Query 006390
Match_columns 647
No_of_seqs 141 out of 1176
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 22:36:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006390.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006390hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2262 Sexual differentiation 100.0 5E-168 1E-172 1348.5 36.9 643 1-647 118-761 (761)
2 TIGR00727 ISP4_OPT small oligo 100.0 3E-154 6E-159 1303.0 47.8 607 1-617 71-680 (681)
3 TIGR00728 OPT_sfam oligopeptid 100.0 3E-110 6E-115 962.2 47.2 576 1-613 64-654 (654)
4 PF03169 OPT: OPT oligopeptide 100.0 1E-108 2E-113 947.1 39.8 560 15-610 53-623 (624)
5 TIGR00733 putative oligopeptid 100.0 2.5E-62 5.4E-67 550.8 39.7 501 24-609 51-588 (591)
6 COG1297 Predicted membrane pro 100.0 1.7E-49 3.6E-54 427.0 23.6 517 24-616 64-619 (624)
7 COG0628 yhhT Predicted permeas 87.1 4.5 9.8E-05 43.7 10.8 159 288-463 167-335 (355)
8 TIGR02872 spore_ytvI sporulati 77.6 24 0.00053 37.4 11.7 41 419-459 286-330 (341)
9 PF03169 OPT: OPT oligopeptide 75.3 42 0.00092 39.3 13.8 24 550-576 220-243 (624)
10 PF01594 UPF0118: Domain of un 71.8 53 0.0011 34.7 12.5 52 410-461 263-319 (327)
11 PRK12287 tqsA pheromone autoin 68.0 70 0.0015 34.5 12.5 49 411-459 266-319 (344)
12 TIGR00728 OPT_sfam oligopeptid 58.0 1.5E+02 0.0033 35.0 13.8 21 257-277 278-298 (654)
13 PRK10983 putative inner membra 57.7 97 0.0021 33.9 11.3 46 416-461 288-337 (368)
14 TIGR00733 putative oligopeptid 43.9 5.9E+02 0.013 29.8 16.3 108 354-462 2-117 (591)
15 PF09512 ThiW: Thiamine-precur 31.1 2.1E+02 0.0046 27.1 7.3 27 437-463 90-117 (150)
16 PF13829 DUF4191: Domain of un 28.4 2E+02 0.0044 29.2 7.2 44 322-370 24-67 (224)
17 PF03606 DcuC: C4-dicarboxylat 25.1 3.6E+02 0.0079 30.4 9.4 19 325-343 251-269 (465)
18 PF01864 DUF46: Putative integ 21.0 1.8E+02 0.0039 28.4 5.1 35 498-532 38-72 (175)
No 1
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=100.00 E-value=5.2e-168 Score=1348.54 Aligned_cols=643 Identities=62% Similarity=1.226 Sum_probs=626.4
Q ss_pred CccccCCceeccCcceeEeecCCCCCcchhHHHhHhhhccchhhhHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHH
Q 006390 1 MAKTLPKKVFFEGRRFEFTFNPGPFHVKEHVLITIFANAGAGNVYAIHIVSVLKLFYKKELTFLVALLVVITTQVLGFGW 80 (647)
Q Consensus 1 ~a~~lP~~~~~~~~~~~~~lnPgpf~~kE~~~i~~~asaa~~~~~a~~~i~~~~~~y~~~~~~~~~il~~ls~~~lG~~~ 80 (647)
|||+||+|++..+++|+|+|||||||.|||++++++||++++.+||+++|.+|++||++++++++++++++++|++|||+
T Consensus 118 ma~~lP~~~~~~~~~~~fslNPGPFn~KEHvlitIfan~~sg~aYat~Ii~~~k~fY~~~l~f~~~~ll~lttQ~lGyGw 197 (761)
T KOG2262|consen 118 MAKTLPTWKFGLGGRWSFSLNPGPFNVKEHVLITIFANIGSGTAYATHIITAQKAFYKRNLSFGYAFLLVLTTQLLGYGW 197 (761)
T ss_pred HHHhCCceeeecCcceEEEeCCCCCcchheeeeehhhhccCcchhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhcccH
Confidence 68999999994378899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccceecCCCCCCCchhHHHHHHHHhhhcccccCCcccchhHHHHHHHHHHHHHhcccchhhhccccchhhhcccCc
Q 006390 81 AGLFRRYLVDPPTMWWPQNLVQVSLFRALHEKEKRSAGGLTRNQFFLIAFVCSFAYYVFPGYLFPMLVSVSWICWIYPNS 160 (647)
Q Consensus 81 Ag~lRr~lV~~~~l~~P~~la~a~l~~~lh~~~~~~~~~~s~~k~f~~~f~~~f~~~~~p~~l~p~L~~~~~~~w~~p~~ 160 (647)
||++||++|+|.+|.||++|++++|+|+||++|++++..+||+|||+++|.++|+|+|+|+|+||+|++++|.||+.|+|
T Consensus 198 AGl~Rk~lV~Pa~m~WPsnLvqvsLFraLHeke~~~~g~msR~rFF~ivfv~SFiyY~fPgylF~~Ls~~swvcW~~P~s 277 (761)
T KOG2262|consen 198 AGLFRKYLVYPASMWWPSNLVQVSLFRALHEKENKSKGNMSRYRFFLIVFVASFIYYWFPGYLFPILSSFSWVCWIWPSS 277 (761)
T ss_pred hhhhHhhccCcHhhcCcchhHHHHHHHHHHhhhhhcccCccchhhhhHHHHHHHHHHHhhHHHHHHHhhhheeeEecccc
Confidence 99999999999999999999999999999999887776799999999999999999999999999999999999999999
Q ss_pred cceeecccccccccccccccceeccccccCCcccccHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcCccccccC
Q 006390 161 VLAHQLGSGLHGLGIGAIGFDWSSISAYLGSPLASPWFATANIAAGFFLIMYVITPIAYWLNIFKAKTFPIFSDGLFTST 240 (647)
Q Consensus 161 ~~~~~~fg~~~GlGl~~~tfDW~~i~~~~g~gl~~p~~~~~~~~~G~vi~~~ii~P~~~~~~~~~~~~~P~~s~~~~d~~ 240 (647)
.+++|+||+.+|||+.|+||||+++++|+|||+.+|+++.+|+++|.++..+|+.|++||+|.|+.+++|++|+++||++
T Consensus 278 ~~~~qi~sg~~GLGi~~~tlDW~~IssylgSPLasP~~a~~n~~~gfvl~~~IV~Pi~Y~~n~~~a~~fPI~Ss~lf~~t 357 (761)
T KOG2262|consen 278 ITANQIGSGLTGLGIGPFTLDWSQISSYLGSPLASPFFAIANVFLGFVLFIYIVLPILYWTNTYDAKYFPIFSSSLFDHT 357 (761)
T ss_pred HHHHHhcccccccccccccccHHHHHHHcCCcchhhHHHHHHHhhhhhhhhhhhhhhHhhccceecceeceecCcceecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeceeeecCCCCCCHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhcCCChhhhhhh
Q 006390 241 GQNYNISAIINNNFLFDTEAYEREGPLYISTFFAMSYGVGFACLTATVVHVLLFHGREIWQLSKAAFEEKGMDVHTKLMR 320 (647)
Q Consensus 241 g~~y~~s~i~~~~~~~~~~~y~~~sp~~~~~~~~~~~~~~fa~~~~~~~~~~l~~~~~i~~~~k~~~~~~~~D~h~~lm~ 320 (647)
|++||+++|+|+|+++|.+|||+|||+|+++.++++||++||++++.++|++|+|+||||++.|++ .++++|+|+|+|+
T Consensus 358 G~sYnvt~Il~~~f~ld~~~Y~~ysp~yls~~falsygl~faa~~a~i~Hv~Lf~gkdiw~~~~~~-~~k~~DiHtrlMk 436 (761)
T KOG2262|consen 358 GNSYNVTKILDSKFELDLDKYQEYSPLYLSTFFALSYGLGFAALSATIVHVALFNGKDIWQQTKKA-FNKKMDIHTRLMK 436 (761)
T ss_pred CcEeceeeeecCccccchHHHhhcCCcceeHHHHHHHHHHHHHHHHHhhhheeeccHHHHHHHHhc-cccCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999988 4678899999999
Q ss_pred hcCCCCchHHHHHHHHHHHHHHhhhhhcccCCCcchHHHHHHHHHHHHHHhhheeeEeecCCCcchhHHHHHhhhhcccC
Q 006390 321 KYKQVPEWWFTCILLINIAATIFTCQYYNNQLQLPWWGVLLACVLALFFTLPVGVITATTNQTPALNVITEYIIGYIYPG 400 (647)
Q Consensus 321 ~y~~vP~ww~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~ilal~la~i~~~~~g~~~g~t~~~p~~~~~sqli~g~i~pg 400 (647)
+|||||+|||++++++++++++++|+.|+.+.|+|||++++|+++++++++|.|++.|.||++||+|+++|++.||++||
T Consensus 437 kYKeVP~WWf~~ili~s~~l~~~~~~~~~~~~q~PwWg~~va~~ia~vf~iPigii~AtTNq~~GLNiitE~i~Gy~~Pg 516 (761)
T KOG2262|consen 437 KYKEVPDWWFLAILIVSLGLGLAACEGYKTQVQLPWWGLLVACAIAFVFTIPIGIIQATTNQTPGLNIITEYIIGYIYPG 516 (761)
T ss_pred HhccCcHHHHHHHHHHHHHHHhhheeeecccccCchHHHHHHHHHHHHHhccHHHhhhhccCCccHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999995555999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHhhhhHHhhhhhhhhchhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCc
Q 006390 401 FPAANICFKVYGYISMKQGITFLQDLKLGHYMKIPPRAMFMAQVFGTIISALAHLGTAWWLMNTIPDICDREMLPSGSPW 480 (647)
Q Consensus 401 ~~~~nm~f~~~~~~~~~qA~~~~~DlK~G~yl~~pPr~~f~aQliG~ivg~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~ 480 (647)
+|+|||.||.||+++..||..++||||+|||||+|||.||.+|++||+++++|+.+|.+|++.+++++|+++ +++.|
T Consensus 517 rPiAn~~FK~yGyism~Qal~f~~DlKlghYMKIPPR~mF~~Q~v~tivs~~Vn~gv~~W~m~~I~~iC~~~---~~s~~ 593 (761)
T KOG2262|consen 517 RPIANLCFKTYGYISMTQALTFLQDLKLGHYMKIPPRSMFAVQLVGTIVAGFVNLGVAWWLMYSIPNICTTD---QNSPW 593 (761)
T ss_pred chHHHHHHHHhchhhHHHHHHHHhhccceeeecCChHHHHHHHHHHHHhheeeeHHhHHHHHhcccccccCC---CCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987 88999
Q ss_pred cccccchhhhhhhhhhhccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCccccccChHHHHhHhcccCCccc
Q 006390 481 TCPGDHVFYDASIIWGLIGPRRIFGDLGYYSSVNWFFFAGAVAPVLVWIAHKAFPNRPWIRHITMPVLLGATVNMPPATA 560 (647)
Q Consensus 481 ~~p~~~~~~~~sv~wg~igp~~lf~~g~~y~~~~~~~~iG~~~~i~~~ll~r~~p~~~~~~~i~~pv~~~g~~~~~p~~~ 560 (647)
|||..++++++|++||++||+|+|+.++.|+.+.|+|++|+++|+++|.++|++|+++|.+++|.|+++.|.+++||++.
T Consensus 594 TCP~~rvffnASvIWGlIGP~riF~~~g~Y~~l~wFFLiGa~~pv~vw~~~k~fPk~~w~~~i~~pvl~gg~~~mPpat~ 673 (761)
T KOG2262|consen 594 TCPSDRVFFNASVIWGLIGPKRIFGSLGIYPGLNWFFLIGALAPVLVWLLQKKFPKKKWIKQINPPVLFGGTANMPPATA 673 (761)
T ss_pred cCCCCceEEeceeeeecccchhhcCCCCccCcchHHHHHHHHhhHHHHHHHHhcchhhhhhccCcceEecccccCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999989999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHhcCcccccchhhhhhHhHhhhHHHHHHHHHHHHhcCCCCcccccCCCC-CCCCCCCCCCCcc
Q 006390 561 VNYTSWILIGFASGFIAYRYYRDWWSRHNYVLSGALDAGLAFMGVLLYLCLGMEHISLNWLKMQSD-GCPLASCPTEPGT 639 (647)
Q Consensus 561 ~~~~~~~~vG~~~~~~~rr~~~~w~~ky~~vlaagL~aG~ai~gii~~~~~~~~g~~~~wwgn~~~-~~~~~~~~~~~~~ 639 (647)
.|+++++++|+++|+++|||++.||+||||++|||||+|.+++++++||++++.|.+.+||||+++ +|+..+|+..+..
T Consensus 674 vny~sw~iv~fifny~i~r~~~~WW~kYNyvLsaaldaG~a~~~vliffcv~~~~~~~~WWGn~~~~~c~~a~cp~~~~v 753 (761)
T KOG2262|consen 674 VNYTSWAIVGFIFNYYIFRYRRSWWQKYNYVLSAALDAGVAFMGVLIFFCVQYPGISLNWWGNTVSAGCDLAGCPTAKGV 753 (761)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhcccchhHHHhHhhheeccCCCccccccCcCCCCCCccCCCcCCee
Confidence 999999999999999999999999999999999999999999999999999999999999999975 8999999998888
Q ss_pred cccCCCCC
Q 006390 640 VVKGCPVL 647 (647)
Q Consensus 640 ~~~~~~~~ 647 (647)
..+++|.|
T Consensus 754 ~~~~~~~f 761 (761)
T KOG2262|consen 754 VVSGCPVF 761 (761)
T ss_pred ecCCCCCC
Confidence 88777764
No 2
>TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family. This model represents a family of transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. A set of related proteins from the plant Arabidopsis thaliana forms an outgroup to the yeast set by neighbor joining analysis but is remarkably well conserved and is predicted here to have equivalent function.
Probab=100.00 E-value=3e-154 Score=1303.02 Aligned_cols=607 Identities=36% Similarity=0.763 Sum_probs=587.3
Q ss_pred CccccCCceeccCcceeEeecCCCCCcchhHHHhHhhhccchhhhHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHH
Q 006390 1 MAKTLPKKVFFEGRRFEFTFNPGPFHVKEHVLITIFANAGAGNVYAIHIVSVLKLFYKKELTFLVALLVVITTQVLGFGW 80 (647)
Q Consensus 1 ~a~~lP~~~~~~~~~~~~~lnPgpf~~kE~~~i~~~asaa~~~~~a~~~i~~~~~~y~~~~~~~~~il~~ls~~~lG~~~ 80 (647)
|||+||+|++. ..+++|+|||||||+|||+++|+|||++.+.+++++++.+|++||++++++++++++++++|++|+++
T Consensus 71 ~a~~lP~~~~~-~~g~~~~lNPGPF~~KEh~liti~a~~~~~~~y~~~~i~~~~~fy~~~~~~g~~il~~lstq~~G~g~ 149 (681)
T TIGR00727 71 WAKIIPDWTIT-IRGRKYNIIPGPFNVKEHMFITLMYAVSFGAAYTTDIILAQKLFYKSAFGFGYQFLLSLSTQFIGFGF 149 (681)
T ss_pred HHHHcCccccc-cccceeccCCCCCChhcceeeeeeeehhccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 68999999882 23467999999999999999999999999899999999999999999999999999999999999999
Q ss_pred HhhcccceecCCCCCCCchhHHHHHHHHhhhccccc--CCcccchhHHHHHHHHHHHHHhcccchhhhccccchhhhccc
Q 006390 81 AGLFRRYLVDPPTMWWPQNLVQVSLFRALHEKEKRS--AGGLTRNQFFLIAFVCSFAYYVFPGYLFPMLVSVSWICWIYP 158 (647)
Q Consensus 81 Ag~lRr~lV~~~~l~~P~~la~a~l~~~lh~~~~~~--~~~~s~~k~f~~~f~~~f~~~~~p~~l~p~L~~~~~~~w~~p 158 (647)
||++||++|+|++|+||+++++++|+|+||++++.. .|++||+|+|+++|+++|+|+|+|+|+||+|+.|+|.||++|
T Consensus 150 Ag~lRr~lV~p~~~iwPs~L~t~aL~~aLH~~~~~~~~gw~~sr~kfF~~~f~~sfvw~w~P~ylf~~Ls~f~w~cwi~P 229 (681)
T TIGR00727 150 AGILRRFVVYPARALWPTNLVTITINKALHGKENHEANGWKISRYKFFFLVFFASFIWNWFPTYIFQALSTFNWMTWIKP 229 (681)
T ss_pred HHHhhceEeccccCcCCCccHHHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhccC
Confidence 999999999999999999999999999999865432 377899999999999999999999999999999999999999
Q ss_pred Cccceeecccccccccccc-cccceeccccccCCcccccHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcCcccc
Q 006390 159 NSVLAHQLGSGLHGLGIGA-IGFDWSSISAYLGSPLASPWFATANIAAGFFLIMYVITPIAYWLNIFKAKTFPIFSDGLF 237 (647)
Q Consensus 159 ~~~~~~~~fg~~~GlGl~~-~tfDW~~i~~~~g~gl~~p~~~~~~~~~G~vi~~~ii~P~~~~~~~~~~~~~P~~s~~~~ 237 (647)
+|++++++||+.+|||++| +||||++++++.|+|+++|+++++|+++|.+++++++.|++||+|.|+++|+|++|+++|
T Consensus 230 ~n~~~~~i~g~~~GlGl~p~~tfDW~~I~~~~~spL~~P~~a~~n~~~G~~l~~~ii~P~lyy~N~w~~~~lPi~s~~~f 309 (681)
T TIGR00727 230 NNINLNQIFGGSTGLGINPISSFDWNQISGYINSPLVYPAWSYLTIYLGCILAFWIVIPAVYYSNTWYCQYLPISSNGLY 309 (681)
T ss_pred cchhhhhhhccccCCCcCCcCcccHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccCCccchhh
Confidence 9999999999999999999 999999998888999999999999999999999999999999999999999999999999
Q ss_pred ccCCcceeceeeecCCCCCCHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhcCCChhhh
Q 006390 238 TSTGQNYNISAIINNNFLFDTEAYEREGPLYISTFFAMSYGVGFACLTATVVHVLLFHGREIWQLSKAAFEEKGMDVHTK 317 (647)
Q Consensus 238 d~~g~~y~~s~i~~~~~~~~~~~y~~~sp~~~~~~~~~~~~~~fa~~~~~~~~~~l~~~~~i~~~~k~~~~~~~~D~h~~ 317 (647)
|++|++||+|||+|+|+++|+||||||||+|+++++++.|+++||+++++++|++|+|+|||++++|+ ++++|+|.|
T Consensus 310 d~~G~~Y~vs~il~~~~~ld~~~y~~ysp~~l~~~~al~yg~~fA~~~a~i~h~~l~~~~~i~~~~~~---~~~~D~h~r 386 (681)
T TIGR00727 310 DNFGHSYNVTEILDKDNKFDVKKYQSYSPPFYSTTNAVSYGLSFASIPLMITHSIIVHGKLLFNALKD---DDYPDPHSN 386 (681)
T ss_pred hcCCCccccceeeCCCCcCCHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc---CCCCChhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999984 567899999
Q ss_pred hhhhcCCCCchHHHHHHHHHHHHHHhhhhhcccCCCcchHHHHHHHHHHHHHHhhheeeEeecCCCcchhHHHHHhhhhc
Q 006390 318 LMRKYKQVPEWWFTCILLINIAATIFTCQYYNNQLQLPWWGVLLACVLALFFTLPVGVITATTNQTPALNVITEYIIGYI 397 (647)
Q Consensus 318 lm~~y~~vP~ww~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~ilal~la~i~~~~~g~~~g~t~~~p~~~~~sqli~g~i 397 (647)
+||+|||||+|||++++++++++++++++.+ ++++|||++++|+++++++.+|.|+++|+||+++++|+++|+++|++
T Consensus 387 lM~~Y~evP~WWy~~~l~is~~~~~~~v~~~--~t~lP~W~~~lal~l~~i~~iP~~~i~a~t~~~~~ln~l~eli~Gy~ 464 (681)
T TIGR00727 387 LMKAYKEVPDWWYLAVFLGFFGMGIATVEHW--PTETPVWGLFVCLIFNFVFLIPTTILQATTNISFGLNVLTEFIVGYA 464 (681)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHHHHhhhheEeecCCccchhHHHHHHhhhc
Confidence 9999999999999999999999999999988 89999999999999999999999999999999999999999999999
Q ss_pred ccCchhhHHHHHHHhhhhHHhhhhhhhhchhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q 006390 398 YPGFPAANICFKVYGYISMKQGITFLQDLKLGHYMKIPPRAMFMAQVFGTIISALAHLGTAWWLMNTIPDICDREMLPSG 477 (647)
Q Consensus 398 ~pg~~~~nm~f~~~~~~~~~qA~~~~~DlK~G~yl~~pPr~~f~aQliG~ivg~~v~~~v~~~~~~~~~~~~~~~~~~~~ 477 (647)
.||||++||+||++++++.+||.+++||||+|||||+|||+||.+|++|+++|++++++|++|++.+++|+|+++ ++
T Consensus 465 ~PG~p~a~~~fk~~g~~~~~qa~~~~~DlKlGhY~kiPPR~~F~~Q~~gtl~~~~v~~~v~~~~l~~i~~~c~~~---~~ 541 (681)
T TIGR00727 465 LPGRPLAMMIFKTFGYITDGQADNFVSDLKIGHYMKIPPRALFRGQCVATIWQIFVQIGVLNWAIGNIDNFCTAD---QN 541 (681)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCC---CC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987 89
Q ss_pred CCccccccchhhhhhhhhhhccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCccccccChHHHHhHhcccCC
Q 006390 478 SPWTCPGDHVFYDASIIWGLIGPRRIFGDLGYYSSVNWFFFAGAVAPVLVWIAHKAFPNRPWIRHITMPVLLGATVNMPP 557 (647)
Q Consensus 478 ~~~~~p~~~~~~~~sv~wg~igp~~lf~~g~~y~~~~~~~~iG~~~~i~~~ll~r~~p~~~~~~~i~~pv~~~g~~~~~p 557 (647)
++||||..++++++|++||++||+|+|++|++|+.++|++++|+++|++.++++|++|++ ++|++|.|+++.+.+++||
T Consensus 542 ~~ftcp~~~~~f~asv~Wg~iGP~r~F~~g~~Y~~l~~~fliGa~~pi~~~~~~r~~P~~-~~~~~n~pv~~~~~g~~~~ 620 (681)
T TIGR00727 542 AKYTCPNAVVFFNASVIWGVIGPKRIFSHGYIYPGLKWFWLIGACIGIFFWLVWKKWPKF-YPRYLDWPMLFVGTGYIPP 620 (681)
T ss_pred CCccCCCccceeehehhhhhcchHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHhcchh-hhhhCCccHHHhhccccCC
Confidence 999999999999999999999999999999999999999999999999999999999986 7899999999999999999
Q ss_pred ccchhhhHHHHHHHHHHHHHHhcCcccccchhhhhhHhHhhhHHHHHHHHHHHHhcCCCC
Q 006390 558 ATAVNYTSWILIGFASGFIAYRYYRDWWSRHNYVLSGALDAGLAFMGVLLYLCLGMEHIS 617 (647)
Q Consensus 558 ~~~~~~~~~~~vG~~~~~~~rr~~~~w~~ky~~vlaagL~aG~ai~gii~~~~~~~~g~~ 617 (647)
++.+++.++.++|+++|+|+||||++||+||||++|||||+|++++++++||+++++|.+
T Consensus 621 a~~~n~~s~~~vg~~f~~~irr~~~~ww~kYnYvlsAald~G~a~~~~iiff~v~~~~~~ 680 (681)
T TIGR00727 621 ATPYNYMYYTSVGLFFQYYMKKHHLNWWEKYNYVLSAGLDTGLVLSAIIIFFCLQLKDTA 680 (681)
T ss_pred cchhhHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHhHheeEEEeCCCC
Confidence 999999999999999999999999999999999999999999999999999999998763
No 3
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=100.00 E-value=2.6e-110 Score=962.18 Aligned_cols=576 Identities=40% Similarity=0.767 Sum_probs=520.5
Q ss_pred CccccCCceeccCcceeEeecCCCCCcchhHHHhHhhhccchhhhHHHHHHHHHHHhcCcccHHHHHHHHHHHHH--HHH
Q 006390 1 MAKTLPKKVFFEGRRFEFTFNPGPFHVKEHVLITIFANAGAGNVYAIHIVSVLKLFYKKELTFLVALLVVITTQV--LGF 78 (647)
Q Consensus 1 ~a~~lP~~~~~~~~~~~~~lnPgpf~~kE~~~i~~~asaa~~~~~a~~~i~~~~~~y~~~~~~~~~il~~ls~~~--lG~ 78 (647)
|+|+||+|+ ++||+|||||||+|||+++|+|||++++.+++.+++-+|+.||+++.++++++++++++|+ +|+
T Consensus 64 ~~~~lP~~~-----~~~~~lnpgpft~kE~~~iq~~asa~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~~~~~~~~lG~ 138 (654)
T TIGR00728 64 WALIIPDWE-----GWKFSLNPGPFNVKENNLIQTAASACGGLAYAIFILPAQKMFYTSNFSWGYQILLVWSTQLGFLGF 138 (654)
T ss_pred HHHhcCCcc-----ccceecCCCCCChhhheeEEeeeeccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhHH
Confidence 478899986 4789999999999999999999999998888888888888899999999999999999887 999
Q ss_pred HHHhhcccceecCCCCCCCchhHHHHHHHHhhhccccc-CCcccchhHHHHHHHHHHHHHhcccchhhhccccchhhhcc
Q 006390 79 GWAGLFRRYLVDPPTMWWPQNLVQVSLFRALHEKEKRS-AGGLTRNQFFLIAFVCSFAYYVFPGYLFPMLVSVSWICWIY 157 (647)
Q Consensus 79 ~~Ag~lRr~lV~~~~l~~P~~la~a~l~~~lh~~~~~~-~~~~s~~k~f~~~f~~~f~~~~~p~~l~p~L~~~~~~~w~~ 157 (647)
+||+++||++|+|++|+||+++|+++|+|+||++.... +++++| +. ..+ |.++|+.+..++|+||+.
T Consensus 139 ~~a~~lRr~lV~~~~l~~P~~la~a~l~~al~~~~~~~~g~~~~r--~l-~~~---------~~~~f~~~~~~~~~~~~~ 206 (654)
T TIGR00728 139 GFAGLLRRALVVPAKLPWPSGLATAELFKALHGKFHTANGDTIAK--NL-LRV---------LLKYFSSSFLWSFVSWFF 206 (654)
T ss_pred hhHHHhhhheeCcccccCCcccHHHHHHHHhhhccCccCCCccch--hH-HHh---------HHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999997653322 233444 22 111 556667777788999999
Q ss_pred cCccceeecccccccccccccccceeccccccCCcccccHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcCcccc
Q 006390 158 PNSVLAHQLGSGLHGLGIGAIGFDWSSISAYLGSPLASPWFATANIAAGFFLIMYVITPIAYWLNIFKAKTFPIFSDGLF 237 (647)
Q Consensus 158 p~~~~~~~~fg~~~GlGl~~~tfDW~~i~~~~g~gl~~p~~~~~~~~~G~vi~~~ii~P~~~~~~~~~~~~~P~~s~~~~ 237 (647)
|++..++ +|| |+|+++++|||+++++++|+|+++|+++++|+++|.+++|+++.|++||+|+|+++++|++|++.+
T Consensus 207 p~~~~~~-~fg---glg~~~~~f~w~~s~~~~g~gli~p~~~~~~~~~G~vl~~~ii~P~l~~~n~~~~~~~p~~s~~~~ 282 (654)
T TIGR00728 207 PGFTAFQ-TFG---GLGSGSIGFGWQQSSAYIGSGLITPFTVGLNMLLGVILAFGIVLPILYYKNTWPADADPIDSSSTI 282 (654)
T ss_pred cCCcccc-ccc---cccccccceecHHhHhhcCCCccCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCCCcchhhh
Confidence 9877664 455 789999999999998889999999999999999999999999999999999999999999999999
Q ss_pred ccCCcceec-eeeecCC-CCCCHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhcCCChh
Q 006390 238 TSTGQNYNI-SAIINNN-FLFDTEAYEREGPLYISTFFAMSYGVGFACLTATVVHVLLFHGREIWQLSKAAFEEKGMDVH 315 (647)
Q Consensus 238 d~~g~~y~~-s~i~~~~-~~~~~~~y~~~sp~~~~~~~~~~~~~~fa~~~~~~~~~~l~~~~~i~~~~k~~~~~~~~D~h 315 (647)
|++|.+|+. +++++++ .++|+++|++|||+|++.++ |+.+|+.++++++|..++|+|++++.+|+. .++.+|.|
T Consensus 283 ~~~~~~y~~~~~il~~~~~~l~~~~~~~~s~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~ 358 (654)
T TIGR00728 283 DSTGVRYNSVGLIVVDGLWTLVKPLYPIYSPLVLSIDF---YALLFNAFSDTIYSFALAHGRDIISARRDH-YKLGRDDH 358 (654)
T ss_pred cCCCceeeeeeEEEeCCCceecHHHHHHhCcceeeHHH---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-hhccCCCC
Confidence 999999999 9999877 79999999999999999999 899999999999999999999999998876 33445666
Q ss_pred hhhhhhc--------CCCCchHHHHHHHHHHHHHHhhhhhcccCCCcchHHHHHHHHHHHHHHhhheeeEeecCCCcchh
Q 006390 316 TKLMRKY--------KQVPEWWFTCILLINIAATIFTCQYYNNQLQLPWWGVLLACVLALFFTLPVGVITATTNQTPALN 387 (647)
Q Consensus 316 ~~lm~~y--------~~vP~ww~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~ilal~la~i~~~~~g~~~g~t~~~p~~~ 387 (647)
.+++|+| +|+|+|||+.++++++++++++++.+..++++|||++++++++++++++|.++++|+||...+++
T Consensus 359 ~~~~~~~~d~~~~~~~~vP~ww~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~ilal~l~~i~~~~~~~~~g~tnp~~~l~ 438 (654)
T TIGR00728 359 VRLLSRDEDLKVKNYKEVPAWWYLSLLLVSFGLGIVVVEYYFGITQLPWWGVIVALIIAFVLAIPIGILAGITNPVSGLN 438 (654)
T ss_pred hHHHhhcccccccccCcCcHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHhhhheEEeecccchhh
Confidence 6665555 99999999999999999999888887445899999999999999999999999999998888999
Q ss_pred HHHHHhhhhcccCchhhHHHHHHHhhhhHHhhhhhhhhchhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 006390 388 VITEYIIGYIYPGFPAANICFKVYGYISMKQGITFLQDLKLGHYMKIPPRAMFMAQVFGTIISALAHLGTAWWLMNTIPD 467 (647)
Q Consensus 388 ~~sqli~g~i~pg~~~~nm~f~~~~~~~~~qA~~~~~DlK~G~yl~~pPr~~f~aQliG~ivg~~v~~~v~~~~~~~~~~ 467 (647)
+++|+++|++.||++.+||+++++++++++||+|++||||+|||+|+|||+||.+|++|+++|++++++|++++.+++++
T Consensus 439 ~~~~li~g~~~pg~~~a~l~~~~~~~~~~~qA~~~~qDlK~G~y~~~pPR~~f~~Qiig~~vg~~v~~~v~~~~~~~~~~ 518 (654)
T TIGR00728 439 IITELIIGYILPGRPLANLAFKAYGFITAQQAGDFMQDLKTGHYMKAPPRAQFAAQLIGTIVGSLVNAPVLEWLYHAIGN 518 (654)
T ss_pred HHHHHhheeecCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987753
Q ss_pred CCCCCCCCCCCCccccccchhhhhhhhhhhccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCccccccChHH
Q 006390 468 ICDREMLPSGSPWTCPGDHVFYDASIIWGLIGPRRIFGDLGYYSSVNWFFFAGAVAPVLVWIAHKAFPNRPWIRHITMPV 547 (647)
Q Consensus 468 ~~~~~~~~~~~~~~~p~~~~~~~~sv~wg~igp~~lf~~g~~y~~~~~~~~iG~~~~i~~~ll~r~~p~~~~~~~i~~pv 547 (647)
++++|+||++++++++|++||++||+ +|+.+++|+.+.|++++| +++++.++.+|++|+ |.+++|+|+
T Consensus 519 --------~~~~~~~p~a~~~~~aa~~~g~~Gp~-~f~~~~~y~~~~~~~l~G-~~~i~~~~~~~~~p~--~~~~~~~~~ 586 (654)
T TIGR00728 519 --------QNNNFTCPNALVFYNASLIWGVIGPK-IFSGKGLYCGLMWFFLVG-VGAVLVWLVRKLFPK--WIKYINPPV 586 (654)
T ss_pred --------CCCCccCCcccchhhheeeeccccch-hcCCCCccHHHHHHHHHH-HHHHHHHHHHHHccc--hhhhcCHHH
Confidence 45789999999999999999999999 999999999999999999 899999999999886 678999999
Q ss_pred HHhHhcccCCccchhhhHHHHHHHHHHHHHHhcCcccc--cchhhhhhHhHhhhHHHHHHHHHHHHhc
Q 006390 548 LLGATVNMPPATAVNYTSWILIGFASGFIAYRYYRDWW--SRHNYVLSGALDAGLAFMGVLLYLCLGM 613 (647)
Q Consensus 548 ~~~g~~~~~p~~~~~~~~~~~vG~~~~~~~rr~~~~w~--~ky~~vlaagL~aG~ai~gii~~~~~~~ 613 (647)
++.+...+||..+.++.++.++|.++++++|||+++|| +||||++|||||+||+|+++++||++++
T Consensus 587 ~~~~~~~lp~~~~~~~~~~~~vG~~~~~~~~rr~~~~~~~~~y~~~laagL~~G~al~gviiff~~~~ 654 (654)
T TIGR00728 587 AVGGGGYIPPATAVNYSTWAAVGGFFNYRWRKNKRADWKAEKYNYVLAAGLIAGEALAGVIIFFCLGL 654 (654)
T ss_pred hhhhhhccCCcchhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHHHhccC
Confidence 88666667778888888888899999999999998876 9999999999999999999999998864
No 4
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=100.00 E-value=9.7e-109 Score=947.14 Aligned_cols=560 Identities=39% Similarity=0.740 Sum_probs=518.1
Q ss_pred ceeEeecCCCCCcchhHHHhHhhhccchhhhHHHHHHHHHH--HhcCcccHHHHHHHHHHHHHHHHHHHhhcccceecCC
Q 006390 15 RFEFTFNPGPFHVKEHVLITIFANAGAGNVYAIHIVSVLKL--FYKKELTFLVALLVVITTQVLGFGWAGLFRRYLVDPP 92 (647)
Q Consensus 15 ~~~~~lnPgpf~~kE~~~i~~~asaa~~~~~a~~~i~~~~~--~y~~~~~~~~~il~~ls~~~lG~~~Ag~lRr~lV~~~ 92 (647)
++++++||||||+||||++|+|||+++++++++++++++|+ ||++++++++++++++++|++|+++|+++||++|+|+
T Consensus 53 ~~~~~ln~gp~~~kE~~~vq~~asa~~~~~~a~~~i~~ipa~~~~~~~~~~~~~~l~~~~~~~lG~~~a~~lR~~lV~~~ 132 (624)
T PF03169_consen 53 GWRFSLNPGPFTIKENNLVQTMASAAGGMAYAAGFIAAIPALLFLGQPFSFGYLILWTLSTQLLGYGFAGPLRRFLVYPE 132 (624)
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhhheeccccEEecc
Confidence 46788999999999999999999999998999999999765 7899999999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHhhhcccccCCcccchhHHHHHHHHHHHHHhcccchhhhccccchhhhcccCccceeeccccccc
Q 006390 93 TMWWPQNLVQVSLFRALHEKEKRSAGGLTRNQFFLIAFVCSFAYYVFPGYLFPMLVSVSWICWIYPNSVLAHQLGSGLHG 172 (647)
Q Consensus 93 ~l~~P~~la~a~l~~~lh~~~~~~~~~~s~~k~f~~~f~~~f~~~~~p~~l~p~L~~~~~~~w~~p~~~~~~~~fg~~~G 172 (647)
+|+||+++|+++++++||++++ .+.+++|+|+|.++|.++++|+|+|+|+||+|++++|+||++|+|+..++++|+..
T Consensus 133 ~l~fP~~~a~a~~i~alh~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~- 210 (624)
T PF03169_consen 133 KLPFPSGLATAELINALHSGGG-WREAKSRAKFFGIAFLGSFIYYWLPQYIFPALSSFSWPCWIAPNNPWLNNLFGGWS- 210 (624)
T ss_pred cccCcchhHHHHHHHHhccCcc-chhhhhhHhHHHHHHHHHHHHHHHHHHHHhhhcccccceeeccccchHhhhcccce-
Confidence 9999999999999999999872 12246899999999999999999999999999999999999999999999988653
Q ss_pred ccccccccceeccccccCCcccccHHHHHHHHHHHHHHHHHHHHHHHhh-cccccCCCCCcCccccccCCcceeceeeec
Q 006390 173 LGIGAIGFDWSSISAYLGSPLASPWFATANIAAGFFLIMYVITPIAYWL-NIFKAKTFPIFSDGLFTSTGQNYNISAIIN 251 (647)
Q Consensus 173 lGl~~~tfDW~~i~~~~g~gl~~p~~~~~~~~~G~vi~~~ii~P~~~~~-~~~~~~~~P~~s~~~~d~~g~~y~~s~i~~ 251 (647)
++|||+.+. +|+|+++|+++++|+++|.+++|+++.|++|++ |.|+++++|++|+++||++|+
T Consensus 211 -----~~~dws~~~--~g~g~i~p~~~~ls~~~G~v~~w~ii~P~l~~~~~~~~~~~~p~~s~~~~~~~~~--------- 274 (624)
T PF03169_consen 211 -----FSFDWSPIL--IGSGLIVPLWAQLSMFLGAVLAWGIIIPILYYSGNAWGGAYLPFNSNSLFDNNGS--------- 274 (624)
T ss_pred -----eeEeecHHh--cCCCeeccHHHHHHHHHHHHHHHHhcCCeeeeeccccCCccccccchhhhhhcCc---------
Confidence 899999974 799999999999999999999999999999998 999999999999999999986
Q ss_pred CCCCCCHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh------hhcCCChhhhhhhhcCCC
Q 006390 252 NNFLFDTEAYEREGPLYISTFFAMSYGVGFACLTATVVHVLLFHGREIWQLSKAAF------EEKGMDVHTKLMRKYKQV 325 (647)
Q Consensus 252 ~~~~~~~~~y~~~sp~~~~~~~~~~~~~~fa~~~~~~~~~~l~~~~~i~~~~k~~~------~~~~~D~h~~lm~~y~~v 325 (647)
+|++.|.++|++|++++.+..+.++|+..|+.+++.++|.+++|+|++++++|++. +++++|+|+++||+|||+
T Consensus 275 ~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~v 354 (624)
T PF03169_consen 275 SDGTLNWTKYIGYGPMYGSGLFALSYGWSFAALTASIVHAILWHWKAIWQAFKQSKSSQRSSKSSEDDPHYRLMRTYKEV 354 (624)
T ss_pred cccccCHHHHHHHHHHHHhHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhhhhhcccccccccccCCchhhhhhhcCCc
Confidence 67889999999999999999999999999999999999999999999998886531 345689999999999999
Q ss_pred CchHHHHHHHHHHHHHHhhhhhcccCCCcchHHHHHHHHHHHHHHhhheeeEeecCCCc--chhHHHHHhhhhcccCchh
Q 006390 326 PEWWFTCILLINIAATIFTCQYYNNQLQLPWWGVLLACVLALFFTLPVGVITATTNQTP--ALNVITEYIIGYIYPGFPA 403 (647)
Q Consensus 326 P~ww~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~ilal~la~i~~~~~g~~~g~t~~~p--~~~~~sqli~g~i~pg~~~ 403 (647)
|+|||+.+++++++++++++..+..++++|+|+.++++++++++++|.++++|+||+|| ++++++|+++|++.||+++
T Consensus 355 P~ww~~~~~~~~~v~~~~~~~~~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t~~~P~~~~~~~sqli~g~~~pg~~~ 434 (624)
T PF03169_consen 355 PMWWYLAGLVVSFVLAIIVVEAWFGQTQMPWWGLILAILLAFVFSIPSGRITGETGINPVSGLNILSQLIFGLLLPGNPI 434 (624)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhcccCCchhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhhHHHHHHHHHHHhccHH
Confidence 99999999999999999999888445899999999999999999999999999999977 7999999999999999999
Q ss_pred hHHHHHHHhhhhHHhhhhhhhhchhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCcccc
Q 006390 404 ANICFKVYGYISMKQGITFLQDLKLGHYMKIPPRAMFMAQVFGTIISALAHLGTAWWLMNTIPDICDREMLPSGSPWTCP 483 (647)
Q Consensus 404 ~nm~f~~~~~~~~~qA~~~~~DlK~G~yl~~pPr~~f~aQliG~ivg~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~p 483 (647)
+||+++++++++++||+|++||||+|||+|+|||+||.+|++|+++|+++++++++++ +..+.|.++ +++.++||
T Consensus 435 a~l~~~~~~~~~~~qa~~~~~DlK~G~~l~~~Pr~~f~~Q~iG~~ig~~v~~~v~~l~--~~~~~~~~~---~~~~~~~~ 509 (624)
T PF03169_consen 435 ANLLFGGYGYAAASQAGDLMQDLKTGHYLGIPPRAQFYAQIIGTIIGAFVAVAVMRLL--NQAYPCGPD---QGDSFSCP 509 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhccCcc---ccccCcCc
Confidence 9999999999999999999999999999999999999999999999999999999987 677778754 55689999
Q ss_pred ccchhhhhhhhhhhccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCccccccChHHHHhHhcccCCccchhh
Q 006390 484 GDHVFYDASIIWGLIGPRRIFGDLGYYSSVNWFFFAGAVAPVLVWIAHKAFPNRPWIRHITMPVLLGATVNMPPATAVNY 563 (647)
Q Consensus 484 ~~~~~~~~sv~wg~igp~~lf~~g~~y~~~~~~~~iG~~~~i~~~ll~r~~p~~~~~~~i~~pv~~~g~~~~~p~~~~~~ 563 (647)
..|++.+++++|+++||+| +.+|..++|++++|++++++.++++|++|+. +++.|...++++...++
T Consensus 510 ap~a~~~aav~~g~~~~~~----~~~~~~~~~~~~~G~~~~i~~~l~~~~~P~~---------~~~~~~~~~~~~~~~~~ 576 (624)
T PF03169_consen 510 APQAFAWAAVAWGLIGPQR----GLPYSALPWGFLIGAVLPILFWLLQRKFPSP---------LAFGGASSIGFYLPSNY 576 (624)
T ss_pred chHHHHHHHHHHHhcCCcc----cchHHHHHHHHHHHHHHHHHHHHHHhhCChh---------heeeecccccccchhHH
Confidence 9999999999999999977 7899999999999999999999998887742 44445555666666778
Q ss_pred hHHHHHHHHHHHHHHhcCcccccchhhhhhHhHhhhHHHHHHHHHHH
Q 006390 564 TSWILIGFASGFIAYRYYRDWWSRHNYVLSGALDAGLAFMGVLLYLC 610 (647)
Q Consensus 564 ~~~~~vG~~~~~~~rr~~~~w~~ky~~vlaagL~aG~ai~gii~~~~ 610 (647)
++++++|.++++++|||+++||+||||++|||||+||+|++++++++
T Consensus 577 ~~~~~iG~~~~~~~~~~~~~~~~~y~~~laagl~aG~~l~~li~~~~ 623 (624)
T PF03169_consen 577 TSAIFIGGLFQFYWRRRYPKWWEKYNYVLAAGLIAGEALMGLIIAFL 623 (624)
T ss_pred HHHHHHHHHHHHHhhhcchhHHHhHhhHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999765
No 5
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=100.00 E-value=2.5e-62 Score=550.82 Aligned_cols=501 Identities=16% Similarity=0.142 Sum_probs=367.6
Q ss_pred CCCcchhHHHhHhhhccchhhhHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHHHHHHHhhcccceecCCCCCCCch
Q 006390 24 PFHVKEHVLITIFANAGAGNVYAIHIVSVLKLFYK----KELTFLVALLVVITTQVLGFGWAGLFRRYLVDPPTMWWPQN 99 (647)
Q Consensus 24 pf~~kE~~~i~~~asaa~~~~~a~~~i~~~~~~y~----~~~~~~~~il~~ls~~~lG~~~Ag~lRr~lV~~~~l~~P~~ 99 (647)
++|++|||++||+||++++. + ++++++|+++. ++++++..++++++.+++|+.|+.||||++|.+++|+|||+
T Consensus 51 ~~t~~EnnivQT~asA~~~~--a-g~~~~lPAl~~lg~~~~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~~~~L~fP~G 127 (591)
T TIGR00733 51 DRSILENNMVQTAASAAGTL--S-SVIFVLPALLMLGYWTEFPYWITTVICALGGSLGVLFTIPLRRAFVVESKLPYPEG 127 (591)
T ss_pred cCChhHHHHHHHHHHHHHHH--H-HHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCH
Confidence 58999999999999999874 4 58899999764 45789999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhcccccCCcccchhHHHHHHHHHHHHHhcccchhhhccccchhhhcccCccceeecccccccccccccc
Q 006390 100 LVQVSLFRALHEKEKRSAGGLTRNQFFLIAFVCSFAYYVFPGYLFPMLVSVSWICWIYPNSVLAHQLGSGLHGLGIGAIG 179 (647)
Q Consensus 100 la~a~l~~~lh~~~~~~~~~~s~~k~f~~~f~~~f~~~~~p~~l~p~L~~~~~~~w~~p~~~~~~~~fg~~~GlGl~~~t 179 (647)
+|+|+++++.++++ +.+|.|.++.++..+++|.++++ ++... ...-.|.. .|.+...++
T Consensus 128 ~A~Ae~l~~g~~g~-----~~~~~~~l~~g~~~s~~~~~~~~--~~~~~-~~~~~~~~-------------~g~~~~~~~ 186 (591)
T TIGR00733 128 VACAEVLKAGDKAR-----NGTGAKPIAYGGILASIYAFLGS--LRVWS-GTLSAAKL-------------VGRRALYFG 186 (591)
T ss_pred HHHHHHHHcccccc-----chhhHHHHHHHHHHHHHHHHHHH--hccCC-chHHHHHh-------------cCCcceEEE
Confidence 99999999743211 12578999999999999998842 11111 00111110 011111134
Q ss_pred cceeccccccCCcccccHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcCccccccCCcceeceeeecCCCCCCHH
Q 006390 180 FDWSSISAYLGSPLASPWFATANIAAGFFLIMYVITPIAYWLNIFKAKTFPIFSDGLFTSTGQNYNISAIINNNFLFDTE 259 (647)
Q Consensus 180 fDW~~i~~~~g~gl~~p~~~~~~~~~G~vi~~~ii~P~~~~~~~~~~~~~P~~s~~~~d~~g~~y~~s~i~~~~~~~~~~ 259 (647)
+| ..++++|.||++|+++.+++++|.+++|+++.|++..+++. ....|. . + ...
T Consensus 187 ~~--~SpalvG~G~ivG~~v~~s~~~G~vlaWgvl~P~l~~~~~~-~~~~~~-------~--~--------------~~~ 240 (591)
T TIGR00733 187 SD--LSLALIGVGYLVGLNIGFAMFLGGAIAWGVAIPIYTAKMGS-PGDLSA-------L--D--------------LAW 240 (591)
T ss_pred ec--ccHHHHcCceeeChHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCccH-------H--H--------------HHH
Confidence 55 45679999999999999999999999999999999865422 100010 0 0 011
Q ss_pred HHhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhcC-CChhhhhhhhcCCCCchHHHHHHHHHH
Q 006390 260 AYEREGPLYISTFFAMSYGVGFACLTATVVHVLLFHGREIWQLSKAAFEEKG-MDVHTKLMRKYKQVPEWWFTCILLINI 338 (647)
Q Consensus 260 ~y~~~sp~~~~~~~~~~~~~~fa~~~~~~~~~~l~~~~~i~~~~k~~~~~~~-~D~h~~lm~~y~~vP~ww~~~~~~~~~ 338 (647)
....+++||++++.|+..+ .+.+++..|.+++.+|+..+..+ ++.+.+..|.++|+|.|+...++++.
T Consensus 241 ~vw~~~vR~iGvg~m~~~g----------l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~dip~~~v~~~~~~~- 309 (591)
T TIGR00733 241 TIWSTKVRYIGVGAIVVAA----------LWTLLKLRGPIARGIKAGLEAARRRQAGEAVLRTEEDLPINIVLTLVALF- 309 (591)
T ss_pred HHHhcccchhhHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccHHHHHHHHHHH-
Confidence 1223459999999877522 23455678888777776543211 11112246778999998654433322
Q ss_pred HHHHhhhhhcccCCCcc--------h-HHHHHHHHHHHHHHhhheeeEee--cCCCc--chhHHHHHhhhhcc-------
Q 006390 339 AATIFTCQYYNNQLQLP--------W-WGVLLACVLALFFTLPVGVITAT--TNQTP--ALNVITEYIIGYIY------- 398 (647)
Q Consensus 339 ~~~~~~~~~~~~~~~lp--------~-~~~ilal~la~i~~~~~g~~~g~--t~~~p--~~~~~sqli~g~i~------- 398 (647)
++. ...+ .++.| + .+.+++++++++++...+++.|+ ||.|| +++|++|++++.+.
T Consensus 310 ~~~---~~~~--~~~~~~~~~~~~~~~~~~~la~vl~f~~a~v~g~~~G~iGts~nPvsg~~~~t~l~~a~~~~~~g~~~ 384 (591)
T TIGR00733 310 VIP---LADF--LLYAPILHNIGMAIAVMAVLMLIIGFFVAAIAGYMAGLVGSSNSPISGIGIMSVLFTALILKGLGLSG 384 (591)
T ss_pred HHH---HHHH--hcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHhcCccc
Confidence 221 1111 23333 3 57789999999999999999999 77798 79999999999998
Q ss_pred -----cCchhhHHHHHHHhhhhHHhhhhhhhhchhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 006390 399 -----PGFPAANICFKVYGYISMKQGITFLQDLKLGHYMKIPPRAMFMAQVFGTIISALAHLGTAWWLMNTIPDICDREM 473 (647)
Q Consensus 399 -----pg~~~~nm~f~~~~~~~~~qA~~~~~DlK~G~yl~~pPr~~f~aQliG~ivg~~v~~~v~~~~~~~~~~~~~~~~ 473 (647)
|+...+|++.+++.+.+++||+|++||||+||++|++||+||++|++|+++|++++++++.++.+++ ++..+..
T Consensus 385 ~~~~~~~~v~~~L~~g~vv~~aa~~AgD~mqDlKtG~LlGatPr~Q~~aq~iG~~vg~~v~~~v~~ll~~ay-g~~~~~~ 463 (591)
T TIGR00733 385 TGSQIPELMAATIFTAAVVCTAAAISNDNLQDLKTGYLVGATPWRQQVALIIGTFVGALVMAPVLNLLIKAY-GIAGTPT 463 (591)
T ss_pred CccccchhHHHHHHHHHHHHHHHHHHHHHhHhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccccc
Confidence 3446788999999999999999999999999999999999999999999999999999998888776 4322111
Q ss_pred CCCCCCccccccchhhhhhhhhhhccccccccCCCchhhHHHHH-HHHHHHHHHHHHHHHhCCCCccccccChHHHHhHh
Q 006390 474 LPSGSPWTCPGDHVFYDASIIWGLIGPRRIFGDLGYYSSVNWFF-FAGAVAPVLVWIAHKAFPNRPWIRHITMPVLLGAT 552 (647)
Q Consensus 474 ~~~~~~~~~p~~~~~~~~sv~wg~igp~~lf~~g~~y~~~~~~~-~iG~~~~i~~~ll~r~~p~~~~~~~i~~pv~~~g~ 552 (647)
.++++.|++|++..+ ++++.|+.++ .++|.+ .+|+++++++.++++..++++ ++++.|.+.+|+
T Consensus 464 ~~~~~~l~APqA~l~--~ava~gi~~~-----------~l~~~~i~~ga~~g~~l~~~~~~~~~~~--~~~~~p~lavgi 528 (591)
T TIGR00733 464 AKGENALPAPQAFLM--AAVTEGVFTG-----------TLEWTMVFIGAGIGIALIIIDEILAKRG--SKFRTPVMAVGV 528 (591)
T ss_pred CCCccccCCCHHHHH--HHHHhhhcCC-----------CccHHHHHHHHHHHHHHHHHHHHhhhcc--cccCCchhHHHH
Confidence 234567999987665 4666666543 345654 477777777777766555432 234457777899
Q ss_pred cccCCccchhhhHHHHHHHHHHHHHHhcCccc------ccchhhhhhHhHhhhHHHHHHHHHH
Q 006390 553 VNMPPATAVNYTSWILIGFASGFIAYRYYRDW------WSRHNYVLSGALDAGLAFMGVLLYL 609 (647)
Q Consensus 553 ~~~~p~~~~~~~~~~~vG~~~~~~~rr~~~~w------~~ky~~vlaagL~aG~ai~gii~~~ 609 (647)
|+|.|.+ ++..+++|.+..++|+|++++. .++|.+++||||++||+|+|++++.
T Consensus 529 g~yLP~~---~s~~~~iG~li~~~~~r~~~~~~~~~~~~~~~g~~vASGLIaGE~l~Gv~~A~ 588 (591)
T TIGR00733 529 GIYLPLS---LGVPILLGAFLARILVSRGRKEGESFTDKKRLGVLGAAGLIVGESLTGVVFAA 588 (591)
T ss_pred Hhhcchh---HHHHHHHHHHHHHHHHHhcccccchhhhhhceeeEEecHhhcchHHHHHHHHH
Confidence 9998875 4688999999999999976532 2467899999999999999999854
No 6
>COG1297 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.7e-49 Score=426.98 Aligned_cols=517 Identities=17% Similarity=0.135 Sum_probs=365.7
Q ss_pred CCCcchhHHHhHhhhccchhhhHHHHHHHHHHH----hcCcccHHHHHHHHHHHHHHHHHHHhhcccceecCCCCCCCch
Q 006390 24 PFHVKEHVLITIFANAGAGNVYAIHIVSVLKLF----YKKELTFLVALLVVITTQVLGFGWAGLFRRYLVDPPTMWWPQN 99 (647)
Q Consensus 24 pf~~kE~~~i~~~asaa~~~~~a~~~i~~~~~~----y~~~~~~~~~il~~ls~~~lG~~~Ag~lRr~lV~~~~l~~P~~ 99 (647)
++|+.|||++||+||++++ +++++|+++|.. |++++++++...++..++++|+.|+.||||.+|.++|++|||+
T Consensus 64 ~~silENNmVQT~ASAagt--lsa~vIFviPgl~m~g~w~~fpf~~t~~i~~lggiLGvlftiPLRra~Iv~skLPyPeG 141 (624)
T COG1297 64 GSSILENNMVQTQASAAGT--LSAGVIFVLPGLLMLGYWSGFPFWQTAIICALGGILGVLFTIPLRRAMIVESKLPYPEG 141 (624)
T ss_pred ccchhhhHHHHHHHhhhcc--ccccEEEechhHHhhccccCCcHHHHHHHHHHHhhcceEEEEEeeeeeeccCCCCCCCc
Confidence 7899999999999999987 667799999972 6789999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhcccccCCcccchhHHHHHHHHHHHHHhcccchhhhccccchhhhcccCccceeecccccccccccccc
Q 006390 100 LVQVSLFRALHEKEKRSAGGLTRNQFFLIAFVCSFAYYVFPGYLFPMLVSVSWICWIYPNSVLAHQLGSGLHGLGIGAIG 179 (647)
Q Consensus 100 la~a~l~~~lh~~~~~~~~~~s~~k~f~~~f~~~f~~~~~p~~l~p~L~~~~~~~w~~p~~~~~~~~fg~~~GlGl~~~t 179 (647)
.|+||++++..++|.++ |..|...++...+++|.++.+.+-=+-+. +-.|++-. .+...+ +
T Consensus 142 vAaAEvL~~g~~~~gd~----~g~~~i~~g~~~~~~~~~l~~g~~~~~~~--~~~~~~~~--------~~~~~l-----g 202 (624)
T COG1297 142 VAAAEVLKAGNQREGDA----SGIKLIALGGALAALYSLLASGLRVIASS--LSAAFSVG--------RAAFAL-----G 202 (624)
T ss_pred hhHHHHHHhcCCCCCCc----ccchhhhhhhHHHHHHHHHhccceeehhh--HHHHHHhc--------chhhhh-----c
Confidence 99999999986444332 67888889999999998887631111111 11222200 001112 2
Q ss_pred cceeccccccCCcccccHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcCccccccCCcceeceeeecCCCCCCHH
Q 006390 180 FDWSSISAYLGSPLASPWFATANIAAGFFLIMYVITPIAYWLNIFKAKTFPIFSDGLFTSTGQNYNISAIINNNFLFDTE 259 (647)
Q Consensus 180 fDW~~i~~~~g~gl~~p~~~~~~~~~G~vi~~~ii~P~~~~~~~~~~~~~P~~s~~~~d~~g~~y~~s~i~~~~~~~~~~ 259 (647)
.| ..++++|.|+++++.+.+.++.|.+++|++..|++-+...- |. | +. .-.+..
T Consensus 203 ~~--~S~AliG~GylvGl~~~iaml~G~~iaWgvavP~~~~~~~~-----p~------~---~~----------~~~~a~ 256 (624)
T COG1297 203 LG--LSLALIGAGYLVGLPAGIAMLIGIFIAWGVAVPLLTLIVPG-----PS------D---QE----------AGVQAW 256 (624)
T ss_pred cc--ccHHHhCceEEecchHHHHHHHHHHHHHHHHHHHHHhcccC-----CC------c---hh----------HHHHHH
Confidence 22 33578999999999999999999999999999987543311 11 0 00 001122
Q ss_pred HHhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhcC-CChhhhhhhhcCCCCchHHHHHHHHHH
Q 006390 260 AYEREGPLYISTFFAMSYGVGFACLTATVVHVLLFHGREIWQLSKAAFEEKG-MDVHTKLMRKYKQVPEWWFTCILLINI 338 (647)
Q Consensus 260 ~y~~~sp~~~~~~~~~~~~~~fa~~~~~~~~~~l~~~~~i~~~~k~~~~~~~-~D~h~~lm~~y~~vP~ww~~~~~~~~~ 338 (647)
++.+...||++++.+. ..-.|+++...|.+.|..|+.++.-. +....+..|.++|+|..|-...++...
T Consensus 257 ~vW~s~VrfIGaG~i~----------i~~~wtl~~l~~pi~~gi~~~f~~~r~~~~~~~~~rte~Dl~~~~~~~~~~~~~ 326 (624)
T COG1297 257 KVWSSKVRFIGAGAIA----------IAAIWTLISLLGPILRGIKATFESARGRRRAGAVSRTERDLPPKLVLLVLLATV 326 (624)
T ss_pred HHhhheeEEeehhHHH----------HHHHHHHHHHHhHHHHHHHHHHHHhhcccccccccchhhcCChhhHHHHHHHHH
Confidence 2333347999999754 23457777888888777776542211 111112237899999987666555444
Q ss_pred HHHHhhhhhcccCC-------CcchHHHHHHHHHHHHHHhhheeeEeecCCC--c--chhHHHHHhhhhcc---------
Q 006390 339 AATIFTCQYYNNQL-------QLPWWGVLLACVLALFFTLPVGVITATTNQT--P--ALNVITEYIIGYIY--------- 398 (647)
Q Consensus 339 ~~~~~~~~~~~~~~-------~lp~~~~ilal~la~i~~~~~g~~~g~t~~~--p--~~~~~sqli~g~i~--------- 398 (647)
+-..+.......++ .+-.-+.+++++++|+++-..|++.|..+.. | |+++++.++.+.++
T Consensus 327 v~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~v~GflvaAv~gymagLVgSssspiSGi~i~~v~~~~l~~l~~G~~~~~ 406 (624)
T COG1297 327 VALGLLLAHFLRGTPLSSCRWLLVVVMVLIAVVIGFLVAAVCGYMAGLVGSSSSPISGIGILSVTLLSLLILILGQSGGL 406 (624)
T ss_pred HHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchHHHHHHHHHHHHHHHhcccccc
Confidence 33333333221111 2235567788888999999999988876663 3 78887776664432
Q ss_pred ---cCc----hhhHHHHHHHhhhhHHhhhhhhhhchhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 006390 399 ---PGF----PAANICFKVYGYISMKQGITFLQDLKLGHYMKIPPRAMFMAQVFGTIISALAHLGTAWWLMNTIPDICDR 471 (647)
Q Consensus 399 ---pg~----~~~nm~f~~~~~~~~~qA~~~~~DlK~G~yl~~pPr~~f~aQliG~ivg~~v~~~v~~~~~~~~~~~~~~ 471 (647)
|.. ...+++..++.+.++.+++|++||||+||++|++||+||.+|++|+++++++..+|++++.+++.-..++
T Consensus 407 ~~~~~~~~~~~~~~~~t~~vv~a~A~is~DnlQDLKTG~LvgATPwkQqvaliiG~~~~alvi~pvL~ll~~aYgf~ga~ 486 (624)
T COG1297 407 FIDPLMRKFLVAATLFTASVVAAVAAISNDNLQDLKTGYLVGATPWKQQVALIIGCFVGALVIAPVLELLNKAYGFAGAP 486 (624)
T ss_pred ccCcccchhHHHHHHHHHHHHHHHHHhhccchhhhhhCeeecCChHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCcCCCC
Confidence 321 2456666788899999999999999999999999999999999999999999999999887666433332
Q ss_pred CCCCCCCCccccccchhhhhhhhhhhccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCccccccChHHHHhH
Q 006390 472 EMLPSGSPWTCPGDHVFYDASIIWGLIGPRRIFGDLGYYSSVNWFFFAGAVAPVLVWIAHKAFPNRPWIRHITMPVLLGA 551 (647)
Q Consensus 472 ~~~~~~~~~~~p~~~~~~~~sv~wg~igp~~lf~~g~~y~~~~~~~~iG~~~~i~~~ll~r~~p~~~~~~~i~~pv~~~g 551 (647)
. . +....++|| +..++++.-| +|++...|..+..+.++|+.+....+.++|++ .+...|++.+|
T Consensus 487 ~-r-~~~~l~apq--a~lma~ia~G------vf~~~lew~mi~~g~~~gi~lI~id~~l~~~~------~~~~lpvlAvG 550 (624)
T COG1297 487 P-R-QGMDLAAPQ--ATLMATIAKG------VFTGNLEWSMILAGAGIGIVLIGIDERLKGRG------GKLRLPVLAVG 550 (624)
T ss_pred C-C-CCCCCcchH--HHHHHHHhcc------cCCCCcchHHHHHHHhHhheeeeccHHHhcCC------ccccccceeee
Confidence 2 1 222256665 5566666544 46666677766666667776666777665532 23347888899
Q ss_pred hcccCCccchhhhHHHHHHHHHHHHHHhc-------CcccccchhhhhhHhHhhhHHHHHHHHHHHHhcCCC
Q 006390 552 TVNMPPATAVNYTSWILIGFASGFIAYRY-------YRDWWSRHNYVLSGALDAGLAFMGVLLYLCLGMEHI 616 (647)
Q Consensus 552 ~~~~~p~~~~~~~~~~~vG~~~~~~~rr~-------~~~w~~ky~~vlaagL~aG~ai~gii~~~~~~~~g~ 616 (647)
+|.|+|.+. +..+++|.+..|.+.|+ +.+.-++..+++||||+.||+|+|++++.....+|.
T Consensus 551 vGIylP~s~---~ipi~vG~~l~~~v~~~~~~~~~~~~e~~~r~gvl~aaGLIvGEsL~gvi~a~ii~~~g~ 619 (624)
T COG1297 551 VGIYLPPSL---TIPIFVGGVLRWAVDRKLKKGDERYKERAKRIGVLFAAGLIVGESLFGVITALIIVGSGK 619 (624)
T ss_pred eeeecChhh---chHHHHHHHHHHHHHHhcccccchhhhcccceeEEEeeccccchHHHHHHHHHHheecCC
Confidence 999877543 46789999998888876 233456688999999999999999999665555443
No 7
>COG0628 yhhT Predicted permease, member of the PurR regulon [General function prediction only]
Probab=87.12 E-value=4.5 Score=43.75 Aligned_cols=159 Identities=16% Similarity=0.237 Sum_probs=82.9
Q ss_pred HHHHHHhhhHHHHHHHHHhhhhcCCChhhhh-hhhcCCCCchHHHHHHHHHHHHHHhhhhhcccCCCcchHHHHHHHHHH
Q 006390 288 VVHVLLFHGREIWQLSKAAFEEKGMDVHTKL-MRKYKQVPEWWFTCILLINIAATIFTCQYYNNQLQLPWWGVLLACVLA 366 (647)
Q Consensus 288 ~~~~~l~~~~~i~~~~k~~~~~~~~D~h~~l-m~~y~~vP~ww~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~ilal~la 366 (647)
++.-++.+++++++.+++...++.++..++. .+.++.+-.+.. .-.+++++.++.+...+ .-.++|. +.+.
T Consensus 167 ~~ff~L~d~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~y~~-gq~i~al~~gi~~~igl-~ilgvp~-alll----- 238 (355)
T COG0628 167 LLFFLLLDGERLRRKLIKLLPRKLRKRARRILSEVNATLSGYLR-GQVLVALIVGILTGIGL-LILGVPY-ALLL----- 238 (355)
T ss_pred HHHHHHcCHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHcccH-HHHH-----
Confidence 4444677788888887665322222222222 222444444433 33333444443322211 0122322 2222
Q ss_pred HHHHhhheeeEeecCCCc----chhHHHHHhhhhcccCchhhHHHHHHHhhhhHHhhh-hhhhhchhhhhcCCChHHHHH
Q 006390 367 LFFTLPVGVITATTNQTP----ALNVITEYIIGYIYPGFPAANICFKVYGYISMKQGI-TFLQDLKLGHYMKIPPRAMFM 441 (647)
Q Consensus 367 ~i~~~~~g~~~g~t~~~p----~~~~~sqli~g~i~pg~~~~nm~f~~~~~~~~~qA~-~~~~DlK~G~yl~~pPr~~f~ 441 (647)
|.+.|.++.-| .+..+--.+.++...| +. ......++....+|-. +++...=.|+-+|++|=..+.
T Consensus 239 -------gil~g~~~lIP~iG~~i~~ip~~i~al~~~~-~~-~~l~~~~~~~vi~~i~~n~l~P~l~g~~~~l~p~~ili 309 (355)
T COG0628 239 -------GLLAGLLSLIPYIGPVIGLIPAVIIALLQGG-PW-GALLVLIVFLVIQQIEGNILRPKLMGKRLGLHPLVILL 309 (355)
T ss_pred -------HHHHHHHHhhcccccHHHHHHHHHHHHHhcc-hH-HHHHHHHHHHHHHHHhcceeccccccccCCCCHHHHHH
Confidence 33333444444 2444444555555554 22 2222334455555444 457788899999999999999
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHh
Q 006390 442 AQVFGT----IISALAHLGTAWWLMN 463 (647)
Q Consensus 442 aQliG~----ivg~~v~~~v~~~~~~ 463 (647)
+.+.|. ++|.++.++++-.+..
T Consensus 310 sll~g~~l~G~~G~ila~pl~~~~k~ 335 (355)
T COG0628 310 SLLGGGSLFGFVGLILAPPLAAVLKV 335 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887 5677777777655443
No 8
>TIGR02872 spore_ytvI sporulation integral membrane protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E. Second, mutation leads to a sporulation defect. Third, it if found in exactly those genomes whose bacteria are capable of sporulation, except for being absent in Clostridium acetobutylicum ATCC824. This protein has extensive hydrophobic regions and is likely an integral membrane protein.
Probab=77.56 E-value=24 Score=37.43 Aligned_cols=41 Identities=10% Similarity=0.050 Sum_probs=32.4
Q ss_pred hhhhhhhchhhhhcCCChHHHHHHHHHHHH----HHHHHHHHHHH
Q 006390 419 GITFLQDLKLGHYMKIPPRAMFMAQVFGTI----ISALAHLGTAW 459 (647)
Q Consensus 419 A~~~~~DlK~G~yl~~pPr~~f~aQliG~i----vg~~v~~~v~~ 459 (647)
-.+.++-.=.|.-+++||=..+.+.+.|.- +|.++.++++-
T Consensus 286 ~~~~l~P~i~g~~~~l~p~~vl~~~l~g~~~~G~~G~~l~~~~~~ 330 (341)
T TIGR02872 286 LRQILEPKVVSSSIGLHPLATLISMYIGLKLFGFLGLIFGPVIVV 330 (341)
T ss_pred HHHhHhhHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777999999999999999998874 56677766543
No 9
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=75.29 E-value=42 Score=39.30 Aligned_cols=24 Identities=13% Similarity=0.016 Sum_probs=13.7
Q ss_pred hHhcccCCccchhhhHHHHHHHHHHHH
Q 006390 550 GATVNMPPATAVNYTSWILIGFASGFI 576 (647)
Q Consensus 550 ~g~~~~~p~~~~~~~~~~~vG~~~~~~ 576 (647)
.|.+++.|... ...+++|.++.++
T Consensus 220 ~g~g~i~p~~~---~ls~~~G~v~~w~ 243 (624)
T PF03169_consen 220 IGSGLIVPLWA---QLSMFLGAVLAWG 243 (624)
T ss_pred cCCCeeccHHH---HHHHHHHHHHHHH
Confidence 46666555432 3446677776653
No 10
>PF01594 UPF0118: Domain of unknown function DUF20; InterPro: IPR002549 This is a family of hypothetical proteins. A number of the sequence records state they are transmembrane proteins or putative permeases. It is not clear what source suggested that these proteins might be permeases and this information should be treated with caution.
Probab=71.78 E-value=53 Score=34.66 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=37.0
Q ss_pred HHhhhhHHhhh-hhhhhchhhhhcCCChHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 006390 410 VYGYISMKQGI-TFLQDLKLGHYMKIPPRAMFMAQVFGTI----ISALAHLGTAWWL 461 (647)
Q Consensus 410 ~~~~~~~~qA~-~~~~DlK~G~yl~~pPr~~f~aQliG~i----vg~~v~~~v~~~~ 461 (647)
.+.....+|-. ++++-.=.|+-+|+||-..+.+.++|.. +|.++.+++...+
T Consensus 263 ~~~~~~i~~~~~~il~P~i~g~~~~i~p~~~l~~~~~g~~~fG~~G~il~~pi~~~~ 319 (327)
T PF01594_consen 263 LIVFIVIQQLEDNILRPKIMGRSLGIHPLLILLAVIIGGYLFGFIGLILAPPILAVI 319 (327)
T ss_pred HHHHHHHHHHhcccccchhhhcccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34444555544 4556666899999999999999999884 5777777765443
No 11
>PRK12287 tqsA pheromone autoinducer 2 transporter; Reviewed
Probab=68.00 E-value=70 Score=34.49 Aligned_cols=49 Identities=14% Similarity=0.235 Sum_probs=37.7
Q ss_pred HhhhhHHhh-hhhhhhchhhhhcCCChHHHHHHHHHHH----HHHHHHHHHHHH
Q 006390 411 YGYISMKQG-ITFLQDLKLGHYMKIPPRAMFMAQVFGT----IISALAHLGTAW 459 (647)
Q Consensus 411 ~~~~~~~qA-~~~~~DlK~G~yl~~pPr~~f~aQliG~----ivg~~v~~~v~~ 459 (647)
..+...+|. +++.+-.=.|+-+++||=..+.+.++|. ++|.++++++.-
T Consensus 266 i~~~iiq~i~~nvi~P~i~g~~v~l~P~~vllsil~gg~l~G~~G~ilavPl~~ 319 (344)
T PRK12287 266 AGYLLINLVFGNILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLTI 319 (344)
T ss_pred HHHHHHHHHHhcchhhhhhhccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 444555555 5678888899999999999999999887 567778877654
No 12
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=58.01 E-value=1.5e+02 Score=34.98 Aligned_cols=21 Identities=14% Similarity=0.131 Sum_probs=16.1
Q ss_pred CHHHHhhcCCcchhHHHHHHH
Q 006390 257 DTEAYEREGPLYISTFFAMSY 277 (647)
Q Consensus 257 ~~~~y~~~sp~~~~~~~~~~~ 277 (647)
+++.|++++.||.+++.++..
T Consensus 278 s~~~~~~~~~~y~~~~~il~~ 298 (654)
T TIGR00728 278 SSSTIDSTGVRYNSVGLIVVD 298 (654)
T ss_pred chhhhcCCCceeeeeeEEEeC
Confidence 456788889999998877753
No 13
>PRK10983 putative inner membrane protein; Provisional
Probab=57.69 E-value=97 Score=33.85 Aligned_cols=46 Identities=9% Similarity=-0.033 Sum_probs=33.4
Q ss_pred HHhhhhhhhhchhhhhcCCChHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 006390 416 MKQGITFLQDLKLGHYMKIPPRAMFMAQVFGTI----ISALAHLGTAWWL 461 (647)
Q Consensus 416 ~~qA~~~~~DlK~G~yl~~pPr~~f~aQliG~i----vg~~v~~~v~~~~ 461 (647)
..+..+.++-+=.|.-+++||=..+.+.+.|.. +|.++.+.++..+
T Consensus 288 v~~idnil~P~l~g~~~~l~~~~il~~~~~G~~~fG~~G~~lgp~i~a~~ 337 (368)
T PRK10983 288 VGTLDNVIRPMLIRMGADLPMILILSGVIGGLIAFGMIGLFIGPVVLAVS 337 (368)
T ss_pred HHHhhheeeeeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677777899999999999999988875 4556666555443
No 14
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=43.89 E-value=5.9e+02 Score=29.79 Aligned_cols=108 Identities=12% Similarity=0.074 Sum_probs=60.9
Q ss_pred cchHHHHHHHHHHHHHHhhheeeEeecCCCcchhHHHHH----hhhhcccCchhhHHHHHHHhhhhHHhhhhhhhhc---
Q 006390 354 LPWWGVLLACVLALFFTLPVGVITATTNQTPALNVITEY----IIGYIYPGFPAANICFKVYGYISMKQGITFLQDL--- 426 (647)
Q Consensus 354 lp~~~~ilal~la~i~~~~~g~~~g~t~~~p~~~~~sql----i~g~i~pg~~~~nm~f~~~~~~~~~qA~~~~~Dl--- 426 (647)
+.+-++++.++++.+++..+.|+-=.+|..++.++.+-+ +.-.+.+.++..|.+..+.+..+.+.++ +.--+
T Consensus 2 lT~Ravi~G~~lg~l~~asn~YlgLk~G~t~~~sI~aAil~~~ilr~~~~~t~~EnnivQT~asA~~~~ag-~~~~lPAl 80 (591)
T TIGR00733 2 YTVRGFILGALITIIFTAANVYLGLYVGMTFAASIPAAVISMAVLMAFRDRSILENNMVQTAASAAGTLSS-VIFVLPAL 80 (591)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 445667777777777777677665566666644433332 3333334455555555544433222221 11111
Q ss_pred -hhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006390 427 -KLGHYMKIPPRAMFMAQVFGTIISALAHLGTAWWLM 462 (647)
Q Consensus 427 -K~G~yl~~pPr~~f~aQliG~ivg~~v~~~v~~~~~ 462 (647)
.+|+.-..|...+...=+.|.++|.+..++.-+.+.
T Consensus 81 ~~lg~~~~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I 117 (591)
T TIGR00733 81 LMLGYWTEFPYWITTVICALGGSLGVLFTIPLRRAFV 117 (591)
T ss_pred HhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 123322346677777888999999999999655543
No 15
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=31.11 E-value=2.1e+02 Score=27.14 Aligned_cols=27 Identities=37% Similarity=0.409 Sum_probs=22.9
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHh
Q 006390 437 RAMFMAQVFGT-IISALAHLGTAWWLMN 463 (647)
Q Consensus 437 r~~f~aQliG~-ivg~~v~~~v~~~~~~ 463 (647)
..-..+|++|| ++|+++++++..+++.
T Consensus 90 ~~a~lGEviGTGiIGal~sypva~~~~g 117 (150)
T PF09512_consen 90 WAAALGEVIGTGIIGALLSYPVAKLFMG 117 (150)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHhC
Confidence 45678999998 6899999999988874
No 16
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=28.38 E-value=2e+02 Score=29.17 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=23.6
Q ss_pred cCCCCchHHHHHHHHHHHHHHhhhhhcccCCCcchHHHHHHHHHHHHHH
Q 006390 322 YKQVPEWWFTCILLINIAATIFTCQYYNNQLQLPWWGVLLACVLALFFT 370 (647)
Q Consensus 322 y~~vP~ww~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~ilal~la~i~~ 370 (647)
++.+++| -+..+++.+++.+++-.+ ++-+|+.+++++.++++.+
T Consensus 24 dp~l~~~-ml~a~l~~~~v~v~ig~l----~~~~~~~~i~gi~~g~l~a 67 (224)
T PF13829_consen 24 DPKLPWL-MLGAFLGPIAVFVLIGLL----FGSWWYWLIIGILLGLLAA 67 (224)
T ss_pred CcchHHH-HHHHHHHHHHHHHHHHHH----HccHHHHHHHHHHHHHHHH
Confidence 5555543 444444444444333333 3456777777777777654
No 17
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=25.06 E-value=3.6e+02 Score=30.39 Aligned_cols=19 Identities=5% Similarity=0.123 Sum_probs=13.7
Q ss_pred CCchHHHHHHHHHHHHHHh
Q 006390 325 VPEWWFTCILLINIAATIF 343 (647)
Q Consensus 325 vP~ww~~~~~~~~~~~~~~ 343 (647)
.++++|+...++.+++.++
T Consensus 251 ~~~~~~~~~~~l~~~~li~ 269 (465)
T PF03606_consen 251 KRPKLYLLLPVLPFVLLIY 269 (465)
T ss_pred cccceeehHHHHHHHHHHh
Confidence 4577888888888776544
No 18
>PF01864 DUF46: Putative integral membrane protein DUF46; InterPro: IPR002726 This archaebacterial protein has no known function. It contains several predicted transmembrane regions, suggesting it is an integral membrane protein.
Probab=20.96 E-value=1.8e+02 Score=28.38 Aligned_cols=35 Identities=20% Similarity=0.186 Sum_probs=26.8
Q ss_pred ccccccccCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 006390 498 IGPRRIFGDLGYYSSVNWFFFAGAVAPVLVWIAHK 532 (647)
Q Consensus 498 igp~~lf~~g~~y~~~~~~~~iG~~~~i~~~ll~r 532 (647)
.+.+|+||+|+-+....-+.+.|++++++..++.+
T Consensus 38 ~DGrRilGdgKTwrG~i~gvl~g~l~g~i~~~l~~ 72 (175)
T PF01864_consen 38 RDGRRILGDGKTWRGFIGGVLAGTLVGIIQGLLLP 72 (175)
T ss_pred CCCCEecCCCCeEEeeeHHHHHHHHHHHHHHHHhh
Confidence 34589999999998766677788888887776643
Done!