Query 006391
Match_columns 647
No_of_seqs 335 out of 625
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 22:36:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006391.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006391hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00188 enhanced disease resi 100.0 1E-156 2E-161 1306.5 55.0 606 1-646 76-713 (719)
2 PF07059 DUF1336: Protein of u 100.0 1.3E-75 2.8E-80 591.3 19.9 207 432-638 1-227 (227)
3 cd08904 START_STARD6-like Lipi 100.0 4E-36 8.7E-41 299.9 22.6 183 112-308 20-202 (204)
4 cd08914 START_STARD15-like Lip 100.0 2.8E-35 6.1E-40 298.2 20.6 179 83-280 26-208 (236)
5 cd08873 START_STARD14_15-like 100.0 8.8E-35 1.9E-39 295.0 21.4 179 81-277 23-205 (235)
6 cd08913 START_STARD14-like Lip 100.0 2.5E-34 5.3E-39 293.2 19.9 180 83-280 29-212 (240)
7 cd08907 START_STARD8-like C-te 100.0 3.3E-34 7.2E-39 283.2 17.4 177 113-311 26-204 (205)
8 cd08909 START_STARD13-like C-t 100.0 6.8E-34 1.5E-38 283.6 19.6 177 114-311 27-204 (205)
9 cd08868 START_STARD1_3_like Ch 100.0 1.4E-32 3.1E-37 274.2 24.7 186 110-311 20-207 (208)
10 cd08869 START_RhoGAP C-termina 100.0 1.1E-32 2.4E-37 273.6 22.4 177 113-311 18-196 (197)
11 cd08902 START_STARD4-like Lipi 100.0 1.3E-32 2.8E-37 271.4 19.9 182 111-309 20-201 (202)
12 cd08906 START_STARD3-like Chol 100.0 4.1E-32 9E-37 272.1 21.1 188 108-311 19-208 (209)
13 cd08867 START_STARD4_5_6-like 100.0 1.3E-31 2.7E-36 267.0 23.0 183 113-309 21-205 (206)
14 cd08903 START_STARD5-like Lipi 100.0 5.5E-31 1.2E-35 263.6 22.9 187 112-311 20-207 (208)
15 cd08874 START_STARD9-like C-te 100.0 8.8E-31 1.9E-35 261.8 20.9 193 102-311 8-205 (205)
16 cd08871 START_STARD10-like Lip 100.0 2.3E-29 4.9E-34 253.5 21.2 188 108-312 17-210 (222)
17 smart00234 START in StAR and p 100.0 8.6E-29 1.9E-33 244.4 22.9 185 108-309 13-200 (206)
18 cd08905 START_STARD1-like Chol 100.0 5.4E-29 1.2E-33 249.5 19.5 184 112-311 23-208 (209)
19 cd08908 START_STARD12-like C-t 100.0 8.4E-29 1.8E-33 247.1 18.4 176 114-311 27-203 (204)
20 cd08872 START_STARD11-like Cer 100.0 7.2E-28 1.6E-32 245.6 18.9 189 113-312 25-227 (235)
21 PF01852 START: START domain; 100.0 2.8E-27 6E-32 233.1 22.3 188 110-313 15-204 (206)
22 cd08911 START_STARD7-like Lipi 99.9 6E-27 1.3E-31 234.3 20.0 180 112-307 19-202 (207)
23 cd00177 START Lipid-binding ST 99.9 1.9E-25 4.1E-30 215.4 22.5 154 114-280 15-168 (193)
24 cd08910 START_STARD2-like Lipi 99.9 7.4E-26 1.6E-30 226.6 16.8 175 112-307 23-202 (207)
25 cd08876 START_1 Uncharacterize 99.9 6E-25 1.3E-29 215.8 21.1 179 110-308 13-193 (195)
26 cd08870 START_STARD2_7-like Li 99.9 2.4E-24 5.3E-29 215.5 20.3 178 114-309 22-206 (209)
27 cd08877 START_2 Uncharacterize 99.9 2.5E-22 5.4E-27 201.5 16.5 182 107-304 15-210 (215)
28 KOG2761 START domain-containin 99.8 5.3E-20 1.2E-24 183.1 17.5 162 110-281 25-189 (219)
29 cd08875 START_ArGLABRA2_like C 99.6 1.1E-13 2.3E-18 140.5 16.7 134 137-280 57-200 (229)
30 KOG1739 Serine/threonine prote 99.5 2.6E-14 5.7E-19 154.1 8.2 167 109-280 398-576 (611)
31 cd08864 SRPBCC_DUF3074 DUF3074 99.1 9.5E-10 2.1E-14 110.8 14.2 132 167-310 65-207 (208)
32 KOG2200 Tumour suppressor prot 98.1 7.7E-07 1.7E-11 99.4 0.5 92 202-313 575-666 (674)
33 PF11274 DUF3074: Protein of u 98.1 0.00013 2.7E-09 72.6 15.5 147 149-305 13-180 (184)
34 cd07813 COQ10p_like Coenzyme Q 98.0 6.9E-05 1.5E-09 69.4 11.9 110 143-280 2-111 (138)
35 cd08866 SRPBCC_11 Ligand-bindi 97.9 0.00023 4.9E-09 66.0 13.7 142 143-310 2-143 (144)
36 cd07819 SRPBCC_2 Ligand-bindin 97.5 0.0021 4.6E-08 58.6 13.7 134 142-308 4-139 (140)
37 cd05018 CoxG Carbon monoxide d 97.2 0.0053 1.1E-07 56.2 12.2 114 142-280 3-116 (144)
38 cd08861 OtcD1_ARO-CYC_like N-t 97.0 0.01 2.3E-07 54.7 12.3 110 144-280 3-114 (142)
39 cd08860 TcmN_ARO-CYC_like N-te 96.9 0.022 4.8E-07 54.4 13.5 137 144-311 5-144 (146)
40 cd07817 SRPBCC_8 Ligand-bindin 96.8 0.038 8.2E-07 50.3 14.1 108 142-280 2-109 (139)
41 PF10604 Polyketide_cyc2: Poly 96.6 0.17 3.6E-06 45.8 16.7 135 142-309 4-138 (139)
42 cd07821 PYR_PYL_RCAR_like Pyra 96.6 0.068 1.5E-06 48.3 14.0 137 142-309 3-139 (140)
43 PRK10724 hypothetical protein; 96.0 0.18 4E-06 48.9 13.8 113 140-280 15-127 (158)
44 PF03364 Polyketide_cyc: Polyk 95.9 0.11 2.4E-06 47.2 11.3 109 148-280 1-109 (130)
45 cd07812 SRPBCC START/RHO_alpha 94.7 1.3 2.8E-05 38.4 13.9 111 143-280 2-114 (141)
46 KOG3845 MLN, STAR and related 94.4 0.0022 4.8E-08 66.4 -5.1 156 116-280 27-182 (241)
47 cd08865 SRPBCC_10 Ligand-bindi 94.4 0.96 2.1E-05 40.6 12.7 36 144-181 3-38 (140)
48 cd08862 SRPBCC_Smu440-like Lig 92.7 5.1 0.00011 36.2 14.4 40 142-183 3-42 (138)
49 cd07823 SRPBCC_5 Ligand-bindin 92.6 2.5 5.5E-05 39.5 12.7 39 144-187 3-41 (146)
50 cd07824 SRPBCC_6 Ligand-bindin 91.2 6.7 0.00014 36.6 13.8 37 143-181 4-40 (146)
51 cd07822 SRPBCC_4 Ligand-bindin 90.9 9.1 0.0002 34.3 14.1 36 142-179 2-37 (141)
52 cd07818 SRPBCC_1 Ligand-bindin 90.4 7.2 0.00016 36.1 13.2 38 142-181 4-41 (150)
53 cd01220 PH_CDEP Chondrocyte-de 87.7 0.58 1.3E-05 42.1 3.5 26 10-35 73-98 (99)
54 cd00900 PH-like Pleckstrin hom 84.6 0.81 1.8E-05 37.8 2.7 32 2-33 68-99 (99)
55 cd07825 SRPBCC_7 Ligand-bindin 82.8 38 0.00082 30.9 15.4 30 142-173 2-31 (144)
56 PF06240 COXG: Carbon monoxide 82.5 38 0.00082 31.7 13.4 111 145-280 2-112 (140)
57 cd07816 Bet_v1-like Ligand-bin 82.4 44 0.00096 31.7 13.9 119 142-279 3-122 (148)
58 cd01246 PH_oxysterol_bp Oxyste 79.0 1.8 4E-05 36.6 2.9 24 10-33 68-91 (91)
59 PF00169 PH: PH domain; Inter 69.4 4.7 0.0001 34.0 3.0 25 10-34 79-103 (104)
60 cd01256 PH_dynamin Dynamin ple 68.9 4.1 8.8E-05 37.1 2.6 33 1-33 67-104 (110)
61 cd01235 PH_SETbf Set binding f 68.6 4.4 9.5E-05 35.4 2.8 26 9-34 76-101 (101)
62 smart00233 PH Pleckstrin homol 68.1 5.3 0.00012 32.8 3.1 24 11-34 78-101 (102)
63 COG5637 Predicted integral mem 67.9 1E+02 0.0022 31.2 12.1 133 142-311 72-210 (217)
64 cd01251 PH_centaurin_alpha Cen 67.8 5.3 0.00011 35.9 3.2 26 10-35 76-101 (103)
65 cd01218 PH_phafin2 Phafin2 Pl 67.3 6.7 0.00015 35.7 3.7 28 10-37 74-101 (104)
66 COG2867 Oligoketide cyclase/li 65.6 64 0.0014 31.4 10.1 109 141-280 3-115 (146)
67 cd01219 PH_FGD FGD (faciogenit 63.2 7.1 0.00015 34.9 3.1 25 11-35 76-100 (101)
68 TIGR01599 PYST-A Plasmodium yo 62.6 1.3E+02 0.0029 30.9 12.3 113 140-257 59-201 (208)
69 cd07814 SRPBCC_CalC_Aha1-like 59.2 1.3E+02 0.0029 26.8 13.8 30 142-173 2-31 (139)
70 cd01260 PH_CNK Connector enhan 58.3 8.6 0.00019 33.5 2.6 23 11-33 74-96 (96)
71 cd01222 PH_clg Clg (common-sit 58.1 12 0.00026 33.7 3.6 27 9-35 70-96 (97)
72 cd01252 PH_cytohesin Cytohesin 57.4 13 0.00028 34.3 3.8 24 12-35 91-114 (125)
73 cd07820 SRPBCC_3 Ligand-bindin 54.8 15 0.00032 33.9 3.8 38 144-183 3-40 (137)
74 cd01250 PH_centaurin Centaurin 50.0 13 0.00028 31.5 2.4 25 9-33 70-94 (94)
75 cd00821 PH Pleckstrin homology 47.8 16 0.00034 29.7 2.5 23 11-33 74-96 (96)
76 COG3427 Carbon monoxide dehydr 46.1 2.3E+02 0.005 27.6 10.4 41 143-188 4-44 (146)
77 cd01223 PH_Vav Vav pleckstrin 42.9 30 0.00064 32.4 3.7 25 11-35 88-112 (116)
78 cd01265 PH_PARIS-1 PARIS-1 ple 41.6 27 0.00059 30.8 3.2 25 9-33 69-93 (95)
79 cd01233 Unc104 Unc-104 pleckst 37.4 36 0.00078 30.2 3.3 26 9-34 73-98 (100)
80 cd08893 SRPBCC_CalC_Aha1-like_ 32.0 42 0.00091 30.1 2.9 30 142-173 2-31 (136)
81 cd08899 SRPBCC_CalC_Aha1-like_ 29.0 44 0.00095 31.8 2.6 31 140-172 11-41 (157)
82 cd01244 PH_RasGAP_CG9209 RAS_G 27.8 48 0.001 29.8 2.5 24 10-33 75-98 (98)
83 COG3832 Uncharacterized conser 27.3 5.4E+02 0.012 24.4 10.3 32 139-172 7-38 (149)
84 cd08898 SRPBCC_CalC_Aha1-like_ 27.0 59 0.0013 29.5 3.0 30 142-173 3-32 (145)
85 cd01241 PH_Akt Akt pleckstrin 26.9 48 0.001 29.6 2.3 20 14-33 82-101 (102)
86 cd01264 PH_melted Melted pleck 25.0 71 0.0015 29.0 3.0 26 8-33 75-100 (101)
87 cd01247 PH_GPBP Goodpasture an 22.7 82 0.0018 27.6 2.9 23 10-32 68-90 (91)
88 cd01245 PH_RasGAP_CG5898 RAS G 20.5 88 0.0019 28.2 2.7 20 13-32 78-97 (98)
89 cd01230 PH_EFA6 EFA6 Pleckstri 20.5 1.2E+02 0.0026 28.2 3.7 26 10-35 87-112 (117)
No 1
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=100.00 E-value=1e-156 Score=1306.53 Aligned_cols=606 Identities=32% Similarity=0.563 Sum_probs=530.9
Q ss_pred CeeecCCCCCcceeecccCHHHHHHHHHHHHHHHHHHHHHHhcCC-------------CCCccccccccc-------ccc
Q 006391 1 MRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQQAEVELSRGG-------------SARNKLNMETEI-------NLD 60 (647)
Q Consensus 1 ~~~yn~~~~~~~~~~~~~~~eea~~w~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~-------~~~ 60 (647)
|+|||+++|++||+|||+|+|||++||+||++|++|+.......+ .+++.++++++. +.+
T Consensus 76 l~~Yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 155 (719)
T PLN00188 76 LSVYNKKEKYHRITMAAFNIQEALIWKEKIESVIDQHQDSQVPNGNKYASFEYKSGMDNGRTASSSDHESQFSAQEDEED 155 (719)
T ss_pred EEEecCCCccccEEEecCCHHHHHHHHHHHHHHHhhhccccccccccccceeeccccccccccccccccccccccccccc
Confidence 799999999999999999999999999999999998744333222 223334444432 234
Q ss_pred CCCcccccccccceEEEEecCCCCCcccCCCCCCCCccCCCcCCCcccccccCCCCEEEEEeCCeEEEEEecCCC---CC
Q 006391 61 GHRPRVRRYAHGLRKLIRIGHGPETLLRQSSDLGGSVRGEGFFEGDIGDAIEAHEWKCVRTLNGVRIFEDVADSK---SG 137 (647)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~~~~ls~~n~~~~~~a~sgW~l~~~kngVrVf~~~~~~~---~~ 137 (647)
++++ +.|++||||||+.+.++||.+... +++|+++++++++.+.|++++|+||+|||++..+.. ..
T Consensus 156 ~~~~--------~~r~~tig~gp~~s~~~~t~~~~~---~~~~~~~~~d~~~~~~Wr~~~c~NGlRiF~e~~~~~~~~~~ 224 (719)
T PLN00188 156 THRD--------LLRRTTIGNGPPDSVLDWTKEFDS---ELSNQNSNNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRS 224 (719)
T ss_pred cCcc--------cceeeeccCCCcchhcccccccCc---cccccCCCccccccCCeEEEEeeccceeehhhhcccccccc
Confidence 4554 778889999999999999996666 788999999999999999999999999999988764 56
Q ss_pred cccEEEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceeEEEEEecCCCCCCCCCCCeEEEEEEEEEc
Q 006391 138 RGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRG 217 (647)
Q Consensus 138 ~~~~~Ka~~vVdaspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE~iD~~tDIvY~~~~p~~lp~~vs~RDFV~LRswRr~ 217 (647)
++++||++|+|+++|++||+.||+++. .|.+||.++.++++||+||+||||+|.++++.|+|+.++|||||++|+|+++
T Consensus 225 ~~~~mKavGVV~aspE~Ifd~Vm~~~~-~R~eWD~~~~~~~vIE~ID~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~ 303 (719)
T PLN00188 225 CSRAMKAVGVVEATCEEIFELVMSMDG-TRFEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRN 303 (719)
T ss_pred CCceeEEEEEecCCHHHHHHHHhccCc-ccccchhcccceEEEEEecCCeEEEEEEeccccccCccCcceeEEEEEEEEc
Confidence 679999999999999999999999987 7999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCccEEEEEEEEcCCCccccccCcccceehhhHHH
Q 006391 218 QDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFA 297 (647)
Q Consensus 218 ~dGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~~~VT~I~qvDlkGw~~w~p~~~~~~~~~~~~~ 297 (647)
+||+|+|+++||+||+|||++|||||++++|||+|.|++++ +++++|+|+|++|+|+|||+ ++|+++++++++++
T Consensus 304 eDGsYvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL~~~--~g~~r~lv~~~lqtDlkGW~---~~y~~s~~~~~~l~ 378 (719)
T PLN00188 304 DDGSYVVLFRSREHENCGPQPGFVRAHLESGGFNISPLKPR--NGRPRTQVQHLMQIDLKGWG---VGYIPSFQQHCLLQ 378 (719)
T ss_pred CCCcEEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEECCCC--CCCCceEEEEEEEEccCccc---cccCccccccchHH
Confidence 99999999999999999999999999999999999999873 45689999999999999999 89999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCccceeeeccccccCCCCCC--------ccchhhhhhhhcccccCCCCCCCCCCCCCCC-
Q 006391 298 LLSQVAGLKEYIGANPALKNESATVVVHSKFSDVSSSNGY--------YEDVEVQEQFYDAIAADSSSSEDEDSDDSND- 368 (647)
Q Consensus 298 mL~~va~LRe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~- 368 (647)
||++||+|||||+++++.++.+|++++.+|+....+++.+ ..+.+..++|+++... +++|+|++
T Consensus 379 mL~~VAgLrE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~dE~~ 451 (719)
T PLN00188 379 MLNSVAGLREWFSQTDERGAPPRIPVMVNMASASVSSKKNQKPQESSPSLDQTNAASRNSVMMD-------EDSDDDEEF 451 (719)
T ss_pred HHHHHHHHHHHHhcCcccCccccceeecccccccccccccccccccccccccccccchhhhhhc-------cccccchhc
Confidence 9999999999999999999999999999887653222111 1122334566655433 33333332
Q ss_pred CCchhhhhhhccchhhhhhhhhcccCCCCCCcccCCCCCCcccCCCccccccccCCCCCCCCcccCCCCCceeecCCCcc
Q 006391 369 PDKKDKKVKLKNVSWAIASLALKRTSVPDANKEFDCSVPPITIDPSQFRGSLHKAKDETDSNCWTSPGGKGFMIRGKTYL 448 (647)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~Ws~p~~~~F~VRg~~Yl 448 (647)
++++..++..+.++ .. ......+.+++.+|+++|+|+|++++++++.+||++|++++|+|||+|||
T Consensus 452 ~~~e~~~~~~~~k~-------------~~-~~~~~~~~~~~~~d~~~~~g~l~~~~~~~~~ncWs~Pd~~~F~VRG~~Yl 517 (719)
T PLN00188 452 QIPESEQEPETTKN-------------ET-KDTAMEEEPQDKIDLSCFSGNLRRDDRDKARDCWRISDGNNFKVRSKNFC 517 (719)
T ss_pred cCCCcccccccccc-------------cc-cccccccCCcccccccccccccccCCCCCCCCCccCCCCcceEEcCCCcc
Confidence 33332222111111 00 11223567899999999999999999999999999999999999999999
Q ss_pred ccCccccCCCCcceEeEEeEeeeCCcccccccCCCcccccccCCCCCeEEEEEEEcCCCCCceEEEEEeecCCCCchhhH
Q 006391 449 KDNAKVMGGDPLLKLIAVDWFKVDKAADRVALHPKCLVQSEAGKKLPFILVINLQVPGKPNYSLVLYYASERPVNKNSLL 528 (647)
Q Consensus 449 ~dk~Kvpa~~~l~~lv~vD~f~s~~~~~~ia~~~~~~~~~~~~~~~P~~~ivN~qvP~~p~~s~v~Yf~~~~~~~~~~ll 528 (647)
+||+|+||+++||+|+|||||++++|+||||+||++++|.+.++ .||+|||||||||+|+||+|+||++ +++.+++||
T Consensus 518 ~Dk~KvPAg~~l~~lvgvDwfks~~ridhVa~r~~~~vq~a~~k-~~F~fiVNlQvPg~~~ys~V~Yf~~-~~l~~~sLl 595 (719)
T PLN00188 518 YDKSKIPAGKHLMDLVAVDWFKDTKRMDHVARRKGCAAQVAAEK-GLFSFVVNLQVPGSTHYSMVFYFVT-KELVPGSLL 595 (719)
T ss_pred cCCccccCCccceeeEEEEEEcCCchhhHhhcCCCchhhhhccc-CCcEEEEEEEccCCCceEEEEEEec-cCCCCchHH
Confidence 99999999999999999999999999999999999999986444 5899999999999999999999998 668899999
Q ss_pred hhhhcCCccccccceEEeeeecccceeeeeccCCceeEecceeeeEEeecCCeEEEEEEecChHHHHHHHHHhhcccceE
Q 006391 529 GKFVDGTDMFRDARFKLIPSIAEGYWMVKRAVGTKACLLGKAVTCRYLRQDNFLEIDVDIGSSSVARSVIGLVLGHVTNL 608 (647)
Q Consensus 529 ~rf~~gdd~fRn~RfKlIp~v~~g~wivk~avg~kP~L~gk~~~~~y~~g~~ylEiDvDi~ss~vAr~~~~l~~g~~~~l 608 (647)
+||++|||+|||+||||||+|++|||||||+||+|||||||+++|+||+|+||||||||||||+||++|++||+||+++|
T Consensus 596 ~rF~~GDD~fRnsRfKLIP~Iv~GpWiVk~aVG~~p~llGk~l~~~Y~~g~nylEvdvDi~ss~va~~v~~l~~g~~~~l 675 (719)
T PLN00188 596 QRFVDGDDEFRNSRLKLIPSVPKGSWIVRQSVGSTPCLLGKAVDCNYIRGPKYLEIDVDIGSSTVANGVLGLVIGVITTL 675 (719)
T ss_pred HHhccCchhHhhCceEEeccccCCceEEEeccCCcceEeeeecceeEecCCCeEEEEEeeccHHHHHHHHHHHHhhhhhe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeecCCccccccceeceEEeCccCCCCCccCC
Q 006391 609 VVDLAILIEAKEEEELPEYILGTVQLNRVRLDAAVPLE 646 (647)
Q Consensus 609 vvD~gf~Ieg~~~eELPE~lLG~~Rl~~~d~~~A~~~~ 646 (647)
||||||+|||+++|||||+|||||||++||+++|+..+
T Consensus 676 vvD~af~ie~~~~eELPE~llG~~Rl~~i~~~~A~~~~ 713 (719)
T PLN00188 676 VVDMAFLVQANTYEELPERLIGAVRVSHVELSSAIVPK 713 (719)
T ss_pred EEEEEEEEecCChhhCchhheeeEEecccchhhccccC
Confidence 99999999999999999999999999999999998764
No 2
>PF07059 DUF1336: Protein of unknown function (DUF1336); InterPro: IPR009769 This entry represents the C terminus (approximately 250 residues) of a number of hypothetical plant proteins of unknown function.
Probab=100.00 E-value=1.3e-75 Score=591.34 Aligned_cols=207 Identities=49% Similarity=0.877 Sum_probs=202.7
Q ss_pred ccCCCCCceeecCCCccccCccccCCCCcceEeEEeEeeeCCcccccccCCCcccccccCCCCCeEEEEEEEcCC-----
Q 006391 432 WTSPGGKGFMIRGKTYLKDNAKVMGGDPLLKLIAVDWFKVDKAADRVALHPKCLVQSEAGKKLPFILVINLQVPG----- 506 (647)
Q Consensus 432 Ws~p~~~~F~VRg~~Yl~dk~Kvpa~~~l~~lv~vD~f~s~~~~~~ia~~~~~~~~~~~~~~~P~~~ivN~qvP~----- 506 (647)
||+|++++|+|||+|||+||+|+||+++||+|+|||||++++|++|||+|+.++.+...+.+.||+||||||||+
T Consensus 1 Ws~p~~~~FkVRG~~Yl~DkkKvpa~~~l~~lvgvDlf~s~~~~~hia~~~~~~~~~~~~~~~P~~fIVNlqvP~~p~~~ 80 (227)
T PF07059_consen 1 WSEPDASTFKVRGPNYLKDKKKVPAGPPLFELVGVDLFKSDKKIDHIARRPSSPVQKALEKGVPFTFIVNLQVPGYPPSM 80 (227)
T ss_pred CCCCCCCEEEEeCCCcccCCCCCcCCCcceeeEEEEEEecCCcchhhhhCcCCccccccccCCCcEEEEEEEccCCcccc
Confidence 999999999999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred -----CCCceEEEEEeecCCCCc------hhhHhhhhcCC---ccccccceEEeeeecccceeeeecc-CCceeEeccee
Q 006391 507 -----KPNYSLVLYYASERPVNK------NSLLGKFVDGT---DMFRDARFKLIPSIAEGYWMVKRAV-GTKACLLGKAV 571 (647)
Q Consensus 507 -----~p~~s~v~Yf~~~~~~~~------~~ll~rf~~gd---d~fRn~RfKlIp~v~~g~wivk~av-g~kP~L~gk~~ 571 (647)
.|+||+|+||++++++.. .+||+||++|| |+|||+||||||+|+||||+||++| |+||||||+++
T Consensus 81 f~~~~~~~~s~V~Yf~~~~~~~~~~~~~~~~ll~rF~~gd~~~d~frn~RfKlIp~vv~gpwivr~~v~~~kP~lig~~~ 160 (227)
T PF07059_consen 81 FGEIDGPGYSLVLYFRMPEPIEDDDSPPFGRLLHRFLNGDEVEDAFRNERFKLIPRVVNGPWIVRKAVYNGKPVLIGKKL 160 (227)
T ss_pred ccccccCCceEEEEEecCCccccccCchhHHHHHHHHhcCccchhhhhccEEEEEEEcCCchhhhhhhcCCCceeecCcc
Confidence 999999999999887765 79999999999 9999999999999999999999999 99999999999
Q ss_pred eeEEeecCCeEEEEEEecChHHHHHHHHHhhcccceEEEEEEEEeecCCccccccceeceEEeCccC
Q 006391 572 TCRYLRQDNFLEIDVDIGSSSVARSVIGLVLGHVTNLVVDLAILIEAKEEEELPEYILGTVQLNRVR 638 (647)
Q Consensus 572 ~~~y~~g~~ylEiDvDi~ss~vAr~~~~l~~g~~~~lvvD~gf~Ieg~~~eELPE~lLG~~Rl~~~d 638 (647)
+|+||+|+||||||||||||++||+++++|+||+++|||||||+|||+++|||||+||||+||+|||
T Consensus 161 ~~~y~~g~~y~E~dvdi~ss~~a~~~~~~~~~~~~~lvvd~gf~ieg~~~~ELPE~lLg~~Rl~~id 227 (227)
T PF07059_consen 161 QHRYFRGPNYLEIDVDIHSSYIARKVLHLVRGYLKKLVVDMGFVIEGQTEEELPERLLGCVRLNHID 227 (227)
T ss_pred ceEEeeCCCeEEEEEEeccHHHHHHHHHHHHhhhceEEEEEEEEecCCChhhCchheEeEEEeeecC
Confidence 9999999999999999999999999999999999999999999999999999999999999999997
No 3
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=100.00 E-value=4e-36 Score=299.87 Aligned_cols=183 Identities=19% Similarity=0.210 Sum_probs=163.7
Q ss_pred cCCCCEEEEEeCCeEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceeEEE
Q 006391 112 EAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVY 191 (647)
Q Consensus 112 a~sgW~l~~~kngVrVf~~~~~~~~~~~~~~Ka~~vVdaspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE~iD~~tDIvY 191 (647)
.++||++.+.++|+.||++... ...+.++|++|+|+++|++||+.+.+.+. |.+||+++.++++||+||+||+|+|
T Consensus 20 ~~~gWk~~k~~~~~~v~~k~~~--~~~gkl~k~egvi~~~~e~v~~~l~~~e~--r~~Wd~~~~~~~iie~Id~~T~I~~ 95 (204)
T cd08904 20 DTSGWKVVKTSKKITVSWKPSR--KYHGNLYRVEGIIPESPAKLIQFMYQPEH--RIKWDKSLQVYKMLQRIDSDTFICH 95 (204)
T ss_pred cccCCeEEecCCceEEEEEEcC--CCCceEEEEEEEecCCHHHHHHHHhccch--hhhhcccccceeeEEEeCCCcEEEE
Confidence 3589999999999999998652 23568999999999999999999998654 9999999999999999999999999
Q ss_pred EEecCCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCccEEEEE
Q 006391 192 GTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQM 271 (647)
Q Consensus 192 ~~~~p~~lp~~vs~RDFV~LRswRr~~dGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~~~VT~I 271 (647)
+++++.. .+.++|||||.+|+|++.++|.|++++.||+||+|||++|||||+++++||+|+|+++ ++++|++||+
T Consensus 96 ~~~~~~~-~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~----~p~~t~l~~~ 170 (204)
T cd08904 96 TITQSFA-MGSISPRDFVDLVHIKRYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPE----NPAYSKLVMF 170 (204)
T ss_pred Eeccccc-CCcccCceEEEEEEEEEeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCC----CCCceEEEEE
Confidence 9988742 2469999999999999977789999999999999999999999999999999999987 4578999999
Q ss_pred EEEcCCCccccccCcccceehhhHHHHHHHHHHHHHH
Q 006391 272 LEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEY 308 (647)
Q Consensus 272 ~qvDlkGw~~w~p~~~~~~~~~~~~~mL~~va~LRe~ 308 (647)
+|+|+|||+ |+ +.+++.|...|++++..|++=
T Consensus 171 ~~~DlkG~l---P~--~vv~~~~~~~~~~f~~~~~~~ 202 (204)
T cd08904 171 VQPELRGNL---SR--SVIEKTMPTNLVNLILDAKDG 202 (204)
T ss_pred EEeCCCCCC---CH--HHHHHHhHHHHHHHHHHHHHh
Confidence 999999999 76 445678888899999999863
No 4
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=100.00 E-value=2.8e-35 Score=298.19 Aligned_cols=179 Identities=15% Similarity=0.175 Sum_probs=162.8
Q ss_pred CCCcccCCCCCCCCccCCCcCCCcc--cccccCCCCEEEEEeCCeEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHH
Q 006391 83 PETLLRQSSDLGGSVRGEGFFEGDI--GDAIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVL 160 (647)
Q Consensus 83 ~~~~~~~w~~~~~~~~~~ls~~n~~--~~~~a~sgW~l~~~kngVrVf~~~~~~~~~~~~~~Ka~~vVdaspe~Vfe~L~ 160 (647)
-..+|+|||++||+ ||||+|++ +.+++..||++...++||+||+++. +.-+.+|+++++++|++++|++|.
T Consensus 26 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~a~~~~W~l~~dkdgIkVytr~~----s~~l~fk~e~~vdvs~~~l~~LL~ 98 (236)
T cd08914 26 EVPLCIHWDIGNQA---SLSDSNVEALKKLAAKSGWEVTSTVEKIKIYTLEE----HDVLSVWVEKHVKRPAHLAYRLLS 98 (236)
T ss_pred cCceecccCCCceE---EEeeCCHHHhhhhcccCCCEEEEccCCEEEEEecC----CCcEEEEEEEEEcCCHHHHHHHHh
Confidence 45699999999999 89999965 8899999999999999999999952 233789999999999999999999
Q ss_pred ccCCcccccccCCCCceEEEEeecCceeEEEEEecCCCCCCCCCCCeEEEEEEEEEcC-CCe-EEEEEeeccCCCCCCCC
Q 006391 161 NLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQ-DGT-YTILQFPAVHKKRPPKS 238 (647)
Q Consensus 161 d~~~~~R~~WD~~~~~~evVE~iD~~tDIvY~~~~p~~lp~~vs~RDFV~LRswRr~~-dGs-YvIa~~SV~Hp~~Pp~~ 238 (647)
|.+. |++||.++.++++|+++|++.+ +|++.+|.| .++++||||++++|++.. +|. |+|..+||.||.+||.+
T Consensus 99 D~~~--r~~Wd~~~~e~~vI~qld~~~~-vY~~~~pPw--~Pvk~RD~V~~~s~~~~~~dg~~~~I~~~SVp~~~~Pp~k 173 (236)
T cd08914 99 DFTK--RPLWDPHFLSCEVIDWVSEDDQ-IYHITCPIV--NNDKPKDLVVLVSRRKPLKDGNTYVVAVKSVILPSVPPSP 173 (236)
T ss_pred Chhh--hchhHHhhceEEEEEEeCCCcC-EEEEecCCC--CCCCCceEEEEEEEEecCCCCCEEEEEEeecccccCCCCC
Confidence 9987 9999999999999999999988 677777654 268999999999998764 775 99999999999999999
Q ss_pred CeeeEEEcceeEEEEecCCCCCCCCCccEEEEEEEEcCCCcc
Q 006391 239 GYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 280 (647)
Q Consensus 239 G~VRAei~~sGylI~P~~~~~~~~~~~~~VT~I~qvDlkGw~ 280 (647)
||||++.+++||+|+|+++ ++|+|||++|+|| ||+
T Consensus 174 g~VRv~~~~~G~~I~pl~~------~~~~VtY~~~~dP-g~l 208 (236)
T cd08914 174 QYIRSEIICAGFLIHAIDS------NSCTVSYFNQISA-SIL 208 (236)
T ss_pred CcEEeEEEEEEEEEEEcCC------CcEEEEEEEEcCC-ccc
Confidence 9999999999999999875 6899999999999 999
No 5
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=100.00 E-value=8.8e-35 Score=295.03 Aligned_cols=179 Identities=14% Similarity=0.115 Sum_probs=160.0
Q ss_pred CCCCCcccCCCCCCCCccCCCcCCCcc--cccccCCCCEEEEEeCCeEEEEEecCCCCCcccEEEEEEeecCCHHHHHHH
Q 006391 81 HGPETLLRQSSDLGGSVRGEGFFEGDI--GDAIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEV 158 (647)
Q Consensus 81 ~~~~~~~~~w~~~~~~~~~~ls~~n~~--~~~~a~sgW~l~~~kngVrVf~~~~~~~~~~~~~~Ka~~vVdaspe~Vfe~ 158 (647)
+--..+|++||++||+ ||||+|++ +.+.+.+||++...++||+||+++. +..+.+|++++++++++++|++
T Consensus 23 ~~~~~~~~~~~~~~~~---~~~~~~~~~l~~l~~~~~W~l~~~k~gIkVytr~~----s~~l~fk~e~~vd~s~~~v~dl 95 (235)
T cd08873 23 QREVPLSVAWDRSNQM---YLSYGNVTALKRLAAKSDWTVASSTTSVTLYTLEQ----DGVLSFCVELKVQTCASDAFDL 95 (235)
T ss_pred CccCceEcccCccccE---EEeeCCHHHHhhccccCCCEEEEcCCCEEEEEecC----CCceEEEEEEEecCCHHHHHHH
Confidence 3445699999999999 89999955 9999999999999999999999973 2336799999999999999999
Q ss_pred HHccCCcccccccCCCCceEEEEeecCceeEEEEEecCCCCCCCCCCCeEEEEEEEEEc--CCCeEEEEEeeccCCCCCC
Q 006391 159 VLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRG--QDGTYTILQFPAVHKKRPP 236 (647)
Q Consensus 159 L~d~~~~~R~~WD~~~~~~evVE~iD~~tDIvY~~~~p~~lp~~vs~RDFV~LRswRr~--~dGsYvIa~~SV~Hp~~Pp 236 (647)
|.|.+. |.+||.++.++++|+++|++..|+|.++.+ |+++++||||++++|++. +++.|+|..+||.||.+||
T Consensus 96 L~D~~~--R~~WD~~~~e~evI~~id~d~~iyy~~~p~---PwPvk~RDfV~~~s~~~~~~~~~~~~I~~~SV~h~~~Pp 170 (235)
T cd08873 96 LSDPFK--RPEWDPHGRSCEEVKRVGEDDGIYHTTMPS---LTSEKPNDFVLLVSRRKPATDGDPYKVAFRSVTLPRVPQ 170 (235)
T ss_pred HhCcch--hhhhhhcccEEEEEEEeCCCcEEEEEEcCC---CCCCCCceEEEEEEEEeccCCCCeEEEEEeeeecccCCC
Confidence 999987 999999999999999999887667766554 447999999999999983 3356999999999999999
Q ss_pred CCCeeeEEEcceeEEEEecCCCCCCCCCccEEEEEEEEcCC
Q 006391 237 KSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSS 277 (647)
Q Consensus 237 ~~G~VRAei~~sGylI~P~~~~~~~~~~~~~VT~I~qvDlk 277 (647)
++|||||+..+|||+|+|+++ ++|+|||++|+||+
T Consensus 171 ~kgyVR~~~~~ggW~I~p~~~------~~t~VtY~~~~dPg 205 (235)
T cd08873 171 TPGYSRTEVACAGFVIRQDCG------TCTEVSYYNETNPK 205 (235)
T ss_pred CCCeEEEEEEeeeEEEEECCC------CcEEEEEEEEcCCC
Confidence 999999999999999999875 68999999999995
No 6
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=100.00 E-value=2.5e-34 Score=293.24 Aligned_cols=180 Identities=20% Similarity=0.214 Sum_probs=161.8
Q ss_pred CCCcccCCCCCCCCccCCCcCCCcc--cccccCCCCEEEEEeCCeEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHH
Q 006391 83 PETLLRQSSDLGGSVRGEGFFEGDI--GDAIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVL 160 (647)
Q Consensus 83 ~~~~~~~w~~~~~~~~~~ls~~n~~--~~~~a~sgW~l~~~kngVrVf~~~~~~~~~~~~~~Ka~~vVdaspe~Vfe~L~ 160 (647)
-..+|+|||++||+ ||||||++ +.+.+.+||++.+.++||+||+++.. ..+.||++++|++|++++|++|.
T Consensus 29 ~~~~~~~~~~~~~~---~~~~~~~~~l~~l~~~~~W~l~~~~~gI~Vyt~~~s----~~~~fK~e~~vd~s~e~v~~lL~ 101 (240)
T cd08913 29 EVPLSVPWDPSNQV---YLSYNNVSALKMLVAKDNWVLSSEKNQVRLYTLEED----KFLSFKVEMVVHVDAAQAFLLLS 101 (240)
T ss_pred cCceecccCcccee---EEeecCHHHHHhhcccCCCEEEEccCCEEEEEEeCC----CccEEEEEEEEcCCHHHHHHHHh
Confidence 45599999999999 89999965 99999999999999999999997542 33689999999999999999999
Q ss_pred ccCCcccccccCCCCceEEEEeecCceeEEEEEecCCCCCCCCCCCeEEEEEEEEEc-CCC-eEEEEEeeccCCCCCCCC
Q 006391 161 NLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRG-QDG-TYTILQFPAVHKKRPPKS 238 (647)
Q Consensus 161 d~~~~~R~~WD~~~~~~evVE~iD~~tDIvY~~~~p~~lp~~vs~RDFV~LRswRr~-~dG-sYvIa~~SV~Hp~~Pp~~ 238 (647)
|.+. |++||.++.++++|+++|++. .+|++..+.| ++++++||||++++|++. ++| .|+|+.+||.||++||++
T Consensus 102 D~~~--r~~Wd~~~~e~~vIe~id~~~-~vY~v~~~p~-~~pvs~RDfV~~~s~~~~~~~g~~yii~~~sv~~P~~Pp~k 177 (240)
T cd08913 102 DLRR--RPEWDKHYRSCELVQQVDEDD-AIYHVTSPSL-SGHGKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHPPTP 177 (240)
T ss_pred Chhh--hhhhHhhccEEEEEEecCCCc-EEEEEecCCC-CCCCCCCeEEEEEEEEeccCCCccEEEEEEEeecCCCCCCC
Confidence 9987 999999999999999999985 5788877765 468999999999999874 333 799999999999999999
Q ss_pred CeeeEEEcceeEEEEecCCCCCCCCCccEEEEEEEEcCCCcc
Q 006391 239 GYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 280 (647)
Q Consensus 239 G~VRAei~~sGylI~P~~~~~~~~~~~~~VT~I~qvDlkGw~ 280 (647)
|||||+..+|||+|.|.++ ++|+|||+.++|+ |++
T Consensus 178 gyVR~~~~~ggw~i~p~~~------~~t~vtY~~~~dP-G~L 212 (240)
T cd08913 178 EYTRGETLCSGFCIWEESD------QLTKVSYYNQATP-GVL 212 (240)
T ss_pred CcEEeeecccEEEEEECCC------CcEEEEEEEEeCC-ccc
Confidence 9999999999999999875 6899999999998 588
No 7
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=100.00 E-value=3.3e-34 Score=283.17 Aligned_cols=177 Identities=16% Similarity=0.209 Sum_probs=156.9
Q ss_pred CCCCEEEEEeCCeEEEEEecCCCCCcccEEEEEEeecCCHHHHH-HHHHccCCcccccccCCCCceEEEEeecCceeEEE
Q 006391 113 AHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVF-EVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVY 191 (647)
Q Consensus 113 ~sgW~l~~~kngVrVf~~~~~~~~~~~~~~Ka~~vVdaspe~Vf-e~L~d~~~~~R~~WD~~~~~~evVE~iD~~tDIvY 191 (647)
..||.....++|+.|+.+... .+....++|+...|+++|.+|. ++|. +|++||.++.+.++||+||+++||+|
T Consensus 26 ~kgW~~~~~~~~vev~~kk~~-d~~~l~lwk~s~ei~~~p~~vl~rvL~-----dR~~WD~~m~e~~~Ie~Ld~n~dI~y 99 (205)
T cd08907 26 FKGWHSAPGPDNTELACKKVG-DGHPLRLWKVSTEVEAPPSVVLQRVLR-----ERHLWDEDLLHSQVIEALENNTEVYH 99 (205)
T ss_pred cCCceeecCCCCcEEEEEeCC-CCCceEEEEEEEEecCCCHHHHHHHhh-----chhhhhHHHHhhhhheeecCCCEEEE
Confidence 579999999999999877443 2456679999999998665555 5554 39999999999999999999999999
Q ss_pred EEecCCCCCCCCCCCeEEEEEEEEEc-CCCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCccEEEE
Q 006391 192 GTYDPKYLTRWQSKRDFVFSRQWFRG-QDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQ 270 (647)
Q Consensus 192 ~~~~p~~lp~~vs~RDFV~LRswRr~-~dGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~~~VT~ 270 (647)
|+++.+ .++++||||++|+|+.. +.|.|+|+++||.|++.||.+| |||.++.+||+|+|+++ ++|+|||
T Consensus 100 Y~~~~~---~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp~~g-VRa~~l~sgYlIep~g~------g~s~lty 169 (205)
T cd08907 100 YVTDSM---APHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQLEAG-VRAVLLTSQYLIEPCGM------GRSRLTH 169 (205)
T ss_pred EEecCC---CCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCCCCC-eEEEEEeccEEEEECCC------CCeEEEE
Confidence 999853 47999999999999874 6678999999999999999999 99999999999999975 6899999
Q ss_pred EEEEcCCCccccccCcccceehhhHHHHHHHHHHHHHHhhc
Q 006391 271 MLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA 311 (647)
Q Consensus 271 I~qvDlkGw~~w~p~~~~~~~~~~~~~mL~~va~LRe~~~~ 311 (647)
|+++|+|||+ |.|+++..++++++ .+.+||+.|..
T Consensus 170 i~rvD~rG~~---P~Wynk~~g~~~a~---~l~~ir~sF~~ 204 (205)
T cd08907 170 ICRADLRGRS---PDWYNKVFGHLCAM---EVARIRDSFPT 204 (205)
T ss_pred EEEeCCCCCC---cHHHHHhHHHHHHH---HHHHHHhhccC
Confidence 9999999999 99999999999886 88999999864
No 8
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=100.00 E-value=6.8e-34 Score=283.57 Aligned_cols=177 Identities=18% Similarity=0.214 Sum_probs=155.2
Q ss_pred CCCEEEEEeCCeEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceeEEEEE
Q 006391 114 HEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGT 193 (647)
Q Consensus 114 sgW~l~~~kngVrVf~~~~~~~~~~~~~~Ka~~vVdaspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE~iD~~tDIvY~~ 193 (647)
.||..+...|++.++.+... .+...+++|++++|+++|++|+..+.+ +|++||.++.++++||++|+|+||+||+
T Consensus 27 k~w~~~~~~~~~e~~ykK~~-d~~~lk~~r~~~ei~~~p~~VL~~vl~----~R~~WD~~~~~~~~ie~ld~~tdi~~y~ 101 (205)
T cd08909 27 KGWISCSSSDNTELAYKKVG-DGNPLRLWKVSVEVEAPPSVVLNRVLR----ERHLWDEDFLQWKVVETLDKQTEVYQYV 101 (205)
T ss_pred cCCcccCCcCCeEEEEecCC-CCCceEEEEEEEEeCCCHHHHHHHHHh----hHhhHHhhcceeEEEEEeCCCcEEEEEE
Confidence 46666666677776443222 345567999999999999999888866 3999999999999999999999999999
Q ss_pred ecCCCCCCCCCCCeEEEEEEEEEc-CCCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCccEEEEEE
Q 006391 194 YDPKYLTRWQSKRDFVFSRQWFRG-QDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQML 272 (647)
Q Consensus 194 ~~p~~lp~~vs~RDFV~LRswRr~-~dGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~~~VT~I~ 272 (647)
+++++ ++++||||++|+|+++ ++|+|+|+++||+|++|||. |||||+++.+||+|+|+++ ++|+|||++
T Consensus 102 ~~~~~---P~~~RD~v~~R~w~~~~~~G~~vi~~~Sv~H~~~p~~-g~VRa~~~~~gylI~P~~~------g~trvt~i~ 171 (205)
T cd08909 102 LNCMA---PHPSRDFVVLRSWRTDLPKGACSLVSVSVEHEEAPLL-GGVRAVVLDSQYLIEPCGS------GKSRLTHIC 171 (205)
T ss_pred eecCC---CCCCCEEEEEEEEEEeCCCCcEEEEEecCCCCcCCCC-CcEEEEEEcCcEEEEECCC------CCEEEEEEE
Confidence 99753 6899999999999986 68999999999999999996 9999999999999999986 579999999
Q ss_pred EEcCCCccccccCcccceehhhHHHHHHHHHHHHHHhhc
Q 006391 273 EIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA 311 (647)
Q Consensus 273 qvDlkGw~~w~p~~~~~~~~~~~~~mL~~va~LRe~~~~ 311 (647)
++|+|||+ |.|+++..+|++++ .+.+||+.|..
T Consensus 172 ~vDpkG~~---P~W~~n~~g~~~~~---~~~~~r~sf~~ 204 (205)
T cd08909 172 RVDLKGHS---PEWYNKGFGHLCAA---EAARIRNSFQP 204 (205)
T ss_pred EecCCCCC---hHHHHHhHHHHHHH---HHHHHHhhccC
Confidence 99999999 99999999999886 88999999864
No 9
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=100.00 E-value=1.4e-32 Score=274.18 Aligned_cols=186 Identities=23% Similarity=0.398 Sum_probs=162.1
Q ss_pred cccCCCCEEEEEeC-CeEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHH-ccCCcccccccCCCCceEEEEeecCce
Q 006391 110 AIEAHEWKCVRTLN-GVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVL-NLERHQRYEWDMLTGDLELVDSYDGHY 187 (647)
Q Consensus 110 ~~a~sgW~l~~~kn-gVrVf~~~~~~~~~~~~~~Ka~~vVdaspe~Vfe~L~-d~~~~~R~~WD~~~~~~evVE~iD~~t 187 (647)
+....||++...++ |++||++..+. .++++|++++|+++|++||+.|+ |.+. |++||+++.++++|+++|+++
T Consensus 20 ~~~~~~W~l~~~~~~~i~i~~r~~~~---~~~~~k~~~~i~~~~~~v~~~l~~d~~~--~~~Wd~~~~~~~~i~~~d~~~ 94 (208)
T cd08868 20 ILTDPGWKLEKNTTWGDVVYSRNVPG---VGKVFRLTGVLDCPAEFLYNELVLNVES--LPSWNPTVLECKIIQVIDDNT 94 (208)
T ss_pred HhcCCCceEEEecCCCCEEEEEEcCC---CceEEEEEEEEcCCHHHHHHHHHcCccc--cceecCcccceEEEEEecCCc
Confidence 34566999999987 99999997542 33789999999999999998665 6554 999999999999999999999
Q ss_pred eEEEEEecCCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCccE
Q 006391 188 DVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCL 267 (647)
Q Consensus 188 DIvY~~~~p~~lp~~vs~RDFV~LRswRr~~dGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~~~ 267 (647)
+|+|+++++. +|+++++||||++|+|++.+ |.|+|+.+|+.||.+||++|||||+...+||+|+|+++ ++++|.
T Consensus 95 ~i~y~~~~~~-~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~----~~~~t~ 168 (208)
T cd08868 95 DISYQVAAEA-GGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPN----NPNKCN 168 (208)
T ss_pred EEEEEEecCc-CCCcccccceEEEEEEEecC-CeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCC----CCCceE
Confidence 9999998875 34689999999999999866 57999999999999999999999999999999999975 457899
Q ss_pred EEEEEEEcCCCccccccCcccceehhhHHHHHHHHHHHHHHhhc
Q 006391 268 VTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA 311 (647)
Q Consensus 268 VT~I~qvDlkGw~~w~p~~~~~~~~~~~~~mL~~va~LRe~~~~ 311 (647)
|||++++|||||+ |.|. +...+...+++.+.+||+++..
T Consensus 169 v~~~~~~Dp~G~i---P~~l--vN~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08868 169 FTWLLNTDLKGWL---PQYL--VDQALASVLLDFMKHLRKRIAT 207 (208)
T ss_pred EEEEEEECCCCCC---ccee--eehhhHHHHHHHHHHHHHHHhh
Confidence 9999999999999 6654 4455666778899999999864
No 10
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=100.00 E-value=1.1e-32 Score=273.55 Aligned_cols=177 Identities=18% Similarity=0.231 Sum_probs=157.5
Q ss_pred CCCCEEEEEeCCeEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceeEEEE
Q 006391 113 AHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYG 192 (647)
Q Consensus 113 ~sgW~l~~~kngVrVf~~~~~~~~~~~~~~Ka~~vVdaspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE~iD~~tDIvY~ 192 (647)
..||++...++||+||++..+. +...+.+|++++|+++|++|++.|++ .|.+||.++.++++|+++|++++|+|+
T Consensus 18 ~~~W~~~~~~~gi~I~~k~~~~-~~~l~~~K~~~~v~a~~~~v~~~l~d----~r~~Wd~~~~~~~vie~id~~~~i~y~ 92 (197)
T cd08869 18 SKGWVSVSSSDHVELAFKKVDD-GHPLRLWRASTEVEAPPEEVLQRILR----ERHLWDDDLLQWKVVETLDEDTEVYQY 92 (197)
T ss_pred cCCceEEecCCcEEEEEEeCCC-CCcEEEEEEEEEeCCCHHHHHHHHHH----HHhccchhhheEEEEEEecCCcEEEEE
Confidence 6899999999999999996632 23567899999999999999999986 389999999999999999999999999
Q ss_pred EecCCCCCCCCCCCeEEEEEEEEE-cCCCeEEEEEeeccCC-CCCCCCCeeeEEEcceeEEEEecCCCCCCCCCccEEEE
Q 006391 193 TYDPKYLTRWQSKRDFVFSRQWFR-GQDGTYTILQFPAVHK-KRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQ 270 (647)
Q Consensus 193 ~~~p~~lp~~vs~RDFV~LRswRr-~~dGsYvIa~~SV~Hp-~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~~~VT~ 270 (647)
++++.| ++++||||++|+|+. .++|+|+|+++||.|| .+|+ |||||+.+.+||+|+|+++ ++|+|||
T Consensus 93 ~~~~p~---pv~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p~--g~VR~~~~~~g~~i~p~~~------~~t~vty 161 (197)
T cd08869 93 VTNSMA---PHPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPVPL--GGVRAVVLASRYLIEPCGS------GKSRVTH 161 (197)
T ss_pred EeeCCC---CCCCceEEEEEEEEecCCCCcEEEEEECCcCCCCCCC--CCEEEEEEeeeEEEEECCC------CCeEEEE
Confidence 988754 689999999999987 4678999999999996 5666 9999999999999999875 5899999
Q ss_pred EEEEcCCCccccccCcccceehhhHHHHHHHHHHHHHHhhc
Q 006391 271 MLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA 311 (647)
Q Consensus 271 I~qvDlkGw~~w~p~~~~~~~~~~~~~mL~~va~LRe~~~~ 311 (647)
++++||+||+ |.|+.+..++++.. .|.+||+.|.+
T Consensus 162 ~~~~Dp~G~i---P~wl~N~~~~~~~~---~~~~l~~~~~~ 196 (197)
T cd08869 162 ICRVDLRGRS---PEWYNKVYGHLCAR---ELLRIRDSFRQ 196 (197)
T ss_pred EEEECCCCCC---CceeecchHhHHHH---HHHHHHhhccC
Confidence 9999999999 88888888887764 78899999874
No 11
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=100.00 E-value=1.3e-32 Score=271.36 Aligned_cols=182 Identities=19% Similarity=0.298 Sum_probs=164.6
Q ss_pred ccCCCCEEEEEeCCeEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceeEE
Q 006391 111 IEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVV 190 (647)
Q Consensus 111 ~a~sgW~l~~~kngVrVf~~~~~~~~~~~~~~Ka~~vVdaspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE~iD~~tDIv 190 (647)
+..++|++.+.++|+.|+++... .+.++++|++|+|+..+++|++.|.+... |.+||+++.++++||+||++|.|+
T Consensus 20 ~~~~~Wkl~k~~~~~~v~~k~~~--ef~gkl~R~Egvv~~~~~ev~d~v~~~~~--r~~Wd~~v~~~~Iie~Id~dt~I~ 95 (202)
T cd08902 20 ILEEEWRVAKKSKDVTVWRKPSE--EFGGYLYKAQGVVEDVYNRIVDHIRPGPY--RLDWDSLMTSMDIIEEFEENCCVM 95 (202)
T ss_pred ccccCcEEEEeCCCEEEEEecCC--cCCCceEEEEEEecCCHHHHHHHHhcccc--hhcccchhhheeHhhhhcCCcEEE
Confidence 46789999999999999999763 36678999999999999999999988765 999999999999999999999999
Q ss_pred EEEecCCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCccEEEE
Q 006391 191 YGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQ 270 (647)
Q Consensus 191 Y~~~~p~~lp~~vs~RDFV~LRswRr~~dGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~~~VT~ 270 (647)
||++... +.+.++|||||.+|++.+.+|| |+.+..|++|+..|| |||||+++++||++.|+++ ++++|.+||
T Consensus 96 ~yvt~~~-~~~iISpRDFVdv~~~~~~~d~-~~s~gvs~~~~~~pp--g~VRgen~p~g~i~~Pl~~----~p~k~~~t~ 167 (202)
T cd08902 96 RYTTAGQ-LLNIISPREFVDFSYTTQYEDG-LLSCGVSIEYEEARP--NFVRGFNHPCGWFCVPLKD----NPSHSLLTG 167 (202)
T ss_pred EEEcccC-CcCccCccceEEEEEEEEeCCC-eEEEEeeecCCCCCC--CeEeecccccEEEEEECCC----CCCceEEEE
Confidence 7765554 3478999999999999999888 578899999999888 9999999999999999997 568999999
Q ss_pred EEEEcCCCccccccCcccceehhhHHHHHHHHHHHHHHh
Q 006391 271 MLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYI 309 (647)
Q Consensus 271 I~qvDlkGw~~w~p~~~~~~~~~~~~~mL~~va~LRe~~ 309 (647)
++|+|+|||+ |+ +.+++.|...|+++...||..+
T Consensus 168 ~lq~DLkG~L---Pq--siIdq~~~~~~~~F~~~Lrk~~ 201 (202)
T cd08902 168 YIQTDLRGML---PQ--SAVDTAMASTLVNFYSDLKKAL 201 (202)
T ss_pred EEEecCCCCc---cH--HHHHHHhhHHHHHHHHHHHHhc
Confidence 9999999999 76 7788999999999999999876
No 12
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=100.00 E-value=4.1e-32 Score=272.11 Aligned_cols=188 Identities=20% Similarity=0.271 Sum_probs=161.7
Q ss_pred cccccCCCCEEEEE-eCCeEEEEEecCCCCCcccEEEEEEeecCCHHHHH-HHHHccCCcccccccCCCCceEEEEeecC
Q 006391 108 GDAIEAHEWKCVRT-LNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVF-EVVLNLERHQRYEWDMLTGDLELVDSYDG 185 (647)
Q Consensus 108 ~~~~a~sgW~l~~~-kngVrVf~~~~~~~~~~~~~~Ka~~vVdaspe~Vf-e~L~d~~~~~R~~WD~~~~~~evVE~iD~ 185 (647)
..+.+.+||++... +||++||++..+ +.++.||++++|++|++.+| ++|.|.+. |.+||.++.++++|+++|+
T Consensus 19 ~~l~~~~~W~l~~~~~~gi~V~s~~~~---~~~~~fk~~~~v~~~~~~l~~~ll~D~~~--~~~W~~~~~~~~vi~~~~~ 93 (209)
T cd08906 19 QILAQEENWKFEKNNDNGDTVYTLEVP---FHGKTFILKAFMQCPAELVYQEVILQPEK--MVLWNKTVSACQVLQRVDD 93 (209)
T ss_pred HHhhcccCCEEEEecCCCCEEEEeccC---CCCcEEEEEEEEcCCHHHHHHHHHhChhh--ccccCccchhhhheeeccC
Confidence 56777899999876 599999997553 22388999999999999998 57888886 9999999999999999999
Q ss_pred ceeEEEEEecCCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCc
Q 006391 186 HYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAK 265 (647)
Q Consensus 186 ~tDIvY~~~~p~~lp~~vs~RDFV~LRswRr~~dGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~ 265 (647)
+++|+|.+..| |+++++++||||++|+|++.+++ |+++..|+.|+.+||++|||||+++++||+|.|.+. ++++
T Consensus 94 ~~~i~Y~v~~p-~~~~pv~~RDfV~~r~~~~~~~~-~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~----~~~~ 167 (209)
T cd08906 94 NTLVSYDVAAG-AAGGVVSPRDFVNVRRIERRRDR-YVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSAS----NPSV 167 (209)
T ss_pred CcEEEEEEccc-cccCCCCCCceEEEEEEEecCCc-EEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCC----CCCc
Confidence 99999955444 44568999999999999998776 999999999999999999999999999999999743 3478
Q ss_pred cEEEEEEEEcCCCccccccCcccceehhhHHHHHHHHHHHHHHhhc
Q 006391 266 CLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA 311 (647)
Q Consensus 266 ~~VT~I~qvDlkGw~~w~p~~~~~~~~~~~~~mL~~va~LRe~~~~ 311 (647)
|+|||++|+|||||+ |.|. +.+.+.-.++.++.+||+.++.
T Consensus 168 t~vt~~~~~Dp~G~l---P~~l--vN~~~~~~~~~~~~~LR~~~~~ 208 (209)
T cd08906 168 CTFIWILNTDLKGRL---PRYL--IHQSLAATMFEFASHLRQRIRD 208 (209)
T ss_pred eEEEEEEecCCCCCC---CHHH--HHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999 5533 3456677788999999998864
No 13
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=100.00 E-value=1.3e-31 Score=266.98 Aligned_cols=183 Identities=20% Similarity=0.245 Sum_probs=158.2
Q ss_pred CCCCEEEEEeCCeEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHHc--cCCcccccccCCCCceEEEEeecCceeEE
Q 006391 113 AHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLN--LERHQRYEWDMLTGDLELVDSYDGHYDVV 190 (647)
Q Consensus 113 ~sgW~l~~~kngVrVf~~~~~~~~~~~~~~Ka~~vVdaspe~Vfe~L~d--~~~~~R~~WD~~~~~~evVE~iD~~tDIv 190 (647)
..||++...++|++||++... ...++++|+++.|++++++|+++|++ .. .|.+||..+.++++||++|++++|+
T Consensus 21 ~~~W~~~~~~~~i~v~~~~~~--~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~--~r~~Wd~~~~~~~~le~id~~~~i~ 96 (206)
T cd08867 21 TDGWKVLKTVKNITVSWKPST--EFTGHLYRAEGIVDALPEKVIDVIIPPCGG--LRLKWDKSLKHYEVLEKISEDLCVG 96 (206)
T ss_pred cCCcEEEEcCCCcEEEEecCC--CCCCEEEEEEEEEcCCHHHHHHHHHhcCcc--ccccccccccceEEEEEeCCCeEEE
Confidence 379999999999999998432 23447899999999999999999998 44 4999999999999999999999999
Q ss_pred EEEecCCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCccEEEE
Q 006391 191 YGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQ 270 (647)
Q Consensus 191 Y~~~~p~~lp~~vs~RDFV~LRswRr~~dGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~~~VT~ 270 (647)
|+..... ..+++++||||++|+|++.++|.|+++.+||+||.+||.+|||||++..+||+|+|+++ ++++|.+||
T Consensus 97 ~~~~p~~-~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~----~~~~t~~~~ 171 (206)
T cd08867 97 RTITPSA-AMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKG----SPDKSFLVL 171 (206)
T ss_pred EEEcccc-ccCccCCcceEEEEEEEEeCCCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCC----CCCceEEEE
Confidence 9964422 12469999999999999988889999999999999999999999999999999999875 346899999
Q ss_pred EEEEcCCCccccccCcccceehhhHHHHHHHHHHHHHHh
Q 006391 271 MLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYI 309 (647)
Q Consensus 271 I~qvDlkGw~~w~p~~~~~~~~~~~~~mL~~va~LRe~~ 309 (647)
++++|||||+ |.|. +...+..+|+..+..||.++
T Consensus 172 ~~~~DpkG~i---P~~l--vn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 172 YVQTDLRGMI---PQSL--VESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred EEEeccCCCC---cHHH--HHhhhhhhHHHHHHHHHHhc
Confidence 9999999999 6533 34566667788999999875
No 14
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=99.98 E-value=5.5e-31 Score=263.63 Aligned_cols=187 Identities=20% Similarity=0.239 Sum_probs=158.3
Q ss_pred cCCCCEEEEEeCCeEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceeEEE
Q 006391 112 EAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVY 191 (647)
Q Consensus 112 a~sgW~l~~~kngVrVf~~~~~~~~~~~~~~Ka~~vVdaspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE~iD~~tDIvY 191 (647)
..+||++...+||++||++.... ..+..+|++++|+++++++|++|+|.....|.+||.++.++++||++|+++.|+|
T Consensus 20 ~~~~W~~~~~~~~i~v~~~~~~~--~~~~~~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~~i~~ 97 (208)
T cd08903 20 DESGWKTCRRTNEVAVSWRPSAE--FAGNLYKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDVSVCR 97 (208)
T ss_pred cccCCEEEEcCCCEEEEeeecCC--CCCcEEEEEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCCEEEEE
Confidence 46899999999999999985421 2335699999999999999999997632148999999999999999999999988
Q ss_pred EEecCCCC-CCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCccEEEE
Q 006391 192 GTYDPKYL-TRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQ 270 (647)
Q Consensus 192 ~~~~p~~l-p~~vs~RDFV~LRswRr~~dGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~~~VT~ 270 (647)
..+ .|. .+.+++||||++|+|++.+||.|++...|+.||.|||++|||||+..++||++.|++. ++++|.|||
T Consensus 98 ~~~--p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~----~~~~t~v~~ 171 (208)
T cd08903 98 TVT--PSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPG----EPDKTQLVS 171 (208)
T ss_pred Eec--chhcCCCcCCCceEEEEEEEecCCceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCC----CCCceEEEE
Confidence 832 231 2459999999999999999999999999999999999999999999999999999985 347899999
Q ss_pred EEEEcCCCccccccCcccceehhhHHHHHHHHHHHHHHhhc
Q 006391 271 MLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA 311 (647)
Q Consensus 271 I~qvDlkGw~~w~p~~~~~~~~~~~~~mL~~va~LRe~~~~ 311 (647)
++++|||||+ |.|. +.+.+...|..++.+||..++.
T Consensus 172 ~~~~DpkG~i---P~~l--vn~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08903 172 FFQTDLSGYL---PQTV--VDSFFPASMAEFYNNLTKAVKA 207 (208)
T ss_pred EEEeccCCCc---CHHH--HHHHhhHHHHHHHHHHHHHHhh
Confidence 9999999999 6533 3345556677899999998753
No 15
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=99.97 E-value=8.8e-31 Score=261.77 Aligned_cols=193 Identities=15% Similarity=0.167 Sum_probs=161.9
Q ss_pred cCCCc--ccccccCCCCEEEEEeCCeEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEE
Q 006391 102 FFEGD--IGDAIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLEL 179 (647)
Q Consensus 102 s~~n~--~~~~~a~sgW~l~~~kngVrVf~~~~~~~~~~~~~~Ka~~vVdaspe~Vfe~L~d~~~~~R~~WD~~~~~~ev 179 (647)
.+.|+ .+++.+.+||++.+.++||+||+++.+. .-..+|++++|++|+++|+++|.|.+. |++||.++.++++
T Consensus 8 ~~~n~~~l~~~~~~~gW~l~~~~~gI~Vy~k~~~~---~~~~~~ge~~v~as~~~v~~ll~D~~~--r~~Wd~~~~~~~v 82 (205)
T cd08874 8 CSVNLSNLDQCQATAGWSYQCLEKDVVIYYKVFNG---TYHGFLGAGVIKAPLATVWKAVKDPRT--RFLYDTMIKTARI 82 (205)
T ss_pred hhhhHHHHHhhhccCCcEEEecCCCEEEEEecCCC---CcceEEEEEEEcCCHHHHHHHHhCcch--hhhhHHhhhheee
Confidence 34453 4889999999999999999999996432 346789999999999999999999987 9999999999999
Q ss_pred EEeecCceeEEEEEecCCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCC-CeeeEEEcceeEEEEecCCC
Q 006391 180 VDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKS-GYRRTKINPSTWEIRSLNLP 258 (647)
Q Consensus 180 VE~iD~~tDIvY~~~~p~~lp~~vs~RDFV~LRswRr~~dGsYvIa~~SV~Hp~~Pp~~-G~VRAei~~sGylI~P~~~~ 258 (647)
|+++|+++.|+|+++...| |..+++||||++++|++.++ .|+|..+||.||.+||.+ |||||++++|||+|+|+..+
T Consensus 83 l~~~~~d~~i~y~~~~~Pw-p~~~~~RDfV~l~~~~~~~~-~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~ 160 (205)
T cd08874 83 HKTFTEDICLVYLVHETPL-CLLKQPRDFCCLQVEAKEGE-LSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVE 160 (205)
T ss_pred eeecCCCeEEEEEEecCCC-CCCCCCCeEEEEEEEEECCC-cEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccC
Confidence 9999999999999888665 55679999999999987655 577999999999999996 99999999999999999432
Q ss_pred CCCCCCccEEEEEEEEcCC-CccccccCcc-cceehhhHHHHHHHHHHHHHHhhc
Q 006391 259 MGSNGAKCLVTQMLEIHSS-GWCRWKKNSS-TKFEKTTHFALLSQVAGLKEYIGA 311 (647)
Q Consensus 259 ~~~~~~~~~VT~I~qvDlk-Gw~~w~p~~~-~~~~~~~~~~mL~~va~LRe~~~~ 311 (647)
+.++|+|||++|+||+ |-+ |.|. |.+ +......||.||.|+++
T Consensus 161 ---g~~~t~vty~~q~DPggg~i---P~~l~N~~----~~~~p~~~~~~~~~~~~ 205 (205)
T cd08874 161 ---GNQYTRVIYIAQVALCGPDV---PAQLLSSL----SKRQPLVIARLALFLEA 205 (205)
T ss_pred ---CCCcEEEEEEEEECCCCCCC---CHHHHhHH----HHhccHHHHHHHHHhhC
Confidence 3368999999999999 788 4433 222 22334578899988763
No 16
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=99.97 E-value=2.3e-29 Score=253.51 Aligned_cols=188 Identities=21% Similarity=0.298 Sum_probs=158.1
Q ss_pred cccccCCCCEEEEEeCCeEEEEEecCCCCCcccEEEEEEee-cCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCc
Q 006391 108 GDAIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVI-DASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGH 186 (647)
Q Consensus 108 ~~~~a~sgW~l~~~kngVrVf~~~~~~~~~~~~~~Ka~~vV-daspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE~iD~~ 186 (647)
..+-...||++...++||+||++..+ ++....+|+++++ +++++.+|++|+|.+. |++||+++.++++|+++|++
T Consensus 17 ~~~~~~~~W~~~~~~~gi~iy~r~~~--~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~--r~~Wd~~~~e~~~ie~~d~~ 92 (222)
T cd08871 17 KLCDSTDGWKLKYNKNNVKVWTKNPE--NSSIKMIKVSAIFPDVPAETLYDVLHDPEY--RKTWDSNMIESFDICQLNPN 92 (222)
T ss_pred HHhcCCCCcEEEEcCCCeEEEEeeCC--CCceEEEEEEEEeCCCCHHHHHHHHHChhh--hhhhhhhhceeEEEEEcCCC
Confidence 33444579999999999999999664 2455789999986 7899999999999876 99999999999999999999
Q ss_pred eeEEEEEecCCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCcc
Q 006391 187 YDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKC 266 (647)
Q Consensus 187 tDIvY~~~~p~~lp~~vs~RDFV~LRswRr~~dGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~~ 266 (647)
++|+|++++.. +++++||||++|+|++.+ |.|+|+.+|+.||.+|+.+|||||.+..+||+|+|+++ ++|
T Consensus 93 ~~i~y~~~~~P---~pvs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~------~~t 162 (222)
T cd08871 93 NDIGYYSAKCP---KPLKNRDFVNLRSWLEFG-GEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGP------KGC 162 (222)
T ss_pred CEEEEEEeECC---CCCCCCeEEEEEEEEeCC-CEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCC------CCE
Confidence 99999998854 469999999999999876 78999999999999999999999999999999999875 579
Q ss_pred EEEEEEEEcCCCccccccCcc-cceehhhH----HHHHHHHHHHHHHhhcC
Q 006391 267 LVTQMLEIHSSGWCRWKKNSS-TKFEKTTH----FALLSQVAGLKEYIGAN 312 (647)
Q Consensus 267 ~VT~I~qvDlkGw~~w~p~~~-~~~~~~~~----~~mL~~va~LRe~~~~~ 312 (647)
.|||+.++|++||+ |.|+ +.+..... ..|-..+.++++|.+.+
T Consensus 163 ~vt~~~~~Dp~G~I---P~~lvN~~~~~~~~~~l~~l~k~~~~y~~~~~~~ 210 (222)
T cd08871 163 TLTYVTQNDPKGSL---PKWVVNKATTKLAPKVMKKLHKAALKYPEWKAKN 210 (222)
T ss_pred EEEEEEecCCCCCc---CHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999 4433 34433333 33445666677777643
No 17
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.97 E-value=8.6e-29 Score=244.44 Aligned_cols=185 Identities=24% Similarity=0.291 Sum_probs=153.2
Q ss_pred cccccCCCCEEEEE-eCCeEEEEEecCCCCCcccEEEEEEeecCCHHHHH-HHHHccCCcccccccCCCCceEEEEeecC
Q 006391 108 GDAIEAHEWKCVRT-LNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVF-EVVLNLERHQRYEWDMLTGDLELVDSYDG 185 (647)
Q Consensus 108 ~~~~a~sgW~l~~~-kngVrVf~~~~~~~~~~~~~~Ka~~vVdaspe~Vf-e~L~d~~~~~R~~WD~~~~~~evVE~iD~ 185 (647)
....+..+|++... ++|+.+|++.... ++.+..+|++++|+++++++| +++.|.+. |++||+++.++++||++++
T Consensus 13 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~k~~~~v~~~~~~~~~~~~~d~~~--r~~Wd~~~~~~~~ie~~~~ 89 (206)
T smart00234 13 MAAASEPGWVLSSENENGDEVRSILSPG-RSPGEASRAVGVVPMVCADLVEELMDDLRY--RPEWDKNVAKAETLEVIDN 89 (206)
T ss_pred HhhCCCCccEEccccCCcceEEEEccCC-CCceEEEEEEEEEecChHHHHHHHHhcccc--hhhCchhcccEEEEEEECC
Confidence 34555789999997 8999999986532 245689999999999999755 66777765 9999999999999999999
Q ss_pred ceeEEEEEecCCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCc
Q 006391 186 HYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAK 265 (647)
Q Consensus 186 ~tDIvY~~~~p~~lp~~vs~RDFV~LRswRr~~dGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~ 265 (647)
+++|+|++++..| +++++||||++|+|+..++|.|+|+.+|+.||.+||.+|+|||++..+||+|+|+++ +.
T Consensus 90 ~~~i~~~~~~~~~--~p~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~------~~ 161 (206)
T smart00234 90 GTVIYHYVSKFVA--GPVSPRDFVFVRYWRELVDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGN------GP 161 (206)
T ss_pred CCeEEEEEEeccc--CcCCCCeEEEEEEEEEcCCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCC------CC
Confidence 9999999888653 379999999999999988889999999999999999999999999999999999986 45
Q ss_pred cEEEEEEEEcCCCccccccCcc-cceehhhHHHHHHHHHHHHHHh
Q 006391 266 CLVTQMLEIHSSGWCRWKKNSS-TKFEKTTHFALLSQVAGLKEYI 309 (647)
Q Consensus 266 ~~VT~I~qvDlkGw~~w~p~~~-~~~~~~~~~~mL~~va~LRe~~ 309 (647)
|+|||+.|+|++||+ |.|+ +.+.+..... .+..||..+
T Consensus 162 t~vt~~~~~D~~G~i---P~~lvn~~~~~~~~~---~~~~~~~~~ 200 (206)
T smart00234 162 SKVTWVSHADLKGWL---PHWLVRSLIKSGLAE---FAKTWVATL 200 (206)
T ss_pred eEEEEEEEEecCCCc---cceeehhhhhhhHHH---HHHHHHHHH
Confidence 999999999999999 5544 3444444443 344444443
No 18
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=99.96 E-value=5.4e-29 Score=249.48 Aligned_cols=184 Identities=18% Similarity=0.274 Sum_probs=155.7
Q ss_pred cCCCCEEEE-EeCCeEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHH-ccCCcccccccCCCCceEEEEeecCceeE
Q 006391 112 EAHEWKCVR-TLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVL-NLERHQRYEWDMLTGDLELVDSYDGHYDV 189 (647)
Q Consensus 112 a~sgW~l~~-~kngVrVf~~~~~~~~~~~~~~Ka~~vVdaspe~Vfe~L~-d~~~~~R~~WD~~~~~~evVE~iD~~tDI 189 (647)
..+||++.+ .++|++||++..+. . ++.+|++++++++++++++.|+ +.+. +++||.++.++++|+++|++++|
T Consensus 23 ~~~~W~~~~~~~~gi~v~s~~~~~--~-~k~~k~e~~i~~~~~~l~~~l~~d~e~--~~~W~~~~~~~~vl~~id~~~~i 97 (209)
T cd08905 23 DQEGWKTEIVAENGDKVLSKVVPD--I-GKVFRLEVVVDQPLDNLYSELVDRMEQ--MGEWNPNVKEVKILQRIGKDTLI 97 (209)
T ss_pred cccCCEEEEecCCCCEEEEEEcCC--C-CcEEEEEEEecCCHHHHHHHHHhchhh--hceecccchHHHHHhhcCCCceE
Confidence 457999996 58999999986642 2 2899999999999999995555 5554 99999999999999999999999
Q ss_pred EEEEecCCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCccEEE
Q 006391 190 VYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVT 269 (647)
Q Consensus 190 vY~~~~p~~lp~~vs~RDFV~LRswRr~~dGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~~~VT 269 (647)
+|+...| |..+++++||||++|+|++.+ +.++++..|+.||.+||++|||||+...+||+|+|+++ ++++|+||
T Consensus 98 ~y~~~~p-~p~~~vs~RD~V~~~~~~~~~-~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~----~~~~t~v~ 171 (209)
T cd08905 98 THEVAAE-TAGNVVGPRDFVSVRCAKRRG-STCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAG----DPSKTKLT 171 (209)
T ss_pred EEEEecc-CCCCccCccceEEEEEEEEcC-CcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCC----CCCceEEE
Confidence 9995444 322469999999999999875 45788899999999999999999999999999999975 34789999
Q ss_pred EEEEEcCCCccccccCcccceehhhHHHHHHHHHHHHHHhhc
Q 006391 270 QMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA 311 (647)
Q Consensus 270 ~I~qvDlkGw~~w~p~~~~~~~~~~~~~mL~~va~LRe~~~~ 311 (647)
|++++|||||+ |.|. +.+.+.-.++..+.+||+.+.+
T Consensus 172 ~~~~~DpkG~i---P~~l--vN~~~~~~~~~~~~~Lr~~~~~ 208 (209)
T cd08905 172 WLLSIDLKGWL---PKSI--INQVLSQTQVDFANHLRQRMAS 208 (209)
T ss_pred EEEeecCCCCC---CHHH--HHHHhHHhHHHHHHHHHHHHhc
Confidence 99999999999 6533 3456666778899999998864
No 19
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=99.96 E-value=8.4e-29 Score=247.10 Aligned_cols=176 Identities=17% Similarity=0.190 Sum_probs=154.4
Q ss_pred CCCEEEEEeCCeEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceeEEEEE
Q 006391 114 HEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGT 193 (647)
Q Consensus 114 sgW~l~~~kngVrVf~~~~~~~~~~~~~~Ka~~vVdaspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE~iD~~tDIvY~~ 193 (647)
.||......|++.++.+..+ .++..+.+|+++.|+++|++|+.+|.+. |.+||.++.++++|+++|++++|+|++
T Consensus 27 k~w~~~~~~~~~el~~~k~~-~gs~l~~~r~~~~i~a~~~~vl~~lld~----~~~Wd~~~~e~~vIe~ld~~~~I~Yy~ 101 (204)
T cd08908 27 KGWVSYSTSEQAELSYKKVS-EGPPLRLWRTTIEVPAAPEEILKRLLKE----QHLWDVDLLDSKVIEILDSQTEIYQYV 101 (204)
T ss_pred cCCcccCCCCcEEEEEeccC-CCCCcEEEEEEEEeCCCHHHHHHHHHhh----HHHHHHHhhheEeeEecCCCceEEEEE
Confidence 46766666777776444332 3566689999999999999999999774 899999999999999999999999999
Q ss_pred ecCCCCCCCCCCCeEEEEEEEEE-cCCCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCccEEEEEE
Q 006391 194 YDPKYLTRWQSKRDFVFSRQWFR-GQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQML 272 (647)
Q Consensus 194 ~~p~~lp~~vs~RDFV~LRswRr-~~dGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~~~VT~I~ 272 (647)
++++| ++++||||++|+|+. .++|.|+|..+|+.|+.+|+. +|||....+||+|+|+++ ++|+|||++
T Consensus 102 ~~~Pw---P~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P~~--~VR~~~~~~~w~i~P~g~------g~t~vtyi~ 170 (204)
T cd08908 102 QNSMA---PHPARDYVVLRTWRTNLPKGACALLATSVDHDRAPVA--GVRVNVLLSRYLIEPCGS------GKSKLTYMC 170 (204)
T ss_pred ccCCC---CCCCcEEEEEEEEEEeCCCCeEEEEEeecCcccCCcC--ceEEEEEeeEEEEEECCC------CcEEEEEEE
Confidence 99754 699999999999986 578899999999999999976 699999999999999975 689999999
Q ss_pred EEcCCCccccccCcccceehhhHHHHHHHHHHHHHHhhc
Q 006391 273 EIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA 311 (647)
Q Consensus 273 qvDlkGw~~w~p~~~~~~~~~~~~~mL~~va~LRe~~~~ 311 (647)
++||+|++ |.|+.+..+|++++ .+.+||+.|..
T Consensus 171 ~~DPgG~i---P~W~~N~~g~~~~~---~~~~~r~sf~~ 203 (204)
T cd08908 171 RIDLRGHM---PEWYTKSFGHLCAA---EVVKIRDSFSN 203 (204)
T ss_pred EeCCCCCC---cHHHHhhHHHHHHH---HHHHHHhhccC
Confidence 99999999 88899999999886 88999999953
No 20
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=99.96 E-value=7.2e-28 Score=245.56 Aligned_cols=189 Identities=13% Similarity=0.202 Sum_probs=148.5
Q ss_pred CCCCEEEEEeCCeEEEEEecCCCCCcccEEEEEEeec-CCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceeEEE
Q 006391 113 AHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVID-ASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVY 191 (647)
Q Consensus 113 ~sgW~l~~~kngVrVf~~~~~~~~~~~~~~Ka~~vVd-aspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE~iD~~tDIvY 191 (647)
..+|+++.+++||+||++..+..+..-..+|++++|+ +++++++++|+|.+. |.+||.++.++++||+++++++|+|
T Consensus 25 ~~~W~l~~~~~gikVy~r~~~~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~--r~~Wd~~~~~~~vie~l~~~~~I~Y 102 (235)
T cd08872 25 ADGWQLFAEEGEMKVYRREVEEDGVVLDPLKATHAVKGVTGHEVCHYFFDPDV--RMDWETTLENFHVVETLSQDTLIFH 102 (235)
T ss_pred CCCCEEEEeCCceEEEEEECCCCCceeeeEEEEEEECCCCHHHHHHHHhChhh--HHHHHhhhheeEEEEecCCCCEEEE
Confidence 4589999999999999997653222112599999999 899999999999987 9999999999999999999999999
Q ss_pred EEecCCCCCCCCCCCeEEEEEEEEEcCC-------CeEEEEEeeccCCCCCCCCCeeeEEE---ccee-EEEEecCCCCC
Q 006391 192 GTYDPKYLTRWQSKRDFVFSRQWFRGQD-------GTYTILQFPAVHKKRPPKSGYRRTKI---NPST-WEIRSLNLPMG 260 (647)
Q Consensus 192 ~~~~p~~lp~~vs~RDFV~LRswRr~~d-------GsYvIa~~SV~Hp~~Pp~~G~VRAei---~~sG-ylI~P~~~~~~ 260 (647)
+.++.. +++++||||++|+|++.++ +.|+|++.|+.||.+||++||||+.. +.++ |++.|.+.-..
T Consensus 103 ~~~k~P---wPvs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~ 179 (235)
T cd08872 103 QTHKRV---WPAAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEI 179 (235)
T ss_pred EEccCC---CCCCCcEEEEEEEEEecCccccccCCCeEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCCcccc
Confidence 999954 5799999999999998654 67999999999999999999999996 3444 44444221000
Q ss_pred C-CCCccEEEEEEEEcCCCcc-ccccCcccceehhhHHHHHHHHHHHHHHhhcC
Q 006391 261 S-NGAKCLVTQMLEIHSSGWC-RWKKNSSTKFEKTTHFALLSQVAGLKEYIGAN 312 (647)
Q Consensus 261 ~-~~~~~~VT~I~qvDlkGw~-~w~p~~~~~~~~~~~~~mL~~va~LRe~~~~~ 312 (647)
+ +..+|+|||++++||+||+ .|+. +.+.+..... .+..|-.|+..+
T Consensus 180 t~~~~~~~ity~~~~dPgG~iP~wvv---n~~~k~~~P~---~l~~~~~~~~~~ 227 (235)
T cd08872 180 TRDNILCKITYVANVNPGGWAPASVL---RAVYKREYPK---FLKRFTSYVQEK 227 (235)
T ss_pred cCCCCeEEEEEEEEeCCCCCccHHHH---HHHHHhhchH---HHHHHHHHHHHh
Confidence 0 1258999999999999999 2443 3444445444 556666666544
No 21
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.96 E-value=2.8e-27 Score=233.10 Aligned_cols=188 Identities=27% Similarity=0.441 Sum_probs=153.5
Q ss_pred cccCCCCEEEEEeCCeEEEEE-ecCCCCCcccEEEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCcee
Q 006391 110 AIEAHEWKCVRTLNGVRIFED-VADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYD 188 (647)
Q Consensus 110 ~~a~sgW~l~~~kngVrVf~~-~~~~~~~~~~~~Ka~~vVdaspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE~iD~~tD 188 (647)
.....||++...+++..++.. ..+........+|++++|+++++++|..|++.. . +||+.+.++++||+++++++
T Consensus 15 ~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~v~~~~~~~~~~~~~~~---~-~Wd~~~~~~~~le~~~~~~~ 90 (206)
T PF01852_consen 15 QEDEDGWKLYKDKKNGDVYYKKVSPSDSCPIKMFKAEGVVPASPEQVVEDLLDDR---E-QWDKMCVEAEVLEQIDEDTD 90 (206)
T ss_dssp HHTCTTCEEEEEETTTCEEEEEEECSSSTSCEEEEEEEEESSCHHHHHHHHHCGG---G-HHSTTEEEEEEEEEEETTEE
T ss_pred hcCCCCCeEeEccCCCeEEEEEeCccccccceEEEEEEEEcCChHHHHHHHHhhH---h-hcccchhhheeeeecCCCCe
Confidence 445789999996555555443 332222366899999999999999999998752 3 99999999999999999999
Q ss_pred EEEEEecCCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCC-CCCeeeEEEcceeEEEEecCCCCCCCCCccE
Q 006391 189 VVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPP-KSGYRRTKINPSTWEIRSLNLPMGSNGAKCL 267 (647)
Q Consensus 189 IvY~~~~p~~lp~~vs~RDFV~LRswRr~~dGsYvIa~~SV~Hp~~Pp-~~G~VRAei~~sGylI~P~~~~~~~~~~~~~ 267 (647)
|+|+++++.| |+++++||||++|+|++..+|.|+|+.+||+||.+|+ .+|+|||++..+||+|+|+++ +.|+
T Consensus 91 i~~~~~~~~~-~~p~~~RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~------~~~~ 163 (206)
T PF01852_consen 91 IVYFVMKSPW-PGPVSPRDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGD------GRTR 163 (206)
T ss_dssp EEEEEEE-CT-TTTSSEEEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETT------CEEE
T ss_pred EEEEEecccC-CCCCCCcEEEEEEEEEEeccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccC------CCce
Confidence 9999999765 5589999999999999988999999999999999999 999999999999999999986 4599
Q ss_pred EEEEEEEcCCCccccccCcccceehhhHHHHHHHHHHHHHHhhcCC
Q 006391 268 VTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGANP 313 (647)
Q Consensus 268 VT~I~qvDlkGw~~w~p~~~~~~~~~~~~~mL~~va~LRe~~~~~~ 313 (647)
||++.|+|++||+ |.|+.. ..+..++...+..+|+.++...
T Consensus 164 vt~~~~~D~~G~i---P~~~~n--~~~~~~~~~~~~~~~~~~~~~~ 204 (206)
T PF01852_consen 164 VTYVSQVDPKGWI---PSWLVN--MVVKSQPPNFLKNLRKALKKQK 204 (206)
T ss_dssp EEEEEEEESSSSS---HHHHHH--HHHHHHHHHHHHHHHHHHHHCC
T ss_pred EEEEEEECCCCCC---hHHHHH--HHHHHhHHHHHHHHHHHHHHhc
Confidence 9999999999999 543322 2233345567888888887643
No 22
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=99.95 E-value=6e-27 Score=234.32 Aligned_cols=180 Identities=17% Similarity=0.158 Sum_probs=150.9
Q ss_pred cCCCCEEEEEeCCeEEEEEecCCCCCcccEEEEEEee-cCCHHHHHHHHHccCCcccccccCCCCceEEEEeecC-ceeE
Q 006391 112 EAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVI-DASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDG-HYDV 189 (647)
Q Consensus 112 a~sgW~l~~~kngVrVf~~~~~~~~~~~~~~Ka~~vV-daspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE~iD~-~tDI 189 (647)
+.++|+++..++||+||++..+. +....+|+++++ ++|+++++++++|.+. |.+||.++.++++|++.++ +++|
T Consensus 19 ~~~~W~l~~~~~~i~Vy~r~~~~--s~~~~~k~~~~~~d~s~~~~~~~~~D~~~--r~~Wd~~~~~~~~le~~~~~~~~i 94 (207)
T cd08911 19 EPDGWEPFIEKKDMLVWRREHPG--TGLYEYKVYGSFDDVTARDFLNVQLDLEY--RKKWDATAVELEVVDEDPETGSEI 94 (207)
T ss_pred cCCCcEEEEEcCceEEEEeccCC--CCcEEEEEEEEEcCCCHHHHHHHHhCHHH--HHHHHhhheeEEEEEccCCCCCEE
Confidence 45689999999999999997653 445689999976 8999999999999986 9999999999999999755 8999
Q ss_pred EEEEecCCCCCCCCCCCeEEEEEEEEEc-CCCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCccEE
Q 006391 190 VYGTYDPKYLTRWQSKRDFVFSRQWFRG-QDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLV 268 (647)
Q Consensus 190 vY~~~~p~~lp~~vs~RDFV~LRswRr~-~dGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~~~V 268 (647)
+|+.++. |+++++||||+.|.|+.+ ++|.|+|+++||.||.+|+++||||+....|||+|+|.++. +.++|.+
T Consensus 95 ~y~~~~~---P~P~s~RD~V~~r~~~~~~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~---~~~~~~~ 168 (207)
T cd08911 95 IYWEMQW---PKPFANRDYVYVRRYIIDEENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSF---DEPGFEF 168 (207)
T ss_pred EEEEEEC---CCCCCCccEEEEEEEEEcCCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCC---CCCCeEE
Confidence 9999884 557999999999998876 45688999999999999999999999999999999998631 2256999
Q ss_pred EEEEEEcCCCccccccCcc-cceehhhHHHHHHHHHHHHH
Q 006391 269 TQMLEIHSSGWCRWKKNSS-TKFEKTTHFALLSQVAGLKE 307 (647)
Q Consensus 269 T~I~qvDlkGw~~w~p~~~-~~~~~~~~~~mL~~va~LRe 307 (647)
++..+.||+||+ |.|. +.+.+..+.. .+.+|++
T Consensus 169 ~~~~~~dPgG~I---P~~lvN~~~~~~~~~---~l~~l~~ 202 (207)
T cd08911 169 VLTYFDNPGVNI---PSYITSWVAMSGMPD---FLERLRN 202 (207)
T ss_pred EEEEEeCCCCcc---CHHHHHHHHHhhccH---HHHHHHH
Confidence 999999999999 5533 4444555444 4445543
No 23
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.94 E-value=1.9e-25 Score=215.37 Aligned_cols=154 Identities=34% Similarity=0.592 Sum_probs=142.5
Q ss_pred CCCEEEEEeCCeEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceeEEEEE
Q 006391 114 HEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGT 193 (647)
Q Consensus 114 sgW~l~~~kngVrVf~~~~~~~~~~~~~~Ka~~vVdaspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE~iD~~tDIvY~~ 193 (647)
.+|++..+++|+++|.+..+. .....+|+++.|++|+++|+++|.+.+. |++||+.+.++++|+++++++.|+|+.
T Consensus 15 ~~W~~~~~~~~v~vy~~~~~~--~~~~~~k~~~~i~~~~~~v~~~l~d~~~--~~~w~~~~~~~~vl~~~~~~~~i~~~~ 90 (193)
T cd00177 15 EGWKLVKEKDGVKIYTKPYED--SGLKLLKAEGVIPASPEQVFELLMDIDL--RKKWDKNFEEFEVIEEIDEHTDIIYYK 90 (193)
T ss_pred CCeEEEEECCcEEEEEecCCC--CCceeEEEEEEECCCHHHHHHHHhCCch--hhchhhcceEEEEEEEeCCCeEEEEEE
Confidence 489999999999999997653 3457999999999999999999999765 999999999999999999999999999
Q ss_pred ecCCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCccEEEEEEE
Q 006391 194 YDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLE 273 (647)
Q Consensus 194 ~~p~~lp~~vs~RDFV~LRswRr~~dGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~~~VT~I~q 273 (647)
++..| ++++||||+++++...++|.|+++.+|+.|+.+|+.+++|||.+..+||+|+|+++ ++|++||+++
T Consensus 91 ~~~p~---p~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~------~~~~vt~~~~ 161 (193)
T cd00177 91 TKPPW---PVSPRDFVYLRRRRKLDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDP------GKTKVTYVLQ 161 (193)
T ss_pred eeCCC---ccCCccEEEEEEEEEcCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCC------CCEEEEEEEe
Confidence 99654 59999999999999888789999999999999999999999999999999999954 6899999999
Q ss_pred EcCCCcc
Q 006391 274 IHSSGWC 280 (647)
Q Consensus 274 vDlkGw~ 280 (647)
+|++||+
T Consensus 162 ~D~~g~i 168 (193)
T cd00177 162 VDPKGSI 168 (193)
T ss_pred eCCCCCc
Confidence 9999999
No 24
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=99.94 E-value=7.4e-26 Score=226.58 Aligned_cols=175 Identities=20% Similarity=0.227 Sum_probs=145.7
Q ss_pred cCCCCEEEEEeCCeEEEEEecCCCCCcccEEEEEEeec-CCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceeEE
Q 006391 112 EAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVID-ASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVV 190 (647)
Q Consensus 112 a~sgW~l~~~kngVrVf~~~~~~~~~~~~~~Ka~~vVd-aspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE~iD~~tDIv 190 (647)
+.++|+++..++||+||++..+ ++....+|++++++ +++++++++|+|.+. |.+||.++.+ +++..+++++|+
T Consensus 23 ~~~~W~l~~~~~~i~Vy~r~~~--~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~--r~~Wd~~~~~--~~~~~~~~~~i~ 96 (207)
T cd08910 23 DGAAWELLVESSGISIYRLLDE--QSGLYEYKVFGVLEDCSPSLLADVYMDLEY--RKQWDQYVKE--LYEKECDGETVI 96 (207)
T ss_pred CCCCeEEEEecCCeEEEEeccC--CCCcEEEEEEEEEcCCCHHHHHHHHhCHHH--HHHHHHHHHh--heeecCCCCEEE
Confidence 4578999999999999999654 34556899999998 699999999999986 9999999986 788889899999
Q ss_pred EEEecCCCCCCCCCCCeEEEEEEEEEc-CCC--eEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCccE
Q 006391 191 YGTYDPKYLTRWQSKRDFVFSRQWFRG-QDG--TYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCL 267 (647)
Q Consensus 191 Y~~~~p~~lp~~vs~RDFV~LRswRr~-~dG--sYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~~~ 267 (647)
|+.++. |+++++||||++|+++.. .+| .++|+++|+.||.+|+++||||+....++|+|+|.++ ++|+
T Consensus 97 y~~~k~---PwPvs~RD~V~~r~~~~~~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~------~~t~ 167 (207)
T cd08910 97 YWEVKY---PFPLSNRDYVYIRQRRDLDVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGK------KGSK 167 (207)
T ss_pred EEEEEc---CCCCCCceEEEEEEeccccCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCC------CceE
Confidence 999985 457999999999988753 233 4788999999999999999999999999999999864 5799
Q ss_pred EEEEEEEcCCCccccccCcc-cceehhhHHHHHHHHHHHHH
Q 006391 268 VTQMLEIHSSGWCRWKKNSS-TKFEKTTHFALLSQVAGLKE 307 (647)
Q Consensus 268 VT~I~qvDlkGw~~w~p~~~-~~~~~~~~~~mL~~va~LRe 307 (647)
++|+.+.||+|++ |.|. |.+.+..+. ..+.+||+
T Consensus 168 i~~~~~~DPgG~I---P~wlvN~~~~~~~~---~~l~~l~k 202 (207)
T cd08910 168 VFMYYFDNPGGMI---PSWLINWAAKNGVP---NFLKDMQK 202 (207)
T ss_pred EEEEEEeCCCCcc---hHHHHHHHHHHhhH---HHHHHHHH
Confidence 9999999999999 5433 344344433 35555554
No 25
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.93 E-value=6e-25 Score=215.77 Aligned_cols=179 Identities=21% Similarity=0.276 Sum_probs=151.2
Q ss_pred cccCCCCEEEEEeCCeEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceeE
Q 006391 110 AIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDV 189 (647)
Q Consensus 110 ~~a~sgW~l~~~kngVrVf~~~~~~~~~~~~~~Ka~~vVdaspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE~iD~~tDI 189 (647)
+..+.+|+++.+++|++||+++.+. +....+|++++|+++|++||+++.|.+. |++||+.+.++++||+++++.++
T Consensus 13 ~~~~~~W~~~~~~~~v~v~~~~~~~--~~~~~~k~~~~i~~s~e~v~~vi~d~e~--~~~w~~~~~~~~vie~~~~~~~i 88 (195)
T cd08876 13 LAPDGDWQLVKDKDGIKVYTRDVEG--SPLKEFKAVAEVDASIEAFLALLRDTES--YPQWMPNCKESRVLKRTDDNERS 88 (195)
T ss_pred cCCCCCCEEEecCCCeEEEEEECCC--CCeEEEEEEEEEeCCHHHHHHHHhhhHh--HHHHHhhcceEEEeecCCCCcEE
Confidence 3345569999999999999997642 3347899999999999999999999987 99999999999999999998999
Q ss_pred EEEEecCCCCCCCCCCCeEEEEEEEEEcC-CCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCccEE
Q 006391 190 VYGTYDPKYLTRWQSKRDFVFSRQWFRGQ-DGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLV 268 (647)
Q Consensus 190 vY~~~~p~~lp~~vs~RDFV~LRswRr~~-dGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~~~V 268 (647)
+|..++.. +++++||||+.+.++... +|.++|...|+.|+ +|+.+||||+....+||.|+|+++ ++|+|
T Consensus 89 ~~~~~~~p---~pvs~Rdfv~~~~~~~~~~~~~~~i~~~s~~~~-~P~~~~~vR~~~~~~~~~i~~~~~------~~t~v 158 (195)
T cd08876 89 VYTVIDLP---WPVKDRDMVLRSTTEQDADDGSVTITLEAAPEA-LPEQKGYVRIKTVEGQWTFTPLGN------GKTRV 158 (195)
T ss_pred EEEEEecc---cccCCceEEEEEEEEEcCCCCEEEEEeecCCcc-CCCCCCeEEceeceeeEEEEECCC------CeEEE
Confidence 99998854 459999999998887754 78999999999998 899999999999999999999975 57999
Q ss_pred EEEEEEcCCCccccccCcc-cceehhhHHHHHHHHHHHHHH
Q 006391 269 TQMLEIHSSGWCRWKKNSS-TKFEKTTHFALLSQVAGLKEY 308 (647)
Q Consensus 269 T~I~qvDlkGw~~w~p~~~-~~~~~~~~~~mL~~va~LRe~ 308 (647)
||++++|++||+ |.+. +.+.+.. +...+++||+.
T Consensus 159 t~~~~~dp~g~i---P~~lv~~~~~~~---~~~~l~~l~~~ 193 (195)
T cd08876 159 TYQAYADPGGSI---PGWLANAFAKDA---PYNTLENLRKQ 193 (195)
T ss_pred EEEEEeCCCCCC---CHHHHHHHHHHH---HHHHHHHHHHh
Confidence 999999999999 6544 3333333 33566677664
No 26
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=99.92 E-value=2.4e-24 Score=215.52 Aligned_cols=178 Identities=15% Similarity=0.159 Sum_probs=150.3
Q ss_pred CCCEEEEEeCC----eEEEEEecCCCCCcccEEEEEEee-cCCHHHHHHHHHccCCcccccccCCCCceEEEEeecC-ce
Q 006391 114 HEWKCVRTLNG----VRIFEDVADSKSGRGVLVKAVGVI-DASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDG-HY 187 (647)
Q Consensus 114 sgW~l~~~kng----VrVf~~~~~~~~~~~~~~Ka~~vV-daspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE~iD~-~t 187 (647)
.+|+++..++| ++||++..+. .....+|+++++ ++|++.++++|+|.+. |++||.++.++++|+..++ ++
T Consensus 22 ~~W~~~~~k~~~~~~i~vy~r~~~~--s~~~~~k~~~~~~~~s~~~~~~~l~D~~~--r~~Wd~~~~~~~~le~~~~~~~ 97 (209)
T cd08870 22 QAWQQVMDKSTPDMSYQAWRRKPKG--TGLYEYLVRGVFEDCTPELLRDFYWDDEY--RKKWDETVIEHETLEEDEKSGT 97 (209)
T ss_pred CcceEhhhccCCCceEEEEecccCC--CCceEEEEEEEEcCCCHHHHHHHHcChhh--HhhhhhheeeEEEEEecCCCCc
Confidence 68999999999 9999997642 345789999999 5699999999999886 9999999999999999655 58
Q ss_pred eEEEEEecCCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCccE
Q 006391 188 DVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCL 267 (647)
Q Consensus 188 DIvY~~~~p~~lp~~vs~RDFV~LRswRr~~dGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~~~ 267 (647)
+|+|++++. |+++++||||+.|.++...+|.++|..+|+.||.+|+. |+||+....++|+|+|++. ++++|.
T Consensus 98 ~i~y~~~~~---P~P~s~RD~V~~r~~~~~~~~~~~i~~~sv~~~~~P~~-~~vRv~~~~~~~~i~p~~~----~~~~t~ 169 (209)
T cd08870 98 EIVRWVKKF---PFPLSDREYVIARRLWESDDRSYVCVTKGVPYPSVPRS-GRKRVDDYESSLVIRAVKG----DGQGSA 169 (209)
T ss_pred EEEEEEEEC---CCcCCCceEEEEEEEEEcCCCEEEEEEeCCcCCCCCCC-CcEEEEEEEeEEEEEEecC----CCCceE
Confidence 999999984 55799999999999888778899999999999999999 9999999999999999952 236799
Q ss_pred EEEEEEEcCCCccccccCcc-cceehhhHHHHHHHHHHHHHHh
Q 006391 268 VTQMLEIHSSGWCRWKKNSS-TKFEKTTHFALLSQVAGLKEYI 309 (647)
Q Consensus 268 VT~I~qvDlkGw~~w~p~~~-~~~~~~~~~~mL~~va~LRe~~ 309 (647)
+++..+.|++|++ |.|. +.+.+.. +...+.+||+-+
T Consensus 170 ~~~~~~~dp~G~I---P~wlvN~~~~~~---~~~~l~~l~~a~ 206 (209)
T cd08870 170 CEVTYFHNPDGGI---PRELAKLAVKRG---MPGFLKKLENAL 206 (209)
T ss_pred EEEEEEECCCCCC---CHHHHHHHHHhh---hHHHHHHHHHHH
Confidence 9999999999999 5544 3333333 345667777654
No 27
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.89 E-value=2.5e-22 Score=201.53 Aligned_cols=182 Identities=18% Similarity=0.189 Sum_probs=152.8
Q ss_pred ccccccCCCCEEEEEeCCeEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCc
Q 006391 107 IGDAIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGH 186 (647)
Q Consensus 107 ~~~~~a~sgW~l~~~kngVrVf~~~~~~~~~~~~~~Ka~~vVdaspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE~iD~~ 186 (647)
.+++-+..+|++...++|++||.+.... +....+|++++|+++++.++.+|.+.+. +++|++.+.+.++|++++.+
T Consensus 15 ~~~l~~~~~W~~~~~~~~i~v~~r~~~~--~~~~~~k~e~~i~~~~~~~~~vl~d~~~--~~~W~p~~~~~~~l~~~~~~ 90 (215)
T cd08877 15 LKDLDESDGWTLQKESEGIRVYYKFEPD--GSLLSLRMEGEIDGPLFNLLALLNEVEL--YKTWVPFCIRSKKVKQLGRA 90 (215)
T ss_pred HhcccCCCCcEEeccCCCeEEEEEeCCC--CCEEEEEEEEEecCChhHeEEEEehhhh--HhhhcccceeeEEEeecCCc
Confidence 3566668899999999999999986642 3357999999999999999999999876 99999999999999999999
Q ss_pred eeEEEEEecCCCCCCCCCCCeEEEEEEEE-Ec-CCCeEEEEEeeccCCC---------CCCCC-CeeeEEEcceeEEEEe
Q 006391 187 YDVVYGTYDPKYLTRWQSKRDFVFSRQWF-RG-QDGTYTILQFPAVHKK---------RPPKS-GYRRTKINPSTWEIRS 254 (647)
Q Consensus 187 tDIvY~~~~p~~lp~~vs~RDFV~LRswR-r~-~dGsYvIa~~SV~Hp~---------~Pp~~-G~VRAei~~sGylI~P 254 (647)
+.|+|+.++. |+++++||+|+..... .. ++|.++|+.+|+.|+. +|+.+ |+||++...+||+|+|
T Consensus 91 ~~v~y~~~~~---PwPv~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p 167 (215)
T cd08877 91 DKVCYLRVDL---PWPLSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITP 167 (215)
T ss_pred eEEEEEEEeC---ceEecceEEEEEEEEEeeeccCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEE
Confidence 9999999885 5579999999853322 22 7899999999999876 79999 9999999999999999
Q ss_pred cCCCCCCCCCccEEEEEEEEcCCCc-cccccCcc-cceehhhHHHHHHHHHH
Q 006391 255 LNLPMGSNGAKCLVTQMLEIHSSGW-CRWKKNSS-TKFEKTTHFALLSQVAG 304 (647)
Q Consensus 255 ~~~~~~~~~~~~~VT~I~qvDlkGw-~~w~p~~~-~~~~~~~~~~mL~~va~ 304 (647)
+++ ++|.++++.++||+|+ + |.|. +.+.+.++..++..+.+
T Consensus 168 ~~~------~~t~v~~~~~~DP~g~~I---P~~liN~~~k~~~~~~~~~l~k 210 (215)
T cd08877 168 ISP------TKCYLRFVANVDPKMSLV---PKSLLNFVARKFAGLLFEKIQK 210 (215)
T ss_pred cCC------CCeEEEEEEEcCCCcccC---CHHHHHHHHHHHHHHHHHHHHH
Confidence 986 6899999999999999 8 5543 55556666665544443
No 28
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=99.84 E-value=5.3e-20 Score=183.07 Aligned_cols=162 Identities=22% Similarity=0.340 Sum_probs=141.0
Q ss_pred cccCCCCEEEEEeCCeEEEEEecCCCCCcccEEEEEEee-cCCHHHHHHHHHccCCcccccccCCCCceEEEEeec-Cce
Q 006391 110 AIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVI-DASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYD-GHY 187 (647)
Q Consensus 110 ~~a~sgW~l~~~kngVrVf~~~~~~~~~~~~~~Ka~~vV-daspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE~iD-~~t 187 (647)
+-+..+|+++..++++.||...... .+ ...+|+.++. |+||+.++++++|.+. |++||.++.+.++||... -++
T Consensus 25 ~~~~~~We~~~~k~~~~i~~q~~~~-~g-~~~Yk~~~vfeDvtp~~~~Dv~~D~eY--RkkWD~~vi~~e~ie~d~~tg~ 100 (219)
T KOG2761|consen 25 CDAGQGWELVMDKSTPSIWRQRRPK-TG-LYEYKSRTVFEDVTPEIVRDVQWDDEY--RKKWDDMVIELETIEEDPVTGT 100 (219)
T ss_pred cCcccchhhhcccCCceEEEEcccC-CC-CEEEEEEEEEcCCCHHHHHHHHhhhHH--HHHHHHHhhhheeeeecCCCCc
Confidence 5567799999999999999943321 22 5789999976 5899999999999987 999999999999999986 577
Q ss_pred eEEEEEecCCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEE-ecCCCCCCCCCcc
Q 006391 188 DVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIR-SLNLPMGSNGAKC 266 (647)
Q Consensus 188 DIvY~~~~p~~lp~~vs~RDFV~LRswRr~~dGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~-P~~~~~~~~~~~~ 266 (647)
+|+|++.+ +|.++++||||++|.|...++..|+|+++||.||+.||.+++||+.+.-+||+|+ +... .+++.|
T Consensus 101 ~vv~w~~k---fP~p~~~RdYV~~Rr~~~~~~k~~~i~s~~v~h~s~P~~~~~vRv~~~~s~~~I~~~~~~---~~~~~~ 174 (219)
T KOG2761|consen 101 EVVYWVKK---FPFPMSNRDYVYVRRWWESDEKDYYIVSKSVQHPSYPPLKKKVRVTVYRSGWLIRVESRS---GDEQGC 174 (219)
T ss_pred eEEEEEEe---CCcccCCccEEEEEEEEecCCceEEEEEecccCCCcCCcCCcEEEEEEEEEEEEEccccc---CCCCcc
Confidence 99999988 5678999999999999887646799999999999999999999999999999999 5543 245789
Q ss_pred EEEEEEEEcCCCccc
Q 006391 267 LVTQMLEIHSSGWCR 281 (647)
Q Consensus 267 ~VT~I~qvDlkGw~~ 281 (647)
.+.++...|++|-++
T Consensus 175 ~~~~~~~~~p~~~iP 189 (219)
T KOG2761|consen 175 ACEYLYFHNPGGGIP 189 (219)
T ss_pred EEEEEEEECCCCCCc
Confidence 999999999999993
No 29
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=99.55 E-value=1.1e-13 Score=140.50 Aligned_cols=134 Identities=15% Similarity=0.212 Sum_probs=114.4
Q ss_pred CcccEEEEEEeecCCHHHHHHHHHccCCccccc-ccCCCCceEEEEeecCc--------eeEEEEEecCCCCCCCCCCCe
Q 006391 137 GRGVLVKAVGVIDASADTVFEVVLNLERHQRYE-WDMLTGDLELVDSYDGH--------YDVVYGTYDPKYLTRWQSKRD 207 (647)
Q Consensus 137 ~~~~~~Ka~~vVdaspe~Vfe~L~d~~~~~R~~-WD~~~~~~evVE~iD~~--------tDIvY~~~~p~~lp~~vs~RD 207 (647)
..+-+-|++++|...|..+.+.|+|..+ ..+ .+..+...++++.|+.. ..++|..++... .++++||
T Consensus 57 ~~~eASR~~glV~m~~~~lVe~lmD~~k--W~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pS--pLVp~Re 132 (229)
T cd08875 57 FTTEASRACGLVMMNAIKLVEILMDVNK--WSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPS--PLVPTRE 132 (229)
T ss_pred CeEEEEeeeEEEecCHHHHHHHHhChhh--hhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCc--ccccCCe
Confidence 3445679999999999999999998543 222 34488899999999544 678998888542 4899999
Q ss_pred EEEEEEEEEcCCCeEEEEEeeccCC-CCCCCCCeeeEEEcceeEEEEecCCCCCCCCCccEEEEEEEEcCCCcc
Q 006391 208 FVFSRQWFRGQDGTYTILQFPAVHK-KRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 280 (647)
Q Consensus 208 FV~LRswRr~~dGsYvIa~~SV~Hp-~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~~~VT~I~qvDlkGw~ 280 (647)
|++|||....+||+++|+-+|++|. ..|+.++++|++.++|||+|+|+++ +.|+||||-|+|..-|.
T Consensus 133 ~~fLRyc~~l~dG~w~VvdvSld~~~~~p~~~~~~r~~~~PSGcLIq~~~n------G~SkVtwVeH~e~d~~~ 200 (229)
T cd08875 133 FYFLRYCKQLEDGLWAVVDVSIDGVQTAPPPASFVRCRRLPSGCLIQDMPN------GYSKVTWVEHVEVDEKP 200 (229)
T ss_pred EEEEEEEEEeCCCeEEEEEEeecccccCCCCCCccEEEEecCcEEEEECCC------CceEEEEEEEEeccCCc
Confidence 9999999999999999999999998 6888899999999999999999996 57999999999998874
No 30
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=99.50 E-value=2.6e-14 Score=154.15 Aligned_cols=167 Identities=17% Similarity=0.323 Sum_probs=139.1
Q ss_pred ccccCCCCEEEEEeCCeEEEEEecCCCCCcccEEEEEEeec-CCHHHHHHHHHccCCcccccccCCCCceEEEEeecCce
Q 006391 109 DAIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVID-ASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHY 187 (647)
Q Consensus 109 ~~~a~sgW~l~~~kngVrVf~~~~~~~~~~~~~~Ka~~vVd-aspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE~iD~~t 187 (647)
++.....|+++...+.+++|+++.+..+-..-..|+...|. +++.++++++++.+. |.+|+.+++.+.|||+|.+++
T Consensus 398 ~~g~d~nwqlFaeegemkmy~re~eeng~~~Dplka~hav~gvta~e~chyf~~~~~--rndwettle~~~vve~is~d~ 475 (611)
T KOG1739|consen 398 DVGGDANWQLFAEEGEMKMYRREVEENGIVLDPLKATHAVKGVTAHEVCHYFWNVDV--RNDWETTLENFHVVETISDDA 475 (611)
T ss_pred cccccchhhhhcccCCccccceeeccCCcccCccccchhhcchhHHHHHHHHcChhh--hcchhhhhhhceeeeeecCCe
Confidence 34445669999999999999997765444445678876554 599999999999987 999999999999999999999
Q ss_pred eEEEEEecCCCCCCCCCCCeEEEEEEEEEc----CC--CeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCC
Q 006391 188 DVVYGTYDPKYLTRWQSKRDFVFSRQWFRG----QD--GTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGS 261 (647)
Q Consensus 188 DIvY~~~~p~~lp~~vs~RDFV~LRswRr~----~d--GsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~ 261 (647)
-|+|++.|..| +.++||-.++.+.|+- ++ +.|++|++||.|.+.|-...+||+.+..+.-+-.-++++.++
T Consensus 476 ~~~~qthkrvw---pasqrd~lf~shirki~~~~e~gad~wivcn~s~~~a~~pl~n~cvr~~ltv~micqt~v~~p~~~ 552 (611)
T KOG1739|consen 476 IIIYQTHKRVW---PASQRDVLFLSHIRKIPALTENGADTWIVCNFSVDHASAPLNNRCVRAKLTVAMICQTLVSPPEGN 552 (611)
T ss_pred EEEEecccccC---CCCcchhHHHHHHhhcccccCCCCceEEEecCccccccCccCCceEEEeeeeeeeeecccCCcccC
Confidence 99999999887 6999999999999872 23 479999999999999999999999987776655555443222
Q ss_pred -----CCCccEEEEEEEEcCCCcc
Q 006391 262 -----NGAKCLVTQMLEIHSSGWC 280 (647)
Q Consensus 262 -----~~~~~~VT~I~qvDlkGw~ 280 (647)
+.-.|++||+.+++|+||.
T Consensus 553 q~l~rdd~~ckityvs~vnpggwa 576 (611)
T KOG1739|consen 553 QELSRDDILCKITYVSNVNPGGWA 576 (611)
T ss_pred CcccccceeEEEEEEeeeCCCCcc
Confidence 2248999999999999999
No 31
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=99.11 E-value=9.5e-10 Score=110.85 Aligned_cols=132 Identities=19% Similarity=0.076 Sum_probs=97.1
Q ss_pred cccccCCCC--ceEEEEeecCce----eEEEEEecCCCCCCCCCCCeEEEEEE-EEEcC-CCeEEEEEeeccCCCCC-CC
Q 006391 167 RYEWDMLTG--DLELVDSYDGHY----DVVYGTYDPKYLTRWQSKRDFVFSRQ-WFRGQ-DGTYTILQFPAVHKKRP-PK 237 (647)
Q Consensus 167 R~~WD~~~~--~~evVE~iD~~t----DIvY~~~~p~~lp~~vs~RDFV~LRs-wRr~~-dGsYvIa~~SV~Hp~~P-p~ 237 (647)
-.+|-..+. ++++|+..++.. .|+|+.++ +|+++++|||+.+.. ....+ ...++++..++.|+.+| +.
T Consensus 65 E~~~i~~v~~~~~~~l~~~~~~~~~~~~v~~~~~~---~P~Pl~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~~~p~~~ 141 (208)
T cd08864 65 EKEYVHEIGAYDLEPVEVDGEGDGVVTYLVQLTYK---FPFPLSPRVFNELVHIKSDLDPASEFMVVSLPITPPLVESLY 141 (208)
T ss_pred hhhchhhhccceeEEeeecCCCccceEEEEEEEEE---CCCCCCCcEEEEEEEeeccCCCCCeEEEEEEEecCCcCCccC
Confidence 457999999 899999998665 88898888 566899999999988 33333 14689999999999999 89
Q ss_pred CCeeeEEEcceeEEEEecCCCCCCCCCccEEEEEE--EEcCCCccccccCcccceehhhHHHHHHHHHHHHHHhh
Q 006391 238 SGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQML--EIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIG 310 (647)
Q Consensus 238 ~G~VRAei~~sGylI~P~~~~~~~~~~~~~VT~I~--qvDlkGw~~w~p~~~~~~~~~~~~~mL~~va~LRe~~~ 310 (647)
+|||||. ..+|..|+.++.. ....+.|+|++ +.|++|++ |.|... ..+..++..-|..+=+|+.
T Consensus 142 ~~~Vr~~-y~SgE~~~~~p~~---~~~~~~vew~maT~sDpGG~I---P~wl~n--~~~p~aI~~Dv~~fl~W~~ 207 (208)
T cd08864 142 ENAVLGR-YASVEKISYLPDA---DGKSNKVEWIMATRSDAGGNI---PRWLTK--LTIPKAIAKDVPLFLDWID 207 (208)
T ss_pred CCcEEEE-EEEEEEEEEcCcc---CCCcCCEEEEEEEeeCCCCcC---cHHHHh--ccCchHHHHhHHHHHHHhc
Confidence 9999999 7888777765531 01345677777 99999999 554432 2344444445666655543
No 32
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=98.09 E-value=7.7e-07 Score=99.36 Aligned_cols=92 Identities=16% Similarity=0.131 Sum_probs=82.0
Q ss_pred CCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCccEEEEEEEEcCCCccc
Q 006391 202 WQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCR 281 (647)
Q Consensus 202 ~vs~RDFV~LRswRr~~dGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~~~VT~I~qvDlkGw~~ 281 (647)
+++.|||+++| |.|+++..||+|...++-.| |||.+..+.|+|+|++. .+++|+||+.+|+||..
T Consensus 575 ph~~~~~~ViR-------gacv~a~~svk~~~a~~l~~-vrA~~~~~r~liep~g~------g~sr~~~i~r~dlkg~~- 639 (674)
T KOG2200|consen 575 PHPSRDFGVIR-------GACVLAPLSVKVSMAIQLGG-VRATVLDSRFLIEPCGG------GQSRVTHICRVDLKGRS- 639 (674)
T ss_pred CCCCCCceeee-------eeeeecccccchhhhhhhcc-chhhhhhhhhhccccCC------cchhhhhhhhhhcccCC-
Confidence 57899999999 88999999999977777767 99999999999999986 57899999999999999
Q ss_pred cccCcccceehhhHHHHHHHHHHHHHHhhcCC
Q 006391 282 WKKNSSTKFEKTTHFALLSQVAGLKEYIGANP 313 (647)
Q Consensus 282 w~p~~~~~~~~~~~~~mL~~va~LRe~~~~~~ 313 (647)
+.||++-.+|++.. .++.+|+.|....
T Consensus 640 --~~wy~k~fg~~c~~---~~~~~r~sf~~~~ 666 (674)
T KOG2200|consen 640 --PEWYNKSFGHLCCL---EVARIRDSFHTLQ 666 (674)
T ss_pred --chhhhccccchhhh---hhcccchhhcccc
Confidence 89999999998764 8889999887543
No 33
>PF11274 DUF3074: Protein of unknown function (DUF3074)
Probab=98.06 E-value=0.00013 Score=72.63 Aligned_cols=147 Identities=20% Similarity=0.219 Sum_probs=98.3
Q ss_pred cCCHHHHHHHHHccCCcccccccCCCCceEEEEee----------cCceeEEEEEecCCCCCCCCCCCeEEEEEEEEEcC
Q 006391 149 DASADTVFEVVLNLERHQRYEWDMLTGDLELVDSY----------DGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQ 218 (647)
Q Consensus 149 daspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE~i----------D~~tDIvY~~~~p~~lp~~vs~RDFV~LRswRr~~ 218 (647)
.++-++.-..|.+.-...-.++-+.+...+.|++. +....|++..++ +|++.++|||+.|.......
T Consensus 13 ~~~~~~~~~~L~~~h~e~E~~yi~~i~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~k---fp~pl~~R~F~~Lvit~~~~ 89 (184)
T PF11274_consen 13 GASFDEFRKGLKDEHSENEKEYIPGIGSVERLERWDVDDGGGGWGDGTMEVWQLSYK---FPGPLSPRVFVVLVITADLP 89 (184)
T ss_pred CCCHHHHHHHHHhhhHHHHHHhccccceEEEEEEeccccCCcccccceEEEEEEEeE---CCCCCCCcEEEEEEEEeccC
Confidence 45666666666543110234678888999999998 566677777766 57799999999998877543
Q ss_pred ---------CCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCccEEEEEEE--EcCCCccccccCcc
Q 006391 219 ---------DGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLE--IHSSGWCRWKKNSS 287 (647)
Q Consensus 219 ---------dGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~~~VT~I~q--vDlkGw~~w~p~~~ 287 (647)
...++|++..+.|+.+|+.+|+|||.-. |==.|+.++... ++...-.|.|++- .|++|++ |.|.
T Consensus 90 ~~~~~~~~~~~~f~vVs~P~~~~~~~~~~~~V~g~Y~-SVE~ire~p~~~-~~~~~~~veW~MaT~SdaGG~I---P~w~ 164 (184)
T PF11274_consen 90 SKTEDDSTGPREFMVVSIPVDHPDSPPRKGYVRGQYE-SVERIRELPDTK-DDDEEGPVEWIMATRSDAGGSI---PRWM 164 (184)
T ss_pred ccccCCCCCCCeEEEEEEEcCCcccCCCCCCEEEEEE-EEEEEEEccCCC-CCCCCCcEEEEEEEeeCCCCcc---cHHH
Confidence 2479999999999999999999999753 333455553210 0112345666555 5999999 6655
Q ss_pred cceehhhHHHHHHHHHHH
Q 006391 288 TKFEKTTHFALLSQVAGL 305 (647)
Q Consensus 288 ~~~~~~~~~~mL~~va~L 305 (647)
... .+..++..-|..+
T Consensus 165 q~~--~~p~~Ia~DV~~f 180 (184)
T PF11274_consen 165 QEM--GTPGAIAKDVPKF 180 (184)
T ss_pred Hhc--cCcHHHHHHHHHH
Confidence 432 4444444444444
No 34
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=98.01 E-value=6.9e-05 Score=69.37 Aligned_cols=110 Identities=15% Similarity=0.086 Sum_probs=80.3
Q ss_pred EEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceeEEEEEecCCCCCCCCCCCeEEEEEEEEEcCCCeE
Q 006391 143 KAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTY 222 (647)
Q Consensus 143 Ka~~vVdaspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE~iD~~tDIvY~~~~p~~lp~~vs~RDFV~LRswRr~~dGsY 222 (647)
+.+..|++|+++||++|.|.+. .++|.+.+.++++++.-+.. ..++..+.. +...++|+....+ ..+..
T Consensus 2 ~~s~~i~ap~~~v~~~i~D~~~--~~~~~p~~~~~~vl~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~--~~~~~- 70 (138)
T cd07813 2 SKSRLVPYSAEQMFDLVADVER--YPEFLPWCTASRVLERDEDE-LEAELTVGF-----GGIRESFTSRVTL--VPPES- 70 (138)
T ss_pred eEEEEcCCCHHHHHHHHHHHHh--hhhhcCCccccEEEEcCCCE-EEEEEEEee-----ccccEEEEEEEEe--cCCCE-
Confidence 4567899999999999999976 89999999999999988744 455554441 2346788754433 23332
Q ss_pred EEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCccEEEEEEEEcCCCcc
Q 006391 223 TILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 280 (647)
Q Consensus 223 vIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~~~VT~I~qvDlkGw~ 280 (647)
|...++.. +-...-+.|.++|+++ ++|+|+|-++.+++|.+
T Consensus 71 -i~~~~~~g----------~~~~~~g~w~~~p~~~------~~T~v~~~~~~~~~~~l 111 (138)
T cd07813 71 -IEAELVDG----------PFKHLEGEWRFKPLGE------NACKVEFDLEFEFKSRL 111 (138)
T ss_pred -EEEEecCC----------ChhhceeEEEEEECCC------CCEEEEEEEEEEECCHH
Confidence 35555543 1122457999999985 57999999999999987
No 35
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.93 E-value=0.00023 Score=65.95 Aligned_cols=142 Identities=14% Similarity=0.062 Sum_probs=82.2
Q ss_pred EEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceeEEEEEecCCCCCCCCCCCeEEEEEEEEEcCCCeE
Q 006391 143 KAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTY 222 (647)
Q Consensus 143 Ka~~vVdaspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE~iD~~tDIvY~~~~p~~lp~~vs~RDFV~LRswRr~~dGsY 222 (647)
+++..|++||++||++|.|.+. .++|.+.+.++++++.-++. ..+|+......+ ..+-+.-+.++. ...++...
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~--~~~w~p~v~~~~~l~~~~~~-~~~~~~~~~~~~--~~~~~~~v~~~~-~~~~~~~~ 75 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDN--LAEFIPNLAESRLLERNGNR-VVLEQTGKQGIL--FFKFEARVVLEL-REREEFPR 75 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhh--HHhhCcCceEEEEEEcCCCE-EEEEEeeeEEEE--eeeeeEEEEEEE-EEecCCCc
Confidence 6788999999999999999976 88999999999999885443 334443111000 000001111111 11111011
Q ss_pred EEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCccEEEEEEEEcCCCccccccCcccceehhhHHHHHHHH
Q 006391 223 TILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQV 302 (647)
Q Consensus 223 vIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~~~VT~I~qvDlkGw~~w~p~~~~~~~~~~~~~mL~~v 302 (647)
.+..+.+..+ + ...-+.|.++|.++ +++|+|+|-.++++++.+ |.+. ...-+...+...+
T Consensus 76 ~i~~~~~~g~--------~--~~~~g~w~~~~~~~-----~~~t~v~~~~~~~~~~~~---p~~l--~~~~~~~~~~~~l 135 (144)
T cd08866 76 ELDFEMVEGD--------F--KRFEGSWRLEPLAD-----GGGTLLTYEVEVKPDFFA---PVFL--VEFVLRQDLPTNL 135 (144)
T ss_pred eEEEEEcCCc--------h--hceEEEEEEEECCC-----CCeEEEEEEEEEEeCCCC---CHHH--HHHHHHHHHHHHH
Confidence 2222222111 1 23457899999874 147999999999999988 5422 1222333344566
Q ss_pred HHHHHHhh
Q 006391 303 AGLKEYIG 310 (647)
Q Consensus 303 a~LRe~~~ 310 (647)
++||+..+
T Consensus 136 ~~lr~~ae 143 (144)
T cd08866 136 LAIRAEAE 143 (144)
T ss_pred HHHHHHHh
Confidence 77776543
No 36
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.55 E-value=0.0021 Score=58.60 Aligned_cols=134 Identities=13% Similarity=0.044 Sum_probs=81.8
Q ss_pred EEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCc-eeEEEEEecCCCCCCCCCCCeEEEEEEEEEcCCC
Q 006391 142 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGH-YDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDG 220 (647)
Q Consensus 142 ~Ka~~vVdaspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE~iD~~-tDIvY~~~~p~~lp~~vs~RDFV~LRswRr~~dG 220 (647)
+.....|++||++||++|.|.+. .++|.+.+.++++++.-+.. ....+..+... ..+. +|+. +. ...+.
T Consensus 4 v~~s~~i~ap~e~V~~~l~D~~~--~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~-~~-~~~~~- 73 (140)
T cd07819 4 VSREFEIEAPPAAVMDVLADVEA--YPEWSPKVKSVEVLLRDNDGRPEMVRIGVGAY----GIKD-TYAL-EY-TWDGA- 73 (140)
T ss_pred EEEEEEEeCCHHHHHHHHhChhh--hhhhCcceEEEEEeccCCCCCEEEEEEEEeee----eEEE-EEEE-EE-EEcCC-
Confidence 55667899999999999999986 89999999999988665432 23444433211 1211 3432 22 22222
Q ss_pred eEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCccEEEEEEEEcCCCccccccCccc-ceehhhHHHHH
Q 006391 221 TYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSST-KFEKTTHFALL 299 (647)
Q Consensus 221 sYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~~~VT~I~qvDlkGw~~w~p~~~~-~~~~~~~~~mL 299 (647)
..|..+++... +.....+.|.++|.++ .|+|+|-.+.+++|.+ |.+.- .+.+.+. .
T Consensus 74 -~~i~~~~~~~~---------~~~~~~~~~~~~~~~~-------~t~vt~~~~~~~~~~~---~~~~~~~~~~~~~---~ 130 (140)
T cd07819 74 -GSVSWTLVEGE---------GNRSQEGSYTLTPKGD-------GTRVTFDLTVELTVPL---PGFLKRKAEPLVL---D 130 (140)
T ss_pred -CcEEEEEeccc---------ceeEEEEEEEEEECCC-------CEEEEEEEEEEecCCC---CHHHHHHhhhHHH---H
Confidence 22444544331 1222335799999863 5999999999999988 55332 2222222 3
Q ss_pred HHHHHHHHH
Q 006391 300 SQVAGLKEY 308 (647)
Q Consensus 300 ~~va~LRe~ 308 (647)
..+.+||++
T Consensus 131 ~~~~~l~~~ 139 (140)
T cd07819 131 EALKGLKKR 139 (140)
T ss_pred HHHHhHhhh
Confidence 456666654
No 37
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.21 E-value=0.0053 Score=56.23 Aligned_cols=114 Identities=10% Similarity=-0.143 Sum_probs=69.9
Q ss_pred EEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceeEEEEEecCCCCCCCCCCCeEEEEEEEEEcCCCe
Q 006391 142 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGT 221 (647)
Q Consensus 142 ~Ka~~vVdaspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE~iD~~tDIvY~~~~p~~lp~~vs~RDFV~LRswRr~~dGs 221 (647)
++.+..+++||++||++|.|.+. ..+|.+.+.+.++++ ++.-.++...+. ++.+.|.-...+.....++..
T Consensus 3 ~~~~~~i~a~~e~v~~~l~D~~~--~~~w~p~~~~~~~~~---~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 73 (144)
T cd05018 3 ISGEFRIPAPPEEVWAALNDPEV--LARCIPGCESLEKIG---PNEYEATVKLKV----GPVKGTFKGKVELSDLDPPES 73 (144)
T ss_pred eeeEEEecCCHHHHHHHhcCHHH--HHhhccchhhccccC---CCeEEEEEEEEE----ccEEEEEEEEEEEEecCCCcE
Confidence 56777899999999999999976 789999888766543 343334443331 123333322223222233334
Q ss_pred EEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCccEEEEEEEEcCCCcc
Q 006391 222 YTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 280 (647)
Q Consensus 222 YvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~~~VT~I~qvDlkGw~ 280 (647)
|.+-.... .+ .+.....+-|.++|.+ ++|+|+|-.+++++|.+
T Consensus 74 ~~~~~~~~-~~--------~~~~~~~~~~~l~~~~-------~gT~v~~~~~~~~~g~l 116 (144)
T cd05018 74 YTITGEGK-GG--------AGFVKGTARVTLEPDG-------GGTRLTYTADAQVGGKL 116 (144)
T ss_pred EEEEEEEc-CC--------CceEEEEEEEEEEecC-------CcEEEEEEEEEEEccCh
Confidence 44433221 11 1112345688999973 36999999999999976
No 38
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=97.03 E-value=0.01 Score=54.66 Aligned_cols=110 Identities=16% Similarity=0.136 Sum_probs=66.6
Q ss_pred EEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceeEEEEEecCCCCCCCCCCCeEEEE--EEEEEcCCCe
Q 006391 144 AVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFS--RQWFRGQDGT 221 (647)
Q Consensus 144 a~~vVdaspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE~iD~~tDIvY~~~~p~~lp~~vs~RDFV~L--RswRr~~dGs 221 (647)
...+|++||++||++|.|.+. -++|.+. ...++++. ++....++.. . ...++.... ..+..+..+.
T Consensus 3 ~s~~i~ap~~~V~~~l~D~~~--~p~~~p~-~~~~~~~~-~~~~~~~~~~-~-------~~~~g~~~~~~~~~~~~~~~~ 70 (142)
T cd08861 3 HSVTVAAPAEDVYDLLADAER--WPEFLPT-VHVERLEL-DGGVERLRMW-A-------TAFDGSVHTWTSRRVLDPEGR 70 (142)
T ss_pred EEEEEcCCHHHHHHHHHhHHh--hhccCCC-ceEEEEEE-cCCEEEEEEE-E-------EcCCCcEEEEEEEEEEcCCCC
Confidence 356899999999999999976 6789998 77787776 3443444421 1 111222211 1111233232
Q ss_pred EEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCccEEEEEEEEcCCCcc
Q 006391 222 YTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 280 (647)
Q Consensus 222 YvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~~~VT~I~qvDlkGw~ 280 (647)
. |....+.-+ ++ . ...-+-|.++|.++ ++|+|+|.+..++++.+
T Consensus 71 ~-i~~~~~~~~--~~----~--~~~~g~w~~~~~~~------~~t~Vt~~~~~~~~~~~ 114 (142)
T cd08861 71 R-IVFRQEEPP--PP----V--ASMSGEWRFEPLGG------GGTRVTLRHDFTLGIDS 114 (142)
T ss_pred E-EEEEEeeCC--CC----h--hhheeEEEEEECCC------CcEEEEEEEEEEECCCC
Confidence 2 333333211 11 1 12345899999874 46999999999999877
No 39
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=96.89 E-value=0.022 Score=54.38 Aligned_cols=137 Identities=17% Similarity=0.113 Sum_probs=81.2
Q ss_pred EEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceeEEEEEecCCCCCCCCCCCeEEEEEEE---EEcCCC
Q 006391 144 AVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQW---FRGQDG 220 (647)
Q Consensus 144 a~~vVdaspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE~iD~~tDIvY~~~~p~~lp~~vs~RDFV~LRsw---Rr~~dG 220 (647)
-+.+|++||++||++|.|.+. -++|.+.+.+.++++. +++....-..+.... . .+ ...| +..+..
T Consensus 5 ~si~i~a~~~~v~~lvaDv~~--~P~~~~~~~~~~~l~~-~~~~~~~r~~i~~~~-----~--g~--~~~w~s~~~~~~~ 72 (146)
T cd08860 5 NSIVIDAPLDLVWDMTNDIAT--WPDLFSEYAEAEVLEE-DGDTVRFRLTMHPDA-----N--GT--VWSWVSERTLDPV 72 (146)
T ss_pred eEEEEcCCHHHHHHHHHhhhh--hhhhccceEEEEEEEe-cCCeEEEEEEEEecc-----C--CE--EEEEEEEEEecCC
Confidence 456899999999999999986 8899999999999986 444344433323211 1 12 2233 222333
Q ss_pred eEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCccEEEEEEEEcCCCccccccCcccceehhhHHHHHH
Q 006391 221 TYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLS 300 (647)
Q Consensus 221 sYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~~~VT~I~qvDlkGw~~w~p~~~~~~~~~~~~~mL~ 300 (647)
.+.|.++ +.+. +|-. ..-+.|.++|++. + |+|++......++-.+....+........ +-.
T Consensus 73 ~~~i~~~--~~~~-~p~~------~m~~~W~f~~~~~------g-T~V~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 133 (146)
T cd08860 73 NRTVRAR--RVET-GPFA------YMNIRWEYTEVPE------G-TRMRWVQDFEMKPGAPVDDAAMTDRLNTN---TRA 133 (146)
T ss_pred CcEEEEE--EecC-CCcc------eeeeeEEEEECCC------C-EEEEEEEEEEECCCCccchHHHHHHHhcc---cHH
Confidence 4555554 2333 3322 2456799999863 3 99999999987753311111222222222 224
Q ss_pred HHHHHHHHhhc
Q 006391 301 QVAGLKEYIGA 311 (647)
Q Consensus 301 ~va~LRe~~~~ 311 (647)
.+++||...++
T Consensus 134 ~l~~Lk~~aE~ 144 (146)
T cd08860 134 QMARIKKKIEA 144 (146)
T ss_pred HHHHHHHHhhh
Confidence 66777776654
No 40
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.83 E-value=0.038 Score=50.32 Aligned_cols=108 Identities=12% Similarity=0.045 Sum_probs=68.0
Q ss_pred EEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceeEEEEEecCCCCCCCCCCCeEEEEEEEEEcCCCe
Q 006391 142 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGT 221 (647)
Q Consensus 142 ~Ka~~vVdaspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE~iD~~tDIvY~~~~p~~lp~~vs~RDFV~LRswRr~~dGs 221 (647)
+..+..|++|+++||+++.|... .++|.+.+.+++++.. . . ..+.++. |. ...++|..- .....++..
T Consensus 2 v~~~i~I~ap~e~V~~~~~D~~~--~~~w~~~~~~~~~~~~---~-~-~~~~~~~---~~-g~~~~~~~~-v~~~~~~~~ 69 (139)
T cd07817 2 VEKSITVNVPVEEVYDFWRDFEN--LPRFMSHVESVEQLDD---T-R-SHWKAKG---PA-GLSVEWDAE-ITEQVPNER 69 (139)
T ss_pred eeEEEEeCCCHHHHHHHHhChhh--hHHHhhhhcEEEEcCC---C-c-eEEEEec---CC-CCcEEEEEE-EeccCCCCE
Confidence 45677899999999999999986 8899999888777643 1 1 1222232 21 344566432 122233332
Q ss_pred EEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCccEEEEEEEEcCCCcc
Q 006391 222 YTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 280 (647)
Q Consensus 222 YvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~~~VT~I~qvDlkGw~ 280 (647)
|...+...+. . ..+-|.++|.++ ++|+||+.++.++.+.+
T Consensus 70 --i~~~~~~~~~--~---------~~~~~~f~~~~~------~~T~vt~~~~~~~~~~~ 109 (139)
T cd07817 70 --IAWRSVEGAD--P---------NAGSVRFRPAPG------RGTRVTLTIEYEPPGGA 109 (139)
T ss_pred --EEEEECCCCC--C---------cceEEEEEECCC------CCeEEEEEEEEECCcch
Confidence 3444433221 2 234566788764 57999999999999876
No 41
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=96.62 E-value=0.17 Score=45.76 Aligned_cols=135 Identities=14% Similarity=0.118 Sum_probs=75.0
Q ss_pred EEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceeEEEEEecCCCCCCCCCCCeEEEEEEEEEcCCCe
Q 006391 142 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGT 221 (647)
Q Consensus 142 ~Ka~~vVdaspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE~iD~~tDIvY~~~~p~~lp~~vs~RDFV~LRswRr~~dGs 221 (647)
+..+..|++||++||++|.|... ...|.+.+..++++. ++..-+... +... +. .-+..+....++++.
T Consensus 4 ~~~~~~v~a~~e~V~~~l~d~~~--~~~w~~~~~~~~~~~--~~~~~~~~~-~~~~---g~----~~~~~~i~~~~~~~~ 71 (139)
T PF10604_consen 4 VEVSIEVPAPPEAVWDLLSDPEN--WPRWWPGVKSVELLS--GGGPGTERT-VRVA---GR----GTVREEITEYDPEPR 71 (139)
T ss_dssp EEEEEEESS-HHHHHHHHTTTTG--GGGTSTTEEEEEEEE--ECSTEEEEE-EEEC---SC----SEEEEEEEEEETTTT
T ss_pred EEEEEEECCCHHHHHHHHhChhh--hhhhhhceEEEEEcc--ccccceeEE-EEec---cc----cceeEEEEEecCCCc
Confidence 45667899999999999999876 778999888777666 233322222 2321 11 223333333334233
Q ss_pred EEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCccEEEEEEEEcCCCccccccCcccceehhhHHHHHHH
Q 006391 222 YTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQ 301 (647)
Q Consensus 222 YvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~~~VT~I~qvDlkGw~~w~p~~~~~~~~~~~~~mL~~ 301 (647)
.+ ..+.+ ..|+..+ -+.|.+.|.++ +|+|++..++++ |+.+|... ..+...+-..+-..
T Consensus 72 ~~-~~~~~-------~~~~~~~---~~~~~~~~~~~-------gt~v~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~ 130 (139)
T PF10604_consen 72 RI-TWRFV-------PSGFTNG---TGRWRFEPVGD-------GTRVTWTVEFEP-GLPGWLAG--PLLRPAVKRIVREA 130 (139)
T ss_dssp EE-EEEEE-------SSSSCEE---EEEEEEEEETT-------TEEEEEEEEEEE-SCTTSCHH--HHHHHHHHHHHHHH
T ss_pred EE-EEEEE-------ecceeEE---EEEEEEEEcCC-------CEEEEEEEEEEE-eccchhhH--HHHHHHHHHHHHHH
Confidence 32 22322 1122222 45799999874 399999999998 55543211 11222222223345
Q ss_pred HHHHHHHh
Q 006391 302 VAGLKEYI 309 (647)
Q Consensus 302 va~LRe~~ 309 (647)
+++|+..+
T Consensus 131 l~~l~~~~ 138 (139)
T PF10604_consen 131 LENLKRAA 138 (139)
T ss_dssp HHHHHHHH
T ss_pred HHHHhccc
Confidence 66666554
No 42
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=96.61 E-value=0.068 Score=48.27 Aligned_cols=137 Identities=16% Similarity=0.022 Sum_probs=77.9
Q ss_pred EEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceeEEEEEecCCCCCCCCCCCeEEEEEEEEEcCCCe
Q 006391 142 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGT 221 (647)
Q Consensus 142 ~Ka~~vVdaspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE~iD~~tDIvY~~~~p~~lp~~vs~RDFV~LRswRr~~dGs 221 (647)
++.+..|++|+++||+.|.|.+. ...|.+.+.+.++.+.-+ .....+..... .. +.+. -+.. ..+.+.
T Consensus 3 i~~~~~i~a~~~~V~~~l~d~~~--~~~w~~~~~~~~~~~~~~-~~g~~~~~~~~----~g---~~~~-~~i~-~~~~~~ 70 (140)
T cd07821 3 VTVSVTIDAPADKVWALLSDFGG--LHKWHPAVASCELEGGGP-GVGAVRTVTLK----DG---GTVR-ERLL-ALDDAE 70 (140)
T ss_pred EEEEEEECCCHHHHHHHHhCcCc--hhhhccCcceEEeecCCC-CCCeEEEEEeC----CC---CEEE-EEeh-hcCccC
Confidence 67788999999999999999976 779999888777765432 11112221111 11 1111 1111 112221
Q ss_pred EEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCccEEEEEEEEcCCCccccccCcccceehhhHHHHHHH
Q 006391 222 YTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQ 301 (647)
Q Consensus 222 YvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~~~VT~I~qvDlkGw~~w~p~~~~~~~~~~~~~mL~~ 301 (647)
..+..+.+.- . .| .....+-|.++|.++ ++|+|+|-.+.+++|.. +. ..+...+...+-..
T Consensus 71 ~~i~~~~~~~-~-~~------~~~~~~~~~~~~~~~------~~t~v~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~ 131 (140)
T cd07821 71 RRYSYRIVEG-P-LP------VKNYVATIRVTPEGD------GGTRVTWTAEFDPPEGL---TD--ELARAFLTGVYRAG 131 (140)
T ss_pred CEEEEEecCC-C-CC------cccceEEEEEEECCC------CccEEEEEEEEecCCCc---ch--HHHHHHHHHHHHHH
Confidence 3344444321 0 11 112346799999874 47999999999999865 32 11222333333456
Q ss_pred HHHHHHHh
Q 006391 302 VAGLKEYI 309 (647)
Q Consensus 302 va~LRe~~ 309 (647)
+++|++++
T Consensus 132 l~~L~~~~ 139 (140)
T cd07821 132 LAALKAAL 139 (140)
T ss_pred HHHHHHhh
Confidence 77777764
No 43
>PRK10724 hypothetical protein; Provisional
Probab=95.98 E-value=0.18 Score=48.95 Aligned_cols=113 Identities=12% Similarity=0.149 Sum_probs=77.1
Q ss_pred cEEEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceeEEEEEecCCCCCCCCCCCeEEEEEEEEEcCC
Q 006391 140 VLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQD 219 (647)
Q Consensus 140 ~~~Ka~~vVdaspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE~iD~~tDIvY~~~~p~~lp~~vs~RDFV~LRswRr~~d 219 (647)
+.++.+..|++|++++|+++.|.+. -++|=+.+.+++++++-++.. +....+. + . +. ..-|..-+.+ ..+
T Consensus 15 ~~i~~~~~v~~s~~~v~~lv~Dve~--yp~flp~~~~s~vl~~~~~~~-~a~l~v~--~-~-g~-~~~f~srv~~--~~~ 84 (158)
T PRK10724 15 PQISRTALVPYSAEQMYQLVNDVQS--YPQFLPGCTGSRVLESTPGQM-TAAVDVS--K-A-GI-SKTFTTRNQL--TSN 84 (158)
T ss_pred CeEEEEEEecCCHHHHHHHHHHHHH--HHHhCcccCeEEEEEecCCEE-EEEEEEe--e-C-Cc-cEEEEEEEEe--cCC
Confidence 4678889999999999999999976 889999999999999976542 2221111 1 1 11 2334433333 223
Q ss_pred CeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCccEEEEEEEEcCCCcc
Q 006391 220 GTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 280 (647)
Q Consensus 220 GsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~~~VT~I~qvDlkGw~ 280 (647)
+ -|...+++. |- + .+.+.|.++|.++ ++|+|++.++..++-.+
T Consensus 85 ~--~I~~~~~~G----pF----~--~l~g~W~f~p~~~------~~t~V~~~l~fef~s~l 127 (158)
T PRK10724 85 Q--SILMQLVDG----PF----K--KLIGGWKFTPLSQ------EACRIEFHLDFEFTNKL 127 (158)
T ss_pred C--EEEEEecCC----Ch----h--hccceEEEEECCC------CCEEEEEEEEEEEchHH
Confidence 3 244455533 22 1 2678999999875 46999999999988877
No 44
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=95.88 E-value=0.11 Score=47.19 Aligned_cols=109 Identities=15% Similarity=0.111 Sum_probs=72.2
Q ss_pred ecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceeEEEEEecCCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEe
Q 006391 148 IDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQF 227 (647)
Q Consensus 148 Vdaspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE~iD~~tDIvY~~~~p~~lp~~vs~RDFV~LRswRr~~dGsYvIa~~ 227 (647)
|++|+++||++|.|.+. -++|-+.+.++++++.-++++.+... ... ...++.|+.-...... .. +...
T Consensus 1 V~ap~~~V~~~i~D~e~--~~~~~p~~~~v~vl~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~--~~--~~~~ 68 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYEN--YPRFFPPVKEVRVLERDGDGMRARWE-VKF-----GGIKRSWTSRVTEDPP--ER--IRFE 68 (130)
T ss_dssp ESS-HHHHHHHHTTGGG--HHHHCTTEEEEEEEEEECCEEEEEEE-ECT-----TTTCEEEEEEEEEECT--TT--EEEE
T ss_pred CCCCHHHHHHHHHHHHH--HHHhCCCCceEEEEEeCCCeEEEEEE-Eec-----CCEEEEEEEEEEEEEe--ee--eeee
Confidence 68999999999999976 88999999999999999885555222 221 2334566543333222 22 2222
Q ss_pred eccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCccEEEEEEEEcCCCcc
Q 006391 228 PAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 280 (647)
Q Consensus 228 SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~~~VT~I~qvDlkGw~ 280 (647)
.+. |-. ...-+.|-++|.+++ +|+.+|.+++-..++++|.+
T Consensus 69 ~~~--------g~~--~~~~g~W~~~~~~~~--~~g~~~~v~~~~~~~~~~~~ 109 (130)
T PF03364_consen 69 QIS--------GPF--KSFEGSWRFEPLGGN--EGGTRTRVTYDYEVDPPGPL 109 (130)
T ss_dssp SSE--------TTE--EEEEEEEEEEEETTE--CCEEEEEEEEEEEEETSSSS
T ss_pred ecC--------CCc--hhcEEEEEEEECCCC--cCCCEEEEEEEEEEecCcHh
Confidence 221 111 234578999999841 12468999999999999999
No 45
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=94.69 E-value=1.3 Score=38.41 Aligned_cols=111 Identities=15% Similarity=0.156 Sum_probs=64.6
Q ss_pred EEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceeEEEEEecCCCCCCCCCCCeEEEEEEEEEc--CCC
Q 006391 143 KAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRG--QDG 220 (647)
Q Consensus 143 Ka~~vVdaspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE~iD~~tDIvY~~~~p~~lp~~vs~RDFV~LRswRr~--~dG 220 (647)
+.+..|++|+++||+.|.|.+. ...|.+.+..+++++.........+.. .. ......++. .+..... +..
T Consensus 2 ~~~~~i~a~~~~v~~~l~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~-~~v~~~~~~~~~ 73 (141)
T cd07812 2 EASIEIPAPPEAVWDLLSDPER--WPEWSPGLERVEVLGGGEGGVGARFVG-GR----KGGRRLTLT-SEVTEVDPPRPG 73 (141)
T ss_pred cEEEEeCCCHHHHHHHHhChhh--hhhhCcccceEEEcCCCCccceeEEEE-Ee----cCCccccce-EEEEEecCCCce
Confidence 4567899999999999999876 889999998888777532221121111 10 000111111 1111111 112
Q ss_pred eEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCccEEEEEEEEcCCCcc
Q 006391 221 TYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 280 (647)
Q Consensus 221 sYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~~~VT~I~qvDlkGw~ 280 (647)
.|.+ .+-.+. ....+.|.+.|.++ .+|+|++-...+++++.
T Consensus 74 ~~~~--~~~~~~-----------~~~~~~~~~~~~~~------~~t~v~~~~~~~~~~~~ 114 (141)
T cd07812 74 RFRV--TGGGGG-----------VDGTGEWRLEPEGD------GGTRVTYTVEYDPPGPL 114 (141)
T ss_pred EEEE--ecCCCC-----------cceeEEEEEEECCC------CcEEEEEEEEEecCCcc
Confidence 2222 111111 13356788998764 47999999999999987
No 46
>KOG3845 consensus MLN, STAR and related lipid-binding proteins [Lipid transport and metabolism]
Probab=94.42 E-value=0.0022 Score=66.43 Aligned_cols=156 Identities=12% Similarity=-0.018 Sum_probs=106.1
Q ss_pred CEEEEEeCCeEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceeEEEEEec
Q 006391 116 WKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYD 195 (647)
Q Consensus 116 W~l~~~kngVrVf~~~~~~~~~~~~~~Ka~~vVdaspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE~iD~~tDIvY~~~~ 195 (647)
|.+....+-+.+..+..+. ..+.+.++..+.+-.....-..+.-... +..|+.--.-...++.+..++++....+.
T Consensus 27 ~s~~k~~~~v~~~~~a~~~--~~~~i~~v~~~~~lf~~~~~~~i~~~~~--i~~~~~g~~v~~~~~~~~~~~~~~~s~~~ 102 (241)
T KOG3845|consen 27 WSVAKTLKLVTVESLAGEK--PKGNISRVRRFFCLFVTEDLVFISLLWL--IELLQNGPEVYNMLEKIQKNTDIWTSEFD 102 (241)
T ss_pred HHHHhhcceeEEeccCCcC--cCCcccccceeeccccccchheeecchh--hHHHhccchHHHHHHHHHhheeeeeEecH
Confidence 5555555556665554432 2334555555555433332222222222 33444433566778888889899888766
Q ss_pred CCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCccEEEEEEEEc
Q 006391 196 PKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIH 275 (647)
Q Consensus 196 p~~lp~~vs~RDFV~LRswRr~~dGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~~~VT~I~qvD 275 (647)
... -..+++|+|+...+..+...+.-....++++++-++|...++|+..+++|++..|++.+ +..+...--.+.|
T Consensus 103 ~~~-~~i~~~~~~i~~~~v~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~n~~~~~~~~~l~~~----~~~~~~~~~~~~d 177 (241)
T KOG3845|consen 103 SFN-VDIFRPRVFIDSGSVFRLEHMINIPVTTCVSRAFLSAKVILVRGYNHPCGVFCVPLPIE----PFILAWLREWFLD 177 (241)
T ss_pred hhh-hhcccccccCCcceEeehhhccccccceeccchhhcccceeeeccCCcceEEEEEcCCc----chhHHHHHHHHhh
Confidence 543 35789999999999998877777777899999999999999999999999999999973 3344444445778
Q ss_pred CCCcc
Q 006391 276 SSGWC 280 (647)
Q Consensus 276 lkGw~ 280 (647)
.+|..
T Consensus 178 ~rg~~ 182 (241)
T KOG3845|consen 178 LRGLP 182 (241)
T ss_pred cccCC
Confidence 88887
No 47
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=94.41 E-value=0.96 Score=40.60 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=30.0
Q ss_pred EEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEE
Q 006391 144 AVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVD 181 (647)
Q Consensus 144 a~~vVdaspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE 181 (647)
....|++|+++||++|.|... .++|.+.+..++.+.
T Consensus 3 ~~~~i~ap~~~Vw~~l~d~~~--~~~w~~~~~~~~~~~ 38 (140)
T cd08865 3 ESIVIERPVEEVFAYLADFEN--APEWDPGVVEVEKIT 38 (140)
T ss_pred eEEEEcCCHHHHHHHHHCccc--hhhhccCceEEEEcC
Confidence 456799999999999999976 789999887666654
No 48
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=92.66 E-value=5.1 Score=36.19 Aligned_cols=40 Identities=25% Similarity=0.348 Sum_probs=33.6
Q ss_pred EEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEee
Q 006391 142 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSY 183 (647)
Q Consensus 142 ~Ka~~vVdaspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE~i 183 (647)
+..+..|+||+++||+.+.|+.. .++|.+.+..++++...
T Consensus 3 ~~~~~~i~Ap~~~Vw~~~~d~~~--~~~w~~~~~~~~~~~~~ 42 (138)
T cd08862 3 FEATIVIDAPPERVWAVLTDVEN--WPAWTPSVETVRLEGPP 42 (138)
T ss_pred EEEEEEEcCCHHHHHHHHHhhhh--cccccCcceEEEEecCC
Confidence 55677899999999999999876 78999988887776644
No 49
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=92.59 E-value=2.5 Score=39.49 Aligned_cols=39 Identities=18% Similarity=0.121 Sum_probs=28.4
Q ss_pred EEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCce
Q 006391 144 AVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHY 187 (647)
Q Consensus 144 a~~vVdaspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE~iD~~t 187 (647)
.+..|++||+.||+.|.|.+. -..|.+. ++.++.+++++
T Consensus 3 ~~~~v~a~pe~vw~~l~D~~~--~~~~~pg---~~~~~~~~~~~ 41 (146)
T cd07823 3 NEFTVPAPPDRVWALLLDIER--VAPCLPG---ASLTEVEGDDE 41 (146)
T ss_pred ceEEecCCHHHHHHHhcCHHH--HHhcCCC---ceeccccCCCe
Confidence 456799999999999999865 5567664 45555565554
No 50
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=91.23 E-value=6.7 Score=36.63 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=32.1
Q ss_pred EEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEE
Q 006391 143 KAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVD 181 (647)
Q Consensus 143 Ka~~vVdaspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE 181 (647)
-....|++||++||++|.|.+. -++|.+.+.++++++
T Consensus 4 ~~~~~i~ap~e~Vw~~~tD~~~--~~~w~~~v~~~~~~~ 40 (146)
T cd07824 4 HTVWRIPAPPEAVWDVLVDAES--WPDWWPGVERVVELE 40 (146)
T ss_pred eEEEEecCCHHHHHHHHhChhh--cchhhhceEEEEEcc
Confidence 3456899999999999999976 789999988888877
No 51
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=90.94 E-value=9.1 Score=34.31 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=28.7
Q ss_pred EEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEE
Q 006391 142 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLEL 179 (647)
Q Consensus 142 ~Ka~~vVdaspe~Vfe~L~d~~~~~R~~WD~~~~~~ev 179 (647)
+..+..|++|+++||+.|.|... ...|.+.+...+.
T Consensus 2 v~~~~~i~ap~~~Vw~~~~d~~~--~~~w~~~~~~~~~ 37 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLTDFPS--YPEWNPFVRSATG 37 (141)
T ss_pred eEEEEEecCCHHHHHHHHhcccc--ccccChhheeEec
Confidence 45677899999999999999876 7889876654443
No 52
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=90.38 E-value=7.2 Score=36.11 Aligned_cols=38 Identities=26% Similarity=0.261 Sum_probs=31.5
Q ss_pred EEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEE
Q 006391 142 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVD 181 (647)
Q Consensus 142 ~Ka~~vVdaspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE 181 (647)
+..+.+|++|+++||+++.|... -++|++.+...+.++
T Consensus 4 ~~~s~~I~ap~e~V~~~i~D~~~--~~~W~p~~~~~~~~~ 41 (150)
T cd07818 4 VERSIVINAPPEEVFPYVNDLKN--WPEWSPWEKLDPDMK 41 (150)
T ss_pred EEEEEEEeCCHHHHHHHHhCccc--CcccCchhhcCcceE
Confidence 56778899999999999999976 889999877655544
No 53
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=87.69 E-value=0.58 Score=42.08 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=24.0
Q ss_pred CcceeecccCHHHHHHHHHHHHHHHH
Q 006391 10 SKKGEIACATAGEARKWMEAFDQAKQ 35 (647)
Q Consensus 10 ~~~~~~~~~~~eea~~w~~~~~~~~~ 35 (647)
.+-.++.|.|.||-..|+++|++||+
T Consensus 73 ~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 73 QCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred CeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 46689999999999999999999987
No 54
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=84.57 E-value=0.81 Score=37.83 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=25.7
Q ss_pred eeecCCCCCcceeecccCHHHHHHHHHHHHHH
Q 006391 2 RLYNRLDESKKGEIACATAGEARKWMEAFDQA 33 (647)
Q Consensus 2 ~~yn~~~~~~~~~~~~~~~eea~~w~~~~~~~ 33 (647)
.|.+.......+.|-|.|.+|+..|+++|++|
T Consensus 68 ~i~~~~~~~~~~~~~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 68 AIVTKDRGRRVFVFQADSEEEAQEWVEALQQA 99 (99)
T ss_pred EEECCCCCcEEEEEEcCCHHHHHHHHHHHhcC
Confidence 44444335788999999999999999999875
No 55
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=82.81 E-value=38 Score=30.93 Aligned_cols=30 Identities=33% Similarity=0.398 Sum_probs=25.6
Q ss_pred EEEEEeecCCHHHHHHHHHccCCcccccccCC
Q 006391 142 VKAVGVIDASADTVFEVVLNLERHQRYEWDML 173 (647)
Q Consensus 142 ~Ka~~vVdaspe~Vfe~L~d~~~~~R~~WD~~ 173 (647)
+..+..|+|||++||++|.|... .++|++.
T Consensus 2 i~~~~~i~ap~e~Vw~~l~d~~~--~~~W~~~ 31 (144)
T cd07825 2 VSVSRTVDAPAEAVFAVLADPRR--HPEIDGS 31 (144)
T ss_pred eEEEEEEeCCHHHHHHHHhCccc--cceeCCC
Confidence 34667899999999999999976 8999864
No 56
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=82.50 E-value=38 Score=31.73 Aligned_cols=111 Identities=12% Similarity=-0.051 Sum_probs=64.6
Q ss_pred EEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceeEEEEEecCCCCCCCCCCCeEEEEEEEEEcCCCeEEE
Q 006391 145 VGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTI 224 (647)
Q Consensus 145 ~~vVdaspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE~iD~~tDIvY~~~~p~~lp~~vs~RDFV~LRswRr~~dGsYvI 224 (647)
+..|++|+++|++.|.|+ ..|=.++-.++.+|.++++.+. -...+ . ++++.+=-..++....++...+.+
T Consensus 2 s~~v~a~~~~vw~~l~D~-----~~l~~ciPG~~~~e~~~~~~~~-~~~v~--v--G~i~~~~~g~~~~~~~~~~~~~~~ 71 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFLSDP-----ENLARCIPGVESIEKVGDEYKG-KVKVK--V--GPIKGTFDGEVRITEIDPPESYTL 71 (140)
T ss_dssp EEEECS-HHHHHHHHT-H-----HHHHHHSTTEEEEEEECTEEEE-EEEEE--S--CCCEEEEEEEEEEEEEETTTEEEE
T ss_pred cEEecCCHHHHHHHhcCH-----HHHHhhCCCcEEeeecCcEEEE-EEEEE--e--ccEEEEEEEEEEEEEcCCCcceEe
Confidence 457899999999999985 4678899999999999944332 22223 1 244443334444444445555543
Q ss_pred EEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCccEEEEEEEEcCCCcc
Q 006391 225 LQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 280 (647)
Q Consensus 225 a~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~~~VT~I~qvDlkGw~ 280 (647)
-..--.. .+-..+... ..+...+. .. |+|+|-..++..|.+
T Consensus 72 ~~~g~g~------~~~~~~~~~---~~~~~~~~-----~~-T~v~~~~~~~~~G~l 112 (140)
T PF06240_consen 72 EFEGRGR------GGGSSASAN---ITLSLEDD-----GG-TRVTWSADVEVGGPL 112 (140)
T ss_dssp EEEEEEC------TCCEEEEEE---EEEEECCC-----TC-EEEEEEEEEEEECHH
T ss_pred eeeccCC------ccceEEEEE---EEEEcCCC-----CC-cEEEEEEEEEEccCH
Confidence 3332211 122333322 11333222 24 999999999999999
No 57
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=82.40 E-value=44 Score=31.67 Aligned_cols=119 Identities=12% Similarity=0.035 Sum_probs=71.8
Q ss_pred EEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceeEEEEEecCCCCCCCCCCCeEEEEEEEEEcCCCe
Q 006391 142 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGT 221 (647)
Q Consensus 142 ~Ka~~vVdaspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE~iD~~tDIvY~~~~p~~lp~~vs~RDFV~LRswRr~~dGs 221 (647)
+..+..|++|++++|+++.+....-...|-+.+.++++++-=++.-.|....+.+. . +++ .+.-|--. .++..
T Consensus 3 ~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~~~----~-~~~-~~kE~l~~-~D~~~ 75 (148)
T cd07816 3 LEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGPG----G-KVK-YVKERIDA-VDEEN 75 (148)
T ss_pred EEEEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCceEEEEEEcCC----C-cce-EEEEEEEE-Ecccc
Confidence 56788999999999999999862024578888899998864233334555554431 1 111 12111111 23435
Q ss_pred EEEEEeeccCCCCC-CCCCeeeEEEcceeEEEEecCCCCCCCCCccEEEEEEEEcCCCc
Q 006391 222 YTILQFPAVHKKRP-PKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGW 279 (647)
Q Consensus 222 YvIa~~SV~Hp~~P-p~~G~VRAei~~sGylI~P~~~~~~~~~~~~~VT~I~qvDlkGw 279 (647)
..+.++-++-+-.. +- ....+-+-+.|.+. ++|.++|.+..++.+=
T Consensus 76 ~~~~y~vveg~~~~~~~------~~y~~t~~v~~~~~------~~t~v~Wt~~ye~~~~ 122 (148)
T cd07816 76 KTYKYTVIEGDVLKDGY------KSYKVEIKFVPKGD------GGCVVKWTIEYEKKGD 122 (148)
T ss_pred cEEEEEEEecccccCce------EEEEEEEEEEECCC------CCEEEEEEEEEEECCC
Confidence 66666555433211 12 23355677788743 5799999999987654
No 58
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=78.97 E-value=1.8 Score=36.59 Aligned_cols=24 Identities=21% Similarity=0.508 Sum_probs=21.7
Q ss_pred CcceeecccCHHHHHHHHHHHHHH
Q 006391 10 SKKGEIACATAGEARKWMEAFDQA 33 (647)
Q Consensus 10 ~~~~~~~~~~~eea~~w~~~~~~~ 33 (647)
++.+.|.|.|.+|+..|+++|+.|
T Consensus 68 ~~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 68 DKTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhC
Confidence 378899999999999999999875
No 59
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=69.36 E-value=4.7 Score=33.96 Aligned_cols=25 Identities=20% Similarity=0.442 Sum_probs=22.6
Q ss_pred CcceeecccCHHHHHHHHHHHHHHH
Q 006391 10 SKKGEIACATAGEARKWMEAFDQAK 34 (647)
Q Consensus 10 ~~~~~~~~~~~eea~~w~~~~~~~~ 34 (647)
...+.|.|.|.+|...|+++|+.|+
T Consensus 79 ~~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 79 GKSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 3478999999999999999999985
No 60
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=68.87 E-value=4.1 Score=37.10 Aligned_cols=33 Identities=27% Similarity=0.492 Sum_probs=27.3
Q ss_pred CeeecCC-----CCCcceeecccCHHHHHHHHHHHHHH
Q 006391 1 MRLYNRL-----DESKKGEIACATAGEARKWMEAFDQA 33 (647)
Q Consensus 1 ~~~yn~~-----~~~~~~~~~~~~~eea~~w~~~~~~~ 33 (647)
|.+||.. ...+|++++|.|.||...||-+|..|
T Consensus 67 FeLfnpd~rnvykd~k~lel~~~~~e~vdswkasflra 104 (110)
T cd01256 67 FALFYPDGRNVYKDYKQLELGCETLEEVDSWKASFLRA 104 (110)
T ss_pred EEEEcCcccccccchheeeecCCCHHHHHHHHHHHHhc
Confidence 4566554 45689999999999999999999877
No 61
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=68.56 E-value=4.4 Score=35.38 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=21.7
Q ss_pred CCcceeecccCHHHHHHHHHHHHHHH
Q 006391 9 ESKKGEIACATAGEARKWMEAFDQAK 34 (647)
Q Consensus 9 ~~~~~~~~~~~~eea~~w~~~~~~~~ 34 (647)
+.+..-|.|.|.||+..|+++|+.+|
T Consensus 76 ~~r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 76 SKRTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred CCceEEEECCCHHHHHHHHHHHHhhC
Confidence 34456678999999999999999875
No 62
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=68.09 E-value=5.3 Score=32.83 Aligned_cols=24 Identities=17% Similarity=0.401 Sum_probs=21.9
Q ss_pred cceeecccCHHHHHHHHHHHHHHH
Q 006391 11 KKGEIACATAGEARKWMEAFDQAK 34 (647)
Q Consensus 11 ~~~~~~~~~~eea~~w~~~~~~~~ 34 (647)
..+.|.|.|.+|+..|+++|+.++
T Consensus 78 ~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 78 RSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHhh
Confidence 378999999999999999999885
No 63
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=67.91 E-value=1e+02 Score=31.19 Aligned_cols=133 Identities=16% Similarity=0.117 Sum_probs=83.4
Q ss_pred EEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceeEEEEEecCCCCCCCCCCCeEEEEEEEEE----c
Q 006391 142 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFR----G 217 (647)
Q Consensus 142 ~Ka~~vVdaspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE~iD~~tDIvY~~~~p~~lp~~vs~RDFV~LRswRr----~ 217 (647)
.....+|+.|+++||.+..|++. .+.|-+++.+.+|++ ++- -+.+.+. | .-.-..|.- +
T Consensus 72 v~~~V~I~kPae~vy~~W~dLe~--lP~~Mkhl~SVkVld---dkr--SrW~~~a---p-------~g~~v~Wea~it~d 134 (217)
T COG5637 72 VEVQVTIDKPAEQVYAYWRDLEN--LPLWMKHLDSVKVLD---DKR--SRWKANA---P-------LGLEVEWEAEITKD 134 (217)
T ss_pred EEEEEEeCChHHHHHHHHHhhhh--hhHHHHhhceeeccC---CCc--cceeEcC---C-------CCceEEEeehhhcc
Confidence 45556799999999999999987 999999988777654 442 2333332 1 112234543 2
Q ss_pred CCCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCccEEEEEEEEcCCCccccccC-cccceehhhH-
Q 006391 218 QDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKN-SSTKFEKTTH- 295 (647)
Q Consensus 218 ~dGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~~~VT~I~qvDlkGw~~w~p~-~~~~~~~~~~- 295 (647)
..| =.|.-.|+.-...|-+ |.|| .++.+. .+|.|...+...+-||. .. ..+++.+--+
T Consensus 135 ~~~-e~I~W~Sl~Ga~v~Ns-G~Vr---------F~~~pg------~~t~V~v~lsY~~Pgg~---~~a~va~~fgeepe 194 (217)
T COG5637 135 IPG-ERIQWESLPGARVENS-GAVR---------FYDAPG------DSTEVKVTLSYRPPGGL---LGAVVAKLFGEEPE 194 (217)
T ss_pred CCC-cEEeeecCCCCcCCCC-ccEE---------eeeCCC------CceEEEEEEEecCCccH---HHHHHHHHhccchH
Confidence 233 4678888876666544 7676 344443 35788888888888887 21 1233332222
Q ss_pred HHHHHHHHHHHHHhhc
Q 006391 296 FALLSQVAGLKEYIGA 311 (647)
Q Consensus 296 ~~mL~~va~LRe~~~~ 311 (647)
.++-+.+.++|+++..
T Consensus 195 qqI~~DL~RFk~~~e~ 210 (217)
T COG5637 195 QQIQDDLERFKEYQEN 210 (217)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 2334678888888876
No 64
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=67.80 E-value=5.3 Score=35.88 Aligned_cols=26 Identities=31% Similarity=0.621 Sum_probs=23.5
Q ss_pred CcceeecccCHHHHHHHHHHHHHHHH
Q 006391 10 SKKGEIACATAGEARKWMEAFDQAKQ 35 (647)
Q Consensus 10 ~~~~~~~~~~~eea~~w~~~~~~~~~ 35 (647)
++.-.|.|.|.+|+..|+++|+.|+.
T Consensus 76 ~Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 76 ERKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred CeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 56678999999999999999999976
No 65
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=67.30 E-value=6.7 Score=35.73 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=24.7
Q ss_pred CcceeecccCHHHHHHHHHHHHHHHHHH
Q 006391 10 SKKGEIACATAGEARKWMEAFDQAKQQA 37 (647)
Q Consensus 10 ~~~~~~~~~~~eea~~w~~~~~~~~~~~ 37 (647)
.+...+.|.|++|-..|+++|++||++.
T Consensus 74 ~kSf~v~A~s~~eK~eWl~~i~~ai~~~ 101 (104)
T cd01218 74 TKSFAVYAATETEKREWMLHINKCVTDL 101 (104)
T ss_pred CeEEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 4567799999999999999999999953
No 66
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=65.63 E-value=64 Score=31.37 Aligned_cols=109 Identities=16% Similarity=0.187 Sum_probs=71.3
Q ss_pred EEEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCc----eeEEEEEecCCCCCCCCCCCeEEEEEEEEE
Q 006391 141 LVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGH----YDVVYGTYDPKYLTRWQSKRDFVFSRQWFR 216 (647)
Q Consensus 141 ~~Ka~~vVdaspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE~iD~~----tDIvY~~~~p~~lp~~vs~RDFV~LRswRr 216 (647)
.+.....|..+|+++|+++.|... -++.=+.+...+|+++=..+ .+|.|..+ |.--.-|-...
T Consensus 3 ~~~~s~lv~y~a~~mF~LV~dV~~--YP~FlP~C~~s~v~~~~~~~l~A~l~V~~k~i-----------~e~F~Trv~~~ 69 (146)
T COG2867 3 QIERTALVPYSASQMFDLVNDVES--YPEFLPWCSASRVLERNERELIAELDVGFKGI-----------RETFTTRVTLK 69 (146)
T ss_pred eeEeeeeccCCHHHHHHHHHHHHh--CchhccccccceEeccCcceeEEEEEEEhhhe-----------eeeeeeeeeec
Confidence 466778899999999999999875 77888888888888874333 12222211 12111121111
Q ss_pred cCCCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCccEEEEEEEEcCCCcc
Q 006391 217 GQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 280 (647)
Q Consensus 217 ~~dGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~~~VT~I~qvDlkGw~ 280 (647)
.+.-+|....+.-|= .-+-++|-+.|+.. ..|+|...+.-+.++.+
T Consensus 70 --~~~~~I~~~l~~GPF----------k~L~~~W~F~pl~~------~~ckV~f~ldfeF~s~l 115 (146)
T COG2867 70 --PTARSIDMKLIDGPF----------KYLKGGWQFTPLSE------DACKVEFFLDFEFKSRL 115 (146)
T ss_pred --CchhhhhhhhhcCCh----------hhhcCceEEEECCC------CceEEEEEEEeeehhHH
Confidence 222245444443321 13568999999975 68999999999999888
No 67
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=63.21 E-value=7.1 Score=34.88 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=23.0
Q ss_pred cceeecccCHHHHHHHHHHHHHHHH
Q 006391 11 KKGEIACATAGEARKWMEAFDQAKQ 35 (647)
Q Consensus 11 ~~~~~~~~~~eea~~w~~~~~~~~~ 35 (647)
+-..+.|.|.||=..||++|+.||+
T Consensus 76 rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 76 RCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred cEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 5678899999999999999999987
No 68
>TIGR01599 PYST-A Plasmodium yoelii subtelomeric family PYST-A. A single high-scoring gene was identified in the complete genome of P. falciparum as well as a single gene from P. chaboudi from GenBank which were included in the seed. There are no obvious homologs to these genes in any non-Plasmodium organism. These observations suggest an expansion of this family in yoelii from a common Plasmodium ancestor gene (present in a single copy in falciparum).
Probab=62.63 E-value=1.3e+02 Score=30.88 Aligned_cols=113 Identities=12% Similarity=0.096 Sum_probs=78.4
Q ss_pred cEEEEEEeecCC--HHHHHHHHHccCCcccccccCCCCceEEEEeecCceeEEEEEecCCCCCCCCCCCeEEEEEEEEEc
Q 006391 140 VLVKAVGVIDAS--ADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRG 217 (647)
Q Consensus 140 ~~~Ka~~vVdas--pe~Vfe~L~d~~~~~R~~WD~~~~~~evVE~iD~~tDIvY~~~~p~~lp~~vs~RDFV~LRswRr~ 217 (647)
.+-|....|.-| =.+|...|+|++. -...|..+..++++...+++.-++++..+... +-..|=|-.|..--..
T Consensus 59 dI~K~~~~I~~pnkYneIIN~LWdpn~--~~~fn~~~ikgki~RvYnpNLvmiqqry~~~~---~~~~~YfyaLa~Kv~i 133 (208)
T TIGR01599 59 IIGKIHLTIQDPNKYDAIIKTLWDFND--NKKFGRKFIKGKVVRVYSPNLIMIQQRYKDAS---GSPNKYFYALATKVKV 133 (208)
T ss_pred EEEEEEEEecCchhHHHHHHHHhcccc--ccCCCchheeeeEEEEeCCCeEEEEeecCCCC---CCcceEEeEeeeeeec
Confidence 355666666543 4788999999876 56789999999999999999999999877532 3344556666654444
Q ss_pred CCCeEEEEEeeccCCCCCC--CCC--------------------------eeeEEEcceeEEEEecCC
Q 006391 218 QDGTYTILQFPAVHKKRPP--KSG--------------------------YRRTKINPSTWEIRSLNL 257 (647)
Q Consensus 218 ~dGsYvIa~~SV~Hp~~Pp--~~G--------------------------~VRAei~~sGylI~P~~~ 257 (647)
..++-+|++.|..--+.-+ .+. .-.-.+.++||+|..-..
T Consensus 134 Sed~TiIv~~S~~ind~n~~~~~~~~n~iv~san~f~~~idse~dir~g~l~k~fvNl~G~~IkK~~d 201 (208)
T TIGR01599 134 SEDTTIIACTSANINDHNKVDKKNFKNKIIESANSFKTDIDSEEDIRNGELKKMFVNLSGFIIKKKDD 201 (208)
T ss_pred CCCcEEEEEeccccccCCccccccccceeeeecccccCccCHHHHHHhhhhhheEEeeEEEEEEecCC
Confidence 5567888888886544333 111 223367889999988553
No 69
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=59.22 E-value=1.3e+02 Score=26.78 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=25.0
Q ss_pred EEEEEeecCCHHHHHHHHHccCCcccccccCC
Q 006391 142 VKAVGVIDASADTVFEVVLNLERHQRYEWDML 173 (647)
Q Consensus 142 ~Ka~~vVdaspe~Vfe~L~d~~~~~R~~WD~~ 173 (647)
+..+.+|++|+++||++|.|.+. -+.|.+.
T Consensus 2 i~~s~~I~a~~~~Vw~~l~d~~~--~~~w~~~ 31 (139)
T cd07814 2 ITIEREFDAPPELVWRALTDPEL--LAQWFGP 31 (139)
T ss_pred eEEEEEecCCHHHHHHHcCCHHH--HHhhhCc
Confidence 45667899999999999999865 6789775
No 70
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=58.25 E-value=8.6 Score=33.51 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=21.0
Q ss_pred cceeecccCHHHHHHHHHHHHHH
Q 006391 11 KKGEIACATAGEARKWMEAFDQA 33 (647)
Q Consensus 11 ~~~~~~~~~~eea~~w~~~~~~~ 33 (647)
+.+-|+|.|.||+..||++|+.|
T Consensus 74 ~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 74 KSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred cEEEEEeCCHHHHHHHHHHHHhC
Confidence 66889999999999999999875
No 71
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=58.07 E-value=12 Score=33.72 Aligned_cols=27 Identities=15% Similarity=0.274 Sum_probs=24.2
Q ss_pred CCcceeecccCHHHHHHHHHHHHHHHH
Q 006391 9 ESKKGEIACATAGEARKWMEAFDQAKQ 35 (647)
Q Consensus 9 ~~~~~~~~~~~~eea~~w~~~~~~~~~ 35 (647)
...++.+-|.|.|+-..|+++|+.++.
T Consensus 70 p~~~~~l~A~s~e~K~~W~~~i~~~i~ 96 (97)
T cd01222 70 PKGALQLTARNREEKRIWTQQLKRAML 96 (97)
T ss_pred CceEEEEEecCHHHHHHHHHHHHHHhh
Confidence 336899999999999999999999975
No 72
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=57.37 E-value=13 Score=34.34 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=21.8
Q ss_pred ceeecccCHHHHHHHHHHHHHHHH
Q 006391 12 KGEIACATAGEARKWMEAFDQAKQ 35 (647)
Q Consensus 12 ~~~~~~~~~eea~~w~~~~~~~~~ 35 (647)
-..|.|.|.+|+..|+.+|+.++.
T Consensus 91 ~~~~~A~s~~e~~~Wi~al~~~~~ 114 (125)
T cd01252 91 VYRISAANDEEMDEWIKSIKASIS 114 (125)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHh
Confidence 445899999999999999999987
No 73
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=54.85 E-value=15 Score=33.90 Aligned_cols=38 Identities=13% Similarity=0.066 Sum_probs=33.0
Q ss_pred EEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEee
Q 006391 144 AVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSY 183 (647)
Q Consensus 144 a~~vVdaspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE~i 183 (647)
.+..|++|+++||+.+.|.+. -+.|.+.+.++++++.-
T Consensus 3 ~s~~I~ap~e~V~~~~~d~~~--~~~~~p~~~~v~~~~~~ 40 (137)
T cd07820 3 RSTVIPAPIEEVFDFHSRPDN--LERLTPPWLEFAVLGRT 40 (137)
T ss_pred EEEEcCCCHHHHHHHHcCcch--HHhcCCCCCCeEEEecC
Confidence 456799999999999999986 88999999999998643
No 74
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=49.96 E-value=13 Score=31.48 Aligned_cols=25 Identities=16% Similarity=0.396 Sum_probs=21.1
Q ss_pred CCcceeecccCHHHHHHHHHHHHHH
Q 006391 9 ESKKGEIACATAGEARKWMEAFDQA 33 (647)
Q Consensus 9 ~~~~~~~~~~~~eea~~w~~~~~~~ 33 (647)
+++.+.|.|.|.+|+..|+.||+++
T Consensus 70 ~~~~~~f~a~s~~~~~~Wi~al~~~ 94 (94)
T cd01250 70 PTKTWHFQADSEEERDDWISAIQES 94 (94)
T ss_pred CCcEEEEECCCHHHHHHHHHHHhcC
Confidence 3466789999999999999999753
No 75
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=47.83 E-value=16 Score=29.66 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=21.0
Q ss_pred cceeecccCHHHHHHHHHHHHHH
Q 006391 11 KKGEIACATAGEARKWMEAFDQA 33 (647)
Q Consensus 11 ~~~~~~~~~~eea~~w~~~~~~~ 33 (647)
+.+.|.|.|.+|+..|+.+|+.|
T Consensus 74 ~~~~~~~~s~~~~~~W~~~l~~~ 96 (96)
T cd00821 74 RSYLLQAESEEEREEWIEALQSA 96 (96)
T ss_pred cEEEEEeCCHHHHHHHHHHHhcC
Confidence 78899999999999999999864
No 76
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=46.09 E-value=2.3e+02 Score=27.62 Aligned_cols=41 Identities=15% Similarity=0.226 Sum_probs=31.5
Q ss_pred EEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCcee
Q 006391 143 KAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYD 188 (647)
Q Consensus 143 Ka~~vVdaspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE~iD~~tD 188 (647)
..+-.|.+||++|++.|.|++. . -.++.-++-+|+.++.+.
T Consensus 4 ~G~f~V~~p~e~Vw~~L~dpe~--~---a~ciPG~qs~e~~g~e~~ 44 (146)
T COG3427 4 EGTFRVAAPPEAVWEFLNDPEQ--V---AACIPGVQSVETNGDEYT 44 (146)
T ss_pred cceEEecCCHHHHHHHhcCHHH--H---HhhcCCcceeeecCCeEE
Confidence 3455789999999999999853 2 367788889999877433
No 77
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=42.90 E-value=30 Score=32.38 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=23.1
Q ss_pred cceeecccCHHHHHHHHHHHHHHHH
Q 006391 11 KKGEIACATAGEARKWMEAFDQAKQ 35 (647)
Q Consensus 11 ~~~~~~~~~~eea~~w~~~~~~~~~ 35 (647)
..++|.|-|.||-.+||++|+.|+.
T Consensus 88 ~~~~f~~Ktee~K~kWm~al~~a~s 112 (116)
T cd01223 88 TGFTFYFKTEHLRKKWLKALEMAMS 112 (116)
T ss_pred ccEEEEeCCHHHHHHHHHHHHHHHh
Confidence 5689999999999999999999976
No 78
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=41.59 E-value=27 Score=30.77 Aligned_cols=25 Identities=8% Similarity=0.320 Sum_probs=21.8
Q ss_pred CCcceeecccCHHHHHHHHHHHHHH
Q 006391 9 ESKKGEIACATAGEARKWMEAFDQA 33 (647)
Q Consensus 9 ~~~~~~~~~~~~eea~~w~~~~~~~ 33 (647)
.++...|.|.|.+|...|+++|+.+
T Consensus 69 ~~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 69 NNEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhh
Confidence 3456789999999999999999876
No 79
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=37.41 E-value=36 Score=30.21 Aligned_cols=26 Identities=12% Similarity=0.187 Sum_probs=22.7
Q ss_pred CCcceeecccCHHHHHHHHHHHHHHH
Q 006391 9 ESKKGEIACATAGEARKWMEAFDQAK 34 (647)
Q Consensus 9 ~~~~~~~~~~~~eea~~w~~~~~~~~ 34 (647)
.++...|.|.|.+|...||.+|...+
T Consensus 73 ~~rt~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 73 KHRGYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred CCCEEEEEcCCHHHHHHHHHHhhhhh
Confidence 56678999999999999999998764
No 80
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=32.04 E-value=42 Score=30.09 Aligned_cols=30 Identities=17% Similarity=0.096 Sum_probs=25.1
Q ss_pred EEEEEeecCCHHHHHHHHHccCCcccccccCC
Q 006391 142 VKAVGVIDASADTVFEVVLNLERHQRYEWDML 173 (647)
Q Consensus 142 ~Ka~~vVdaspe~Vfe~L~d~~~~~R~~WD~~ 173 (647)
+..+.+|++||++||+.|.+.+. ..+|...
T Consensus 2 ~~~~~~i~ap~e~Vw~~~td~~~--~~~W~~~ 31 (136)
T cd08893 2 FVYVTYIRATPEKVWQALTDPEF--TRQYWGG 31 (136)
T ss_pred eEEEEEecCCHHHHHHHHcCchh--hhheecc
Confidence 45677899999999999999875 7889754
No 81
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=28.99 E-value=44 Score=31.77 Aligned_cols=31 Identities=16% Similarity=0.297 Sum_probs=27.8
Q ss_pred cEEEEEEeecCCHHHHHHHHHccCCcccccccC
Q 006391 140 VLVKAVGVIDASADTVFEVVLNLERHQRYEWDM 172 (647)
Q Consensus 140 ~~~Ka~~vVdaspe~Vfe~L~d~~~~~R~~WD~ 172 (647)
..+..+..|++|+++||+.|.|... ..+|..
T Consensus 11 ~~i~~~~~i~Ap~e~Vw~altdp~~--~~~W~~ 41 (157)
T cd08899 11 ATLRFERLLPAPIEDVWAALTDPER--LARWFA 41 (157)
T ss_pred eEEEEEEecCCCHHHHHHHHcCHHH--HHhhcC
Confidence 5688999999999999999999875 788988
No 82
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=27.84 E-value=48 Score=29.81 Aligned_cols=24 Identities=17% Similarity=0.436 Sum_probs=20.4
Q ss_pred CcceeecccCHHHHHHHHHHHHHH
Q 006391 10 SKKGEIACATAGEARKWMEAFDQA 33 (647)
Q Consensus 10 ~~~~~~~~~~~eea~~w~~~~~~~ 33 (647)
++.+-|-|.|.+|+..|+++|+.+
T Consensus 75 ~r~~yi~a~s~~E~~~Wi~al~k~ 98 (98)
T cd01244 75 DDTMQLQFEAPVEATDWLNALEKQ 98 (98)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcC
Confidence 356778999999999999999763
No 83
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=27.30 E-value=5.4e+02 Score=24.37 Aligned_cols=32 Identities=28% Similarity=0.401 Sum_probs=28.2
Q ss_pred ccEEEEEEeecCCHHHHHHHHHccCCcccccccC
Q 006391 139 GVLVKAVGVIDASADTVFEVVLNLERHQRYEWDM 172 (647)
Q Consensus 139 ~~~~Ka~~vVdaspe~Vfe~L~d~~~~~R~~WD~ 172 (647)
...++.+.+|++||++||+.+.+.+. +.+|=.
T Consensus 7 ~~~~~~er~i~aP~e~Vf~A~Tdpe~--l~~W~~ 38 (149)
T COG3832 7 DRTLEIERLIDAPPEKVFEALTDPEL--LARWFM 38 (149)
T ss_pred CceEEEEEeecCCHHHHHHHhcCHHH--HHhhcC
Confidence 36789999999999999999999875 888876
No 84
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=27.01 E-value=59 Score=29.52 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=25.7
Q ss_pred EEEEEeecCCHHHHHHHHHccCCcccccccCC
Q 006391 142 VKAVGVIDASADTVFEVVLNLERHQRYEWDML 173 (647)
Q Consensus 142 ~Ka~~vVdaspe~Vfe~L~d~~~~~R~~WD~~ 173 (647)
++.+..|++|+++||+.+.+.+. ..+|...
T Consensus 3 i~~~i~i~a~~e~Vw~~~td~~~--~~~W~~~ 32 (145)
T cd08898 3 IERTILIDAPRERVWRALTDPEH--FGQWFGV 32 (145)
T ss_pred eEEEEEecCCHHHHHHHhcChhh--hhhcccc
Confidence 56778999999999999999876 7789875
No 85
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=26.89 E-value=48 Score=29.60 Aligned_cols=20 Identities=15% Similarity=0.454 Sum_probs=18.4
Q ss_pred eecccCHHHHHHHHHHHHHH
Q 006391 14 EIACATAGEARKWMEAFDQA 33 (647)
Q Consensus 14 ~~~~~~~eea~~w~~~~~~~ 33 (647)
++.|.|.||...|++||+.+
T Consensus 82 ~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 82 TFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred EEEeCCHHHHHHHHHHHHhh
Confidence 78899999999999999876
No 86
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=24.96 E-value=71 Score=29.04 Aligned_cols=26 Identities=15% Similarity=0.351 Sum_probs=22.6
Q ss_pred CCCcceeecccCHHHHHHHHHHHHHH
Q 006391 8 DESKKGEIACATAGEARKWMEAFDQA 33 (647)
Q Consensus 8 ~~~~~~~~~~~~~eea~~w~~~~~~~ 33 (647)
..++..-|.|.|-+|+..|+++|..|
T Consensus 75 tp~rt~~l~A~se~e~e~WI~~i~~a 100 (101)
T cd01264 75 TADKTYILKAKDEKNAEEWLQCLNIA 100 (101)
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHhh
Confidence 35667789999999999999999877
No 87
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=22.75 E-value=82 Score=27.63 Aligned_cols=23 Identities=9% Similarity=0.153 Sum_probs=19.7
Q ss_pred CcceeecccCHHHHHHHHHHHHH
Q 006391 10 SKKGEIACATAGEARKWMEAFDQ 32 (647)
Q Consensus 10 ~~~~~~~~~~~eea~~w~~~~~~ 32 (647)
++...|.|.|.+|...|+++|+.
T Consensus 68 ~r~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 68 NVVWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred CeEEEEEeCCHHHHHHHHHHHhh
Confidence 36667889999999999999974
No 88
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=20.51 E-value=88 Score=28.25 Aligned_cols=20 Identities=25% Similarity=0.619 Sum_probs=14.6
Q ss_pred eeecccCHHHHHHHHHHHHH
Q 006391 13 GEIACATAGEARKWMEAFDQ 32 (647)
Q Consensus 13 ~~~~~~~~eea~~w~~~~~~ 32 (647)
.-+.|.+.||+..||++|+.
T Consensus 78 ~y~~~a~~~er~~Wi~~l~~ 97 (98)
T cd01245 78 VYYSCRSSEERDKWIESLQA 97 (98)
T ss_pred EEEEeCCHHHHHHHHHHHhc
Confidence 43444444999999999874
No 89
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=20.48 E-value=1.2e+02 Score=28.19 Aligned_cols=26 Identities=12% Similarity=0.234 Sum_probs=22.9
Q ss_pred CcceeecccCHHHHHHHHHHHHHHHH
Q 006391 10 SKKGEIACATAGEARKWMEAFDQAKQ 35 (647)
Q Consensus 10 ~~~~~~~~~~~eea~~w~~~~~~~~~ 35 (647)
.+..-|-|.|.||+..|+.+|..|+.
T Consensus 87 g~~~lfqA~~~ee~~~Wi~~I~~~~~ 112 (117)
T cd01230 87 WREFLFQTSSLKELQSWIERINVVAA 112 (117)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHH
Confidence 46777889999999999999998875
Done!