q ss_pred HHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 006388 297 FHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNE 335 (647)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 335 (647)
+-......|- ++.....+.-.|+++++.++|.+
T Consensus 82 la~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 82 MQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 4443333331 22333334445666665555544
No 232
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.61 E-value=0.58 Score=38.27 Aligned_cols=66 Identities=8% Similarity=-0.027 Sum_probs=45.2
Q ss_pred CCChhhHHHHHHHHHhcC---ChhHHHHHHHHHhccCCC-CchhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 441 PPDAIGWATLLSSCRIHG---NVEIGKWAAESLLELDPY-NPASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 441 ~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
.|+..+--.+..++.+.. +..+++.+++.+...+|. .......|+-+|.+.|++++|+++.+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 355555555555665544 345677777777777774 445666778888888888888888888776
No 233
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.30 E-value=0.26 Score=38.37 Aligned_cols=64 Identities=16% Similarity=-0.006 Sum_probs=54.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHhccC-------CCCchhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 443 DAIGWATLLSSCRIHGNVEIGKWAAESLLELD-------PYNPASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 443 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
++.-...|+..+...|+++.|...++.+++.. +..+.++..|+.+|.+.|++++|...+++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 44556688889999999999999999988752 33567799999999999999999999999876
No 234
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.10 E-value=1.9 Score=40.23 Aligned_cols=49 Identities=8% Similarity=0.021 Sum_probs=23.6
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc-CCHHHHHHHHhcCC
Q 006388 188 LALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKC-KSIKYAESVFRTMA 236 (647)
Q Consensus 188 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~-g~~~~A~~~~~~~~ 236 (647)
|+.++|++.|++.++.+...+..++....+.+++. |+.+.|.+.+++..
T Consensus 218 Gd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL 267 (301)
T 3u64_A 218 GGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRAL 267 (301)
T ss_dssp CCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 45555555555555544322344444445555442 55555555555443
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.87 E-value=0.38 Score=39.70 Aligned_cols=55 Identities=11% Similarity=-0.048 Sum_probs=39.6
Q ss_pred hcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhCCCc
Q 006388 456 IHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREKGVR 510 (647)
Q Consensus 456 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 510 (647)
..+|.++|..+|+.++.+...=+..+...+.--.+.|+.+.|.+++.+....+.+
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 3478888888888887764433555666666667888888888888888776654
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.82 E-value=0.79 Score=49.47 Aligned_cols=53 Identities=15% Similarity=0.079 Sum_probs=48.5
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHH
Q 006388 452 SSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTM 504 (647)
Q Consensus 452 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 504 (647)
.-|...|+++.|..+++++...-|.+..+|..|+.+|...|+|+.|.-.+..+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34667899999999999999999999999999999999999999999999877
No 237
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.42 E-value=11 Score=41.48 Aligned_cols=92 Identities=10% Similarity=-0.009 Sum_probs=50.3
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCC-----CC---CCC-cchHHHHH----HHHhCCCChHHH-HHHHHH----HHH
Q 006388 9 WNLLISGHASHGSVNDAVKVYNLMLKDG-----LG---NLS-RITFSTML----IMSSSRRCVDLG-RQIHGH----ILK 70 (647)
Q Consensus 9 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~---~~~-~~~~~~ll----~~~~~~~~~~~a-~~~~~~----~~~ 70 (647)
.+.|+.-|.+.|.+.+|+.+.-+..+.. +. ..+ ..+|..++ .++...-..+.- .++++. ..+
T Consensus 148 v~~iv~~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy~k 227 (963)
T 4ady_A 148 FERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLMN 227 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHh
Confidence 4667777888888888887765443221 10 111 23444444 333322222221 122222 222
Q ss_pred hCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC
Q 006388 71 FGFGSYVFVGSPLVDMYAKLGLIYDAKRGFDELP 104 (647)
Q Consensus 71 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 104 (647)
.. .| -|..++.++.+.++.+.+.++|+.+.
T Consensus 228 ~~-~~---dy~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 228 MP-NC---DYLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp SS-SC---CHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CC-ch---hHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22 12 35667778888899999999999864
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.37 E-value=0.81 Score=36.69 Aligned_cols=73 Identities=12% Similarity=-0.040 Sum_probs=42.9
Q ss_pred cChHHHHHHHHHHHHcCCHHH---HHHHHHhC-CCC-C--ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHH
Q 006388 410 PIHDHYTCMIDILSRAGRLEE---AKSFINKM-PFP-P--DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYV 482 (647)
Q Consensus 410 p~~~~~~~li~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 482 (647)
|+..+--.+..++.++....+ ++.+++.. ... | .....-.|.-++.+.|+++.|.+.++.+++.+|+|..+..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 444444444444444444333 44444443 111 2 1233445666788889999999999999999998765443
No 239
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.46 E-value=0.63 Score=37.51 Aligned_cols=65 Identities=8% Similarity=-0.028 Sum_probs=35.9
Q ss_pred CChhhHHHHHHHHHhcC---ChhHHHHHHHHHhccCCC-CchhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 442 PDAIGWATLLSSCRIHG---NVEIGKWAAESLLELDPY-NPASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 442 p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
|+..+--.+..++.+.. +..+|+.+++.+.+.+|. ....+..|+-++.+.|++++|.++.+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34444334444444333 334566666666665553 344555666666666777766666666654
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.20 E-value=5 Score=33.15 Aligned_cols=97 Identities=13% Similarity=0.306 Sum_probs=60.6
Q ss_pred CCChhHHHHHHHHHHhcCCh------hHHHHHHHHHHHCCCCCCHH----HHHHHHH---HHhccCChHHHHHHHHHHHH
Q 006388 237 WKNVVSWTAMLVGYGQNGCS------EEAVKIFCNMQRNGIEPDDF----TLGSVIS---SCANLASLEEGTQFHGRSLV 303 (647)
Q Consensus 237 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~----t~~~ll~---a~~~~~~~~~a~~~~~~~~~ 303 (647)
..|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|..+.- .+...++++.|+++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45778888888888888888 8888888888764 566531 1111111 11233677888888887766
Q ss_pred hCCCcchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 006388 304 TGLISFITVSNALVTFYGKCGNIEDSHRLFNE 335 (647)
Q Consensus 304 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 335 (647)
. .+.-..++......-.+.|++..|.+++.+
T Consensus 89 ~-hKkFAKiwi~~AqFEiRqgnl~kARkILg~ 119 (161)
T 4h7y_A 89 N-CKKFAFVHISFAQFELSQGNVKKSKQLLQK 119 (161)
T ss_dssp H-CTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred H-hHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 5 232355555555555566666666665554
No 241
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.70 E-value=14 Score=35.02 Aligned_cols=167 Identities=10% Similarity=0.055 Sum_probs=97.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChhHHHHH----HHHHHHCCCCCCHHHHHHHHHHHhcc
Q 006388 213 SALVDMYCKCKSIKYAESVFRTMAWKNVVSWTAMLVGYGQNGCSEEAVKI----FCNMQRNGIEPDDFTLGSVISSCANL 288 (647)
Q Consensus 213 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a~~~~ 288 (647)
.++..=|.+.+++++|.+++.. -...+.+.|+...|-++ .+-..+.+++++..+...++..+...
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~ 105 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAEL 105 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 4455667788888888876543 22345566776555443 45556678888888888777776553
Q ss_pred CChH-HHHHHHHHHHH----hC--CCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHc---CChH
Q 006388 289 ASLE-EGTQFHGRSLV----TG--LISFITVSNALVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKF---GKAN 358 (647)
Q Consensus 289 ~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~---g~~~ 358 (647)
..-+ .-..+...+++ .| -..++.....+...|.+.|++.+|+..|-.-...|...+..|+.-+... |...
T Consensus 106 p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~ 185 (312)
T 2wpv_A 106 DPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDS 185 (312)
T ss_dssp CTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred CCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcc
Confidence 3211 12333344433 22 2247778888999999999999998877632222444554444443333 3333
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 006388 359 ETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKE 405 (647)
Q Consensus 359 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 405 (647)
++--.+ -..++ -|.-.|++..|..+|+...+.
T Consensus 186 e~dlf~--------------~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 186 TVAEFF--------------SRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHH--------------HHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred hHHHHH--------------HHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 321111 11222 244568888888888876554
No 242
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.52 E-value=29 Score=38.40 Aligned_cols=247 Identities=11% Similarity=0.017 Sum_probs=127.6
Q ss_pred HHhcCCHHHHHHHHhcCCCC----C--hhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCC---H-HH-HHH--HHH
Q 006388 219 YCKCKSIKYAESVFRTMAWK----N--VVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGI--EPD---D-FT-LGS--VIS 283 (647)
Q Consensus 219 y~~~g~~~~A~~~~~~~~~~----~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~---~-~t-~~~--ll~ 283 (647)
....|+.+++..+++..... + +..-..+.-+....|..++++.++.......- .-+ . .. -.+ +.-
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 34456777888888876541 2 22334445566677776778887777654321 000 1 11 111 222
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-C--hhhHHHHHHHHHHcCChHH
Q 006388 284 SCANLASLEEGTQFHGRSLVTGLIS-FITVSNALVTFYGKCGNIEDSHRLFNEMNVR-D--EVSWTALVSGYAKFGKANE 359 (647)
Q Consensus 284 a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-d--~~~~~~li~~~~~~g~~~~ 359 (647)
++...++ +++...+..++...-.. .....-+|.-.|.-.|+-+....++..+... + +.-.-++.-++...|+.+.
T Consensus 464 a~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 464 AAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred HhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 2233333 34444444444322110 1122234455566778877777777655422 2 2222333344557799999
Q ss_pred HHHHHHHHHHCCCCCCHH-HHH---HHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHH
Q 006388 360 TIDLFEKMLSHGLKPDEV-TLI---GVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFI 435 (647)
Q Consensus 360 A~~~~~~m~~~g~~p~~~-t~~---~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 435 (647)
+..+.+.+... .|.. -|. .+.-+|+..|+.....+++..+.++ ...++.....+.-++.-.|+.+.+.+++
T Consensus 543 ~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 543 ADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 99898888863 3333 333 3345778889988888898888753 2333333333333344466666666666
Q ss_pred HhCCCCCChhhHH--HHHHHHHhcCCh-hHHHHHHHHHh
Q 006388 436 NKMPFPPDAIGWA--TLLSSCRIHGNV-EIGKWAAESLL 471 (647)
Q Consensus 436 ~~~~~~p~~~~~~--~ll~~~~~~~~~-~~a~~~~~~~~ 471 (647)
+.+....|..+-. .+.-+....|+. ..+...+..+.
T Consensus 618 ~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 618 QLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 6542122332222 222222323332 45666666654
No 243
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=89.29 E-value=7.6 Score=31.40 Aligned_cols=84 Identities=15% Similarity=0.114 Sum_probs=53.2
Q ss_pred hcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 006388 322 KCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEI 401 (647)
Q Consensus 322 ~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 401 (647)
.||++......+-.+.. +....+..+..+...|+-++-.+++..+.. +.+|++.....+..||.+.|+..++.+++.+
T Consensus 73 ~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 34555555444444332 333445566677777777777777777533 2467777777777788888888888877777
Q ss_pred HHHhcCC
Q 006388 402 MVKEYGI 408 (647)
Q Consensus 402 ~~~~~~~ 408 (647)
..+. |+
T Consensus 151 AC~k-G~ 156 (172)
T 1wy6_A 151 ACKK-GE 156 (172)
T ss_dssp HHHT-TC
T ss_pred HHHh-hh
Confidence 7654 54
No 244
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.91 E-value=17 Score=34.80 Aligned_cols=166 Identities=12% Similarity=0.100 Sum_probs=103.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHH----HHHHHCCCCCCHHHHHHHHHHHhcC
Q 006388 314 NALVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFGKANETIDLF----EKMLSHGLKPDEVTLIGVLSACSRA 389 (647)
Q Consensus 314 ~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~a~~~~ 389 (647)
.++..=|.+.+++++|.+++.. -...+.++|+...|.++- +-..+.++++|..+...++..+...
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 4455558888899988887643 234466777776666554 5555678888888887777776654
Q ss_pred CcHH-HHHHHHHHHHH---hcC--CCcChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHH
Q 006388 390 GLVE-KGRHYFEIMVK---EYG--IRPIHDHYTCMIDILSRAGRLEEAKSFINKMPFPPDAIGWATLLSSCRIHGNVEIG 463 (647)
Q Consensus 390 g~~~-~a~~~~~~~~~---~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 463 (647)
..-+ .=..+.+.+++ ++| -.-++.....+...|.+.|++.+|...|- .+..+++..+..++.-+...+..
T Consensus 108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~~--- 183 (336)
T 3lpz_A 108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDES--- 183 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSCG---
T ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcCC---
Confidence 4211 11222222221 123 23467778889999999999999999885 34344456666665555444332
Q ss_pred HHHHHHHhccCCCCchhHH-HHHHhhhhCCChhHHHHHHHHHHh
Q 006388 464 KWAAESLLELDPYNPASYV-LLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 464 ~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
.....|. ...--|...|+...|..+++...+
T Consensus 184 ------------~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 184 ------------HTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ------------GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------ccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2222222 223346678899999998877664
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.15 E-value=0.85 Score=45.43 Aligned_cols=68 Identities=15% Similarity=0.151 Sum_probs=53.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHH-----hCCCccCCC
Q 006388 447 WATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMR-----EKGVRKDPG 514 (647)
Q Consensus 447 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~~~~~ 514 (647)
...++.++...|+.+++...++.+...+|-+...+..|+.+|.+.|+..+|.+.|++.. +.|+.|.|.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 34456667778888888888888888888888888888888888888888888887764 358877653
No 246
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=86.91 E-value=8.2 Score=29.09 Aligned_cols=88 Identities=14% Similarity=0.090 Sum_probs=62.4
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006388 188 LALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMAWKNVVSWTAMLVGYGQNGCSEEAVKIFCNMQ 267 (647)
Q Consensus 188 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 267 (647)
...++|..+-+.+...+. ...+--.-+..+...|++++|..+.+....||..+|-+|-. .+.|..+++...+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356677777777666553 33333333456778899999999999999999999988865 36677788888777777
Q ss_pred HCCCCCCHHHHHH
Q 006388 268 RNGIEPDDFTLGS 280 (647)
Q Consensus 268 ~~g~~p~~~t~~~ 280 (647)
.+| .|....|..
T Consensus 97 ~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 97 RSQ-DPRIQTFVN 108 (116)
T ss_dssp TCC-CHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 776 555555543
No 247
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=86.80 E-value=35 Score=36.18 Aligned_cols=44 Identities=18% Similarity=0.046 Sum_probs=27.4
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCC
Q 006388 10 NLLISGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSR 55 (647)
Q Consensus 10 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~ 55 (647)
-.+|=.+.+.|.+++|.++.++....- ..-...|...+..+...
T Consensus 156 Wa~IyY~LR~G~~~~A~e~~~~~~~~~--~~~d~~F~~~l~~~~~s 199 (661)
T 2qx5_A 156 WALIFYLLRAGLIKEALQVLVENKANI--KKVEQSFLTYFKAYASS 199 (661)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHTGGGC-------CHHHHHHHC---
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhhH--hhhhHHHHHHHHHHHhC
Confidence 356778889999999999987765321 11224677777777643
No 248
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=85.86 E-value=7.8 Score=29.15 Aligned_cols=88 Identities=11% Similarity=0.121 Sum_probs=63.3
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006388 188 LALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMAWKNVVSWTAMLVGYGQNGCSEEAVKIFCNMQ 267 (647)
Q Consensus 188 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 267 (647)
...++|..+-+.+...+. ...+--.-+..+...|++++|..+.+....||..+|-+|-. .+.|..+++...+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356677777776666553 33333333456778899999999999999999999988765 47788888888888888
Q ss_pred HCCCCCCHHHHHH
Q 006388 268 RNGIEPDDFTLGS 280 (647)
Q Consensus 268 ~~g~~p~~~t~~~ 280 (647)
.+| .|....|..
T Consensus 96 ~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 96 GSS-DPALADFAA 107 (115)
T ss_dssp TCS-SHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 776 555555543
No 249
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=84.89 E-value=5.3 Score=33.62 Aligned_cols=22 Identities=9% Similarity=0.283 Sum_probs=12.1
Q ss_pred HHHHHHHcCCHHHHHHHHHhCC
Q 006388 418 MIDILSRAGRLEEAKSFINKMP 439 (647)
Q Consensus 418 li~~~~~~g~~~~A~~~~~~~~ 439 (647)
+..+|.+.|++++|+.+++..|
T Consensus 128 ia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHCCHHHHHHHHhcCC
Confidence 4445555555555555555554
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.61 E-value=4.2 Score=30.83 Aligned_cols=62 Identities=19% Similarity=0.288 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHH
Q 006388 357 ANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMID 420 (647)
Q Consensus 357 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 420 (647)
.-++.+-++.+....+.|+.....+.|.||.+..++..|.++|+.+..+- .+....|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHH
Confidence 44566667777777889999999999999999999999999999887643 334556777764
No 251
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.04 E-value=12 Score=28.25 Aligned_cols=86 Identities=10% Similarity=0.019 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 006388 291 LEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFGKANETIDLFEKMLSH 370 (647)
Q Consensus 291 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 370 (647)
.++|..|-+.+...+. ...+--.=+..+...|++++|..+.+....||...|-++-. .+.|..+++..-+.++..+
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4555555555555443 22222223344667899999999999988999999987754 4678888888777777776
Q ss_pred CCCCCHHHHHH
Q 006388 371 GLKPDEVTLIG 381 (647)
Q Consensus 371 g~~p~~~t~~~ 381 (647)
| .|....|..
T Consensus 98 g-~p~~q~Fa~ 107 (115)
T 2uwj_G 98 S-DPALADFAA 107 (115)
T ss_dssp S-SHHHHHHHH
T ss_pred C-CHHHHHHHH
Confidence 5 555555543
No 252
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=83.84 E-value=22 Score=31.19 Aligned_cols=14 Identities=21% Similarity=0.019 Sum_probs=5.3
Q ss_pred hHHHHHHHHHHhcC
Q 006388 210 FVGSALVDMYCKCK 223 (647)
Q Consensus 210 ~~~~~li~~y~~~g 223 (647)
.+-...+.++.+.|
T Consensus 127 ~vr~~a~~aL~~~~ 140 (211)
T 3ltm_A 127 FVRIAAAFALGEIG 140 (211)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcC
Confidence 33333333333333
No 253
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=83.79 E-value=31 Score=32.93 Aligned_cols=130 Identities=12% Similarity=0.085 Sum_probs=74.6
Q ss_pred HHHHHHhcCChHHHHHHhhcCCCCCeehHHHHHHHHHhCCChhHHHHHH----HHHHHCCCCCChhhHHHHHHHHhcCCC
Q 006388 114 MITGLLRRGLVEESRRLFRGMKDKDSISWTTMITGLMQNGLEREAIDLF----REMRLEGLAMDQFTFGSVLTACGGLLA 189 (647)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~pd~~t~~~ll~~~~~~~~ 189 (647)
+..=|.+.+++++|.+++.. -...+.+.|+...|-++- +-+.+.++++|..+...++..+.....
T Consensus 41 i~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~ 109 (336)
T 3lpz_A 41 VAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQP 109 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCT
T ss_pred HHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 33445555666666555422 233455667766655554 445567788888887777777766553
Q ss_pred hH-HHHHHHH----HHHHcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcC
Q 006388 190 LE-EGKQIHA----FIIRND--HKDNVFVGSALVDMYCKCKSIKYAESVFRTMAWKNVVSWTAMLVGYGQNG 254 (647)
Q Consensus 190 ~~-~a~~~~~----~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 254 (647)
-+ .=..+.. +-.+.| ...|+.....+...|.+.+++.+|+..|-.-..+.+..+..|+.-+...+
T Consensus 110 ~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 110 GEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp TCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred CCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 22 1122333 333334 34566777788888888888888888874322222355555544444433
No 254
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=83.73 E-value=9 Score=32.25 Aligned_cols=63 Identities=10% Similarity=-0.143 Sum_probs=45.0
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHHHHCC-CCCCCc-------chHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 006388 8 SWNLLISGHASHGSVNDAVKVYNLMLKDG-LGNLSR-------ITFSTMLIMSSSRRCVDLGRQIHGHILKF 71 (647)
Q Consensus 8 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 71 (647)
.+-.-+..+...|.++.|.-+.+.+.... . .|+. .++..+..++...+++..|...+++.++.
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~-~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNN-NPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-STTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcC-CcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 34445667788899999988887765432 1 3342 25677778888999999999999887554
No 255
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=83.50 E-value=12 Score=28.15 Aligned_cols=87 Identities=15% Similarity=0.143 Sum_probs=57.0
Q ss_pred ChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 006388 290 SLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFGKANETIDLFEKMLS 369 (647)
Q Consensus 290 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (647)
..++|..|-+.+...+. ...+--.=+..+...|++++|..+.+....||...|-++-. .+.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34555555555555543 22222223344667899999999999999999999987755 466777777777777776
Q ss_pred CCCCCCHHHHHH
Q 006388 370 HGLKPDEVTLIG 381 (647)
Q Consensus 370 ~g~~p~~~t~~~ 381 (647)
+| .|....|..
T Consensus 98 sg-~p~~q~Fa~ 108 (116)
T 2p58_C 98 SQ-DPRIQTFVN 108 (116)
T ss_dssp CC-CHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 65 455445543
No 256
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=82.58 E-value=5.8 Score=31.95 Aligned_cols=37 Identities=19% Similarity=0.185 Sum_probs=26.4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchh
Q 006388 444 AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPAS 480 (647)
Q Consensus 444 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 480 (647)
...+--|.-++.+.|+++.|.+..+.+++.+|+|..+
T Consensus 78 Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 78 RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 3445556667778888888888888888888876533
No 257
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.18 E-value=34 Score=33.63 Aligned_cols=159 Identities=11% Similarity=-0.034 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhcCCc-----HHHHHHHHHHHHHhcCCCcChH
Q 006388 343 SWTALVSGYAKFGKANETIDLFEKMLSHGLKPDEV----TLIGVLSACSRAGL-----VEKGRHYFEIMVKEYGIRPIHD 413 (647)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~g~-----~~~a~~~~~~~~~~~~~~p~~~ 413 (647)
+...|...|.+.|+.++..+++.....-=-..... ....++..+....+ ++-..+.++....+...-....
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-----CCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHhccC----CC---Cc
Q 006388 414 HYTCMIDILSRAGRLEEAKSFINKM-----PFPPD---AIGWATLLSSCRIHGNVEIGKWAAESLLELD----PY---NP 478 (647)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~~-----~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----p~---~~ 478 (647)
.=.-++..|...|++.+|.+++.++ ..... ..++..-+..|...+|+..+..++.++.... |+ -+
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Q ss_pred hhHHHHHHhhh-hCCChhHHHHHH
Q 006388 479 ASYVLLSSIYA-SKGKWDHVSQLR 501 (647)
Q Consensus 479 ~~~~~l~~~~~-~~g~~~~a~~~~ 501 (647)
.....-+-.+. ..++|.+|...|
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F 204 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYF 204 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHH
No 258
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=82.13 E-value=10 Score=43.74 Aligned_cols=124 Identities=6% Similarity=-0.150 Sum_probs=80.2
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCC-----------------
Q 006388 382 VLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM--PFPP----------------- 442 (647)
Q Consensus 382 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p----------------- 442 (647)
++..+...+..+.+.++..- .+.+...--.+..+|...|++++|.+.|++. ++.+
T Consensus 818 l~~~l~~~~~~~~~~~l~~~------~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHhhh------ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 44455555555555543321 1223333334556677788888888888776 1110
Q ss_pred ------ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCC-Cc----hhHHHHHHhhhhCCChhHHHHHHHHHHhCCCcc
Q 006388 443 ------DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPY-NP----ASYVLLSSIYASKGKWDHVSQLRRTMREKGVRK 511 (647)
Q Consensus 443 ------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~-~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 511 (647)
-...|..++..+.+++.++.+.++.+.+++..+. +. ..|..+...+...|++++|...+-.+.+...++
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~ 971 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKK 971 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCH
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHH
Confidence 1234566777788899999999999888876543 32 256778888899999999999998877655543
No 259
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=81.82 E-value=20 Score=32.99 Aligned_cols=207 Identities=14% Similarity=0.081 Sum_probs=99.5
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcc---hHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchh--hHHHHHH
Q 006388 11 LLISGHASHGSVNDAVKVYNLMLKDGLGNLSRI---TFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVF--VGSPLVD 85 (647)
Q Consensus 11 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~ 85 (647)
+.+...++.|+.+... .+.+.|. .++.. .-.+.+...+..|+.+ +.+.+++.|..++.. ...+.+.
T Consensus 7 ~~L~~A~~~g~~~~v~----~Ll~~g~-~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~ 77 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQ----QLLEGGA-NVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFL 77 (285)
T ss_dssp HHHHHHHHTTCHHHHH----HHHHTTC-CTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred hHHHHHHHcCCHHHHH----HHHHcCC-CcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHH
Confidence 4455566778765444 4445554 33322 1122334444556654 445555666554432 1223445
Q ss_pred HHHhcCChHHHHHHhccCCCCC---chHHHHHHHHHHhcCChHHHHHHhhcCCCCCee-------------hHHHHHHHH
Q 006388 86 MYAKLGLIYDAKRGFDELPEKN---IVMYNTMITGLLRRGLVEESRRLFRGMKDKDSI-------------SWTTMITGL 149 (647)
Q Consensus 86 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-------------~~~~li~~~ 149 (647)
..++.|+.+-+..+++.-..++ ...+ +.+...++.|+.+-...+++.-...+.. .++ .+...
T Consensus 78 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t-~L~~A 155 (285)
T 1wdy_A 78 LAAIAGSVKLLKLFLSKGADVNECDFYGF-TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT-ALMDA 155 (285)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCBCTTCC-BHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCC-HHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCCCccCcccC-CHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCc-HHHHH
Confidence 5567788887777777644332 2222 2344455677777777777664433221 112 23333
Q ss_pred HhCCChhHHHHHHHHHHHC-CCCCCh---hhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchh--HHHHHHHHHHhcC
Q 006388 150 MQNGLEREAIDLFREMRLE-GLAMDQ---FTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVF--VGSALVDMYCKCK 223 (647)
Q Consensus 150 ~~~g~~~~A~~~~~~m~~~-g~~pd~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g 223 (647)
+..|+.+-+ +.+.+. |..++. ...+.+..++ ..++.....++.+.+++.|..++.. ...+.+...++.|
T Consensus 156 ~~~~~~~~v----~~Ll~~~~~~~~~~~~~g~t~l~~a~-~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 230 (285)
T 1wdy_A 156 AEKGHVEVL----KILLDEMGADVNACDNMGRNALIHAL-LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK 230 (285)
T ss_dssp HHHTCHHHH----HHHHHTSCCCTTCCCTTSCCHHHHHH-HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTT
T ss_pred HHcCCHHHH----HHHHHhcCCCCCccCCCCCCHHHHHH-HccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence 444554433 333333 443332 2223333332 3344444456666667766554432 1122334445556
Q ss_pred CHHHHHHHHh
Q 006388 224 SIKYAESVFR 233 (647)
Q Consensus 224 ~~~~A~~~~~ 233 (647)
+.+-+..+++
T Consensus 231 ~~~~v~~Ll~ 240 (285)
T 1wdy_A 231 HLGLVQRLLE 240 (285)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHh
Confidence 6665555555
No 260
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=81.31 E-value=14 Score=30.09 Aligned_cols=72 Identities=11% Similarity=0.037 Sum_probs=44.5
Q ss_pred CcChHHHHHHHHHHHHcCCHH---HHHHHHHhC-CCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchh
Q 006388 409 RPIHDHYTCMIDILSRAGRLE---EAKSFINKM-PFPP--DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPAS 480 (647)
Q Consensus 409 ~p~~~~~~~li~~~~~~g~~~---~A~~~~~~~-~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 480 (647)
.|+..+--.+..++.++...+ +++.+++.. ...| .....--|.-++.+.|+++.|.+..+.+++.+|+|..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 344444444445555554332 344444443 1123 23344566678899999999999999999999988544
No 261
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=81.23 E-value=10 Score=37.57 Aligned_cols=68 Identities=15% Similarity=0.098 Sum_probs=45.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH----hcCCCcChHH
Q 006388 346 ALVSGYAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVK----EYGIRPIHDH 414 (647)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 414 (647)
.++..+...|++.+|+..+..+... -+-+...+..++.++.+.|+..+|++.|+...+ +.|+.|...+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3455666777777777777776654 233566777777777777777777777766533 4577776654
No 262
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.86 E-value=37 Score=34.20 Aligned_cols=186 Identities=9% Similarity=0.129 Sum_probs=119.7
Q ss_pred cCChhHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh-CCCcchh--HHHHHHHHHHhcC
Q 006388 253 NGCSEEAVKIFCNMQRN-----GIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVT-GLISFIT--VSNALVTFYGKCG 324 (647)
Q Consensus 253 ~g~~~~A~~~~~~m~~~-----g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~--~~~~li~~~~~~g 324 (647)
.|+++.|++.+..+.+. ...........++..|...++++...+....+.+. |...... ..+.+++......
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 37788999888776542 23445667788899999999999887777665543 3322221 1223333333333
Q ss_pred CH--HHHHHHHhhcCCC-C---------hhhHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCH---HHHHHHHHHHh
Q 006388 325 NI--EDSHRLFNEMNVR-D---------EVSWTALVSGYAKFGKANETIDLFEKMLSH--GLKPDE---VTLIGVLSACS 387 (647)
Q Consensus 325 ~~--~~A~~~~~~~~~~-d---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~---~t~~~ll~a~~ 387 (647)
.. +.-..+.+....- + ......|...|...|++.+|..++.++... |..+.. ..+...+..|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 32 2333444443311 1 123456778889999999999999998753 322221 25566677899
Q ss_pred cCCcHHHHHHHHHHHHHh-cCC--CcC--hHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006388 388 RAGLVEKGRHYFEIMVKE-YGI--RPI--HDHYTCMIDILSRAGRLEEAKSFINKM 438 (647)
Q Consensus 388 ~~g~~~~a~~~~~~~~~~-~~~--~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 438 (647)
..+++.+|..+++.+... ... .|+ ...|.+++..+...+++.+|...|.+.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999999887432 122 222 256788888889999999998887665
No 263
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=80.67 E-value=29 Score=39.94 Aligned_cols=165 Identities=12% Similarity=0.013 Sum_probs=94.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 006388 212 GSALVDMYCKCKSIKYAESVFRTMAWKNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASL 291 (647)
Q Consensus 212 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 291 (647)
...++..+.+.+..+.|.++..-.+. +..+--.+..+|...|++++|.+.|.+.- .|+..+..... ..
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~~----------~~ 882 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFA----------VL 882 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSCS----------SH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhcccchhhh----------hh
Confidence 34466667777777777776555443 44444556678888999999999997642 12222111000 00
Q ss_pred HHHHHHHHHHHHh-C-CCcchhHHHHHHHHHHhcCCHHHHHHHHhhc----CCCCh----hhHHHHHHHHHHcCChHHHH
Q 006388 292 EEGTQFHGRSLVT-G-LISFITVSNALVTFYGKCGNIEDSHRLFNEM----NVRDE----VSWTALVSGYAKFGKANETI 361 (647)
Q Consensus 292 ~~a~~~~~~~~~~-~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~d~----~~~~~li~~~~~~g~~~~A~ 361 (647)
.. +..+... . ...-..-|..++..+.+.+.++.+.++-... ...+. ..|..+..++...|++++|.
T Consensus 883 ~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 883 RE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp HH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred cc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 00 0011110 0 0112234555666677777766665544322 22221 25888999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHH
Q 006388 362 DLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEK 394 (647)
Q Consensus 362 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 394 (647)
..+-.+.....+ ...+..++...+..|..+.
T Consensus 959 ~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 959 VALMVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred HHHHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 999888765433 4456666666665555443
No 264
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=78.34 E-value=9.6 Score=28.90 Aligned_cols=61 Identities=11% Similarity=0.067 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 006388 156 REAIDLFREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVD 217 (647)
Q Consensus 156 ~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 217 (647)
=+..+-++.+....+.|+.....+.|+||.+.+++..|.++++-+...- .+...+|..+++
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 3555666666677788899999999999999999999998888776543 233445665543
No 265
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=77.80 E-value=22 Score=38.41 Aligned_cols=52 Identities=15% Similarity=0.036 Sum_probs=37.3
Q ss_pred HhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 006388 386 CSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKMP 439 (647)
Q Consensus 386 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 439 (647)
|...|+++-|+++-+..+.- .+.+-.+|..|...|...|+++.|+-.++.+|
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 55677888888777776642 23345778888888888888888888877775
No 266
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=77.45 E-value=8.9 Score=30.81 Aligned_cols=61 Identities=18% Similarity=0.287 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHH
Q 006388 358 NETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMID 420 (647)
Q Consensus 358 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 420 (647)
-+..+-++.+....+.|+.......|.+|.+..++..|.++|+..+.+ ..+....|..+++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 345566666667778999999999999999999999999999988764 3444567777764
No 267
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=74.73 E-value=38 Score=31.96 Aligned_cols=62 Identities=11% Similarity=0.157 Sum_probs=46.7
Q ss_pred HHHhCCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhCCC
Q 006388 434 FINKMPFPPD--AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREKGV 509 (647)
Q Consensus 434 ~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 509 (647)
+|...+++|. ..++.+-++.+.+++|+..|..+.++++++.|.. ...++|.++...-.+.+.
T Consensus 195 YFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~--------------~~a~qArkil~~ce~~~~ 258 (325)
T 3mv2_A 195 YFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSG--------------PRAEQARKIKNKADSMAS 258 (325)
T ss_dssp HGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS--------------HHHHHHHHHHHHHHTSCC
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH--------------HHHHHHHHHHHHHhcCCC
Confidence 4555567775 5677788888999999999999999999999842 234567788777665443
No 268
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=74.42 E-value=42 Score=28.97 Aligned_cols=76 Identities=11% Similarity=0.066 Sum_probs=32.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 006388 208 NVFVGSALVDMYCKCKSIKYAESVFRTMAWKNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCAN 287 (647)
Q Consensus 208 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 287 (647)
+..+-...+.+..+.+..+....+.+.+..++...-...+.++...|. .++...+..+... ++...-...+.++.+
T Consensus 120 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 120 DWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLET 195 (201)
T ss_dssp SHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHH
Confidence 333434444444444443333333333334444444444444544443 3455555555432 344443444444433
No 269
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=74.21 E-value=60 Score=30.67 Aligned_cols=167 Identities=12% Similarity=0.030 Sum_probs=102.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHhcC
Q 006388 314 NALVTFYGKCGNIEDSHRLFNEMNVRDEVSWTALVSGYAKFGKANETIDL----FEKMLSHGLKPDEVTLIGVLSACSRA 389 (647)
Q Consensus 314 ~~li~~~~~~g~~~~A~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a~~~~ 389 (647)
.++..=|.+.+++++|.+++.. -...+.++|+...|.++ .+-..+.+++++......++..+..-
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~ 105 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAEL 105 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 4555668888889998887643 23456677887776665 45555678899988888777766552
Q ss_pred CcHH-HHHHHHHHHHH---hcC--CCcChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhc---CCh
Q 006388 390 GLVE-KGRHYFEIMVK---EYG--IRPIHDHYTCMIDILSRAGRLEEAKSFINKMPFPPDAIGWATLLSSCRIH---GNV 460 (647)
Q Consensus 390 g~~~-~a~~~~~~~~~---~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~---~~~ 460 (647)
..-+ .=.++.+.+++ +.| -.-++.....+...|.+.|++.+|...|-... .-|...+..++.-+... |..
T Consensus 106 p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~-~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 106 DPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT-HDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CccHHHHHHHHHHHHHhcCCCCc
Confidence 2111 11223333321 112 22467888899999999999999999876321 11355565555555444 433
Q ss_pred hHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHh
Q 006388 461 EIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMRE 506 (647)
Q Consensus 461 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 506 (647)
.++-..+- ...--|...|+...|..+++...+
T Consensus 185 ~e~dlf~~--------------RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 185 STVAEFFS--------------RLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHH--------------HHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred chHHHHHH--------------HHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33222211 122345678899999999887754
No 270
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=73.69 E-value=11 Score=34.58 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=24.6
Q ss_pred hcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006388 387 SRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM 438 (647)
Q Consensus 387 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 438 (647)
.+.|.++++++....-++ .-+-|...-..|+..|+-.|+++.|.+-++..
T Consensus 8 l~~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp TTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 344555555555544444 22334444455555555555555555444433
No 271
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=72.74 E-value=99 Score=32.54 Aligned_cols=197 Identities=8% Similarity=-0.095 Sum_probs=108.2
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHH----HHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 006388 153 GLEREAIDLFREMRLEGLAMDQFTFGS----VLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYA 228 (647)
Q Consensus 153 g~~~~A~~~~~~m~~~g~~pd~~t~~~----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 228 (647)
.+.+.|...|......+ ..+...... +.......+...++...+....... .+..+..-.+..-.+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 37899999999886543 223333222 2223334443455555555544432 3333344455556678999999
Q ss_pred HHHHhcCCCCC---hhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 006388 229 ESVFRTMAWKN---VVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTG 305 (647)
Q Consensus 229 ~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 305 (647)
...|+.|.... ....--+..++...|+.++|..+|..+... . +|-.++.+ .+.|..-.. .. ..
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~--~fYg~lAa-~~Lg~~~~~-~~------~~ 370 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R--GFYPMVAA-QRIGEEYEL-KI------DK 370 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C--SHHHHHHH-HHTTCCCCC-CC------CC
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C--ChHHHHHH-HHcCCCCCC-CC------CC
Confidence 99999998642 222333455778899999999999998742 2 34444432 222221000 00 00
Q ss_pred CCc---c---hhHHHHHHHHHHhcCCHHHHHHHHhhcCC-CChhhHHHHHHHHHHcCChHHHHHHHHH
Q 006388 306 LIS---F---ITVSNALVTFYGKCGNIEDSHRLFNEMNV-RDEVSWTALVSGYAKFGKANETIDLFEK 366 (647)
Q Consensus 306 ~~~---~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~d~~~~~~li~~~~~~g~~~~A~~~~~~ 366 (647)
..+ . ..-.-.-+..+...|....|...+..+.. .+......+.......|.++.++.....
T Consensus 371 ~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 371 APQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp CCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 000 0 00111234456678888888877766543 3433333444444567777777655543
No 272
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=68.45 E-value=8.4 Score=35.36 Aligned_cols=57 Identities=19% Similarity=0.185 Sum_probs=42.4
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 006388 421 ILSRAGRLEEAKSFINKM-PFPP-DAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYN 477 (647)
Q Consensus 421 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 477 (647)
.+.+.|.+++|++..... .-.| |...-..|+.-++..|+++.|..-++.+.+++|..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 455778888888776554 3344 56666677788888888888888888888888853
No 273
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=65.78 E-value=63 Score=29.38 Aligned_cols=16 Identities=13% Similarity=0.102 Sum_probs=8.7
Q ss_pred HHHhcCCHHHHHHHHh
Q 006388 319 FYGKCGNIEDSHRLFN 334 (647)
Q Consensus 319 ~~~~~g~~~~A~~~~~ 334 (647)
..++.|+.+-+..+++
T Consensus 225 ~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 225 LAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHh
Confidence 3444566655555555
No 274
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=64.31 E-value=37 Score=27.30 Aligned_cols=60 Identities=12% Similarity=0.077 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 006388 157 EAIDLFREMRLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRNDHKDNVFVGSALVD 217 (647)
Q Consensus 157 ~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 217 (647)
+..+-++.+....+.|+.......|++|.+.+++..|.++++-+...- .+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 455556666667788999999999999999999999999988776543 333455665543
No 275
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.72 E-value=22 Score=35.65 Aligned_cols=92 Identities=8% Similarity=-0.072 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-----CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhccC--CCCch----hHH
Q 006388 414 HYTCMIDILSRAGRLEEAKSFINKM-----PFPPDAIGWATLLSSCRIHGNVEIGKWAAESLLELD--PYNPA----SYV 482 (647)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--p~~~~----~~~ 482 (647)
.+..+.+.|.+.|++++|.+.+.++ ....-...+-..+..+...+|+..+...++++.... ..++. ...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 3444555566666666666666555 111124455555556666666666666666554321 11111 122
Q ss_pred HHHHhhhhCCChhHHHHHHHHHH
Q 006388 483 LLSSIYASKGKWDHVSQLRRTMR 505 (647)
Q Consensus 483 ~l~~~~~~~g~~~~a~~~~~~m~ 505 (647)
.-+.++...++|.+|.+.|-...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHh
Confidence 23344455666766666665543
No 276
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=58.51 E-value=87 Score=27.58 Aligned_cols=86 Identities=9% Similarity=0.094 Sum_probs=42.9
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCCcc---hHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhh--HHHHHHHH
Q 006388 13 ISGHASHGSVNDAVKVYNLMLKDGLGNLSRI---TFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFV--GSPLVDMY 87 (647)
Q Consensus 13 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~ 87 (647)
+...++.|+.+....+++.+.+.|. .++.. -.+.| ...+..|+.+ +.+.+++.|..++... ..+.+...
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~~~~~g~t~L-~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A 86 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGR-ELDIYNNLRQTPL-HLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLA 86 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTC-CSCCCCTTSCCHH-HHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC-CCCcccccCCCHH-HHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHH
Confidence 3344567777777777776666654 33322 22223 3333445543 3444555565443221 12234444
Q ss_pred HhcCChHHHHHHhccCC
Q 006388 88 AKLGLIYDAKRGFDELP 104 (647)
Q Consensus 88 ~~~g~~~~A~~~~~~~~ 104 (647)
+..|+.+-...+++...
T Consensus 87 ~~~~~~~~~~~Ll~~~~ 103 (241)
T 1k1a_A 87 CEHRSPTCLRALLDSAA 103 (241)
T ss_dssp HHTTCHHHHHHHHHHSC
T ss_pred HHcCCHHHHHHHHHcCC
Confidence 55666666666665543
No 277
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.46 E-value=68 Score=31.98 Aligned_cols=60 Identities=15% Similarity=0.152 Sum_probs=29.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 006388 344 WTALVSGYAKFGKANETIDLFEKMLSHGLKPDE--VTLIGVLSACSRAGLVEKGRHYFEIMV 403 (647)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~ 403 (647)
+..+..-|.+.|++++|.+.|.++...-..+.. ..+..++..+...+++..+...++.+.
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 334444455555555555555555543222221 244444555555555555555555543
No 278
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=56.86 E-value=99 Score=26.90 Aligned_cols=103 Identities=13% Similarity=0.167 Sum_probs=70.1
Q ss_pred HHHHHHHHhCC-CCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHhc--cCCCCchhHHHHHHhhhhCCChhHHHHHHH
Q 006388 429 EEAKSFINKMP-FPPD---AIGWATLLSSCRIHGNVEIGKWAAESLLE--LDPYNPASYVLLSSIYASKGKWDHVSQLRR 502 (647)
Q Consensus 429 ~~A~~~~~~~~-~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 502 (647)
+.+...|...+ .+.| ...|-.++..| ..++...+..+|..+.. ++-.-+..|...+..+...|++.+|.++++
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444454442 3445 34555555544 24446688888888775 455677889999999999999999999999
Q ss_pred HHHhCCCccCCCcceEeEcCeEEEEEecCCCCcchHHHHHHHHHHHHhhHhcCcc
Q 006388 503 TMREKGVRKDPGCSWIKYKSRVHIFSADDWSSPYSDQIYAELEKLNRKMIKEGYV 557 (647)
Q Consensus 503 ~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 557 (647)
.-.+++-+|. ........+...+|.+.+++
T Consensus 140 ~GI~~~A~P~-------------------------~rL~~~~~~F~~R~~~~~~~ 169 (202)
T 3esl_A 140 LGAENNCRPY-------------------------NRLLRSLSNYEDRLREMNIV 169 (202)
T ss_dssp HHHHTTCBSH-------------------------HHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCccH-------------------------HHHHHHHHHHHHHHHhcCCC
Confidence 9888777652 22334556677788887773
No 279
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=56.48 E-value=59 Score=25.98 Aligned_cols=63 Identities=19% Similarity=0.300 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCC---hhhHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCC
Q 006388 313 SNALVTFYGKCGNIEDSHRLFNEMNVRD---EVSWTALVSGYAKFGK--ANETIDLFEKMLSHGLKPD 375 (647)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~~~~~~~~~d---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 375 (647)
.+.++.-|...|+.++|.+.++++..|. .....++..++-+.++ .+.+..++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 3567888888999999999999987662 2334444555554432 3567778888877765444
No 280
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=53.54 E-value=2.3e+02 Score=30.04 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=19.0
Q ss_pred CchhHHHHHHh---h--hhCCChhHHHHHHHHH
Q 006388 477 NPASYVLLSSI---Y--ASKGKWDHVSQLRRTM 504 (647)
Q Consensus 477 ~~~~~~~l~~~---~--~~~g~~~~a~~~~~~m 504 (647)
+..++..|.++ + .+.|+|++|.+.++++
T Consensus 532 ~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 532 NKEICMLLLNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 33455544433 3 7899999999888864
No 281
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=52.84 E-value=1.1e+02 Score=26.16 Aligned_cols=48 Identities=17% Similarity=0.111 Sum_probs=19.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC
Q 006388 208 NVFVGSALVDMYCKCKSIKYAESVFRTMAWKNVVSWTAMLVGYGQNGC 255 (647)
Q Consensus 208 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 255 (647)
+..+....+..+.+.|..+....+.+.+..++...-...+.++...|.
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 333333344444444443333333333444444443344444444443
No 282
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=51.45 E-value=1.6e+02 Score=27.67 Aligned_cols=26 Identities=8% Similarity=0.254 Sum_probs=15.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCC
Q 006388 213 SALVDMYCKCKSIKYAESVFRTMAWK 238 (647)
Q Consensus 213 ~~li~~y~~~g~~~~A~~~~~~~~~~ 238 (647)
..++.-|...|+.++|...++++..+
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~p 32 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNLG 32 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCc
Confidence 34555666666666666666666544
No 283
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=51.39 E-value=1.2e+02 Score=26.17 Aligned_cols=18 Identities=11% Similarity=0.183 Sum_probs=7.7
Q ss_pred CCHHHHHHHHHHHhccCC
Q 006388 273 PDDFTLGSVISSCANLAS 290 (647)
Q Consensus 273 p~~~t~~~ll~a~~~~~~ 290 (647)
+|...-...+.++...++
T Consensus 93 ~~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGD 110 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 344444444444444443
No 284
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=50.74 E-value=1.6e+02 Score=28.88 Aligned_cols=113 Identities=15% Similarity=0.090 Sum_probs=52.7
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCCcch--HHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchh--hHHHHHHHHH
Q 006388 13 ISGHASHGSVNDAVKVYNLMLKDGLGNLSRIT--FSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVF--VGSPLVDMYA 88 (647)
Q Consensus 13 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~ 88 (647)
+..-+..|+.+-+ +.+.+.|. .++... ..+.+...+..|+.+-++ .+++.|...+.. ...+.+...+
T Consensus 18 L~~Aa~~g~~~~v----~~Ll~~g~-~~~~~~~~~~t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~ 88 (437)
T 1n11_A 18 LHVASFMGHLPIV----KNLLQRGA-SPNVSNVKVETPLHMAARAGHTEVAK----YLLQNKAKVNAKAKDDQTPLHCAA 88 (437)
T ss_dssp HHHHHHHTCHHHH----HHHHHTTC-CSCCSSSCCCCHHHHHHHHTCHHHHH----HHHHHTCCSSCCCTTSCCHHHHHH
T ss_pred HHHHHHCCCHHHH----HHHHHcCC-CCCCCCCCCCCHHHHHHHcCCHHHHH----HHHhCCCCCCCCCCCCCCHHHHHH
Confidence 3334455665433 34444554 443321 112233334445554443 344445433321 1223445556
Q ss_pred hcCChHHHHHHhccCCCCCch--HHHHHHHHHHhcCChHHHHHHhhcC
Q 006388 89 KLGLIYDAKRGFDELPEKNIV--MYNTMITGLLRRGLVEESRRLFRGM 134 (647)
Q Consensus 89 ~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~ 134 (647)
+.|+.+-...+++.-..++.. .-.+-+...++.|+.+....+++.-
T Consensus 89 ~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~ 136 (437)
T 1n11_A 89 RIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 136 (437)
T ss_dssp HHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Confidence 677777777777654433221 1112334445666776666666553
No 285
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=50.26 E-value=76 Score=27.98 Aligned_cols=85 Identities=6% Similarity=-0.131 Sum_probs=46.4
Q ss_pred HHHhCCCChHHHHHHHHHHHHhCCCCchhh--HHHHHHHHHhcCChHHHHHHhccCCCCCchH--HHHHHHHHHhcCChH
Q 006388 50 IMSSSRRCVDLGRQIHGHILKFGFGSYVFV--GSPLVDMYAKLGLIYDAKRGFDELPEKNIVM--YNTMITGLLRRGLVE 125 (647)
Q Consensus 50 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~ 125 (647)
...+..|+.+..+.+++.+.+.|..++... ..+.+...+..|+.+-...+++.-..++... -.+.+...++.|+.+
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 93 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPT 93 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHH
Confidence 334556888888888887777665444321 2234555567788877777776544322211 112233334555555
Q ss_pred HHHHHhhcC
Q 006388 126 ESRRLFRGM 134 (647)
Q Consensus 126 ~A~~~~~~~ 134 (647)
-...+++..
T Consensus 94 ~~~~Ll~~~ 102 (241)
T 1k1a_A 94 CLRALLDSA 102 (241)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHcC
Confidence 555555543
No 286
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=48.07 E-value=54 Score=27.13 Aligned_cols=63 Identities=19% Similarity=0.300 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCC---hhhHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCC
Q 006388 313 SNALVTFYGKCGNIEDSHRLFNEMNVRD---EVSWTALVSGYAKFGK--ANETIDLFEKMLSHGLKPD 375 (647)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~~~~~~~~~d---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 375 (647)
.+.++.-|...|+.++|.+.++++..|. .....++..++-+.++ .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 3567888888999999999999987662 2344444555554322 3456777777777664443
No 287
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=47.17 E-value=61 Score=28.50 Aligned_cols=91 Identities=12% Similarity=0.044 Sum_probs=41.1
Q ss_pred CCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcc--hHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhh
Q 006388 2 PFHDGVSWNLLISGHASHGSVNDAVKVYNLMLKDGLGNLSRI--TFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFV 79 (647)
Q Consensus 2 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 79 (647)
+..|....+.|..+ ++.|+.+.. +.+.+.|. .++.. .-.+.+...+..|+.+.. +.+++.|..++...
T Consensus 3 ~~~d~~~~~~l~~A-~~~g~~~~~----~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~~~~~~~~~ 72 (240)
T 3eu9_A 3 THIDDYSTWDIVKA-TQYGIYERC----RELVEAGY-DVRQPDKENVTLLHWAAINNRIDLV----KYYISKGAIVDQLG 72 (240)
T ss_dssp CCCSCGGGCCHHHH-HHTTCHHHH----HHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCB
T ss_pred cccccccchHHHHH-HHcCChHHH----HHHHHcCC-CcCCCCCCCCCHHHHHHHhCCHHHH----HHHHHcCCcchhhc
Confidence 34455555555554 456665444 33444554 33221 111233344445555433 34444554332111
Q ss_pred ---HHHHHHHHHhcCChHHHHHHhcc
Q 006388 80 ---GSPLVDMYAKLGLIYDAKRGFDE 102 (647)
Q Consensus 80 ---~~~li~~~~~~g~~~~A~~~~~~ 102 (647)
..+.+...+..|+.+-...+++.
T Consensus 73 ~~~~~t~L~~A~~~~~~~~v~~Ll~~ 98 (240)
T 3eu9_A 73 GDLNSTPLHWATRQGHLSMVVQLMKY 98 (240)
T ss_dssp TTTTBCHHHHHHHHTCHHHHHHHHHT
T ss_pred CCcCCChhHHHHHcCCHHHHHHHHHc
Confidence 12334445556666666666654
No 288
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=44.87 E-value=1.4e+02 Score=27.40 Aligned_cols=186 Identities=9% Similarity=-0.042 Sum_probs=89.1
Q ss_pred CCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCC---CchHHHHHH
Q 006388 39 NLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFVGSPLVDMYAKLGLIYDAKRGFDELPEK---NIVMYNTMI 115 (647)
Q Consensus 39 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li 115 (647)
..|..-.+.|..+ +..|+.+..+. +++.|..++..-..+.+...+..|+.+-+..+++.-..+ |..-++ -+
T Consensus 26 ~~d~~g~t~L~~A-~~~g~~~~v~~----Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t-~L 99 (285)
T 3kea_A 26 KADVHGHSASYYA-IADNNVRLVCT----LLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNT-AL 99 (285)
T ss_dssp CCCTTSCCHHHHH-HHTTCHHHHHH----HHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCC-HH
T ss_pred ccCCCCCCHHHHH-HHcCCHHHHHH----HHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCc-HH
Confidence 3344333344333 33556554433 344454443333334555566777777777777654432 222222 33
Q ss_pred HHHHhcCChHHHHHHhhcCCC---CCeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh-hHHHHHHHHhcCCChH
Q 006388 116 TGLLRRGLVEESRRLFRGMKD---KDSISWTTMITGLMQNGLEREAIDLFREMRLEGLAMDQF-TFGSVLTACGGLLALE 191 (647)
Q Consensus 116 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~~~~~~~~~~ 191 (647)
...+..|+.+-+.-+++.-.. ++...|.+.+...+..|+.+ +.+.+.+.|..+... .-.+.+...+..|+.+
T Consensus 100 ~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~ 175 (285)
T 3kea_A 100 YYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVS----IVSYFLSEIPSTFDLAILLSCIHITIKNGHVD 175 (285)
T ss_dssp HHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHH----HHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCccccccCCccHHHHHHHcChHH
Confidence 444566777777777665332 23333334445555666654 334444445433221 2334444455667776
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 006388 192 EGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTM 235 (647)
Q Consensus 192 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 235 (647)
-++-+++.-..... .+..-.+..+..-++.|+.+-+.-+++.-
T Consensus 176 ~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~~~v~~Ll~~g 218 (285)
T 3kea_A 176 MMILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDIEMLQALFKYD 218 (285)
T ss_dssp HHHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCHHHHHHHTTSC
T ss_pred HHHHHHHcCCCCCc-ccCCCCChHHHHHHHcCCHHHHHHHHHcC
Confidence 66555544332221 11111122234445567766666665553
No 289
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=44.13 E-value=41 Score=30.46 Aligned_cols=95 Identities=13% Similarity=0.036 Sum_probs=51.3
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcc-------hHHHHHHHHh--CCCChHHHHHHHHHHHHhC-------
Q 006388 9 WNLLISGHASHGSVNDAVKVYNLMLKDGLGNLSRI-------TFSTMLIMSS--SRRCVDLGRQIHGHILKFG------- 72 (647)
Q Consensus 9 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-------~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g------- 72 (647)
.+.|. ..++.|+.+....+++.+.+.|. .++.. -.+.|..+.. +.|+.+-++.+++.-...+
T Consensus 6 ~~~L~-~A~~~g~~~~v~~ll~~l~~~~~-~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 83 (260)
T 3jxi_A 6 RPILF-DIVSRGSPDGLEGLLSFLLTHKK-RLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFIN 83 (260)
T ss_dssp HHHHH-HHHHHTCGGGGTTHHHHHHHHTC-CTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHT
T ss_pred HHHHH-HHHHhCCHHHHHHHHHHHHhcCC-CcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhc
Confidence 34433 34567889888888888877765 44432 2344444442 5677777766666543311
Q ss_pred --CCCchhhHHHHHHHHHhcCChHHHHHHhccCCC
Q 006388 73 --FGSYVFVGSPLVDMYAKLGLIYDAKRGFDELPE 105 (647)
Q Consensus 73 --~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 105 (647)
+........+.+...+..|+.+-+..+++.-..
T Consensus 84 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 118 (260)
T 3jxi_A 84 SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD 118 (260)
T ss_dssp CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence 000000122234444566777766666665443
No 290
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=44.08 E-value=2e+02 Score=27.05 Aligned_cols=30 Identities=10% Similarity=-0.110 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 006388 343 SWTALVSGYAKFGKANETIDLFEKMLSHGL 372 (647)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 372 (647)
+...-+....+.+++..|..+-+++++.+.
T Consensus 209 aLr~AM~~a~K~KNy~tAa~fArrLLel~p 238 (325)
T 3mv2_A 209 ALQVAMSQHFKHKNFLQASYFAGEFLKIIS 238 (325)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 455566777888899999888888888653
No 291
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=43.87 E-value=1.4e+02 Score=24.68 Aligned_cols=77 Identities=10% Similarity=0.015 Sum_probs=52.6
Q ss_pred HHHHHHHHhCC-CCCChh---hHHHHHHHHHhcCChhHHHHHHHHHhcc--CCCCchhHHHHHHhhhhCCChhHHHHHHH
Q 006388 429 EEAKSFINKMP-FPPDAI---GWATLLSSCRIHGNVEIGKWAAESLLEL--DPYNPASYVLLSSIYASKGKWDHVSQLRR 502 (647)
Q Consensus 429 ~~A~~~~~~~~-~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 502 (647)
+.+...|..-+ .+.|+. .|-..+.. .+.+..+|+.+... +-.-+..|...+..+...|++.+|.++++
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~ya~~------~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 125 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKFAEY------NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQ 125 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHTT------BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHh------cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44455665542 344533 34333332 23377888887764 45567789999999999999999999999
Q ss_pred HHHhCCCcc
Q 006388 503 TMREKGVRK 511 (647)
Q Consensus 503 ~m~~~g~~~ 511 (647)
.-.+++-+|
T Consensus 126 ~Gi~~~A~P 134 (152)
T 4a1g_A 126 RGIQNQAEP 134 (152)
T ss_dssp HHHHTTCBS
T ss_pred HHHHcCCcc
Confidence 988877655
No 292
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=43.60 E-value=23 Score=26.01 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=23.6
Q ss_pred chHHHHHHHHHHHHhhHhcCcccCCcccc
Q 006388 536 YSDQIYAELEKLNRKMIKEGYVPDMSSVL 564 (647)
Q Consensus 536 ~~~~~~~~l~~l~~~m~~~g~~pd~~~~~ 564 (647)
....|...+++...+++..|+.||...+-
T Consensus 14 dlirIl~~ieekinELk~dG~ePDIiL~G 42 (103)
T 2pk8_A 14 DLIRILGEIEEKMNELKMDGFNPDIILFG 42 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCEEEEC
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCeEEEc
Confidence 44567788888899999999999987663
No 293
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=42.10 E-value=76 Score=25.32 Aligned_cols=63 Identities=13% Similarity=0.184 Sum_probs=41.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCC---hhHHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCH
Q 006388 213 SALVDMYCKCKSIKYAESVFRTMAWKN---VVSWTAMLVGYGQNGC--SEEAVKIFCNMQRNGIEPDD 275 (647)
Q Consensus 213 ~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 275 (647)
+.++.-|...|+.++|.+.++++..|. ......+..++-+.+. .+....++..+...|+-+..
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 457777888888999988888887652 2334444455555432 35567777778777754443
No 294
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=41.71 E-value=8.6 Score=26.45 Aligned_cols=21 Identities=24% Similarity=0.553 Sum_probs=17.6
Q ss_pred ceEEEecCCccccccCcccCC
Q 006388 623 REILVRDAVRFHLFKNGECSC 643 (647)
Q Consensus 623 ~~~~~~~~~~~h~~~~g~csc 643 (647)
..|=+.|.+..|+|+|||-+-
T Consensus 8 k~v~LkDGstvyiFKDGKMam 28 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGM 28 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEE
T ss_pred eeEecCCCcEEEEEcCCceeh
Confidence 467788999999999998653
No 295
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=41.62 E-value=90 Score=29.41 Aligned_cols=126 Identities=16% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHc-----
Q 006388 351 YAKFGKANETIDLFEKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRA----- 425 (647)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~----- 425 (647)
+...|++++|+..|+..+ +...+.......+.+++.++.....+- ....-++.--+.
T Consensus 112 ~~t~gKf~eAl~~Fr~iL----------~~i~l~~v~~~~e~~e~~eli~icreY--------ilal~iEl~Rr~l~~~~ 173 (320)
T 3mkr_B 112 LTTVGKFEEAVEKFRSIL----------LSVPLLVVDNKQEIAEAQQLITICREY--------IVGLSMETERKKLPKET 173 (320)
T ss_dssp HHHTTCHHHHHHHHHHHH----------HHGGGCCCCSHHHHHHHHHHHHHHHHH--------HHHHHHHHHHTTSCCCS
T ss_pred HHhcCCHHHHHHHHHHHH----------HHhhheeeccHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhcccCC
Q ss_pred ----CCHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHHH
Q 006388 426 ----GRLEEAKSFINKMPFPPD--AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVSQ 499 (647)
Q Consensus 426 ----g~~~~A~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 499 (647)
.+--|-..+|...+++|. ..++.+-++...+++|+..|..+.++++++.| .....++|.+
T Consensus 174 ~~~~kR~lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p--------------~~~~~~qArk 239 (320)
T 3mkr_B 174 LEQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGP--------------KPEVAQQTRK 239 (320)
T ss_dssp HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCC--------------CHHHHHHHHH
T ss_pred chhHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC--------------CHHHHHHHHH
Q ss_pred HHHHHHhCC
Q 006388 500 LRRTMREKG 508 (647)
Q Consensus 500 ~~~~m~~~g 508 (647)
+...-.+.+
T Consensus 240 il~~ce~~~ 248 (320)
T 3mkr_B 240 ILSACEKNP 248 (320)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHhcCC
No 296
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=41.07 E-value=80 Score=28.72 Aligned_cols=99 Identities=7% Similarity=-0.006 Sum_probs=55.2
Q ss_pred CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-------CcchHHHHHHHHh--CCCChHHHHHHHHHHHHhC--
Q 006388 4 HDGVSWNLLISGHASHGSVNDAVKVYNLMLKDGLGNL-------SRITFSTMLIMSS--SRRCVDLGRQIHGHILKFG-- 72 (647)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-------~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g-- 72 (647)
+|..-++.|..+ ++.|+.+....+++...+.+. .. |..-++.|..++. +.|+.+-++.+++.-...+
T Consensus 9 ~d~~g~t~L~~A-~~~g~~~~v~~Ll~~~~~~~~-~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~ 86 (273)
T 2pnn_A 9 PRLYDRRSIFDA-VAQSNCQELESLLPFLQRSKK-RLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL 86 (273)
T ss_dssp --CCCHHHHHHH-HHTTCSSTTTTHHHHHHHSCC-CTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCH
T ss_pred CCcccchHHHHH-HHcCCHHHHHHHHHHHhhccc-ccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccch
Confidence 445556665554 568899988888888877664 22 3344556666654 3577777777666543211
Q ss_pred -------CC-CchhhHHHHHHHHHhcCChHHHHHHhccCCC
Q 006388 73 -------FG-SYVFVGSPLVDMYAKLGLIYDAKRGFDELPE 105 (647)
Q Consensus 73 -------~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 105 (647)
.. .|.. ..+.+...+..|+.+-+..+++.-..
T Consensus 87 ~~~i~~~~~~~d~~-g~tpL~~A~~~g~~~~v~~Ll~~ga~ 126 (273)
T 2pnn_A 87 KQFVNASYTDSYYK-GQTALHIAIERRNMTLVTLLVENGAD 126 (273)
T ss_dssp HHHHTCCCCSTTTT-TCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred hHHhhcccccccCC-CCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 10 1111 22233344566777766666665443
No 297
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=39.88 E-value=2.6e+02 Score=26.86 Aligned_cols=70 Identities=11% Similarity=0.093 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCCCCc--hHHHHHHHHHHhcC--ChHHHHHHhhcCCCCCeehHHHHHHHHH
Q 006388 80 GSPLVDMYAKLGLIYDAKRGFDELPEKNI--VMYNTMITGLLRRG--LVEESRRLFRGMKDKDSISWTTMITGLM 150 (647)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~li~~~~ 150 (647)
...+|.=|...|+.++|...++++..|.. ..-..+|......+ .-+.+-.++..+. .++.+-..+..++.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~-~~~ls~~~i~~gf~ 130 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC-GTVMSTNDVEKSFD 130 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTT-TTSCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-hCCCCHHHHHHHHH
Confidence 45677778888899999999988876542 12222232222222 3345666666666 36666666666554
No 298
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=39.85 E-value=1.1e+02 Score=30.14 Aligned_cols=21 Identities=10% Similarity=-0.015 Sum_probs=12.4
Q ss_pred HHHHHhcCChHHHHHHhhcCC
Q 006388 115 ITGLLRRGLVEESRRLFRGMK 135 (647)
Q Consensus 115 i~~~~~~g~~~~A~~~~~~~~ 135 (647)
+...+..|+++-...+++.-.
T Consensus 18 L~~Aa~~g~~~~v~~Ll~~g~ 38 (437)
T 1n11_A 18 LHVASFMGHLPIVKNLLQRGA 38 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHcCC
Confidence 444456677776666666533
No 299
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=38.94 E-value=1.7e+02 Score=25.39 Aligned_cols=62 Identities=6% Similarity=0.100 Sum_probs=40.1
Q ss_pred HHHHHHH---hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-----hHHHHHHHHHHHHhCCC
Q 006388 245 AMLVGYG---QNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLAS-----LEEGTQFHGRSLVTGLI 307 (647)
Q Consensus 245 ~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-----~~~a~~~~~~~~~~~~~ 307 (647)
-+|+++. +..+.+.|+-.+.+|.+.| .|....-..++.+.-..|. +..+...++.....|.+
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3455554 4688999999999999999 7776666666666655443 23334444444455543
No 300
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=38.66 E-value=7.9 Score=23.32 Aligned_cols=17 Identities=29% Similarity=0.714 Sum_probs=12.0
Q ss_pred CCccccc-cCcccCCCCC
Q 006388 630 AVRFHLF-KNGECSCGDF 646 (647)
Q Consensus 630 ~~~~h~~-~~g~csc~~~ 646 (647)
|-.-|.. ++|.|||+-|
T Consensus 12 CPkPHRL~~~~~C~CG~y 29 (42)
T 2l0z_A 12 CPLPHRLNSLGGCRCGKY 29 (42)
T ss_dssp CCTTSCCCTTSSBTTTTB
T ss_pred CCCCceecCCceeccccc
Confidence 4444544 7999999976
No 301
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=38.64 E-value=1.7e+02 Score=24.41 Aligned_cols=49 Identities=6% Similarity=0.021 Sum_probs=40.1
Q ss_pred HHHHHHHHhc--cCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhCCCcc
Q 006388 463 GKWAAESLLE--LDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREKGVRK 511 (647)
Q Consensus 463 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 511 (647)
...+|+.+.. ++-.-+..|...+..+...|++.+|.++++.-.+++-+|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 6667777765 445567889999999999999999999999988877665
No 302
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=37.79 E-value=1.4e+02 Score=25.70 Aligned_cols=57 Identities=16% Similarity=0.054 Sum_probs=30.2
Q ss_pred HHHHHHHHHhCCCCCC--hhh-----HHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHH
Q 006388 428 LEEAKSFINKMPFPPD--AIG-----WATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLL 484 (647)
Q Consensus 428 ~~~A~~~~~~~~~~p~--~~~-----~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 484 (647)
++.|+.+++.+.-.-+ ... --..+..|.+.|.+++|.+++++..+..|.+...-..|
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL 157 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKL 157 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHH
Confidence 4567777777742222 111 12334457888888888888888777766554433333
No 303
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=37.45 E-value=2.7e+02 Score=31.08 Aligned_cols=51 Identities=4% Similarity=-0.177 Sum_probs=34.2
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006388 382 VLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLEEAKSFINKM 438 (647)
Q Consensus 382 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 438 (647)
++..|...|..+-+.++.. -++.++..--.+..+|...|++++|.+.|+++
T Consensus 816 l~~~L~~~~~~~~a~eL~~------~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIG------WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGG------GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhcHHHHHHHHHh------hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5667777777776665432 22333333335677788899999999999887
No 304
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=36.80 E-value=1.3e+02 Score=25.36 Aligned_cols=57 Identities=14% Similarity=0.108 Sum_probs=24.1
Q ss_pred HHHhcCCHHHHHHHHhcC-CC---CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 006388 218 MYCKCKSIKYAESVFRTM-AW---KNVVSWTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPD 274 (647)
Q Consensus 218 ~y~~~g~~~~A~~~~~~~-~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 274 (647)
..++.|+.+-+..+++.- .. +|..-++.+..+.........-.++.+.+.+.|..|+
T Consensus 112 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 112 PAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC
Confidence 344455665555555543 11 2222233333332222222223445555555565544
No 305
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=36.74 E-value=3e+02 Score=28.11 Aligned_cols=68 Identities=10% Similarity=-0.053 Sum_probs=40.8
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHH----HH-HHhccCCCCchhHHHHHHhhhhCCChhHHHHHHHHHHhCC
Q 006388 441 PPDAIGWATLLSSCRIHGNVEIGKWA----AE-SLLELDPYNPASYVLLSSIYASKGKWDHVSQLRRTMREKG 508 (647)
Q Consensus 441 ~p~~~~~~~ll~~~~~~~~~~~a~~~----~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 508 (647)
.+|......|-.-+..+|..++-.++ ++ .+.+..|++......|-.-|.+.|++-+|.+++..+...+
T Consensus 175 s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~ 247 (525)
T 3i5p_A 175 YNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATSN 247 (525)
T ss_dssp SCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSSS
T ss_pred CChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhCC
Confidence 34555555666666666654432221 11 1222335455556677777889999999999999998764
No 306
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.68 E-value=3.3e+02 Score=27.08 Aligned_cols=194 Identities=9% Similarity=-0.005 Sum_probs=112.9
Q ss_pred CCHHHHHHHHhcCCC-----C----ChhHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHH----hcc
Q 006388 223 KSIKYAESVFRTMAW-----K----NVVSWTAMLVGYGQNGCSEEAVKIFCNMQRN-GIEPDDFTLGSVISSC----ANL 288 (647)
Q Consensus 223 g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~----~~~ 288 (647)
|+++.|.+.+-.+.. . .......++..|...|+++...+.+.-+... |..+.. ...++..+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence 678888777654431 1 2345778889999999999998877766543 333222 23333332 223
Q ss_pred CChHHHHHHHHHHHHh------C-CCc---chhHHHHHHHHHHhcCCHHHHHHHHhhcC----CC-C----hhhHHHHHH
Q 006388 289 ASLEEGTQFHGRSLVT------G-LIS---FITVSNALVTFYGKCGNIEDSHRLFNEMN----VR-D----EVSWTALVS 349 (647)
Q Consensus 289 ~~~~~a~~~~~~~~~~------~-~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~-d----~~~~~~li~ 349 (647)
...+.-.. ...... | +-. ...+...|...|...|++.+|.+++..+. .. + +..|...+.
T Consensus 108 ~~~d~~~~--~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 108 KSLDLNTR--ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp CTTHHHHH--HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred CchhHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33322111 111111 1 111 23445678999999999999999999875 11 1 346777788
Q ss_pred HHHHcCChHHHHHHHHHHHH----CCCCCCHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHH
Q 006388 350 GYAKFGKANETIDLFEKMLS----HGLKPDEV--TLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILS 423 (647)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~----~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 423 (647)
.|...+++.+|..++++... ....|+.. .+...+..+.+.+++.+|.+ .|..+.+.+.
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~----------------~y~e~~~~~~ 249 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQ----------------YLQEIYQTDA 249 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHH----------------HHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHH----------------HHHHHHhccc
Confidence 89999999999999998742 22222211 23333334444445444422 3555566666
Q ss_pred HcCCHHHHHHHHH
Q 006388 424 RAGRLEEAKSFIN 436 (647)
Q Consensus 424 ~~g~~~~A~~~~~ 436 (647)
..++.......+.
T Consensus 250 ~~~d~~~~~~~L~ 262 (445)
T 4b4t_P 250 IKSDEAKWKPVLS 262 (445)
T ss_dssp HHSCHHHHHHHHH
T ss_pred ccCCHHHHHHHHH
Confidence 6676655444443
No 307
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=36.49 E-value=2.1e+02 Score=24.81 Aligned_cols=53 Identities=15% Similarity=0.211 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCc
Q 006388 357 ANETIDLFEKMLSHGLKPDEV-TLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRP 410 (647)
Q Consensus 357 ~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 410 (647)
..++.++|..|...|+--... -|......+...|++.+|.++|+.-++. +-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 445666666666555443332 4444444555556666666666555443 3344
No 308
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=36.13 E-value=2.5e+02 Score=25.43 Aligned_cols=245 Identities=11% Similarity=-0.049 Sum_probs=0.0
Q ss_pred HHhccCCCCCchHHHHHHHHHHhcCChHHHHHHhhcCCCCCeehHHHHHHHHHhCCChhHHHHHHHHHH--HCCCCCChh
Q 006388 98 RGFDELPEKNIVMYNTMITGLLRRGLVEESRRLFRGMKDKDSISWTTMITGLMQNGLEREAIDLFREMR--LEGLAMDQF 175 (647)
Q Consensus 98 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~g~~pd~~ 175 (647)
.+++.+..+|...-..-+.++.+.|..+....+.+.+..++...-...+.++.+.|....+..-+-... ..--.++..
T Consensus 27 ~L~~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~ 106 (280)
T 1oyz_A 27 ELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSAC 106 (280)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHH
Q ss_pred hHHHHHHHHhcCC--ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhc
Q 006388 176 TFGSVLTACGGLL--ALEEGKQIHAFIIRNDHKDNVFVGSALVDMYCKCKSIKYAESVFRTMAWKNVVSWTAMLVGYGQN 253 (647)
Q Consensus 176 t~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 253 (647)
.-...+.+++..+ +......+...+.+.--.++..+-...+.+..+.|+.+....+.+.+..++...-...+.++...
T Consensus 107 vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 186 (280)
T 1oyz_A 107 VRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININ 186 (280)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhh
Q ss_pred C-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHH
Q 006388 254 G-CSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLASLEEGTQFHGRSLVTGLISFITVSNALVTFYGKCGNIEDSHRL 332 (647)
Q Consensus 254 g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 332 (647)
| ....+...+..+.. .++...-...+.++...++.+....+...+.... +....+.++.+.|..+..-.+
T Consensus 187 ~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d~~------vr~~a~~aL~~i~~~~~~~~L 257 (280)
T 1oyz_A 187 KYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNT------VYDDIIEAAGELGDKTLLPVL 257 (280)
T ss_dssp TCCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTSSS------CCHHHHHHHHHHCCGGGHHHH
T ss_pred ccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCHhhHHHHHHHhcCcc------HHHHHHHHHHhcCchhhhHHH
Q ss_pred HhhcC-CCChhhHHHHHHHH
Q 006388 333 FNEMN-VRDEVSWTALVSGY 351 (647)
Q Consensus 333 ~~~~~-~~d~~~~~~li~~~ 351 (647)
.+.+. .++...-...+..+
T Consensus 258 ~~~l~~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 258 DTMLYKFDDNEIITSAIDKL 277 (280)
T ss_dssp HHHHTTSSCCHHHHHHHHHH
T ss_pred HHHHhcCCCcHHHHHHHHHh
No 309
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=35.59 E-value=1.3e+02 Score=28.63 Aligned_cols=18 Identities=6% Similarity=-0.042 Sum_probs=9.6
Q ss_pred HHHHhcCCHHHHHHHHhc
Q 006388 217 DMYCKCKSIKYAESVFRT 234 (647)
Q Consensus 217 ~~y~~~g~~~~A~~~~~~ 234 (647)
...+..|+.+-+..+++.
T Consensus 178 ~~A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 178 MRAMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhc
Confidence 334455666655555554
No 310
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=35.16 E-value=1e+02 Score=27.60 Aligned_cols=30 Identities=13% Similarity=0.037 Sum_probs=21.2
Q ss_pred CcChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 006388 409 RPIHDHYTCMIDILSRAGRLEEAKSFINKM 438 (647)
Q Consensus 409 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 438 (647)
.++.......+..+.+.|+-++|.++|-+.
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 445555666677888888888888887543
No 311
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=35.12 E-value=65 Score=26.60 Aligned_cols=58 Identities=9% Similarity=-0.003 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhCCCC-chhhHHHHHHHHHhcCChHHHHHHhccCCCCCchHHHHHHHHH
Q 006388 61 GRQIHGHILKFGFGS-YVFVGSPLVDMYAKLGLIYDAKRGFDELPEKNIVMYNTMITGL 118 (647)
Q Consensus 61 a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 118 (647)
...+|..|...|+.. -...|......+-..|++.+|.++|+.-.+.+......|...+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~ 142 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQQY 142 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 778888888887743 3456777788888888888888888776655555444444443
No 312
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=34.09 E-value=1.5e+02 Score=26.00 Aligned_cols=199 Identities=12% Similarity=-0.001 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCch--hhHHHHHHHHHhcCChHHHHHHhccCCCCCchHH--HHHHHHHHhcCChHHHHHHhhcCCCC
Q 006388 62 RQIHGHILKFGFGSYV--FVGSPLVDMYAKLGLIYDAKRGFDELPEKNIVMY--NTMITGLLRRGLVEESRRLFRGMKDK 137 (647)
Q Consensus 62 ~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~ 137 (647)
.++.+.+++.|..++. ....+.+...++.|+.+-+..+++.-..++.... .+.+...+..|+.+-+..+++.-...
T Consensus 24 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~ 103 (237)
T 3b7b_A 24 VDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD 103 (237)
T ss_dssp HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q ss_pred ----CeehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHH--HHHHHHhcCCChHHHHHHHHHHHHcCCCCchhH
Q 006388 138 ----DSISWTTMITGLMQNGLEREAIDLFREMRLEGLAMDQFTFG--SVLTACGGLLALEEGKQIHAFIIRNDHKDNVFV 211 (647)
Q Consensus 138 ----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 211 (647)
+...++.|..+..... .++++.+.+.|..++..... +.+...+..|+.+ +.+.+++.|..++..-
T Consensus 104 ~~~~~~~g~t~L~~A~~~~~-----~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~ 174 (237)
T 3b7b_A 104 VNCQDDGGWTPMIWATEYKH-----VDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVD----IAEILLAAKCDLHAVN 174 (237)
T ss_dssp TTCCCTTSCCHHHHHHHTTC-----HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHH----HHHHHHTTTCCTTCCC
T ss_pred cccCCCCCCCHHHHHHHcCC-----HHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHH----HHHHHHHcCCCCCCcC
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHhcCCCCChh--HHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006388 212 --GSALVDMYCKCKSIKYAESVFRTMAWKNVV--SWTAMLVGYGQNGCSEEAVKIFCNMQRN 269 (647)
Q Consensus 212 --~~~li~~y~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~ 269 (647)
..+.+...++.|+.+-+.-+++.-...+.. .-.+-+......|+...++++.+.+.++
T Consensus 175 ~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~ds 236 (237)
T 3b7b_A 175 IHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQDS 236 (237)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcc
No 313
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.02 E-value=1e+02 Score=31.37 Aligned_cols=60 Identities=12% Similarity=0.133 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC--CcCh--HH-HHHHHHHHHHcCCHHHHHHHHHhC
Q 006388 377 VTLIGVLSACSRAGLVEKGRHYFEIMVKEYGI--RPIH--DH-YTCMIDILSRAGRLEEAKSFINKM 438 (647)
Q Consensus 377 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~~--~~-~~~li~~~~~~g~~~~A~~~~~~~ 438 (647)
..++.+++.|.+.+.++.|..+..... +.. .++. .. +-.+...+.-.+++.+|.+.+..+
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 366777788888888888888877652 111 1111 11 223456667788888888887765
No 314
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=33.44 E-value=71 Score=26.40 Aligned_cols=63 Identities=13% Similarity=0.184 Sum_probs=40.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCC---hhHHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCH
Q 006388 213 SALVDMYCKCKSIKYAESVFRTMAWKN---VVSWTAMLVGYGQNGC--SEEAVKIFCNMQRNGIEPDD 275 (647)
Q Consensus 213 ~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 275 (647)
+.++.-|...|+.++|.+.++++..|. .+...++..++-+.++ .+.+..++..+...|+-+..
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 557777888888888888888887652 2334444445554322 34566777777777654433
No 315
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=32.84 E-value=1.4e+02 Score=25.32 Aligned_cols=79 Identities=6% Similarity=-0.041 Sum_probs=33.1
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhh--HHHHHHHHHhcCChH
Q 006388 17 ASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVFV--GSPLVDMYAKLGLIY 94 (647)
Q Consensus 17 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~ 94 (647)
+..|+.+....++..-.. .+...|..-++.|..++ ..|+.+ +.+.+++.|..++... ..+.+...+..|+.+
T Consensus 13 ~~~g~~~~v~~ll~~~~~-~~~~~~~~g~t~L~~A~-~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 86 (201)
T 3hra_A 13 ANQRDTKKVKEILQDTTY-QVDEVDTEGNTPLNIAV-HNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGRTE 86 (201)
T ss_dssp HHTTCHHHHHHHHTCTTC-CTTCCCTTSCCHHHHHH-HHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHhccHHHHHHHHHcCCC-CCCCCCCCCCCHHHHHH-HcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 456666666555542210 01012222233333333 334433 3444455555443221 112333444556666
Q ss_pred HHHHHhc
Q 006388 95 DAKRGFD 101 (647)
Q Consensus 95 ~A~~~~~ 101 (647)
-+..+++
T Consensus 87 ~~~~Ll~ 93 (201)
T 3hra_A 87 ILAYMLK 93 (201)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6665553
No 316
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=32.63 E-value=1.3e+02 Score=25.27 Aligned_cols=57 Identities=11% Similarity=0.029 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhCCCC-chhhHHHHHHHHHhcCChHHHHHHhccCCCCCchHHHHHHHH
Q 006388 61 GRQIHGHILKFGFGS-YVFVGSPLVDMYAKLGLIYDAKRGFDELPEKNIVMYNTMITG 117 (647)
Q Consensus 61 a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 117 (647)
...+|..|...|+.. -...|......+-..|++.+|.++|+.-.+.+......|-..
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~~ 136 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQ 136 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 566777777777643 345567777777777888888777776654444333333333
No 317
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=32.32 E-value=83 Score=25.64 Aligned_cols=46 Identities=13% Similarity=0.063 Sum_probs=22.4
Q ss_pred eehHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 006388 139 SISWTTMITGLMQNGLEREAIDLFREMRLEGLAMDQFTFGSVLTAC 184 (647)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~ 184 (647)
...-..++..+...+..-.|.++++.+.+.+...+..|....|+.+
T Consensus 21 T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L 66 (145)
T 2fe3_A 21 TPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVF 66 (145)
T ss_dssp CHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 3334444555554444555555555555554444444444444333
No 318
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=32.06 E-value=1.6e+02 Score=25.64 Aligned_cols=16 Identities=6% Similarity=0.160 Sum_probs=8.9
Q ss_pred HHhcCChHHHHHHhcc
Q 006388 87 YAKLGLIYDAKRGFDE 102 (647)
Q Consensus 87 ~~~~g~~~~A~~~~~~ 102 (647)
.++.|+++....+++.
T Consensus 16 A~~~g~~~~~~~Ll~~ 31 (240)
T 3eu9_A 16 ATQYGIYERCRELVEA 31 (240)
T ss_dssp HHHTTCHHHHHHHHHT
T ss_pred HHHcCChHHHHHHHHc
Confidence 3455666665555554
No 319
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=30.50 E-value=2e+02 Score=24.81 Aligned_cols=45 Identities=7% Similarity=0.164 Sum_probs=33.3
Q ss_pred HHHHHHH---hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 006388 245 AMLVGYG---QNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLA 289 (647)
Q Consensus 245 ~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 289 (647)
-+|+++. +..+.+.|+-.+.+|.+.|-.|....-..++.+.-..|
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3555554 45889999999999999998887776666666654444
No 320
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=30.36 E-value=10 Score=19.68 Aligned_cols=13 Identities=54% Similarity=1.370 Sum_probs=9.3
Q ss_pred cccCccc--CCCCCC
Q 006388 635 LFKNGEC--SCGDFW 647 (647)
Q Consensus 635 ~~~~g~c--sc~~~~ 647 (647)
.|.+|.| .|++-|
T Consensus 8 ~fgngfcgdncgnsw 22 (27)
T 2hgo_A 8 NFGNGFCGDNCGNSW 22 (27)
T ss_dssp EETTTEEECSSSCEE
T ss_pred eecCccccCCcCCcc
Confidence 5788888 576665
No 321
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=30.34 E-value=72 Score=28.72 Aligned_cols=53 Identities=6% Similarity=-0.123 Sum_probs=28.6
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCChh-------hHHHHHHHHh--cCCChHHHHHHHHHH
Q 006388 148 GLMQNGLEREAIDLFREMRLEGLAMDQF-------TFGSVLTACG--GLLALEEGKQIHAFI 200 (647)
Q Consensus 148 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~-------t~~~ll~~~~--~~~~~~~a~~~~~~~ 200 (647)
..++.|+.+....+++.+.+.|..++.. -.+.+..|+. +.|+.+.++.+++.-
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 3445577777666666666666555432 2233443432 456666665555543
No 322
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=30.33 E-value=84 Score=30.16 Aligned_cols=14 Identities=29% Similarity=0.354 Sum_probs=6.8
Q ss_pred HcCCHHHHHHHHHh
Q 006388 424 RAGRLEEAKSFINK 437 (647)
Q Consensus 424 ~~g~~~~A~~~~~~ 437 (647)
+.|+.+-+.-+++.
T Consensus 253 ~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 253 RAAMVLLTKELLQK 266 (364)
T ss_dssp HTCCHHHHHHHHHH
T ss_pred HhChHHHHHHHHHc
Confidence 44555554444444
No 323
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.00 E-value=2.4e+02 Score=28.76 Aligned_cols=66 Identities=15% Similarity=0.182 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCh------hhHH-HHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 006388 412 HDHYTCMIDILSRAGRLEEAKSFINKMPFPPDA------IGWA-TLLSSCRIHGNVEIGKWAAESLLELDPYN 477 (647)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~------~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 477 (647)
...+|.++..|...+.++.|..++.+..++... ..|. -++..+...+++.+|.+.+..++..-|.+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 456777777777777777777777776432221 1111 22334455667777777777776666654
No 324
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=29.99 E-value=1e+02 Score=28.41 Aligned_cols=91 Identities=7% Similarity=0.036 Sum_probs=46.9
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhhhCCChhHHH
Q 006388 419 IDILSRAGRLEEAKSFINKMPFPPDAIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYASKGKWDHVS 498 (647)
Q Consensus 419 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 498 (647)
+...+..|+.+-+..+++.-+...+...-.+.+......|+.+....+++.-...+..+..-....+......|+.
T Consensus 133 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~---- 208 (285)
T 3kea_A 133 FYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI---- 208 (285)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCH----
T ss_pred HHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCH----
Confidence 3344567777766666665533233312334444555778888777777765544433322211111222334553
Q ss_pred HHHHHHHhCCCccCC
Q 006388 499 QLRRTMREKGVRKDP 513 (647)
Q Consensus 499 ~~~~~m~~~g~~~~~ 513 (647)
++.+.+.+.|..+..
T Consensus 209 ~~v~~Ll~~gad~~~ 223 (285)
T 3kea_A 209 EMLQALFKYDINIYS 223 (285)
T ss_dssp HHHHHHTTSCBCSTT
T ss_pred HHHHHHHHcCCCCCC
Confidence 455666677776543
No 325
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=29.80 E-value=1.6e+02 Score=26.34 Aligned_cols=23 Identities=9% Similarity=-0.028 Sum_probs=16.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHH
Q 006388 145 MITGLMQNGLEREAIDLFREMRL 167 (647)
Q Consensus 145 li~~~~~~g~~~~A~~~~~~m~~ 167 (647)
-++.+....++++|++++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 45667777888888888777654
No 326
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=29.31 E-value=1.4e+02 Score=28.04 Aligned_cols=69 Identities=10% Similarity=0.075 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC--hHHHHHHHHHHHHhCCCcchhH
Q 006388 243 WTAMLVGYGQNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLAS--LEEGTQFHGRSLVTGLISFITV 312 (647)
Q Consensus 243 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~--~~~a~~~~~~~~~~~~~~~~~~ 312 (647)
.+.++.-|...|+.++|.+.++++...... .......+..+.-+.++ .+....++..+.+.|+-+....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 456777888888888888888877521111 11233334444444322 3445566666666665544333
No 327
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=26.78 E-value=2.7e+02 Score=24.26 Aligned_cols=63 Identities=13% Similarity=0.184 Sum_probs=41.9
Q ss_pred HHHHHHHH---hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-----hHHHHHHHHHHHHhCC
Q 006388 244 TAMLVGYG---QNGCSEEAVKIFCNMQRNGIEPDDFTLGSVISSCANLAS-----LEEGTQFHGRSLVTGL 306 (647)
Q Consensus 244 ~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-----~~~a~~~~~~~~~~~~ 306 (647)
--+|+++. +..+++.|+-.+.+|.+.|-.|....-..++.+.-..|. +..|...++.....|.
T Consensus 36 Yd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 36 FDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 34555554 458899999999999999988877777777766654442 3344444444455554
No 328
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=26.43 E-value=25 Score=21.36 Aligned_cols=13 Identities=31% Similarity=0.782 Sum_probs=10.4
Q ss_pred ccccCCCccchhh
Q 006388 603 NLRVCSDCHNATK 615 (647)
Q Consensus 603 ~~~~~~~~~~~~~ 615 (647)
+-|+|.+||.-+.
T Consensus 16 ~YRvC~~CgkPi~ 28 (44)
T 2lo3_A 16 QYRVCEKCGKPLA 28 (44)
T ss_dssp CEEECTTTCCEEE
T ss_pred cchhhcccCCcch
Confidence 7899999986543
No 329
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=26.43 E-value=2.8e+02 Score=23.87 Aligned_cols=87 Identities=13% Similarity=0.021 Sum_probs=39.1
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCCCcchHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchh--hHHHHHHHHH
Q 006388 11 LLISGHASHGSVNDAVKVYNLMLKDGLGNLSRITFSTMLIMSSSRRCVDLGRQIHGHILKFGFGSYVF--VGSPLVDMYA 88 (647)
Q Consensus 11 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~ 88 (647)
+.+...++.|+.+....+++.-...-. .+|..-.+.|..+ +..|+.+ +.+.+++.|..++.. ...+.+...+
T Consensus 8 ~~l~~A~~~g~~~~v~~ll~~~~~~~~-~~~~~g~t~L~~A-~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 81 (231)
T 3aji_A 8 IMICNLAYSGKLDELKERILADKSLAT-RTDQDSRTALHWA-CSAGHTE----IVEFLLQLGVPVNDKDDAGWSPLHIAA 81 (231)
T ss_dssp SHHHHHHHHTCHHHHHHHHHHCGGGGG-CCCTTSCCHHHHH-HHHTCHH----HHHHHHHTTCCSCCCCTTSCCHHHHHH
T ss_pred chHHHHHHhCCHHHHHHHHHhchhhhh-cCCCCCCCHHHHH-HHcCcHH----HHHHHHHhCCCCCCcCCCCCCHHHHHH
Confidence 345555667777777666655322111 2233323333333 2334443 334444555443321 1122333444
Q ss_pred hcCChHHHHHHhccC
Q 006388 89 KLGLIYDAKRGFDEL 103 (647)
Q Consensus 89 ~~g~~~~A~~~~~~~ 103 (647)
..|+.+-+..+++.-
T Consensus 82 ~~~~~~~v~~Ll~~g 96 (231)
T 3aji_A 82 SAGXDEIVKALLVKG 96 (231)
T ss_dssp HHTCHHHHHHHHHTT
T ss_pred HcCHHHHHHHHHHcC
Confidence 556666555555543
No 330
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=26.18 E-value=1.5e+02 Score=23.97 Aligned_cols=63 Identities=6% Similarity=0.042 Sum_probs=38.2
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHH
Q 006388 365 EKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLE 429 (647)
Q Consensus 365 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 429 (647)
+.+.+.|++++..-. .++..+...+..-.|.++++.+.+. +...+..|.---++.+...|-+.
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCCEE
Confidence 346667777776533 2334444445556677888887654 44445555555567888888754
No 331
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=26.03 E-value=2.6e+02 Score=24.51 Aligned_cols=47 Identities=15% Similarity=0.268 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhcCCCcCh-HHH-----HHHHHHHHHcCCHHHHHHHHHhC
Q 006388 392 VEKGRHYFEIMVKEYGIRPIH-DHY-----TCMIDILSRAGRLEEAKSFINKM 438 (647)
Q Consensus 392 ~~~a~~~~~~~~~~~~~~p~~-~~~-----~~li~~~~~~g~~~~A~~~~~~~ 438 (647)
++.|+.+|+.+.+...+..+. +.. -..+-.|.+.|.+++|.+++++.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~ 140 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKH 140 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 456677777776654332221 111 12344567788888888888776
No 332
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=25.48 E-value=1.2e+02 Score=24.90 Aligned_cols=33 Identities=9% Similarity=0.160 Sum_probs=13.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCChhh
Q 006388 144 TMITGLMQNGLEREAIDLFREMRLEGLAMDQFT 176 (647)
Q Consensus 144 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t 176 (647)
.++..+...+.+-.|.++++.+.+.+...+..|
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aT 63 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISS 63 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhh
Confidence 334444444344444444444444433333333
No 333
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=24.99 E-value=22 Score=28.58 Aligned_cols=40 Identities=18% Similarity=0.251 Sum_probs=26.6
Q ss_pred CCcEEEEe----ccccCCCccchhhhhhhhccceEEEecCCccccccCcccC
Q 006388 595 GLPIRVVK----NLRVCSDCHNATKYISKITQREILVRDAVRFHLFKNGECS 642 (647)
Q Consensus 595 ~~~~~~~~----~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~cs 642 (647)
...+||+. +.++|.+| .+...-..-.+.-.||+|+++.|-
T Consensus 44 ~~~~Riv~~~~~~~~vi~n~--------~i~~~~~y~~~~~~Fh~w~~~~~~ 87 (130)
T 1qc6_A 44 SSTFRVVGVKLQDQQVVINY--------SIVKGLKYNQATPTFHQWRDARQV 87 (130)
T ss_dssp TTEEEEEEECTTTCCEEEEE--------ECCTTCEEEEEETTEEEEECSSCE
T ss_pred CcEEEEEEEeCCCCeEEEee--------EEeCCcEEeccCCeeEEEEcCCEE
Confidence 45677773 46776665 333333444688999999999874
No 334
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=24.74 E-value=1.4e+02 Score=30.34 Aligned_cols=75 Identities=13% Similarity=0.099 Sum_probs=41.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHhhh
Q 006388 415 YTCMIDILSRAGRLEEAKSFINKM-PFPPD-AIGWATLLSSCRIHGNVEIGKWAAESLLELDPYNPASYVLLSSIYA 489 (647)
Q Consensus 415 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 489 (647)
.-+|.|..--.+.++.|..+|.++ .+.|+ ...||.|.-.....|+.-+|.-.|-+.+....+-+.+..+|...+.
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 344555555555666666666655 23343 4566666666665666666666555555544445555555555443
No 335
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=24.69 E-value=3.4e+02 Score=23.47 Aligned_cols=65 Identities=5% Similarity=-0.036 Sum_probs=40.6
Q ss_pred ehHHHHHHHHHh---CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCC-----hHHHHHHHHHHHHcCC
Q 006388 140 ISWTTMITGLMQ---NGLEREAIDLFREMRLEGLAMDQFTFGSVLTACGGLLA-----LEEGKQIHAFIIRNDH 205 (647)
Q Consensus 140 ~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~g~ 205 (647)
...-.+|+++.+ -.+++.|+-.+.+|.+.| .|....-..++-+.-..|. +..+...++.....|.
T Consensus 12 d~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 12 DAHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 344456677654 578999999999999999 6665555555555554442 2233344444444553
No 336
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=24.58 E-value=1.1e+02 Score=27.00 Aligned_cols=58 Identities=9% Similarity=0.115 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhCCCC-chhhHHHHHHHHHhcCChHHHHHHhccCCCCCchHHHHHHH
Q 006388 59 DLGRQIHGHILKFGFGS-YVFVGSPLVDMYAKLGLIYDAKRGFDELPEKNIVMYNTMIT 116 (647)
Q Consensus 59 ~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 116 (647)
+....+|..|...|+.. -...|......+-..|++.+|..+|+.-.+........|..
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~ 189 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQ 189 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHH
Confidence 35667888888887743 34567777888888888888888887665544433443333
No 337
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=24.32 E-value=97 Score=25.86 Aligned_cols=58 Identities=10% Similarity=-0.028 Sum_probs=29.1
Q ss_pred HHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHc--CCCCchhHHHHHHHHHHhcCC
Q 006388 166 RLEGLAMDQFTFGSVLTACGGLLALEEGKQIHAFIIRN--DHKDNVFVGSALVDMYCKCKS 224 (647)
Q Consensus 166 ~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~y~~~g~ 224 (647)
.+.|++++.. -..++..+...+..-.|.++++.+.+. +...+..|.---++.+...|-
T Consensus 25 ~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 25 RQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 3455554332 334445555555555566666666655 444444433334455555553
No 338
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=23.76 E-value=4.7e+02 Score=24.75 Aligned_cols=91 Identities=9% Similarity=0.118 Sum_probs=48.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCCh---hHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHH---HHHHHHHH
Q 006388 213 SALVDMYCKCKSIKYAESVFRTMAWKNV---VSWTAMLVGYGQNG-CSEEAVKIFCNMQRNGIEPDDFT---LGSVISSC 285 (647)
Q Consensus 213 ~~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~a~ 285 (647)
..++.-|...|+.++|...++++..|.- .....+..++-+.. .-+.+..++..+.+.|+-+.... |..++..+
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~l 94 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILELA 94 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhC
Confidence 4577788888899999999998876531 22222332332221 23445667777776665433322 33333333
Q ss_pred hccC-ChHHHHHHHHHHHH
Q 006388 286 ANLA-SLEEGTQFHGRSLV 303 (647)
Q Consensus 286 ~~~~-~~~~a~~~~~~~~~ 303 (647)
.... +...|...+..+..
T Consensus 95 ~Dl~lDiP~a~~~La~~v~ 113 (339)
T 1ug3_A 95 EDMEIDIPHVWLYLAELVT 113 (339)
T ss_dssp HHHTTTCTTHHHHHHHHHG
T ss_pred hHhhcCccchHHHHHHHHH
Confidence 2222 44455555555543
No 339
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=23.12 E-value=3.1e+02 Score=23.64 Aligned_cols=53 Identities=11% Similarity=-0.073 Sum_probs=26.5
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCC---------chhHHHHHHHHHHhcCCHHHHHHHHhc
Q 006388 181 LTACGGLLALEEGKQIHAFIIRNDHKD---------NVFVGSALVDMYCKCKSIKYAESVFRT 234 (647)
Q Consensus 181 l~~~~~~~~~~~a~~~~~~~~~~g~~~---------~~~~~~~li~~y~~~g~~~~A~~~~~~ 234 (647)
+...+..|+.+.+.++++.+++.|..+ |..- .+-+..-++.|+.+-+..+++.
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g-~tpl~~A~~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQG-LTPFKLAGVEGNIVMFQHLMQK 219 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTS-CCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCC-CCHHHHHHHcCCHHHHHHHHhc
Confidence 333445566666666666666665432 1111 2233444555666665555543
No 340
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=22.79 E-value=94 Score=23.26 Aligned_cols=38 Identities=8% Similarity=0.022 Sum_probs=30.3
Q ss_pred CCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChhHHH
Q 006388 223 KSIKYAESVFRTMAWKNVVSWTAMLVGYGQNGCSEEAV 260 (647)
Q Consensus 223 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 260 (647)
...+.|.++++.++.+...+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788888999888888888888888887767665554
No 341
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=22.05 E-value=2.3e+02 Score=23.04 Aligned_cols=63 Identities=13% Similarity=0.123 Sum_probs=35.5
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHcCCHH
Q 006388 365 EKMLSHGLKPDEVTLIGVLSACSRAGLVEKGRHYFEIMVKEYGIRPIHDHYTCMIDILSRAGRLE 429 (647)
Q Consensus 365 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 429 (647)
+.+.+.|+++...-. .++..+...+..-.|.++++.+.+. +...+..|.---++.+...|-+.
T Consensus 16 ~~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 16 MSIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCcEE
Confidence 345567766655432 2344444445566777788877665 44445545445567788888754
No 342
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=21.96 E-value=93 Score=23.29 Aligned_cols=27 Identities=15% Similarity=0.064 Sum_probs=12.0
Q ss_pred ChHHHHHHhccCCCCCchHHHHHHHHH
Q 006388 92 LIYDAKRGFDELPEKNIVMYNTMITGL 118 (647)
Q Consensus 92 ~~~~A~~~~~~~~~~~~~~~~~li~~~ 118 (647)
..+.|+++++.++.+....|..++.++
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL 78 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCL 78 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 344455555555544333333333333
No 343
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=20.80 E-value=3.7e+02 Score=22.50 Aligned_cols=63 Identities=6% Similarity=0.056 Sum_probs=30.3
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCChhh---HHHHHHHHhc-CCChHHHHHHHHHHHHcCCCCc
Q 006388 146 ITGLMQNGLEREAIDLFREMRLEGLAMDQFT---FGSVLTACGG-LLALEEGKQIHAFIIRNDHKDN 208 (647)
Q Consensus 146 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t---~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~ 208 (647)
+...+..|+.+.-.++.+.+.+.|..++... .+.|..++.. ..+.....++.+.+++.|..++
T Consensus 42 Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 42 LYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC
Confidence 3444455666555666666777776655421 2222222221 2233333455555555554443
Done!