Query 006390
Match_columns 647
No_of_seqs 141 out of 1176
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 23:46:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006390.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006390hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3llq_A Aquaporin Z 2; aquapori 19.1 6.5E+02 0.022 24.6 10.7 18 440-457 113-130 (256)
2 3iyz_A Aquaporin-4; water tran 16.7 8.5E+02 0.029 24.9 11.4 20 434-453 171-190 (340)
3 2k1a_A Integrin alpha-IIB; sin 11.3 2E+02 0.0068 20.3 3.0 19 322-340 5-23 (42)
4 2l8s_A Integrin alpha-1; trans 10.9 4.9E+02 0.017 19.3 5.2 36 190-225 2-37 (54)
5 3h3g_B Parathyroid hormone-rel 10.4 1.8E+02 0.006 18.0 2.1 18 422-448 3-20 (24)
6 2jwa_A Receptor tyrosine-prote 8.8 1.9E+02 0.0064 20.6 2.2 19 565-583 23-41 (44)
7 2l2t_A Receptor tyrosine-prote 7.3 2.5E+02 0.0085 20.0 2.3 16 568-583 25-40 (44)
8 2ks1_B Epidermal growth factor 7.3 3.2E+02 0.011 19.4 2.8 9 525-533 30-38 (44)
9 1iij_A ERBB-2 receptor protein 6.2 1E+02 0.0034 20.9 -0.3 17 565-581 19-35 (35)
10 4g1u_A Hemin transport system 6.0 2E+03 0.067 22.1 16.4 83 422-533 241-323 (357)
No 1
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=19.12 E-value=6.5e+02 Score=24.58 Aligned_cols=18 Identities=39% Similarity=0.409 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006390 440 FMAQVFGTIISALAHLGT 457 (647)
Q Consensus 440 f~aQliG~ivg~~v~~~v 457 (647)
..+|++|.++|+.+...+
T Consensus 113 iiAQ~lGA~~ga~lv~~~ 130 (256)
T 3llq_A 113 VIAQVAGAIVAAAALYVI 130 (256)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 479999999999887654
No 2
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=16.72 E-value=8.5e+02 Score=24.90 Aligned_cols=20 Identities=5% Similarity=0.085 Sum_probs=14.2
Q ss_pred CChHHHHHHHHHHHHHHHHH
Q 006390 434 IPPRAMFMAQVFGTIISALA 453 (647)
Q Consensus 434 ~pPr~~f~aQliG~ivg~~v 453 (647)
.++-..|..|+++|++=.++
T Consensus 171 ~s~~~~f~~E~i~Tf~Lv~~ 190 (340)
T 3iyz_A 171 LTAGHGLLVELIITFQLVFT 190 (340)
T ss_pred cCHHHHHHHHHHHHHHHHHH
Confidence 45667889999998864443
No 3
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=11.28 E-value=2e+02 Score=20.25 Aligned_cols=19 Identities=21% Similarity=0.573 Sum_probs=11.7
Q ss_pred cCCCCchHHHHHHHHHHHH
Q 006390 322 YKQVPEWWFTCILLINIAA 340 (647)
Q Consensus 322 y~~vP~ww~~~~~~~~~~~ 340 (647)
+.++|.|.++...+..+.+
T Consensus 5 ~~~vp~wiIi~s~l~GLll 23 (42)
T 2k1a_A 5 ERAIPIWWVLVGVLGGLLL 23 (42)
T ss_dssp CCCCCHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHH
Confidence 4568888776655544433
No 4
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=10.86 E-value=4.9e+02 Score=19.31 Aligned_cols=36 Identities=19% Similarity=0.294 Sum_probs=21.9
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 006390 190 GSPLASPWFATANIAAGFFLIMYVITPIAYWLNIFK 225 (647)
Q Consensus 190 g~gl~~p~~~~~~~~~G~vi~~~ii~P~~~~~~~~~ 225 (647)
|.|--+|+|..+--.+|.++-..++.-++|.-|.+.
T Consensus 2 ~~~~~vp~WiIi~svl~GLLLL~Lii~~LwK~GFFK 37 (54)
T 2l8s_A 2 GLPGRVPLWVILLSAFAGLLLLMLLILALWKIGFFK 37 (54)
T ss_dssp CCCCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCccCchHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 566678888765544444444555555666667553
No 5
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=10.43 E-value=1.8e+02 Score=17.97 Aligned_cols=18 Identities=33% Similarity=0.689 Sum_probs=13.5
Q ss_pred hhhhchhhhhcCCChHHHHHHHHHHHH
Q 006390 422 FLQDLKLGHYMKIPPRAMFMAQVFGTI 448 (647)
Q Consensus 422 ~~~DlK~G~yl~~pPr~~f~aQliG~i 448 (647)
-+||+| |.+|.-++++.+
T Consensus 3 s~Q~~r---------Rr~wL~~ll~~v 20 (24)
T 3h3g_B 3 SIQDLR---------RRFFLHHLIAEI 20 (26)
T ss_dssp CHHHHH---------HHHHHHHHHHHH
T ss_pred cHHHHH---------HHHHHHHHHHHh
Confidence 368888 888888877653
No 6
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=8.77 E-value=1.9e+02 Score=20.61 Aligned_cols=19 Identities=16% Similarity=0.312 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHhcCcc
Q 006390 565 SWILIGFASGFIAYRYYRD 583 (647)
Q Consensus 565 ~~~~vG~~~~~~~rr~~~~ 583 (647)
..+++++.+..|+|||+-+
T Consensus 23 l~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 23 LVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHhheehhhhh
Confidence 3366777777889998754
No 7
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=7.30 E-value=2.5e+02 Score=19.96 Aligned_cols=16 Identities=13% Similarity=0.195 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhcCcc
Q 006390 568 LIGFASGFIAYRYYRD 583 (647)
Q Consensus 568 ~vG~~~~~~~rr~~~~ 583 (647)
+++....+|+|||+.+
T Consensus 25 ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 25 IVGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHhhhhhhh
Confidence 4455566788887655
No 8
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=7.28 E-value=3.2e+02 Score=19.37 Aligned_cols=9 Identities=0% Similarity=-0.053 Sum_probs=3.8
Q ss_pred HHHHHHHHh
Q 006390 525 VLVWIAHKA 533 (647)
Q Consensus 525 i~~~ll~r~ 533 (647)
...++++|+
T Consensus 30 ~~~~~~RRr 38 (44)
T 2ks1_B 30 GIGLFMRRR 38 (44)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHhhhh
Confidence 334444444
No 9
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=6.21 E-value=1e+02 Score=20.94 Aligned_cols=17 Identities=12% Similarity=0.284 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHhcC
Q 006390 565 SWILIGFASGFIAYRYY 581 (647)
Q Consensus 565 ~~~~vG~~~~~~~rr~~ 581 (647)
..++++..+..|+|||+
T Consensus 19 l~vii~l~~~~~iRRr~ 35 (35)
T 1iij_A 19 LFLILVVVVGILIKRRR 35 (35)
T ss_dssp HHHHHTTTTTHHHHHCC
T ss_pred HHHHHHHHhheEEeecC
Confidence 34566666777888875
No 10
>4g1u_A Hemin transport system permease protein HMUU; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=5.99 E-value=2e+03 Score=22.14 Aligned_cols=83 Identities=14% Similarity=-0.003 Sum_probs=45.6
Q ss_pred hhhhchhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCccccccchhhhhhhhhhhcccc
Q 006390 422 FLQDLKLGHYMKIPPRAMFMAQVFGTIISALAHLGTAWWLMNTIPDICDREMLPSGSPWTCPGDHVFYDASIIWGLIGPR 501 (647)
Q Consensus 422 ~~~DlK~G~yl~~pPr~~f~aQliG~ivg~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~sv~wg~igp~ 501 (647)
+.-|=...+-+|+++|+.-..-++-+.+-+.+++.+ ...+.-+ ..-.|.. . +
T Consensus 241 l~lGe~~A~sLGv~v~~~r~~~l~l~all~a~ava~----vG~I~FV----------GLivPhi-------------a-R 292 (357)
T 4g1u_A 241 LQLGDEEAHYLGVNVRQAKLRLLLLSAILIGAAVAV----SGVIGFI----------GLVVPHL-------------I-R 292 (357)
T ss_dssp GGGCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH----HCCCCST----------TTHHHHH-------------H-H
T ss_pred HcCCHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH----------HHHHHHH-------------H-H
Confidence 344667889999999987665554443333232221 1111111 1122321 0 3
Q ss_pred ccccCCCchhhHHHHHHHHHHHHHHHHHHHHh
Q 006390 502 RIFGDLGYYSSVNWFFFAGAVAPVLVWIAHKA 533 (647)
Q Consensus 502 ~lf~~g~~y~~~~~~~~iG~~~~i~~~ll~r~ 533 (647)
++++++ ....++.+.++|+++-+..-.+.|.
T Consensus 293 ~l~g~~-~~~llp~Sal~Ga~lll~aD~lar~ 323 (357)
T 4g1u_A 293 MRIGAD-HRWLLPGAALGGACLLLTADTLART 323 (357)
T ss_dssp TTSCSC-HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhCCC-cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 445432 2236788999999988887777664
Done!