Query 006390
Match_columns 647
No_of_seqs 141 out of 1176
Neff 7.2
Searched_HMMs 13730
Date Mon Mar 25 23:47:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006390.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006390hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54l_ f.23.6.1 (L:) Mitochon 4.2 2.6E+02 0.019 18.2 2.4 15 70-84 22-36 (46)
2 d1zava1 d.58.62.1 (A:1-177) Ri 3.6 3.7E+02 0.027 22.2 3.8 29 428-456 128-156 (177)
3 d2axtl1 f.23.31.1 (L:1-37) Pho 3.5 3.5E+02 0.026 16.5 2.5 13 357-369 19-31 (37)
4 d1ymga1 f.19.1.1 (A:6-239) Aqu 3.4 1.1E+03 0.082 19.6 9.8 17 441-457 86-102 (234)
5 d1q90m_ f.23.25.1 (M:) PetM su 3.0 4.7E+02 0.034 15.4 2.6 13 594-606 2-14 (34)
6 d2axtj1 f.23.32.1 (J:7-40) Pho 3.0 5.6E+02 0.041 15.4 4.0 26 444-469 6-31 (34)
7 d1zcea1 b.122.1.8 (A:2-147) Hy 3.0 1.7E+02 0.012 24.2 0.7 16 417-432 34-49 (146)
8 d1gvda_ a.4.1.3 (A:) c-Myb, DN 2.9 2.1E+02 0.015 18.9 1.0 18 20-37 1-18 (52)
9 d1qk7a_ g.3.6.2 (A:) Lectin SH 2.9 2.1E+02 0.016 16.8 0.9 11 15-25 22-32 (32)
10 d2evea1 b.122.1.8 (A:2-149) Hy 2.6 2.2E+02 0.016 23.5 1.0 15 417-431 31-45 (148)
No 1
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.19 E-value=2.6e+02 Score=18.24 Aligned_cols=15 Identities=33% Similarity=0.592 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhhc
Q 006390 70 VITTQVLGFGWAGLF 84 (647)
Q Consensus 70 ~ls~~~lG~~~Ag~l 84 (647)
..-+-++|.+||.|+
T Consensus 22 a~m~~~fGsgfa~PF 36 (46)
T d1v54l_ 22 AMMTLFFGSGFAAPF 36 (46)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccchH
Confidence 333567788888764
No 2
>d1zava1 d.58.62.1 (A:1-177) Ribosomal protein L10 {Thermotoga maritima [TaxId: 2336]}
Probab=3.58 E-value=3.7e+02 Score=22.23 Aligned_cols=29 Identities=17% Similarity=0.370 Sum_probs=23.4
Q ss_pred hhhhcCCChHHHHHHHHHHHHHHHHHHHH
Q 006390 428 LGHYMKIPPRAMFMAQVFGTIISALAHLG 456 (647)
Q Consensus 428 ~G~yl~~pPr~~f~aQliG~ivg~~v~~~ 456 (647)
+-.+.+.|.|...++|++|.+-+..-+..
T Consensus 128 i~~la~LPs~eel~a~l~~~L~ap~~~l~ 156 (177)
T d1zava1 128 VENIAKLPSKEELYAMLVGRVKAPITGLV 156 (177)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhHHHHHH
Confidence 44678899999999999999887655543
No 3
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.55 E-value=3.5e+02 Score=16.53 Aligned_cols=13 Identities=62% Similarity=0.927 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 006390 357 WGVLLACVLALFF 369 (647)
Q Consensus 357 ~~~ilal~la~i~ 369 (647)
|++++..+++.+|
T Consensus 19 ~GlLlifvl~vLF 31 (37)
T d2axtl1 19 LGLLLILVLALLF 31 (37)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 4
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.36 E-value=1.1e+03 Score=19.63 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006390 441 MAQVFGTIISALAHLGT 457 (647)
Q Consensus 441 ~aQliG~ivg~~v~~~v 457 (647)
.+|++|.++|+++...+
T Consensus 86 ~aQ~lGa~~ga~l~~~~ 102 (234)
T d1ymga1 86 VAQLLGAVAGAAVLYSV 102 (234)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHHHH
Confidence 79999999999887654
No 5
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.04 E-value=4.7e+02 Score=15.40 Aligned_cols=13 Identities=31% Similarity=0.148 Sum_probs=9.2
Q ss_pred HhHhhhHHHHHHH
Q 006390 594 GALDAGLAFMGVL 606 (647)
Q Consensus 594 agL~aG~ai~gii 606 (647)
+++++|+++..+-
T Consensus 2 a~fiagta~tmig 14 (34)
T d1q90m_ 2 AEFIAGTALTMVG 14 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CceecchhHHHHH
Confidence 6788888876443
No 6
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.03 E-value=5.6e+02 Score=15.37 Aligned_cols=26 Identities=4% Similarity=0.075 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCC
Q 006390 444 VFGTIISALAHLGTAWWLMNTIPDIC 469 (647)
Q Consensus 444 liG~ivg~~v~~~v~~~~~~~~~~~~ 469 (647)
++|++.|..+...+=.+++.++.+..
T Consensus 6 lv~tv~G~~vi~~vG~FfYGsYsGlG 31 (34)
T d2axtj1 6 IVATVAGMGVIVIVGLFFYGAYAGLG 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSTT
T ss_pred EeeehhhhhhHhheeeeeeeeecccc
Confidence 56777776665544445666666543
No 7
>d1zcea1 b.122.1.8 (A:2-147) Hypothetical protein Atu2648 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=3.00 E-value=1.7e+02 Score=24.24 Aligned_cols=16 Identities=19% Similarity=0.216 Sum_probs=14.2
Q ss_pred Hhhhhhhhhchhhhhc
Q 006390 417 KQGITFLQDLKLGHYM 432 (647)
Q Consensus 417 ~qA~~~~~DlK~G~yl 432 (647)
.||-+++.|+|.|.+.
T Consensus 34 yqArn~lr~Mk~GD~~ 49 (146)
T d1zcea1 34 YQARNNMRAMKIGDKG 49 (146)
T ss_dssp HHHHHHHHTCCTTCEE
T ss_pred HHHHHHHHhccCCCEE
Confidence 6999999999999764
No 8
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.93 E-value=2.1e+02 Score=18.90 Aligned_cols=18 Identities=17% Similarity=0.336 Sum_probs=10.2
Q ss_pred ecCCCCCcchhHHHhHhh
Q 006390 20 FNPGPFHVKEHVLITIFA 37 (647)
Q Consensus 20 lnPgpf~~kE~~~i~~~a 37 (647)
|+-||||..|...+.-..
T Consensus 1 l~rg~WT~eED~~L~~~v 18 (52)
T d1gvda_ 1 LIKGPWTKEEDQRLIKLV 18 (52)
T ss_dssp CCCCSCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHH
Confidence 345677777765554433
No 9
>d1qk7a_ g.3.6.2 (A:) Lectin SHL-I {Chinese bird spider (Selenocosmia huwena) [TaxId: 29017]}
Probab=2.88 E-value=2.1e+02 Score=16.77 Aligned_cols=11 Identities=18% Similarity=0.694 Sum_probs=8.1
Q ss_pred ceeEeecCCCC
Q 006390 15 RFEFTFNPGPF 25 (647)
Q Consensus 15 ~~~~~lnPgpf 25 (647)
.|+|-..||||
T Consensus 22 twkwcv~~gpw 32 (32)
T d1qk7a_ 22 TWKWCVLAGPW 32 (32)
T ss_dssp SSCBEEECCCC
T ss_pred ceeeeeccCCC
Confidence 46666779997
No 10
>d2evea1 b.122.1.8 (A:2-149) Hypothetical protein PSPTO5229 {Pseudomonas syringae [TaxId: 317]}
Probab=2.61 E-value=2.2e+02 Score=23.54 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=13.4
Q ss_pred Hhhhhhhhhchhhhh
Q 006390 417 KQGITFLQDLKLGHY 431 (647)
Q Consensus 417 ~qA~~~~~DlK~G~y 431 (647)
.||.++|.|+|.|-.
T Consensus 31 yqArn~lr~M~~GD~ 45 (148)
T d2evea1 31 YQARNFLRTMAEGDE 45 (148)
T ss_dssp HHHHHHHHHCCTTCE
T ss_pred HHHHHHHHhcccCCE
Confidence 599999999999965
Done!