Query 006395
Match_columns 647
No_of_seqs 319 out of 707
Neff 3.1
Searched_HMMs 46136
Date Thu Mar 28 22:40:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006395.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006395hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02444 HMP-P synthase 100.0 5E-258 1E-262 2028.7 56.2 632 8-639 2-639 (642)
2 PRK09284 thiamine biosynthesis 100.0 4E-247 8E-252 1943.1 53.1 522 87-634 16-607 (607)
3 COG0422 ThiC Thiamine biosynth 100.0 1E-213 2E-218 1633.3 40.7 426 160-586 2-429 (432)
4 TIGR00190 thiC thiamine biosyn 100.0 5E-207 1E-211 1595.0 43.1 420 161-585 1-422 (423)
5 PRK13352 thiamine biosynthesis 100.0 2E-205 4E-210 1588.0 44.0 421 161-587 1-426 (431)
6 PF01964 ThiC: ThiC family; I 100.0 6E-205 1E-209 1580.2 37.7 418 162-584 1-420 (420)
7 PF13667 ThiC-associated: ThiC 99.9 2.1E-24 4.6E-29 184.8 2.2 65 88-156 1-78 (80)
8 cd00381 IMPDH IMPDH: The catal 93.5 0.89 1.9E-05 48.0 12.0 75 223-322 85-165 (325)
9 cd00945 Aldolase_Class_I Class 92.6 4.3 9.3E-05 37.4 13.7 167 235-450 11-179 (201)
10 cd01299 Met_dep_hydrolase_A Me 91.0 5.6 0.00012 40.5 13.7 175 241-419 46-268 (342)
11 PTZ00242 protein tyrosine phos 88.3 8.7 0.00019 37.0 12.0 133 234-418 27-166 (166)
12 TIGR01306 GMP_reduct_2 guanosi 88.2 6.9 0.00015 42.1 12.3 152 170-386 44-210 (321)
13 TIGR03234 OH-pyruv-isom hydrox 88.1 2.5 5.4E-05 41.6 8.4 81 360-444 83-171 (254)
14 PRK04165 acetyl-CoA decarbonyl 87.9 12 0.00026 42.0 14.4 171 296-482 101-296 (450)
15 COG0422 ThiC Thiamine biosynth 87.6 0.28 6E-06 54.0 1.6 172 401-586 204-424 (432)
16 PF01261 AP_endonuc_2: Xylose 87.2 20 0.00043 33.0 13.2 110 310-443 37-157 (213)
17 cd00945 Aldolase_Class_I Class 86.8 3.6 7.9E-05 37.9 8.2 78 234-322 62-151 (201)
18 cd00019 AP2Ec AP endonuclease 86.1 5.6 0.00012 39.8 9.7 78 361-441 85-166 (279)
19 cd06828 PLPDE_III_DapDC Type I 86.1 21 0.00045 37.3 14.2 63 359-425 186-259 (373)
20 PRK11165 diaminopimelate decar 86.0 32 0.0007 37.4 16.1 206 173-425 14-272 (420)
21 PLN02274 inosine-5'-monophosph 84.5 7.9 0.00017 43.7 11.0 81 217-322 233-321 (505)
22 PRK05458 guanosine 5'-monophos 84.4 12 0.00026 40.4 11.7 109 170-322 47-170 (326)
23 PRK04452 acetyl-CoA decarbonyl 84.3 12 0.00027 40.3 11.8 119 304-438 79-230 (319)
24 cd01297 D-aminoacylase D-amino 83.8 19 0.00041 38.6 13.0 28 261-288 122-150 (415)
25 TIGR03099 dCO2ase_PEP1 pyridox 83.5 65 0.0014 34.3 16.7 172 176-383 15-235 (398)
26 cd00959 DeoC 2-deoxyribose-5-p 82.8 4.5 9.8E-05 39.6 7.3 113 221-343 53-182 (203)
27 PRK08227 autoinducer 2 aldolas 82.0 4.9 0.00011 42.0 7.6 144 281-482 27-177 (264)
28 PF01261 AP_endonuc_2: Xylose 81.4 17 0.00037 33.4 10.1 76 360-436 26-109 (213)
29 cd00429 RPE Ribulose-5-phospha 80.6 53 0.0011 31.2 14.2 78 232-324 7-91 (211)
30 PRK05581 ribulose-phosphate 3- 80.5 57 0.0012 31.5 14.7 179 232-454 11-202 (220)
31 cd00245 Glm_e Coenzyme B12-dep 80.5 2.5 5.3E-05 47.1 5.1 279 235-539 26-340 (428)
32 TIGR01949 AroFGH_arch predicte 80.0 14 0.00031 37.4 10.0 75 237-323 155-230 (258)
33 cd00739 DHPS DHPS subgroup of 80.0 7.6 0.00017 40.0 8.1 182 295-480 19-241 (257)
34 TIGR01496 DHPS dihydropteroate 79.9 8.8 0.00019 39.5 8.5 182 295-480 18-239 (257)
35 PRK09989 hypothetical protein; 79.8 9.5 0.00021 37.9 8.5 77 360-440 84-168 (258)
36 cd02810 DHOD_DHPD_FMN Dihydroo 79.7 13 0.00028 37.7 9.6 85 225-324 103-200 (289)
37 cd00958 DhnA Class I fructose- 79.7 6.4 0.00014 38.8 7.2 96 218-321 57-164 (235)
38 cd06831 PLPDE_III_ODC_like_AZI 78.9 92 0.002 33.9 16.1 95 296-423 146-248 (394)
39 TIGR03128 RuMP_HxlA 3-hexulose 78.6 35 0.00075 32.8 11.7 118 305-485 68-188 (206)
40 PRK07535 methyltetrahydrofolat 78.5 28 0.0006 36.1 11.6 123 294-428 19-167 (261)
41 TIGR02151 IPP_isom_2 isopenten 77.8 23 0.0005 37.6 11.1 136 223-386 116-266 (333)
42 cd04743 NPD_PKS 2-Nitropropane 76.6 5.1 0.00011 43.1 5.9 106 363-482 71-208 (320)
43 PTZ00393 protein tyrosine phos 75.5 44 0.00096 35.1 12.1 115 244-405 110-227 (241)
44 PRK09722 allulose-6-phosphate 75.1 62 0.0013 33.3 12.9 181 220-450 2-197 (229)
45 PRK06843 inosine 5-monophospha 74.9 64 0.0014 36.0 13.8 80 222-328 143-228 (404)
46 PRK09875 putative hydrolase; P 74.7 1.1E+02 0.0024 32.4 15.0 88 234-323 31-122 (292)
47 TIGR01163 rpe ribulose-phospha 74.5 81 0.0018 30.1 12.9 181 231-454 5-197 (210)
48 PTZ00170 D-ribulose-5-phosphat 73.9 5.6 0.00012 40.0 5.1 91 218-326 4-101 (228)
49 PRK09061 D-glutamate deacylase 73.8 90 0.002 35.1 14.8 110 302-460 171-286 (509)
50 cd02811 IDI-2_FMN Isopentenyl- 73.7 64 0.0014 34.3 13.0 137 223-386 115-267 (326)
51 PF01408 GFO_IDH_MocA: Oxidore 73.6 8.5 0.00018 33.2 5.5 92 333-447 26-117 (120)
52 cd02803 OYE_like_FMN_family Ol 73.5 61 0.0013 33.5 12.5 156 236-419 75-246 (327)
53 PRK11613 folP dihydropteroate 73.5 1.3E+02 0.0028 32.0 18.0 24 234-258 35-58 (282)
54 PRK05437 isopentenyl pyrophosp 73.5 35 0.00077 36.7 11.2 169 171-386 77-273 (352)
55 cd04740 DHOD_1B_like Dihydroor 73.3 19 0.00041 36.8 8.8 83 298-418 100-183 (296)
56 COG1082 IolE Sugar phosphate i 72.4 30 0.00065 33.9 9.6 158 240-428 18-184 (274)
57 PRK08883 ribulose-phosphate 3- 72.4 64 0.0014 32.7 12.1 176 230-451 8-196 (220)
58 TIGR02318 phosphono_phnM phosp 71.9 13 0.00028 39.9 7.5 86 359-459 207-304 (376)
59 PRK13404 dihydropyrimidinase; 70.6 50 0.0011 36.6 11.8 127 298-465 133-274 (477)
60 TIGR00693 thiE thiamine-phosph 70.5 38 0.00082 32.3 9.6 123 299-453 12-162 (196)
61 TIGR03006 pepcterm_polyde poly 70.5 15 0.00033 38.0 7.5 114 355-493 22-151 (265)
62 TIGR03151 enACPred_II putative 70.4 40 0.00086 35.6 10.6 117 363-502 76-210 (307)
63 PRK12677 xylose isomerase; Pro 69.9 13 0.00029 40.4 7.2 121 241-381 35-179 (384)
64 cd00950 DHDPS Dihydrodipicolin 69.8 55 0.0012 33.3 11.1 109 295-447 16-130 (284)
65 cd00537 MTHFR Methylenetetrahy 69.7 8.3 0.00018 39.1 5.3 56 230-323 140-195 (274)
66 cd00958 DhnA Class I fructose- 69.1 34 0.00073 33.8 9.2 75 237-323 142-217 (235)
67 cd03315 MLE_like Muconate lact 68.6 1.4E+02 0.003 30.2 16.2 142 220-420 74-237 (265)
68 PRK07028 bifunctional hexulose 67.7 87 0.0019 34.2 12.8 171 231-485 10-192 (430)
69 TIGR00612 ispG_gcpE 1-hydroxy- 67.6 13 0.00029 40.6 6.5 199 229-500 26-243 (346)
70 PRK08745 ribulose-phosphate 3- 67.4 1.5E+02 0.0033 30.4 13.6 186 222-454 5-203 (223)
71 PRK08649 inosine 5-monophospha 66.6 80 0.0017 34.6 12.1 80 243-322 64-163 (368)
72 PTZ00314 inosine-5'-monophosph 65.9 39 0.00084 38.2 9.9 78 220-322 229-314 (495)
73 PRK09989 hypothetical protein; 65.8 29 0.00062 34.6 8.1 120 241-385 19-147 (258)
74 PLN02334 ribulose-phosphate 3- 65.3 20 0.00042 35.7 6.8 78 230-322 13-97 (229)
75 TIGR00542 hxl6Piso_put hexulos 65.1 14 0.0003 37.1 5.8 79 241-321 20-115 (279)
76 TIGR00542 hxl6Piso_put hexulos 64.8 53 0.0012 33.0 9.8 79 360-440 93-172 (279)
77 COG1830 FbaB DhnA-type fructos 64.6 23 0.00049 37.7 7.3 135 300-481 43-184 (265)
78 cd03316 MR_like Mandelate race 64.6 1.5E+02 0.0031 31.1 13.2 155 218-423 124-300 (357)
79 TIGR00587 nfo apurinic endonuc 64.4 7.9 0.00017 39.4 4.0 143 241-386 15-185 (274)
80 cd02931 ER_like_FMN Enoate red 64.1 45 0.00097 36.2 9.7 119 237-368 82-213 (382)
81 PRK07226 fructose-bisphosphate 63.7 29 0.00064 35.5 7.9 161 278-454 21-207 (267)
82 COG0157 NadC Nicotinate-nucleo 63.5 10 0.00022 40.4 4.6 66 240-321 198-263 (280)
83 TIGR01503 MthylAspMut_E methyl 63.1 40 0.00087 38.5 9.3 185 349-551 175-392 (480)
84 cd00127 DSPc Dual specificity 62.9 25 0.00053 31.1 6.3 94 248-372 25-120 (139)
85 PRK05567 inosine 5'-monophosph 62.6 67 0.0015 35.9 10.9 75 220-319 216-296 (486)
86 PRK08323 phenylhydantoinase; V 62.1 2.3E+02 0.0049 30.6 14.4 67 244-321 76-149 (459)
87 PRK07226 fructose-bisphosphate 62.0 38 0.00081 34.7 8.3 101 238-350 160-262 (267)
88 PRK09206 pyruvate kinase; Prov 62.0 44 0.00094 37.9 9.4 95 294-419 167-276 (470)
89 TIGR03586 PseI pseudaminic aci 61.8 1.1E+02 0.0025 33.0 12.1 180 298-492 15-232 (327)
90 TIGR00284 dihydropteroate synt 61.6 2.6E+02 0.0056 32.2 15.3 45 212-260 142-187 (499)
91 COG1082 IolE Sugar phosphate i 61.6 60 0.0013 31.8 9.3 68 362-430 46-113 (274)
92 cd03319 L-Ala-DL-Glu_epimerase 61.1 2.1E+02 0.0045 29.7 14.9 87 219-317 122-208 (316)
93 TIGR00126 deoC deoxyribose-pho 60.6 26 0.00056 35.5 6.7 117 220-343 53-183 (211)
94 PRK13209 L-xylulose 5-phosphat 60.3 48 0.001 33.2 8.5 81 360-442 98-179 (283)
95 TIGR01302 IMP_dehydrog inosine 60.2 1.1E+02 0.0023 34.1 11.9 51 402-459 315-367 (450)
96 PRK07094 biotin synthase; Prov 60.1 1.3E+02 0.0028 31.2 11.8 28 296-323 69-96 (323)
97 smart00518 AP2Ec AP endonuclea 60.0 1.9E+02 0.0041 28.8 12.9 114 302-442 12-129 (273)
98 cd02809 alpha_hydroxyacid_oxid 59.2 2.3E+02 0.005 29.6 16.0 175 235-485 79-258 (299)
99 PRK12677 xylose isomerase; Pro 58.9 30 0.00065 37.8 7.3 82 359-441 112-204 (384)
100 PF01487 DHquinase_I: Type I 3 58.9 30 0.00064 34.1 6.7 162 233-420 6-180 (224)
101 PRK07565 dihydroorotate dehydr 58.6 60 0.0013 34.3 9.3 85 223-324 104-201 (334)
102 PRK09997 hydroxypyruvate isome 58.2 59 0.0013 32.4 8.7 78 360-440 84-168 (258)
103 PTZ00293 thymidine kinase; Pro 57.9 23 0.00049 36.2 5.8 89 300-421 19-110 (211)
104 PRK12595 bifunctional 3-deoxy- 57.7 84 0.0018 34.3 10.4 116 298-447 130-266 (360)
105 PTZ00372 endonuclease 4-like p 57.6 5.2 0.00011 44.4 1.4 154 243-401 147-329 (413)
106 TIGR03572 WbuZ glycosyl amidat 57.1 55 0.0012 32.3 8.2 110 242-384 88-207 (232)
107 PRK01060 endonuclease IV; Prov 56.9 18 0.00038 36.2 4.8 79 243-323 18-112 (281)
108 PRK15446 phosphonate metabolis 56.8 66 0.0014 34.6 9.4 56 355-419 208-273 (383)
109 TIGR01761 thiaz-red thiazoliny 56.0 30 0.00064 37.4 6.6 34 333-368 28-61 (343)
110 TIGR02631 xylA_Arthro xylose i 55.8 1.4E+02 0.003 32.7 11.7 158 240-427 35-221 (382)
111 COG1412 Uncharacterized protei 55.8 12 0.00026 36.0 3.3 16 405-420 108-123 (136)
112 TIGR00284 dihydropteroate synt 55.1 1.2E+02 0.0027 34.7 11.5 127 243-418 221-348 (499)
113 TIGR01928 menC_lowGC/arch o-su 54.7 2.8E+02 0.0061 29.2 13.8 139 298-439 132-296 (324)
114 cd01297 D-aminoacylase D-amino 54.0 2.2E+02 0.0048 30.7 12.7 72 243-325 72-151 (415)
115 cd01306 PhnM PhnM is believed 53.4 17 0.00038 38.8 4.4 51 360-419 162-222 (325)
116 cd04724 Tryptophan_synthase_al 52.4 1.2E+02 0.0026 30.9 9.9 164 233-448 10-192 (242)
117 cd00423 Pterin_binding Pterin 52.4 1.4E+02 0.003 30.6 10.4 141 295-440 19-191 (258)
118 cd01317 DHOase_IIa Dihydroorot 51.3 39 0.00085 35.7 6.6 156 244-424 39-219 (374)
119 PRK09856 fructoselysine 3-epim 51.2 1E+02 0.0022 30.7 9.0 78 360-442 89-173 (275)
120 cd00959 DeoC 2-deoxyribose-5-p 50.9 2.6E+02 0.0055 27.6 15.1 167 236-454 15-185 (203)
121 PLN02520 bifunctional 3-dehydr 50.9 81 0.0018 35.8 9.3 92 220-321 22-118 (529)
122 cd00740 MeTr MeTr subgroup of 50.9 1.2E+02 0.0025 31.5 9.7 123 295-428 21-171 (252)
123 cd01302 Cyclic_amidohydrolases 50.8 86 0.0019 32.9 8.9 148 243-428 30-185 (337)
124 TIGR02631 xylA_Arthro xylose i 50.6 28 0.0006 38.0 5.5 142 298-440 30-204 (382)
125 cd03316 MR_like Mandelate race 50.4 1.4E+02 0.0029 31.4 10.2 26 298-323 139-164 (357)
126 cd00530 PTE Phosphotriesterase 49.8 2.9E+02 0.0062 27.9 15.0 78 234-316 29-113 (293)
127 PRK08005 epimerase; Validated 49.6 32 0.00069 35.0 5.4 122 222-379 2-135 (210)
128 TIGR01361 DAHP_synth_Bsub phos 49.3 1.2E+02 0.0025 31.7 9.4 158 298-489 37-238 (260)
129 PRK12361 hypothetical protein; 49.2 57 0.0012 36.7 7.7 122 239-403 112-233 (547)
130 PF00834 Ribul_P_3_epim: Ribul 48.3 44 0.00096 33.5 6.1 169 222-431 1-181 (201)
131 PRK06106 nicotinate-nucleotide 48.1 34 0.00074 36.3 5.5 63 241-321 205-267 (281)
132 PRK05286 dihydroorotate dehydr 47.8 82 0.0018 33.7 8.3 105 296-425 221-329 (344)
133 cd02801 DUS_like_FMN Dihydrour 47.8 69 0.0015 31.1 7.1 23 300-322 138-160 (231)
134 PRK09237 dihydroorotase; Provi 47.7 28 0.00062 36.6 4.8 167 244-431 75-255 (380)
135 PRK09997 hydroxypyruvate isome 47.5 2E+02 0.0044 28.7 10.6 86 302-426 17-110 (258)
136 PRK01207 methionine synthase; 47.4 16 0.00036 39.6 3.1 91 301-423 38-129 (343)
137 TIGR02478 6PF1K_euk 6-phosphof 47.1 23 0.0005 42.1 4.5 100 302-414 19-138 (745)
138 smart00195 DSPc Dual specifici 46.9 1.2E+02 0.0026 27.2 8.0 112 245-402 21-134 (138)
139 TIGR03234 OH-pyruv-isom hydrox 46.9 1.4E+02 0.003 29.5 9.2 64 362-427 40-110 (254)
140 PF01207 Dus: Dihydrouridine s 46.5 23 0.0005 37.2 3.9 51 263-322 110-160 (309)
141 TIGR03470 HpnH hopanoid biosyn 46.4 1.2E+02 0.0026 32.0 9.1 130 295-451 57-199 (318)
142 PRK09856 fructoselysine 3-epim 46.4 3.1E+02 0.0067 27.3 11.6 64 362-426 48-115 (275)
143 TIGR01859 fruc_bis_ald_ fructo 46.2 13 0.00029 38.8 2.2 124 240-404 87-223 (282)
144 PRK13813 orotidine 5'-phosphat 45.9 97 0.0021 30.3 7.9 59 307-373 74-138 (215)
145 COG2513 PrpB PEP phosphonomuta 45.6 44 0.00096 36.0 5.8 120 236-373 165-287 (289)
146 cd04739 DHOD_like Dihydroorota 45.0 57 0.0012 34.6 6.6 175 235-469 110-302 (325)
147 KOG3111 D-ribulose-5-phosphate 44.5 54 0.0012 34.1 6.0 157 231-427 14-180 (224)
148 PRK06354 pyruvate kinase; Prov 43.9 1.3E+02 0.0029 35.1 9.7 97 294-419 173-282 (590)
149 cd02932 OYE_YqiM_FMN Old yello 43.6 1.5E+02 0.0032 31.4 9.3 28 296-323 237-264 (336)
150 PRK13210 putative L-xylulose 5 43.4 1.9E+02 0.0041 28.8 9.6 91 360-457 93-184 (284)
151 PRK06978 nicotinate-nucleotide 43.4 48 0.001 35.6 5.7 64 240-321 215-278 (294)
152 PRK00507 deoxyribose-phosphate 43.3 56 0.0012 33.3 6.0 120 218-343 55-187 (221)
153 cd00377 ICL_PEPM Members of th 43.3 80 0.0017 32.3 7.1 76 234-326 157-232 (243)
154 TIGR01949 AroFGH_arch predicte 43.3 93 0.002 31.7 7.6 114 278-419 18-141 (258)
155 PRK10415 tRNA-dihydrouridine s 43.2 95 0.0021 33.0 7.9 23 300-322 149-171 (321)
156 cd01305 archeal_chlorohydrolas 42.8 3.6E+02 0.0078 27.0 13.7 102 302-442 127-242 (263)
157 PLN02819 lysine-ketoglutarate 42.8 35 0.00077 42.1 5.2 81 358-465 633-714 (1042)
158 PF00265 TK: Thymidine kinase; 42.4 4.4 9.5E-05 39.5 -1.9 92 300-421 16-110 (176)
159 PRK13207 ureC urease subunit a 42.2 95 0.0021 36.2 8.2 58 302-400 202-259 (568)
160 PRK06852 aldolase; Validated 41.7 35 0.00077 36.7 4.5 179 302-532 61-252 (304)
161 cd04738 DHOD_2_like Dihydrooro 41.7 94 0.002 32.9 7.6 87 296-402 212-300 (327)
162 cd00288 Pyruvate_Kinase Pyruva 41.7 1.3E+02 0.0029 34.2 9.1 97 294-419 169-277 (480)
163 PRK09016 quinolinate phosphori 41.6 52 0.0011 35.3 5.7 64 240-321 218-281 (296)
164 TIGR02026 BchE magnesium-proto 41.2 2.6E+02 0.0056 31.4 11.2 133 293-441 218-366 (497)
165 TIGR02033 D-hydantoinase D-hyd 41.2 4.8E+02 0.01 28.0 13.7 18 243-260 77-94 (454)
166 TIGR03569 NeuB_NnaB N-acetylne 41.0 80 0.0017 34.2 7.0 77 235-321 14-97 (329)
167 smart00518 AP2Ec AP endonuclea 40.8 12 0.00027 37.1 1.0 83 241-324 14-108 (273)
168 PRK08185 hypothetical protein; 40.8 33 0.00072 36.4 4.1 32 239-270 80-115 (283)
169 PRK03906 mannonate dehydratase 40.8 1.9E+02 0.0042 32.0 10.0 134 279-420 63-233 (385)
170 PRK05848 nicotinate-nucleotide 40.6 47 0.001 35.0 5.1 69 239-322 191-259 (273)
171 PF02126 PTE: Phosphotriestera 39.5 9.2 0.0002 40.6 -0.2 89 235-325 36-128 (308)
172 COG0331 FabD (acyl-carrier-pro 39.2 1.3E+02 0.0029 32.3 8.3 111 182-317 136-259 (310)
173 PRK08417 dihydroorotase; Provi 38.8 77 0.0017 34.0 6.5 60 395-497 176-238 (386)
174 PRK05927 hypothetical protein; 38.5 32 0.00069 37.2 3.6 49 184-256 255-303 (350)
175 PF00728 Glyco_hydro_20: Glyco 38.2 29 0.00063 35.8 3.2 27 296-322 14-40 (351)
176 PRK00366 ispG 4-hydroxy-3-meth 38.2 2.3E+02 0.0049 31.7 9.9 215 214-499 21-251 (360)
177 PRK07315 fructose-bisphosphate 38.1 25 0.00054 37.2 2.7 73 240-322 89-175 (293)
178 PRK03170 dihydrodipicolinate s 37.8 4.6E+02 0.01 27.0 11.6 105 295-443 17-125 (292)
179 cd03174 DRE_TIM_metallolyase D 37.8 2.9E+02 0.0064 27.2 9.9 149 295-502 14-182 (265)
180 PRK10076 pyruvate formate lyas 37.7 55 0.0012 33.0 4.9 56 361-430 19-83 (213)
181 cd04730 NPD_like 2-Nitropropan 37.5 4E+02 0.0087 26.0 12.8 85 405-501 113-204 (236)
182 PRK05826 pyruvate kinase; Prov 37.5 1.1E+02 0.0023 34.8 7.6 94 295-419 169-277 (465)
183 TIGR01856 hisJ_fam histidinol 37.5 34 0.00073 34.6 3.4 60 357-426 181-241 (253)
184 cd02803 OYE_like_FMN_family Ol 36.8 1.5E+02 0.0033 30.6 8.1 78 297-403 225-302 (327)
185 TIGR02319 CPEP_Pphonmut carbox 36.7 1.3E+02 0.0029 32.1 7.8 81 234-329 162-242 (294)
186 cd06660 Aldo_ket_red Aldo-keto 36.7 1.9E+02 0.0042 28.8 8.5 144 235-388 27-210 (285)
187 PRK08091 ribulose-phosphate 3- 36.1 5.2E+02 0.011 26.9 13.4 184 220-452 12-209 (228)
188 cd08616 PI-PLCXD1c Catalytic d 36.1 1.6E+02 0.0034 31.0 8.1 93 305-420 63-173 (290)
189 PRK01130 N-acetylmannosamine-6 36.0 1.6E+02 0.0034 29.0 7.7 62 241-320 79-146 (221)
190 TIGR00737 nifR3_yhdG putative 36.0 1.1E+02 0.0024 32.1 6.9 20 235-254 73-92 (319)
191 PLN02716 nicotinate-nucleotide 35.8 71 0.0015 34.6 5.6 65 240-321 213-291 (308)
192 PRK06801 hypothetical protein; 35.7 28 0.00062 36.8 2.7 80 240-322 87-178 (286)
193 PRK15072 bifunctional D-altron 35.6 2.8E+02 0.006 30.3 10.1 65 356-420 238-314 (404)
194 COG0269 SgbH 3-hexulose-6-phos 35.3 3.4E+02 0.0073 28.5 10.0 113 243-399 73-206 (217)
195 cd04733 OYE_like_2_FMN Old yel 35.2 4.8E+02 0.01 27.7 11.6 161 234-420 78-254 (338)
196 PF12244 DUF3606: Protein of u 35.1 38 0.00083 27.9 2.8 23 174-196 21-43 (57)
197 PRK06559 nicotinate-nucleotide 34.9 79 0.0017 33.9 5.8 63 241-321 208-270 (290)
198 PLN02537 diaminopimelate decar 34.8 6.2E+02 0.013 27.4 13.1 96 296-424 162-269 (410)
199 TIGR02482 PFKA_ATP 6-phosphofr 34.7 42 0.0009 35.8 3.7 70 302-376 18-93 (301)
200 PRK06543 nicotinate-nucleotide 34.6 69 0.0015 34.1 5.3 63 241-321 204-266 (281)
201 PF07302 AroM: AroM protein; 34.2 58 0.0013 33.8 4.5 88 243-330 80-196 (221)
202 PRK08227 autoinducer 2 aldolas 34.1 92 0.002 32.9 6.0 100 243-357 164-264 (264)
203 cd04724 Tryptophan_synthase_al 34.0 3.7E+02 0.0081 27.3 10.2 59 357-432 86-147 (242)
204 PRK13317 pantothenate kinase; 34.0 2.1E+02 0.0045 30.2 8.6 129 331-474 116-273 (277)
205 PRK06886 hypothetical protein; 33.5 3.8E+02 0.0083 28.9 10.6 94 283-379 48-180 (329)
206 PRK11320 prpB 2-methylisocitra 32.9 2.2E+02 0.0047 30.6 8.6 77 235-326 164-240 (292)
207 TIGR00288 conserved hypothetic 32.9 1.5E+02 0.0033 29.4 6.9 42 382-423 79-138 (160)
208 PRK07028 bifunctional hexulose 32.9 4.3E+02 0.0094 29.0 11.1 68 242-324 73-142 (430)
209 PF01729 QRPTase_C: Quinolinat 32.9 36 0.00078 33.4 2.7 63 241-319 91-154 (169)
210 PRK00957 methionine synthase; 32.6 81 0.0018 32.7 5.3 176 300-489 36-227 (305)
211 cd00331 IGPS Indole-3-glycerol 32.6 1.2E+02 0.0025 29.7 6.2 79 237-317 31-125 (217)
212 TIGR03128 RuMP_HxlA 3-hexulose 32.6 92 0.002 30.0 5.4 65 243-323 69-136 (206)
213 cd06568 GH20_SpHex_like A subg 32.4 29 0.00063 37.0 2.1 24 402-425 76-101 (329)
214 PRK12858 tagatose 1,6-diphosph 32.3 3.2E+02 0.0069 29.9 9.8 155 298-455 47-253 (340)
215 PRK07328 histidinol-phosphatas 32.1 1.1E+02 0.0023 31.3 6.0 136 255-428 87-235 (269)
216 PRK02227 hypothetical protein; 32.1 1.6E+02 0.0034 31.1 7.2 157 240-421 10-187 (238)
217 PRK07535 methyltetrahydrofolat 32.0 5.3E+02 0.012 26.9 11.0 150 234-419 22-194 (261)
218 PRK02412 aroD 3-dehydroquinate 31.9 1.1E+02 0.0025 31.3 6.2 99 213-321 9-117 (253)
219 TIGR03826 YvyF flagellar opero 31.9 56 0.0012 31.6 3.7 33 175-207 48-80 (137)
220 cd04722 TIM_phosphate_binding 31.8 3.8E+02 0.0083 24.1 10.4 132 300-484 12-144 (200)
221 PRK07572 cytosine deaminase; V 31.7 2E+02 0.0044 31.1 8.3 44 360-416 190-235 (426)
222 PF03060 NMO: Nitronate monoox 31.3 42 0.00091 35.5 3.1 105 394-514 126-247 (330)
223 cd04734 OYE_like_3_FMN Old yel 31.3 4.6E+02 0.01 28.1 10.7 135 300-454 141-296 (343)
224 COG2070 Dioxygenases related t 31.0 6E+02 0.013 27.6 11.6 136 356-515 89-242 (336)
225 PRK13206 ureC urease subunit a 30.9 1.7E+02 0.0036 34.4 7.9 78 304-426 210-289 (573)
226 TIGR00347 bioD dethiobiotin sy 30.9 2.1E+02 0.0046 26.4 7.2 65 410-483 97-164 (166)
227 cd03318 MLE Muconate Lactonizi 30.8 6.8E+02 0.015 26.6 11.9 121 217-381 160-297 (365)
228 PRK13523 NADPH dehydrogenase N 30.6 5.8E+02 0.012 27.6 11.3 159 235-423 78-249 (337)
229 TIGR03855 NAD_NadX aspartate d 30.5 58 0.0013 33.3 3.8 176 335-556 4-185 (229)
230 PRK01060 endonuclease IV; Prov 30.4 5E+02 0.011 26.0 10.3 98 302-426 14-114 (281)
231 cd06839 PLPDE_III_Btrk_like Ty 30.3 6.7E+02 0.015 26.4 13.1 26 297-322 151-177 (382)
232 PF02581 TMP-TENI: Thiamine mo 30.1 91 0.002 29.9 4.8 55 297-381 9-63 (180)
233 cd02742 GH20_hexosaminidase Be 30.0 33 0.00072 35.8 2.0 27 296-322 12-38 (303)
234 KOG1282 Serine carboxypeptidas 29.9 54 0.0012 37.1 3.8 32 417-448 420-452 (454)
235 cd07197 nitrilase Nitrilase su 29.9 1.4E+02 0.0029 28.9 6.0 67 300-382 18-84 (253)
236 COG1387 HIS2 Histidinol phosph 29.9 4.1E+02 0.0089 27.1 9.7 94 295-427 106-199 (237)
237 PF03102 NeuB: NeuB family; I 29.7 41 0.00088 34.8 2.6 185 243-480 2-198 (241)
238 PRK06740 histidinol-phosphatas 29.6 1.1E+02 0.0024 32.8 5.8 86 233-324 121-225 (331)
239 cd02929 TMADH_HD_FMN Trimethyl 29.6 2.5E+02 0.0055 30.4 8.6 122 236-370 81-214 (370)
240 cd00502 DHQase_I Type I 3-dehy 29.2 1.6E+02 0.0034 29.3 6.5 67 250-322 24-98 (225)
241 cd01948 EAL EAL domain. This d 29.2 1.3E+02 0.0028 28.5 5.6 60 363-422 134-210 (240)
242 PRK07107 inosine 5-monophospha 29.1 89 0.0019 35.6 5.3 63 238-319 242-311 (502)
243 PF13714 PEP_mutase: Phosphoen 28.8 1.2E+02 0.0026 31.3 5.7 77 233-328 151-227 (238)
244 TIGR02317 prpB methylisocitrat 28.8 47 0.001 35.2 2.9 80 235-329 159-238 (285)
245 PRK06267 hypothetical protein; 28.6 7.7E+02 0.017 26.6 12.7 33 484-516 210-242 (350)
246 TIGR00737 nifR3_yhdG putative 28.5 7.1E+02 0.015 26.2 15.1 146 297-479 72-225 (319)
247 PRK07896 nicotinate-nucleotide 28.4 1E+02 0.0022 33.0 5.3 63 242-321 211-275 (289)
248 PRK08385 nicotinate-nucleotide 28.2 76 0.0017 33.7 4.3 69 239-321 191-260 (278)
249 TIGR01037 pyrD_sub1_fam dihydr 27.9 2.3E+02 0.005 29.2 7.6 27 298-324 167-193 (300)
250 TIGR02320 PEP_mutase phosphoen 27.7 1.6E+02 0.0036 31.2 6.6 76 235-326 167-246 (285)
251 TIGR02826 RNR_activ_nrdG3 anae 27.3 1.4E+02 0.003 28.6 5.5 70 362-455 47-121 (147)
252 COG0036 Rpe Pentose-5-phosphat 27.3 1.5E+02 0.0033 30.9 6.1 175 230-451 12-198 (220)
253 PF01180 DHO_dh: Dihydroorotat 27.2 1.3E+02 0.0029 31.0 5.8 91 219-318 95-194 (295)
254 PRK09061 D-glutamate deacylase 27.2 3.4E+02 0.0073 30.7 9.3 91 297-425 196-286 (509)
255 PRK08508 biotin synthase; Prov 27.0 6.9E+02 0.015 26.0 10.9 23 297-319 40-62 (279)
256 TIGR01093 aroD 3-dehydroquinat 26.7 4.5E+02 0.0098 26.4 9.2 152 233-402 8-169 (228)
257 cd06570 GH20_chitobiase-like_1 26.7 52 0.0011 35.0 2.8 25 297-321 15-39 (311)
258 PF10515 APP_amyloid: beta-amy 26.7 12 0.00026 31.2 -1.4 18 347-364 35-52 (52)
259 cd04726 KGPDC_HPS 3-Keto-L-gul 26.6 5.7E+02 0.012 24.4 9.5 17 306-322 70-86 (202)
260 PRK13308 ureC urease subunit a 26.6 1.8E+02 0.0039 34.2 7.1 120 244-426 149-283 (569)
261 TIGR01048 lysA diaminopimelate 26.5 8.3E+02 0.018 26.3 15.2 28 296-323 170-198 (417)
262 TIGR00555 panK_eukar pantothen 26.4 1.2E+02 0.0025 32.4 5.3 126 331-471 121-278 (279)
263 TIGR02967 guan_deamin guanine 25.8 3.5E+02 0.0076 28.7 8.7 98 295-419 181-293 (401)
264 PRK07259 dihydroorotate dehydr 25.4 7.7E+02 0.017 25.5 11.6 25 299-323 168-192 (301)
265 cd01482 vWA_collagen_alphaI-XI 25.4 2.4E+02 0.0052 26.1 6.6 23 300-322 117-139 (164)
266 cd02810 DHOD_DHPD_FMN Dihydroo 25.3 2.4E+02 0.0052 28.7 7.1 82 298-419 109-194 (289)
267 TIGR02109 PQQ_syn_pqqE coenzym 25.1 1.8E+02 0.004 30.5 6.4 29 294-322 34-62 (358)
268 TIGR00676 fadh2 5,10-methylene 25.1 7.9E+02 0.017 25.5 12.6 53 233-323 140-192 (272)
269 PRK05742 nicotinate-nucleotide 25.1 1.7E+02 0.0038 31.0 6.2 63 241-321 200-262 (277)
270 PRK11815 tRNA-dihydrouridine s 25.0 2.6E+02 0.0057 29.9 7.6 26 297-322 148-173 (333)
271 COG1099 Predicted metal-depend 25.0 1.3E+02 0.0028 32.0 5.2 78 360-442 45-151 (254)
272 cd00363 PFK Phosphofructokinas 24.7 86 0.0019 33.8 4.0 74 302-380 19-100 (338)
273 cd04732 HisA HisA. Phosphorib 24.6 82 0.0018 30.8 3.6 78 240-321 85-167 (234)
274 cd00764 Eukaryotic_PFK Phospho 24.5 72 0.0016 38.4 3.7 79 291-376 398-480 (762)
275 COG2120 Uncharacterized protei 24.5 2.4E+02 0.0052 28.8 6.9 83 375-466 44-131 (237)
276 PRK13523 NADPH dehydrogenase N 24.4 81 0.0018 33.8 3.8 28 296-323 223-250 (337)
277 cd03315 MLE_like Muconate lact 24.4 7.5E+02 0.016 25.0 11.3 109 237-381 113-238 (265)
278 COG1387 HIS2 Histidinol phosph 24.3 77 0.0017 32.3 3.4 35 363-397 175-210 (237)
279 cd01298 ATZ_TRZ_like TRZ/ATZ f 24.2 2.6E+02 0.0056 29.1 7.3 19 242-260 106-124 (411)
280 PF07503 zf-HYPF: HypF finger; 24.2 32 0.0007 26.3 0.5 21 545-575 11-31 (35)
281 PRK03202 6-phosphofructokinase 24.2 85 0.0019 33.7 3.9 74 303-381 21-102 (320)
282 TIGR03550 F420_cofG 7,8-dideme 24.0 8.8E+02 0.019 25.7 15.2 31 296-326 34-64 (322)
283 PRK08255 salicylyl-CoA 5-hydro 23.8 4.1E+02 0.0088 31.6 9.5 108 293-424 537-662 (765)
284 cd03321 mandelate_racemase Man 23.5 1.6E+02 0.0034 31.3 5.7 121 298-418 141-292 (355)
285 PRK00043 thiE thiamine-phospha 23.5 6.5E+02 0.014 24.0 9.5 67 405-484 115-189 (212)
286 cd01292 metallo-dependent_hydr 23.4 3.5E+02 0.0075 25.4 7.3 105 242-379 40-151 (275)
287 TIGR02483 PFK_mixed phosphofru 23.0 83 0.0018 33.8 3.5 72 304-380 20-102 (324)
288 TIGR02708 L_lactate_ox L-lacta 23.0 5.2E+02 0.011 28.7 9.5 37 240-277 149-186 (367)
289 TIGR02351 thiH thiazole biosyn 22.9 2.2E+02 0.0048 30.7 6.7 24 295-318 101-124 (366)
290 PRK05283 deoxyribose-phosphate 22.7 2E+02 0.0043 30.5 6.1 98 220-322 66-169 (257)
291 TIGR00735 hisF imidazoleglycer 22.7 4E+02 0.0087 27.1 8.1 78 241-321 87-176 (254)
292 PF01791 DeoC: DeoC/LacD famil 22.6 2.2E+02 0.0047 28.5 6.2 160 296-499 14-180 (236)
293 cd04727 pdxS PdxS is a subunit 22.6 86 0.0019 33.8 3.5 58 240-317 18-91 (283)
294 cd06563 GH20_chitobiase-like T 22.6 63 0.0014 34.6 2.5 26 296-321 14-39 (357)
295 KOG2499 Beta-N-acetylhexosamin 22.5 68 0.0015 37.1 2.8 24 403-426 252-277 (542)
296 cd06543 GH18_PF-ChiA-like PF-C 22.5 2.5E+02 0.0054 29.8 6.8 90 373-467 68-165 (294)
297 PF06368 Met_asp_mut_E: Methyl 22.5 1.2E+02 0.0026 34.6 4.7 178 349-543 136-346 (441)
298 cd00764 Eukaryotic_PFK Phospho 22.5 73 0.0016 38.3 3.2 117 291-421 12-148 (762)
299 PRK07428 nicotinate-nucleotide 22.4 1.6E+02 0.0035 31.4 5.5 68 240-324 206-275 (288)
300 cd03329 MR_like_4 Mandelate ra 22.4 2.9E+02 0.0062 29.6 7.3 124 298-421 143-299 (368)
301 cd01822 Lysophospholipase_L1_l 22.3 4.6E+02 0.01 23.7 7.7 72 362-442 55-132 (177)
302 PRK09613 thiH thiamine biosynt 22.2 3.3E+02 0.0071 31.1 8.0 178 295-529 113-330 (469)
303 TIGR01224 hutI imidazoloneprop 22.1 5.2E+02 0.011 27.0 9.0 107 295-434 192-305 (377)
304 PLN02795 allantoinase 22.1 1.6E+02 0.0036 33.1 5.7 56 361-416 212-280 (505)
305 cd00019 AP2Ec AP endonuclease 21.9 8.2E+02 0.018 24.6 13.0 66 361-427 45-111 (279)
306 TIGR02478 6PF1K_euk 6-phosphof 21.9 76 0.0016 38.0 3.2 79 291-376 398-480 (745)
307 PRK06846 putative deaminase; V 21.8 6.2E+02 0.014 27.3 9.7 40 361-421 267-310 (410)
308 PF01791 DeoC: DeoC/LacD famil 21.8 3.5E+02 0.0076 27.0 7.4 119 222-344 56-202 (236)
309 KOG0846 Mitochondrial/chloropl 21.8 31 0.00067 36.8 0.0 39 390-428 111-149 (274)
310 cd00763 Bacterial_PFK Phosphof 21.8 95 0.0021 33.4 3.6 74 302-380 19-100 (317)
311 PRK07259 dihydroorotate dehydr 21.7 3.9E+02 0.0085 27.6 7.9 84 297-418 101-186 (301)
312 COG0167 PyrD Dihydroorotate de 21.7 2.2E+02 0.0047 31.0 6.3 190 225-471 97-308 (310)
313 PRK06852 aldolase; Validated 21.7 3.2E+02 0.007 29.7 7.5 97 242-350 193-298 (304)
314 cd04740 DHOD_1B_like Dihydroor 21.5 4.7E+02 0.01 26.9 8.4 77 235-324 100-190 (296)
315 PRK11815 tRNA-dihydrouridine s 21.3 4.4E+02 0.0095 28.3 8.4 92 298-419 75-169 (333)
316 PF13481 AAA_25: AAA domain; P 21.2 1.6E+02 0.0035 27.4 4.7 59 360-420 126-185 (193)
317 PRK13209 L-xylulose 5-phosphat 21.1 4.5E+02 0.0098 26.3 8.0 101 295-423 19-121 (283)
318 PF02449 Glyco_hydro_42: Beta- 21.1 1.1E+02 0.0024 32.5 4.0 61 295-379 5-65 (374)
319 PRK13210 putative L-xylulose 5 20.9 8.4E+02 0.018 24.3 10.6 99 294-421 13-114 (284)
320 PF03746 LamB_YcsF: LamB/YcsF 20.8 83 0.0018 33.1 2.9 78 220-311 1-91 (242)
321 CHL00120 psaL photosystem I su 20.7 29 0.00064 34.0 -0.3 45 444-489 60-105 (143)
322 PRK07213 chlorohydrolase; Prov 20.6 1E+03 0.023 25.3 12.0 97 295-420 174-282 (375)
323 TIGR00343 pyridoxal 5'-phospha 20.6 81 0.0017 34.1 2.8 58 240-317 20-93 (287)
324 cd04735 OYE_like_4_FMN Old yel 20.6 1.1E+02 0.0024 32.7 3.9 28 296-323 231-258 (353)
325 PRK10017 colanic acid biosynth 20.6 3.8E+02 0.0082 29.9 8.0 85 334-429 68-163 (426)
326 cd02911 arch_FMN Archeal FMN-b 20.5 3.3E+02 0.0072 27.8 7.0 77 218-322 141-222 (233)
327 KOG0573 Asparagine synthase [A 20.5 67 0.0014 36.9 2.3 55 220-289 322-380 (520)
328 TIGR00674 dapA dihydrodipicoli 20.3 9.6E+02 0.021 24.7 12.0 90 295-427 14-107 (285)
329 PF13240 zinc_ribbon_2: zinc-r 20.2 45 0.00098 23.2 0.6 10 564-573 12-21 (23)
No 1
>PLN02444 HMP-P synthase
Probab=100.00 E-value=4.7e-258 Score=2028.69 Aligned_cols=632 Identities=88% Similarity=1.417 Sum_probs=603.0
Q ss_pred hhHHHHhcCCCCCCCCCCCccccCCcccccccccc----cccccccc--ccccccCCCCCCCCCCCCccCCCCCCCCCCC
Q 006395 8 TTSIVCKNGIHSTPAKLPSTSFLPGFDVVACKKEI----CSSMSSGI--SAALTFDPPTANSKNTGQRKHTADPASPDFL 81 (647)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (647)
+.+.+++..++.+.++++++++++||..++..... ..++..++ ..+..+.++..+.....+++|++||++|+|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (642)
T PLN02444 2 LLSVVCNNANSSAPLKLPNSSLLPGFDVVVRAQALAVSAARLKKESTATRATLTFDPPTGNSEKAKQTKPTVDPSAPDFL 81 (642)
T ss_pred ccchHhhccCCcccccccccccccccccccccccccccccccccccccchhhhccCCcccccccccccCCCcCCCCCCCC
Confidence 45677889999999999999999999988744333 33444333 3333444445555688899999999999999
Q ss_pred CCCcccccCCCCceEeeccccCCCCCccccccEEEeecCCCCccccccCCCCCCCCcCCCCCCCCchhhhhhhhcCCCcc
Q 006395 82 PLPSFEQCFPKSSKEYREITHEESGHILQVPFRRIHLSGDEPNFDTYDTSGPQNISPRVGLPKLRKDWIDRREKLGAPRY 161 (647)
Q Consensus 82 ~~~~~~~~~p~S~KiY~~~~~~g~~~~lrVP~ReI~Ls~~~p~~~vYDTSGPy~id~~~GLp~lR~~Wi~~R~~~~~~~~ 161 (647)
|+++|..+||+|+|+|+++.+.+++++||||||+|+|++++++|+||||||||.||+++|||++|.+||.+|++..+.++
T Consensus 82 ~~~~~~~~~p~s~k~y~~~~~~~s~~~~~v~~r~i~l~~~~~~~~~ydtsgp~~~d~~~gl~~~r~~w~~~r~~~~~~~~ 161 (642)
T PLN02444 82 PIPSFEECFPKSTKEYKEVVHEESGHVLKVPFRRVHLSGDEPHFDNYDTSGPQNIDPRIGLPKLRKEWIDRREKLGTPRY 161 (642)
T ss_pred cCCCCCCCCCCCceEeeCCccCCCCCCCcccceEEEeCCCCCCcCcccCCCCcccchhcCChhhhHHHHhcccccCCCcc
Confidence 99999999999999999998777789999999999999999999999999999999999999999999999999888999
Q ss_pred cHHHHHHcCCCCHHHHHHHHHcCCCHHHHHHHHhcceEEEecCCCCCCCCceEeecCCceeEeeccccCCCCCChHHHHH
Q 006395 162 TQMYYAKQGVITEEMLYCATREKLDPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVY 241 (647)
Q Consensus 162 TQm~~Ar~GiIT~EMe~VA~~E~i~pE~vR~~VA~GraVIPaN~nh~~~~p~~IG~g~~tKVNANIGtS~~~~~ie~Eve 241 (647)
|||++||+|+|||||++||++||++|||||++||+||+|||+|+|||+++||+||+||+||||||||||++.+|+++|||
T Consensus 162 TQm~~Ar~GiIT~EMe~VA~~E~v~pE~vR~~VA~Gr~VIPaN~nh~~~~p~~IG~gl~tKVNANIGtS~~~s~ie~Eve 241 (642)
T PLN02444 162 TQMYYAKQGIITEEMLYCATREKLDPEFVRSEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVTSSIEEEVY 241 (642)
T ss_pred hHHHHHhcCCCCHHHHHHHHHcCCCHHHHHHHHhCceEEEecCCCCCCCCceEecCCceeEEeeeecCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEEec
Q 006395 242 KVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHA 321 (647)
Q Consensus 242 Kl~~A~~~GADtvMDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGVDf~TIHa 321 (647)
|++||++||||||||||||+||++||+|||+||||||||||||||+++++|.+++||||+|||+|++||+||||||||||
T Consensus 242 K~~~A~~~GADTvMDLSTGgdi~~iR~~Il~~spvPVGTVPIYqA~~~~~~~~~~lt~d~~~d~ieeQaeqGVDfmTIH~ 321 (642)
T PLN02444 242 KLQWATMWGADTVMDLSTGRHIHETREWILRNSPVPVGTVPIYQALEKVDGIAENLTWEVFRETLIEQAEQGVDYFTIHA 321 (642)
T ss_pred HHHHHHHcCCCeEeeccCCCCHHHHHHHHHHcCCCCccCccHHHHHHHhcCChhhCCHHHHHHHHHHHHHhCCCEEEECh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHH
Q 006395 322 GVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELL 401 (647)
Q Consensus 322 Gv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~ 401 (647)
||+++++++..+|+|||||||||||++||++|++|||||+|||||||||++||||||||||||||||+||||+|||+||+
T Consensus 322 Gv~~~~v~~~~~R~tgIVSRGGSi~a~Wml~~~kENPlYe~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL~ 401 (642)
T PLN02444 322 GVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDDILDICNQYDIALSIGDGLRPGSIYDANDTAQFAELL 401 (642)
T ss_pred hhHHHHHHHHhCcccCceeCCcHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCeeeeccCCcCCCccccCCcHHHHHHHH
Confidence 99999999988999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCccccccCCCchhHHHhHHHHHhhhcccceee
Q 006395 402 TQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALLC 481 (647)
Q Consensus 402 ~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~nv~lqk~lc~~APfYvLGPLvTDIApGYDHItsAIGaA~aa~~Gad~LC 481 (647)
+|||||+|||++|||||||||||||||+|++||++||++|++|||||||||||||||||||||||||||+|||+||||||
T Consensus 402 tLGELtkrA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfYvLGPLvTDIAPGYDHItsAIGaAiaa~~GadfLC 481 (642)
T PLN02444 402 TQGELTRRAWEKDVQVMNEGPGHVPLHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALLC 481 (642)
T ss_pred HHHHHHHHHHHcCCeEEEECCCcCcHHHHHHHHHHHHHhhCCCCceecCCcccccCCCchHHHHHHHHHHHHHcCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCchhhcCCCChhHHHHHHHHHHHHHhHhhhhcCCcchhhHHHHHHHHHhhcChHHHHhhcCChHHHHhhhhccCCCCC
Q 006395 482 YVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPLAQTWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETLPSEG 561 (647)
Q Consensus 482 YVTPaEHLgLP~~eDVreGViA~kIAAHaaDlaKg~p~A~~rD~~mS~AR~~~dWe~Qf~LalDPe~Ar~~~~~~~p~~~ 561 (647)
||||||||||||+||||+|||||||||||||||||+|+|++||++||+||++|||++||+||||||+||+||++++|.+.
T Consensus 482 YVTPaEHLgLP~~eDVreGVIA~KIAAHAaDlaKg~p~A~~rD~~mS~AR~~~dWe~Qf~LaLDPe~Ar~~~~e~~p~~~ 561 (642)
T PLN02444 482 YVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPHAQAWDDALSKARFEFRWMDQFALSLDPVTAMSFHDETLPSEG 561 (642)
T ss_pred ecChHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHCCHHHHHHHcCCHHHHHHHHHhcCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCCCCcchhhhhHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccCCcccCCcCCeeeecCccccc
Q 006395 562 AKVAHFCSMCGPKFCSMKITEDVRKYAEEHGYGSAEEALQQGMDAMSAEFLAAKKTVSGEQHGEVGGEIYLPESYISS 639 (647)
Q Consensus 562 ~k~~~~CSMCGp~fCamki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~g~~~y~~~~~~~~ 639 (647)
+|+++|||||||+||||||+++++++++++++....++++.||++|+.+|..++||++|++|.+.|+++|++.++.++
T Consensus 562 ~k~a~~CSMCGp~fCamki~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~g~~~y~~~~~~~~ 639 (642)
T PLN02444 562 AKVAHFCSMCGPKFCSMKITEDVRKYAEEHGYGSAEEAVKQGMDAMSAEFLAAKKTISGEQHGESGGEIYLPESYVAS 639 (642)
T ss_pred cCCCCccCCCCcchhhhHHHHHHHHHHhhccccchHHHHHhhHHHhhccccccccchhHHHHHhcCCcccccccchhc
Confidence 999999999999999999999999999988775556678899999999999999999999999999999999987654
No 2
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=100.00 E-value=3.5e-247 Score=1943.09 Aligned_cols=522 Identities=74% Similarity=1.168 Sum_probs=508.6
Q ss_pred cccCCCCceEeeccccCCCCCccccccEEEeecCC-------CCccccccCCCCC-----CCCcCCCCCCCCchhhhhhh
Q 006395 87 EQCFPKSSKEYREITHEESGHILQVPFRRIHLSGD-------EPNFDTYDTSGPQ-----NISPRVGLPKLRKDWIDRRE 154 (647)
Q Consensus 87 ~~~~p~S~KiY~~~~~~g~~~~lrVP~ReI~Ls~~-------~p~~~vYDTSGPy-----~id~~~GLp~lR~~Wi~~R~ 154 (647)
+.+||+|+|+|++ |++++||||||+|+|+++ ++||+|||||||| .||+++|||++|++||.+|+
T Consensus 16 ~~~~p~s~k~y~~----g~~~~~~vp~r~i~l~~~~~~~~~~~~~~~~ydtsgpy~dp~~~id~~~gl~~~r~~wi~~r~ 91 (607)
T PRK09284 16 TGPFPGSRKIYVE----GSRPDIRVPMREIHLSDTPTGGGEPNPPVPVYDTSGPYTDPDAKIDLRKGLPKLREPWIEERG 91 (607)
T ss_pred CCCCCCCceecCC----CCCCCccccceEEEeCCCCCCCCCCCCCcceecCCCCCCCCCccchhhcCCchhhhhhcccCC
Confidence 6799999999998 457899999999999974 6899999999999 59999999999999999998
Q ss_pred hc-----------------------------------CCCcccHHHHHHcCCCCHHHHHHHHHcC---------------
Q 006395 155 KL-----------------------------------GAPRYTQMYYAKQGVITEEMLYCATREK--------------- 184 (647)
Q Consensus 155 ~~-----------------------------------~~~~~TQm~~Ar~GiIT~EMe~VA~~E~--------------- 184 (647)
|+ .+.++|||++||+|+|||||++||++||
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ra~~~~~~TQm~~Ar~GiIT~EMe~VA~~E~~~~~~~~~~~~~g~~ 171 (607)
T PRK09284 92 DTEELEGRSVKSSDYRLADAGLDHLRFGLLRRPRRAKAGKNVTQMHYARQGIITPEMEYVAIRENMGREEVLRRQHPGES 171 (607)
T ss_pred CceeecCccCChhhccccccccccccccCCCCCcccCCCCCcchHHHHhcCCCCHHHHHHHHHhCcccccchhhcccccc
Confidence 73 1457999999999999999999999999
Q ss_pred --------CCHHHHHHHHhcceEEEecCCCCCCCCceEeecCCceeEeeccccCCCCCChHHHHHHHHHHHHhCCCEeee
Q 006395 185 --------LDPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTVMD 256 (647)
Q Consensus 185 --------i~pE~vR~~VA~GraVIPaN~nh~~~~p~~IG~g~~tKVNANIGtS~~~~~ie~EveKl~~A~~~GADtvMD 256 (647)
++|||||++||+||+|||+|+|||+++||+||+||+||||||||||++++|+++||||++||++||||||||
T Consensus 172 ~ga~~~~~i~pE~vR~~VA~Gr~VIP~N~nh~~~~p~~IG~~~~tKVNANIGtS~~~s~ieeEveK~~~A~~~GADtvMD 251 (607)
T PRK09284 172 FGAAIPEEITPEFVRDEVAAGRAIIPANINHPESEPMIIGRNFLVKINANIGNSAVTSSIEEEVEKMVWATRWGADTVMD 251 (607)
T ss_pred ccccCCCccCHHHHHHHHhCceEEeecCCCCCCCCeeEECCCceeEEEeeecCCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCccc
Q 006395 257 LSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMT 336 (647)
Q Consensus 257 LSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~t 336 (647)
||||+|||+||+|||+||||||||||||||+++++|.+++||||+|||+|++|||||||||||||||++++++++.+|+|
T Consensus 252 LSTGgdi~~~R~~Il~~spvPvGTVPiYqA~~~~~~~~~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~R~t 331 (607)
T PRK09284 252 LSTGKNIHETREWILRNSPVPIGTVPIYQALEKVNGVAEDLTWEIFRDTLIEQAEQGVDYFTIHAGVLLRYVPLTAKRVT 331 (607)
T ss_pred cCCCCCHHHHHHHHHHcCCCCccCccHHHHHHHhcCChhhCCHHHHHHHHHHHHHhCCCEEEEChhhHHHHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999899999
Q ss_pred CccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCe
Q 006395 337 GIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQ 416 (647)
Q Consensus 337 gIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQ 416 (647)
||||||||||++||++|++|||||+|||+|||||++||||||||||||||||+||||+|||+||++|||||+|||++|||
T Consensus 332 gIVSRGGSima~Wml~h~kENplYe~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL~tLGELt~rA~e~gVQ 411 (607)
T PRK09284 332 GIVSRGGSIMAKWCLAHHKENFLYTHFEEICEIMAAYDVSFSLGDGLRPGSIADANDEAQFAELETLGELTKIAWEHDVQ 411 (607)
T ss_pred CcccCCHHHHHHHHHHcCCcCcHHHHHHHHHHHHHHhCeeeeccCCcCCCccccCCcHHHHHHHHHHHHHHHHHHHcCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCccccccCCCchhHHHhHHHHHhhhcccceeeecCchhhcCCCChhH
Q 006395 417 VMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALLCYVTPKEHLGLPNRDD 496 (647)
Q Consensus 417 VMIEGPGHVPl~~I~~nv~lqk~lc~~APfYvLGPLvTDIApGYDHItsAIGaA~aa~~Gad~LCYVTPaEHLgLP~~eD 496 (647)
||||||||||||+|++||++||++|++|||||||||||||||||||||||||||+|||+||||||||||||||||||+||
T Consensus 412 VMIEGPGHVPl~~I~~N~~lqk~lc~~APfYvLGPLvTDIApGYDHItsAIGaA~aa~~Gad~LCYVTPaEHLgLP~~eD 491 (607)
T PRK09284 412 VMIEGPGHVPMHLIKENMDKQLEHCHEAPFYTLGPLTTDIAPGYDHITSAIGAAMIGWFGTAMLCYVTPKEHLGLPNKDD 491 (607)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhhCCCCeeecCCcccccCCCchHHHHHHHHHHHHHcCCCeEEecChHHHcCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhhhhcCCcchhhHHHHHHHHHhhcChHHHHhhcCChHHHHhhhhccCCCCCCCCCCcccCCCCCcc
Q 006395 497 VKAGVIAYKIAAHAADLAKGHPLAQTWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETLPSEGAKVAHFCSMCGPKFC 576 (647)
Q Consensus 497 VreGViA~kIAAHaaDlaKg~p~A~~rD~~mS~AR~~~dWe~Qf~LalDPe~Ar~~~~~~~p~~~~k~~~~CSMCGp~fC 576 (647)
||+|||||||||||||||||+|+|++||++||+||++|||++||+||||||+||+||++++|++.+|+++|||||||+||
T Consensus 492 VreGVIA~KIAAHaaDlaKg~p~A~~rD~~mS~AR~~~dWe~Qf~LaLDPe~Ar~~~de~~p~~~~k~a~~CSMCGp~fC 571 (607)
T PRK09284 492 VKEGVITYKIAAHAADLAKGHPGAQIRDNALSKARFEFRWEDQFNLSLDPDTARAFHDETLPAESAKVAHFCSMCGPKFC 571 (607)
T ss_pred HHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHCCHHHHHHHhcCHHHHHHHHhhcCCccccCCCCccCCCChhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccCCcccCCcCCeeeecC
Q 006395 577 SMKITEDVRKYAEEHGYGSAEEALQQGMDAMSAEFLAAKKTVSGEQHGEVGGEIYLPE 634 (647)
Q Consensus 577 amki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~g~~~y~~~ 634 (647)
||||++++++++++ +.||++||+||++ .|++||++.
T Consensus 572 amki~~~~~~~~~~----------~~gm~~~~~~f~~------------~g~~~y~~~ 607 (607)
T PRK09284 572 SMKISQEVRDYAAE----------EAGMAEKSEEFRA------------SGGELYLPV 607 (607)
T ss_pred hhHHHHHHHHHhhh----------hccHHHHHHHHHh------------hCcccccCC
Confidence 99999999998764 3599999999998 799999863
No 3
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=100.00 E-value=1.1e-213 Score=1633.35 Aligned_cols=426 Identities=68% Similarity=1.066 Sum_probs=411.3
Q ss_pred cccHHHHHHcCCCCHHHHHHHHHcCCCHHHHHHHHhcceEEEecCCCCCCCCceEeecCCceeEeeccccCCCCCChHHH
Q 006395 160 RYTQMYYAKQGVITEEMLYCATREKLDPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEE 239 (647)
Q Consensus 160 ~~TQm~~Ar~GiIT~EMe~VA~~E~i~pE~vR~~VA~GraVIPaN~nh~~~~p~~IG~g~~tKVNANIGtS~~~~~ie~E 239 (647)
+||||++||+|+||+||++||++||+ |||||++||+||+|||+|+|||+++||+||+||+||||||||||++++|+++|
T Consensus 2 ~~Tqm~~Ar~GiiT~EM~~VA~~E~~-~e~vr~~vA~Gr~iIp~N~~h~~~~p~~IG~~~~tKVNaNiGtS~~~~~i~~E 80 (432)
T COG0422 2 NMTQMEYARKGIITPEMEFVAEREGP-PEFVRREVAEGRAIIPANINHPELEPMIIGRGLRTKVNANIGTSADTSDIDEE 80 (432)
T ss_pred cccHHHHHhcCCCCHHHHHHHHhcCC-HHHHHHHHhCCcEEeecCCCCCcccceeeccCceEEEeeeecCCcccCCHHHH
Confidence 68999999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 006395 240 VYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTI 319 (647)
Q Consensus 240 veKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGVDf~TI 319 (647)
|||++||++|||||||||||||||++||+|||++|||||||||||||++++++.+++||||+||++||+|||||||||||
T Consensus 81 veK~~~A~~~GADtvMDLStGgdl~eiR~~ii~~s~vPvGTVPIYqA~~~~~~~~~~~t~d~~~~~v~~qa~~GVdfmTI 160 (432)
T COG0422 81 VEKAVWAIKWGADTVMDLSTGGDLHEIREWIIRNSPVPVGTVPIYQALEEVNGKVEDLTEDDFFDTVEKQAEQGVDFMTI 160 (432)
T ss_pred HHHHHHHHHhCcceeEecccCCCHHHHHHHHHhcCCCCcCCchHHHHHHHHhcchhhCCHHHHHHHHHHHHHhCCcEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccccccc--CcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHH
Q 006395 320 HAGVLLRYIPLTA--KRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQF 397 (647)
Q Consensus 320 HaGv~~~~~~~~~--~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~ 397 (647)
||||++++++++. +|+|||||||||||++||++|++|||||+|||+||||||+||||||||||||||||+||||+|||
T Consensus 161 HaGV~~~~~~~~~~~~R~~giVSRGGsi~a~Wml~~~~ENply~~fd~lleI~k~yDvtlSLGDglRPG~i~DA~D~aQ~ 240 (432)
T COG0422 161 HAGVLLEYVPRTKRSGRVTGIVSRGGSIMAAWMLHNHKENPLYEHFDELLEIFKEYDVTLSLGDGLRPGCIADANDEAQF 240 (432)
T ss_pred ehhhhHHHHHHHHhcCceeeeeccchHHHHHHHHHcCCcCchhhhHHHHHHHHHHhCeeeeccCCCCCCcccCCccHHHH
Confidence 9999999999755 59999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCccccccCCCchhHHHhHHHHHhhhccc
Q 006395 398 AELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGT 477 (647)
Q Consensus 398 ~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~nv~lqk~lc~~APfYvLGPLvTDIApGYDHItsAIGaA~aa~~Ga 477 (647)
+||++|||||||||++|||||||||||||||+|++||++||++|++|||||||||||||||||||||||||||+|||+||
T Consensus 241 ~EL~tlgeL~krA~~~gVQvmvEGPGHvpl~~I~~nv~l~k~~c~~aPfYvLGPLvTDIApGYDHItsAIGaA~aa~~Ga 320 (432)
T COG0422 241 AELITLGELTKRAWEAGVQVMVEGPGHVPLNEIEANVKLQKELCDGAPFYVLGPLVTDIAPGYDHITSAIGAAMAAWAGA 320 (432)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEECCCcCcHHHHHHHHHHHHHhcCCCCeeeeCCcccccCCCchHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecCchhhcCCCChhHHHHHHHHHHHHHhHhhhhcCCcchhhHHHHHHHHHhhcChHHHHhhcCChHHHHhhhhccC
Q 006395 478 ALLCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPLAQTWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETL 557 (647)
Q Consensus 478 d~LCYVTPaEHLgLP~~eDVreGViA~kIAAHaaDlaKg~p~A~~rD~~mS~AR~~~dWe~Qf~LalDPe~Ar~~~~~~~ 557 (647)
||||||||+|||+|||+||||+|||||||||||||+|||+|+|++||++||+||++|||++||+||||||+||+||++++
T Consensus 321 d~LCYVTPaEHL~LP~~eDV~eGvIa~kIAAHaaD~aK~~~~a~~~D~~ms~aR~~~dWe~qf~lalDpe~Ar~~~~e~~ 400 (432)
T COG0422 321 DMLCYVTPAEHLGLPNVEDVKEGVIAYKIAAHAADLAKGHPGARDRDDAMSKARFEFDWEDQFELALDPERARAYHDETL 400 (432)
T ss_pred ceEEecCcHHHcCCCCHHHHHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHHhCCHHHHHHHhcChHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccCCCCCcchhhhhHHHHH
Q 006395 558 PSEGAKVAHFCSMCGPKFCSMKITEDVRK 586 (647)
Q Consensus 558 p~~~~k~~~~CSMCGp~fCamki~~~~~~ 586 (647)
|++..+.+++|+||||+||+|++.++.++
T Consensus 401 p~~~~~csmcg~~C~~k~~~~~~~~~~~~ 429 (432)
T COG0422 401 PEESDKCAMCGSMCAPKFCSMKISQDVRD 429 (432)
T ss_pred CCCcchhhhhhcccCHHHHHHHHhHhhhh
Confidence 99876555555555555555555554443
No 4
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=100.00 E-value=5.2e-207 Score=1594.96 Aligned_cols=420 Identities=60% Similarity=0.940 Sum_probs=414.2
Q ss_pred ccHHHHHHcCCCCHHHHHHHHHcCCCHHHHHHHHhcceEEEecCCCCCCCCceEeecCCceeEeeccccCCCCCChHHHH
Q 006395 161 YTQMYYAKQGVITEEMLYCATREKLDPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEV 240 (647)
Q Consensus 161 ~TQm~~Ar~GiIT~EMe~VA~~E~i~pE~vR~~VA~GraVIPaN~nh~~~~p~~IG~g~~tKVNANIGtS~~~~~ie~Ev 240 (647)
||||++||+|+||+||++||++||++||+||++||+|++|||+|+||++++||+||++|+||||||||||++.+|+++|+
T Consensus 1 ~Tq~~~Ar~G~iT~em~~vA~~E~v~~e~ir~~vA~G~iVIp~N~~~~~~~p~~IG~glrtKVNaNIGtS~~~~d~~~E~ 80 (423)
T TIGR00190 1 MTQMHYARKGVITPEMKFVAERENVDPEFLRREVASGRIVIPSNINREESEPMGIGRNLRTKVNANIGTSADTSDIEEEV 80 (423)
T ss_pred CChHHHHHcCCCCHHHHHHHHHcCCCHHHHHHHhhCceEEeecCCCCCCCCceEecCCceeEEEeeecCCCCCCCHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEEe
Q 006395 241 YKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIH 320 (647)
Q Consensus 241 eKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGVDf~TIH 320 (647)
+|+++|++|||||||||||||||+++|++||++|||||||||||||+.++.+.+.+||+|+||++||+||+|||||||||
T Consensus 81 ~K~~~A~~~GADtiMDLStGgdl~~iR~~il~~s~vpvGTVPiYqa~~~~~~~~~~mt~d~~~~~ie~qa~dGVDfmTiH 160 (423)
T TIGR00190 81 EKALIAIKYGADTVMDLSTGGDLDEIRKAILDAVPVPVGTVPIYQAAEKVHGAVEDMDEDDMFRAIEKQAKDGVDFMTIH 160 (423)
T ss_pred HHHHHHHHcCCCeEeeccCCCCHHHHHHHHHHcCCCCccCccHHHHHHHhcCChhhCCHHHHHHHHHHHHHhCCCEEEEc
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred ccccccccccc--cCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHH
Q 006395 321 AGVLLRYIPLT--AKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFA 398 (647)
Q Consensus 321 aGv~~~~~~~~--~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~ 398 (647)
||||++++++. ++|+|||||||||||++||++|++|||||+|||||||||++||||||||||||||||+||+|+||++
T Consensus 161 ~Gi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~~~~ENPlye~fD~lLeI~~~yDVtlSLGDglRPG~i~DA~D~aQi~ 240 (423)
T TIGR00190 161 AGVLLEYVERLKRSGRITGIVSRGGAILAAWMLHHHKENPLYKNFDYILEIAKEYDVTLSLGDGLRPGCIADATDRAQIS 240 (423)
T ss_pred cchhHHHHHHHHhCCCccCeecCcHHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCeeeeccCCcCCCccccCCcHHHHH
Confidence 99999999974 5799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCccccccCCCchhHHHhHHHHHhhhcccc
Q 006395 399 ELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTA 478 (647)
Q Consensus 399 EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~nv~lqk~lc~~APfYvLGPLvTDIApGYDHItsAIGaA~aa~~Gad 478 (647)
||++||||++|||++|||||||||||||||||++||++||++|++|||||||||||||||||||||||||||+|||+|||
T Consensus 241 El~~lgeL~~rA~e~gVQvMVEGPGHvPl~~I~~nv~lqK~lc~~APfYvLGPLvTDiApGYDHItsAIGgAiAa~~GAd 320 (423)
T TIGR00190 241 ELITLGELVERAREADVQCMVEGPGHVPLDQIEANVRLQKELCDEAPFYVLGPLVTDIAPGYDHITSAIGAAIAGWAGAD 320 (423)
T ss_pred HHHHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHHHhhCCCCeeecCCcccccCCCchHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCchhhcCCCChhHHHHHHHHHHHHHhHhhhhcCCcchhhHHHHHHHHHhhcChHHHHhhcCChHHHHhhhhccCC
Q 006395 479 LLCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPLAQTWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETLP 558 (647)
Q Consensus 479 ~LCYVTPaEHLgLP~~eDVreGViA~kIAAHaaDlaKg~p~A~~rD~~mS~AR~~~dWe~Qf~LalDPe~Ar~~~~~~~p 558 (647)
|||||||+|||+|||+|||||||||+||||||||||||+|+|++||++||+||++|||++||+||||||+||++|+++.|
T Consensus 321 fLCYVTPaEHL~LP~~eDVreGviA~kIAAHaaDiakg~~~A~e~D~~Ms~AR~~ldWe~q~~lalDPe~ar~~r~~~~~ 400 (423)
T TIGR00190 321 FLCYVTPKEHLALPNVEDVKEGVIAYKIAAHAADLAKGHPGARERDLEMSKARKNFDWERQFELALDPEKAREYRDETPP 400 (423)
T ss_pred eEEecCcHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHCCHHHHHHHcCCHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCcccCCCCCcchhhhhHHHH
Q 006395 559 SEGAKVAHFCSMCGPKFCSMKITEDVR 585 (647)
Q Consensus 559 ~~~~k~~~~CSMCGp~fCamki~~~~~ 585 (647)
.+. ++||||| +|||||++++++
T Consensus 401 ~~~----~~CsMCG-~~Ca~k~~~~~~ 422 (423)
T TIGR00190 401 EDE----DFCSMCG-KYCAMKIVQEAR 422 (423)
T ss_pred CCC----CccCcch-HHHHHHHHHHhc
Confidence 763 7999999 999999999865
No 5
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=100.00 E-value=1.7e-205 Score=1588.03 Aligned_cols=421 Identities=54% Similarity=0.860 Sum_probs=412.9
Q ss_pred ccHHHHHHcCCCCHHHHHHHHHcCCCHHHHHHHHhcceEEEecCCCCCCCCceEeecCCceeEeeccccCCCCCChHHHH
Q 006395 161 YTQMYYAKQGVITEEMLYCATREKLDPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEV 240 (647)
Q Consensus 161 ~TQm~~Ar~GiIT~EMe~VA~~E~i~pE~vR~~VA~GraVIPaN~nh~~~~p~~IG~g~~tKVNANIGtS~~~~~ie~Ev 240 (647)
||||+.||+|+||+||++||++||++||+||++||+|++|||+|+||+.++|++||+||+||||||||||++++|+++|+
T Consensus 1 ~Tq~~~Ar~G~iT~em~~vA~~E~v~~e~ir~~vA~G~iVIp~N~~h~~~~p~~IG~gl~tKVNaNIGtS~~~~d~~~E~ 80 (431)
T PRK13352 1 MTQMEAARKGIITEEMEYVAKKEGVDPEFIREGVAEGRIVIPANINHKNLKPVGIGKGLRTKVNANIGTSSDISDIEEEL 80 (431)
T ss_pred CChHHHHHcCCCCHHHHHHHHHcCCCHHHHHHHHhCceEEEecCCCCCCCCeeEEcCCceeEEeeeecCCCCCCCHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHh---cCccCCCCHHHHHHHHHHHHhcCCCEE
Q 006395 241 YKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKV---DGIAENLSWEVFRDTLIEQAEQGVDYF 317 (647)
Q Consensus 241 eKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~---~g~~~dlt~e~~~d~i~eQaeqGVDf~ 317 (647)
+|+++|++|||||||||||||||++||++||++|||||||||||||+.++ +|++.+||+|+||++||+||+||||||
T Consensus 81 ~K~~~A~~~GADtiMDLStggdl~~iR~~il~~s~vpvGTVPiYqa~~~~~~k~~~~~~mt~d~~~~~ie~qa~~GVDfm 160 (431)
T PRK13352 81 EKAKVAVKYGADTIMDLSTGGDLDEIRRAIIEASPVPVGTVPIYQAAVEAARKYGSVVDMTEDDLFDVIEKQAKDGVDFM 160 (431)
T ss_pred HHHHHHHHcCCCeEeeccCCCCHHHHHHHHHHcCCCCCcChhHHHHHHHHHhcCCChhhCCHHHHHHHHHHHHHhCCCEE
Confidence 99999999999999999999999999999999999999999999999887 689999999999999999999999999
Q ss_pred EEecccccccccc--ccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHH
Q 006395 318 TIHAGVLLRYIPL--TAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTA 395 (647)
Q Consensus 318 TIHaGv~~~~~~~--~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~A 395 (647)
|||||||++++++ .++|+|||||||||||++||++|++|||||+|||||||||++|||||||||||||||++||+|+|
T Consensus 161 TiHcGi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~n~~ENPlye~fD~lLeI~~~yDVtlSLGDglRPG~i~Da~D~a 240 (431)
T PRK13352 161 TIHCGVTRETLERLKKSGRIMGIVSRGGSFLAAWMLHNNKENPLYEHFDYLLEILKEYDVTLSLGDGLRPGCIADATDRA 240 (431)
T ss_pred EEccchhHHHHHHHHhcCCccCeecCCHHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCeeeeccCCcCCCccccCCcHH
Confidence 9999999999996 34899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCccccccCCCchhHHHhHHHHHhhhc
Q 006395 396 QFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGAL 475 (647)
Q Consensus 396 Q~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~nv~lqk~lc~~APfYvLGPLvTDIApGYDHItsAIGaA~aa~~ 475 (647)
|++||++||||++|||++|||||||||||||||||++||++||++|++|||||||||||||||||||||||||||+|||+
T Consensus 241 Qi~El~~lgeL~~RA~e~gVQvMVEGPGHvPl~~I~~nv~l~K~lc~~APfYvLGPLvTDiApGYDHIt~AIGgAiAa~~ 320 (431)
T PRK13352 241 QIQELITLGELVKRAREAGVQVMVEGPGHVPLDQIEANVKLQKRLCHGAPFYVLGPLVTDIAPGYDHITSAIGGAIAAAA 320 (431)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHHhhCCCCceecCccccccCCCchHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeecCchhhcCCCChhHHHHHHHHHHHHHhHhhhhcCCcchhhHHHHHHHHHhhcChHHHHhhcCChHHHHhhhhc
Q 006395 476 GTALLCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPLAQTWDDALSKARFEFRWMDQFALSLDPMTAMSFHDE 555 (647)
Q Consensus 476 Gad~LCYVTPaEHLgLP~~eDVreGViA~kIAAHaaDlaKg~p~A~~rD~~mS~AR~~~dWe~Qf~LalDPe~Ar~~~~~ 555 (647)
||||||||||+|||+|||+|||||||||+||||||||||||+|+|++||++||+||++|||++||+||||||+||++|++
T Consensus 321 GAdfLCYVTPaEHL~LP~~eDVreGviA~kIAAHaaDiakg~~~a~~~D~~ms~AR~~ldW~~q~~laiDpe~ar~~~~~ 400 (431)
T PRK13352 321 GADFLCYVTPAEHLGLPNVEDVREGVIASKIAAHAADIAKGRPGARERDDEMSKARKNLDWEKQFELALDPEKAREYRDE 400 (431)
T ss_pred CCCeEEecChHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHCCHHHHHHHcCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCcccCCCCCcchhhhhHHHHHH
Q 006395 556 TLPSEGAKVAHFCSMCGPKFCSMKITEDVRKY 587 (647)
Q Consensus 556 ~~p~~~~k~~~~CSMCGp~fCamki~~~~~~~ 587 (647)
+. ++.++||||| +|||||+++++.+.
T Consensus 401 ~~-----~~~~~CsMCG-~~CA~ki~~~~~~~ 426 (431)
T PRK13352 401 RL-----KDEEACSMCG-KFCAMKIVNEALEG 426 (431)
T ss_pred cC-----CCCCeeCcCH-HHHHHHHHHHHhcc
Confidence 86 2357999999 89999999988654
No 6
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=100.00 E-value=5.9e-205 Score=1580.19 Aligned_cols=418 Identities=55% Similarity=0.878 Sum_probs=317.9
Q ss_pred cHHHHHHcCCCCHHHHHHHHHcCCCHHHHHHHHhcceEEEecCCCCCCCCceEeecCCceeEeeccccCCCCCChHHHHH
Q 006395 162 TQMYYAKQGVITEEMLYCATREKLDPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVY 241 (647)
Q Consensus 162 TQm~~Ar~GiIT~EMe~VA~~E~i~pE~vR~~VA~GraVIPaN~nh~~~~p~~IG~g~~tKVNANIGtS~~~~~ie~Eve 241 (647)
|||++||+|+||+||++||++||++||+||++||+|++|||+|+||++.+|++||++|+||||||||||++.+|+++|++
T Consensus 1 Tq~~~Ar~G~iT~em~~vA~~E~i~pE~ir~~vA~G~iVIp~N~~h~~~~p~~IG~gl~tKVNaNIGtS~~~~d~~~E~~ 80 (420)
T PF01964_consen 1 TQMEYARKGIITPEMEYVAEREGISPEFIRRGVAAGRIVIPANINHKELKPVGIGKGLRTKVNANIGTSSDYSDIEEELE 80 (420)
T ss_dssp SHHHHHHTT---HHHHHHHHHHCTTHHHHHHHHHTTSEE----TT-TT-----EETTS--EEEEEE--------HHHHHH
T ss_pred ChHHHHhcCCCCHHHHHHHHHcCCCHHHHHHHHhCceEEEecCCCCCCCCceEecCCCceEEEeeecCCCCCCCHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEEec
Q 006395 242 KVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHA 321 (647)
Q Consensus 242 Kl~~A~~~GADtvMDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGVDf~TIHa 321 (647)
|+++|++|||||||||||||||+++|++||++|||||||||||||+.+.+|++.+||||+||++||+||+||||||||||
T Consensus 81 K~~~A~~~GADtvMDLStggdl~~iR~~il~~~~vpvGTVPiYqa~~~~~~~~~~~t~d~~~~~ie~qa~~GVDfmtiH~ 160 (420)
T PF01964_consen 81 KLKIAEKAGADTVMDLSTGGDLDEIRRAILENSPVPVGTVPIYQAAIRKGGSIVDMTEDDFFDVIEKQAKDGVDFMTIHC 160 (420)
T ss_dssp HHHHHHHTT-SEEEE---STTHHHHHHHHHHT-SS-EEE-HHHHHHHHTTT-GGG--HHHHHHHHHHHHHHT--EEEE-T
T ss_pred HHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHhCCCccccchHHHHHHHhCCChhhCCHHHHHHHHHHHHHcCCCEEEEcc
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred ccccccccccc--CcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHH
Q 006395 322 GVLLRYIPLTA--KRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAE 399 (647)
Q Consensus 322 Gv~~~~~~~~~--~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~E 399 (647)
|||++++++.. +|++||||||||||++||++|++|||||+||||||||||+|||||||||||||||++||+|+||++|
T Consensus 161 git~~~~~~~~~~~R~~giVSRGGs~l~~WM~~n~~ENPly~~fD~lLeI~k~yDVtLSLGDglRPG~i~Da~D~aQi~E 240 (420)
T PF01964_consen 161 GITRETLERLKKSGRIMGIVSRGGSILAAWMLHNGKENPLYEHFDRLLEIAKEYDVTLSLGDGLRPGCIADATDRAQIQE 240 (420)
T ss_dssp T--GGGGGGGT--TSSS----HHHHHHHHHHHHHTS--HHHHTHHHHHHHHTTTT-EEEE--TT--SSGGGTT-HHHHHH
T ss_pred chhHHHHHHHhhhccccCccccchHHHHHHHHhcCCcCcHHHhHHHHHHHHHHhCeeEecccccCCCCcCCCCcHHHHHH
Confidence 99999999755 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCccccccCCCchhHHHhHHHHHhhhcccce
Q 006395 400 LLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTAL 479 (647)
Q Consensus 400 L~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~nv~lqk~lc~~APfYvLGPLvTDIApGYDHItsAIGaA~aa~~Gad~ 479 (647)
|++||||++||||+|||||||||||||||||++||++||++|++|||||||||||||||||||||||||||+|||+||||
T Consensus 241 L~~lgeL~~rA~e~gVQvMVEGPGHVPl~~I~~nv~lqK~lc~~APfYvLGPLvTDiapGYDHIt~AIGgAiaa~~GAdf 320 (420)
T PF01964_consen 241 LIILGELVKRAREAGVQVMVEGPGHVPLNQIEANVKLQKRLCHGAPFYVLGPLVTDIAPGYDHITSAIGGAIAAAAGADF 320 (420)
T ss_dssp HHHHHHHHHHHHHTT--EEEEE-SB--GGGHHHHHHHHHHHTTT--EEEE--BS-SS-TT-HHHHHHHHHHHHHHHT-SE
T ss_pred HHHHHHHHHHHHHCCCeEEeeCCCCCCHHHHHHHHHHHHHhcCCCCcccCCccccccCCChhHHHHHHHHHHHHHcCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCchhhcCCCChhHHHHHHHHHHHHHhHhhhhcCCcchhhHHHHHHHHHhhcChHHHHhhcCChHHHHhhhhccCCC
Q 006395 480 LCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPLAQTWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETLPS 559 (647)
Q Consensus 480 LCYVTPaEHLgLP~~eDVreGViA~kIAAHaaDlaKg~p~A~~rD~~mS~AR~~~dWe~Qf~LalDPe~Ar~~~~~~~p~ 559 (647)
||||||+|||+|||+|||||||||+||||||||||||+|+|++||++||+||++|||++||+||||||+|+++|+++.|.
T Consensus 321 LCYVTPaEHL~LP~~eDV~eGviA~kIAAHaaDiaKg~~~A~~~D~~ms~AR~~ldWe~q~~laiDpe~a~~~~~~~~~~ 400 (420)
T PF01964_consen 321 LCYVTPAEHLGLPTPEDVREGVIASKIAAHAADIAKGIPGARERDRAMSKARKELDWEKQFELAIDPEKARRIREERPPE 400 (420)
T ss_dssp EE---TTTTTS---HHHHHHHHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHHTT-HHHHHHTSSSHHHHHHH-------
T ss_pred EeeccHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhCCHHHHHHHcCCHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCCCcccCCCCCcchhhhhHHH
Q 006395 560 EGAKVAHFCSMCGPKFCSMKITEDV 584 (647)
Q Consensus 560 ~~~k~~~~CSMCGp~fCamki~~~~ 584 (647)
+ .++||||| +|||||+++++
T Consensus 401 ~----~~~CsMCG-~~Ca~ki~~~~ 420 (420)
T PF01964_consen 401 D----EDFCSMCG-KFCAMKIVREY 420 (420)
T ss_dssp -------------------------
T ss_pred C----CCeeCCCh-hhHHHHHhhhC
Confidence 5 48999999 99999999864
No 7
>PF13667 ThiC-associated: ThiC-associated domain ; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=99.89 E-value=2.1e-24 Score=184.84 Aligned_cols=65 Identities=48% Similarity=0.795 Sum_probs=41.5
Q ss_pred ccCCCCceEeeccccCCCCCccccccEEEeecCC--------CCccccccCCCCC-----CCCcCCCCCCCCchhhhhhh
Q 006395 88 QCFPKSSKEYREITHEESGHILQVPFRRIHLSGD--------EPNFDTYDTSGPQ-----NISPRVGLPKLRKDWIDRRE 154 (647)
Q Consensus 88 ~~~p~S~KiY~~~~~~g~~~~lrVP~ReI~Ls~~--------~p~~~vYDTSGPy-----~id~~~GLp~lR~~Wi~~R~ 154 (647)
++||+|+|+|++ |+.++||||||+|+|+++ |++|+|||||||| .||+++|||++|++||.+|+
T Consensus 1 ~~~P~S~KiY~~----g~~~~irVPmR~I~Ls~t~~~~~~~~n~p~~vYDTSGPYtDp~~~iDi~~GLp~lR~~WI~~R~ 76 (80)
T PF13667_consen 1 QPFPASEKIYVQ----GSRPDIRVPMREIHLSDTPIGNGGSPNPPVPVYDTSGPYTDPDVEIDIRKGLPPLREEWIEERG 76 (80)
T ss_dssp -S-TT-EEEEEE-----SSTT-EEEEEEE---GG------G----EEEE---GGGG-TTS---TTT-S--TTHHHHHHTS
T ss_pred CCCCCCeeEEeC----CCCCCceeecEEEEeCCCccccccCCCCCcCcccCCCCCCCCCcccchhcCChHHHHHHHHhcC
Confidence 479999999998 457899999999999986 7899999999999 59999999999999999999
Q ss_pred hc
Q 006395 155 KL 156 (647)
Q Consensus 155 ~~ 156 (647)
|+
T Consensus 77 D~ 78 (80)
T PF13667_consen 77 DT 78 (80)
T ss_dssp -E
T ss_pred Cc
Confidence 85
No 8
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=93.54 E-value=0.89 Score=47.96 Aligned_cols=75 Identities=24% Similarity=0.386 Sum_probs=47.5
Q ss_pred EeeccccCCCCCChHHHHHHHHHHHHhCCCEe-eecCCCCC--hHHHHHHHHhcCC-Ccc--ccchhhhHHHHhcCccCC
Q 006395 223 VNANIGNSAVASSIEEEVYKVQWATMWGADTV-MDLSTGRH--IHETREWILRNSA-VPV--GTVPIYQALEKVDGIAEN 296 (647)
Q Consensus 223 VNANIGtS~~~~~ie~EveKl~~A~~~GADtv-MDLSTGgd--i~~~R~~Il~~sp-vPv--GTVPIYqA~~k~~g~~~d 296 (647)
||+++|.. ++..+.++..+++|+|.| +|.+.|.. ..++=++|-+..| +|| |+|.-.+.+.++
T Consensus 85 v~~~~~~~------~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l------ 152 (325)
T cd00381 85 VGAAVGTR------EDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDL------ 152 (325)
T ss_pred EEEecCCC------hhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHH------
Confidence 57777764 445778888999999986 57776644 1222333333443 554 566555544433
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEecc
Q 006395 297 LSWEVFRDTLIEQAEQGVDYFTIHAG 322 (647)
Q Consensus 297 lt~e~~~d~i~eQaeqGVDf~TIHaG 322 (647)
.+.|+||+.+|-|
T Consensus 153 -------------~~aGaD~I~vg~g 165 (325)
T cd00381 153 -------------IDAGADGVKVGIG 165 (325)
T ss_pred -------------HhcCCCEEEECCC
Confidence 5689999999743
No 9
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=92.65 E-value=4.3 Score=37.40 Aligned_cols=167 Identities=13% Similarity=0.055 Sum_probs=98.9
Q ss_pred ChHHHHHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccc-cchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcC
Q 006395 235 SIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVG-TVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQG 313 (647)
Q Consensus 235 ~ie~EveKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~~spvPvG-TVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqG 313 (647)
|.+.=.+=++++++.|+|.|.=+ |.-+..+++.+- | .+|++= .++..-...+.++..+.+++-.+.|
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~--g~~i~~~~~~~~-------~~~~~v~~---~v~~~~~~~~~~~~~~~a~~a~~~G 78 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVN--PGYVRLAADALA-------GSDVPVIV---VVGFPTGLTTTEVKVAEVEEAIDLG 78 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEC--HHHHHHHHHHhC-------CCCCeEEE---EecCCCCCCcHHHHHHHHHHHHHcC
Confidence 55555556788899999997643 434444444321 2 344431 1222222244788888888889999
Q ss_pred CCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCc
Q 006395 314 VDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDAND 393 (647)
Q Consensus 314 VDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D 393 (647)
+|++.+++-.- +.+ . ..+.-+++||.++++-+ ++++.+.+-+ +|+.. .+
T Consensus 79 ad~i~v~~~~~--~~~--~---------------------~~~~~~~~~~~~i~~~~-~~~~pv~iy~--~p~~~---~~ 127 (201)
T cd00945 79 ADEIDVVINIG--SLK--E---------------------GDWEEVLEEIAAVVEAA-DGGLPLKVIL--ETRGL---KT 127 (201)
T ss_pred CCEEEEeccHH--HHh--C---------------------CCHHHHHHHHHHHHHHh-cCCceEEEEE--ECCCC---CC
Confidence 99999986431 111 0 03456788888888877 6788777765 46554 12
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcC-CCCccccC
Q 006395 394 TAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCN-EAPFYTLG 450 (647)
Q Consensus 394 ~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~nv~lqk~lc~-~APfYvLG 450 (647)
...+.++++.+.+.|+..+=..+|..+=+-=-..++.-++.+. +.||.++|
T Consensus 128 ------~~~~~~~~~~~~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~g 179 (201)
T cd00945 128 ------ADEIAKAARIAAEAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAG 179 (201)
T ss_pred ------HHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEEC
Confidence 2234566677778899988887774321111123344444443 45676666
No 10
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=91.04 E-value=5.6 Score=40.50 Aligned_cols=175 Identities=21% Similarity=0.133 Sum_probs=92.4
Q ss_pred HHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCC-Cc----cc-------cchhhhHHH--H-h-cCccCCCCHHHHHH
Q 006395 241 YKVQWATMWGADTVMDLSTGRHIHETREWILRNSA-VP----VG-------TVPIYQALE--K-V-DGIAENLSWEVFRD 304 (647)
Q Consensus 241 eKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~~sp-vP----vG-------TVPIYqA~~--k-~-~g~~~dlt~e~~~d 304 (647)
.-++.+++.|.-||+|........ .|+.+.+... -| -| ..+-|.... + . .....--+.+++++
T Consensus 46 ~~~~~~l~~GvTtv~d~g~~~~~~-~~~~~~~g~~~gPr~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (342)
T cd01299 46 RQARAALRAGFTTVRDAGGADYGL-LRDAIDAGLIPGPRVFASGRALSQTGGHGDPRGLSGLFPAGGLAAVVDGVEEVRA 124 (342)
T ss_pred HHHHHHHhCCCcEEEeCCCcchHH-HHHHHHcCCccCCceeecchhhcccCCCCccccccccccccCCcceecCHHHHHH
Confidence 468889999999999998665555 7877766542 11 01 111110000 0 0 00111225788999
Q ss_pred HHHHHHhcCCCEEEEec-c-------------cccccccc----ccCcccCcccc-ccHHHHHHHHHcCCcCchhhhH--
Q 006395 305 TLIEQAEQGVDYFTIHA-G-------------VLLRYIPL----TAKRMTGIVSR-GGSIHAKWCLAYHKENFAYEHW-- 363 (647)
Q Consensus 305 ~i~eQaeqGVDf~TIHa-G-------------v~~~~~~~----~~~R~tgIVSR-GGSi~a~Wml~~~~ENplY~~F-- 363 (647)
.+++++++|+|++-+.. | ++.+.+.. ...+=..+..- .|.-...+++..+.. ..+|.
T Consensus 125 ~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~i~~~l~~G~~--~i~H~~~ 202 (342)
T cd01299 125 AVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAHAYGAEAIRRAIRAGVD--TIEHGFL 202 (342)
T ss_pred HHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCC--EEeecCC
Confidence 99999999999998775 2 22233321 11111111111 122223334433322 12332
Q ss_pred --HHHHHHHhHhceeEec---------cCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEe
Q 006395 364 --DEILDICNQYDVALSI---------GDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMN 419 (647)
Q Consensus 364 --D~ileI~k~YDVtlSL---------GDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMI 419 (647)
|+.++.+++.++.++. ++..+.|-..+..+.. -.++...-..+++++++||.|.+
T Consensus 203 ~~~~~~~~l~~~g~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~Gv~v~~ 268 (342)
T cd01299 203 IDDETIELMKEKGIFLVPTLATYEALAAEGAAPGLPADSAEKV-ALVLEAGRDALRRAHKAGVKIAF 268 (342)
T ss_pred CCHHHHHHHHHCCcEEeCcHHHHHHHHhhccccCCCHHHHHHH-HHHHHHHHHHHHHHHHcCCeEEE
Confidence 6788999999998763 2222332211111111 11244455778899999999887
No 11
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=88.32 E-value=8.7 Score=37.02 Aligned_cols=133 Identities=14% Similarity=0.137 Sum_probs=79.0
Q ss_pred CChHHHHHHHHHHHHhCCCEeeecCCCC-ChHHHHHHHHh--cCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHH--
Q 006395 234 SSIEEEVYKVQWATMWGADTVMDLSTGR-HIHETREWILR--NSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIE-- 308 (647)
Q Consensus 234 ~~ie~EveKl~~A~~~GADtvMDLSTGg-di~~~R~~Il~--~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~e-- 308 (647)
+.++..++. -.++|-..|+.|+.-. +...+.+.=++ +.|++-+.+|-++.++. |++.+.+
T Consensus 27 ~~~~~~l~~---L~~~gI~~Iv~l~~~~~~~~~~~~~gi~~~~~p~~D~~~P~~~~i~~------------~~~~i~~~~ 91 (166)
T PTZ00242 27 SNLPLYIKE---LQRYNVTHLVRVCGPTYDAELLEKNGIEVHDWPFDDGAPPPKAVIDN------------WLRLLDQEF 91 (166)
T ss_pred ccHHHHHHH---HHhCCCeEEEecCCCCCCHHHHHHCCCEEEecCCCCCCCCCHHHHHH------------HHHHHHHHH
Confidence 345555443 4578999999997643 22222211112 23555566776654433 3333332
Q ss_pred --HHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCC
Q 006395 309 --QAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPG 386 (647)
Q Consensus 309 --QaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG 386 (647)
+.++| .-+.|||- +| +||.|.|++.|++.+..- ..++.++..++. |||
T Consensus 92 ~~~~~~g-~~V~VHC~---------aG-----igRSgt~~a~yL~~~~~~-----s~~eAi~~vr~~----------R~~ 141 (166)
T PTZ00242 92 AKQSTPP-ETIAVHCV---------AG-----LGRAPILVALALVEYGGM-----EPLDAVGFVREK----------RKG 141 (166)
T ss_pred HhhccCC-CeEEEECC---------CC-----CCHHHHHHHHHHHHhCCC-----CHHHHHHHHHHH----------CCC
Confidence 22223 34789992 22 589999999999987632 467777777765 999
Q ss_pred CccCCCcHHHHHHHHHHHHHHHHHHhcCCeEE
Q 006395 387 SIYDANDTAQFAELLTQGELTRRAWDKDVQVM 418 (647)
Q Consensus 387 ~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVM 418 (647)
++ + ..|..=|. +..++-++.|+.+|
T Consensus 142 ~i---~-~~Q~~~l~---~~~~~~~~~~~~~~ 166 (166)
T PTZ00242 142 AI---N-QTQLQFLK---KYKPRKKAAGCTIM 166 (166)
T ss_pred Cc---h-HHHHHHHH---HHHHHhccCCCccC
Confidence 98 3 45766554 44456666666554
No 12
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=88.20 E-value=6.9 Score=42.06 Aligned_cols=152 Identities=16% Similarity=0.129 Sum_probs=91.6
Q ss_pred CCCCHHHHHHHHHcCC-------CHHHHHHHHhcceEEEecCCCCCCCCceEeecCCceeEeeccccCCCCCChHHHHHH
Q 006395 170 GVITEEMLYCATREKL-------DPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYK 242 (647)
Q Consensus 170 GiIT~EMe~VA~~E~i-------~pE~vR~~VA~GraVIPaN~nh~~~~p~~IG~g~~tKVNANIGtS~~~~~ie~EveK 242 (647)
..|+.+|..+|.+.|. ++|..-+.| +.. + +. ++ =+|+++|++. ++.|+
T Consensus 44 t~in~~LA~~a~~~G~~~i~hK~~~E~~~sfv-------rk~-k-~~--------~L--~v~~SvG~t~------e~~~r 98 (321)
T TIGR01306 44 TIIDEKLAEQLAENGYFYIMHRFDEESRIPFI-------KDM-Q-ER--------GL--FASISVGVKA------CEYEF 98 (321)
T ss_pred hhhhHHHHHHHHHcCCEEEEecCCHHHHHHHH-------Hhc-c-cc--------cc--EEEEEcCCCH------HHHHH
Confidence 3789999999999984 888766653 222 1 11 12 4788998875 66788
Q ss_pred HHHHHHhC--CCEee-ecCCCCChHH--HHHHHHhcCCCc---cccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCC
Q 006395 243 VQWATMWG--ADTVM-DLSTGRHIHE--TREWILRNSAVP---VGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGV 314 (647)
Q Consensus 243 l~~A~~~G--ADtvM-DLSTGgdi~~--~R~~Il~~spvP---vGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGV 314 (647)
+..-++.| +|.|- |.+-|-...- +=+||-+..|+| .|.|= |.+...+. .+.|+
T Consensus 99 ~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~---------------t~e~a~~l----~~aGa 159 (321)
T TIGR01306 99 VTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVG---------------TPEAVREL----ENAGA 159 (321)
T ss_pred HHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCC---------------CHHHHHHH----HHcCc
Confidence 88888888 79765 8888854433 346676666765 34321 33333333 35799
Q ss_pred CEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCC
Q 006395 315 DYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPG 386 (647)
Q Consensus 315 Df~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG 386 (647)
|.+.++-|--+...-+ -++|+-. ..|.+ .-|.|+.+..++.+=.-=|+|-|
T Consensus 160 d~I~V~~G~G~~~~tr---~~~g~g~------~~~~l------------~ai~ev~~a~~~pVIadGGIr~~ 210 (321)
T TIGR01306 160 DATKVGIGPGKVCITK---IKTGFGT------GGWQL------------AALRWCAKAARKPIIADGGIRTH 210 (321)
T ss_pred CEEEECCCCCccccce---eeeccCC------CchHH------------HHHHHHHHhcCCeEEEECCcCcH
Confidence 9998884422211000 0244411 25653 67888888887764333345544
No 13
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=88.14 E-value=2.5 Score=41.59 Aligned_cols=81 Identities=9% Similarity=0.012 Sum_probs=56.8
Q ss_pred hhhHHHHHHHHhHhcee-EeccCCCCCCCccCCCcHHHHHHH--HHHHHHHHHHHhcCCeEEee--CCCCCC---CCchH
Q 006395 360 YEHWDEILDICNQYDVA-LSIGDGLRPGSIYDANDTAQFAEL--LTQGELTRRAWDKDVQVMNE--GPGHIP---MHKIP 431 (647)
Q Consensus 360 Y~~FD~ileI~k~YDVt-lSLGDGLRPG~i~DA~D~AQ~~EL--~~LGEL~krA~e~gVQVMIE--GPGHVP---l~~I~ 431 (647)
-++|++.+++|++.++. +.+.-|-.|+. .+..+.-+. ..|.+|++.|.+.||.+.+| .|-+.| ++...
T Consensus 83 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~----~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~~~~l~t~~ 158 (254)
T TIGR03234 83 REGVALAIAYARALGCPQVNCLAGKRPAG----VSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMPGFFLTTTE 158 (254)
T ss_pred HHHHHHHHHHHHHhCCCEEEECcCCCCCC----CCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCCCChhcCHH
Confidence 47888999999999984 45665544433 333333333 57899999999999999999 443433 66777
Q ss_pred HHHHHHHHhcCCC
Q 006395 432 ENMQKQLEWCNEA 444 (647)
Q Consensus 432 ~nv~lqk~lc~~A 444 (647)
+-+++.+++.+..
T Consensus 159 ~~~~li~~v~~~~ 171 (254)
T TIGR03234 159 QALAVIDDVGREN 171 (254)
T ss_pred HHHHHHHHhCCCC
Confidence 7778887766533
No 14
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=87.89 E-value=12 Score=42.03 Aligned_cols=171 Identities=13% Similarity=0.118 Sum_probs=97.4
Q ss_pred CCCHHHHHHHHHHH-----HhcC----CCEEEEecccc-ccccc----cc---cCcccCccccccHHHHHHHHHcCCcCc
Q 006395 296 NLSWEVFRDTLIEQ-----AEQG----VDYFTIHAGVL-LRYIP----LT---AKRMTGIVSRGGSIHAKWCLAYHKENF 358 (647)
Q Consensus 296 dlt~e~~~d~i~eQ-----aeqG----VDf~TIHaGv~-~~~~~----~~---~~R~tgIVSRGGSi~a~Wml~~~~ENp 358 (647)
.|+.+.+...++.- .+.| +|++.|++.-. .+.+. .. .+.-.-|-|.=-..+.+=..+-...+|
T Consensus 101 ~l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~dp~~v~~~Vk~V~~~~dvPLSIDT~dpevleaAleagad~~p 180 (450)
T PRK04165 101 TMDDEEIDARLKKINNFQFERVGEILKLDMVALRNASGDPEKFAKAVKKVAETTDLPLILCSEDPAVLKAALEVVADRKP 180 (450)
T ss_pred CCChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCCCHHHHHHHHHHHHHhcCCCEEEeCCCHHHHHHHHHhcCCCCc
Confidence 34555555554444 4566 88888888432 22122 11 123333444333444433333323333
Q ss_pred h-----hhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHH
Q 006395 359 A-----YEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPEN 433 (647)
Q Consensus 359 l-----Y~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~n 433 (647)
+ +++|+++++++++|++.+-+ .+ .| |..|-+|++++.++|+.=+|=-||.--+-+=-+|
T Consensus 181 lI~Sat~dN~~~m~~la~~yg~pvVv--------~~--~d------l~~L~~lv~~~~~~GI~dIILDPg~ggf~ksl~~ 244 (450)
T PRK04165 181 LLYAATKENYEEMAELAKEYNCPLVV--------KA--PN------LEELKELVEKLQAAGIKDLVLDPGTENIKETLDD 244 (450)
T ss_pred eEEecCcchHHHHHHHHHHcCCcEEE--------Ec--hh------HHHHHHHHHHHHHcCCCcEEECCCCchhhhhHHH
Confidence 2 47899999999999998877 11 12 6788899999999999888888888544444466
Q ss_pred HHHHHHhcCCCCccccC-ccccccCCCc--hhHHHhHHHHHhhhcccceeee
Q 006395 434 MQKQLEWCNEAPFYTLG-PLTTDIAPGY--DHITSAIGAANIGALGTALLCY 482 (647)
Q Consensus 434 v~lqk~lc~~APfYvLG-PLvTDIApGY--DHItsAIGaA~aa~~Gad~LCY 482 (647)
+.+-+++.=..=|=.|| |+.+...--+ |..--|+-|++--..|+|.++.
T Consensus 245 ~~~iRr~Al~~~~~~lgyPil~~~s~k~~~~~~~E~~~As~~~~kya~i~Vl 296 (450)
T PRK04165 245 FVQIRRAAIKKGDRPLGYPIIAFPIEAWMSDPMKEAAIASTLIAKYADILVL 296 (450)
T ss_pred HHHHHhhhhhcccccCCCCEEEcchhhcccchHHHHHHHHHHHHhCCcEEEE
Confidence 66555552222344566 7666543211 4444444444444455555543
No 15
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=87.55 E-value=0.28 Score=53.96 Aligned_cols=172 Identities=20% Similarity=0.189 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHhcCCeEEeeC---CCCCC-------CCchHHHHHHHHH-hcCCCCccccCccccccCCCchhHHHhHHH
Q 006395 401 LTQGELTRRAWDKDVQVMNEG---PGHIP-------MHKIPENMQKQLE-WCNEAPFYTLGPLTTDIAPGYDHITSAIGA 469 (647)
Q Consensus 401 ~~LGEL~krA~e~gVQVMIEG---PGHVP-------l~~I~~nv~lqk~-lc~~APfYvLGPLvTDIApGYDHItsAIGa 469 (647)
....+|.+.+.+++|-.-.=- ||-+. +.++..+-+|-|+ +=++.--.+=||= ----|-|-+-+=-
T Consensus 204 ~~fd~lleI~k~yDvtlSLGDglRPG~i~DA~D~aQ~~EL~tlgeL~krA~~~gVQvmvEGPG----Hvpl~~I~~nv~l 279 (432)
T COG0422 204 EHFDELLEIFKEYDVTLSLGDGLRPGCIADANDEAQFAELITLGELTKRAWEAGVQVMVEGPG----HVPLNEIEANVKL 279 (432)
T ss_pred hhHHHHHHHHHHhCeeeeccCCCCCCcccCCccHHHHHHHHHHHHHHHHHHHcCCEEEEECCC----cCcHHHHHHHHHH
Confidence 356788999999999765522 66665 2233334444333 3455666666661 0112334444333
Q ss_pred HHhhhcccceeeecCchhhcC-CC-----ChhHHHHHHHHHHHHHhHhhhhc--------CCcchh--------------
Q 006395 470 ANIGALGTALLCYVTPKEHLG-LP-----NRDDVKAGVIAYKIAAHAADLAK--------GHPLAQ-------------- 521 (647)
Q Consensus 470 A~aa~~Gad~LCYVTPaEHLg-LP-----~~eDVreGViA~kIAAHaaDlaK--------g~p~A~-------------- 521 (647)
-.--..||-| --|| || .-|.+-.++=|+-+|+.-+|+-= |.|...
T Consensus 280 ~k~~c~~aPf-------YvLGPLvTDIApGYDHItsAIGaA~aa~~Gad~LCYVTPaEHL~LP~~eDV~eGvIa~kIAAH 352 (432)
T COG0422 280 QKELCDGAPF-------YVLGPLVTDIAPGYDHITSAIGAAMAAWAGADMLCYVTPAEHLGLPNVEDVKEGVIAYKIAAH 352 (432)
T ss_pred HHHhcCCCCe-------eeeCCcccccCCCchHHHHHHHHHHHHhccCceEEecCcHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 3333445544 2355 43 34555555555555555566432 223221
Q ss_pred hHHHHHHH-HHhhcChHHHHhh---cCChHHHHhhh--hc----cCCCCCCCCCCcccCCCCCcchhhhhHHHHH
Q 006395 522 TWDDALSK-ARFEFRWMDQFAL---SLDPMTAMSFH--DE----TLPSEGAKVAHFCSMCGPKFCSMKITEDVRK 586 (647)
Q Consensus 522 ~rD~~mS~-AR~~~dWe~Qf~L---alDPe~Ar~~~--~~----~~p~~~~k~~~~CSMCGp~fCamki~~~~~~ 586 (647)
.=| ++| -+..-+|++-+.. .||-|+--+.- .+ -..+-..++.+.||||| +||++|+.++...
T Consensus 353 aaD--~aK~~~~a~~~D~~ms~aR~~~dWe~qf~lalDpe~Ar~~~~e~~p~~~~~csmcg-~~C~~k~~~~~~~ 424 (432)
T COG0422 353 AAD--LAKGHPGARDRDDAMSKARFEFDWEDQFELALDPERARAYHDETLPEESDKCAMCG-SMCAPKFCSMKIS 424 (432)
T ss_pred HHH--HhccCcchhhhhHHHHHHHHhCCHHHHHHHhcChHHHHHHhhccCCCCcchhhhhh-cccCHHHHHHHHh
Confidence 112 223 2355678876554 35655533221 11 12233345677999999 9999999987654
No 16
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=87.21 E-value=20 Score=32.97 Aligned_cols=110 Identities=14% Similarity=0.058 Sum_probs=69.4
Q ss_pred HhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcC----chhhhHHHHHHHHhHhc---eeEeccCC
Q 006395 310 AEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKEN----FAYEHWDEILDICNQYD---VALSIGDG 382 (647)
Q Consensus 310 aeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~EN----plY~~FD~ileI~k~YD---VtlSLGDG 382 (647)
-+.||....+|+.......... +..+| ...+++.+.+++|++.+ +++.+|.
T Consensus 37 ~~~gl~i~~~~~~~~~~~~~~~---------------------~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i~~~~g~- 94 (213)
T PF01261_consen 37 EDYGLKIASLHPPTNFWSPDEE---------------------NGSANDEREEALEYLKKAIDLAKRLGAKYIVVHSGR- 94 (213)
T ss_dssp HHTTCEEEEEEEEESSSCTGTT---------------------STTSSSHHHHHHHHHHHHHHHHHHHTBSEEEEECTT-
T ss_pred HHcCCeEEEEeccccccccccc---------------------ccCcchhhHHHHHHHHHHHHHHHHhCCCceeecCcc-
Confidence 3459998888876544433221 11122 23788999999999999 5666663
Q ss_pred CCCCCccCCCcHHHHHH-HHHHHHHHHHHHhcCCeEEeeCCCCCCCCch---HHHHHHHHHhcCC
Q 006395 383 LRPGSIYDANDTAQFAE-LLTQGELTRRAWDKDVQVMNEGPGHIPMHKI---PENMQKQLEWCNE 443 (647)
Q Consensus 383 LRPG~i~DA~D~AQ~~E-L~~LGEL~krA~e~gVQVMIEGPGHVPl~~I---~~nv~lqk~lc~~ 443 (647)
.+ .-.....+.++.. ...|.+|.++|.++||.+.+|--+..+..-. ++-.++-+++-+.
T Consensus 95 ~~--~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~l~~~~~~ 157 (213)
T PF01261_consen 95 YP--SGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPFSETPFSVEEIYRLLEEVDSP 157 (213)
T ss_dssp ES--SSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSSEESSHHHHHHHHHHHTTT
T ss_pred cc--cccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCccccchhhHHHHHHHHhhcCCC
Confidence 00 1111222223333 3478999999999999999998766665444 7777777776553
No 17
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=86.77 E-value=3.6 Score=37.85 Aligned_cols=78 Identities=21% Similarity=0.164 Sum_probs=48.8
Q ss_pred CChHHHHHHHHHHHHhCCCEeeecCCCC-----ChHHHHH---HHHhcC--CCc--cccchhhhHHHHhcCccCCCCHHH
Q 006395 234 SSIEEEVYKVQWATMWGADTVMDLSTGR-----HIHETRE---WILRNS--AVP--VGTVPIYQALEKVDGIAENLSWEV 301 (647)
Q Consensus 234 ~~ie~EveKl~~A~~~GADtvMDLSTGg-----di~~~R~---~Il~~s--pvP--vGTVPIYqA~~k~~g~~~dlt~e~ 301 (647)
...++=++.++.|.++|||.||=...-. +.+++.+ .|.+.+ .+| +...|--. ++.+.
T Consensus 62 ~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~-----------~~~~~ 130 (201)
T cd00945 62 TTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGL-----------KTADE 130 (201)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCC-----------CCHHH
Confidence 5578888999999999999998543321 1233333 445542 233 33333211 46777
Q ss_pred HHHHHHHHHhcCCCEEEEecc
Q 006395 302 FRDTLIEQAEQGVDYFTIHAG 322 (647)
Q Consensus 302 ~~d~i~eQaeqGVDf~TIHaG 322 (647)
+....+.-.+.|+|++-...|
T Consensus 131 ~~~~~~~~~~~g~~~iK~~~~ 151 (201)
T cd00945 131 IAKAARIAAEAGADFIKTSTG 151 (201)
T ss_pred HHHHHHHHHHhCCCEEEeCCC
Confidence 666655445689999998887
No 18
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=86.07 E-value=5.6 Score=39.79 Aligned_cols=78 Identities=17% Similarity=0.141 Sum_probs=45.6
Q ss_pred hhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHH-HHHHHHHHHHHHhcCCeEEeeCCCCCC---CCchHHHHHH
Q 006395 361 EHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAE-LLTQGELTRRAWDKDVQVMNEGPGHIP---MHKIPENMQK 436 (647)
Q Consensus 361 ~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~E-L~~LGEL~krA~e~gVQVMIEGPGHVP---l~~I~~nv~l 436 (647)
++|.+.|++|++.++..- .+-||...+..++..+.. +..+.+|++.|.++||++-||--+..+ .+....-.++
T Consensus 85 ~~~~~~i~~A~~lG~~~v---~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~~~~~~~~t~~~~~~l 161 (279)
T cd00019 85 ERLKDEIERCEELGIRLL---VFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIALETMAGQGNEIGSSFEELKEI 161 (279)
T ss_pred HHHHHHHHHHHHcCCCEE---EECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCCCCCHHHHHHH
Confidence 455555555555554421 122232221122333333 356888899999999999999755554 5666666777
Q ss_pred HHHhc
Q 006395 437 QLEWC 441 (647)
Q Consensus 437 qk~lc 441 (647)
.++++
T Consensus 162 i~~v~ 166 (279)
T cd00019 162 IDLIK 166 (279)
T ss_pred HHhcC
Confidence 77765
No 19
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=86.07 E-value=21 Score=37.25 Aligned_cols=63 Identities=25% Similarity=0.413 Sum_probs=33.3
Q ss_pred hhhhHHHHHHHHhH---hce---eEeccCCCCCCCccCC---CcHHHHHHHHHHHHHHHHHH--hcCCeEEeeCCCCC
Q 006395 359 AYEHWDEILDICNQ---YDV---ALSIGDGLRPGSIYDA---NDTAQFAELLTQGELTRRAW--DKDVQVMNEGPGHI 425 (647)
Q Consensus 359 lY~~FD~ileI~k~---YDV---tlSLGDGLRPG~i~DA---~D~AQ~~EL~~LGEL~krA~--e~gVQVMIEGPGHV 425 (647)
+.+.++++.+++.+ +.+ .|++|-|+ |..-.+. .|-.++++. +.++.+... ..++++++| ||..
T Consensus 186 ~~~~~~~~~~~~~~l~~~g~~~~~idiGGG~-~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~l~~E-pGR~ 259 (373)
T cd06828 186 FVEAAEKLLDLAAELRELGIDLEFLDLGGGL-GIPYRDEDEPLDIEEYAEA--IAEALKELCEGGPDLKLIIE-PGRY 259 (373)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEeCCCC-CcccCCCCCCCCHHHHHHH--HHHHHHHHHccCCCceEEEe-cCcc
Confidence 44455555555444 343 49999999 4332221 244444332 233333332 248999998 6653
No 20
>PRK11165 diaminopimelate decarboxylase; Provisional
Probab=85.96 E-value=32 Score=37.44 Aligned_cols=206 Identities=18% Similarity=0.212 Sum_probs=120.3
Q ss_pred CHHHHHHHHHcC-----CCHHHHHHHHhcceEEEecCCCCCCCCceEeecCCceeEeec---------cccCCCCCChHH
Q 006395 173 TEEMLYCATREK-----LDPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNAN---------IGNSAVASSIEE 238 (647)
Q Consensus 173 T~EMe~VA~~E~-----i~pE~vR~~VA~GraVIPaN~nh~~~~p~~IG~g~~tKVNAN---------IGtS~~~~~ie~ 238 (647)
.+.++.++++.+ ++.+.||+.+.+=+. .| . =.+-+|-|-| .|-..+.+|..|
T Consensus 14 ~~~~~~l~~~~~tP~~v~d~~~l~~n~~~l~~-~~------~-------i~yavKan~~~~il~~~~~~G~g~dvaS~~E 79 (420)
T PRK11165 14 AENLLRLPAEYGTPLWVYDADIIRRRIAQLRQ-FD------V-------IRFAQKACSNIHILRLMREQGVKVDAVSLGE 79 (420)
T ss_pred CcCHHHHHHHhCCCEEEEcHHHHHHHHHHHhc-cC------c-------ceEEehhCCCHHHHHHHHHcCCCEEEeCHHH
Confidence 345666676655 588888888776443 22 1 1267788876 355566666655
Q ss_pred HHHHHHHHHHhCCC------EeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHh----------c-C-cc------
Q 006395 239 EVYKVQWATMWGAD------TVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKV----------D-G-IA------ 294 (647)
Q Consensus 239 EveKl~~A~~~GAD------tvMDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~----------~-g-~~------ 294 (647)
++.|.+.|.+ .|+==..++.-.++++.+=....+-+.++--.+.+.+. + + ..
T Consensus 80 ----~~~a~~~G~~~~~~~~~Ii~~gp~k~~~~l~~a~~~gv~i~vDs~~el~~i~~~~~~~~v~lRvn~~~~~~~~~~~ 155 (420)
T PRK11165 80 ----IERALAAGYKPGTEPDEIVFTADVIDRATLARVVELKIPVNAGSIDMLDQLGQVSPGHRVWLRINPGFGHGHSQKT 155 (420)
T ss_pred ----HHHHHHcCCCCCCCCCeEEEeCCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHhcCCCcEEEEECCCCCCCCCCce
Confidence 5667778876 57777777787888887655545555554444444321 1 0 00
Q ss_pred --------CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHH
Q 006395 295 --------ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEI 366 (647)
Q Consensus 295 --------~dlt~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~i 366 (647)
--++.+++.+.+..-.+.|+++..||+=+-- ++ + ... +.+..+.+
T Consensus 156 ~~~~~~sKFGi~~~~~~~~~~~~~~~~l~l~GlH~H~GS-----------~~-~-----~~~----------~~~~~~~l 208 (420)
T PRK11165 156 NTGGENSKHGIWHEDLPAALAVIQRYGLKLVGIHMHIGS-----------GV-D-----YGH----------LEQVCGAM 208 (420)
T ss_pred ecCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeccC-----------CC-C-----hHH----------HHHHHHHH
Confidence 1345666655555445568999888874321 11 1 011 23344788
Q ss_pred HHHHhHhcee---EeccCCCCCCCccC---CCcHHHHHHHH-HHHHHHHHHHhcCCeEEeeCCCCC
Q 006395 367 LDICNQYDVA---LSIGDGLRPGSIYD---ANDTAQFAELL-TQGELTRRAWDKDVQVMNEGPGHI 425 (647)
Q Consensus 367 leI~k~YDVt---lSLGDGLRPG~i~D---A~D~AQ~~EL~-~LGEL~krA~e~gVQVMIEGPGHV 425 (647)
+++++++.+. |++|-|+ |....+ ..|-.++.+++ .+.+..+.....++++++| ||..
T Consensus 209 ~~~~~~~g~~~~~IdiGGGf-~~~y~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~E-PGR~ 272 (420)
T PRK11165 209 VRQVIELGQDIEAISAGGGL-SIPYREGEEPVDTEHYFGLWDAARKRIARHLGHPVKLEIE-PGRF 272 (420)
T ss_pred HHHHHHhCCCCcEEEeCCCc-ccCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCCceEEEc-cCcc
Confidence 8899998876 8999999 222222 13555555532 2223333333457888888 6654
No 21
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=84.52 E-value=7.9 Score=43.67 Aligned_cols=81 Identities=23% Similarity=0.329 Sum_probs=56.8
Q ss_pred cCCceeEeeccccCCCCCChHHHHHHHHHHHHhCCCEe-eecCCCCChH--HHHHHHHhcCC-Cc--cccchhhhHHHHh
Q 006395 217 RNFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTV-MDLSTGRHIH--ETREWILRNSA-VP--VGTVPIYQALEKV 290 (647)
Q Consensus 217 ~g~~tKVNANIGtS~~~~~ie~EveKl~~A~~~GADtv-MDLSTGgdi~--~~R~~Il~~sp-vP--vGTVPIYqA~~k~ 290 (647)
..-+.-|-|-||++. +..|.++..+++|+|-| +|.+.|..+. ++=+||-+..| ++ .|+|--.+....+
T Consensus 233 ~~~~l~vgaavg~~~------~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a 306 (505)
T PLN02274 233 KDGKLLVGAAIGTRE------SDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNL 306 (505)
T ss_pred CCCCEEEEEEEcCCc------cHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHH
Confidence 345667888898854 34688888899999987 6999887777 66667766554 44 3677555544333
Q ss_pred cCccCCCCHHHHHHHHHHHHhcCCCEE--EEecc
Q 006395 291 DGIAENLSWEVFRDTLIEQAEQGVDYF--TIHAG 322 (647)
Q Consensus 291 ~g~~~dlt~e~~~d~i~eQaeqGVDf~--TIHaG 322 (647)
.+.|+|++ ++|.|
T Consensus 307 -------------------~~aGaD~i~vg~g~G 321 (505)
T PLN02274 307 -------------------IQAGVDGLRVGMGSG 321 (505)
T ss_pred -------------------HHcCcCEEEECCCCC
Confidence 57899998 45655
No 22
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=84.38 E-value=12 Score=40.38 Aligned_cols=109 Identities=18% Similarity=0.242 Sum_probs=65.4
Q ss_pred CCCCHHHHHHHHHcC-------CCHHHHHHHHhcceEEEecCCCCCCCCceEeecCCceeEeeccccCCCCCChHHHHHH
Q 006395 170 GVITEEMLYCATREK-------LDPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYK 242 (647)
Q Consensus 170 GiIT~EMe~VA~~E~-------i~pE~vR~~VA~GraVIPaN~nh~~~~p~~IG~g~~tKVNANIGtS~~~~~ie~EveK 242 (647)
..|..+|..+|.+.| +++|..-..+ | ..| |. ++ -||+++|++.+ +.++
T Consensus 47 t~iN~~LA~~a~~~G~~~~~~k~~~e~~~~~~---r-----~~~-----~~----~l--~v~~~vg~~~~------~~~~ 101 (326)
T PRK05458 47 TIIDEKIAEWLAENGYFYIMHRFDPEARIPFI---K-----DMH-----EQ----GL--IASISVGVKDD------EYDF 101 (326)
T ss_pred chhHHHHHHHHHHcCCEEEEecCCHHHHHHHH---H-----hcc-----cc----cc--EEEEEecCCHH------HHHH
Confidence 378899999999987 4777766666 2 111 11 23 47999987652 4455
Q ss_pred HHHHHHhCC--CEee-ecCCCC--ChHHHHHHHHhcCC---CccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCC
Q 006395 243 VQWATMWGA--DTVM-DLSTGR--HIHETREWILRNSA---VPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGV 314 (647)
Q Consensus 243 l~~A~~~GA--DtvM-DLSTGg--di~~~R~~Il~~sp---vPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGV 314 (647)
+..-+++|+ |.|- |.+-|. .+.++=++|-+..| |.+|+|= |.|+..+ -.+.||
T Consensus 102 ~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~---------------t~e~a~~----l~~aGa 162 (326)
T PRK05458 102 VDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVG---------------TPEAVRE----LENAGA 162 (326)
T ss_pred HHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecC---------------CHHHHHH----HHHcCc
Confidence 555566655 9885 777652 23333445555544 4455543 3333322 256899
Q ss_pred CEEEEecc
Q 006395 315 DYFTIHAG 322 (647)
Q Consensus 315 Df~TIHaG 322 (647)
|++.+|-|
T Consensus 163 d~i~vg~~ 170 (326)
T PRK05458 163 DATKVGIG 170 (326)
T ss_pred CEEEECCC
Confidence 99877644
No 23
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=84.33 E-value=12 Score=40.26 Aligned_cols=119 Identities=13% Similarity=0.074 Sum_probs=77.3
Q ss_pred HHHHHHH-hcCCCEEEEe-ccccccc-------cccccCcc-----cCc-------cccccHHHHHHHHHcCCcCch---
Q 006395 304 DTLIEQA-EQGVDYFTIH-AGVLLRY-------IPLTAKRM-----TGI-------VSRGGSIHAKWCLAYHKENFA--- 359 (647)
Q Consensus 304 d~i~eQa-eqGVDf~TIH-aGv~~~~-------~~~~~~R~-----tgI-------VSRGGSi~a~Wml~~~~ENpl--- 359 (647)
+.-.+|. +.|.||+.|| +|...+. +....+++ ..+ .|.=-..|.+=....+.+|||
T Consensus 79 ~~Ak~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInS 158 (319)
T PRK04452 79 AWAKKCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGS 158 (319)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEE
Confidence 3345777 9999999999 5665531 11111111 112 244466777777777778887
Q ss_pred --hhhHHHHHHHHhHhceeE-eccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCC--eEEeeCCCCCCC----Cch
Q 006395 360 --YEHWDEILDICNQYDVAL-SIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDV--QVMNEGPGHIPM----HKI 430 (647)
Q Consensus 360 --Y~~FD~ileI~k~YDVtl-SLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gV--QVMIEGPGHVPl----~~I 430 (647)
.++|++++++|++|+..+ .+. +.+|..+-+|++++.++|| +=+|=-|+=-|+ .+.
T Consensus 159 at~en~~~i~~lA~~y~~~Vva~s----------------~~Dln~ak~L~~~l~~~Gi~~edIviDP~~~~lg~g~e~~ 222 (319)
T PRK04452 159 AEEDNYKKIAAAAMAYGHAVIAWS----------------PLDINLAKQLNILLTELGVPRERIVMDPTTGALGYGIEYS 222 (319)
T ss_pred CCHHHHHHHHHHHHHhCCeEEEEc----------------HHHHHHHHHHHHHHHHcCCCHHHEEEeCCcccccCCHHHH
Confidence 479999999999999743 333 2227788889999999999 766666766643 344
Q ss_pred HHHHHHHH
Q 006395 431 PENMQKQL 438 (647)
Q Consensus 431 ~~nv~lqk 438 (647)
-++++..+
T Consensus 223 ~~~~e~IR 230 (319)
T PRK04452 223 YSVMERIR 230 (319)
T ss_pred HHHHHHHH
Confidence 44444443
No 24
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=83.81 E-value=19 Score=38.64 Aligned_cols=28 Identities=21% Similarity=0.089 Sum_probs=14.8
Q ss_pred CChHHHHHHHHhc-CCCccccchhhhHHH
Q 006395 261 RHIHETREWILRN-SAVPVGTVPIYQALE 288 (647)
Q Consensus 261 gdi~~~R~~Il~~-spvPvGTVPIYqA~~ 288 (647)
..+.+.++.+-+. +.+-++..+.+-++.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~h~~l~ 150 (415)
T cd01297 122 ATFAEYLDALEARPPAVNVAALVGHAALR 150 (415)
T ss_pred CCHHHHHHHHHhcCCCcCeeeccCcHHHH
Confidence 3455555555343 356666555555554
No 25
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated. The sequences in this family contain the pyridoxal binding domain (pfam02784) and C-terminal sheet domain (pfam00278) of a family of Pyridoxal-dependent decarboxylases. Characterized enzymes in this family decarboxylate substrates such as ornithine, diaminopimelate and arginine. The genes of the family modeled here, with the exception of those observed in certain Burkholderia species, are all found in the context of exopolysaccharide biosynthesis loci containing the exosortase/PEP-CTERM protein sorting system. More specifically, these are characteristic of the type 1 exosortase system represented by the Genome Property GenProp0652. The substrate of these enzymes may be a precursor of the carrier or linker which is hypothesized to release the PEP-CTERM protein from the exosortase enzyme. These enzymes are apparently most closely related to the diaminopimelate decarboxylase modeled by TIGR01048
Probab=83.50 E-value=65 Score=34.33 Aligned_cols=172 Identities=18% Similarity=0.170 Sum_probs=94.5
Q ss_pred HHHHHHHcC------CCHHHHHHHHhcceEEEecCCCCCCCCceEeecCCceeEeec---------cccCCCCCChHHHH
Q 006395 176 MLYCATREK------LDPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNAN---------IGNSAVASSIEEEV 240 (647)
Q Consensus 176 Me~VA~~E~------i~pE~vR~~VA~GraVIPaN~nh~~~~p~~IG~g~~tKVNAN---------IGtS~~~~~ie~Ev 240 (647)
.+.++++-| ++++.|++.+.+=+-.+|.+. + =.+-+|-|++ -|..-+.+|+.|
T Consensus 15 ~~~l~~~~g~tP~~v~d~~~l~~n~~~l~~~~~~~~-----~-----i~yavKaN~~~~vl~~l~~~g~g~dvaS~~E-- 82 (398)
T TIGR03099 15 LTELAARAGGTPFYAYDRGLVSERVAALRKALPEEL-----A-----IHYAVKANPMPALLAHMAPLVDGFDVASAGE-- 82 (398)
T ss_pred HHHHHHHhCCCCEEEEeHHHHHHHHHHHHHhccccC-----c-----EEEEeccCCCHHHHHHHHHcCCcEEEeCHHH--
Confidence 345555555 577888887776555555321 1 1235666665 344445555544
Q ss_pred HHHHHHHHhCCC--EeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHh--------------c--------C----
Q 006395 241 YKVQWATMWGAD--TVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKV--------------D--------G---- 292 (647)
Q Consensus 241 eKl~~A~~~GAD--tvMDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~--------------~--------g---- 292 (647)
++.+.+.|.+ .|+=...++...+++..+-.+..+-|-+..=.+.+.+. + |
T Consensus 83 --~~~~~~~G~~~~~I~~~gp~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~~~~~~v~LRin~~~~~~~~~~~~~ 160 (398)
T TIGR03099 83 --LAVALDTGYDPGCISFAGPGKTDAELRRALAAGVLINVESLRELNRLAALSEALGLRARVAVRVNPDFELKGSGMKMG 160 (398)
T ss_pred --HHHHHHcCCChhHEEEeCCCCCHHHHHHHHhCCCEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCCCCCCCcccccC
Confidence 4456677876 57777777888888887655555545554444333211 1 0
Q ss_pred ---ccCCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHH
Q 006395 293 ---IAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDI 369 (647)
Q Consensus 293 ---~~~dlt~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI 369 (647)
.=--++.+++.+.++.-.+.|+.+..||+=+.-+.. +-. .+... +...|+.++++
T Consensus 161 ~~~srFGi~~~e~~~~~~~~~~~~l~l~Glh~h~gs~~~-----------~~~-~~~~~----------~~~~~~~~~~~ 218 (398)
T TIGR03099 161 GGAKQFGIDAEQVPAALAFIKAADLDFQGFHIFAGSQNL-----------NAE-AIIEA----------QAKTLALALRL 218 (398)
T ss_pred CCCCcCCCCHHHHHHHHHHHHhCCCeEEEEEecccccCC-----------CHH-HHHHH----------HHHHHHHHHHH
Confidence 001345666666655544457777666643221111 100 11111 23456777788
Q ss_pred HhHhce---eEeccCCC
Q 006395 370 CNQYDV---ALSIGDGL 383 (647)
Q Consensus 370 ~k~YDV---tlSLGDGL 383 (647)
.+++.+ .|++|-|+
T Consensus 219 ~~~~g~~~~~idiGGG~ 235 (398)
T TIGR03099 219 AESAPAPVRVINIGGGF 235 (398)
T ss_pred HHHhCCCCCEEEeCCcc
Confidence 887665 58999998
No 26
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=82.77 E-value=4.5 Score=39.60 Aligned_cols=113 Identities=25% Similarity=0.280 Sum_probs=70.7
Q ss_pred eeEeeccccCCCCCChHHHHHHHHHHHHhCCCEe---eecCC--CCChHHHHHHHHhcCCCccccch---hhhHHHHhcC
Q 006395 221 VKVNANIGNSAVASSIEEEVYKVQWATMWGADTV---MDLST--GRHIHETREWILRNSAVPVGTVP---IYQALEKVDG 292 (647)
Q Consensus 221 tKVNANIGtS~~~~~ie~EveKl~~A~~~GADtv---MDLST--Ggdi~~~R~~Il~~spvPvGTVP---IYqA~~k~~g 292 (647)
+++...+|........+.=+.-++.|++.|||.| ++.+- .++.+++.++|-+-...--| +| ||+.
T Consensus 53 ~~v~~~~~fp~g~~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g-~~lkvI~e~------ 125 (203)
T cd00959 53 VKVCTVIGFPLGATTTEVKVAEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGG-APLKVILET------ 125 (203)
T ss_pred cEEEEEEecCCCCCcHHHHHHHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCC-CeEEEEEec------
Confidence 5555555555544556666666889999999976 44431 45778787777643332112 33 3442
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCCEEEEecccc-----cccccc---c-cCcccCcccccc
Q 006395 293 IAENLSWEVFRDTLIEQAEQGVDYFTIHAGVL-----LRYIPL---T-AKRMTGIVSRGG 343 (647)
Q Consensus 293 ~~~dlt~e~~~d~i~eQaeqGVDf~TIHaGv~-----~~~~~~---~-~~R~tgIVSRGG 343 (647)
..|+.|.+....+--+|-|.||+-.=.|.. .+.+.. . ..+ ++|+-.||
T Consensus 126 --~~l~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~~~-v~ik~aGG 182 (203)
T cd00959 126 --GLLTDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVGGR-VGVKAAGG 182 (203)
T ss_pred --CCCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhCCC-ceEEEeCC
Confidence 345788899999999999999998875543 233221 1 123 47777777
No 27
>PRK08227 autoinducer 2 aldolase; Validated
Probab=81.96 E-value=4.9 Score=42.04 Aligned_cols=144 Identities=15% Similarity=0.155 Sum_probs=84.6
Q ss_pred chhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCcccc--ccHHHHHHHHHcCCcCc
Q 006395 281 VPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSR--GGSIHAKWCLAYHKENF 358 (647)
Q Consensus 281 VPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSR--GGSi~a~Wml~~~~ENp 358 (647)
||+=|.++. |.+..| +++-.+|.+-++ |+|-+..|-|+.+.+.+.. +=.++|=| ||+-+. .+|
T Consensus 27 va~DHG~~~--Gp~~gl--~~~~~~~~~i~~-~~da~~~~~G~~~~~~~~~--~~~~lil~ls~~t~~~--------~~~ 91 (264)
T PRK08227 27 LAFDHGYFQ--GPTTGL--ERIDINIAPLFP-YADVLMCTRGILRSVVPPA--TNKPVVLRASGGNSIL--------KEL 91 (264)
T ss_pred EECCCcccc--CCCccc--cChHHHHHHHhh-cCCEEEeChhHHHhccccc--CCCcEEEEEcCCCCCC--------CCC
Confidence 566555442 444444 445566666666 8999999999988765532 11234332 222111 111
Q ss_pred hhhhHHHHHHHHhHhceeEeccCCCCCCCccCCC-----cHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHH
Q 006395 359 AYEHWDEILDICNQYDVALSIGDGLRPGSIYDAN-----DTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPEN 433 (647)
Q Consensus 359 lY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~-----D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~n 433 (647)
.+ ..++-|.=|.+|-|+-+=+- .+.+-+-|..||++++.|.++|+-+|+
T Consensus 92 ~~------------~~l~~sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla-------------- 145 (264)
T PRK08227 92 SN------------EAVAVDMEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMA-------------- 145 (264)
T ss_pred Cc------------ccceecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEE--------------
Confidence 11 22334444555555422110 233455677899999999999999993
Q ss_pred HHHHHHhcCCCCccccCccccccCCCchhHHHhHHHHHhhhcccceeee
Q 006395 434 MQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALLCY 482 (647)
Q Consensus 434 v~lqk~lc~~APfYvLGPLvTDIApGYDHItsAIGaA~aa~~Gad~LCY 482 (647)
.|.-|+-+.| ..|-|.-|.. +++-.|||++--
T Consensus 146 ------------~~prG~~~~~---~~~~ia~aaR--iaaELGADiVK~ 177 (264)
T PRK08227 146 ------------VTAVGKDMVR---DARYFSLATR--IAAEMGAQIIKT 177 (264)
T ss_pred ------------EecCCCCcCc---hHHHHHHHHH--HHHHHcCCEEec
Confidence 3455766555 6665655544 678899999863
No 28
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=81.39 E-value=17 Score=33.41 Aligned_cols=76 Identities=17% Similarity=0.096 Sum_probs=55.2
Q ss_pred hhhHHHHHHHHhHhceeE-eccCCCCCCC----ccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCC---CCCCCchH
Q 006395 360 YEHWDEILDICNQYDVAL-SIGDGLRPGS----IYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPG---HIPMHKIP 431 (647)
Q Consensus 360 Y~~FD~ileI~k~YDVtl-SLGDGLRPG~----i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPG---HVPl~~I~ 431 (647)
-..++++.+++++|++.+ ++.=..+... ..+++|+ --.-+..+-+..+.|.+.|+..|+=.+| +-+-...+
T Consensus 26 ~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~ 104 (213)
T PF01261_consen 26 DDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTE 104 (213)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHH
T ss_pred hHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceeecCcccccccCCCHH
Confidence 568999999999999993 3332233322 3577877 5666778899999999999999999999 44445555
Q ss_pred HHHHH
Q 006395 432 ENMQK 436 (647)
Q Consensus 432 ~nv~l 436 (647)
++.+.
T Consensus 105 ~~~~~ 109 (213)
T PF01261_consen 105 ENWER 109 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 29
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=80.63 E-value=53 Score=31.16 Aligned_cols=78 Identities=19% Similarity=0.175 Sum_probs=43.3
Q ss_pred CCCChHHHHHHHHHHHHhCCCEe----eecCCCCCh---HHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHH
Q 006395 232 VASSIEEEVYKVQWATMWGADTV----MDLSTGRHI---HETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRD 304 (647)
Q Consensus 232 ~~~~ie~EveKl~~A~~~GADtv----MDLSTGgdi---~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d 304 (647)
...|+..=.+.++.+.+.|+|.| ||.++-.+. .++-++|.+.++.|++ |+ |.-.+..+
T Consensus 7 ~~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-v~--------------l~~~d~~~ 71 (211)
T cd00429 7 LSADFANLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPLD-VH--------------LMVENPER 71 (211)
T ss_pred ecCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhCCCcEE-EE--------------eeeCCHHH
Confidence 34556666677889999999987 343332222 1223333333223321 11 11111133
Q ss_pred HHHHHHhcCCCEEEEecccc
Q 006395 305 TLIEQAEQGVDYFTIHAGVL 324 (647)
Q Consensus 305 ~i~eQaeqGVDf~TIHaGv~ 324 (647)
.++.-++.|+|.++||.+..
T Consensus 72 ~~~~~~~~g~dgv~vh~~~~ 91 (211)
T cd00429 72 YIEAFAKAGADIITFHAEAT 91 (211)
T ss_pred HHHHHHHcCCCEEEECccch
Confidence 45556799999999999865
No 30
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=80.52 E-value=57 Score=31.48 Aligned_cols=179 Identities=16% Similarity=0.137 Sum_probs=89.0
Q ss_pred CCCChHHHHHHHHHHHHhCCCEe----eecCCCCC---hHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHH
Q 006395 232 VASSIEEEVYKVQWATMWGADTV----MDLSTGRH---IHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRD 304 (647)
Q Consensus 232 ~~~~ie~EveKl~~A~~~GADtv----MDLSTGgd---i~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d 304 (647)
...|+..=.+.++.+.++|+|.| ||.+.-.+ .-+.-++|.+.++.+++ |++. -.+..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-v~l~--------------v~d~~~ 75 (220)
T PRK05581 11 LSADFARLGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKLPLD-VHLM--------------VENPDR 75 (220)
T ss_pred hcCCHHHHHHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCCCcEE-EEee--------------eCCHHH
Confidence 44455555567788899999985 56554333 23334444454443321 2221 112222
Q ss_pred HHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCc----hhhhHHHHHHHHhHhceeEecc
Q 006395 305 TLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENF----AYEHWDEILDICNQYDVALSIG 380 (647)
Q Consensus 305 ~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENp----lY~~FD~ileI~k~YDVtlSLG 380 (647)
.++.-++-|+|.+++|.+-. +..... .++++.++...= .++.++++.++...-|. +=+
T Consensus 76 ~i~~~~~~g~d~v~vh~~~~-~~~~~~---------------~~~~~~~~~~~g~~~~~~t~~e~~~~~~~~~d~-i~~- 137 (220)
T PRK05581 76 YVPDFAKAGADIITFHVEAS-EHIHRL---------------LQLIKSAGIKAGLVLNPATPLEPLEDVLDLLDL-VLL- 137 (220)
T ss_pred HHHHHHHcCCCEEEEeeccc-hhHHHH---------------HHHHHHcCCEEEEEECCCCCHHHHHHHHhhCCE-EEE-
Confidence 34555688999999999854 222111 444444443300 13456777777655562 223
Q ss_pred CCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhc--CCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCcccc
Q 006395 381 DGLRPGSIYDANDTAQFAELLTQGELTRRAWDK--DVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTT 454 (647)
Q Consensus 381 DGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~--gVQVMIEGPGHVPl~~I~~nv~lqk~lc~~APfYvLGPLvT 454 (647)
+++.||--..+.+..-+..+..+-++ .-++ ++.|++-| |= +. +|+..-.+ .++-..+.|--.+
T Consensus 138 ~~~~~g~tg~~~~~~~~~~i~~~~~~---~~~~~~~~~i~v~G-GI---~~--~nv~~l~~--~GaD~vvvgSai~ 202 (220)
T PRK05581 138 MSVNPGFGGQKFIPEVLEKIRELRKL---IDERGLDILIEVDG-GI---NA--DNIKECAE--AGADVFVAGSAVF 202 (220)
T ss_pred EEECCCCCcccccHHHHHHHHHHHHH---HHhcCCCceEEEEC-CC---CH--HHHHHHHH--cCCCEEEEChhhh
Confidence 35667665555444333333322222 2223 25566777 52 22 35544333 3455555554433
No 31
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=80.48 E-value=2.5 Score=47.13 Aligned_cols=279 Identities=19% Similarity=0.194 Sum_probs=150.0
Q ss_pred ChHHHHHHHHHHHHhCCCEeeecCCCC----ChHHHHHHHHhcC----CCccccchhhhHHHHhcCccCCCCHHHHHHHH
Q 006395 235 SIEEEVYKVQWATMWGADTVMDLSTGR----HIHETREWILRNS----AVPVGTVPIYQALEKVDGIAENLSWEVFRDTL 306 (647)
Q Consensus 235 ~ie~EveKl~~A~~~GADtvMDLSTGg----di~~~R~~Il~~s----pvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i 306 (647)
.+++.++=++.-.+.|...|.=|..-- +-.+-=+..|+.+ +=..+-+|+ ..-.++.+++.+
T Consensus 26 ~~~e~~~~l~~l~~~g~~dvl~ltiDsytr~~~~~~a~~~l~~~~~~~~~~lnG~P~-----------v~~g~~~~R~l~ 94 (428)
T cd00245 26 LLEEHIELLRTLQEEGAADVLPLTIDSYTRVNDYEEAEEGLEESIKAGKSLLNGFPI-----------VNHGVKTCRKLL 94 (428)
T ss_pred CHHHHHHHHHHHHhcCCCCeeccccccchhhhhhHHHHHHHHhhhhcCccccCCCCc-----------ccccHHHHHHHH
Confidence 567777777777777865555333322 2222224444444 223444444 333445555555
Q ss_pred HHHHhcCCCEEE-EeccccccccccccC-cccCcccc-ccHHHHHHHHHcCCcCchh---hhH---HHHHHHHhHhceeE
Q 006395 307 IEQAEQGVDYFT-IHAGVLLRYIPLTAK-RMTGIVSR-GGSIHAKWCLAYHKENFAY---EHW---DEILDICNQYDVAL 377 (647)
Q Consensus 307 ~eQaeqGVDf~T-IHaGv~~~~~~~~~~-R~tgIVSR-GGSi~a~Wml~~~~ENplY---~~F---D~ileI~k~YDVtl 377 (647)
+ +|||=- +-|| |.+...+..- =-+|+-|- ||-| .||+-..+-=||= .+| |+||..-.+.+|.+
T Consensus 95 ~-----~~~~PlqvRhG-t~d~~~l~e~~~a~g~~a~egg~i--sy~~py~k~~~Le~si~~wqy~~rl~~~y~e~gv~i 166 (428)
T cd00245 95 E-----GVDFPVQVRHG-TPDARLLAEIAIASGFDATEGGPI--SYNLPYSKNVPLEKSIENWQYCDRLVGFYEENGVPI 166 (428)
T ss_pred H-----hCCCCEeeccC-CccHHHHHHHHHHhCcccccccce--eeccccCCCCCHHHHHHHHHHHHHHHHHHHhcCcee
Confidence 4 345533 4444 3333222110 11233332 2322 3666666554553 356 77777777778776
Q ss_pred eccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCC-CCCC-CchHHHHHHHHHhcCC------------
Q 006395 378 SIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPG-HIPM-HKIPENMQKQLEWCNE------------ 443 (647)
Q Consensus 378 SLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPG-HVPl-~~I~~nv~lqk~lc~~------------ 443 (647)
- =+-+=|-.--+..+.-.++- -.|-.| .|++.||.-+.=+=+ |.-+ .+|. -++--++++..
T Consensus 167 n-~E~fg~l~~~l~pptla~ai-aylea~--la~glgV~~lS~~f~~~~n~~qDIA-k~RA~RrL~a~~l~efG~~d~~~ 241 (428)
T cd00245 167 N-REPFGPLTGTLVPPSILIAI-QILEAL--LAAEQGVKSISVGYAQQGNLTQDIA-ALRALRELAKEYLPKYGYKDVDI 241 (428)
T ss_pred c-ccCCcCcccCcCCcHHHHHH-HHHHHH--HHccCCCCEEEEEeecCCCHHHHHH-HHHHHHHHHHHHHHHcCCCCeEE
Confidence 5 23333322233333222211 111112 456677766544322 2222 2222 12222222211
Q ss_pred -CCcc-ccCccccccCCCchhHHHhHHHHHhhhcccceeeecCchhhcCCCChhHHHHHHH-HHHHHHhHhhhhcCC-cc
Q 006395 444 -APFY-TLGPLTTDIAPGYDHITSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKAGVI-AYKIAAHAADLAKGH-PL 519 (647)
Q Consensus 444 -APfY-vLGPLvTDIApGYDHItsAIGaA~aa~~Gad~LCYVTPaEHLgLP~~eDVreGVi-A~kIAAHaaDlaKg~-p~ 519 (647)
--|+ -+|..+.|-.-.|-+|+. ++..|+..||+.|=-.|+.|=+++|+.|+++.++- +-+|.+|-.++..-. +.
T Consensus 242 ~~~fht~~ggfplt~qqa~~nI~r--~a~aAvLgGaqslhvkt~dEA~giPT~ea~~~ALr~Tqqii~~e~g~~~~~s~~ 319 (428)
T cd00245 242 HTVFHQWMGGFPRDESGAFGLIGY--AATIAALSGATKVIVKTPDEAHGIPTIEANVAGLKATATVLNMLRGQKFPPSEA 319 (428)
T ss_pred EEEEEeccCCCCcchHHHHHHHHH--HHHHHHHcCCCEEEeCChhhhccCCCHHHHHHHHHHHHHHHHHhcCCCccccHH
Confidence 1122 268888888889999999 88888899999999999999999999999999999 888888876654221 11
Q ss_pred -hhhHHHHHHHHHhhcChHHH
Q 006395 520 -AQTWDDALSKARFEFRWMDQ 539 (647)
Q Consensus 520 -A~~rD~~mS~AR~~~dWe~Q 539 (647)
...-|.-..+|+.-++.-..
T Consensus 320 VE~~t~~ie~Ea~~ild~I~e 340 (428)
T cd00245 320 IEQEEEIIKAEVKAILDKVFE 340 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 12334445566666654433
No 32
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=80.04 E-value=14 Score=37.38 Aligned_cols=75 Identities=20% Similarity=0.232 Sum_probs=55.1
Q ss_pred HHHHHH-HHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCC
Q 006395 237 EEEVYK-VQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVD 315 (647)
Q Consensus 237 e~EveK-l~~A~~~GADtvMDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGVD 315 (647)
.++++. .+.|.+.|||-|- .|+.++++.+|+.. +.+++| ++-+ |.+..-|.+++++.+.+-.+.|++
T Consensus 155 ~~~~~~~~~~a~~~GADyik-t~~~~~~~~l~~~~-~~~~iP-----Vva~-----GGi~~~~~~~~~~~i~~~~~aGa~ 222 (258)
T TIGR01949 155 PELVAHAARLGAELGADIVK-TPYTGDIDSFRDVV-KGCPAP-----VVVA-----GGPKTNSDREFLQMIKDAMEAGAA 222 (258)
T ss_pred HHHHHHHHHHHHHHCCCEEe-ccCCCCHHHHHHHH-HhCCCc-----EEEe-----cCCCCCCHHHHHHHHHHHHHcCCc
Confidence 356777 4889999999998 67777888888664 445544 4222 555667899999999999999999
Q ss_pred EEEEeccc
Q 006395 316 YFTIHAGV 323 (647)
Q Consensus 316 f~TIHaGv 323 (647)
.+.+=..+
T Consensus 223 Gia~g~~i 230 (258)
T TIGR01949 223 GVAVGRNI 230 (258)
T ss_pred EEehhhHh
Confidence 66544443
No 33
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=80.00 E-value=7.6 Score=39.98 Aligned_cols=182 Identities=15% Similarity=0.097 Sum_probs=95.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEec-----cccccccccccCcccCccc--------------cccHHHHHHHHHcCC
Q 006395 295 ENLSWEVFRDTLIEQAEQGVDYFTIHA-----GVLLRYIPLTAKRMTGIVS--------------RGGSIHAKWCLAYHK 355 (647)
Q Consensus 295 ~dlt~e~~~d~i~eQaeqGVDf~TIHa-----Gv~~~~~~~~~~R~tgIVS--------------RGGSi~a~Wml~~~~ 355 (647)
..++++..++..++|.++|.|++=|=+ |...-..+..-.|+..+|. .==. .+.=++.++.
T Consensus 19 ~~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~plSIDT~~~~-v~e~al~~G~ 97 (257)
T cd00739 19 RFLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVLISVDTFRAE-VARAALEAGA 97 (257)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEeCCCHH-HHHHHHHhCC
Confidence 348899999999999999999999953 3221000001122221111 1111 1222333221
Q ss_pred c--Cc-hhhhH-HHHHHHHhHhceeEeccC--CCCCCCccCCCc-HHHHHHH-HHHHHHHHHHHhcCC---eEEeeCCCC
Q 006395 356 E--NF-AYEHW-DEILDICNQYDVALSIGD--GLRPGSIYDAND-TAQFAEL-LTQGELTRRAWDKDV---QVMNEGPGH 424 (647)
Q Consensus 356 E--Np-lY~~F-D~ileI~k~YDVtlSLGD--GLRPG~i~DA~D-~AQ~~EL-~~LGEL~krA~e~gV---QVMIEGPGH 424 (647)
. |- -...+ +++++++++|++.+=+=. | .|....+-.+ ..-+.|. ..+-++.++|.++|| ++++ =||+
T Consensus 98 ~iINdisg~~~~~~~~~l~~~~~~~vV~m~~~g-~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~Ii~-DPg~ 175 (257)
T cd00739 98 DIINDVSGGSDDPAMLEVAAEYGAPLVLMHMRG-TPKTMQENPYYEDVVDEVLSFLEARLEAAESAGVARNRIIL-DPGI 175 (257)
T ss_pred CEEEeCCCCCCChHHHHHHHHcCCCEEEECCCC-CCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEE-ecCC
Confidence 1 10 01122 899999999987776633 3 3443211000 0012333 557788999999999 5555 4677
Q ss_pred CCCCchHHHHHHHHHh---c-CCCCccccCc-------cccccCCCchhHHHhHHHHHhhhccccee
Q 006395 425 IPMHKIPENMQKQLEW---C-NEAPFYTLGP-------LTTDIAPGYDHITSAIGAANIGALGTALL 480 (647)
Q Consensus 425 VPl~~I~~nv~lqk~l---c-~~APfYvLGP-------LvTDIApGYDHItsAIGaA~aa~~Gad~L 480 (647)
-....-+.|+++-+.+ . -+.|. ++|. -+|+--+.=-+..++.=.+++...||++|
T Consensus 176 gf~ks~~~~~~~l~~i~~l~~~~~pi-l~G~SrkSfig~~~~~~~~~r~~~t~~~~~~~~~~Ga~ii 241 (257)
T cd00739 176 GFGKTPEHNLELLRRLDELKQLGLPV-LVGASRKSFIGALLGREPKDRDWGTLALSALAAANGADIV 241 (257)
T ss_pred CcccCHHHHHHHHHHHHHHHhCCCcE-EEEecccHHHHHhcCCCccccchhHHHHHHHHHHcCCCEE
Confidence 6655544444433322 1 26786 3444 23333333233344444556777888876
No 34
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=79.89 E-value=8.8 Score=39.48 Aligned_cols=182 Identities=14% Similarity=0.121 Sum_probs=93.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccc---ccc--ccCcccCccc--------------cccHHHHHHHHHcCC
Q 006395 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRY---IPL--TAKRMTGIVS--------------RGGSIHAKWCLAYHK 355 (647)
Q Consensus 295 ~dlt~e~~~d~i~eQaeqGVDf~TIHaGv~~~~---~~~--~~~R~tgIVS--------------RGGSi~a~Wml~~~~ 355 (647)
..++.+..++..++|.++|.|++=|=+--++.. +.. ...|+..+|. .-=..+ .=.+.++.
T Consensus 18 ~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT~~~~vi-~~al~~G~ 96 (257)
T TIGR01496 18 RFLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDTYRAEVA-RAALEAGA 96 (257)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCCHHHH-HHHHHcCC
Confidence 347889999999999999999999932111110 000 0012322221 111111 12222222
Q ss_pred c--Cch-hhhHHHHHHHHhHhceeEeccC--CCCCCCccCCCc-HHHHHH-HHHHHHHHHHHHhcCC---eEEeeCCCCC
Q 006395 356 E--NFA-YEHWDEILDICNQYDVALSIGD--GLRPGSIYDAND-TAQFAE-LLTQGELTRRAWDKDV---QVMNEGPGHI 425 (647)
Q Consensus 356 E--Npl-Y~~FD~ileI~k~YDVtlSLGD--GLRPG~i~DA~D-~AQ~~E-L~~LGEL~krA~e~gV---QVMIEGPGHV 425 (647)
. |-. +..++++++++++|++.+=+-. | .|....+..+ ..-+.| +..+-+++++|.++|| ++++. ||.-
T Consensus 97 ~iINsis~~~~~~~~~l~~~~~~~vV~m~~~g-~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~iilD-Pg~g 174 (257)
T TIGR01496 97 DIINDVSGGQDPAMLEVAAEYGVPLVLMHMRG-TPRTMQENPHYEDVVEEVLRFLEARAEELVAAGVAAERIILD-PGIG 174 (257)
T ss_pred CEEEECCCCCCchhHHHHHHcCCcEEEEeCCC-CCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEE-CCCC
Confidence 1 110 1127899999999987766532 3 3544322111 111222 3446778899999999 55555 5776
Q ss_pred CCCchHHHHHHHHHhc----CCCCccccCc-------cccccCCCchhHHHhHHHHHhhhccccee
Q 006395 426 PMHKIPENMQKQLEWC----NEAPFYTLGP-------LTTDIAPGYDHITSAIGAANIGALGTALL 480 (647)
Q Consensus 426 Pl~~I~~nv~lqk~lc----~~APfYvLGP-------LvTDIApGYDHItsAIGaA~aa~~Gad~L 480 (647)
+...++.|+++-+.+- -+.|.. +|. -+|+-.+.=-...++.-.+++...|+++|
T Consensus 175 f~ks~~~~~~~l~~i~~l~~~~~p~l-~G~SrkSfig~v~~~~~~~r~~~t~~~~~~a~~~Ga~ii 239 (257)
T TIGR01496 175 FGKTPEHNLELLKHLEEFVALGYPLL-VGASRKSFIGALLGTPPEERLEGTLAASAYAVQKGADIV 239 (257)
T ss_pred cccCHHHHHHHHHHHHHHHhCCCcEE-EEecccHHHHhhcCCChhhhhHHHHHHHHHHHHcCCCEE
Confidence 7777776665544321 234432 121 12222222233444445556666677765
No 35
>PRK09989 hypothetical protein; Provisional
Probab=79.83 E-value=9.5 Score=37.91 Aligned_cols=77 Identities=14% Similarity=0.169 Sum_probs=51.1
Q ss_pred hhhHHHHHHHHhHhcee-EeccCCCCCCCccCCCcHHHHH--HHHHHHHHHHHHHhcCCeEEeeC--CC---CCCCCchH
Q 006395 360 YEHWDEILDICNQYDVA-LSIGDGLRPGSIYDANDTAQFA--ELLTQGELTRRAWDKDVQVMNEG--PG---HIPMHKIP 431 (647)
Q Consensus 360 Y~~FD~ileI~k~YDVt-lSLGDGLRPG~i~DA~D~AQ~~--EL~~LGEL~krA~e~gVQVMIEG--PG---HVPl~~I~ 431 (647)
-+.+++.+++|++.++. +.+.-|..| +..+..+.. =...|.+|+++|.+.||++.+|+ ++ |.-++...
T Consensus 84 ~~~l~~~i~~A~~lg~~~v~v~~g~~~----~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~l~~~~~~~~~~~~~~ 159 (258)
T PRK09989 84 RADIDLALEYALALNCEQVHVMAGVVP----AGEDAERYRAVFIDNLRYAADRFAPHGKRILVEALSPGVKPHYLFSSQY 159 (258)
T ss_pred HHHHHHHHHHHHHhCcCEEEECccCCC----CCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCCCCccCCHH
Confidence 46789999999999984 544444444 223322222 24678999999999999999998 22 34466555
Q ss_pred HHHHHHHHh
Q 006395 432 ENMQKQLEW 440 (647)
Q Consensus 432 ~nv~lqk~l 440 (647)
.-.++.+++
T Consensus 160 ~~~~ll~~v 168 (258)
T PRK09989 160 QALAIVEEV 168 (258)
T ss_pred HHHHHHHHc
Confidence 555555553
No 36
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=79.73 E-value=13 Score=37.67 Aligned_cols=85 Identities=20% Similarity=0.198 Sum_probs=49.3
Q ss_pred eccccCCCCCChHHHHHHHHHHHHhCCCEe-eecCCC-----C----C---hHHHHHHHHhcCCCccccchhhhHHHHhc
Q 006395 225 ANIGNSAVASSIEEEVYKVQWATMWGADTV-MDLSTG-----R----H---IHETREWILRNSAVPVGTVPIYQALEKVD 291 (647)
Q Consensus 225 ANIGtS~~~~~ie~EveKl~~A~~~GADtv-MDLSTG-----g----d---i~~~R~~Il~~spvPvGTVPIYqA~~k~~ 291 (647)
+||+.+ +.++=++=++.+.++|+|.| +++|+- . + +.++-+++-+...+||. .|..
T Consensus 103 ~si~g~----~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~--------vKl~ 170 (289)
T cd02810 103 ASVGGS----SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLL--------VKLS 170 (289)
T ss_pred EEeccC----CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEE--------EEeC
Confidence 466544 33433444666677899977 455532 1 1 22333344444333332 1221
Q ss_pred CccCCCCHHHHHHHHHHHHhcCCCEEEEecccc
Q 006395 292 GIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVL 324 (647)
Q Consensus 292 g~~~dlt~e~~~d~i~eQaeqGVDf~TIHaGv~ 324 (647)
-.++.|++.+.++.-.+.||||+++|.++.
T Consensus 171 ---~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~ 200 (289)
T cd02810 171 ---PYFDLEDIVELAKAAERAGADGLTAINTIS 200 (289)
T ss_pred ---CCCCHHHHHHHHHHHHHcCCCEEEEEcccC
Confidence 135677888888877788999999998754
No 37
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=79.71 E-value=6.4 Score=38.77 Aligned_cols=96 Identities=16% Similarity=0.145 Sum_probs=51.0
Q ss_pred CCceeE--eeccccCCCCCChHHHHHHHHHHHHhCCCEe-eecCCCC--------ChHHHHHHHHhcCCCcc-ccchhhh
Q 006395 218 NFLVKV--NANIGNSAVASSIEEEVYKVQWATMWGADTV-MDLSTGR--------HIHETREWILRNSAVPV-GTVPIYQ 285 (647)
Q Consensus 218 g~~tKV--NANIGtS~~~~~ie~EveKl~~A~~~GADtv-MDLSTGg--------di~~~R~~Il~~spvPv-GTVPIYq 285 (647)
++.+++ ..+||.. ..+++.-+..++.|++.|||.| |-+..|. ++.++++.- +...+|+ -.+..+.
T Consensus 57 ~~i~~~~~~~~i~~p--~~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~-~~~g~~~iie~~~~g 133 (235)
T cd00958 57 PLIVKLNGSTSLSPK--DDNDKVLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEA-HKYGLPLIAWMYPRG 133 (235)
T ss_pred cEEEEECCCCCCCCC--CCCchhhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHH-HHcCCCEEEEEeccC
Confidence 444444 4455543 4566666667889999999976 3344443 222222221 1223332 0111110
Q ss_pred HHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEEec
Q 006395 286 ALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHA 321 (647)
Q Consensus 286 A~~k~~g~~~dlt~e~~~d~i~eQaeqGVDf~TIHa 321 (647)
+ .....++.+.+....+.-++.|.||+-+..
T Consensus 134 ----~-~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~ 164 (235)
T cd00958 134 ----P-AVKNEKDPDLIAYAARIGAELGADIVKTKY 164 (235)
T ss_pred ----C-cccCccCHHHHHHHHHHHHHHCCCEEEecC
Confidence 0 011135666666667778899999999853
No 38
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=78.88 E-value=92 Score=33.93 Aligned_cols=95 Identities=17% Similarity=0.263 Sum_probs=54.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhH---HHHHHHHhH
Q 006395 296 NLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHW---DEILDICNQ 372 (647)
Q Consensus 296 dlt~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~F---D~ileI~k~ 372 (647)
-++.+++.+.+..-.+.|+++..||+=+--..... ..+.+-+ .++++++++
T Consensus 146 Gi~~~~~~~~l~~~~~~~l~~~Gih~HiGS~~~~~--------------------------~~~~~a~~~~~~~~~~~~~ 199 (394)
T cd06831 146 GTTLKNCRHLLECAKELDVQIVGVKFHVSSSCKEY--------------------------QTYVHALSDARCVFDMAEE 199 (394)
T ss_pred CCCHHHHHHHHHHHHHCCCeEEEEEEECCCCCCCH--------------------------HHHHHHHHHHHHHHHHHHH
Confidence 45667777777666677999999998543222111 1112222 456777777
Q ss_pred hce---eEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHH--hcCCeEEeeCCC
Q 006395 373 YDV---ALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAW--DKDVQVMNEGPG 423 (647)
Q Consensus 373 YDV---tlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~--e~gVQVMIEGPG 423 (647)
++. .|.+|-|+- + +..|-.++.+.+ .++.++-. ..++++++| ||
T Consensus 200 ~g~~l~~ldiGGGf~-~---~~~~~~~~~~~i--~~~l~~~~~~~~~~~li~E-PG 248 (394)
T cd06831 200 FGFKMNMLDIGGGFT-G---SEIQLEEVNHVI--RPLLDVYFPEGSGIQIIAE-PG 248 (394)
T ss_pred CCCCCCEEEeCCCcC-C---CCCCHHHHHHHH--HHHHHHhcCcCCCCEEEEe-CC
Confidence 754 589999993 3 224444444332 23333322 136888887 55
No 39
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=78.63 E-value=35 Score=32.85 Aligned_cols=118 Identities=11% Similarity=0.036 Sum_probs=65.8
Q ss_pred HHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCC
Q 006395 305 TLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLR 384 (647)
Q Consensus 305 ~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlSLGDGLR 384 (647)
.+++-++.|.||+++|+-... .+-.++++.+++|++-+-++ -+-
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~-----------------------------------~~~~~~i~~~~~~g~~~~~~-~~~ 111 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADD-----------------------------------ATIKGAVKAAKKHGKEVQVD-LIN 111 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCH-----------------------------------HHHHHHHHHHHHcCCEEEEE-ecC
Confidence 355558889999999985211 34467899999998877651 011
Q ss_pred CCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCC--CC-chHHHHHHHHHhcCCCCccccCccccccCCCch
Q 006395 385 PGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIP--MH-KIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYD 461 (647)
Q Consensus 385 PG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVP--l~-~I~~nv~lqk~lc~~APfYvLGPLvTDIApGYD 461 (647)
|. + .-+.++.|.+.|+..+-=.||.-- .. .--..++.-++....-++.+ |=.-..|
T Consensus 112 ~~-----t----------~~~~~~~~~~~g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~~~~~~i~v------~GGI~~~ 170 (206)
T TIGR03128 112 VK-----D----------KVKRAKELKELGADYIGVHTGLDEQAKGQNPFEDLQTILKLVKEARVAV------AGGINLD 170 (206)
T ss_pred CC-----C----------hHHHHHHHHHcCCCEEEEcCCcCcccCCCCCHHHHHHHHHhcCCCcEEE------ECCcCHH
Confidence 11 1 234445667788887766676521 11 01112333333333322222 3333456
Q ss_pred hHHHhHHHHHhhhcccceeeecCc
Q 006395 462 HITSAIGAANIGALGTALLCYVTP 485 (647)
Q Consensus 462 HItsAIGaA~aa~~Gad~LCYVTP 485 (647)
++... ..+|++.+|..+-
T Consensus 171 n~~~~------~~~Ga~~v~vGsa 188 (206)
T TIGR03128 171 TIPDV------IKLGPDIVIVGGA 188 (206)
T ss_pred HHHHH------HHcCCCEEEEeeh
Confidence 66533 3578998887653
No 40
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=78.51 E-value=28 Score=36.11 Aligned_cols=123 Identities=22% Similarity=0.288 Sum_probs=75.3
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCcc--------------ccccHHHHHHHHHc-CC---
Q 006395 294 AENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIV--------------SRGGSIHAKWCLAY-HK--- 355 (647)
Q Consensus 294 ~~dlt~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIV--------------SRGGSi~a~Wml~~-~~--- 355 (647)
+.+-+++...+..++|.++|.|++-|=+++..+. ...|+..+| |.=-..+.+=+.+. ++
T Consensus 19 ~~~~d~~~i~~~A~~~~~~GAdiIDVg~~~~~~e---E~~r~~~~v~~l~~~~~~plsIDT~~~~v~eaaL~~~~G~~iI 95 (261)
T PRK07535 19 IEAKDAAFIQKLALKQAEAGADYLDVNAGTAVEE---EPETMEWLVETVQEVVDVPLCIDSPNPAAIEAGLKVAKGPPLI 95 (261)
T ss_pred HHcCCHHHHHHHHHHHHHCCCCEEEECCCCCchh---HHHHHHHHHHHHHHhCCCCEEEeCCCHHHHHHHHHhCCCCCEE
Confidence 4566899999999999999999999999975322 011222222 22223333333220 11
Q ss_pred --cCchhhhHHHHHHHHhHhceeEec--cC--CCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCC--eEEeeCCCCCCC
Q 006395 356 --ENFAYEHWDEILDICNQYDVALSI--GD--GLRPGSIYDANDTAQFAELLTQGELTRRAWDKDV--QVMNEGPGHIPM 427 (647)
Q Consensus 356 --ENplY~~FD~ileI~k~YDVtlSL--GD--GLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gV--QVMIEGPGHVPl 427 (647)
=|-.-+.++++++++++|++.+-+ -| | -|. ++.+ -+..+-+++++|.++|| .=+|=-||--|+
T Consensus 96 NsIs~~~~~~~~~~~l~~~~g~~vv~m~~~~~g-~P~---t~~~-----~~~~l~~~v~~a~~~GI~~~~IilDPgi~~~ 166 (261)
T PRK07535 96 NSVSAEGEKLEVVLPLVKKYNAPVVALTMDDTG-IPK---DAED-----RLAVAKELVEKADEYGIPPEDIYIDPLVLPL 166 (261)
T ss_pred EeCCCCCccCHHHHHHHHHhCCCEEEEecCCCC-CCC---CHHH-----HHHHHHHHHHHHHHcCCCHhHEEEeCCCCcc
Confidence 111114588999999999876663 32 2 132 1111 15666888999999999 244446887775
Q ss_pred C
Q 006395 428 H 428 (647)
Q Consensus 428 ~ 428 (647)
.
T Consensus 167 ~ 167 (261)
T PRK07535 167 S 167 (261)
T ss_pred c
Confidence 3
No 41
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=77.79 E-value=23 Score=37.61 Aligned_cols=136 Identities=21% Similarity=0.217 Sum_probs=69.7
Q ss_pred EeeccccCCCCCChHHHHHHHHHHHHhCCCEeeecC-------CCC--ChH---HHHHHHHhcCCCccccchhhhHHHHh
Q 006395 223 VNANIGNSAVASSIEEEVYKVQWATMWGADTVMDLS-------TGR--HIH---ETREWILRNSAVPVGTVPIYQALEKV 290 (647)
Q Consensus 223 VNANIGtS~~~~~ie~EveKl~~A~~~GADtvMDLS-------TGg--di~---~~R~~Il~~spvPvGTVPIYqA~~k~ 290 (647)
+.+|+|.........+++.++..-+++.|..| .|. ..+ +++ ++=++|.+..++||. .|-
T Consensus 116 ~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i-~ln~~q~~~~p~g~~~f~~~le~i~~i~~~~~vPVi--------vK~ 186 (333)
T TIGR02151 116 LIANIGAPQLVEGGPEEAQEAIDMIEADALAI-HLNVLQELVQPEGDRNFKGWLEKIAEICSQLSVPVI--------VKE 186 (333)
T ss_pred EEeecCchhhccccHHHHHHHHHHhcCCCEEE-cCcccccccCCCCCcCHHHHHHHHHHHHHhcCCCEE--------EEe
Confidence 45677754443322556666655554444443 442 112 454 455667777778876 121
Q ss_pred cCccCCCCHHHHHHHHHHHHhcCCCEEEEeccc--cccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHH
Q 006395 291 DGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGV--LLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILD 368 (647)
Q Consensus 291 ~g~~~dlt~e~~~d~i~eQaeqGVDf~TIHaGv--~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ile 368 (647)
.| ..++ .+....-.+.|||+++||.+- +...++. -|..... + |++...|-.. -.+.|.+
T Consensus 187 ~g--~g~~----~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~--~r~~~~~-~-~~~~~~~g~~---------t~~~l~~ 247 (333)
T TIGR02151 187 VG--FGIS----KEVAKLLADAGVSAIDVAGAGGTSWAQVEN--YRAKGSN-L-ASFFNDWGIP---------TAASLLE 247 (333)
T ss_pred cC--CCCC----HHHHHHHHHcCCCEEEECCCCCCcccchhh--hcccccc-c-chhhhcccHh---------HHHHHHH
Confidence 12 1233 344555567899999998632 1112221 1211110 0 5555555432 4566777
Q ss_pred HHh-HhceeEeccCCCCCC
Q 006395 369 ICN-QYDVALSIGDGLRPG 386 (647)
Q Consensus 369 I~k-~YDVtlSLGDGLRPG 386 (647)
+.+ ..++.+-.--|+|-|
T Consensus 248 ~~~~~~~ipVIasGGI~~~ 266 (333)
T TIGR02151 248 VRSDAPDAPIIASGGLRTG 266 (333)
T ss_pred HHhcCCCCeEEEECCCCCH
Confidence 765 346666666666544
No 42
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=76.64 E-value=5.1 Score=43.06 Aligned_cols=106 Identities=21% Similarity=0.185 Sum_probs=63.6
Q ss_pred HHHHHHHHhHhcee-EeccCCCCCCCccCCCcHHHHHHHHHHH----------HHHHHHHhcCCeEEe----eCCCCCC-
Q 006395 363 WDEILDICNQYDVA-LSIGDGLRPGSIYDANDTAQFAELLTQG----------ELTRRAWDKDVQVMN----EGPGHIP- 426 (647)
Q Consensus 363 FD~ileI~k~YDVt-lSLGDGLRPG~i~DA~D~AQ~~EL~~LG----------EL~krA~e~gVQVMI----EGPGHVP- 426 (647)
||+.++++.++.|. +|++ +-+|. |+.+|...| ++++++-+.||-+.| |.-||+.
T Consensus 71 ~~~~l~vi~e~~v~~V~~~-~G~P~---------~~~~lk~~Gi~v~~~v~s~~~A~~a~~~GaD~vVaqG~EAGGH~G~ 140 (320)
T cd04743 71 RAAQLAVVRAIKPTFALIA-GGRPD---------QARALEAIGISTYLHVPSPGLLKQFLENGARKFIFEGRECGGHVGP 140 (320)
T ss_pred hHHHHHHHHhcCCcEEEEc-CCChH---------HHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEEecCcCcCCCCC
Confidence 78899999999986 4555 33453 455665444 778999999998777 6679996
Q ss_pred ---CCchHHHHHHHHHhc-----CCCCccccCccccccCCCchh-HHHhHHH-------HHhhhcccceeee
Q 006395 427 ---MHKIPENMQKQLEWC-----NEAPFYTLGPLTTDIAPGYDH-ITSAIGA-------ANIGALGTALLCY 482 (647)
Q Consensus 427 ---l~~I~~nv~lqk~lc-----~~APfYvLGPLvTDIApGYDH-ItsAIGa-------A~aa~~Gad~LCY 482 (647)
+-.+++-++.-+... .+-|.+.-|= |+-|.+= -..+.|+ +...+.|+.|||-
T Consensus 141 ~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGG----I~dgr~~aaalaLGA~~~~~Ga~~GV~mGTrFl~t 208 (320)
T cd04743 141 RSSFVLWESAIDALLAANGPDKAGKIHLLFAGG----IHDERSAAMVSALAAPLAERGAKVGVLMGTAYLFT 208 (320)
T ss_pred CCchhhHHHHHHHHHHhhcccccCCccEEEEcC----CCCHHHHHHHHHcCCcccccccccEEEEccHHhcc
Confidence 222332222211111 1356665554 4444331 1223333 2678889999874
No 43
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=75.50 E-value=44 Score=35.07 Aligned_cols=115 Identities=11% Similarity=0.095 Sum_probs=78.8
Q ss_pred HHHHHhCCCEeeecCC-CCChHHHHHHHH--hcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEEe
Q 006395 244 QWATMWGADTVMDLST-GRHIHETREWIL--RNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIH 320 (647)
Q Consensus 244 ~~A~~~GADtvMDLST-Ggdi~~~R~~Il--~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGVDf~TIH 320 (647)
..-.++|..+|..|.. .-|..++.+.=| ..-|+|-|++|--+.+ +.|++.|+++.++|= -+.||
T Consensus 110 ~eLk~~gV~~lVrlcE~~Yd~~~~~~~GI~~~~lpipDg~aPs~~~i------------~~~l~~i~~~l~~g~-~VaVH 176 (241)
T PTZ00393 110 KEMKNYNVTDLVRTCERTYNDGEITSAGINVHELIFPDGDAPTVDIV------------SNWLTIVNNVIKNNR-AVAVH 176 (241)
T ss_pred HHHHHcCCCEEEECCCCCCCHHHHHHcCCeEEEeecCCCCCCCHHHH------------HHHHHHHHHHHhcCC-eEEEE
Confidence 3345789999998844 224455554434 3457788888864433 456666766666664 58899
Q ss_pred ccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHH
Q 006395 321 AGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAEL 400 (647)
Q Consensus 321 aGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL 400 (647)
|- +| +.|-|.++|.|++.++- .+++.++..|+ .|||+| + ..|++=|
T Consensus 177 C~---------AG-----lGRTGtl~AayLI~~Gm------speeAI~~VR~----------~RPgAI---n-~~Q~~fL 222 (241)
T PTZ00393 177 CV---------AG-----LGRAPVLASIVLIEFGM------DPIDAIVFIRD----------RRKGAI---N-KRQLQFL 222 (241)
T ss_pred CC---------CC-----CCHHHHHHHHHHHHcCC------CHHHHHHHHHH----------HCCCCC---C-HHHHHHH
Confidence 92 32 47899999999997542 57888888886 699998 3 4687766
Q ss_pred HHHHH
Q 006395 401 LTQGE 405 (647)
Q Consensus 401 ~~LGE 405 (647)
....+
T Consensus 223 ~~y~~ 227 (241)
T PTZ00393 223 KAYKK 227 (241)
T ss_pred HHHHH
Confidence 65544
No 44
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=75.13 E-value=62 Score=33.34 Aligned_cols=181 Identities=15% Similarity=0.131 Sum_probs=98.2
Q ss_pred ceeEeeccccCCCCCChHHHHHHHHHHHHhCCCE----eeecCCCCChH---HHHHHHHhcCCCccccchhhhHHHHhcC
Q 006395 220 LVKVNANIGNSAVASSIEEEVYKVQWATMWGADT----VMDLSTGRHIH---ETREWILRNSAVPVGTVPIYQALEKVDG 292 (647)
Q Consensus 220 ~tKVNANIGtS~~~~~ie~EveKl~~A~~~GADt----vMDLSTGgdi~---~~R~~Il~~spvPvGTVPIYqA~~k~~g 292 (647)
++||-.+| -|++...+++|++++.. |+|. |||=.--.||. .+=++|-+.+.+|+ + ++=
T Consensus 2 ~~~I~pSi-l~ad~~~l~~el~~l~~----g~d~lH~DiMDG~FVPN~tfg~~~i~~ir~~t~~~~------D----vHL 66 (229)
T PRK09722 2 RMKISPSL-MCMDLLKFKEQIEFLNS----KADYFHIDIMDGHFVPNLTLSPFFVSQVKKLASKPL------D----VHL 66 (229)
T ss_pred CceEEeeh-hhcCHHHHHHHHHHHHh----CCCEEEEecccCccCCCcccCHHHHHHHHhcCCCCe------E----EEE
Confidence 45677777 56777889999988743 8998 68733322221 12222222233321 1 000
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCCEEEEeccccccccc----c--ccCcccCccccccHHHHHHHHHcCCcCchhhhHHHH
Q 006395 293 IAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIP----L--TAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEI 366 (647)
Q Consensus 293 ~~~dlt~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~----~--~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~i 366 (647)
-+ -+++. .|++-++.|+|++|||+--+..++. . ..+--.||+ =||- |.++.|
T Consensus 67 Mv--~~P~~---~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGla----------------lnP~-T~~~~l 124 (229)
T PRK09722 67 MV--TDPQD---YIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLV----------------LNPE-TPVESI 124 (229)
T ss_pred Ee--cCHHH---HHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEE----------------eCCC-CCHHHH
Confidence 00 12444 4555577799999999974322221 1 122223332 2674 888999
Q ss_pred HHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcC--CeEEeeCCCCCCCCchHHHHHHHHHhcCCC
Q 006395 367 LDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKD--VQVMNEGPGHIPMHKIPENMQKQLEWCNEA 444 (647)
Q Consensus 367 leI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~g--VQVMIEGPGHVPl~~I~~nv~lqk~lc~~A 444 (647)
.+++..-|..|=+. .-||--.=.-....+.-+. +|-+.-.++| +.+.|-| =|- .+|+..-.+ .||
T Consensus 125 ~~~l~~vD~VLvMs--V~PGf~GQ~fi~~~l~KI~---~lr~~~~~~~~~~~IeVDG--GI~----~~~i~~~~~--aGa 191 (229)
T PRK09722 125 KYYIHLLDKITVMT--VDPGFAGQPFIPEMLDKIA---ELKALRERNGLEYLIEVDG--SCN----QKTYEKLME--AGA 191 (229)
T ss_pred HHHHHhcCEEEEEE--EcCCCcchhccHHHHHHHH---HHHHHHHhcCCCeEEEEEC--CCC----HHHHHHHHH--cCC
Confidence 99999999777653 3466544333333333333 3333333455 5566665 333 345544333 457
Q ss_pred CccccC
Q 006395 445 PFYTLG 450 (647)
Q Consensus 445 PfYvLG 450 (647)
=.+|+|
T Consensus 192 d~~V~G 197 (229)
T PRK09722 192 DVFIVG 197 (229)
T ss_pred CEEEEC
Confidence 888888
No 45
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=74.94 E-value=64 Score=36.02 Aligned_cols=80 Identities=19% Similarity=0.220 Sum_probs=47.0
Q ss_pred eEeeccccCCCCCChHHHHHHHHHHHHhCCCEee-ecCCCC--ChHHHHHHHHhcC---CCccccchhhhHHHHhcCccC
Q 006395 222 KVNANIGNSAVASSIEEEVYKVQWATMWGADTVM-DLSTGR--HIHETREWILRNS---AVPVGTVPIYQALEKVDGIAE 295 (647)
Q Consensus 222 KVNANIGtS~~~~~ie~EveKl~~A~~~GADtvM-DLSTGg--di~~~R~~Il~~s---pvPvGTVPIYqA~~k~~g~~~ 295 (647)
-|-|.+|++. +-++.++..+++|+|-|- |.+-|. .+.++=++|-+.. +|-+|-|--++....+
T Consensus 143 ~v~aavg~~~------~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l----- 211 (404)
T PRK06843 143 RVGAAVSIDI------DTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDL----- 211 (404)
T ss_pred EEEEEEeCCH------HHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHH-----
Confidence 3555666532 245667777789999975 777663 3333444444333 2445666555554433
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecccccccc
Q 006395 296 NLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYI 328 (647)
Q Consensus 296 dlt~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~ 328 (647)
.+.|+|++-+ |++...+
T Consensus 212 --------------~~aGaD~I~v--G~g~Gs~ 228 (404)
T PRK06843 212 --------------ISVGADCLKV--GIGPGSI 228 (404)
T ss_pred --------------HHcCCCEEEE--CCCCCcC
Confidence 4569999874 6655443
No 46
>PRK09875 putative hydrolase; Provisional
Probab=74.72 E-value=1.1e+02 Score=32.43 Aligned_cols=88 Identities=17% Similarity=0.241 Sum_probs=59.6
Q ss_pred CChHHHHHHHHHHHHhCCCEeeecCC---CCChHHHHHHHHhcCCCccc-cchhhhHHHHhcCccCCCCHHHHHHHHHHH
Q 006395 234 SSIEEEVYKVQWATMWGADTVMDLST---GRHIHETREWILRNSAVPVG-TVPIYQALEKVDGIAENLSWEVFRDTLIEQ 309 (647)
Q Consensus 234 ~~ie~EveKl~~A~~~GADtvMDLST---Ggdi~~~R~~Il~~spvPvG-TVPIYqA~~k~~g~~~dlt~e~~~d~i~eQ 309 (647)
.+++.=++.++.-.++|-.||.|.++ |.|...+|+-- +.|.|.|= +-=.|..-. .-..+..++.|+|-+.+.+.
T Consensus 31 ~~~~~~~~el~~~~~~Gg~tiVd~T~~g~GRd~~~l~~is-~~tgv~Iv~~TG~y~~~~-~p~~~~~~~~e~la~~~i~e 108 (292)
T PRK09875 31 DQYAFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVM-RETGINVVACTGYYQDAF-FPEHVATRSVQELAQEMVDE 108 (292)
T ss_pred ccHHHHHHHHHHHHHhCCCeEEecCCCccCcCHHHHHHHH-HHhCCcEEEcCcCCCCcc-CCHHHhcCCHHHHHHHHHHH
Confidence 45555566666677889999999886 67888877644 44666541 112222100 01234578899999999999
Q ss_pred HhcCCCEEEEeccc
Q 006395 310 AEQGVDYFTIHAGV 323 (647)
Q Consensus 310 aeqGVDf~TIHaGv 323 (647)
.++|+|---|-|||
T Consensus 109 i~~Gi~gt~ikaGv 122 (292)
T PRK09875 109 IEQGIDGTELKAGI 122 (292)
T ss_pred HHHhhccCCCcccE
Confidence 99999977777776
No 47
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=74.50 E-value=81 Score=30.05 Aligned_cols=181 Identities=15% Similarity=0.136 Sum_probs=88.2
Q ss_pred CCCCChHHHHHHHHHHHHhCCCEe----eecCCCCChH---HHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHH
Q 006395 231 AVASSIEEEVYKVQWATMWGADTV----MDLSTGRHIH---ETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFR 303 (647)
Q Consensus 231 ~~~~~ie~EveKl~~A~~~GADtv----MDLSTGgdi~---~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~ 303 (647)
-.+.|++.=.+.++.+.++|||.| ||-..-.++. +.-++|-+..+.|+- .++.-.+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~---------------v~lm~~~~~ 69 (210)
T TIGR01163 5 ILSADFARLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPID---------------VHLMVENPD 69 (210)
T ss_pred hhcCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEE---------------EEeeeCCHH
Confidence 345566666677888899999995 4433322221 122233333333321 111111122
Q ss_pred HHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCc-----CchhhhHHHHHHHHhHhceeEe
Q 006395 304 DTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKE-----NFAYEHWDEILDICNQYDVALS 378 (647)
Q Consensus 304 d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~E-----NplY~~FD~ileI~k~YDVtlS 378 (647)
+.++.-++.|+|.+++|.+..-...... +.+..++.+ +| ++..+++.++...-|..+
T Consensus 70 ~~~~~~~~~gadgv~vh~~~~~~~~~~~----------------~~~~~~g~~~~~~~~~-~t~~e~~~~~~~~~d~i~- 131 (210)
T TIGR01163 70 RYIEDFAEAGADIITVHPEASEHIHRLL----------------QLIKDLGAKAGIVLNP-ATPLEFLEYVLPDVDLVL- 131 (210)
T ss_pred HHHHHHHHcCCCEEEEccCCchhHHHHH----------------HHHHHcCCcEEEEECC-CCCHHHHHHHHhhCCEEE-
Confidence 4466667999999999997542221110 111111111 11 233455555544445533
Q ss_pred ccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCcccc
Q 006395 379 IGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTT 454 (647)
Q Consensus 379 LGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~nv~lqk~lc~~APfYvLGPLvT 454 (647)
+ ++..||-..+..+..-+..+..+-+++... ..++.+++=| | + + .+|+..-.+ .++=.++.|--++
T Consensus 132 ~-~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~-~~~~~i~v~G-G-I--~--~env~~l~~--~gad~iivgsai~ 197 (210)
T TIGR01163 132 L-MSVNPGFGGQKFIPDTLEKIREVRKMIDEN-GLSILIEVDG-G-V--N--DDNARELAE--AGADILVAGSAIF 197 (210)
T ss_pred E-EEEcCCCCcccccHHHHHHHHHHHHHHHhc-CCCceEEEEC-C-c--C--HHHHHHHHH--cCCCEEEEChHHh
Confidence 3 245566555555555555554455554321 2235666666 4 3 3 256654333 3456676665444
No 48
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=73.86 E-value=5.6 Score=40.02 Aligned_cols=91 Identities=23% Similarity=0.170 Sum_probs=51.4
Q ss_pred CCceeEeeccccCCCCCChHHHHHHHHHHHHhCCCE----eeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhc-C
Q 006395 218 NFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADT----VMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVD-G 292 (647)
Q Consensus 218 g~~tKVNANIGtS~~~~~ie~EveKl~~A~~~GADt----vMDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~-g 292 (647)
.+.++|..+| -+.+...+++|+++++ ++|+|. |||-.--.|+. .| ..+.+++.+.. .
T Consensus 4 ~~~~~i~pSi-~~~d~~~l~~~~~~l~---~~~~~~~H~DimDg~fvpn~~-------------~G-~~~v~~lr~~~~~ 65 (228)
T PTZ00170 4 PLKAIIAPSI-LAADFSKLADEAQDVL---SGGADWLHVDVMDGHFVPNLS-------------FG-PPVVKSLRKHLPN 65 (228)
T ss_pred CCCCEEehhH-hhcCHHHHHHHHHHHH---HcCCCEEEEecccCccCCCcC-------------cC-HHHHHHHHhcCCC
Confidence 4566777777 4555667888887764 678998 67743333321 12 12223333221 1
Q ss_pred cc--CCCCHHHHHHHHHHHHhcCCCEEEEecccccc
Q 006395 293 IA--ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLR 326 (647)
Q Consensus 293 ~~--~dlt~e~~~d~i~eQaeqGVDf~TIHaGv~~~ 326 (647)
.. .+|=.+.-...++.-++.|+|++|||+--...
T Consensus 66 ~~lDvHLm~~~p~~~i~~~~~~Gad~itvH~ea~~~ 101 (228)
T PTZ00170 66 TFLDCHLMVSNPEKWVDDFAKAGASQFTFHIEATED 101 (228)
T ss_pred CCEEEEECCCCHHHHHHHHHHcCCCEEEEeccCCch
Confidence 10 11112334455677778899999999875443
No 49
>PRK09061 D-glutamate deacylase; Validated
Probab=73.84 E-value=90 Score=35.08 Aligned_cols=110 Identities=17% Similarity=0.093 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccC
Q 006395 302 FRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGD 381 (647)
Q Consensus 302 ~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlSLGD 381 (647)
+.+.+++-.++|++.+..-. .+.+ .---.+++++++++++||..+.+
T Consensus 171 m~~ll~~al~~Ga~gis~~~----~y~p---------------------------~~~~~eL~~l~~~A~~~g~~v~~-- 217 (509)
T PRK09061 171 ILELLEQGLDEGALGIGIGA----GYAP---------------------------GTGHKEYLELARLAARAGVPTYT-- 217 (509)
T ss_pred HHHHHHHHHHCCCCEEecCC----ccCC---------------------------CCCHHHHHHHHHHHHHcCCEEEE--
Confidence 66667777789999987621 1111 01234688999999999988854
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCC------CchHHHHHHHHHhcCCCCccccCccccc
Q 006395 382 GLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPM------HKIPENMQKQLEWCNEAPFYTLGPLTTD 455 (647)
Q Consensus 382 GLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl------~~I~~nv~lqk~lc~~APfYvLGPLvTD 455 (647)
=+|-..+.| ...|+..+-++.+.|++.|+.|-|= |+-- .+.-+-++.-++.+ -++++|
T Consensus 218 H~e~~~~~~-----~~~e~~av~~~i~lA~~~G~rv~Is---Hlss~g~~~~~~~le~I~~Ar~~G--------i~Vt~e 281 (509)
T PRK09061 218 HVRYLSNVD-----PRSSVDAYQELIAAAAETGAHMHIC---HVNSTSLRDIDRCLALVEKAQAQG--------LDVTTE 281 (509)
T ss_pred EecCcccCC-----chhHHHHHHHHHHHHHHhCCCEEEE---eeccCCcccHHHHHHHHHHHHHcC--------CcEEEE
Confidence 111111011 3567888888889999999887764 6544 33333444444421 245566
Q ss_pred cCCCc
Q 006395 456 IAPGY 460 (647)
Q Consensus 456 IApGY 460 (647)
+.|.|
T Consensus 282 ~~P~~ 286 (509)
T PRK09061 282 AYPYG 286 (509)
T ss_pred ecCcc
Confidence 66665
No 50
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=73.72 E-value=64 Score=34.28 Aligned_cols=137 Identities=22% Similarity=0.250 Sum_probs=69.4
Q ss_pred EeeccccCCCCCChHHHHHHHHHHHHhCCCEe-eecCC---------CCChH---HHHHHHHhcCCCccccchhhhHHHH
Q 006395 223 VNANIGNSAVASSIEEEVYKVQWATMWGADTV-MDLST---------GRHIH---ETREWILRNSAVPVGTVPIYQALEK 289 (647)
Q Consensus 223 VNANIGtS~~~~~ie~EveKl~~A~~~GADtv-MDLST---------Ggdi~---~~R~~Il~~spvPvGTVPIYqA~~k 289 (647)
+.+|+|-......-.+++.++...+ +||.+ ..|.. ..|.+ +.=++|+++.++||. .|
T Consensus 115 ~~~Nl~~~~~~~~~~~~~~~~i~~~--~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~~vPVi--------vK 184 (326)
T cd02811 115 LIANLGAVQLNGYGVEEARRAVEMI--EADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKALSVPVI--------VK 184 (326)
T ss_pred EEeecCccccCCCCHHHHHHHHHhc--CCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhcCCCEE--------EE
Confidence 4557765543222233444444433 55555 24422 22454 445667777788776 12
Q ss_pred hcCccCCCCHHHHHHHHHHHHhcCCCEEEEecc--ccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHH
Q 006395 290 VDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAG--VLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEIL 367 (647)
Q Consensus 290 ~~g~~~dlt~e~~~d~i~eQaeqGVDf~TIHaG--v~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~il 367 (647)
..| ..+|. +....-.+.|||++.++.. -+.-.++. .|-... -.| ......+.-+.-.+.|.
T Consensus 185 ~~g--~g~s~----~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~--~r~~~~--------~~~-~~~~~~~~g~~t~~~l~ 247 (326)
T cd02811 185 EVG--FGISR----ETAKRLADAGVKAIDVAGAGGTSWARVEN--YRAKDS--------DQR-LAEYFADWGIPTAASLL 247 (326)
T ss_pred ecC--CCCCH----HHHHHHHHcCCCEEEECCCCCCccccccc--cccccc--------ccc-cccccccccccHHHHHH
Confidence 112 23554 4444556789999999752 22222221 111110 012 11111222334467888
Q ss_pred HHHhHh-ceeEeccCCCCCC
Q 006395 368 DICNQY-DVALSIGDGLRPG 386 (647)
Q Consensus 368 eI~k~Y-DVtlSLGDGLRPG 386 (647)
++.+.. ++.+-.-=|+|-|
T Consensus 248 ~~~~~~~~ipIiasGGIr~~ 267 (326)
T cd02811 248 EVRSALPDLPLIASGGIRNG 267 (326)
T ss_pred HHHHHcCCCcEEEECCCCCH
Confidence 888777 7888887777755
No 51
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=73.58 E-value=8.5 Score=33.20 Aligned_cols=92 Identities=13% Similarity=0.194 Sum_probs=68.5
Q ss_pred CcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHh
Q 006395 333 KRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWD 412 (647)
Q Consensus 333 ~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e 412 (647)
-++.||+++...-...+....+-. .|+.++++++-- +.|+.+--... ..-.++++.|-+
T Consensus 26 ~~v~~v~d~~~~~~~~~~~~~~~~--~~~~~~~ll~~~-~~D~V~I~tp~------------------~~h~~~~~~~l~ 84 (120)
T PF01408_consen 26 FEVVAVCDPDPERAEAFAEKYGIP--VYTDLEELLADE-DVDAVIIATPP------------------SSHAEIAKKALE 84 (120)
T ss_dssp EEEEEEECSSHHHHHHHHHHTTSE--EESSHHHHHHHT-TESEEEEESSG------------------GGHHHHHHHHHH
T ss_pred cEEEEEEeCCHHHHHHHHHHhccc--chhHHHHHHHhh-cCCEEEEecCC------------------cchHHHHHHHHH
Confidence 388999999988877775555444 999999888755 57766533221 224578889999
Q ss_pred cCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCcc
Q 006395 413 KDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFY 447 (647)
Q Consensus 413 ~gVQVMIEGPGHVPl~~I~~nv~lqk~lc~~APfY 447 (647)
+|+-|++|-|--.-+.+.++=+++.++ ++.+++
T Consensus 85 ~g~~v~~EKP~~~~~~~~~~l~~~a~~--~~~~~~ 117 (120)
T PF01408_consen 85 AGKHVLVEKPLALTLEEAEELVEAAKE--KGVKVM 117 (120)
T ss_dssp TTSEEEEESSSSSSHHHHHHHHHHHHH--HTSCEE
T ss_pred cCCEEEEEcCCcCCHHHHHHHHHHHHH--hCCEEE
Confidence 999999999998888888888877776 444443
No 52
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=73.50 E-value=61 Score=33.46 Aligned_cols=156 Identities=17% Similarity=0.208 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHH-HhCCCEeeecCCCCChHHHHHHHHhcCCCcccc--chhhhHHHHhcCccCCCCHHHHHHHHHH----
Q 006395 236 IEEEVYKVQWAT-MWGADTVMDLSTGRHIHETREWILRNSAVPVGT--VPIYQALEKVDGIAENLSWEVFRDTLIE---- 308 (647)
Q Consensus 236 ie~EveKl~~A~-~~GADtvMDLSTGgdi~~~R~~Il~~spvPvGT--VPIYqA~~k~~g~~~dlt~e~~~d~i~e---- 308 (647)
--+.++|+..++ +.|+-.++-|.-+|-...... .. ..|++. +|.+ .....+..||.+++-++|+.
T Consensus 75 ~~~~~~~~~~~vh~~g~~~~~Ql~h~G~~~~~~~--~~--~~~~~~s~~~~~----~~~~~~~~mt~~ei~~~i~~~~~a 146 (327)
T cd02803 75 QIPGLRKLTEAVHAHGAKIFAQLAHAGRQAQPNL--TG--GPPPAPSAIPSP----GGGEPPREMTKEEIEQIIEDFAAA 146 (327)
T ss_pred HHHHHHHHHHHHHhCCCHhhHHhhCCCcCCCCcC--CC--CCccCCCCCCCC----CCCCCCCcCCHHHHHHHHHHHHHH
Confidence 345566665555 457777777776653211000 00 011111 2211 11345678888887776653
Q ss_pred ---HHhcCCCEEEEecc---ccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHh-Hhce--eEec
Q 006395 309 ---QAEQGVDYFTIHAG---VLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICN-QYDV--ALSI 379 (647)
Q Consensus 309 ---QaeqGVDf~TIHaG---v~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k-~YDV--tlSL 379 (647)
-.+.|.|.+=||+| +..+.+.-..++.+. .-|||+.-.+ .++.+-.+.|-+.+- .+.| -+|.
T Consensus 147 A~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d--~yGgs~enr~-------r~~~eii~avr~~~g~d~~i~vris~ 217 (327)
T cd02803 147 ARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTD--EYGGSLENRA-------RFLLEIVAAVREAVGPDFPVGVRLSA 217 (327)
T ss_pred HHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCc--ccCCCHHHHH-------HHHHHHHHHHHHHcCCCceEEEEech
Confidence 34579999999997 333333322233343 4689975433 345555555555441 1223 2354
Q ss_pred cCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEe
Q 006395 380 GDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMN 419 (647)
Q Consensus 380 GDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMI 419 (647)
+|....| .+. ...-+|+++..+.|+..+.
T Consensus 218 ~~~~~~g-----~~~------~e~~~la~~l~~~G~d~i~ 246 (327)
T cd02803 218 DDFVPGG-----LTL------EEAIEIAKALEEAGVDALH 246 (327)
T ss_pred hccCCCC-----CCH------HHHHHHHHHHHHcCCCEEE
Confidence 4444222 222 2335667777788887664
No 53
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=73.50 E-value=1.3e+02 Score=32.00 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=20.3
Q ss_pred CChHHHHHHHHHHHHhCCCEeeecC
Q 006395 234 SSIEEEVYKVQWATMWGADTVMDLS 258 (647)
Q Consensus 234 ~~ie~EveKl~~A~~~GADtvMDLS 258 (647)
.+++.=++++..-++.||| |.|+-
T Consensus 35 ~~~~~a~~~a~~~~~~GAd-IIDIG 58 (282)
T PRK11613 35 NSLIDAVKHANLMINAGAT-IIDVG 58 (282)
T ss_pred CCHHHHHHHHHHHHHCCCc-EEEEC
Confidence 4789999999999999998 55874
No 54
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=73.49 E-value=35 Score=36.72 Aligned_cols=169 Identities=20% Similarity=0.200 Sum_probs=86.4
Q ss_pred CCCHHHHHHHHHcCC------------CHHHHHHHHhcceEEEecCCCCCCCCceEeecCCceeEeeccccCCCCCChHH
Q 006395 171 VITEEMLYCATREKL------------DPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEE 238 (647)
Q Consensus 171 iIT~EMe~VA~~E~i------------~pE~vR~~VA~GraVIPaN~nh~~~~p~~IG~g~~tKVNANIGtS~~~~~ie~ 238 (647)
.|.+++..+|.+.|+ +|| +++.+..=|-.-| ..| +.+|||-......-.+
T Consensus 77 ~in~~La~~a~~~G~~~~~Gs~~~~~~~~~-~~~~~~~vr~~~p-------~~p----------~~aNl~~~~~~~~~~~ 138 (352)
T PRK05437 77 EINRKLAEAAEELGIAMGVGSQRAALKDPE-LADSFSVVRKVAP-------DGL----------LFANLGAVQLYGYGVE 138 (352)
T ss_pred HHHHHHHHHHHHcCCCeEecccHhhccChh-hHHHHHHHHHHCC-------Cce----------EEeecCccccCCCCHH
Confidence 345777888888872 566 5555443221111 112 4457776554322234
Q ss_pred HHHHHHHHHHhCCCEe-eecCC-------CC--ChH---HHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHH
Q 006395 239 EVYKVQWATMWGADTV-MDLST-------GR--HIH---ETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDT 305 (647)
Q Consensus 239 EveKl~~A~~~GADtv-MDLST-------Gg--di~---~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~ 305 (647)
++.++...+ +||.+ ..|.. ++ |.+ +.=++|.+..++||. .|..| ..++. +.
T Consensus 139 ~~~~~~~~~--~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPVi--------vK~~g--~g~s~----~~ 202 (352)
T PRK05437 139 EAQRAVEMI--EADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPVI--------VKEVG--FGISK----ET 202 (352)
T ss_pred HHHHHHHhc--CCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCCEE--------EEeCC--CCCcH----HH
Confidence 444443333 56665 34422 22 444 556677777778876 12112 23553 44
Q ss_pred HHHHHhcCCCEEEEecc--ccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHh-ceeEeccCC
Q 006395 306 LIEQAEQGVDYFTIHAG--VLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQY-DVALSIGDG 382 (647)
Q Consensus 306 i~eQaeqGVDf~TIHaG--v~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~Y-DVtlSLGDG 382 (647)
...-.+.|||+++|+.. -+...++. .|-... +++ ....+.-+.-++.|.++.+.. ++.+-.-=|
T Consensus 203 a~~l~~~Gvd~I~Vsg~GGt~~~~ie~--~R~~~~---------~~~--~~~~~~g~pt~~~l~~i~~~~~~ipvia~GG 269 (352)
T PRK05437 203 AKRLADAGVKAIDVAGAGGTSWAAIEN--YRARDD---------RLA--SYFADWGIPTAQSLLEARSLLPDLPIIASGG 269 (352)
T ss_pred HHHHHHcCCCEEEECCCCCCCccchhh--hhhhcc---------ccc--cccccccCCHHHHHHHHHHhcCCCeEEEECC
Confidence 44445679999999763 11111221 111100 000 112233345677888888874 888877667
Q ss_pred CCCC
Q 006395 383 LRPG 386 (647)
Q Consensus 383 LRPG 386 (647)
+|-|
T Consensus 270 I~~~ 273 (352)
T PRK05437 270 IRNG 273 (352)
T ss_pred CCCH
Confidence 7755
No 55
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=73.27 E-value=19 Score=36.80 Aligned_cols=83 Identities=20% Similarity=0.261 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHh-cee
Q 006395 298 SWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQY-DVA 376 (647)
Q Consensus 298 t~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~Y-DVt 376 (647)
+.++|.+..+.-.+.|+|++.||++- |...+ ||.+++ .+| +...+|++-+++. |+.
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~c-----P~~~~-------~g~~~~---------~~~--~~~~eiv~~vr~~~~~P 156 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISC-----PNVKG-------GGMAFG---------TDP--EAVAEIVKAVKKATDVP 156 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCC-----CCCCC-------Cccccc---------CCH--HHHHHHHHHHHhccCCC
Confidence 56888888887777799999999873 11111 233333 233 4556677777776 777
Q ss_pred EeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEE
Q 006395 377 LSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVM 418 (647)
Q Consensus 377 lSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVM 418 (647)
+++- |+|.. . ..-++++++.++|++.+
T Consensus 157 v~vK--l~~~~----------~---~~~~~a~~~~~~G~d~i 183 (296)
T cd04740 157 VIVK--LTPNV----------T---DIVEIARAAEEAGADGL 183 (296)
T ss_pred EEEE--eCCCc----------h---hHHHHHHHHHHcCCCEE
Confidence 7755 55531 1 35677888999999854
No 56
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=72.44 E-value=30 Score=33.87 Aligned_cols=158 Identities=17% Similarity=0.236 Sum_probs=95.5
Q ss_pred HHHHHHHHHhCCCEeeecCCCCC-------hHHHHHHHHhcCCCcccc-chhhhH-HHHhcCccCCCCHHHHHHHHHHHH
Q 006395 240 VYKVQWATMWGADTVMDLSTGRH-------IHETREWILRNSAVPVGT-VPIYQA-LEKVDGIAENLSWEVFRDTLIEQA 310 (647)
Q Consensus 240 veKl~~A~~~GADtvMDLSTGgd-------i~~~R~~Il~~spvPvGT-VPIYqA-~~k~~g~~~dlt~e~~~d~i~eQa 310 (647)
-+.++++.++| -.-+.|+.++. +.++++.+ +...+.+.. .|.+.. +... -...+-..+.+.++++--.
T Consensus 18 ~~~l~~~~~~G-~~gvEi~~~~~~~~~~~~~~~l~~~l-~~~gl~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~a~ 94 (274)
T COG1082 18 EEILRKAAELG-FDGVELSPGDLFPADYKELAELKELL-ADYGLEITSLAPFSNNLLSPD-EEEREEALEELKRAIELAK 94 (274)
T ss_pred HHHHHHHHHhC-CCeEecCCcccCCchhhhHHHHHHHH-HHcCcEEEeecccCCCcCCCc-hhhHHHHHHHHHHHHHHHH
Confidence 35678888999 55567776333 35555544 445555554 666652 2111 0001234677888888889
Q ss_pred hcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccC
Q 006395 311 EQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYD 390 (647)
Q Consensus 311 eqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~D 390 (647)
+-|++++++|+|.....-... +.-..- .. .++.+.++++++++++|.|.+..-.=||++..
T Consensus 95 ~lg~~~vv~~~g~~~~~~~~~--------~~~~~~-~~----------~~~~l~~l~~~a~~~~i~l~~e~~~~~~~~~~ 155 (274)
T COG1082 95 ELGAKVVVVHPGLGAGADDPD--------SPEEAR-ER----------WAEALEELAEIAEELGIGLALENHHHPGNVVE 155 (274)
T ss_pred HcCCCeEEeecccCCcCCCCC--------CCcccH-HH----------HHHHHHHHHHHHHHhCCceEEeecCCccceee
Confidence 999999999998654332211 111000 22 36789999999999999999998555666544
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCC
Q 006395 391 ANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMH 428 (647)
Q Consensus 391 A~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~ 428 (647)
.. +|..+ +.+.....+|.+++- +||.-+.
T Consensus 156 ~~--~~~~~------~~~~~~~~~v~~~lD-~~H~~~~ 184 (274)
T COG1082 156 TG--ADALD------LLREVDSPNVGLLLD-TGHAFFA 184 (274)
T ss_pred cC--HHHHH------HHHhcCCCceEEEEe-cCchhhc
Confidence 43 22222 223333346666664 8898776
No 57
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=72.37 E-value=64 Score=32.70 Aligned_cols=176 Identities=16% Similarity=0.135 Sum_probs=93.8
Q ss_pred CCCCCChHHHHHHHHHHHHhCCCE----eeecCCCCChH---HHHHHHHhc-CCCccccchhhhHHHHhcCccCCCCHHH
Q 006395 230 SAVASSIEEEVYKVQWATMWGADT----VMDLSTGRHIH---ETREWILRN-SAVPVGTVPIYQALEKVDGIAENLSWEV 301 (647)
Q Consensus 230 S~~~~~ie~EveKl~~A~~~GADt----vMDLSTGgdi~---~~R~~Il~~-spvPvGTVPIYqA~~k~~g~~~dlt~e~ 301 (647)
|++...+++|++++. ++|+|. |||=.--.||. .+=++|-+. +.+|+ ++-=|. +.
T Consensus 8 ~ad~~~l~~~i~~l~---~~g~~~lH~DvmDG~Fvpn~tfg~~~i~~i~~~~~~~~~--------------dvHLMv-~~ 69 (220)
T PRK08883 8 SADFARLGEDVEKVL---AAGADVVHFDVMDNHYVPNLTFGAPICKALRDYGITAPI--------------DVHLMV-KP 69 (220)
T ss_pred hcCHHHHHHHHHHHH---HcCCCEEEEecccCcccCccccCHHHHHHHHHhCCCCCE--------------EEEecc-CC
Confidence 455566778887765 578998 67743333321 122222222 22321 111111 22
Q ss_pred HHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCc-----CchhhhHHHHHHHHhHhcee
Q 006395 302 FRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKE-----NFAYEHWDEILDICNQYDVA 376 (647)
Q Consensus 302 ~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~E-----NplY~~FD~ileI~k~YDVt 376 (647)
-.+.|+.-++.|+|++|||+--+.. +.. +..|+..++.. || .|.++.|..++..-|..
T Consensus 70 p~~~i~~~~~~gad~i~~H~Ea~~~-~~~---------------~l~~ik~~g~k~GlalnP-~Tp~~~i~~~l~~~D~v 132 (220)
T PRK08883 70 VDRIIPDFAKAGASMITFHVEASEH-VDR---------------TLQLIKEHGCQAGVVLNP-ATPLHHLEYIMDKVDLI 132 (220)
T ss_pred HHHHHHHHHHhCCCEEEEcccCccc-HHH---------------HHHHHHHcCCcEEEEeCC-CCCHHHHHHHHHhCCeE
Confidence 3345566678999999999975421 111 12344444433 66 37888888999999988
Q ss_pred EeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCc
Q 006395 377 LSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGP 451 (647)
Q Consensus 377 lSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~nv~lqk~lc~~APfYvLGP 451 (647)
|=+ +.-||--.=.--...+. .+.+|.+.-.++|..+-|+-=|-+- .+|+..-.+ .||=.++.|-
T Consensus 133 lvM--tV~PGfgGq~fi~~~le---kI~~l~~~~~~~~~~~~I~vdGGI~----~eni~~l~~--aGAd~vVvGS 196 (220)
T PRK08883 133 LLM--SVNPGFGGQSFIPHTLD---KLRAVRKMIDESGRDIRLEIDGGVK----VDNIREIAE--AGADMFVAGS 196 (220)
T ss_pred EEE--EecCCCCCceecHhHHH---HHHHHHHHHHhcCCCeeEEEECCCC----HHHHHHHHH--cCCCEEEEeH
Confidence 877 57777654333333333 3444444444455333333344443 445554333 4566666663
No 58
>TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM. This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs.
Probab=71.87 E-value=13 Score=39.90 Aligned_cols=86 Identities=17% Similarity=0.194 Sum_probs=57.2
Q ss_pred hhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHH----------HHHHHHHhcCCeEEeeCCCCCCCC
Q 006395 359 AYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQG----------ELTRRAWDKDVQVMNEGPGHIPMH 428 (647)
Q Consensus 359 lY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LG----------EL~krA~e~gVQVMIEGPGHVPl~ 428 (647)
+.+.+.+++++|+++++.+ ..+|+.....+.+....| |.++.+.++|+.|+.=-|. |+.
T Consensus 207 ~~e~i~~~v~~A~~~G~~v---------~sH~~~~~e~i~~a~~~Gv~~~E~~~t~e~a~~~~~~G~~v~~~~p~--~~r 275 (376)
T TIGR02318 207 GLANRSEIAALARARGIPL---------ASHDDDTPEHVAEAHDLGVTISEFPTTLEAAKEARSLGMQILMGAPN--IVR 275 (376)
T ss_pred cHHHHHHHHHHHHHCCCeE---------EEecCCCHHHHHHHHHCCCChhccCCCHHHHHHHHHcCCeEEECCcc--ccc
Confidence 4799999999999999877 666655555677766665 4788889999997643231 111
Q ss_pred chH--HHHHHHHHhcCCCCccccCccccccCCC
Q 006395 429 KIP--ENMQKQLEWCNEAPFYTLGPLTTDIAPG 459 (647)
Q Consensus 429 ~I~--~nv~lqk~lc~~APfYvLGPLvTDIApG 459 (647)
.-. .|..+.+-+-.|.+. -|.||-.|+
T Consensus 276 ~~~~~~~~~l~~~~~~G~~~----~l~SD~~p~ 304 (376)
T TIGR02318 276 GGSHSGNLSARELAHEGLLD----VLASDYVPA 304 (376)
T ss_pred cccccchHHHHHHHHCCCcE----EEEcCCCcH
Confidence 111 144455555566643 577888774
No 59
>PRK13404 dihydropyrimidinase; Provisional
Probab=70.59 E-value=50 Score=36.61 Aligned_cols=127 Identities=16% Similarity=0.172 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeE
Q 006395 298 SWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVAL 377 (647)
Q Consensus 298 t~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtl 377 (647)
+.+.+++.+.++++.||+.|-+-.+ .+| + .+-...+.++++.+++|++.+
T Consensus 133 ~~~~~~~~v~~l~~~G~~~iKi~~~------------------~~~-----~-------~~~~~~l~~~~~~a~~~g~~V 182 (477)
T PRK13404 133 TEEVLTEELPALIAQGYTSFKVFMT------------------YDD-----L-------KLDDRQILDVLAVARRHGAMV 182 (477)
T ss_pred ChhhHHHHHHHHHHcCCCEEEEEec------------------CCC-----C-------CCCHHHHHHHHHHHHhcCCEE
Confidence 3466667789999999998887642 001 0 111235666777777777555
Q ss_pred ec--cC----------CCCCCCccC---CCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcC
Q 006395 378 SI--GD----------GLRPGSIYD---ANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCN 442 (647)
Q Consensus 378 SL--GD----------GLRPG~i~D---A~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~nv~lqk~lc~ 442 (647)
.. -| .++.|.+.- ..-+..++|...+.+....|++.|+.+-|- ||-.-+=-+-++..|+ .
T Consensus 183 ~~Hae~~~~i~~~~~~~~~~G~~~~~~~~~~rp~~~E~~~v~~~~~la~~~g~~~hi~---Hvs~~~~~~~i~~~k~--~ 257 (477)
T PRK13404 183 MVHAENHDMIAWLTKRLLAAGLTAPKYHAISRPMLAEREATHRAIALAELVDVPILIV---HVSGREAAEQIRRARG--R 257 (477)
T ss_pred EEEeCCHHHHHHHHHHHHHCCCcchhhccccCCHHHHHHHHHHHHHHHHHhCCCEEEE---ECCCHHHHHHHHHHHH--C
Confidence 32 11 123332211 122356788888899999999999998663 6664332222332333 2
Q ss_pred CCCccccCccccccCCCchhHHH
Q 006395 443 EAPFYTLGPLTTDIAPGYDHITS 465 (647)
Q Consensus 443 ~APfYvLGPLvTDIApGYDHIts 465 (647)
+. +++.++.|+|=..+.
T Consensus 258 g~------~vt~e~~ph~L~l~~ 274 (477)
T PRK13404 258 GL------KIFAETCPQYLFLTA 274 (477)
T ss_pred CC------eEEEEEChhhhccCH
Confidence 32 355688888865554
No 60
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=70.51 E-value=38 Score=32.26 Aligned_cols=123 Identities=17% Similarity=0.252 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEe
Q 006395 299 WEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALS 378 (647)
Q Consensus 299 ~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlS 378 (647)
.+.+++.|++-++.||+++-+-.. +..++.+++.+.+|.++|++|++.|-
T Consensus 12 ~~~~~~~~~~~~~~g~~~v~lR~~------------------------------~~~~~~~~~~~~~l~~~~~~~~~~l~ 61 (196)
T TIGR00693 12 PADLLNRVEAALKGGVTLVQLRDK------------------------------GSNTRERLALAEKLQELCRRYGVPFI 61 (196)
T ss_pred cccHHHHHHHHHhcCCCEEEEecC------------------------------CCCHHHHHHHHHHHHHHHHHhCCeEE
Confidence 356888999999999998844211 11234455666666666666665555
Q ss_pred ccC----CCCCCC----c-cCCCcHHHHHHHH-----------HHHHHHHHHHhcCCeEEeeCC-CCC-------CCCch
Q 006395 379 IGD----GLRPGS----I-YDANDTAQFAELL-----------TQGELTRRAWDKDVQVMNEGP-GHI-------PMHKI 430 (647)
Q Consensus 379 LGD----GLRPG~----i-~DA~D~AQ~~EL~-----------~LGEL~krA~e~gVQVMIEGP-GHV-------Pl~~I 430 (647)
+-| .++-|+ + .+..+..+..++. +.-|+. +|.+.|+....=|| .+- |..-+
T Consensus 62 i~~~~~la~~~g~~GvHl~~~~~~~~~~r~~~~~~~~ig~s~h~~~e~~-~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~ 140 (196)
T TIGR00693 62 VNDRVDLALALGADGVHLGQDDLPASEARALLGPDKIIGVSTHNLEELA-EAEAEGADYIGFGPIFPTPTKKDPAPPAGV 140 (196)
T ss_pred EECHHHHHHHcCCCEEecCcccCCHHHHHHhcCCCCEEEEeCCCHHHHH-HHhHcCCCEEEECCccCCCCCCCCCCCCCH
Confidence 533 111111 1 1112333333332 124443 47778888865444 111 21112
Q ss_pred HHHHHHHHHhcCCCCccccCccc
Q 006395 431 PENMQKQLEWCNEAPFYTLGPLT 453 (647)
Q Consensus 431 ~~nv~lqk~lc~~APfYvLGPLv 453 (647)
+.++.-++.+.+-|+|.+|=+.
T Consensus 141 -~~l~~~~~~~~~~pv~a~GGI~ 162 (196)
T TIGR00693 141 -ELLREIAATSIDIPIVAIGGIT 162 (196)
T ss_pred -HHHHHHHHhcCCCCEEEECCcC
Confidence 2333334445557888888654
No 61
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.
Probab=70.49 E-value=15 Score=38.02 Aligned_cols=114 Identities=18% Similarity=0.229 Sum_probs=74.7
Q ss_pred CcCchhhhHHHHHHHHhHhce--eEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCC----
Q 006395 355 KENFAYEHWDEILDICNQYDV--ALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMH---- 428 (647)
Q Consensus 355 ~ENplY~~FD~ileI~k~YDV--tlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~---- 428 (647)
.++=.-.+.++||+++++|+| |+-+ .|.+++.+ -+++++..+.|-++..=|=.|..++
T Consensus 22 ~~~rv~~nt~riL~lL~~~gikATFFv-----~g~~~e~~-----------p~lir~i~~~GhEIgsHg~sH~~l~~ls~ 85 (265)
T TIGR03006 22 LPCRVERNTDRILDLLDRHGVKATFFT-----LGWVAERY-----------PELVRRIVAAGHELASHGYGHERVTTQTP 85 (265)
T ss_pred ccchHHHhHHHHHHHHHHcCCcEEEEE-----eccchhhC-----------HHHHHHHHHcCCEeeeccccCcCchhCCH
Confidence 344455689999999999998 5554 24444322 3678999999999999999999886
Q ss_pred -----chHHHHHHHHHhcCCCCccccCccccccCCCc--hhHHH-hHHHHHhhhcccceeeecCchhh--cCCCC
Q 006395 429 -----KIPENMQKQLEWCNEAPFYTLGPLTTDIAPGY--DHITS-AIGAANIGALGTALLCYVTPKEH--LGLPN 493 (647)
Q Consensus 429 -----~I~~nv~lqk~lc~~APfYvLGPLvTDIApGY--DHIts-AIGaA~aa~~Gad~LCYVTPaEH--LgLP~ 493 (647)
+|+...+.-+++++..|-+... |+| ++-+. |+ .+...+|-.+-|-+-|.-| .|.|+
T Consensus 86 ee~~~eI~~s~~~Le~itG~~~~gfRa-------P~~s~~~~t~~a~--~iL~e~Gy~YdsS~~p~~~d~~g~~~ 151 (265)
T TIGR03006 86 EAFRADIRRSKALLEDLSGQPVRGYRA-------PSFSIGKKNLWAL--DVLAEAGYRYSSSIYPVRHDHYGMPD 151 (265)
T ss_pred HHHHHHHHHHHHHHHHHhCCCceEEEC-------CCCCCCCCcHHHH--HHHHHCCCEEEEeeccCcCCcCCCCC
Confidence 4555666666677666544333 332 22221 12 3456688888888877633 45553
No 62
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=70.40 E-value=40 Score=35.62 Aligned_cols=117 Identities=25% Similarity=0.373 Sum_probs=63.0
Q ss_pred HHHHHHHHhHhcee-EeccCCCCCCCccCCCcHHHHHHHHHHH----------HHHHHHHhcCCeEEe-eC---CCCCCC
Q 006395 363 WDEILDICNQYDVA-LSIGDGLRPGSIYDANDTAQFAELLTQG----------ELTRRAWDKDVQVMN-EG---PGHIPM 427 (647)
Q Consensus 363 FD~ileI~k~YDVt-lSLGDGLRPG~i~DA~D~AQ~~EL~~LG----------EL~krA~e~gVQVMI-EG---PGHVPl 427 (647)
|++.++++.++.|. ++++-| .| ...+.+|...| +++++|.+.|+...+ +| -||..-
T Consensus 76 ~~~~~~~~~~~~v~~v~~~~g-~p--------~~~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~g~ 146 (307)
T TIGR03151 76 VDELVDLVIEEKVPVVTTGAG-NP--------GKYIPRLKENGVKVIPVVASVALAKRMEKAGADAVIAEGMESGGHIGE 146 (307)
T ss_pred HHHHHHHHHhCCCCEEEEcCC-Cc--------HHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEEECcccCCCCCC
Confidence 46677777777765 444322 22 23556665544 678999999998776 45 599752
Q ss_pred CchHHHHHHHHHhcC--CCCccccCccccccCCCchhHHHhH-HHHHhhhcccceeeecCchhhcCCCChhHHHHHHH
Q 006395 428 HKIPENMQKQLEWCN--EAPFYTLGPLTTDIAPGYDHITSAI-GAANIGALGTALLCYVTPKEHLGLPNRDDVKAGVI 502 (647)
Q Consensus 428 ~~I~~nv~lqk~lc~--~APfYvLGPLvTDIApGYDHItsAI-GaA~aa~~Gad~LCYVTPaEHLgLP~~eDVreGVi 502 (647)
. .++.+-++++. +-|+..-|=+. -+ .++.+|+ -||-+.+.|+.|||.. |- +..+..|+=++
T Consensus 147 ~---~~~~ll~~v~~~~~iPviaaGGI~----~~-~~~~~al~~GA~gV~iGt~f~~t~---Es---~~~~~~k~~l~ 210 (307)
T TIGR03151 147 L---TTMALVPQVVDAVSIPVIAAGGIA----DG-RGMAAAFALGAEAVQMGTRFLCAK---EC---NVHPNYKEKVL 210 (307)
T ss_pred C---cHHHHHHHHHHHhCCCEEEECCCC----CH-HHHHHHHHcCCCEeecchHHhccc---cc---CCCHHHHHHHH
Confidence 1 23444444443 25666665433 23 2343332 2344445555555542 21 44555666554
No 63
>PRK12677 xylose isomerase; Provisional
Probab=69.90 E-value=13 Score=40.42 Aligned_cols=121 Identities=16% Similarity=0.165 Sum_probs=72.1
Q ss_pred HHHHHHHHhCCCEeeecCCC------C-------ChHHHHHHHHhcCCCccccc-------hhhhH--HHHhcCccCCCC
Q 006395 241 YKVQWATMWGADTVMDLSTG------R-------HIHETREWILRNSAVPVGTV-------PIYQA--LEKVDGIAENLS 298 (647)
Q Consensus 241 eKl~~A~~~GADtvMDLSTG------g-------di~~~R~~Il~~spvPvGTV-------PIYqA--~~k~~g~~~dlt 298 (647)
|.+..+-++|++.|- |.-. - .+.++|+. ++..-+.|..| |.|.. +.--...+.+..
T Consensus 35 E~v~~~a~~Gf~gVE-lh~~~l~p~~~~~~~~~~~~~~lk~~-l~~~GL~v~~v~~n~f~~p~~~~g~lts~d~~~R~~A 112 (384)
T PRK12677 35 EAVHKLAELGAYGVT-FHDDDLVPFGATDAERDRIIKRFKKA-LDETGLVVPMVTTNLFTHPVFKDGAFTSNDRDVRRYA 112 (384)
T ss_pred HHHHHHHHhCCCEEE-ecccccCCCCCChhhhHHHHHHHHHH-HHHcCCeeEEEecCCCCCccccCCcCCCCCHHHHHHH
Confidence 677888899999884 4311 1 14455544 45556665544 33321 000001112233
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhH--hcee
Q 006395 299 WEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQ--YDVA 376 (647)
Q Consensus 299 ~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~--YDVt 376 (647)
-+.+.++|+--++-|+++|++|.|..-...+... .+-..| .-+-+.+++|++.+++ |+|.
T Consensus 113 i~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~~~~-----------d~~~a~-------~~~~eaL~~l~~~A~~~G~gV~ 174 (384)
T PRK12677 113 LRKVLRNIDLAAELGAKTYVMWGGREGAEYDAAK-----------DVRAAL-------DRYREAIDLLAAYVKDQGYDLR 174 (384)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeCCCCccCcccC-----------CHHHHH-------HHHHHHHHHHHHHHHhcCCCcE
Confidence 4568888899999999999999994322111111 122233 2235778999999998 7899
Q ss_pred EeccC
Q 006395 377 LSIGD 381 (647)
Q Consensus 377 lSLGD 381 (647)
|+|=-
T Consensus 175 laIEp 179 (384)
T PRK12677 175 FALEP 179 (384)
T ss_pred EEEcc
Confidence 99977
No 64
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=69.75 E-value=55 Score=33.29 Aligned_cols=109 Identities=15% Similarity=0.143 Sum_probs=72.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHh-
Q 006395 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQY- 373 (647)
Q Consensus 295 ~dlt~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~Y- 373 (647)
.+++++.+.+.|+...+.|||-+.+- |-+-+...++ .+++.++++++.+.
T Consensus 16 g~iD~~~~~~~i~~l~~~Gv~gl~v~-GstGE~~~lt----------------------------~~Er~~l~~~~~~~~ 66 (284)
T cd00950 16 GSVDFDALERLIEFQIENGTDGLVVC-GTTGESPTLS----------------------------DEEHEAVIEAVVEAV 66 (284)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEEC-CCCcchhhCC----------------------------HHHHHHHHHHHHHHh
Confidence 47999999999999999999998765 5444443332 45566777777665
Q ss_pred --ceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCe-EEeeCCCCCCCCchHHHHHHHHHhcC--CCCcc
Q 006395 374 --DVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQ-VMNEGPGHIPMHKIPENMQKQLEWCN--EAPFY 447 (647)
Q Consensus 374 --DVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQ-VMIEGPGHVPl~~I~~nv~lqk~lc~--~APfY 447 (647)
++.+-. |...-+++ ..-+|++.|.+.|+. ||+--|...+..+ ++-++.-+++|. +-|++
T Consensus 67 ~~~~~vi~------gv~~~~~~--------~~~~~a~~a~~~G~d~v~~~~P~~~~~~~-~~l~~~~~~ia~~~~~pi~ 130 (284)
T cd00950 67 NGRVPVIA------GTGSNNTA--------EAIELTKRAEKAGADAALVVTPYYNKPSQ-EGLYAHFKAIAEATDLPVI 130 (284)
T ss_pred CCCCcEEe------ccCCccHH--------HHHHHHHHHHHcCCCEEEEcccccCCCCH-HHHHHHHHHHHhcCCCCEE
Confidence 233332 22222222 236788888999998 7887787777765 666666666766 34554
No 65
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=69.69 E-value=8.3 Score=39.15 Aligned_cols=56 Identities=21% Similarity=0.351 Sum_probs=41.1
Q ss_pred CCCCCChHHHHHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHH
Q 006395 230 SAVASSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQ 309 (647)
Q Consensus 230 S~~~~~ie~EveKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQ 309 (647)
.+...+.+.|+++|++=+++|||-++ |=|+|++ +.|++.+++-
T Consensus 140 hp~~~~~~~~~~~L~~Ki~aGA~f~i------------------------TQ~~fd~-------------~~~~~~~~~~ 182 (274)
T cd00537 140 HPEAPSLEEDIKRLKRKVDAGADFII------------------------TQLFFDN-------------DAFLRFVDRC 182 (274)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEe------------------------ecccccH-------------HHHHHHHHHH
Confidence 33444689999999999999999887 3344443 5666666666
Q ss_pred HhcCCCEEEEeccc
Q 006395 310 AEQGVDYFTIHAGV 323 (647)
Q Consensus 310 aeqGVDf~TIHaGv 323 (647)
.+.|++ +.|++||
T Consensus 183 ~~~gi~-vPIi~GI 195 (274)
T cd00537 183 RAAGIT-VPIIPGI 195 (274)
T ss_pred HHcCCC-CCEEeec
Confidence 678886 6788886
No 66
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=69.13 E-value=34 Score=33.78 Aligned_cols=75 Identities=19% Similarity=0.189 Sum_probs=54.0
Q ss_pred HHHHHH-HHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCC
Q 006395 237 EEEVYK-VQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVD 315 (647)
Q Consensus 237 e~EveK-l~~A~~~GADtvMDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGVD 315 (647)
.++++. ++.|.+.|||-|-= +-.++++.+++. .+.+++|| +- -|.+.--|.+++++.+.+-.+.|++
T Consensus 142 ~~~i~~~~~~a~~~GaD~Ik~-~~~~~~~~~~~i-~~~~~~pv-----v~-----~GG~~~~~~~~~l~~~~~~~~~Ga~ 209 (235)
T cd00958 142 PDLIAYAARIGAELGADIVKT-KYTGDAESFKEV-VEGCPVPV-----VI-----AGGPKKDSEEEFLKMVYDAMEAGAA 209 (235)
T ss_pred HHHHHHHHHHHHHHCCCEEEe-cCCCCHHHHHHH-HhcCCCCE-----EE-----eCCCCCCCHHHHHHHHHHHHHcCCc
Confidence 378888 89999999998875 434478888665 46677654 21 1333445899999999999999999
Q ss_pred EEEEeccc
Q 006395 316 YFTIHAGV 323 (647)
Q Consensus 316 f~TIHaGv 323 (647)
-+.+=-.+
T Consensus 210 gv~vg~~i 217 (235)
T cd00958 210 GVAVGRNI 217 (235)
T ss_pred EEEechhh
Confidence 77654433
No 67
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=68.58 E-value=1.4e+02 Score=30.19 Aligned_cols=142 Identities=16% Similarity=0.121 Sum_probs=79.5
Q ss_pred ceeEeeccccCCCCCChHHHHHHHHHHHHhCCCEeeecCCCCChHHHHHHH--HhcCCCccccchhhhHHHHhcCccCCC
Q 006395 220 LVKVNANIGNSAVASSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWI--LRNSAVPVGTVPIYQALEKVDGIAENL 297 (647)
Q Consensus 220 ~tKVNANIGtS~~~~~ie~EveKl~~A~~~GADtvMDLSTGgdi~~~R~~I--l~~spvPvGTVPIYqA~~k~~g~~~dl 297 (647)
++.+++++|.+ +.++-++.++.+.+.|. +.+-+-.|.+.++-.+.| +|+. ++- .++| .++.+ ...
T Consensus 74 ~i~~~~~~~~~----~~~~~~~~~~~~~~~G~-~~~KiKvg~~~~~d~~~v~~vr~~-~g~-~~~l-----~vDan-~~~ 140 (265)
T cd03315 74 RVRVAHMLGLG----EPAEVAEEARRALEAGF-RTFKLKVGRDPARDVAVVAALREA-VGD-DAEL-----RVDAN-RGW 140 (265)
T ss_pred ceEEEEEecCC----CHHHHHHHHHHHHHCCC-CEEEEecCCCHHHHHHHHHHHHHh-cCC-CCEE-----EEeCC-CCc
Confidence 34556666543 45666677777788886 455566665543222211 1110 000 1111 11111 235
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchh-hhHHHHHHHHhHhcee
Q 006395 298 SWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAY-EHWDEILDICNQYDVA 376 (647)
Q Consensus 298 t~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY-~~FD~ileI~k~YDVt 376 (647)
|.++.++.+..-.+.|++|+-- |+- .+++.+-++.+..++.
T Consensus 141 ~~~~a~~~~~~l~~~~i~~iEe--------------------------------------P~~~~d~~~~~~l~~~~~ip 182 (265)
T cd03315 141 TPKQAIRALRALEDLGLDYVEQ--------------------------------------PLPADDLEGRAALARATDTP 182 (265)
T ss_pred CHHHHHHHHHHHHhcCCCEEEC--------------------------------------CCCcccHHHHHHHHhhCCCC
Confidence 6777777776666778888721 222 2467777888888888
Q ss_pred EeccCCCCCCCccCCCcHHHHHH-------------------HHHHHHHHHHHHhcCCeEEee
Q 006395 377 LSIGDGLRPGSIYDANDTAQFAE-------------------LLTQGELTRRAWDKDVQVMNE 420 (647)
Q Consensus 377 lSLGDGLRPG~i~DA~D~AQ~~E-------------------L~~LGEL~krA~e~gVQVMIE 420 (647)
+.+|-.+. +..++.+ |...-++++.|+++|+.+|+-
T Consensus 183 ia~dE~~~--------~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~ 237 (265)
T cd03315 183 IMADESAF--------TPHDAFRELALGAADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVG 237 (265)
T ss_pred EEECCCCC--------CHHHHHHHHHhCCCCEEEEecccccCHHHHHHHHHHHHHcCCcEEec
Confidence 88876542 2223333 233347788889999999875
No 68
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=67.74 E-value=87 Score=34.21 Aligned_cols=171 Identities=17% Similarity=0.102 Sum_probs=94.4
Q ss_pred CCCCChHHHHHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCc---cC-----CCCHHHH
Q 006395 231 AVASSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGI---AE-----NLSWEVF 302 (647)
Q Consensus 231 ~~~~~ie~EveKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~---~~-----dlt~e~~ 302 (647)
.+..++++.++.++.+++.|.|.|- ..+ .. + . .-| ...-+++.+..+. +. +. ...
T Consensus 10 lD~~~~~~~~~~~~~~~~~Gv~~ie-~g~--p~--~----~-----~~~-~~~i~~l~~~~~~~~ii~D~kl~d~-g~~- 72 (430)
T PRK07028 10 LDLLELDRAVEIAKEAVAGGADWIE-AGT--PL--I----K-----SEG-MNAIRTLRKNFPDHTIVADMKTMDT-GAI- 72 (430)
T ss_pred eccCCHHHHHHHHHHHHhcCCcEEE-eCC--HH--H----H-----Hhh-HHHHHHHHHHCCCCEEEEEeeeccc-hHH-
Confidence 4567899999999999999999983 311 00 0 0 000 1111222222111 00 11 111
Q ss_pred HHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCC
Q 006395 303 RDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDG 382 (647)
Q Consensus 303 ~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlSLGDG 382 (647)
-++.-++.|+|++++|..-. ..+..++++.++++++-+-+|
T Consensus 73 --~v~~a~~aGAdgV~v~g~~~-----------------------------------~~~~~~~i~~a~~~G~~~~~g-- 113 (430)
T PRK07028 73 --EVEMAAKAGADIVCILGLAD-----------------------------------DSTIEDAVRAARKYGVRLMAD-- 113 (430)
T ss_pred --HHHHHHHcCCCEEEEecCCC-----------------------------------hHHHHHHHHHHHHcCCEEEEE--
Confidence 45566789999999995311 011567888999988766553
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCC----CCCCchHHHHHHHHHhcCCCCccccCccccccCC
Q 006395 383 LRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGH----IPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAP 458 (647)
Q Consensus 383 LRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGH----VPl~~I~~nv~lqk~lc~~APfYvLGPLvTDIAp 458 (647)
++ -..+. -+.++.|.+.|+....=+||+ .+. ...+.++..++.++ .|+++.|=+.+
T Consensus 114 ----~~-s~~t~---------~e~~~~a~~~GaD~I~~~pg~~~~~~~~-~~~~~l~~l~~~~~-iPI~a~GGI~~---- 173 (430)
T PRK07028 114 ----LI-NVPDP---------VKRAVELEELGVDYINVHVGIDQQMLGK-DPLELLKEVSEEVS-IPIAVAGGLDA---- 173 (430)
T ss_pred ----ec-CCCCH---------HHHHHHHHhcCCCEEEEEeccchhhcCC-ChHHHHHHHHhhCC-CcEEEECCCCH----
Confidence 11 11111 122477778899888878886 222 22345555555554 77777772211
Q ss_pred CchhHHHhHHHHHhhhcccceeeecCc
Q 006395 459 GYDHITSAIGAANIGALGTALLCYVTP 485 (647)
Q Consensus 459 GYDHItsAIGaA~aa~~Gad~LCYVTP 485 (647)
+.+ .....+||+.+|..+-
T Consensus 174 --~n~------~~~l~aGAdgv~vGsa 192 (430)
T PRK07028 174 --ETA------AKAVAAGADIVIVGGN 192 (430)
T ss_pred --HHH------HHHHHcCCCEEEEChH
Confidence 222 2334568888887653
No 69
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=67.58 E-value=13 Score=40.64 Aligned_cols=199 Identities=16% Similarity=0.209 Sum_probs=129.2
Q ss_pred cCCCCCChHHHHHHHHHHHHhCCCE----eeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHH
Q 006395 229 NSAVASSIEEEVYKVQWATMWGADT----VMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRD 304 (647)
Q Consensus 229 tS~~~~~ie~EveKl~~A~~~GADt----vMDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d 304 (647)
|..++.|++.-++....-.++|+|- |-|.-....|.+||+ .+++|+ +.|+-.| ..
T Consensus 26 tnt~T~Dv~atv~QI~~L~~aGceiVRvavp~~~~A~al~~I~~----~~~iPl---------------VADIHFd--~~ 84 (346)
T TIGR00612 26 TNTDTIDIDSTVAQIRALEEAGCDIVRVTVPDRESAAAFEAIKE----GTNVPL---------------VADIHFD--YR 84 (346)
T ss_pred CCCCchhHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHh----CCCCCE---------------EEeeCCC--cH
Confidence 4566889999999999999999995 455555555555555 677765 2333222 22
Q ss_pred HHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCC
Q 006395 305 TLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLR 384 (647)
Q Consensus 305 ~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlSLGDGLR 384 (647)
.-.+-+++|||-+-|-.| +|-+ .++|.++.+.||+|++.+=+| .=
T Consensus 85 lAl~a~~~g~dkiRINPG--------------Nig~-------------------~e~v~~vv~~ak~~~ipIRIG--VN 129 (346)
T TIGR00612 85 LAALAMAKGVAKVRINPG--------------NIGF-------------------RERVRDVVEKARDHGKAMRIG--VN 129 (346)
T ss_pred HHHHHHHhccCeEEECCC--------------CCCC-------------------HHHHHHHHHHHHHCCCCEEEe--cC
Confidence 334558999999999888 1211 589999999999999998775 44
Q ss_pred CCCccCCCcHHHHHHH--HHHHHHHH-------HHHhcC---CeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCcc
Q 006395 385 PGSIYDANDTAQFAEL--LTQGELTR-------RAWDKD---VQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPL 452 (647)
Q Consensus 385 PG~i~DA~D~AQ~~EL--~~LGEL~k-------rA~e~g---VQVMIEGPGHVPl~~I~~nv~lqk~lc~~APfYvLGPL 452 (647)
.||+. ...+++. -+---|++ ...+.| +-+-+. -+=+...|++|-.+.++ |+ -||. ==
T Consensus 130 ~GSL~----~~~~~kyg~~t~eamveSAl~~v~~le~~~F~diviS~K--sSdv~~~i~ayr~la~~-~d-yPLH---lG 198 (346)
T TIGR00612 130 HGSLE----RRLLEKYGDATAEAMVQSALEEAAILEKLGFRNVVLSMK--ASDVAETVAAYRLLAER-SD-YPLH---LG 198 (346)
T ss_pred CCCCc----HHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEE--cCCHHHHHHHHHHHHhh-CC-CCce---ec
Confidence 56654 2222211 01001333 333333 333333 23445678888888777 54 4443 33
Q ss_pred ccccCCCchhH---HHhHHHHHhhhcccceeeecCchhhcCCCChhHHHHH
Q 006395 453 TTDIAPGYDHI---TSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKAG 500 (647)
Q Consensus 453 vTDIApGYDHI---tsAIGaA~aa~~Gad~LCYVTPaEHLgLP~~eDVreG 500 (647)
||--.++++=+ +.+||..+.---|--+-.-+|.. | .++|+-|
T Consensus 199 VTEAG~~~~G~IKSaigig~LL~~GIGDTIRVSLT~d-----P-~~EV~va 243 (346)
T TIGR00612 199 VTEAGMGVKGIVKSSAGIGILLARGIGDTIRVSLTDD-----P-THEVPVA 243 (346)
T ss_pred cccCCCCCCchhHHHHHHHHHHhhCCCCeEEEECCCC-----c-HHHHHHH
Confidence 88888888864 56778888888898899988842 3 6666655
No 70
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=67.39 E-value=1.5e+02 Score=30.35 Aligned_cols=186 Identities=17% Similarity=0.112 Sum_probs=95.1
Q ss_pred eEeeccccCCCCCChHHHHHHHHHHHHhCCCE----eeecCCCCChH---HHHHHHHhc-CCCccccchhhhHHHHhcCc
Q 006395 222 KVNANIGNSAVASSIEEEVYKVQWATMWGADT----VMDLSTGRHIH---ETREWILRN-SAVPVGTVPIYQALEKVDGI 293 (647)
Q Consensus 222 KVNANIGtS~~~~~ie~EveKl~~A~~~GADt----vMDLSTGgdi~---~~R~~Il~~-spvPvGTVPIYqA~~k~~g~ 293 (647)
+|-.+| -|++...+++|+++++ ++|+|. |||=.--.||. .+=++|-+. +.+|+ + ++=-
T Consensus 5 ~i~pSi-l~ad~~~l~~~i~~l~---~~g~d~lHiDimDG~FVPN~tfg~~~i~~lr~~~~~~~~------d----vHLM 70 (223)
T PRK08745 5 AIAPSI-LSADFARLGEEVDNVL---KAGADWVHFDVMDNHYVPNLTIGPMVCQALRKHGITAPI------D----VHLM 70 (223)
T ss_pred EEEeeh-hhcCHHHHHHHHHHHH---HcCCCEEEEecccCccCCCcccCHHHHHHHHhhCCCCCE------E----EEec
Confidence 455555 4666677888887765 579998 67744333321 122233233 22221 1 0000
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCC-----cCchhhhHHHHHH
Q 006395 294 AENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHK-----ENFAYEHWDEILD 368 (647)
Q Consensus 294 ~~dlt~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~-----ENplY~~FD~ile 368 (647)
+. +++. .|+.-++.|+|++|||+--+.. +.. +.+|+..++. =|| .|.++.|..
T Consensus 71 v~--~P~~---~i~~~~~~gad~I~~H~Ea~~~-~~~---------------~l~~Ir~~g~k~GlalnP-~T~~~~i~~ 128 (223)
T PRK08745 71 VE--PVDR---IVPDFADAGATTISFHPEASRH-VHR---------------TIQLIKSHGCQAGLVLNP-ATPVDILDW 128 (223)
T ss_pred cC--CHHH---HHHHHHHhCCCEEEEcccCccc-HHH---------------HHHHHHHCCCceeEEeCC-CCCHHHHHH
Confidence 11 2344 4566677899999999985422 111 1233333332 277 488899999
Q ss_pred HHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccc
Q 006395 369 ICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYT 448 (647)
Q Consensus 369 I~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~nv~lqk~lc~~APfYv 448 (647)
++..-|..|=+. .-||.-.=.--+..+.-+..|-++.+ +++..+-||=-|-|-. +|+..-.+ .||=.+|
T Consensus 129 ~l~~vD~VlvMt--V~PGf~GQ~fi~~~l~KI~~l~~~~~---~~~~~~~IeVDGGI~~----eti~~l~~--aGaDi~V 197 (223)
T PRK08745 129 VLPELDLVLVMS--VNPGFGGQAFIPSALDKLRAIRKKID---ALGKPIRLEIDGGVKA----DNIGAIAA--AGADTFV 197 (223)
T ss_pred HHhhcCEEEEEE--ECCCCCCccccHHHHHHHHHHHHHHH---hcCCCeeEEEECCCCH----HHHHHHHH--cCCCEEE
Confidence 999999776552 34554433333333333333333332 3343333333334432 34432222 4567777
Q ss_pred cCcccc
Q 006395 449 LGPLTT 454 (647)
Q Consensus 449 LGPLvT 454 (647)
.|--+.
T Consensus 198 ~GSaiF 203 (223)
T PRK08745 198 AGSAIF 203 (223)
T ss_pred EChhhh
Confidence 775443
No 71
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=66.63 E-value=80 Score=34.64 Aligned_cols=80 Identities=19% Similarity=0.171 Sum_probs=46.1
Q ss_pred HHHHHHhCCCEeeecC----CCCChHHHHHHHHhcCC------------CccccchhhhHHHHhc--Ccc--CCCCHHHH
Q 006395 243 VQWATMWGADTVMDLS----TGRHIHETREWILRNSA------------VPVGTVPIYQALEKVD--GIA--ENLSWEVF 302 (647)
Q Consensus 243 l~~A~~~GADtvMDLS----TGgdi~~~R~~Il~~sp------------vPvGTVPIYqA~~k~~--g~~--~dlt~e~~ 302 (647)
+.+.-++|+-.++-.. ...+.+.++++|.+.-+ .|+..==+|+.+..+. +.. ..++..+.
T Consensus 64 a~avs~~GglGvl~~~gl~~~~~~~e~l~~qi~~~~~~~~~~~~~~~~~~P~~p~l~~~iv~~~~~~~V~v~vr~~~~~~ 143 (368)
T PRK08649 64 AIELGKLGGLGVLNLEGLWTRYEDPEPILDEIASLGKDEATRLMQELYAEPIKPELITERIAEIRDAGVIVAVSLSPQRA 143 (368)
T ss_pred HHHHHhCCCceEEeeccccccCCCHHHHHHHHHhcCcHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCeEEEEEecCCcCH
Confidence 4566789998888721 23578888888865433 2222100133333221 211 22344455
Q ss_pred HHHHHHHHhcCCCEEEEecc
Q 006395 303 RDTLIEQAEQGVDYFTIHAG 322 (647)
Q Consensus 303 ~d~i~eQaeqGVDf~TIHaG 322 (647)
.+.++.-.+.|||++++|..
T Consensus 144 ~e~a~~l~eaGvd~I~vhgr 163 (368)
T PRK08649 144 QELAPTVVEAGVDLFVIQGT 163 (368)
T ss_pred HHHHHHHHHCCCCEEEEecc
Confidence 56666667899999999985
No 72
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=65.91 E-value=39 Score=38.20 Aligned_cols=78 Identities=22% Similarity=0.287 Sum_probs=46.6
Q ss_pred ceeEeeccccCCCCCChHHHHHHHHHHHHhCCCEe-eecCCCCChH--HHHHHHHhc---CCCccccchhhhHHHHhcCc
Q 006395 220 LVKVNANIGNSAVASSIEEEVYKVQWATMWGADTV-MDLSTGRHIH--ETREWILRN---SAVPVGTVPIYQALEKVDGI 293 (647)
Q Consensus 220 ~tKVNANIGtS~~~~~ie~EveKl~~A~~~GADtv-MDLSTGgdi~--~~R~~Il~~---spvPvGTVPIYqA~~k~~g~ 293 (647)
+.-|-+-+|++. ++++.++..+++|+|.| +|.+.|.... +.=++|-+. .+|-.|+|--.+.+..+
T Consensus 229 rL~Vgaavg~~~------~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~--- 299 (495)
T PTZ00314 229 QLLVGAAISTRP------EDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNL--- 299 (495)
T ss_pred CEEEEEEECCCH------HHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHH---
Confidence 444666666654 45788888999999998 4887763332 222333333 33444555444433332
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCEEEE--ecc
Q 006395 294 AENLSWEVFRDTLIEQAEQGVDYFTI--HAG 322 (647)
Q Consensus 294 ~~dlt~e~~~d~i~eQaeqGVDf~TI--HaG 322 (647)
.+.|+||+-+ +.|
T Consensus 300 ----------------~~aGad~I~vg~g~G 314 (495)
T PTZ00314 300 ----------------IDAGADGLRIGMGSG 314 (495)
T ss_pred ----------------HHcCCCEEEECCcCC
Confidence 5789999864 554
No 73
>PRK09989 hypothetical protein; Provisional
Probab=65.79 E-value=29 Score=34.57 Aligned_cols=120 Identities=11% Similarity=-0.002 Sum_probs=67.3
Q ss_pred HHHHHHHHhCCCEeee-cCCCCChHHHHHHHHhcCCCccc--cchhhhHHHHhc-C-ccCCCCH----HHHHHHHHHHHh
Q 006395 241 YKVQWATMWGADTVMD-LSTGRHIHETREWILRNSAVPVG--TVPIYQALEKVD-G-IAENLSW----EVFRDTLIEQAE 311 (647)
Q Consensus 241 eKl~~A~~~GADtvMD-LSTGgdi~~~R~~Il~~spvPvG--TVPIYqA~~k~~-g-~~~dlt~----e~~~d~i~eQae 311 (647)
+.++.+-++|=|.|== ...+-+..++|+.+ +...+.+- +.|.- .+.... + ....-.. +.+...|+.-.+
T Consensus 19 ~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l-~~~Gl~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~i~~A~~ 96 (258)
T PRK09989 19 ERFAAARKAGFDAVEFLFPYDYSTLQIQKQL-EQNHLTLALFNTAPG-DINAGEWGLSALPGREHEARADIDLALEYALA 96 (258)
T ss_pred HHHHHHHHcCCCEEEECCcccCCHHHHHHHH-HHcCCcEEEeccCCC-ccCCCCCcccCCCccHHHHHHHHHHHHHHHHH
Confidence 6778888999998842 22456778888876 33333222 11210 000000 0 0011112 335555556678
Q ss_pred cCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCC
Q 006395 312 QGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRP 385 (647)
Q Consensus 312 qGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlSLGDGLRP 385 (647)
-|++++.+|+|..... .+--..| +-+.+.+.++++++++++|+|-|= +|++
T Consensus 97 lg~~~v~v~~g~~~~~---------------~~~~~~~-------~~~~~~l~~l~~~a~~~gv~l~lE-~l~~ 147 (258)
T PRK09989 97 LNCEQVHVMAGVVPAG---------------EDAERYR-------AVFIDNLRYAADRFAPHGKRILVE-ALSP 147 (258)
T ss_pred hCcCEEEECccCCCCC---------------CCHHHHH-------HHHHHHHHHHHHHHHhcCCEEEEE-eCCC
Confidence 8999999999843211 1100111 124688999999999999999863 4444
No 74
>PLN02334 ribulose-phosphate 3-epimerase
Probab=65.27 E-value=20 Score=35.74 Aligned_cols=78 Identities=18% Similarity=0.197 Sum_probs=47.8
Q ss_pred CCCCCChHHHHHHHHHHHHhCCCE----eeecCCCCChH---HHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHH
Q 006395 230 SAVASSIEEEVYKVQWATMWGADT----VMDLSTGRHIH---ETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVF 302 (647)
Q Consensus 230 S~~~~~ie~EveKl~~A~~~GADt----vMDLSTGgdi~---~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~ 302 (647)
|-.+.+...-.+.++.++++|+|. +||.+.-.++. ++=++|-+.+..+++ |++. + .+++++
T Consensus 13 s~~~~~~~~l~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~~~~~~~-vhlm---------v--~~p~d~ 80 (229)
T PLN02334 13 SILSADFANLAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKHTDAPLD-CHLM---------V--TNPEDY 80 (229)
T ss_pred ehhhcCHHHHHHHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhcCCCcEE-EEec---------c--CCHHHH
Confidence 333445445556677888999998 57776655555 455555555555542 2221 1 123444
Q ss_pred HHHHHHHHhcCCCEEEEecc
Q 006395 303 RDTLIEQAEQGVDYFTIHAG 322 (647)
Q Consensus 303 ~d~i~eQaeqGVDf~TIHaG 322 (647)
.+ .-.+-|.|++|+|.|
T Consensus 81 ~~---~~~~~gad~v~vH~~ 97 (229)
T PLN02334 81 VP---DFAKAGASIFTFHIE 97 (229)
T ss_pred HH---HHHHcCCCEEEEeec
Confidence 44 447789999999999
No 75
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=65.08 E-value=14 Score=37.10 Aligned_cols=79 Identities=16% Similarity=0.199 Sum_probs=42.4
Q ss_pred HHHHHHHHhCCCEe-------------eecCCCCChHHHHHHHHhcCCCccccchhhh----HHHHhcCccCCCCHHHHH
Q 006395 241 YKVQWATMWGADTV-------------MDLSTGRHIHETREWILRNSAVPVGTVPIYQ----ALEKVDGIAENLSWEVFR 303 (647)
Q Consensus 241 eKl~~A~~~GADtv-------------MDLSTGgdi~~~R~~Il~~spvPvGTVPIYq----A~~k~~g~~~dlt~e~~~ 303 (647)
+.++.+-++|-|.| +|+| ..++.++|+.+ +...+.|..+-... .+...+..+.+-..+.+.
T Consensus 20 e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~-~~~~~~~~~~l-~~~gl~i~~~~~~~~~~~~l~~~~~~~r~~~~~~~~ 97 (279)
T TIGR00542 20 ERLQLAKTCGFDFVEMSVDETDDRLSRLDWS-REQRLALVNAI-IETGVRIPSMCLSAHRRFPLGSKDKAVRQQGLEIME 97 (279)
T ss_pred HHHHHHHHcCCCEEEEecCCccchhhccCCC-HHHHHHHHHHH-HHcCCCceeeecCCCccCcCCCcCHHHHHHHHHHHH
Confidence 34567779999998 3332 23455555554 55556654332110 000000001111235677
Q ss_pred HHHHHHHhcCCCEEEEec
Q 006395 304 DTLIEQAEQGVDYFTIHA 321 (647)
Q Consensus 304 d~i~eQaeqGVDf~TIHa 321 (647)
+.|+--.+-|+.+++++.
T Consensus 98 ~~i~~a~~lG~~~v~~~~ 115 (279)
T TIGR00542 98 KAIQLARDLGIRTIQLAG 115 (279)
T ss_pred HHHHHHHHhCCCEEEecC
Confidence 778888889999998864
No 76
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=64.78 E-value=53 Score=33.01 Aligned_cols=79 Identities=13% Similarity=0.039 Sum_probs=51.7
Q ss_pred hhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHH-HHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHH
Q 006395 360 YEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELL-TQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQL 438 (647)
Q Consensus 360 Y~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~-~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~nv~lqk 438 (647)
-++|.+.+++|++.++..=.=-|-+.. .+-.+..++..+. .|.+|++.|.++||.+.+|.-+.-.++.+....++.+
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~~~~--~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~~~~~~~~t~~~~~~li~ 170 (279)
T TIGR00542 93 LEIMEKAIQLARDLGIRTIQLAGYDVY--YEEHDEETRRRFREGLKEAVELAARAQVTLAVEIMDTPFMSSISKWLKWDH 170 (279)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCcccc--cCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEeeCCCchhcCHHHHHHHHH
Confidence 567899999999998653221121111 2233455555554 6889999999999999999632234566666666665
Q ss_pred Hh
Q 006395 439 EW 440 (647)
Q Consensus 439 ~l 440 (647)
.+
T Consensus 171 ~v 172 (279)
T TIGR00542 171 YL 172 (279)
T ss_pred Hc
Confidence 54
No 77
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=64.63 E-value=23 Score=37.66 Aligned_cols=135 Identities=18% Similarity=0.218 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEec
Q 006395 300 EVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSI 379 (647)
Q Consensus 300 e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlSL 379 (647)
+++-.++++-++.|+|.+..|-|+.+..-+...+++-=||-..++ +|=.+..||. .+..+.
T Consensus 43 ~d~e~~v~~v~~~g~dav~~~~G~~~~~~~~y~~dvplivkl~~~-----------t~l~~~~~~~--------~~~~~v 103 (265)
T COG1830 43 EDPENIVAKVAEAGADAVAMTPGIARSVHRGYAHDVPLIVKLNGS-----------TSLSPDPNDQ--------VLVATV 103 (265)
T ss_pred cCHHHHHHHHHhcCCCEEEecHhHHhhcCccccCCcCEEEEeccc-----------cccCCCcccc--------eeeeeH
Confidence 456678888899999999999999998888777788888887776 3333333332 233444
Q ss_pred cCCCCCCCccCC-----CcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCcccc
Q 006395 380 GDGLRPGSIYDA-----NDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTT 454 (647)
Q Consensus 380 GDGLRPG~i~DA-----~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~nv~lqk~lc~~APfYvLGPLvT 454 (647)
=|.+|-|..+=+ .-+-.-+.|..++++.++|.++|.-+|++ -|.-||-+.
T Consensus 104 e~ai~lgadAV~~~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~-------------------------~YpRg~~~~ 158 (265)
T COG1830 104 EDAIRLGADAVGATVYVGSETEREMIENISQVVEDAHELGMPLVAW-------------------------AYPRGPAIK 158 (265)
T ss_pred HHHHhCCCcEEEEEEecCCcchHHHHHHHHHHHHHHHHcCCceEEE-------------------------EeccCCccc
Confidence 455544432210 00111566788899999999999999985 266677665
Q ss_pred ccCCCchhHHHhHHH--HHhhhcccceee
Q 006395 455 DIAPGYDHITSAIGA--ANIGALGTALLC 481 (647)
Q Consensus 455 DIApGYDHItsAIGa--A~aa~~Gad~LC 481 (647)
|= |++..-.+|= =+++-.|||++=
T Consensus 159 ~~---~~~d~~~v~~aaRlaaelGADIiK 184 (265)
T COG1830 159 DE---YHRDADLVGYAARLAAELGADIIK 184 (265)
T ss_pred cc---ccccHHHHHHHHHHHHHhcCCeEe
Confidence 54 8888888873 367778888873
No 78
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=64.61 E-value=1.5e+02 Score=31.14 Aligned_cols=155 Identities=18% Similarity=0.170 Sum_probs=79.6
Q ss_pred CCceeEeeccccCCCCCChHHHHHHHHHHHHhCCCEe-eecCCCCC----hHHHHHHHH--hcCCCccc-cchhhhHHHH
Q 006395 218 NFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTV-MDLSTGRH----IHETREWIL--RNSAVPVG-TVPIYQALEK 289 (647)
Q Consensus 218 g~~tKVNANIGtS~~~~~ie~EveKl~~A~~~GADtv-MDLSTGgd----i~~~R~~Il--~~spvPvG-TVPIYqA~~k 289 (647)
.-++.+.+++|.... +.++-++.++.+.+.|.++| +-+..+.. +...++.|- |.. +| .++|. ..
T Consensus 124 ~~~v~~~~~~~~~~~--~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~---~g~~~~l~---vD 195 (357)
T cd03316 124 RDRVRVYASGGGYDD--SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREA---VGPDVDLM---VD 195 (357)
T ss_pred CCceeeEEecCCCCC--CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHh---hCCCCEEE---EE
Confidence 355667776653221 56666777888889999977 33322210 222222211 110 00 01110 01
Q ss_pred hcCccCCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhh-hHHHHHH
Q 006395 290 VDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYE-HWDEILD 368 (647)
Q Consensus 290 ~~g~~~dlt~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~-~FD~ile 368 (647)
++ ..+|.++.++.+..-.+.|++|+= -|+.. .++.+-+
T Consensus 196 aN---~~~~~~~a~~~~~~l~~~~i~~iE--------------------------------------qP~~~~~~~~~~~ 234 (357)
T cd03316 196 AN---GRWDLAEAIRLARALEEYDLFWFE--------------------------------------EPVPPDDLEGLAR 234 (357)
T ss_pred CC---CCCCHHHHHHHHHHhCccCCCeEc--------------------------------------CCCCccCHHHHHH
Confidence 12 234666666666555455666531 13332 5667777
Q ss_pred HHhHhceeEeccCCCCCCCccC--------CCcHHHH-----HHHHHHHHHHHHHHhcCCeEEeeCCC
Q 006395 369 ICNQYDVALSIGDGLRPGSIYD--------ANDTAQF-----AELLTQGELTRRAWDKDVQVMNEGPG 423 (647)
Q Consensus 369 I~k~YDVtlSLGDGLRPG~i~D--------A~D~AQ~-----~EL~~LGEL~krA~e~gVQVMIEGPG 423 (647)
+.++.++-+.+|..++- ..| +-|-.|+ .-+...-++++.|.++|++||+-+-+
T Consensus 235 l~~~~~ipi~~dE~~~~--~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~~~ 300 (357)
T cd03316 235 LRQATSVPIAAGENLYT--RWEFRDLLEAGAVDIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHGAG 300 (357)
T ss_pred HHHhCCCCEEecccccc--HHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeEeccCCC
Confidence 77777888888776531 111 1111111 12333347778899999999986543
No 79
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=64.43 E-value=7.9 Score=39.39 Aligned_cols=143 Identities=17% Similarity=0.131 Sum_probs=83.6
Q ss_pred HHHHHHHHhCCCEeeecCCCCC-----------hHHHHHHHHhcCCCc---cccchhhh-HHHHhcCccCCCCHHHHHHH
Q 006395 241 YKVQWATMWGADTVMDLSTGRH-----------IHETREWILRNSAVP---VGTVPIYQ-ALEKVDGIAENLSWEVFRDT 305 (647)
Q Consensus 241 eKl~~A~~~GADtvMDLSTGgd-----------i~~~R~~Il~~spvP---vGTVPIYq-A~~k~~g~~~dlt~e~~~d~ 305 (647)
+-+..|.+.|+|+|+=.+.... +.++|+..-++. +. +..-..|- -+.-.+..+.+.+.+.|.+.
T Consensus 15 ~a~~~~~~~G~~~~qif~~~P~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~Hapy~iNlas~~~~~r~~sv~~~~~~ 93 (274)
T TIGR00587 15 AAYNRAAEIGATAFMFFLKSPRWWRRPMLEEEVIDWFKAALETNK-NLSQIVLVHAPYLINLASPDEEKEEKSLDVLDEE 93 (274)
T ss_pred HHHHHHHHhCCCEEEEEecCccccCCCCCCHHHHHHHHHHHHHcC-CCCcceeccCCeeeecCCCCHHHHHHHHHHHHHH
Confidence 3567889999999986554443 455555544442 32 33333342 11111223344567889999
Q ss_pred HHHHHhcCCCEEEEeccccccc-----cccccCcccCccccccHHHHHHHHHc--CCcCchhhhHHHHHHHHhHh-----
Q 006395 306 LIEQAEQGVDYFTIHAGVLLRY-----IPLTAKRMTGIVSRGGSIHAKWCLAY--HKENFAYEHWDEILDICNQY----- 373 (647)
Q Consensus 306 i~eQaeqGVDf~TIHaGv~~~~-----~~~~~~R~tgIVSRGGSi~a~Wml~~--~~ENplY~~FD~ileI~k~Y----- 373 (647)
|+.-.+-|.+++++|.|-.... +.....-+.-++..... ..-++.| ..+|.+...++++.+++++.
T Consensus 94 i~~A~~lga~~vv~H~G~~~~~~~e~~~~~~~~~l~~l~~~~~~--v~l~lEN~~~~~~~l~~~~~el~~ll~~~~~~~~ 171 (274)
T TIGR00587 94 LKRCELLGIMLYNFHPGSALKCSEEEGLDNLIESLNVVIKETKI--VTILLENMAGQGSELGRSFEELAYIIKVIVDKRR 171 (274)
T ss_pred HHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHhccCC--CEEEEEeCCCCCCccCCCHHHHHHHHHhcCCCCc
Confidence 9999999999999999975321 11111111111221111 2233443 45678888999999999765
Q ss_pred -ceeEeccCCCCCC
Q 006395 374 -DVALSIGDGLRPG 386 (647)
Q Consensus 374 -DVtlSLGDGLRPG 386 (647)
.++|=.|-..-.|
T Consensus 172 lg~~lDt~H~~~~g 185 (274)
T TIGR00587 172 IGVCLDTCHFFAAG 185 (274)
T ss_pred eEEEEEhhhHHhcC
Confidence 3677777766666
No 80
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=64.06 E-value=45 Score=36.18 Aligned_cols=119 Identities=23% Similarity=0.261 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHH-hCCCEeeecCCC-CChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHH----
Q 006395 237 EEEVYKVQWATM-WGADTVMDLSTG-RHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQA---- 310 (647)
Q Consensus 237 e~EveKl~~A~~-~GADtvMDLSTG-gdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQa---- 310 (647)
-.-++|+.-|++ .|+-.++-|.-+ |-... .... ....|++--|+-.... .+..+..||.+++-++|+.-+
T Consensus 82 i~~~k~l~davh~~G~~i~~QL~H~~Gr~~~--~~~~-~~~~~~~ps~~~~~~~-~~~~p~~mt~~eI~~ii~~f~~AA~ 157 (382)
T cd02931 82 IRTAKEMTERVHAYGTKIFLQLTAGFGRVCI--PGFL-GEDKPVAPSPIPNRWL-PEITCRELTTEEVETFVGKFGESAV 157 (382)
T ss_pred hHHHHHHHHHHHHcCCEEEEEccCcCCCccC--cccc-CCCCccCCCCCCCCcC-CCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 356777776665 899999999864 42211 0000 0012222222111000 013568899999998888765
Q ss_pred ---hcCCCEEEEec---cc-cccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHH
Q 006395 311 ---EQGVDYFTIHA---GV-LLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILD 368 (647)
Q Consensus 311 ---eqGVDf~TIHa---Gv-~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ile 368 (647)
+.|.|.+=||+ |- .-+.+.-..++.|. .-|||+.- +-.|+.+-.+.|-+
T Consensus 158 ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtD--eyGGslen-------R~rf~~eii~~vr~ 213 (382)
T cd02931 158 IAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTD--KYGGSLEN-------RLRFAIEIVEEIKA 213 (382)
T ss_pred HHHHcCCCEEEEeccccChHHHHhcCCccCCCCC--cCCCCHHH-------HhHHHHHHHHHHHH
Confidence 67999999998 63 44455444555555 35898753 34455555554444
No 81
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=63.72 E-value=29 Score=35.50 Aligned_cols=161 Identities=19% Similarity=0.190 Sum_probs=95.7
Q ss_pred cccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccc--cC----cccCccccc--cH---H-
Q 006395 278 VGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLT--AK----RMTGIVSRG--GS---I- 345 (647)
Q Consensus 278 vGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~--~~----R~tgIVSRG--GS---i- 345 (647)
.-.||+-+.+.+ |. .-+.+++...+++-.+-|+|-+.+|.|......+.. .. |+.+.++=| |. +
T Consensus 21 ~~~~a~Dh~~l~--gp--~~~~~d~~~~~~~a~~~~~~av~v~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~ 96 (267)
T PRK07226 21 TVIVPMDHGVSH--GP--IDGLVDIRDTVNKVAEGGADAVLMHKGLARHGHRGYGRDVGLIVHLSASTSLSPDPNDKVLV 96 (267)
T ss_pred EEEEECCCcccc--CC--CcCcCCHHHHHHHHHhcCCCEEEeCHhHHhhhccccCCCCcEEEEEcCCCCCCCCCCcceee
Confidence 445777776653 22 348889999888888889999999999866644321 22 333333322 22 0
Q ss_pred -HHHHHHHcC-------------CcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHH
Q 006395 346 -HAKWCLAYH-------------KENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAW 411 (647)
Q Consensus 346 -~a~Wml~~~-------------~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~ 411 (647)
-+...+..+ +++..++...+++++|++|++.|=+=+.-+...+.+..|. ..+.++++.|-
T Consensus 97 ~~ve~A~~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~------~~i~~a~~~a~ 170 (267)
T PRK07226 97 GTVEEAIKLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDP------EVVAHAARVAA 170 (267)
T ss_pred ecHHHHHHcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccH------HHHHHHHHHHH
Confidence 022233322 2566788888999999999987654222221222222232 24567788888
Q ss_pred hcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCcccc
Q 006395 412 DKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTT 454 (647)
Q Consensus 412 e~gVQVMIEGPGHVPl~~I~~nv~lqk~lc~~APfYvLGPLvT 454 (647)
+.|+-..=-+.. - . .+.++...+.|. .|.+..|=+-+
T Consensus 171 e~GAD~vKt~~~---~-~-~~~l~~~~~~~~-ipV~a~GGi~~ 207 (267)
T PRK07226 171 ELGADIVKTNYT---G-D-PESFREVVEGCP-VPVVIAGGPKT 207 (267)
T ss_pred HHCCCEEeeCCC---C-C-HHHHHHHHHhCC-CCEEEEeCCCC
Confidence 999987744421 1 1 134444444444 89999997664
No 82
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=63.51 E-value=10 Score=40.44 Aligned_cols=66 Identities=27% Similarity=0.281 Sum_probs=41.4
Q ss_pred HHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 006395 240 VYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTI 319 (647)
Q Consensus 240 veKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGVDf~TI 319 (647)
+|-+..|+++|||.|| | ..-..+++|+.+=.. .+. + .++.++-|. +=+++|.+-|+-||||+.+
T Consensus 198 le~~~eAl~agaDiIm-L-DNm~~e~~~~av~~l-~~~----~--~~~lEaSGg-------It~~ni~~yA~tGVD~IS~ 261 (280)
T COG0157 198 LEEAEEALEAGADIIM-L-DNMSPEELKEAVKLL-GLA----G--RALLEASGG-------ITLENIREYAETGVDVISV 261 (280)
T ss_pred HHHHHHHHHcCCCEEE-e-cCCCHHHHHHHHHHh-ccC----C--ceEEEEeCC-------CCHHHHHHHhhcCCCEEEe
Confidence 3557788999999999 2 333567777765332 000 0 122223333 3368999999999999976
Q ss_pred ec
Q 006395 320 HA 321 (647)
Q Consensus 320 Ha 321 (647)
=+
T Consensus 262 ga 263 (280)
T COG0157 262 GA 263 (280)
T ss_pred Cc
Confidence 43
No 83
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=63.05 E-value=40 Score=38.52 Aligned_cols=185 Identities=22% Similarity=0.321 Sum_probs=112.6
Q ss_pred HHHHcCCcCch---hhhH---HHHHHHHhHhceeEe---cc---CCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCe
Q 006395 349 WCLAYHKENFA---YEHW---DEILDICNQYDVALS---IG---DGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQ 416 (647)
Q Consensus 349 Wml~~~~ENpl---Y~~F---D~ileI~k~YDVtlS---LG---DGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQ 416 (647)
||+-..|.=|| .++| |+||..-.+..|.+- .| -.|=|=||.=| -|+-|- -.|.++||.
T Consensus 175 YnlPYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpLtgtLvPPsisia---v~ilE~-------Lla~eqGVk 244 (480)
T TIGR01503 175 YNIPYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPLTGTLVPPSISNA---IGIIEG-------LLAAEQGVK 244 (480)
T ss_pred eccccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCCCCCccChHHHHH---HHHHHH-------HHHHHcCCe
Confidence 55555554444 2344 555555555588753 33 34445555322 233332 257899999
Q ss_pred EEeeC---CCCCCCCchHHHHHHHHHhcCC-CC------------cc-ccCccccccCCCchhHHHhHHHHHhhhcccce
Q 006395 417 VMNEG---PGHIPMHKIPENMQKQLEWCNE-AP------------FY-TLGPLTTDIAPGYDHITSAIGAANIGALGTAL 479 (647)
Q Consensus 417 VMIEG---PGHVPl~~I~~nv~lqk~lc~~-AP------------fY-vLGPLvTDIApGYDHItsAIGaA~aa~~Gad~ 479 (647)
-+-=| -||+ ...| +-+..-++++++ .| || -.|+.++|-+-.|-=|+ -|+++|+..||+=
T Consensus 245 sisvgy~Q~Gn~-~QDi-aai~aL~~l~~eYl~~~g~~Dv~i~tV~hqwMG~FP~d~~~A~~lis--~~a~~A~l~gA~K 320 (480)
T TIGR01503 245 NITVGYGQVGNL-TQDI-AALRALEEQTNEYLKAYGYNDVFVTTVFHQWMGGFPEDESKAFGVIS--TATTIAALSGATK 320 (480)
T ss_pred EEEeccccCCCh-HHHH-HHHHHHHHHHHHHHHhCCCCceEEEEEeeeccCCCCCChhhhhhHHH--HHHHHHHHcCCCE
Confidence 88777 3553 2223 234444444432 22 22 35999999998886654 6899999999999
Q ss_pred eeecCchhhcCCCChhHHHHHHHHHHHHHhHhhhhcCCcchhh--HHHHHHHHHhh--cChHHHHhhcCChHHHHh
Q 006395 480 LCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPLAQT--WDDALSKARFE--FRWMDQFALSLDPMTAMS 551 (647)
Q Consensus 480 LCYVTPaEHLgLP~~eDVreGViA~kIAAHaaDlaKg~p~A~~--rD~~mS~AR~~--~dWe~Qf~LalDPe~Ar~ 551 (647)
+=-=||.|-+|.|+.|.=-.|+-++|-++ ++.++.+-... -+.+++.-..| -=-+.-|++. |+|-++.
T Consensus 321 vIvKT~~EA~gIPt~eaN~~~l~~tk~~~---~~l~~q~~~~~~~~~~E~~~i~~Ev~~Ild~Vle~g-~gDl~~g 392 (480)
T TIGR01503 321 VIVKSPHEAIGIPTAEANAAGLKATKQAL---NMLNEQKIPMSKEVETEMALIKAETRCILDKVFELG-DGDLARG 392 (480)
T ss_pred EEecCHHHHcCCCCHHHHHHHHHHHHHHH---HHhccCCCCCchhhhHHHHHHHHHHHHHHHHHHhcC-CCcHHHH
Confidence 99999999999999999999998887765 77666332211 12222222222 2245667776 5555543
No 84
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=62.90 E-value=25 Score=31.06 Aligned_cols=94 Identities=17% Similarity=0.151 Sum_probs=55.7
Q ss_pred HhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCC--CHHHHHHHHHHHHhcCCCEEEEeccccc
Q 006395 248 MWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENL--SWEVFRDTLIEQAEQGVDYFTIHAGVLL 325 (647)
Q Consensus 248 ~~GADtvMDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dl--t~e~~~d~i~eQaeqGVDf~TIHaGv~~ 325 (647)
.+|..+|.||.+.... .......+..=.+|+-+ ....++ .++.+.+.|++..++|- -+-|||-
T Consensus 25 ~~gi~~VI~l~~~~~~-----~~~~~~~~~~~~~~~~D------~~~~~~~~~~~~~~~~i~~~~~~~~-~vlVHC~--- 89 (139)
T cd00127 25 KLGITHVLNVAKEVPN-----ENLFLSDFNYLYVPILD------LPSQDISKYFDEAVDFIDDAREKGG-KVLVHCL--- 89 (139)
T ss_pred HcCCCEEEEcccCCCC-----cccCCCCceEEEEEcee------CCCCChHHHHHHHHHHHHHHHhcCC-cEEEECC---
Confidence 4999999999887654 11111112222223221 111222 24556677777777775 5779992
Q ss_pred cccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhH
Q 006395 326 RYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQ 372 (647)
Q Consensus 326 ~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~ 372 (647)
.| .||.|.+++.|.+.+...+| ++.++..++
T Consensus 90 ------~G-----~~Rs~~~~~~~l~~~~~~~~-----~~a~~~vr~ 120 (139)
T cd00127 90 ------AG-----VSRSATLVIAYLMKTLGLSL-----REAYEFVKS 120 (139)
T ss_pred ------CC-----CchhHHHHHHHHHHHcCCCH-----HHHHHHHHH
Confidence 22 48999999999988876533 555555554
No 85
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=62.62 E-value=67 Score=35.93 Aligned_cols=75 Identities=20% Similarity=0.208 Sum_probs=46.0
Q ss_pred ceeEeeccccCCCCCChHHHHHHHHHHHHhCCCEeeecCC-CC--ChHHHHHHHHhcC-CCc--cccchhhhHHHHhcCc
Q 006395 220 LVKVNANIGNSAVASSIEEEVYKVQWATMWGADTVMDLST-GR--HIHETREWILRNS-AVP--VGTVPIYQALEKVDGI 293 (647)
Q Consensus 220 ~tKVNANIGtS~~~~~ie~EveKl~~A~~~GADtvMDLST-Gg--di~~~R~~Il~~s-pvP--vGTVPIYqA~~k~~g~ 293 (647)
+.+|-++||++.+. ++.++.-+++|+|.|.=-++ |. ++-+..++|.+.. ++| +|+|=-++.+.
T Consensus 216 ~l~V~aai~~~~~~------~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~----- 284 (486)
T PRK05567 216 RLRVGAAVGVGADN------EERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAAR----- 284 (486)
T ss_pred CEEEEeecccCcch------HHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHH-----
Confidence 56788899887532 56666777789997753333 32 3445566776665 455 45554444333
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCEEEE
Q 006395 294 AENLSWEVFRDTLIEQAEQGVDYFTI 319 (647)
Q Consensus 294 ~~dlt~e~~~d~i~eQaeqGVDf~TI 319 (647)
+. .+.|+|++-+
T Consensus 285 ----------~l----~~aGad~i~v 296 (486)
T PRK05567 285 ----------AL----IEAGADAVKV 296 (486)
T ss_pred ----------HH----HHcCCCEEEE
Confidence 32 4579999874
No 86
>PRK08323 phenylhydantoinase; Validated
Probab=62.08 E-value=2.3e+02 Score=30.64 Aligned_cols=67 Identities=21% Similarity=0.215 Sum_probs=36.0
Q ss_pred HHHHHhCCCEeeecCCCCCh---HH----HHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCE
Q 006395 244 QWATMWGADTVMDLSTGRHI---HE----TREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDY 316 (647)
Q Consensus 244 ~~A~~~GADtvMDLSTGgdi---~~----~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGVDf 316 (647)
+.|++.|.-|++|.....+. .+ .++....++.+-+|. +- .+.. +.++.++.+++..+.|++.
T Consensus 76 ~~a~~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~-------~~~~-~~~~~~~~~~~~~~~g~~~ 144 (459)
T PRK08323 76 RAAACGGTTTIIDFALQPKGQSLREALEAWHGKAAGKAVIDYGF---HM-------IITD-WNEVVLDEMPELVEEGITS 144 (459)
T ss_pred HHHHhCCCCEEEeCcCCCCCCChHHHHHHHHHHhccCceEEEEE---EE-------EecC-CcHHHHHHHHHHHHcCCCE
Confidence 57789999999997654332 22 222222222222221 10 0111 1234566777777889887
Q ss_pred EEEec
Q 006395 317 FTIHA 321 (647)
Q Consensus 317 ~TIHa 321 (647)
+.++.
T Consensus 145 ik~~~ 149 (459)
T PRK08323 145 FKLFM 149 (459)
T ss_pred EEEEE
Confidence 77764
No 87
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=62.04 E-value=38 Score=34.74 Aligned_cols=101 Identities=21% Similarity=0.239 Sum_probs=66.9
Q ss_pred HHHHH-HHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCE
Q 006395 238 EEVYK-VQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDY 316 (647)
Q Consensus 238 ~EveK-l~~A~~~GADtvMDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGVDf 316 (647)
+++.. .+.|.+.|||-|-- |..+++..+|+++ +.++ +||+-+ |.+..=|++++++.+.+-.+.|.+-
T Consensus 160 ~~i~~a~~~a~e~GAD~vKt-~~~~~~~~l~~~~-~~~~-----ipV~a~-----GGi~~~~~~~~l~~v~~~~~aGA~G 227 (267)
T PRK07226 160 EVVAHAARVAAELGADIVKT-NYTGDPESFREVV-EGCP-----VPVVIA-----GGPKTDTDREFLEMVRDAMEAGAAG 227 (267)
T ss_pred HHHHHHHHHHHHHCCCEEee-CCCCCHHHHHHHH-HhCC-----CCEEEE-----eCCCCCCHHHHHHHHHHHHHcCCcE
Confidence 45555 48899999999965 4456788887665 4444 455332 4445457899999999999999994
Q ss_pred EEEeccccccccc-cccCcccCccccccHHHHHHH
Q 006395 317 FTIHAGVLLRYIP-LTAKRMTGIVSRGGSIHAKWC 350 (647)
Q Consensus 317 ~TIHaGv~~~~~~-~~~~R~tgIVSRGGSi~a~Wm 350 (647)
+.+=-.|...-=| ....++..+|.+|.|.=.+|=
T Consensus 228 is~gr~i~~~~~p~~~~~~l~~~v~~~~~~~ea~~ 262 (267)
T PRK07226 228 VAVGRNVFQHEDPEAITRAISAVVHEGASVEEALK 262 (267)
T ss_pred EehhhhhhcCCCHHHHHHHHHHHHhCCCCHHHHHH
Confidence 4433333222112 244788888888877766653
No 88
>PRK09206 pyruvate kinase; Provisional
Probab=62.02 E-value=44 Score=37.93 Aligned_cols=95 Identities=21% Similarity=0.148 Sum_probs=60.0
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcC---------CcCc-hhhhH
Q 006395 294 AENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYH---------KENF-AYEHW 363 (647)
Q Consensus 294 ~~dlt~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~---------~ENp-lY~~F 363 (647)
+..||+.|..| |+--+++||||+.+=.==+.+.+.. +..|+...+ =||+ -++++
T Consensus 167 lp~ltekD~~d-i~f~~~~~vD~ia~SFVr~~~Dv~~---------------~r~~l~~~~~~~~~iiaKIEt~eav~nl 230 (470)
T PRK09206 167 LPALAEKDKQD-LIFGCEQGVDFVAASFIRKRSDVLE---------------IREHLKAHGGENIQIISKIENQEGLNNF 230 (470)
T ss_pred CCCCCHHHHHH-HHHHHHcCCCEEEEcCCCCHHHHHH---------------HHHHHHHcCCCCceEEEEECCHHHHHhH
Confidence 35688898877 6888999999997754212222221 122333222 2332 36788
Q ss_pred HHHHHHH-----hHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEe
Q 006395 364 DEILDIC-----NQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMN 419 (647)
Q Consensus 364 D~ileI~-----k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMI 419 (647)
|+||+.+ .+.|..+++| -..+.+ .+-++.+.|+++|+.|++
T Consensus 231 deIl~~~DgImVaRGDLgvelg-------------~e~vp~--~qk~ii~~~~~~gkpvI~ 276 (470)
T PRK09206 231 DEILEASDGIMVARGDLGVEIP-------------VEEVIF--AQKMMIEKCNRARKVVIT 276 (470)
T ss_pred HHHHHhCCEEEECcchhhhhcC-------------HHHHHH--HHHHHHHHHHHcCCCEEE
Confidence 8888873 3456666666 223332 467889999999999887
No 89
>TIGR03586 PseI pseudaminic acid synthase.
Probab=61.83 E-value=1.1e+02 Score=33.04 Aligned_cols=180 Identities=16% Similarity=0.162 Sum_probs=106.2
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEecccccccccc-ccCcccCccccccHH--HHHHHHHcCCcCchhhhHHHHHHHHhHhc
Q 006395 298 SWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPL-TAKRMTGIVSRGGSI--HAKWCLAYHKENFAYEHWDEILDICNQYD 374 (647)
Q Consensus 298 t~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~-~~~R~tgIVSRGGSi--~a~Wml~~~~ENplY~~FD~ileI~k~YD 374 (647)
+.|..++.|..-++.|.|.+-+.. .+.+.+-. ...+ ...+++|.. ...|=+....|-+ ++.|-+|.+.|++++
T Consensus 15 ~~~~A~~lI~~A~~aGAdavKFQ~-~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~el~-~e~~~~L~~~~~~~G 90 (327)
T TIGR03586 15 SLERALAMIEAAKAAGADAIKLQT-YTPDTITLDSDRP--EFIIKGGLWDGRTLYDLYQEAHTP-WEWHKELFERAKELG 90 (327)
T ss_pred hHHHHHHHHHHHHHhCCCEEEeee-ccHHHhhcccccc--ccccccCCcCCccHHHHHHHhhCC-HHHHHHHHHHHHHhC
Confidence 467888899999999999766654 23333221 1111 122233211 1111111223433 577788999999999
Q ss_pred eeEeccCCCCCCCccCCCcHHHHHHHHHH--------------HHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHH-
Q 006395 375 VALSIGDGLRPGSIYDANDTAQFAELLTQ--------------GELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLE- 439 (647)
Q Consensus 375 VtlSLGDGLRPG~i~DA~D~AQ~~EL~~L--------------GEL~krA~e~gVQVMIEGPGHVPl~~I~~nv~lqk~- 439 (647)
+.+ +...-|..++.+|..+ -.|.+..-+.|.-|++-=.+ --+++|..-+..-++
T Consensus 91 i~~----------~stpfd~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvilstG~-~t~~Ei~~Av~~i~~~ 159 (327)
T TIGR03586 91 LTI----------FSSPFDETAVDFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMSTGI-ATLEEIQEAVEACREA 159 (327)
T ss_pred CcE----------EEccCCHHHHHHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEECCC-CCHHHHHHHHHHHHHC
Confidence 977 4566777788877777 67889999999999998766 588888888776543
Q ss_pred ------hcCC-----CCccccCc--c-----ccccCCCc-hhHHHhHHHHHhhhccccee-eecCchhhcCCC
Q 006395 440 ------WCNE-----APFYTLGP--L-----TTDIAPGY-DHITSAIGAANIGALGTALL-CYVTPKEHLGLP 492 (647)
Q Consensus 440 ------lc~~-----APfYvLGP--L-----vTDIApGY-DHItsAIGaA~aa~~Gad~L-CYVTPaEHLgLP 492 (647)
+||- +|+..+-= + .++.--|| ||.++.-=+..|.++||+++ .-.||...|.-|
T Consensus 160 g~~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f~~pVG~SDHt~G~~~~~aAva~GA~iIEkH~tld~~l~G~ 232 (327)
T TIGR03586 160 GCKDLVLLKCTSSYPAPLEDANLRTIPDLAERFNVPVGLSDHTLGILAPVAAVALGACVIEKHFTLDRSDGGV 232 (327)
T ss_pred CCCcEEEEecCCCCCCCcccCCHHHHHHHHHHhCCCEEeeCCCCchHHHHHHHHcCCCEEEeCCChhhcCCCC
Confidence 2221 11111100 0 12334455 77665433444556788754 445666665444
No 90
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=61.61 E-value=2.6e+02 Score=32.21 Aligned_cols=45 Identities=20% Similarity=0.128 Sum_probs=32.8
Q ss_pred ceEeecCC-ceeEeeccccCCCCCChHHHHHHHHHHHHhCCCEeeecCCC
Q 006395 212 PMIVGRNF-LVKVNANIGNSAVASSIEEEVYKVQWATMWGADTVMDLSTG 260 (647)
Q Consensus 212 p~~IG~g~-~tKVNANIGtS~~~~~ie~EveKl~~A~~~GADtvMDLSTG 260 (647)
+.-||... .+||=|-|=..+.. ++-++++..-++.|||- .|+-.+
T Consensus 142 ~~~i~~~~p~~~v~aEI~~a~~l---~~i~~~A~~~~~~GADI-IDIG~~ 187 (499)
T TIGR00284 142 SLKIPLKPPPLRVVAEIPPTVAE---DGIEGLAARMERDGADM-VALGTG 187 (499)
T ss_pred CcCCCCCCCCeEEEEEEcCCcch---HHHHHHHHHHHHCCCCE-EEECCC
Confidence 45577776 78888888655543 66688888889999984 587444
No 91
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=61.58 E-value=60 Score=31.80 Aligned_cols=68 Identities=10% Similarity=0.090 Sum_probs=50.4
Q ss_pred hHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCch
Q 006395 362 HWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKI 430 (647)
Q Consensus 362 ~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I 430 (647)
+.+++.+++++|++.++.-..+... ..+..+...-+-+..+-+..+.|.+.|+.++|--+|.++-+..
T Consensus 46 ~~~~l~~~l~~~gl~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~a~~lg~~~vv~~~g~~~~~~~ 113 (274)
T COG1082 46 ELAELKELLADYGLEITSLAPFSNN-LLSPDEEEREEALEELKRAIELAKELGAKVVVVHPGLGAGADD 113 (274)
T ss_pred hHHHHHHHHHHcCcEEEeecccCCC-cCCCchhhHHHHHHHHHHHHHHHHHcCCCeEEeecccCCcCCC
Confidence 3799999999999999998888876 4444444332334444448888999999999988887766544
No 92
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=61.10 E-value=2.1e+02 Score=29.68 Aligned_cols=87 Identities=16% Similarity=0.129 Sum_probs=45.4
Q ss_pred CceeEeeccccCCCCCChHHHHHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCC
Q 006395 219 FLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLS 298 (647)
Q Consensus 219 ~~tKVNANIGtS~~~~~ie~EveKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt 298 (647)
-++.++++++. .+.++-++.++.+.+.|-+ .+++-.|++.++..+.|- ..-=.+|.++| ...++ ...+
T Consensus 122 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~Gf~-~iKik~g~~~~~d~~~v~-~lr~~~g~~~l---~vD~n---~~~~ 189 (316)
T cd03319 122 RPLETDYTISI----DTPEAMAAAAKKAAKRGFP-LLKIKLGGDLEDDIERIR-AIREAAPDARL---RVDAN---QGWT 189 (316)
T ss_pred CCceeEEEEeC----CCHHHHHHHHHHHHHcCCC-EEEEEeCCChhhHHHHHH-HHHHhCCCCeE---EEeCC---CCcC
Confidence 34445555542 3556656777777788954 456666766544332221 11000112332 11222 2355
Q ss_pred HHHHHHHHHHHHhcCCCEE
Q 006395 299 WEVFRDTLIEQAEQGVDYF 317 (647)
Q Consensus 299 ~e~~~d~i~eQaeqGVDf~ 317 (647)
.++.++.+..-.+.|++|+
T Consensus 190 ~~~A~~~~~~l~~~~l~~i 208 (316)
T cd03319 190 PEEAVELLRELAELGVELI 208 (316)
T ss_pred HHHHHHHHHHHHhcCCCEE
Confidence 6777777666667788888
No 93
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=60.63 E-value=26 Score=35.51 Aligned_cols=117 Identities=20% Similarity=0.258 Sum_probs=78.7
Q ss_pred ceeEeeccccCCCCCChHHHHHHHHHHHHhCCCE---eeecC--CCCChHHHHHHHHhcCCCccccchhhhHHHHhcCcc
Q 006395 220 LVKVNANIGNSAVASSIEEEVYKVQWATMWGADT---VMDLS--TGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIA 294 (647)
Q Consensus 220 ~tKVNANIGtS~~~~~ie~EveKl~~A~~~GADt---vMDLS--TGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~ 294 (647)
.|||..=||=..-....+.-+.-++.|++.|||- ||+++ ..++.+.+++.|-+-...- +.+|+.=-++.
T Consensus 53 ~v~v~tVigFP~G~~~~~~K~~E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~-~g~~lKvIlE~----- 126 (211)
T TIGR00126 53 EVRICTVVGFPLGASTTDVKLYETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEAC-AGVLLKVIIET----- 126 (211)
T ss_pred CCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHc-CCCeEEEEEec-----
Confidence 5788777877777778888888899999999976 46665 3578888888776433211 12232111111
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEecc-----cccccccc----ccCcccCcccccc
Q 006395 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAG-----VLLRYIPL----TAKRMTGIVSRGG 343 (647)
Q Consensus 295 ~dlt~e~~~d~i~eQaeqGVDf~TIHaG-----v~~~~~~~----~~~R~tgIVSRGG 343 (647)
-.|+.+++....+--++.|+||+=.=.| .+.+.+.. ..+| .+|.-.||
T Consensus 127 ~~L~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~~~-v~IKaaGG 183 (211)
T TIGR00126 127 GLLTDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVGDT-IGVKASGG 183 (211)
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhccC-CeEEEeCC
Confidence 2378899999999999999999966544 44444442 1233 57877777
No 94
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=60.33 E-value=48 Score=33.17 Aligned_cols=81 Identities=10% Similarity=-0.020 Sum_probs=53.8
Q ss_pred hhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHH-HHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHH
Q 006395 360 YEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAE-LLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQL 438 (647)
Q Consensus 360 Y~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~E-L~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~nv~lqk 438 (647)
.+.|.+.++.|++.++..=.=.|.+++. +..++..+.. ...|.+|.+.|.++||.+.+|-=..-.+.....-+++.+
T Consensus 98 ~~~~~~~i~~a~~lG~~~i~~~~~~~~~--~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~~~~~~~~~~~~~~ll~ 175 (283)
T PRK13209 98 LEIMRKAIQLAQDLGIRVIQLAGYDVYY--EQANNETRRRFIDGLKESVELASRASVTLAFEIMDTPFMNSISKALGYAH 175 (283)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccccc--cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeecCCcccCCHHHHHHHHH
Confidence 5678999999999997653222333221 1122333222 236788999999999999999744446667777777777
Q ss_pred HhcC
Q 006395 439 EWCN 442 (647)
Q Consensus 439 ~lc~ 442 (647)
++.+
T Consensus 176 ~v~~ 179 (283)
T PRK13209 176 YLNS 179 (283)
T ss_pred HhCC
Confidence 7644
No 95
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=60.25 E-value=1.1e+02 Score=34.06 Aligned_cols=51 Identities=20% Similarity=0.182 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCccc--cccCCC
Q 006395 402 TQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLT--TDIAPG 459 (647)
Q Consensus 402 ~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~nv~lqk~lc~~APfYvLGPLv--TDIApG 459 (647)
.+-++.+.|.+.+|.|+-+|-=+-| -+..|-|.-||-+.++|=+. ||-+||
T Consensus 315 ~i~~~~~~~~~~~vpviadGGi~~~-------~di~kAla~GA~~V~~G~~~a~~~e~pg 367 (450)
T TIGR01302 315 AVYDVAEYAAQSGIPVIADGGIRYS-------GDIVKALAAGADAVMLGSLLAGTTESPG 367 (450)
T ss_pred HHHHHHHHHhhcCCeEEEeCCCCCH-------HHHHHHHHcCCCEEEECchhhcCCcCCC
Confidence 4455566677889999999843333 34566677899999999876 566776
No 96
>PRK07094 biotin synthase; Provisional
Probab=60.08 E-value=1.3e+02 Score=31.16 Aligned_cols=28 Identities=21% Similarity=0.190 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEeccc
Q 006395 296 NLSWEVFRDTLIEQAEQGVDYFTIHAGV 323 (647)
Q Consensus 296 dlt~e~~~d~i~eQaeqGVDf~TIHaGv 323 (647)
.++.|++.+.+++..+.||..+.+..|-
T Consensus 69 ~ls~eei~~~~~~~~~~g~~~i~l~gG~ 96 (323)
T PRK07094 69 RLSPEEILECAKKAYELGYRTIVLQSGE 96 (323)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCC
Confidence 4799999999999899999999998774
No 97
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=59.98 E-value=1.9e+02 Score=28.84 Aligned_cols=114 Identities=10% Similarity=0.103 Sum_probs=72.8
Q ss_pred HHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccC
Q 006395 302 FRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGD 381 (647)
Q Consensus 302 ~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlSLGD 381 (647)
+-+.|++.++.|++.+-++++--+..... ..-....+++-+.+++|+|.+|.--
T Consensus 12 ~~~~~~~~~~~G~~~vel~~~~~~~~~~~--------------------------~~~~~~~~~l~~~~~~~gl~ls~h~ 65 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLFLGNPRSWKGV--------------------------RLSEETAEKFKEALKENNIDVSVHA 65 (273)
T ss_pred HhHHHHHHHHcCCCEEEEECCCCCCCCCC--------------------------CCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 44778888999999999977643322111 1224568889999999999998621
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchH----HHHHHHHHhcC
Q 006395 382 GLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIP----ENMQKQLEWCN 442 (647)
Q Consensus 382 GLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~----~nv~lqk~lc~ 442 (647)
--...+++...+..=..+..+-+..+.|.+.|+.+++==||..+-..-+ ..++.-+++|.
T Consensus 66 -p~~~nl~s~d~~~r~~~~~~l~~~i~~A~~lGa~~vv~h~g~~~~~~~e~~~~~~~~~l~~l~~ 129 (273)
T smart00518 66 -PYLINLASPDKEKVEKSIERLIDEIKRCEELGIKALVFHPGSYLKQSKEEALNRIIESLNEVID 129 (273)
T ss_pred -CceecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHHHHh
Confidence 1123455543333334466777888888899998887667766543333 33335555665
No 98
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=59.21 E-value=2.3e+02 Score=29.57 Aligned_cols=175 Identities=16% Similarity=0.125 Sum_probs=97.5
Q ss_pred ChHHHHHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCC
Q 006395 235 SIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGV 314 (647)
Q Consensus 235 ~ie~EveKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGV 314 (647)
+.+-|..=++.|.++|+.-+.---++..+.++|+. .+-|+ -+-+|- ..+++.+.+.+++-.+.|+
T Consensus 79 ~~~~~~~la~aa~~~g~~~~~~~~~~~~~~~i~~~----~~~~~-~~ql~~----------~~~~~~~~~~i~~~~~~g~ 143 (299)
T cd02809 79 HPDGELATARAAAAAGIPFTLSTVSTTSLEEVAAA----APGPR-WFQLYV----------PRDREITEDLLRRAEAAGY 143 (299)
T ss_pred CchHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHh----cCCCe-EEEEee----------cCCHHHHHHHHHHHHHcCC
Confidence 45566777888899998655432234456666644 22111 122211 1256777777777677899
Q ss_pred CEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcH
Q 006395 315 DYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDT 394 (647)
Q Consensus 315 Df~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~ 394 (647)
|.+-+|.+.... ..| ..++.|-+|.++.++.+++..-
T Consensus 144 ~~i~l~~~~p~~-----~~~--------------------------~~~~~i~~l~~~~~~pvivK~v------------ 180 (299)
T cd02809 144 KALVLTVDTPVL-----GRR--------------------------LTWDDLAWLRSQWKGPLILKGI------------ 180 (299)
T ss_pred CEEEEecCCCCC-----CCC--------------------------CCHHHHHHHHHhcCCCEEEeec------------
Confidence 999999986531 122 2446666777777888887741
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEEe-eC-CCCCCC---CchHHHHHHHHHhcCCCCccccCccccccCCCchhHHHhHHH
Q 006395 395 AQFAELLTQGELTRRAWDKDVQVMN-EG-PGHIPM---HKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGA 469 (647)
Q Consensus 395 AQ~~EL~~LGEL~krA~e~gVQVMI-EG-PGHVPl---~~I~~nv~lqk~lc~~APfYvLGPLvTDIApGYDHItsAIGa 469 (647)
.-.+.+++|.++||..++ .| .||..- ..+..--+..+.+..+.|++.-|= |.-|. ++.-
T Consensus 181 -------~s~~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GG----I~~~~-d~~k---- 244 (299)
T cd02809 181 -------LTPEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGG----IRRGT-DVLK---- 244 (299)
T ss_pred -------CCHHHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCC----CCCHH-HHHH----
Confidence 113558899999998664 33 245321 112222222222223456655553 33332 2222
Q ss_pred HHhhhcccceeeecCc
Q 006395 470 ANIGALGTALLCYVTP 485 (647)
Q Consensus 470 A~aa~~Gad~LCYVTP 485 (647)
+-..|||....-||
T Consensus 245 --al~lGAd~V~ig~~ 258 (299)
T cd02809 245 --ALALGADAVLIGRP 258 (299)
T ss_pred --HHHcCCCEEEEcHH
Confidence 22479998887663
No 99
>PRK12677 xylose isomerase; Provisional
Probab=58.90 E-value=30 Score=37.76 Aligned_cols=82 Identities=18% Similarity=0.199 Sum_probs=54.4
Q ss_pred hhhhHHHHHHHHhHhcee-EeccCCCCCCCccC-CCcHHHHHHH--HHHHHHHHHHHhcC--CeEEeeC-C----CCCCC
Q 006395 359 AYEHWDEILDICNQYDVA-LSIGDGLRPGSIYD-ANDTAQFAEL--LTQGELTRRAWDKD--VQVMNEG-P----GHIPM 427 (647)
Q Consensus 359 lY~~FD~ileI~k~YDVt-lSLGDGLRPG~i~D-A~D~AQ~~EL--~~LGEL~krA~e~g--VQVMIEG-P----GHVPl 427 (647)
-.+++-+-+|++++.++. +.+=-| |.|.-.+ +.|..+..+. .-|.+|.+.|.++| |++.||= | +++-+
T Consensus 112 Ai~~~~r~IdlA~eLGa~~Vvv~~G-~~g~~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~laIEpkp~ep~~~~~l 190 (384)
T PRK12677 112 ALRKVLRNIDLAAELGAKTYVMWGG-REGAEYDAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFALEPKPNEPRGDILL 190 (384)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeeC-CCCccCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEccCCCCCCCCeee
Confidence 477889999999999863 343323 5555332 2343333333 45789999999955 9999996 2 24566
Q ss_pred CchHHHHHHHHHhc
Q 006395 428 HKIPENMQKQLEWC 441 (647)
Q Consensus 428 ~~I~~nv~lqk~lc 441 (647)
+.+..-..+.+++=
T Consensus 191 ~t~~~al~li~~lg 204 (384)
T PRK12677 191 PTVGHALAFIATLE 204 (384)
T ss_pred CCHHHHHHHHHHhC
Confidence 77777777777653
No 100
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=58.89 E-value=30 Score=34.14 Aligned_cols=162 Identities=20% Similarity=0.230 Sum_probs=93.7
Q ss_pred CCChHHHHHHHHHHHHhCCCEe---eecCCCCChHHHHHHH---HhcCCCccccchhhhHHHH--hcCccCCCCHHHHHH
Q 006395 233 ASSIEEEVYKVQWATMWGADTV---MDLSTGRHIHETREWI---LRNSAVPVGTVPIYQALEK--VDGIAENLSWEVFRD 304 (647)
Q Consensus 233 ~~~ie~EveKl~~A~~~GADtv---MDLSTGgdi~~~R~~I---l~~spvPvGTVPIYqA~~k--~~g~~~dlt~e~~~d 304 (647)
.+++++-++.++.+...|||.| +|+..+.+...+.+.+ .++.++| +-=.+.. -||. -.++.+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~l~~lr~~~~~p-----iI~T~R~~~eGG~-~~~~~~~~~~ 79 (224)
T PF01487_consen 6 GSTLEELLAELEEAESSGADAVELRLDYLENDSAEDISEQLAELRRSLDLP-----IIFTVRTKEEGGR-FQGSEEEYLE 79 (224)
T ss_dssp -SSHHHHHHHHHHHHHTTTSEEEEEGGGSTTTSHHHHHHHHHHHHHHCTSE-----EEEE--BGGGTSS-BSS-HHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEeccccccChHHHHHHHHHHHHhCCCC-----EEEEecccccCCC-CcCCHHHHHH
Confidence 4566777777887777799998 8998866666555544 3344444 3333332 1555 4899999999
Q ss_pred HHHHHHhcCCCEEEEeccccccccc----cccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEecc
Q 006395 305 TLIEQAEQGVDYFTIHAGVLLRYIP----LTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIG 380 (647)
Q Consensus 305 ~i~eQaeqGVDf~TIHaGv~~~~~~----~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlSLG 380 (647)
.++.-++.|+||+.|=.-...+.+. ...++.-=|+|. |+-...|-.+...++++-+++++.
T Consensus 80 ll~~~~~~~~d~iDiE~~~~~~~~~~~~~~~~~~~~iI~S~----------H~f~~tp~~~~l~~~~~~~~~~ga----- 144 (224)
T PF01487_consen 80 LLERAIRLGPDYIDIELDLFPDDLKSRLAARKGGTKIILSY----------HDFEKTPSWEELIELLEEMQELGA----- 144 (224)
T ss_dssp HHHHHHHHTSSEEEEEGGCCHHHHHHHHHHHHTTSEEEEEE----------EESS---THHHHHHHHHHHHHTT------
T ss_pred HHHHHHHcCCCEEEEEcccchhHHHHHHHHhhCCCeEEEEe----------ccCCCCCCHHHHHHHHHHHHhcCC-----
Confidence 9999999999999997764444332 222333335553 345777777777777777776441
Q ss_pred CCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhc-CCeEEee
Q 006395 381 DGLRPGSIYDANDTAQFAELLTQGELTRRAWDK-DVQVMNE 420 (647)
Q Consensus 381 DGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~-gVQVMIE 420 (647)
|-.+-=+. +++... ...|-++++.+.+. +..++.=
T Consensus 145 divKia~~--~~~~~D---~~~l~~~~~~~~~~~~~p~i~~ 180 (224)
T PF01487_consen 145 DIVKIAVM--ANSPED---VLRLLRFTKEFREEPDIPVIAI 180 (224)
T ss_dssp SEEEEEEE---SSHHH---HHHHHHHHHHHHHHTSSEEEEE
T ss_pred CeEEEEec--cCCHHH---HHHHHHHHHHHhhccCCcEEEE
Confidence 44433222 233333 33444555555543 5555443
No 101
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=58.56 E-value=60 Score=34.30 Aligned_cols=85 Identities=16% Similarity=0.176 Sum_probs=43.4
Q ss_pred EeeccccCCCCCChHHHHHHHHHHHHhCCCEee-ecCC--------CCChHH----HHHHHHhcCCCccccchhhhHHHH
Q 006395 223 VNANIGNSAVASSIEEEVYKVQWATMWGADTVM-DLST--------GRHIHE----TREWILRNSAVPVGTVPIYQALEK 289 (647)
Q Consensus 223 VNANIGtS~~~~~ie~EveKl~~A~~~GADtvM-DLST--------Ggdi~~----~R~~Il~~spvPvGTVPIYqA~~k 289 (647)
|-+||+- .+.++-.+=++.+.++|||.|. .+|. |.+..+ +=++|-+++++||. .|
T Consensus 104 vi~sI~g----~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~--------vK 171 (334)
T PRK07565 104 VIASLNG----SSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVA--------VK 171 (334)
T ss_pred EEEEecc----CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEE--------EE
Confidence 3446633 2344545566677788999883 2332 333322 22444444444332 12
Q ss_pred hcCccCCCCHHHHHHHHHHHHhcCCCEEEEecccc
Q 006395 290 VDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVL 324 (647)
Q Consensus 290 ~~g~~~dlt~e~~~d~i~eQaeqGVDf~TIHaGv~ 324 (647)
... + ++++.+....-.+.|||++++|-.+.
T Consensus 172 l~p---~--~~~~~~~a~~l~~~G~dgI~~~n~~~ 201 (334)
T PRK07565 172 LSP---Y--FSNLANMAKRLDAAGADGLVLFNRFY 201 (334)
T ss_pred eCC---C--chhHHHHHHHHHHcCCCeEEEECCcC
Confidence 111 1 12333444433467999999997754
No 102
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=58.22 E-value=59 Score=32.40 Aligned_cols=78 Identities=10% Similarity=0.050 Sum_probs=50.6
Q ss_pred hhhHHHHHHHHhHhcee-EeccCCCCCCCccCCCcHHHHHHH-HHHHHHHHHHHhcCCeEEeeCCCC--C---CCCchHH
Q 006395 360 YEHWDEILDICNQYDVA-LSIGDGLRPGSIYDANDTAQFAEL-LTQGELTRRAWDKDVQVMNEGPGH--I---PMHKIPE 432 (647)
Q Consensus 360 Y~~FD~ileI~k~YDVt-lSLGDGLRPG~i~DA~D~AQ~~EL-~~LGEL~krA~e~gVQVMIEGPGH--V---Pl~~I~~ 432 (647)
-+++++.+++|++.++. +.+--|-.|+. -.++..+..+ ..|.+|.+.|.++||++.+|--+| . .++-.+.
T Consensus 84 ~~~~~~~i~~a~~lga~~i~~~~g~~~~~---~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~~~~~~~~~~ 160 (258)
T PRK09997 84 RDGVAAAIRYARALGNKKINCLVGKTPAG---FSSEQIHATLVENLRYAANMLMKEDILLLIEPINHFDIPGFHLTGTRQ 160 (258)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcCCCCCccCCHHH
Confidence 47799999999999996 33333323322 2223223333 477999999999999999996444 2 3455555
Q ss_pred HHHHHHHh
Q 006395 433 NMQKQLEW 440 (647)
Q Consensus 433 nv~lqk~l 440 (647)
-.++.+++
T Consensus 161 ~~~ll~~v 168 (258)
T PRK09997 161 ALKLIDDV 168 (258)
T ss_pred HHHHHHHh
Confidence 55555553
No 103
>PTZ00293 thymidine kinase; Provisional
Probab=57.88 E-value=23 Score=36.19 Aligned_cols=89 Identities=17% Similarity=0.141 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccccccccccccCcc-c--CccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhcee
Q 006395 300 EVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRM-T--GIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVA 376 (647)
Q Consensus 300 e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~-t--gIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVt 376 (647)
.+|+..+.+.-..|-..+.+-. ..+.|. . -||||-|..+-+... +...++.+..+.|||.
T Consensus 19 teLLr~i~~y~~ag~kv~~~kp--------~~DtR~~~~~~I~Sh~g~~~~a~~v---------~~~~e~~~~~~~~dvI 81 (211)
T PTZ00293 19 TELMRLVKRFTYSEKKCVVIKY--------SKDTRYSDEQNISSHDKQMLKAIKV---------SKLKEVLETAKNYDVI 81 (211)
T ss_pred HHHHHHHHHHHHcCCceEEEEe--------cccccCCCCCcEEecCCCcceeEEc---------CCHHHHHHhccCCCEE
Confidence 4566677777777776665533 245565 1 289998865544222 2223334444778887
Q ss_pred EeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeC
Q 006395 377 LSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEG 421 (647)
Q Consensus 377 lSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEG 421 (647)
+ -|++||-+ .+-+|++.+...|+.|++=|
T Consensus 82 ~--------------IDEaQFf~--~i~~~~~~l~~~g~~VivaG 110 (211)
T PTZ00293 82 A--------------IDEGQFFP--DLVEFSEAAANLGKIVIVAA 110 (211)
T ss_pred E--------------EEchHhhH--hHHHHHHHHHHCCCeEEEEe
Confidence 5 59999964 57788999999999999988
No 104
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=57.67 E-value=84 Score=34.33 Aligned_cols=116 Identities=15% Similarity=0.140 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeE
Q 006395 298 SWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVAL 377 (647)
Q Consensus 298 t~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtl 377 (647)
+.+.++++-++-.+.||.|+-- |. ..+|--. .| -++.+ ++.+..|-++|+++++.+
T Consensus 130 ~~~~~~~~A~~lk~~g~~~~r~--~~-------~kpRtsp----~~----------f~g~~-~e~l~~L~~~~~~~Gl~~ 185 (360)
T PRK12595 130 SYEQVEAVAKALKAKGLKLLRG--GA-------FKPRTSP----YD----------FQGLG-VEGLKILKQVADEYGLAV 185 (360)
T ss_pred CHHHHHHHHHHHHHcCCcEEEc--cc-------cCCCCCC----cc----------ccCCC-HHHHHHHHHHHHHcCCCE
Confidence 4677777777777889887751 11 1133211 11 23333 588999999999999976
Q ss_pred eccCCCCCCCccCCCcHHHHHHHHH-------------HHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHH-----
Q 006395 378 SIGDGLRPGSIYDANDTAQFAELLT-------------QGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLE----- 439 (647)
Q Consensus 378 SLGDGLRPG~i~DA~D~AQ~~EL~~-------------LGEL~krA~e~gVQVMIEGPGHVPl~~I~~nv~lqk~----- 439 (647)
+.+..|..|+.+|.. .-+|.+.+-+.|.-|++.=+=+.-+.+|..-++.-.+
T Consensus 186 ----------~t~v~d~~~~~~l~~~vd~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~ 255 (360)
T PRK12595 186 ----------ISEIVNPADVEVALDYVDVIQIGARNMQNFELLKAAGRVNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQ 255 (360)
T ss_pred ----------EEeeCCHHHHHHHHHhCCeEEECcccccCHHHHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCC
Confidence 455666666666643 4578899999999999998877888888877766543
Q ss_pred --hcC-CCCcc
Q 006395 440 --WCN-EAPFY 447 (647)
Q Consensus 440 --lc~-~APfY 447 (647)
||| +.-+|
T Consensus 256 i~L~erg~s~y 266 (360)
T PRK12595 256 IILCERGIRTY 266 (360)
T ss_pred EEEECCccCCC
Confidence 676 54444
No 105
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=57.65 E-value=5.2 Score=44.39 Aligned_cols=154 Identities=16% Similarity=0.179 Sum_probs=90.1
Q ss_pred HHHHHHhCCCEeeecCCC-----------CChHHHHHHHHhc--CCCcc-ccchhhh-HHHHhcCccCCCCHHHHHHHHH
Q 006395 243 VQWATMWGADTVMDLSTG-----------RHIHETREWILRN--SAVPV-GTVPIYQ-ALEKVDGIAENLSWEVFRDTLI 307 (647)
Q Consensus 243 l~~A~~~GADtvMDLSTG-----------gdi~~~R~~Il~~--spvPv-GTVPIYq-A~~k~~g~~~dlt~e~~~d~i~ 307 (647)
+..|...||+|++=.+.. .++.++|+.+-+. ...|+ ---| |- -+.--+..+-+.+.+.|.+.|+
T Consensus 147 ~~~a~~~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~Hap-YlINLASpd~e~rekSv~~~~~eL~ 225 (413)
T PTZ00372 147 PINAYNIAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGS-YLINLANPDKEKREKSYDAFLDDLQ 225 (413)
T ss_pred HHHHHHcCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecC-ceecCCCCCHHHHHHHHHHHHHHHH
Confidence 478999999999854332 3556666666544 11111 1223 22 0111112233456788999999
Q ss_pred HHHhcCCCEEEEecccccccc------ccccCcccCccccccHHHHHHHHHc--CCcCchhhhHHHHHHHHhHh------
Q 006395 308 EQAEQGVDYFTIHAGVLLRYI------PLTAKRMTGIVSRGGSIHAKWCLAY--HKENFAYEHWDEILDICNQY------ 373 (647)
Q Consensus 308 eQaeqGVDf~TIHaGv~~~~~------~~~~~R~tgIVSRGGSi~a~Wml~~--~~ENplY~~FD~ileI~k~Y------ 373 (647)
.-.+-|++|+++|.|-....- .....-+--+.++... ...++.| ++.|.+...|++|.+|+..-
T Consensus 226 rA~~LGa~~VV~HPGs~~~~~~~ee~i~~i~e~L~~~la~~~g--V~IlLENmag~g~~lG~~~eeL~~Iid~v~~~~rl 303 (413)
T PTZ00372 226 RCEQLGIKLYNFHPGSTVGQCSKEEGIKNIADCINKAHEETKS--VIIVLENTAGQKNSVGSKFEDLRDIIALVEDKSRV 303 (413)
T ss_pred HHHHcCCCEEEECCCcCCCCCCHHHHHHHHHHHHHHHHhCcCC--CEEEEecCCCCCCcccCCHHHHHHHHHhcCCcCCe
Confidence 999999999999999753211 1111001011222222 2245554 45788888898888888753
Q ss_pred ceeEeccCCCCCCCccCCCcHHHHHHHH
Q 006395 374 DVALSIGDGLRPGSIYDANDTAQFAELL 401 (647)
Q Consensus 374 DVtlSLGDGLRPG~i~DA~D~AQ~~EL~ 401 (647)
.|+|=.+-.+-.| +|-.+...+.+++
T Consensus 304 GvCLDTcHafaAG--ydl~t~e~~~~~l 329 (413)
T PTZ00372 304 GVCLDTCHLFAAG--YDIRTKESFDKVM 329 (413)
T ss_pred EEEEEHHHHHhcC--CCCCcHHHHHHHH
Confidence 3777777766666 6666656666554
No 106
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=57.14 E-value=55 Score=32.35 Aligned_cols=110 Identities=16% Similarity=0.186 Sum_probs=59.9
Q ss_pred HHHHHHHhCCCEeeecCCC--CChHHHHHHHHhcCC--CccccchhhhHHH----Hh--cCccCCCCHHHHHHHHHHHHh
Q 006395 242 KVQWATMWGADTVMDLSTG--RHIHETREWILRNSA--VPVGTVPIYQALE----KV--DGIAENLSWEVFRDTLIEQAE 311 (647)
Q Consensus 242 Kl~~A~~~GADtvMDLSTG--gdi~~~R~~Il~~sp--vPvGTVPIYqA~~----k~--~g~~~dlt~e~~~d~i~eQae 311 (647)
.+..+..+|+|.|+ |.|. .|.+.+++.+ +.-+ ..+-+|-++.-+. ++ .+- .+.+..+..+.+.+-.+
T Consensus 88 d~~~~~~~G~~~vi-lg~~~l~~~~~~~~~~-~~~~~~~i~vsld~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~ 164 (232)
T TIGR03572 88 DAKKLLSLGADKVS-INTAALENPDLIEEAA-RRFGSQCVVVSIDVKKELDGSDYKVYSDNG-RRATGRDPVEWAREAEQ 164 (232)
T ss_pred HHHHHHHcCCCEEE-EChhHhcCHHHHHHHH-HHcCCceEEEEEEeccCCCCCcEEEEECCC-cccCCCCHHHHHHHHHH
Confidence 34445677999773 4433 4444444443 4322 1233444443210 00 010 12233445677777789
Q ss_pred cCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCC
Q 006395 312 QGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLR 384 (647)
Q Consensus 312 qGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlSLGDGLR 384 (647)
.|+|++++|. +++.|. .+.| +|+.+-+|++.-++.+-.+-|+|
T Consensus 165 ~G~d~i~i~~-----------------i~~~g~----------~~g~---~~~~~~~i~~~~~ipvia~GGi~ 207 (232)
T TIGR03572 165 LGAGEILLNS-----------------IDRDGT----------MKGY---DLELIKTVSDAVSIPVIALGGAG 207 (232)
T ss_pred cCCCEEEEeC-----------------CCccCC----------cCCC---CHHHHHHHHhhCCCCEEEECCCC
Confidence 9999999996 222222 3334 36667777777788888887775
No 107
>PRK01060 endonuclease IV; Provisional
Probab=56.86 E-value=18 Score=36.15 Aligned_cols=79 Identities=18% Similarity=0.189 Sum_probs=47.6
Q ss_pred HHHHHHhCCCEeeecCCC------------CChHHHHHHHHhcCCCccccc----hhhhHHHHhcCccCCCCHHHHHHHH
Q 006395 243 VQWATMWGADTVMDLSTG------------RHIHETREWILRNSAVPVGTV----PIYQALEKVDGIAENLSWEVFRDTL 306 (647)
Q Consensus 243 l~~A~~~GADtvMDLSTG------------gdi~~~R~~Il~~spvPvGTV----PIYqA~~k~~g~~~dlt~e~~~d~i 306 (647)
++++-+.|.|.| +|..+ .++.++|+.+ +...+.++++ |.+--+........+-+.+.+.+.|
T Consensus 18 l~~~~~~G~d~v-El~~~~p~~~~~~~~~~~~~~~lk~~~-~~~gl~~~~~~~h~~~~~nl~~~d~~~r~~s~~~~~~~i 95 (281)
T PRK01060 18 VAEAAEIGANAF-MIFTGNPQQWKRKPLEELNIEAFKAAC-EKYGISPEDILVHAPYLINLGNPNKEILEKSRDFLIQEI 95 (281)
T ss_pred HHHHHHcCCCEE-EEECCCCCCCcCCCCCHHHHHHHHHHH-HHcCCCCCceEEecceEecCCCCCHHHHHHHHHHHHHHH
Confidence 477889999998 24322 1355677654 4555554433 3221111001112234467888888
Q ss_pred HHHHhcCCCEEEEeccc
Q 006395 307 IEQAEQGVDYFTIHAGV 323 (647)
Q Consensus 307 ~eQaeqGVDf~TIHaGv 323 (647)
+--.+-|+.++++|.|-
T Consensus 96 ~~A~~lga~~vv~h~G~ 112 (281)
T PRK01060 96 ERCAALGAKLLVFHPGS 112 (281)
T ss_pred HHHHHcCCCEEEEcCCc
Confidence 88889999999999984
No 108
>PRK15446 phosphonate metabolism protein PhnM; Provisional
Probab=56.79 E-value=66 Score=34.63 Aligned_cols=56 Identities=18% Similarity=0.176 Sum_probs=37.4
Q ss_pred CcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHH----------HHHHHHHHhcCCeEEe
Q 006395 355 KENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQ----------GELTRRAWDKDVQVMN 419 (647)
Q Consensus 355 ~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~L----------GEL~krA~e~gVQVMI 419 (647)
+..+-++....+++++++|++.+ ..++......+.+...+ .|.++.+.+.|+.++.
T Consensus 208 ~~~~~~e~i~~~v~~A~~~g~~v---------~sH~~~~~~~i~~a~~~Gv~~~e~~~~~e~~~~~~~~g~~v~~ 273 (383)
T PRK15446 208 SARYAPPNRRAIAALARARGIPL---------ASHDDDTPEHVAEAHALGVAIAEFPTTLEAARAARALGMSVLM 273 (383)
T ss_pred HhhcCHHHHHHHHHHHHHCCCce---------eecCCCCHHHHHHHHHcCCceeeCCCcHHHHHHHHHCCCEEEe
Confidence 45566889999999999999776 34442223355555544 4566677777887764
No 109
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=55.98 E-value=30 Score=37.41 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=27.1
Q ss_pred CcccCccccccHHHHHHHHHcCCcCchhhhHHHHHH
Q 006395 333 KRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILD 368 (647)
Q Consensus 333 ~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ile 368 (647)
-++.||+||+-.=..++-..++- |.|+.||++++
T Consensus 28 ~eLvaV~d~~~erA~~~A~~~gi--~~y~~~eell~ 61 (343)
T TIGR01761 28 FELAGILAQGSERSRALAHRLGV--PLYCEVEELPD 61 (343)
T ss_pred cEEEEEEcCCHHHHHHHHHHhCC--CccCCHHHHhc
Confidence 47999999998776667666654 59999999983
No 110
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=55.83 E-value=1.4e+02 Score=32.74 Aligned_cols=158 Identities=15% Similarity=0.134 Sum_probs=86.7
Q ss_pred HHHHHHHHHhCCCEeeecC------CCCC-------hHHHHHHHHhcCCCccccchh--hh--HHHHhcCccCCCCH---
Q 006395 240 VYKVQWATMWGADTVMDLS------TGRH-------IHETREWILRNSAVPVGTVPI--YQ--ALEKVDGIAENLSW--- 299 (647)
Q Consensus 240 veKl~~A~~~GADtvMDLS------TGgd-------i~~~R~~Il~~spvPvGTVPI--Yq--A~~k~~g~~~dlt~--- 299 (647)
++.++.+-++|.|.|. +. -+.+ +.++|+. |+...+.|-.|-+ |. .+ + .|.+..-+.
T Consensus 35 ~e~i~~la~~GfdgVE-~~~~dl~P~~~~~~e~~~~~~~lk~~-L~~~GL~v~~v~~nl~~~~~~-~-~g~las~d~~vR 110 (382)
T TIGR02631 35 VEAVHKLAELGAYGVT-FHDDDLIPFGAPPQERDQIVRRFKKA-LDETGLKVPMVTTNLFSHPVF-K-DGGFTSNDRSVR 110 (382)
T ss_pred HHHHHHHHHhCCCEEE-ecccccCCCCCChhHHHHHHHHHHHH-HHHhCCeEEEeeccccCCccc-c-CCCCCCCCHHHH
Confidence 3566678899999995 43 2222 2355554 5666666443222 11 11 1 233444444
Q ss_pred ----HHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhH--h
Q 006395 300 ----EVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQ--Y 373 (647)
Q Consensus 300 ----e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~--Y 373 (647)
+.+.+.|+--++-|...|++|.|......+....+ .-.-+|+ -+.+.+|++.+++ |
T Consensus 111 ~~ai~~~kraId~A~eLGa~~v~v~~G~~g~~~~~~~d~---------~~a~~~~---------~e~L~~lae~A~~~G~ 172 (382)
T TIGR02631 111 RYALRKVLRNMDLGAELGAETYVVWGGREGAEYDGAKDV---------RAALDRM---------REALNLLAAYAEDQGY 172 (382)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEccCCCCCcCccccCH---------HHHHHHH---------HHHHHHHHHHHHhhCC
Confidence 45667777788899999999999543322211110 0012223 3788999999998 4
Q ss_pred ceeEeccC---CCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCC
Q 006395 374 DVALSIGD---GLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPM 427 (647)
Q Consensus 374 DVtlSLGD---GLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl 427 (647)
+|+|.|=- --|++.+ -++.+|..+++. .+.. ..-|.++++ .||+=|
T Consensus 173 GV~laLEp~p~~~~~~~l--l~T~~~al~li~---~v~~--pn~vgl~lD-vgH~~~ 221 (382)
T TIGR02631 173 GLRFALEPKPNEPRGDIL--LPTVGHALAFIE---TLER--PELFGLNPE-TGHEQM 221 (382)
T ss_pred CcEEEEccCCCCCCccee--cCCHHHHHHHHH---HcCC--ccceeEEEe-chhHhh
Confidence 89999943 3344444 344555555442 1110 111455554 488844
No 111
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=55.75 E-value=12 Score=36.00 Aligned_cols=16 Identities=31% Similarity=0.509 Sum_probs=14.2
Q ss_pred HHHHHHHhcCCeEEee
Q 006395 405 ELTRRAWDKDVQVMNE 420 (647)
Q Consensus 405 EL~krA~e~gVQVMIE 420 (647)
||.+|+|+.||+||-=
T Consensus 108 eLk~rlr~~GIPvi~l 123 (136)
T COG1412 108 ELKRRLRENGIPVITL 123 (136)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 8999999999999853
No 112
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=55.10 E-value=1.2e+02 Score=34.71 Aligned_cols=127 Identities=13% Similarity=0.062 Sum_probs=78.6
Q ss_pred HHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEEecc
Q 006395 243 VQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAG 322 (647)
Q Consensus 243 l~~A~~~GADtvMDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGVDf~TIHaG 322 (647)
++.|+++|||-|.|+|-+ +++++-+ ++..+.+|+=-+|.. . +-..+.|.+.++.-.+.||+=+-+=.|
T Consensus 221 ~eaAL~aGAdiINsVs~~-~~d~~~~-l~a~~g~~vVlm~~~-~---------~~~~~~l~~~ie~a~~~Gi~~IIlDPg 288 (499)
T TIGR00284 221 LYEALKAGASGVIMPDVE-NAVELAS-EKKLPEDAFVVVPGN-Q---------PTNYEELAKAVKKLRTSGYSKVAADPS 288 (499)
T ss_pred HHHHHHcCCCEEEECCcc-chhHHHH-HHHHcCCeEEEEcCC-C---------CchHHHHHHHHHHHHHCCCCcEEEeCC
Confidence 567888899999999765 6776643 566666777666641 1 111255556666656669964445555
Q ss_pred ccccccccccCcccCccccccHHHHHHHHHcCCcCc-hhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHH
Q 006395 323 VLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENF-AYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELL 401 (647)
Q Consensus 323 v~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENp-lY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~ 401 (647)
+-. .|. +.+..+++-++-+++++-+-+|= |.+..-.|+ .-+-
T Consensus 289 lg~------------------------------~~~~l~~sL~~l~~~r~~~~~Pil~Gv----SNvtel~da---Ds~g 331 (499)
T TIGR00284 289 LSP------------------------------PLLGLLESIIRFRRASRLLNVPLVFGA----ANVTELVDA---DSHG 331 (499)
T ss_pred CCc------------------------------chHHHHHHHHHHHHHHHhcCCcEEEee----ccccCCCcc---chhH
Confidence 420 122 67778888777667777666662 344333332 1223
Q ss_pred HHHHHHHHHHhcCCeEE
Q 006395 402 TQGELTRRAWDKDVQVM 418 (647)
Q Consensus 402 ~LGEL~krA~e~gVQVM 418 (647)
...-|+-.|-+.|+++.
T Consensus 332 ~naal~~~a~e~Ga~il 348 (499)
T TIGR00284 332 VNALLAAIALEAGASIL 348 (499)
T ss_pred HHHHHHHHHHHcCCCEE
Confidence 55667788999999854
No 113
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=54.68 E-value=2.8e+02 Score=29.20 Aligned_cols=139 Identities=9% Similarity=0.049 Sum_probs=80.2
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeccccc--cccccccCcc-------cC--ccccccHHHHHHHHHcCC---cCch-hhh
Q 006395 298 SWEVFRDTLIEQAEQGVDYFTIHAGVLL--RYIPLTAKRM-------TG--IVSRGGSIHAKWCLAYHK---ENFA-YEH 362 (647)
Q Consensus 298 t~e~~~d~i~eQaeqGVDf~TIHaGv~~--~~~~~~~~R~-------tg--IVSRGGSi~a~Wml~~~~---ENpl-Y~~ 362 (647)
+.+++.+.+++..++|...|-|+.|... +.+......+ -. ==|.--...++++...+- |=|+ ...
T Consensus 132 ~~~~~~~~a~~~~~~Gf~~~KiKv~~~~d~~~v~~vr~~~~~~~l~vDaN~~~~~~~a~~~~~l~~~~~~~iEeP~~~~~ 211 (324)
T TIGR01928 132 NDEQMLKQIESLKATGYKRIKLKITPQIMHQLVKLRRLRFPQIPLVIDANESYDLQDFPRLKELDRYQLLYIEEPFKIDD 211 (324)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEeCCchhHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhCCCcEEECCCChhH
Confidence 5688899999999999999999876321 1111000000 00 011212334556655443 4555 357
Q ss_pred HHHHHHHHhHhceeEeccCCCC------CCCccCCCcH-----HHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchH
Q 006395 363 WDEILDICNQYDVALSIGDGLR------PGSIYDANDT-----AQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIP 431 (647)
Q Consensus 363 FD~ileI~k~YDVtlSLGDGLR------PG~i~DA~D~-----AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~ 431 (647)
++.+-++.+..++-+.+|..+. .---..+.|- ..+.-+...-+++..|.++|++||+- +|+ -.-|.
T Consensus 212 ~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~--~~~-es~i~ 288 (324)
T TIGR01928 212 LSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAIETCREHGAKVWIG--GML-ETGIS 288 (324)
T ss_pred HHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHHHHHHHHcCCeEEEc--ceE-cccHH
Confidence 8889999999999999998652 1101112222 22233444447888899999999975 333 33444
Q ss_pred HHHHHHHH
Q 006395 432 ENMQKQLE 439 (647)
Q Consensus 432 ~nv~lqk~ 439 (647)
...-++.-
T Consensus 289 ~aa~~hla 296 (324)
T TIGR01928 289 RAFNVALA 296 (324)
T ss_pred HHHHHHHH
Confidence 44444443
No 114
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=53.99 E-value=2.2e+02 Score=30.71 Aligned_cols=72 Identities=17% Similarity=0.089 Sum_probs=36.2
Q ss_pred HHHHHHhCCCEeeecCCCC----ChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhc--CCCE
Q 006395 243 VQWATMWGADTVMDLSTGR----HIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQ--GVDY 316 (647)
Q Consensus 243 l~~A~~~GADtvMDLSTGg----di~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeq--GVDf 316 (647)
.+.|+.-|.-||+|...|- +..+.+...+.+..- ++ + .......+|+.|-..+..-.+. +|||
T Consensus 72 ~~~a~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (415)
T cd01297 72 LRPSSRQGVTTVVLGNCGVSPAPANPDDLARLIMLMEG--LV-----A----LGEGLPWGWATFAEYLDALEARPPAVNV 140 (415)
T ss_pred hhhHHhCcEEEEEeccccCccCCCChhhhhhhhhhhhc--cc-----c----cccccCCCCCCHHHHHHHHHhcCCCcCe
Confidence 4567888999999865541 111111111111100 11 1 1223346777665555554344 5887
Q ss_pred EE--Eeccccc
Q 006395 317 FT--IHAGVLL 325 (647)
Q Consensus 317 ~T--IHaGv~~ 325 (647)
.. .|.+++.
T Consensus 141 ~~~~~h~~l~~ 151 (415)
T cd01297 141 AALVGHAALRR 151 (415)
T ss_pred eeccCcHHHHH
Confidence 64 7877654
No 115
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=53.42 E-value=17 Score=38.79 Aligned_cols=51 Identities=18% Similarity=0.235 Sum_probs=39.4
Q ss_pred hhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHH----------HHHHHHHhcCCeEEe
Q 006395 360 YEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQG----------ELTRRAWDKDVQVMN 419 (647)
Q Consensus 360 Y~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LG----------EL~krA~e~gVQVMI 419 (647)
.++...|++.++++++.+. +||......+.+...+| +.++.++++|+.|+.
T Consensus 162 ~~~~~~iv~~A~~~gl~va---------sH~d~~~~~v~~a~~~Gv~~~E~p~t~e~a~~a~~~G~~vv~ 222 (325)
T cd01306 162 PANRSELAALARARGIPLA---------SHDDDTPEHVAEAHELGVVISEFPTTLEAAKAARELGLQTLM 222 (325)
T ss_pred HHHHHHHHHHHHHCCCcEE---------EecCCChHHHHHHHHCCCeeccCCCCHHHHHHHHHCCCEEEe
Confidence 6899999999999988664 34444445666666654 788999999999993
No 116
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=52.37 E-value=1.2e+02 Score=30.86 Aligned_cols=164 Identities=14% Similarity=0.193 Sum_probs=85.7
Q ss_pred CCChHHHHHHHHHHHHhCCCEe-ee------cCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCcc-CCCCH-HHH-
Q 006395 233 ASSIEEEVYKVQWATMWGADTV-MD------LSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIA-ENLSW-EVF- 302 (647)
Q Consensus 233 ~~~ie~EveKl~~A~~~GADtv-MD------LSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~-~dlt~-e~~- 302 (647)
..+++.=.+-++...++|||.| +| +-.|.-|...=.+-|++-.-.--...+...+.+....+ .=|+- ..+
T Consensus 10 ~P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~ 89 (242)
T cd04724 10 DPDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPIL 89 (242)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHH
Confidence 3455544555777788899997 56 66676666554444444322222222333332211111 11111 221
Q ss_pred ----HHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEe
Q 006395 303 ----RDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALS 378 (647)
Q Consensus 303 ----~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlS 378 (647)
-+.+++-++.|+|.+++|- . | |++++++++.|++|++...
T Consensus 90 ~~G~~~fi~~~~~aG~~giiipD----------------------------------l-~-~ee~~~~~~~~~~~g~~~i 133 (242)
T cd04724 90 QYGLERFLRDAKEAGVDGLIIPD----------------------------------L-P-PEEAEEFREAAKEYGLDLI 133 (242)
T ss_pred HhCHHHHHHHHHHCCCcEEEECC----------------------------------C-C-HHHHHHHHHHHHHcCCcEE
Confidence 1235556778999999981 0 1 3688899999999876443
Q ss_pred ccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcC-CeEEeeCCCC---CC-CCchHHHHHHHHHhcCCCCccc
Q 006395 379 IGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKD-VQVMNEGPGH---IP-MHKIPENMQKQLEWCNEAPFYT 448 (647)
Q Consensus 379 LGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~g-VQVMIEGPGH---VP-l~~I~~nv~lqk~lc~~APfYv 448 (647)
+- +...+....+.++.. . ..| |-+|--.||. .+ ...+.+.++.-++++ +.|..+
T Consensus 134 ~~-------i~P~T~~~~i~~i~~------~--~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~-~~pI~v 192 (242)
T cd04724 134 FL-------VAPTTPDERIKKIAE------L--ASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYT-DLPIAV 192 (242)
T ss_pred EE-------eCCCCCHHHHHHHHh------h--CCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcC-CCcEEE
Confidence 31 556666555544432 1 122 4455434433 21 344556666666654 455554
No 117
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=52.36 E-value=1.4e+02 Score=30.61 Aligned_cols=141 Identities=13% Similarity=0.056 Sum_probs=84.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccc-----cccCcccCcccc--------------ccHHHHHHHHHcCC
Q 006395 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIP-----LTAKRMTGIVSR--------------GGSIHAKWCLAYHK 355 (647)
Q Consensus 295 ~dlt~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~-----~~~~R~tgIVSR--------------GGSi~a~Wml~~~~ 355 (647)
...+++...+..++|.++|.|++-|=++.++.... ....|+..+|.. ==. .++=++.+..
T Consensus 19 ~~~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~piSIDT~~~~-v~~aaL~~g~ 97 (258)
T cd00423 19 KFLSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVPISVDTFNAE-VAEAALKAGA 97 (258)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCcHH-HHHHHHHhCC
Confidence 45789999999999999999999999998853321 011233333321 111 1222333221
Q ss_pred c--Cch-hhhH-HHHHHHHhHhceeEec----cCCCCCCCccCCCcHHHHHH--HHHHHHHHHHHHhcCC---eEEeeCC
Q 006395 356 E--NFA-YEHW-DEILDICNQYDVALSI----GDGLRPGSIYDANDTAQFAE--LLTQGELTRRAWDKDV---QVMNEGP 422 (647)
Q Consensus 356 E--Npl-Y~~F-D~ileI~k~YDVtlSL----GDGLRPG~i~DA~D~AQ~~E--L~~LGEL~krA~e~gV---QVMIEGP 422 (647)
. |-. .+.+ +++++++++|++.+=+ |++.+..+..+-. ...| +..+-+++++|.++|| ++++ =|
T Consensus 98 ~iINdis~~~~~~~~~~l~~~~~~~vV~m~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~Gi~~~~Iil-DP 173 (258)
T cd00423 98 DIINDVSGGRGDPEMAPLAAEYGAPVVLMHMDGTPQTMQNNPYYA---DVVDEVVEFLEERVEAATEAGIPPEDIIL-DP 173 (258)
T ss_pred CEEEeCCCCCCChHHHHHHHHcCCCEEEECcCCCCcccccCCCcc---hHHHHHHHHHHHHHHHHHHcCCCHHHEEE-eC
Confidence 0 110 1122 8999999999875543 4455443332211 1222 4567788999999996 4454 48
Q ss_pred CCCCCCchHHHHHHHHHh
Q 006395 423 GHIPMHKIPENMQKQLEW 440 (647)
Q Consensus 423 GHVPl~~I~~nv~lqk~l 440 (647)
|.-|......|+.+-+.+
T Consensus 174 g~g~~k~~~~~~~~l~~i 191 (258)
T cd00423 174 GIGFGKTEEHNLELLRRL 191 (258)
T ss_pred CCCccCCHHHHHHHHHHH
Confidence 888887777776655544
No 118
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=51.32 E-value=39 Score=35.71 Aligned_cols=156 Identities=17% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHhCCCEeeec-------CCCCChHHHHHHHHhcC---CCccccchhhh---HHHHhcCccCC------------CC
Q 006395 244 QWATMWGADTVMDL-------STGRHIHETREWILRNS---AVPVGTVPIYQ---ALEKVDGIAEN------------LS 298 (647)
Q Consensus 244 ~~A~~~GADtvMDL-------STGgdi~~~R~~Il~~s---pvPvGTVPIYq---A~~k~~g~~~d------------lt 298 (647)
+.|..-|.-||+|. ++-..+.+.+++.-+++ -.+.|.+.... .++....-... ++
T Consensus 39 ~aA~~GGvTtii~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~G~~~~k~~~~~~~~ 118 (374)
T cd01317 39 KAAAAGGFTTVVCMPNTNPVIDNPAVVELLKNRAKDVGIVRVLPIGALTKGLKGEELTEIGELLEAGAVGFSDDGKPIQD 118 (374)
T ss_pred HHHHhCCCcEEEECCCCCCCCCCHHHHHHHHHHhccCCceeEEEEEEEeeCCCcccHHHHHHHHHCCcEEEEcCCcCCCC
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEe
Q 006395 299 WEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALS 378 (647)
Q Consensus 299 ~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlS 378 (647)
.+.+++.++.-++.|. .+.+|| -+.+.+. .-+-+.|.+-...-.+...+.--.....++++++++|++.+-
T Consensus 119 ~~~l~~~~~~~~~~g~-~v~~H~-E~~~~~~-------~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~~~~i~ 189 (374)
T cd01317 119 AELLRRALEYAAMLDL-PIIVHP-EDPSLAG-------GGVMNEGKVASRLGLPGIPPEAETIMVARDLELAEATGARVH 189 (374)
T ss_pred HHHHHHHHHHHHhcCC-eEEEec-CChhhhh-------ccCccCChhhHHhCCCCCCHHHHHHHHHHHHHHHHHhCCcEE
Q ss_pred ccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCC
Q 006395 379 IGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGH 424 (647)
Q Consensus 379 LGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGH 424 (647)
+.=--=+.++ ++++.|++.|+++-.|=.-|
T Consensus 190 i~h~ss~~~l----------------~~i~~~~~~G~~~~~e~~~h 219 (374)
T cd01317 190 FQHLSTARSL----------------ELIRKAKAKGLPVTAEVTPH 219 (374)
T ss_pred EEeCCCHHHH----------------HHHHHHHHCCCCEEEEecHH
No 119
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=51.22 E-value=1e+02 Score=30.71 Aligned_cols=78 Identities=12% Similarity=0.119 Sum_probs=53.1
Q ss_pred hhhHHHHHHHHhHhcee---EeccCCCCCCCccCCCcHHHHHHH-HHHHHHHHHHHhcCCeEEeeC--CC-CCCCCchHH
Q 006395 360 YEHWDEILDICNQYDVA---LSIGDGLRPGSIYDANDTAQFAEL-LTQGELTRRAWDKDVQVMNEG--PG-HIPMHKIPE 432 (647)
Q Consensus 360 Y~~FD~ileI~k~YDVt---lSLGDGLRPG~i~DA~D~AQ~~EL-~~LGEL~krA~e~gVQVMIEG--PG-HVPl~~I~~ 432 (647)
.++|++.+++|++..+. +..| .+|...+ +..+++.+ ..|-+|++.|.++||++-+|- |. ...++-..+
T Consensus 89 ~~~~~~~i~~a~~lGa~~i~~~~~---~~~~~~~--~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~~~~~~~~~~t~~~ 163 (275)
T PRK09856 89 LDMIKLAMDMAKEMNAGYTLISAA---HAGYLTP--PNVIWGRLAENLSELCEYAENIGMDLILEPLTPYESNVVCNAND 163 (275)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCC---CCCCCCC--HHHHHHHHHHHHHHHHHHHHHcCCEEEEecCCCCcccccCCHHH
Confidence 68899999999998754 3333 3343332 23333333 367899999999999999994 21 234667788
Q ss_pred HHHHHHHhcC
Q 006395 433 NMQKQLEWCN 442 (647)
Q Consensus 433 nv~lqk~lc~ 442 (647)
-+++-+.+.+
T Consensus 164 ~~~l~~~~~~ 173 (275)
T PRK09856 164 VLHALALVPS 173 (275)
T ss_pred HHHHHHHcCC
Confidence 8888777654
No 120
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=50.91 E-value=2.6e+02 Score=27.59 Aligned_cols=167 Identities=20% Similarity=0.159 Sum_probs=109.7
Q ss_pred hHHHHHH-HHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCC
Q 006395 236 IEEEVYK-VQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGV 314 (647)
Q Consensus 236 ie~EveK-l~~A~~~GADtvMDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGV 314 (647)
=.+++++ ++.|.++|.|+|+-- -+-+...|+. +.++++-+.+|- +-..-..+.+.....+++-.++|+
T Consensus 15 t~~~i~~~~~~a~~~~~~av~v~--p~~v~~~~~~-l~~~~~~v~~~~--------~fp~g~~~~~~k~~eve~A~~~GA 83 (203)
T cd00959 15 TEEDIRKLCDEAKEYGFAAVCVN--PCFVPLAREA-LKGSGVKVCTVI--------GFPLGATTTEVKVAEAREAIADGA 83 (203)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEc--HHHHHHHHHH-cCCCCcEEEEEE--------ecCCCCCcHHHHHHHHHHHHHcCC
Confidence 4566666 567788999999933 2344445554 455667776661 112223566777788999999999
Q ss_pred CEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeE--eccCCCCCCCccCCC
Q 006395 315 DYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVAL--SIGDGLRPGSIYDAN 392 (647)
Q Consensus 315 Df~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtl--SLGDGLRPG~i~DA~ 392 (647)
|-+-++.-+. + +..+.++-.++..-++.+.|. ++.| .+..+.- +
T Consensus 84 devdvv~~~g------------------------~-~~~~~~~~~~~ei~~v~~~~~--g~~lkvI~e~~~l-------~ 129 (203)
T cd00959 84 DEIDMVINIG------------------------A-LKSGDYEAVYEEIAAVVEACG--GAPLKVILETGLL-------T 129 (203)
T ss_pred CEEEEeecHH------------------------H-HhCCCHHHHHHHHHHHHHhcC--CCeEEEEEecCCC-------C
Confidence 9998887541 1 222344556667777777775 5443 5555543 1
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcC-CCCccccCcccc
Q 006395 393 DTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCN-EAPFYTLGPLTT 454 (647)
Q Consensus 393 D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~nv~lqk~lc~-~APfYvLGPLvT 454 (647)
| ..+...++.|-+.|.-.+==+.|=.|-.-=.+++++.++.+. ..|+.+-|-.-|
T Consensus 130 ~-------~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~~~v~ik~aGGikt 185 (203)
T cd00959 130 D-------EEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVGGRVGVKAAGGIRT 185 (203)
T ss_pred H-------HHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhCCCceEEEeCCCCC
Confidence 1 246667888999999988777777666655677788878775 567888876553
No 121
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=50.90 E-value=81 Score=35.84 Aligned_cols=92 Identities=21% Similarity=0.224 Sum_probs=60.9
Q ss_pred ceeEeeccccCCCCCChHHHHHHHHHHHHhCCCEe---eecCCCCChHHHHHHHHhcCCCccccchhhhHHHH-h-cCcc
Q 006395 220 LVKVNANIGNSAVASSIEEEVYKVQWATMWGADTV---MDLSTGRHIHETREWILRNSAVPVGTVPIYQALEK-V-DGIA 294 (647)
Q Consensus 220 ~tKVNANIGtS~~~~~ie~EveKl~~A~~~GADtv---MDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k-~-~g~~ 294 (647)
..||.+.|- ..+.++-+.+++.+...|+|-| +|+....+..+.-..+++..++ |+-=.+.. . ||.
T Consensus 22 ~~~icv~i~----~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~~~~~~~~-----plI~T~R~~~eGG~- 91 (529)
T PLN02520 22 PTLICVPIM----ADSVDKMLIEMAKAKELGADLVEIRLDFLKNFNPREDLKTLIKQSPL-----PTLVTYRPKWEGGQ- 91 (529)
T ss_pred CCEEEEEeC----CCCHHHHHHHHHHhhhcCCCEEEEEeccccccCCHHHHHHHHhcCCC-----cEEEEeccHHHCCC-
Confidence 346666552 2235666677878888899999 9988764333333455654444 44333332 1 444
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEec
Q 006395 295 ENLSWEVFRDTLIEQAEQGVDYFTIHA 321 (647)
Q Consensus 295 ~dlt~e~~~d~i~eQaeqGVDf~TIHa 321 (647)
-..++++.++.++.-++.|+||+-|=-
T Consensus 92 ~~~~~~~~~~ll~~~~~~~~d~iDiEl 118 (529)
T PLN02520 92 YEGDENKRQDALRLAMELGADYVDVEL 118 (529)
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEEEEc
Confidence 578999999999998999999998853
No 122
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=50.89 E-value=1.2e+02 Score=31.48 Aligned_cols=123 Identities=10% Similarity=0.078 Sum_probs=71.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccc-----------cHHHHHHHHHc--C-----Cc
Q 006395 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRG-----------GSIHAKWCLAY--H-----KE 356 (647)
Q Consensus 295 ~dlt~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRG-----------GSi~a~Wml~~--~-----~E 356 (647)
.+-+.+...+..++|.++|.|++.|=++.....-+..-.|+...|..- -.. +.=.+.+ + -=
T Consensus 21 ~~~~~d~~~~~A~~~~~~GAdiIDIG~~~~~~~~~ee~~r~v~~i~~~~~~piSIDT~~~~v-~e~aL~~~~G~~iINsI 99 (252)
T cd00740 21 KAEDYDEALDVARQQVEGGAQILDLNVDYGGLDGVSAMKWLLNLLATEPTVPLMLDSTNWEV-IEAGLKCCQGKCVVNSI 99 (252)
T ss_pred HcCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCcEEeeCCcHHH-HHHHHhhCCCCcEEEeC
Confidence 446779999999999999999999988754111111224554444311 111 2223332 1 11
Q ss_pred Cchh--hhHHHHHHHHhHhceeEecc----CCCCCCCccCCCcHHHHHHHHHHHHHHHHHH-hcCC---eEEeeCCCCCC
Q 006395 357 NFAY--EHWDEILDICNQYDVALSIG----DGLRPGSIYDANDTAQFAELLTQGELTRRAW-DKDV---QVMNEGPGHIP 426 (647)
Q Consensus 357 NplY--~~FD~ileI~k~YDVtlSLG----DGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~-e~gV---QVMIEGPGHVP 426 (647)
|-+. +.++.+++++++|++.+=+= .| .|- +..+ -+..+-++.+++. +.|| ++++- ||.-|
T Consensus 100 s~~~~~e~~~~~~~~~~~~~~~vV~m~~~~~g-~p~---t~~~-----~~~~~~~~~~~~~~~~gi~~~~IiiD-Pgig~ 169 (252)
T cd00740 100 NLEDGEERFLKVARLAKEHGAAVVVLAFDEQG-QAK---TRDK-----KVEIAERAYEALTEFVGFPPEDIIFD-PLILP 169 (252)
T ss_pred CCCCCccccHHHHHHHHHhCCCEEEeccCCCC-CCC---CHHH-----HHHHHHHHHHHHHHHcCCCHHHEEEe-CCccc
Confidence 2222 56899999999997655441 22 132 2211 2456667777776 4577 77774 66666
Q ss_pred CC
Q 006395 427 MH 428 (647)
Q Consensus 427 l~ 428 (647)
..
T Consensus 170 ~~ 171 (252)
T cd00740 170 IA 171 (252)
T ss_pred cc
Confidence 55
No 123
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=50.77 E-value=86 Score=32.94 Aligned_cols=148 Identities=16% Similarity=0.140 Sum_probs=79.8
Q ss_pred HHHHHHhCCCEeeecCCC----CChHHHHHHH---HhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCC
Q 006395 243 VQWATMWGADTVMDLSTG----RHIHETREWI---LRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVD 315 (647)
Q Consensus 243 l~~A~~~GADtvMDLSTG----gdi~~~R~~I---l~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGVD 315 (647)
.+.|..-|--||+|.-.. .+...++.++ -+++-+.+| +| +. ++.+.-++.|.+..+.||.
T Consensus 30 t~aA~~GG~Ttv~~mpn~~p~~~~~~~~~~~~~~a~~~~~~d~~---~~-------~~---~~~~~~~~el~~l~~~Gv~ 96 (337)
T cd01302 30 SRAAAAGGVTTVIDMPNTGPPPIDLPAIELKIKLAEESSYVDFS---FH-------AG---IGPGDVTDELKKLFDAGIN 96 (337)
T ss_pred HHHHHhCCCcEEEECCCCCCCCCcHHHHHHHHHHhCcCcEeeEE---EE-------Ee---ccCccCHHHHHHHHHcCCc
Confidence 467888899999997422 1223332222 222323333 11 01 1211123445555678988
Q ss_pred EEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHH
Q 006395 316 YFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTA 395 (647)
Q Consensus 316 f~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~A 395 (647)
-|-+|..... +. .+.+ .-..++......+...-|+.-|=.+++++++++++.+-+-=- +.+
T Consensus 97 g~K~f~~~~~-------~~-~~~~-~~~~l~~~~~~~~~~g~~v~~H~Er~~~la~~~g~~l~i~Hi---------ss~- 157 (337)
T cd01302 97 SLKVFMNYYF-------GE-LFDV-DDGTLMRTFLEIASRGGPVMVHAERAAQLAEEAGANVHIAHV---------SSG- 157 (337)
T ss_pred EEEEEEeccC-------CC-cccc-CHHHHHHHHHHHHhcCCeEEEeHHHHHHHHHHhCCcEEEEeC---------CCH-
Confidence 8888753210 00 0112 223444445444444556666666999999999987533111 011
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEee-CCCCCCCC
Q 006395 396 QFAELLTQGELTRRAWDKDVQVMNE-GPGHIPMH 428 (647)
Q Consensus 396 Q~~EL~~LGEL~krA~e~gVQVMIE-GPGHVPl~ 428 (647)
.--++++.|++.|++|-.| -|-|.=++
T Consensus 158 ------~~le~i~~ak~~g~~vt~ev~ph~L~l~ 185 (337)
T cd01302 158 ------EALELIKFAKNKGVKVTCEVCPHHLFLD 185 (337)
T ss_pred ------HHHHHHHHHHHCCCcEEEEcChhhheeC
Confidence 1126677889999999999 56665554
No 124
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=50.63 E-value=28 Score=37.99 Aligned_cols=142 Identities=15% Similarity=0.116 Sum_probs=79.3
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEecc------cccc-------cccc-cc---CcccCcccc--ccH-HHHHHHHHcCCc-
Q 006395 298 SWEVFRDTLIEQAEQGVDYFTIHAG------VLLR-------YIPL-TA---KRMTGIVSR--GGS-IHAKWCLAYHKE- 356 (647)
Q Consensus 298 t~e~~~d~i~eQaeqGVDf~TIHaG------v~~~-------~~~~-~~---~R~tgIVSR--GGS-i~a~Wml~~~~E- 356 (647)
++.++.+.|.+-++.|.|.+++|.. .... .+.. .. =++..+... .+. +...-+...+++
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g~las~d~~v 109 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETGLKVPMVTTNLFSHPVFKDGGFTSNDRSV 109 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHHhCCeEEEeeccccCCccccCCCCCCCCHHH
Confidence 5668889999999999999999943 2210 1110 00 111111110 000 000001111111
Q ss_pred -CchhhhHHHHHHHHhHhce-eEeccCCCCCCCccC-CCc-HHHHH-HHHHHHHHHHHHHhc--CCeEEeeC-CC----C
Q 006395 357 -NFAYEHWDEILDICNQYDV-ALSIGDGLRPGSIYD-AND-TAQFA-ELLTQGELTRRAWDK--DVQVMNEG-PG----H 424 (647)
Q Consensus 357 -NplY~~FD~ileI~k~YDV-tlSLGDGLRPG~i~D-A~D-~AQ~~-EL~~LGEL~krA~e~--gVQVMIEG-PG----H 424 (647)
---.+++.+-+++|++.+. ++++==| |.|.-.| ..| +.++. -...|.+|++.|.++ ||++.||= |. +
T Consensus 110 R~~ai~~~kraId~A~eLGa~~v~v~~G-~~g~~~~~~~d~~~a~~~~~e~L~~lae~A~~~G~GV~laLEp~p~~~~~~ 188 (382)
T TIGR02631 110 RRYALRKVLRNMDLGAELGAETYVVWGG-REGAEYDGAKDVRAALDRMREALNLLAAYAEDQGYGLRFALEPKPNEPRGD 188 (382)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEccC-CCCCcCccccCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEccCCCCCCcc
Confidence 1225677889999999988 3555444 3343333 233 22333 345679999999997 69999996 33 3
Q ss_pred CCCCchHHHHHHHHHh
Q 006395 425 IPMHKIPENMQKQLEW 440 (647)
Q Consensus 425 VPl~~I~~nv~lqk~l 440 (647)
.-++.+..-+.+.+++
T Consensus 189 ~ll~T~~~al~li~~v 204 (382)
T TIGR02631 189 ILLPTVGHALAFIETL 204 (382)
T ss_pred eecCCHHHHHHHHHHc
Confidence 4577777666666665
No 125
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=50.44 E-value=1.4e+02 Score=31.35 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeccc
Q 006395 298 SWEVFRDTLIEQAEQGVDYFTIHAGV 323 (647)
Q Consensus 298 t~e~~~d~i~eQaeqGVDf~TIHaGv 323 (647)
+.+.+.+.+.+..++|.+.|-||+|-
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~ 164 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGG 164 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 78999999999999999999999984
No 126
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=49.85 E-value=2.9e+02 Score=27.88 Aligned_cols=78 Identities=21% Similarity=0.220 Sum_probs=48.5
Q ss_pred CChHHHHHHHHHHHHhCCCEeeecCCC---CChHHHHHHHHhcCCC----ccccchhhhHHHHhcCccCCCCHHHHHHHH
Q 006395 234 SSIEEEVYKVQWATMWGADTVMDLSTG---RHIHETREWILRNSAV----PVGTVPIYQALEKVDGIAENLSWEVFRDTL 306 (647)
Q Consensus 234 ~~ie~EveKl~~A~~~GADtvMDLSTG---gdi~~~R~~Il~~spv----PvGTVPIYqA~~k~~g~~~dlt~e~~~d~i 306 (647)
.+++.=++.+..+.+.|..|+.|.++. .+....++-. +.+++ .+|--|.+..- ......+.+.+.+.+
T Consensus 29 ~~~~~~~~~~~~~~~~Gvttiv~~~~~~~~~~~~~~~~~~-~~~g~~v~~~~G~hp~~~~~----~~~~~~~~~~l~~~~ 103 (293)
T cd00530 29 ADVEAAKEELKRFRAHGGRTIVDATPPGIGRDVEKLAEVA-RATGVNIVAATGFYKDAFYP----EWVRLRSVEELTDML 103 (293)
T ss_pred hhHHHHHHHHHHHHHcCCCeEEEcCCcccCcCHHHHHHHH-HHhCCcEEEecccCCCccCh----HHHhhCCHHHHHHHH
Confidence 356666677788999999999999973 4666665544 44443 34544432100 001234556777777
Q ss_pred HHHHhcCCCE
Q 006395 307 IEQAEQGVDY 316 (647)
Q Consensus 307 ~eQaeqGVDf 316 (647)
++...+|++-
T Consensus 104 ~~~l~~~~~~ 113 (293)
T cd00530 104 IREIEEGIEG 113 (293)
T ss_pred HHHHHhcccc
Confidence 7777777763
No 127
>PRK08005 epimerase; Validated
Probab=49.62 E-value=32 Score=34.95 Aligned_cols=122 Identities=16% Similarity=0.004 Sum_probs=65.8
Q ss_pred eEeeccccCCCCCChHHHHHHHHHHHHhCCCE----eeecCCCCChH---HHHHHHHhcCCCccccchhhhHHHHhcCcc
Q 006395 222 KVNANIGNSAVASSIEEEVYKVQWATMWGADT----VMDLSTGRHIH---ETREWILRNSAVPVGTVPIYQALEKVDGIA 294 (647)
Q Consensus 222 KVNANIGtS~~~~~ie~EveKl~~A~~~GADt----vMDLSTGgdi~---~~R~~Il~~spvPvGTVPIYqA~~k~~g~~ 294 (647)
+|..+| -|++...+++|++++. ++|+|. |||=.--.||. .+=++|-+.+++|+ ++ +=-+
T Consensus 2 ~i~pSi-l~ad~~~l~~el~~l~---~~g~d~lHiDvMDG~FVPN~tfG~~~i~~l~~~t~~~~------Dv----HLMv 67 (210)
T PRK08005 2 ILHPSL-ASADPLRYAEALTALH---DAPLGSLHLDIEDTSFINNITFGMKTIQAVAQQTRHPL------SF----HLMV 67 (210)
T ss_pred EEEeeh-hhCCHHHHHHHHHHHH---HCCCCEEEEeccCCCcCCccccCHHHHHHHHhcCCCCe------EE----Eecc
Confidence 344555 4566677888887775 569997 67743333321 13333333333331 10 0000
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCc-----CchhhhHHHHHHH
Q 006395 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKE-----NFAYEHWDEILDI 369 (647)
Q Consensus 295 ~dlt~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~E-----NplY~~FD~ileI 369 (647)
. +++. .|++-++.|+|++|||.--+.. +.. +.+++..++.. ||- |-.+.|..+
T Consensus 68 ~--~P~~---~i~~~~~~gad~It~H~Ea~~~-~~~---------------~l~~Ik~~G~k~GlAlnP~-Tp~~~i~~~ 125 (210)
T PRK08005 68 S--SPQR---WLPWLAAIRPGWIFIHAESVQN-PSE---------------ILADIRAIGAKAGLALNPA-TPLLPYRYL 125 (210)
T ss_pred C--CHHH---HHHHHHHhCCCEEEEcccCccC-HHH---------------HHHHHHHcCCcEEEEECCC-CCHHHHHHH
Confidence 1 2343 5566678899999999974321 110 22333333332 553 677777777
Q ss_pred HhHhceeEec
Q 006395 370 CNQYDVALSI 379 (647)
Q Consensus 370 ~k~YDVtlSL 379 (647)
+..-|..|=+
T Consensus 126 l~~vD~VlvM 135 (210)
T PRK08005 126 ALQLDALMIM 135 (210)
T ss_pred HHhcCEEEEE
Confidence 7777765544
No 128
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=49.31 E-value=1.2e+02 Score=31.66 Aligned_cols=158 Identities=13% Similarity=0.022 Sum_probs=95.8
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeE
Q 006395 298 SWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVAL 377 (647)
Q Consensus 298 t~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtl 377 (647)
+.+.++++-++-.+.|+.|+ +.++.+ +|-..- | -.-|--+.+..|-++|+++++.+
T Consensus 37 ~~~~~~~~A~~lk~~~~k~~-------r~~~~K--pRtsp~-s--------------~~g~g~~gl~~l~~~~~~~Gl~~ 92 (260)
T TIGR01361 37 SEEQIMETARFVKEAGAKIL-------RGGAFK--PRTSPY-S--------------FQGLGEEGLKLLRRAADEHGLPV 92 (260)
T ss_pred CHHHHHHHHHHHHHHHHHhc-------cCceec--CCCCCc-c--------------ccccHHHHHHHHHHHHHHhCCCE
Confidence 46777777777777776633 233332 343320 1 12233677888999999999876
Q ss_pred eccCCCCCCCccCCCcHHHHHHHH-------------HHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHH------
Q 006395 378 SIGDGLRPGSIYDANDTAQFAELL-------------TQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQL------ 438 (647)
Q Consensus 378 SLGDGLRPG~i~DA~D~AQ~~EL~-------------~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~nv~lqk------ 438 (647)
.- +..|..|+.+|. +.=.|.+.+-+.|..|++.=+=+.-+.+|..-++.-+
T Consensus 93 ~t----------~~~d~~~~~~l~~~~d~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~ 162 (260)
T TIGR01361 93 VT----------EVMDPRDVEIVAEYADILQIGARNMQNFELLKEVGKQGKPVLLKRGMGNTIEEWLYAAEYILSSGNGN 162 (260)
T ss_pred EE----------eeCChhhHHHHHhhCCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCc
Confidence 43 566666666663 3347888999999999999887777888877776654
Q ss_pred -HhcC-CCCcc-ccCcccc------------ccCCCc--hhHHH-----hHHHHHhhhcccc---eeeecCchhhc
Q 006395 439 -EWCN-EAPFY-TLGPLTT------------DIAPGY--DHITS-----AIGAANIGALGTA---LLCYVTPKEHL 489 (647)
Q Consensus 439 -~lc~-~APfY-vLGPLvT------------DIApGY--DHIts-----AIGaA~aa~~Gad---~LCYVTPaEHL 489 (647)
-+|+ +..-| --.++.- +.--|| ||..+ ..=+-.|.++||+ +=.-.||...+
T Consensus 163 i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~t~d~a~ 238 (260)
T TIGR01361 163 VILCERGIRTFEKATRNTLDLSAVPVLKKETHLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHPDPEKAL 238 (260)
T ss_pred EEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCCCccccC
Confidence 3566 45444 3333332 334466 67544 1112234567888 33445665554
No 129
>PRK12361 hypothetical protein; Provisional
Probab=49.16 E-value=57 Score=36.68 Aligned_cols=122 Identities=14% Similarity=0.187 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEE
Q 006395 239 EVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFT 318 (647)
Q Consensus 239 EveKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGVDf~T 318 (647)
++++++ ++|-.+|.||..--+. . ++-.....+-.=.+|+.+-. ....-..+...+.|+++.++|=. +=
T Consensus 112 d~~~L~---~~gI~~Vldlt~E~~~--~-~~~~~~~~i~yl~iPi~D~~-----~p~~~~l~~a~~~i~~~~~~~~~-Vl 179 (547)
T PRK12361 112 DLEKLK---SNKITAILDVTAEFDG--L-DWSLTEEDIDYLNIPILDHS-----VPTLAQLNQAINWIHRQVRANKS-VV 179 (547)
T ss_pred cHHHHH---HcCCCEEEEccccccc--c-cccccccCceEEEeecCCCC-----CCcHHHHHHHHHHHHHHHHCCCe-EE
Confidence 445553 6999999999743221 0 00000111222233443310 00001134556777788877755 55
Q ss_pred EeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHH
Q 006395 319 IHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFA 398 (647)
Q Consensus 319 IHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~ 398 (647)
|||- .+ +||.++++++|+++.++.- .+++-++..|+ .||...--. +|..
T Consensus 180 VHC~---------~G-----~sRSa~vv~ayLm~~~~~~----~~~eA~~~vr~----------~Rp~v~~n~---~q~~ 228 (547)
T PRK12361 180 VHCA---------LG-----RGRSVLVLAAYLLCKDPDL----TVEEVLQQIKQ----------IRKTARLNK---RQLR 228 (547)
T ss_pred EECC---------CC-----CCcHHHHHHHHHHHhccCC----CHHHHHHHHHH----------HCCCCCCCH---HHHH
Confidence 9993 33 5999999999999775432 23666666655 366655432 4555
Q ss_pred HHHHH
Q 006395 399 ELLTQ 403 (647)
Q Consensus 399 EL~~L 403 (647)
.|..+
T Consensus 229 ~l~~~ 233 (547)
T PRK12361 229 ALEKM 233 (547)
T ss_pred HHHHH
Confidence 55443
No 130
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=48.33 E-value=44 Score=33.49 Aligned_cols=169 Identities=23% Similarity=0.194 Sum_probs=87.1
Q ss_pred eEeeccccCCCCCChHHHHHHHHHHHHhCCCE----eeecCCCCCh---HHHHHHHHhcCCCccccchhhhHHHHhcCcc
Q 006395 222 KVNANIGNSAVASSIEEEVYKVQWATMWGADT----VMDLSTGRHI---HETREWILRNSAVPVGTVPIYQALEKVDGIA 294 (647)
Q Consensus 222 KVNANIGtS~~~~~ie~EveKl~~A~~~GADt----vMDLSTGgdi---~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~ 294 (647)
||.++|= +++...+++|++++ .++|+|. |||-.--.|+ ..+=++|-+.+.+|+-. +=-+
T Consensus 1 kI~pSil-~ad~~~l~~~i~~l---~~~g~d~lHiDiMDg~fvpn~~~g~~~i~~i~~~~~~~~Dv----------HLMv 66 (201)
T PF00834_consen 1 KISPSIL-SADFLNLEEEIKRL---EEAGADWLHIDIMDGHFVPNLTFGPDIIKAIRKITDLPLDV----------HLMV 66 (201)
T ss_dssp EEEEBGG-GS-GGGHHHHHHHH---HHTT-SEEEEEEEBSSSSSSB-B-HHHHHHHHTTSSSEEEE----------EEES
T ss_pred Ceehhhh-hCCHHHHHHHHHHH---HHcCCCEEEEeecccccCCcccCCHHHHHHHhhcCCCcEEE----------Eeee
Confidence 5666663 45567888888877 5778995 6884443332 23333333333333311 0000
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEecccccccccc-----ccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHH
Q 006395 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPL-----TAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDI 369 (647)
Q Consensus 295 ~dlt~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~-----~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI 369 (647)
-+++. .|++-++.|+|++|+|.--+...... ..+=-.||+ =|| -|.++.+.++
T Consensus 67 --~~P~~---~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~Gia----------------lnP-~T~~~~~~~~ 124 (201)
T PF00834_consen 67 --ENPER---YIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIA----------------LNP-ETPVEELEPY 124 (201)
T ss_dssp --SSGGG---HHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEE----------------E-T-TS-GGGGTTT
T ss_pred --ccHHH---HHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEE----------------EEC-CCCchHHHHH
Confidence 12344 44445788999999999744322221 122223333 255 3566777777
Q ss_pred HhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchH
Q 006395 370 CNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIP 431 (647)
Q Consensus 370 ~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~ 431 (647)
+..-|..+=+. .-||.-.-.-.+..+.-+..+-++.+... .++.++|-| -+-.+.|+
T Consensus 125 l~~vD~VlvMs--V~PG~~Gq~f~~~~~~KI~~l~~~~~~~~-~~~~I~vDG--GI~~~~~~ 181 (201)
T PF00834_consen 125 LDQVDMVLVMS--VEPGFGGQKFIPEVLEKIRELRKLIPENG-LDFEIEVDG--GINEENIK 181 (201)
T ss_dssp GCCSSEEEEES--S-TTTSSB--HGGHHHHHHHHHHHHHHHT-CGSEEEEES--SESTTTHH
T ss_pred hhhcCEEEEEE--ecCCCCcccccHHHHHHHHHHHHHHHhcC-CceEEEEEC--CCCHHHHH
Confidence 78889887775 56877665555555544444444433322 556666665 44444443
No 131
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=48.11 E-value=34 Score=36.35 Aligned_cols=63 Identities=24% Similarity=0.226 Sum_probs=40.4
Q ss_pred HHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEEe
Q 006395 241 YKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIH 320 (647)
Q Consensus 241 eKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGVDf~TIH 320 (647)
+-+..|+++|||.|| | ..-+..++|+.+-..- +.+| ++-.||. | .+.|++-|+-||||+.+=
T Consensus 205 eea~ea~~~gaDiI~-L-Dn~s~e~l~~av~~~~----~~~~----leaSGGI----~----~~ni~~yA~tGVD~Is~G 266 (281)
T PRK06106 205 DQLEEALELGVDAVL-L-DNMTPDTLREAVAIVA----GRAI----TEASGRI----T----PETAPAIAASGVDLISVG 266 (281)
T ss_pred HHHHHHHHcCCCEEE-e-CCCCHHHHHHHHHHhC----CCce----EEEECCC----C----HHHHHHHHhcCCCEEEeC
Confidence 345567899999998 3 3336677777764321 2334 2223332 2 377888899999999774
Q ss_pred c
Q 006395 321 A 321 (647)
Q Consensus 321 a 321 (647)
+
T Consensus 267 a 267 (281)
T PRK06106 267 W 267 (281)
T ss_pred h
Confidence 4
No 132
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=47.84 E-value=82 Score=33.68 Aligned_cols=105 Identities=21% Similarity=0.197 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEeccccccc-cccc-cCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHh
Q 006395 296 NLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRY-IPLT-AKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQY 373 (647)
Q Consensus 296 dlt~e~~~d~i~eQaeqGVDf~TIHaGv~~~~-~~~~-~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~Y 373 (647)
+++.+++.+..+.-.+.|+|++++|-++.... +... .....|-.| |-.+ .+..++.+-++.++.
T Consensus 221 ~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~S-G~~~-------------~~~~l~~v~~l~~~~ 286 (344)
T PRK05286 221 DLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLS-GRPL-------------FERSTEVIRRLYKEL 286 (344)
T ss_pred CCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcc-cHHH-------------HHHHHHHHHHHHHHh
Confidence 56777788877777778999999999863211 1110 011122222 1111 112445666776766
Q ss_pred --ceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCC
Q 006395 374 --DVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHI 425 (647)
Q Consensus 374 --DVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHV 425 (647)
++.|.- -|-|.++.|..++-+ .=+.++..++. .|.+||.-+
T Consensus 287 ~~~ipIig-----~GGI~s~eda~e~l~--aGAd~V~v~~~----~~~~gP~~~ 329 (344)
T PRK05286 287 GGRLPIIG-----VGGIDSAEDAYEKIR--AGASLVQIYSG----LIYEGPGLV 329 (344)
T ss_pred CCCCCEEE-----ECCCCCHHHHHHHHH--cCCCHHHHHHH----HHHhCchHH
Confidence 565553 356666666555543 22455555554 456677644
No 133
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=47.76 E-value=69 Score=31.09 Aligned_cols=23 Identities=17% Similarity=0.211 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhcCCCEEEEecc
Q 006395 300 EVFRDTLIEQAEQGVDYFTIHAG 322 (647)
Q Consensus 300 e~~~d~i~eQaeqGVDf~TIHaG 322 (647)
+++.+.+..-.+.||||++||.+
T Consensus 138 ~~~~~~~~~l~~~Gvd~i~v~~~ 160 (231)
T cd02801 138 EETLELAKALEDAGASALTVHGR 160 (231)
T ss_pred hHHHHHHHHHHHhCCCEEEECCC
Confidence 46666666666779999999975
No 134
>PRK09237 dihydroorotase; Provisional
Probab=47.65 E-value=28 Score=36.59 Aligned_cols=167 Identities=11% Similarity=0.076 Sum_probs=81.3
Q ss_pred HHHHHhCCCEeeecCC--CCChHHHHHHHHhcCCCcc-------ccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCC
Q 006395 244 QWATMWGADTVMDLST--GRHIHETREWILRNSAVPV-------GTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGV 314 (647)
Q Consensus 244 ~~A~~~GADtvMDLST--Ggdi~~~R~~Il~~spvPv-------GTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGV 314 (647)
+.|+..|.-||+|..+ ..+++.+++.+.+.+.+|+ +.+|+-... -.....++.+++.+.+.+. .+||
T Consensus 75 ~~~~~~G~Ttv~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~v 150 (380)
T PRK09237 75 EVGVRSGVTTVVDAGSAGADNFDDFRKLTIEASKTRVLAFLNISRIGLLAQDE---LADLEDIDADAVAEAVKRN-PDFI 150 (380)
T ss_pred HHHHhCCcCEEEECCCCCCCCHHHHHHHHHhhhCcEEEEEEeeecccccccch---hcCHhHCCHHHHHHHHHhC-cCcE
Confidence 4689999999999653 3477888888887654432 344442111 1123446777777766642 1233
Q ss_pred CEEEEeccccccccc---cccCcccCcccc-ccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccC
Q 006395 315 DYFTIHAGVLLRYIP---LTAKRMTGIVSR-GGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYD 390 (647)
Q Consensus 315 Df~TIHaGv~~~~~~---~~~~R~tgIVSR-GGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~D 390 (647)
--+-. .+.....+ ....++..++.+ -| .++.- |.+|+. ...++|++++++-++..=.-.|--...+.|
T Consensus 151 ~glk~--~~~~~v~~~~~~~~~~~~~~~a~~~g----~~v~~-H~~~~~-~~~~~l~~~l~~g~~~~H~~~~~~~~~~~~ 222 (380)
T PRK09237 151 VGIKA--RMSSSVVGDNGIEPLELAKAIAAEAN----LPLMV-HIGNPP-PSLEEILELLRPGDILTHCFNGKPNRILDE 222 (380)
T ss_pred EEEEE--EEecccccccCCchHHHHHHHHHhcC----CCEEE-EcCCCC-CCHHHHHhhccCCCEEEecCCCCCCCccCC
Confidence 22111 11111001 011111111111 00 01111 333332 446777777665444333333322223333
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhcCCeEEe-eCCCCCCCCchH
Q 006395 391 ANDTAQFAELLTQGELTRRAWDKDVQVMN-EGPGHIPMHKIP 431 (647)
Q Consensus 391 A~D~AQ~~EL~~LGEL~krA~e~gVQVMI-EGPGHVPl~~I~ 431 (647)
--+..+.++.+.+.|+.+++ +|.++.++..+.
T Consensus 223 ---------~~~~~~~a~~~l~~G~~~~ig~g~~~~~~~~~~ 255 (380)
T PRK09237 223 ---------DGELRPSVLEALERGVRLDVGHGTASFSFKVAE 255 (380)
T ss_pred ---------CCcchHHHHHHHHCCEEEEecCCCCcccHHHHH
Confidence 12233556667778999988 466677775543
No 135
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=47.54 E-value=2e+02 Score=28.66 Aligned_cols=86 Identities=13% Similarity=0.074 Sum_probs=56.7
Q ss_pred HHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEec--
Q 006395 302 FRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSI-- 379 (647)
Q Consensus 302 ~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlSL-- 379 (647)
|-++|++-++.|.|.+=+.. |+...-+++.+.+++|++.+|.
T Consensus 17 l~~~l~~~a~~Gf~~VEl~~------------------------------------~~~~~~~~~~~~l~~~gl~~~~~~ 60 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFMF------------------------------------PYDYDIEELKQVLASNKLEHTLHN 60 (258)
T ss_pred HHHHHHHHHHhCCCEEEEcC------------------------------------CCCCCHHHHHHHHHHcCCcEEEEc
Confidence 55667777888988887710 1223588999999999999984
Q ss_pred -c-CCCCCCC----ccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCC
Q 006395 380 -G-DGLRPGS----IYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIP 426 (647)
Q Consensus 380 -G-DGLRPG~----i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVP 426 (647)
+ .++.+++ ..++ +.++.. ..+-+..+.|.+.|+.+++=-+|..|
T Consensus 61 ~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~i~~a~~lga~~i~~~~g~~~ 110 (258)
T PRK09997 61 LPAGDWAAGERGIACIPG-REEEFR--DGVAAAIRYARALGNKKINCLVGKTP 110 (258)
T ss_pred CCCCccccCcCccccCCC-cHHHHH--HHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 1 1223332 3333 444433 34568889999999997765556544
No 136
>PRK01207 methionine synthase; Provisional
Probab=47.44 E-value=16 Score=39.64 Aligned_cols=91 Identities=23% Similarity=0.235 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhcCCCEEEEeccc-cccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEec
Q 006395 301 VFRDTLIEQAEQGVDYFTIHAGV-LLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSI 379 (647)
Q Consensus 301 ~~~d~i~eQaeqGVDf~TIHaGv-~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlSL 379 (647)
....+|..|-+.|+|++|+|=++ +-+.+.....++-|+...| |.. .||..| |---+=.
T Consensus 38 ai~~~v~~Qe~aGlDiv~~dGe~~R~dmv~~f~~~l~G~~~~g------~vr----------~y~~~~-----~r~Pii~ 96 (343)
T PRK01207 38 ATLETLDVFENAGLDNIGIGGEMFRWEMYEHPAERIKGIIFYG------MVR----------SFDNRY-----YRKGSII 96 (343)
T ss_pred HHHHHHHHHHHcCCCEEeeCCcEeechHHHHHHHhcCCeEecC------eEE----------Eecccc-----ccCCeEE
Confidence 45688999999999999999999 4455666788999987632 321 122211 3334444
Q ss_pred cCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCC
Q 006395 380 GDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPG 423 (647)
Q Consensus 380 GDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPG 423 (647)
||==|++. --+.|+.-+-+|++ +.|++|+-||=
T Consensus 97 g~i~~~~~-------~~v~e~~~a~~~t~----kpvK~~ltGP~ 129 (343)
T PRK01207 97 DRMERRSS-------FHLDEVEFVADNTK----KPIKVPITGPY 129 (343)
T ss_pred eeccCCCC-------CcHHHHHHHHHccC----CCcEEEecCHH
Confidence 55444432 23455555555543 89999999973
No 137
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=47.09 E-value=23 Score=42.10 Aligned_cols=100 Identities=19% Similarity=0.189 Sum_probs=73.3
Q ss_pred HHHHHHHHHhcCCCEEEEecccc----c--cccccccCcccCccccccHHHHHHHHHcCCcCchhhhH--HHHHHHHhHh
Q 006395 302 FRDTLIEQAEQGVDYFTIHAGVL----L--RYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHW--DEILDICNQY 373 (647)
Q Consensus 302 ~~d~i~eQaeqGVDf~TIHaGv~----~--~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~F--D~ileI~k~Y 373 (647)
++.+++.-...|...+.||-|.. - +.++++...+-+|-++||++| -..+-+|+-+.+ +.+++.+++|
T Consensus 19 Iravv~~a~~~g~~V~gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt~L-----GtsR~~~~~~~~~~~~~~~~L~~~ 93 (745)
T TIGR02478 19 VRAVVRMAIYVGCRVYAIREGYQGLVDGGDNIEEANWEDVRGILSLGGTII-----GTARCKEFRERPGRLKAARNLIKR 93 (745)
T ss_pred HHHHHHHHHHCCCEEEEEecCHHHHhcCCCCeEECCHHHHhhHHhCCCcee-----cCCCCCcccCHHHHHHHHHHHHHh
Confidence 45566666678999999999872 2 556677789999999999975 566777765544 8999999999
Q ss_pred cee--Eec-cCCCCCCCccCCCcHHH---------HHHHHHHHHHHHHHHhcC
Q 006395 374 DVA--LSI-GDGLRPGSIYDANDTAQ---------FAELLTQGELTRRAWDKD 414 (647)
Q Consensus 374 DVt--lSL-GDGLRPG~i~DA~D~AQ---------~~EL~~LGEL~krA~e~g 414 (647)
++. +-+ || |+.+.|+ ++||..-|++++.+.+.+
T Consensus 94 ~Id~LivIGGd--------gS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~ 138 (745)
T TIGR02478 94 GIDNLVVIGGD--------GSLTGADLFREEWPSLLEELVDTGKITAEQAEEH 138 (745)
T ss_pred CCCEEEEECCh--------hHHHHHHHHHHHhHHHHHHHHHccchhHHHHhcC
Confidence 874 344 44 3444443 578888888888888864
No 138
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=46.92 E-value=1.2e+02 Score=27.15 Aligned_cols=112 Identities=15% Similarity=0.220 Sum_probs=65.1
Q ss_pred HHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCC--HHHHHHHHHHHHhcCCCEEEEecc
Q 006395 245 WATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLS--WEVFRDTLIEQAEQGVDYFTIHAG 322 (647)
Q Consensus 245 ~A~~~GADtvMDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt--~e~~~d~i~eQaeqGVDf~TIHaG 322 (647)
.-.++|.++|.+|....... ....+-.=.+|+... ...++. .+...+.|++..++|- =+-|||-
T Consensus 21 ~l~~~gi~~Vi~l~~~~~~~-------~~~~~~~~~ipi~D~------~~~~~~~~~~~~~~~i~~~~~~~~-~VlVHC~ 86 (138)
T smart00195 21 LLKKLGITHVINVTNEVPNL-------NKKGFTYLGVPILDN------TETKISPYFPEAVEFIEDAEKKGG-KVLVHCQ 86 (138)
T ss_pred HHHHcCCCEEEEccCCCCCC-------CCCCCEEEEEECCCC------CCCChHHHHHHHHHHHHHHhcCCC-eEEEECC
Confidence 34457999999997765421 123344445555441 111221 2444555666555664 3668993
Q ss_pred ccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHH
Q 006395 323 VLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLT 402 (647)
Q Consensus 323 v~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~ 402 (647)
.| +||.|++++.|++....- .+++-++..+ ..||+..-. ..|+..|..
T Consensus 87 ---------~G-----~~RS~~v~~~yl~~~~~~-----~~~~A~~~v~----------~~R~~~~p~---~~~~~qL~~ 134 (138)
T smart00195 87 ---------AG-----VSRSATLIIAYLMKYRNL-----SLNDAYDFVK----------DRRPIISPN---FGFLRQLIE 134 (138)
T ss_pred ---------CC-----CchHHHHHHHHHHHHhCC-----CHHHHHHHHH----------HHCCccCCC---HhHHHHHHH
Confidence 22 589999999998876553 3566666666 357655543 345555543
No 139
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=46.91 E-value=1.4e+02 Score=29.55 Aligned_cols=64 Identities=9% Similarity=-0.072 Sum_probs=42.3
Q ss_pred hHHHHHHHHhHhceeEecc-CCC------CCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCC
Q 006395 362 HWDEILDICNQYDVALSIG-DGL------RPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPM 427 (647)
Q Consensus 362 ~FD~ileI~k~YDVtlSLG-DGL------RPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl 427 (647)
..++|.+.+++|+++++.- ..+ +.|...+..+...+. ..+-+..+.|.+.|+.++.=.+|..|-
T Consensus 40 ~~~~l~~~l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~a~~lg~~~i~~~~g~~~~ 110 (254)
T TIGR03234 40 DAEALKARLAAAGLEQVLFNLPAGDWAAGERGIACLPGREEEFR--EGVALAIAYARALGCPQVNCLAGKRPA 110 (254)
T ss_pred CHHHHHHHHHHcCCeEEEEeCCCCccccCCCccccCCccHHHHH--HHHHHHHHHHHHhCCCEEEECcCCCCC
Confidence 5799999999999998743 111 222222333333332 345578999999999988777887653
No 140
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=46.47 E-value=23 Score=37.20 Aligned_cols=51 Identities=22% Similarity=0.223 Sum_probs=31.2
Q ss_pred hHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEEecc
Q 006395 263 IHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAG 322 (647)
Q Consensus 263 i~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGVDf~TIHaG 322 (647)
+.++=+.+.++.++|| ||-| +.+ .+-+.+++++.+..-.+.||+++|||+=
T Consensus 110 ~~~iv~~~~~~~~~pv-svKi-----R~g---~~~~~~~~~~~~~~l~~~G~~~i~vH~R 160 (309)
T PF01207_consen 110 LAEIVKAVRKAVPIPV-SVKI-----RLG---WDDSPEETIEFARILEDAGVSAITVHGR 160 (309)
T ss_dssp HHHHHHHHHHH-SSEE-EEEE-----ESE---CT--CHHHHHHHHHHHHTT--EEEEECS
T ss_pred hhHHHHhhhcccccce-EEec-----ccc---cccchhHHHHHHHHhhhcccceEEEecC
Confidence 3445555666667666 4544 221 2235677899999999999999999995
No 141
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=46.41 E-value=1.2e+02 Score=32.02 Aligned_cols=130 Identities=18% Similarity=0.186 Sum_probs=67.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccc---cccc---ccc--ccCcccCccccccHHHHHHHHHcCCcCchhhhHHHH
Q 006395 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGV---LLRY---IPL--TAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEI 366 (647)
Q Consensus 295 ~dlt~e~~~d~i~eQaeqGVDf~TIHaGv---~~~~---~~~--~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~i 366 (647)
.+|+.|++++.+++ -|+-.++|+-|= ..+. +.. ..+..+.|++-| .++.+ ..+++
T Consensus 57 ~~ls~ee~~~~i~e---~g~~~V~i~GGEPLL~pdl~eiv~~~~~~g~~v~l~TNG-~ll~~-------------~~~~l 119 (318)
T TIGR03470 57 QRLSVEECLRAVDE---CGAPVVSIPGGEPLLHPEIDEIVRGLVARKKFVYLCTNA-LLLEK-------------KLDKF 119 (318)
T ss_pred cCCCHHHHHHHHHH---cCCCEEEEeCccccccccHHHHHHHHHHcCCeEEEecCc-eehHH-------------HHHHH
Confidence 46899999988775 488889887662 2221 111 123345566554 22211 12222
Q ss_pred HHHHhHhceeEeccCCCCCCCccCCCcH--HHHHHHHHHHHHHHHHHhcCCeEEeeC---CCCCCCCchHHHHHHHHHhc
Q 006395 367 LDICNQYDVALSIGDGLRPGSIYDANDT--AQFAELLTQGELTRRAWDKDVQVMNEG---PGHIPMHKIPENMQKQLEWC 441 (647)
Q Consensus 367 leI~k~YDVtlSLGDGLRPG~i~DA~D~--AQ~~EL~~LGEL~krA~e~gVQVMIEG---PGHVPl~~I~~nv~lqk~lc 441 (647)
.+ ..-..|.+|| ||++ ..+|..-. --|+. .-+-.+.+.++|++|.|.= ++ .-+++|.+-+++-+++
T Consensus 120 ~~-~~~~~i~VSL-DG~~--e~hd~~~~~~g~f~~---~l~~I~~l~~~G~~v~v~~tv~~~-~n~~ei~~~~~~~~~l- 190 (318)
T TIGR03470 120 EP-SPYLTFSVHL-DGLR--EHHDASVCREGVFDR---AVEAIREAKARGFRVTTNTTLFND-TDPEEVAEFFDYLTDL- 190 (318)
T ss_pred Hh-CCCcEEEEEE-ecCc--hhhchhhcCCCcHHH---HHHHHHHHHHCCCcEEEEEEEeCC-CCHHHHHHHHHHHHHc-
Confidence 11 0112377788 8864 56665311 12332 3355566667788766531 22 3456777777776664
Q ss_pred CCCCccccCc
Q 006395 442 NEAPFYTLGP 451 (647)
Q Consensus 442 ~~APfYvLGP 451 (647)
|.-.+.+-|
T Consensus 191 -Gv~~i~i~p 199 (318)
T TIGR03470 191 -GVDGMTISP 199 (318)
T ss_pred -CCCEEEEec
Confidence 444444443
No 142
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=46.38 E-value=3.1e+02 Score=27.30 Aligned_cols=64 Identities=11% Similarity=0.074 Sum_probs=44.5
Q ss_pred hHHHHHHHHhHhceeEec-c---CCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCC
Q 006395 362 HWDEILDICNQYDVALSI-G---DGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIP 426 (647)
Q Consensus 362 ~FD~ileI~k~YDVtlSL-G---DGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVP 426 (647)
..++|-+.+++|+++++. + +++ |-.+.+..++..-+.+..+-...+.|.+.|+.+|+=.|||..
T Consensus 48 ~~~~l~~~~~~~gl~v~s~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~ 115 (275)
T PRK09856 48 GIKQIKALAQTYQMPIIGYTPETNGY-PYNMMLGDEHMRRESLDMIKLAMDMAKEMNAGYTLISAAHAG 115 (275)
T ss_pred HHHHHHHHHHHcCCeEEEecCcccCc-CccccCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCCC
Confidence 468899999999999854 2 222 333444433322234566778889999999999999999853
No 143
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=46.17 E-value=13 Score=38.84 Aligned_cols=124 Identities=21% Similarity=0.246 Sum_probs=63.1
Q ss_pred HHHHHHHHHhCCCEee-ecCC---CCChHHHHHHH--HhcCCCc----cccchhhhHHHHhcC-ccCCCCHHHHHHHHHH
Q 006395 240 VYKVQWATMWGADTVM-DLST---GRHIHETREWI--LRNSAVP----VGTVPIYQALEKVDG-IAENLSWEVFRDTLIE 308 (647)
Q Consensus 240 veKl~~A~~~GADtvM-DLST---Ggdi~~~R~~I--l~~spvP----vGTVPIYqA~~k~~g-~~~dlt~e~~~d~i~e 308 (647)
++.++.|++.|.+.|| |-|. -.++..+|+-+ .+...++ +|+++ .+- ....| ...-=+.|+..+.++
T Consensus 87 ~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~g-g~e-d~~~g~~~~~t~~eea~~f~~- 163 (282)
T TIGR01859 87 YESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLG-GIE-DGVDEKEAELADPDEAEQFVK- 163 (282)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCc-Ccc-ccccccccccCCHHHHHHHHH-
Confidence 5688899999999998 3333 33343344322 1111121 23333 000 00000 001115555544443
Q ss_pred HHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEec--cCCCCCC
Q 006395 309 QAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSI--GDGLRPG 386 (647)
Q Consensus 309 QaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlSL--GDGLRPG 386 (647)
+.||||+++=.|-.-..- ++ .|-+ .||.|=+|+++.+|-|-+ |+|+-
T Consensus 164 --~tgvD~Lavs~Gt~hg~~-------~~-------------------~~~l-~~e~L~~i~~~~~iPlv~hGgSGi~-- 212 (282)
T TIGR01859 164 --ETGVDYLAAAIGTSHGKY-------KG-------------------EPGL-DFERLKEIKELTNIPLVLHGASGIP-- 212 (282)
T ss_pred --HHCcCEEeeccCcccccc-------CC-------------------CCcc-CHHHHHHHHHHhCCCEEEECCCCCC--
Confidence 359999997655211110 00 1222 388888888888887766 56763
Q ss_pred CccCCCcHHHHHHHHHHH
Q 006395 387 SIYDANDTAQFAELLTQG 404 (647)
Q Consensus 387 ~i~DA~D~AQ~~EL~~LG 404 (647)
..++.+++..|
T Consensus 213 -------~e~i~~~i~~G 223 (282)
T TIGR01859 213 -------EEQIKKAIKLG 223 (282)
T ss_pred -------HHHHHHHHHcC
Confidence 34666665543
No 144
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=45.93 E-value=97 Score=30.26 Aligned_cols=59 Identities=12% Similarity=0.001 Sum_probs=32.5
Q ss_pred HHHHhcCCCEEEEeccccccccc----c--ccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHh
Q 006395 307 IEQAEQGVDYFTIHAGVLLRYIP----L--TAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQY 373 (647)
Q Consensus 307 ~eQaeqGVDf~TIHaGv~~~~~~----~--~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~Y 373 (647)
+.-++.|+|++|+|+-...+.+. . ..+.-.|++- .+- .-....++-+++|.++.++.+-
T Consensus 74 ~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~-------~~~-~~~~~~~~~~~~~~v~~m~~e~ 138 (215)
T PRK13813 74 EAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVV-------EMS-HPGALEFIQPHADKLAKLAQEA 138 (215)
T ss_pred HHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEE-------eCC-CCCCCCCHHHHHHHHHHHHHHh
Confidence 55567899999999975434333 1 2244555543 110 0011123335678888877764
No 145
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=45.61 E-value=44 Score=35.99 Aligned_cols=120 Identities=16% Similarity=0.185 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCC--CccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcC
Q 006395 236 IEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSA--VPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQG 313 (647)
Q Consensus 236 ie~EveKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~~sp--vPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqG 313 (647)
+++=++.++.-+++|||.|-==... +.+++|+ +.++.+ +|+-.+.- |.--.+|.++| ++-|
T Consensus 165 ld~AI~Ra~AY~eAGAD~if~~al~-~~e~i~~-f~~av~~pl~~N~t~~--------g~tp~~~~~~L-------~~~G 227 (289)
T COG2513 165 LDDAIERAQAYVEAGADAIFPEALT-DLEEIRA-FAEAVPVPLPANITEF--------GKTPLLTVAEL-------AELG 227 (289)
T ss_pred HHHHHHHHHHHHHcCCcEEccccCC-CHHHHHH-HHHhcCCCeeeEeecc--------CCCCCcCHHHH-------HhcC
Confidence 8999999999999999999754444 4666654 344554 44443332 22244555444 7889
Q ss_pred CCEEEEeccccccccccccCcccCccccccHHHHHH-HHHcCCcCchhhhHHHHHHHHhHh
Q 006395 314 VDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKW-CLAYHKENFAYEHWDEILDICNQY 373 (647)
Q Consensus 314 VDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~W-ml~~~~ENplY~~FD~ileI~k~Y 373 (647)
|..+.+=.. ..+..-....+...-+.|+|++..-- -+.+.+|+..|.+|++..+.-.++
T Consensus 228 v~~V~~~~~-~~raa~~a~~~~~~~i~~~gt~~~~~d~m~~r~~l~~~~~y~~~~~~~~~~ 287 (289)
T COG2513 228 VKRVSYGLT-AFRAALKAAEQAAREIRREGTQANVLDKMQTRKELYDLINYYDYEAKDDEL 287 (289)
T ss_pred ceEEEECcH-HHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHhhcHHHHHHHHHhh
Confidence 999855433 33333334567777788888653221 123367888888888877665543
No 146
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=45.02 E-value=57 Score=34.56 Aligned_cols=175 Identities=18% Similarity=0.226 Sum_probs=85.1
Q ss_pred ChHHHHHHHHHHHHhCCCEe-eecCC--------CCCh----HHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHH
Q 006395 235 SIEEEVYKVQWATMWGADTV-MDLST--------GRHI----HETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEV 301 (647)
Q Consensus 235 ~ie~EveKl~~A~~~GADtv-MDLST--------Ggdi----~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~ 301 (647)
+.++=.+=++.+.++|||.| +.+|. |.++ .++=+++-+...+ |+. .|... ++ ++
T Consensus 110 ~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~i-----Pv~---vKl~p---~~--~~ 176 (325)
T cd04739 110 SAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTI-----PVA---VKLSP---FF--SA 176 (325)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCC-----CEE---EEcCC---Cc--cC
Confidence 44443455666678899987 33442 1122 3344455444443 332 12211 12 23
Q ss_pred HHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccC
Q 006395 302 FRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGD 381 (647)
Q Consensus 302 ~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlSLGD 381 (647)
+.+....-.+.|+|.+++|-.+....+.....+. +-.|| +.-...-|+ -.+-+-++.+..++.|.-
T Consensus 177 ~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~---~~~~g-------lSG~~~~~~--al~~v~~v~~~~~ipIig-- 242 (325)
T cd04739 177 LAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEV---VPNLL-------LSSPAEIRL--PLRWIAILSGRVKASLAA-- 242 (325)
T ss_pred HHHHHHHHHHcCCCeEEEEcCcCCCCccccccce---ecCCC-------cCCccchhH--HHHHHHHHHcccCCCEEE--
Confidence 4444444446699999999976433333211111 11122 111111121 123344555555666543
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeE----EeeCCCCCCCCchHHHHHHHHH-hcCCCCccccCcccccc
Q 006395 382 GLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQV----MNEGPGHIPMHKIPENMQKQLE-WCNEAPFYTLGPLTTDI 456 (647)
Q Consensus 382 GLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQV----MIEGPGHVPl~~I~~nv~lqk~-lc~~APfYvLGPLvTDI 456 (647)
-|.|.++.|..++-. |-...||| |.+||+-++ .|..+.+ +..
T Consensus 243 ---~GGI~s~~Da~e~l~----------aGA~~Vqv~ta~~~~gp~~~~------~i~~~L~~~l~-------------- 289 (325)
T cd04739 243 ---SGGVHDAEDVVKYLL----------AGADVVMTTSALLRHGPDYIG------TLLAGLEAWME-------------- 289 (325)
T ss_pred ---ECCCCCHHHHHHHHH----------cCCCeeEEehhhhhcCchHHH------HHHHHHHHHHH--------------
Confidence 356777777655431 34556665 567887332 2222211 111
Q ss_pred CCCchhHHHhHHH
Q 006395 457 APGYDHITSAIGA 469 (647)
Q Consensus 457 ApGYDHItsAIGa 469 (647)
.-||.+|.-++|.
T Consensus 290 ~~g~~~i~e~~G~ 302 (325)
T cd04739 290 EHGYESVQQLRGS 302 (325)
T ss_pred HcCCCCHHHHhcc
Confidence 4689999999994
No 147
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=44.51 E-value=54 Score=34.10 Aligned_cols=157 Identities=17% Similarity=0.177 Sum_probs=82.0
Q ss_pred CCCCChHHHHHHHHHHHHhCCCEe-eecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccC----CCCHHHHHHH
Q 006395 231 AVASSIEEEVYKVQWATMWGADTV-MDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAE----NLSWEVFRDT 305 (647)
Q Consensus 231 ~~~~~ie~EveKl~~A~~~GADtv-MDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~----dlt~e~~~d~ 305 (647)
++..++++|+.|+ +++|||-+ +|.-.|.- -..+.+|- |+-++|.+.-+... .|=.+.=.+.
T Consensus 14 ~dfanL~~e~~~~---l~~GadwlHlDVMDg~F----------VpNiT~G~-pvV~slR~~~~~~~ffD~HmMV~~Peq~ 79 (224)
T KOG3111|consen 14 SDFANLAAECKKM---LDAGADWLHLDVMDGHF----------VPNITFGP-PVVESLRKHTGADPFFDVHMMVENPEQW 79 (224)
T ss_pred cchHHHHHHHHHH---HHcCCCeEEEeeecccc----------cCCcccch-HHHHHHHhccCCCcceeEEEeecCHHHH
Confidence 3444566676666 67899975 33333321 11234443 77788877533211 1111111245
Q ss_pred HHHHHhcCCCEEEEecccccccccc-----ccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEecc
Q 006395 306 LIEQAEQGVDYFTIHAGVLLRYIPL-----TAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIG 380 (647)
Q Consensus 306 i~eQaeqGVDf~TIHaGv~~~~~~~-----~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlSLG 380 (647)
|..-|+.|++.||+|+-.+.+..++ ..+=..|++= || =|.-|.|...+..-|++|-.
T Consensus 80 V~~~a~agas~~tfH~E~~q~~~~lv~~ir~~Gmk~G~al----------------kP-gT~Ve~~~~~~~~~D~vLvM- 141 (224)
T KOG3111|consen 80 VDQMAKAGASLFTFHYEATQKPAELVEKIREKGMKVGLAL----------------KP-GTPVEDLEPLAEHVDMVLVM- 141 (224)
T ss_pred HHHHHhcCcceEEEEEeeccCHHHHHHHHHHcCCeeeEEe----------------CC-CCcHHHHHHhhccccEEEEE-
Confidence 6777999999999999987763332 2233444432 22 14456666666667776654
Q ss_pred CCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCC
Q 006395 381 DGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPM 427 (647)
Q Consensus 381 DGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl 427 (647)
..-||--.-.-=+.++.-... -|++....-||.=|-|-+
T Consensus 142 -tVePGFGGQkFme~mm~KV~~-------lR~kyp~l~ievDGGv~~ 180 (224)
T KOG3111|consen 142 -TVEPGFGGQKFMEDMMPKVEW-------LREKYPNLDIEVDGGVGP 180 (224)
T ss_pred -EecCCCchhhhHHHHHHHHHH-------HHHhCCCceEEecCCcCc
Confidence 345554433322222222222 235555555655554433
No 148
>PRK06354 pyruvate kinase; Provisional
Probab=43.92 E-value=1.3e+02 Score=35.13 Aligned_cols=97 Identities=22% Similarity=0.250 Sum_probs=60.7
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCEEEEecccccccccc-------ccCcccCccccccHHHHHHHHHcCCcCc-hhhhHHH
Q 006395 294 AENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPL-------TAKRMTGIVSRGGSIHAKWCLAYHKENF-AYEHWDE 365 (647)
Q Consensus 294 ~~dlt~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~-------~~~R~tgIVSRGGSi~a~Wml~~~~ENp-lY~~FD~ 365 (647)
...||+.|..| |.--+++||||+.+=.==+.+.+.. ..++-+.|++. =|++ -.+++|+
T Consensus 173 ~p~ltekD~~d-i~f~~~~~vD~ia~SFVr~~~dv~~~r~~l~~~~~~~~~iiaK-------------IEt~eav~nlde 238 (590)
T PRK06354 173 LPAITEKDRED-LIFGLEQGVDWIALSFVRNPSDVLEIRELIEEHNGKHIPIIAK-------------IEKQEAIDNIDA 238 (590)
T ss_pred CCCCCHHHHHH-HHHHHHcCCCEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEE-------------ECCHHHHHhHHH
Confidence 45689999888 6777899999998755323332321 11222223221 2332 3677888
Q ss_pred HHHHH-----hHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEe
Q 006395 366 ILDIC-----NQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMN 419 (647)
Q Consensus 366 ileI~-----k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMI 419 (647)
|++.+ .+.|..+++| ...+.+ .+-++.+.|+++|+.|++
T Consensus 239 I~~~~DgImVaRGDLgve~g-------------~e~v~~--~qk~ii~~~~~~gkpvI~ 282 (590)
T PRK06354 239 ILELCDGLMVARGDLGVEIP-------------AEEVPL--LQKRLIKKANRLGKPVIT 282 (590)
T ss_pred HHHhcCEEEEccchhhcccC-------------cHHHHH--HHHHHHHHHHHcCCCEEE
Confidence 88773 3566667776 223333 567899999999999986
No 149
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=43.62 E-value=1.5e+02 Score=31.38 Aligned_cols=28 Identities=21% Similarity=0.198 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEeccc
Q 006395 296 NLSWEVFRDTLIEQAEQGVDYFTIHAGV 323 (647)
Q Consensus 296 dlt~e~~~d~i~eQaeqGVDf~TIHaGv 323 (647)
.++.++.++.+..-.+.||||+.||.|-
T Consensus 237 g~~~~e~~~ia~~Le~~gvd~iev~~g~ 264 (336)
T cd02932 237 GWDLEDSVELAKALKELGVDLIDVSSGG 264 (336)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 3567888887777777899999999873
No 150
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=43.38 E-value=1.9e+02 Score=28.81 Aligned_cols=91 Identities=12% Similarity=0.029 Sum_probs=57.2
Q ss_pred hhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHH-HHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHH
Q 006395 360 YEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAEL-LTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQL 438 (647)
Q Consensus 360 Y~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL-~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~nv~lqk 438 (647)
.++|.+++++|++.++..=.--|.+.. .... +...+.++ ..|.+|+++|.++||.+.+|-=+.-=++....-.++.+
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~~~~-~~~~-~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~~~~~~~~~~~~~l~~ 170 (284)
T PRK13210 93 LEIMKKAIRLAQDLGIRTIQLAGYDVY-YEEK-SEETRQRFIEGLAWAVEQAAAAQVMLAVEIMDTPFMNSISKWKKWDK 170 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCcccc-cccc-cHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCccccCCHHHHHHHHH
Confidence 578999999999988765332222111 1111 23344443 45788999999999999999832212566677777777
Q ss_pred HhcCCCCccccCccccccC
Q 006395 439 EWCNEAPFYTLGPLTTDIA 457 (647)
Q Consensus 439 ~lc~~APfYvLGPLvTDIA 457 (647)
.+- .|. +| +.=|++
T Consensus 171 ~v~--~~~--~~-~~~D~~ 184 (284)
T PRK13210 171 EID--SPW--LT-VYPDVG 184 (284)
T ss_pred HcC--CCc--ee-EEecCC
Confidence 763 353 34 445654
No 151
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.36 E-value=48 Score=35.61 Aligned_cols=64 Identities=31% Similarity=0.379 Sum_probs=41.5
Q ss_pred HHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 006395 240 VYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTI 319 (647)
Q Consensus 240 veKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGVDf~TI 319 (647)
++-+..|+++|||.|| | ..-+.+++++.+-..- +.+. ++-.||. . .+.|.+-|+-||||+.+
T Consensus 215 leea~eA~~aGaDiIm-L-Dnmspe~l~~av~~~~----~~~~----lEaSGGI-t-------~~ni~~yA~tGVD~IS~ 276 (294)
T PRK06978 215 LAQLETALAHGAQSVL-L-DNFTLDMMREAVRVTA----GRAV----LEVSGGV-N-------FDTVRAFAETGVDRISI 276 (294)
T ss_pred HHHHHHHHHcCCCEEE-E-CCCCHHHHHHHHHhhc----CCeE----EEEECCC-C-------HHHHHHHHhcCCCEEEe
Confidence 5567778999999998 3 3447777777663221 1221 2222332 2 47888889999999976
Q ss_pred ec
Q 006395 320 HA 321 (647)
Q Consensus 320 Ha 321 (647)
=+
T Consensus 277 ga 278 (294)
T PRK06978 277 GA 278 (294)
T ss_pred Cc
Confidence 44
No 152
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=43.30 E-value=56 Score=33.32 Aligned_cols=120 Identities=22% Similarity=0.171 Sum_probs=81.3
Q ss_pred CCceeEeeccccCCCCCChHHHHHHHHHHHHhCCCE---eeecCC--CCChHHHHHHHHhcCCCccccchhhhHHHHhcC
Q 006395 218 NFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADT---VMDLST--GRHIHETREWILRNSAVPVGTVPIYQALEKVDG 292 (647)
Q Consensus 218 g~~tKVNANIGtS~~~~~ie~EveKl~~A~~~GADt---vMDLST--Ggdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g 292 (647)
+-.+||.+=||=.--....+.-+.-.+.|++.|||- |+++|- .+|++.+++.|-.-...- + |+ +-|+-=
T Consensus 55 ~~~v~v~tVigFP~G~~~~~~K~~e~~~Ai~~GA~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~-~--~~---~lKvIl 128 (221)
T PRK00507 55 GSDVKVCTVIGFPLGANTTAVKAFEAKDAIANGADEIDMVINIGALKSGDWDAVEADIRAVVEAA-G--GA---VLKVII 128 (221)
T ss_pred CCCCeEEEEecccCCCChHHHHHHHHHHHHHcCCceEeeeccHHHhcCCCHHHHHHHHHHHHHhc-C--Cc---eEEEEe
Confidence 345888888877666667777777888999999975 577663 357999988887544321 1 21 112211
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCCEEEEeccc-----ccccccc---ccCcccCcccccc
Q 006395 293 IAENLSWEVFRDTLIEQAEQGVDYFTIHAGV-----LLRYIPL---TAKRMTGIVSRGG 343 (647)
Q Consensus 293 ~~~dlt~e~~~d~i~eQaeqGVDf~TIHaGv-----~~~~~~~---~~~R~tgIVSRGG 343 (647)
..-+||.+++.+..+--.+-|+||+-.=.|. +.+.+.+ ..+.-+||..=||
T Consensus 129 Et~~L~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~~~~~~~IKasGG 187 (221)
T PRK00507 129 ETCLLTDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRETVGPRVGVKASGG 187 (221)
T ss_pred ecCcCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhCCCceEEeeCC
Confidence 2468999999999999999999999886665 4555543 2234467777776
No 153
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=43.28 E-value=80 Score=32.26 Aligned_cols=76 Identities=20% Similarity=0.208 Sum_probs=50.9
Q ss_pred CChHHHHHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcC
Q 006395 234 SSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQG 313 (647)
Q Consensus 234 ~~ie~EveKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqG 313 (647)
.++++=++.++.+.++|||.||=-.- .+.+++++ +.+..+.|+=-.+. -++. .++.++| .+-|
T Consensus 157 ~~~~eai~Ra~ay~~AGAD~v~v~~~-~~~~~~~~-~~~~~~~Pl~~~~~------~~~~--~~~~~~l-------~~lG 219 (243)
T cd00377 157 EGLDEAIERAKAYAEAGADGIFVEGL-KDPEEIRA-FAEAPDVPLNVNMT------PGGN--LLTVAEL-------AELG 219 (243)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCC-CCHHHHHH-HHhcCCCCEEEEec------CCCC--CCCHHHH-------HHCC
Confidence 47899999999999999999995432 26666554 45556666643211 0111 4566665 5669
Q ss_pred CCEEEEecccccc
Q 006395 314 VDYFTIHAGVLLR 326 (647)
Q Consensus 314 VDf~TIHaGv~~~ 326 (647)
|.+++++....+.
T Consensus 220 ~~~v~~~~~~~~~ 232 (243)
T cd00377 220 VRRVSYGLALLRA 232 (243)
T ss_pred CeEEEEChHHHHH
Confidence 9999998865443
No 154
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=43.26 E-value=93 Score=31.65 Aligned_cols=114 Identities=18% Similarity=0.181 Sum_probs=64.9
Q ss_pred cccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcC
Q 006395 278 VGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKEN 357 (647)
Q Consensus 278 vGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~EN 357 (647)
.-.|||=+.+.+ |. ..+.+++...+++-.+-|+|-+.+|.|..+...+. .+.=+++|.+=|+ -.
T Consensus 18 ~~~~aiDh~~l~--gp--~~~~~~~~~~~~~a~~~~~~~v~~~p~~~~~~~~~-~~~~~~~~~~~~~-----------~~ 81 (258)
T TIGR01949 18 TVIVPMDHGVSN--GP--IKGLVDIRKTVNEVAEGGADAVLLHKGIVRRGHRG-YGKDVGLIIHLSA-----------ST 81 (258)
T ss_pred EEEEECCCcccc--CC--CCCcCCHHHHHHHHHhcCCCEEEeCcchhhhcccc-cCCCCcEEEEEcC-----------CC
Confidence 345666666543 22 34788898988888888999999999987765443 2223445544321 02
Q ss_pred chh------hhHHHHHHHHh----HhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEe
Q 006395 358 FAY------EHWDEILDICN----QYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMN 419 (647)
Q Consensus 358 plY------~~FD~ileI~k----~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMI 419 (647)
|++ ..++++-+.++ ..++...+|+ .++..++ ..+.++.+.|.++|+-++|
T Consensus 82 ~~g~~~~~~~~~~~v~~al~~Ga~~v~~~~~~g~---------~~~~~~~---~~~~~i~~~~~~~g~~liv 141 (258)
T TIGR01949 82 SLSPDPNDKRIVTTVEDAIRMGADAVSIHVNVGS---------DTEWEQI---RDLGMIAEICDDWGVPLLA 141 (258)
T ss_pred CCCCCCCcceeeeeHHHHHHCCCCEEEEEEecCC---------chHHHHH---HHHHHHHHHHHHcCCCEEE
Confidence 222 12222333332 2344444441 2334444 3466677777888988887
No 155
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=43.24 E-value=95 Score=32.96 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEecc
Q 006395 300 EVFRDTLIEQAEQGVDYFTIHAG 322 (647)
Q Consensus 300 e~~~d~i~eQaeqGVDf~TIHaG 322 (647)
+++.+.+..-.+.|+|++|||..
T Consensus 149 ~~~~~~a~~le~~G~d~i~vh~r 171 (321)
T PRK10415 149 RNCVEIAQLAEDCGIQALTIHGR 171 (321)
T ss_pred chHHHHHHHHHHhCCCEEEEecC
Confidence 34555555556789999999973
No 156
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=42.81 E-value=3.6e+02 Score=26.96 Aligned_cols=102 Identities=19% Similarity=0.213 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhH----HHHHHHHhHhceeE
Q 006395 302 FRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHW----DEILDICNQYDVAL 377 (647)
Q Consensus 302 ~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~F----D~ileI~k~YDVtl 377 (647)
|...++.-.+.|+ .+++||+=..... |.. -..|++..+. ....|- |+.++++++.++.+
T Consensus 127 l~~~~~~A~~~g~-~v~~H~~e~~~~~-------------g~~-~i~~~~~~~~--~~i~H~~~l~~~~~~~la~~g~~v 189 (263)
T cd01305 127 LEDILELLRRRGK-LFAIHASETRESV-------------GMT-DIERALDLEP--DLLVHGTHLTDEDLELVRENGVPV 189 (263)
T ss_pred HHHHHHHHHHCCC-eeEEecCCCCCCC-------------Cch-hHHHHHhCCC--CEEEEcCCCCHHHHHHHHHcCCcE
Confidence 7777777777788 7789997543311 111 1223333311 122332 67899999999998
Q ss_pred ec--------cCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEee--CCCCCCCCchHHHHHHHHHhcC
Q 006395 378 SI--------GDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNE--GPGHIPMHKIPENMQKQLEWCN 442 (647)
Q Consensus 378 SL--------GDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIE--GPGHVPl~~I~~nv~lqk~lc~ 442 (647)
+. |.|+-| +++.+++||.|-+= ++..-+.+.+ ..|++....++
T Consensus 190 ~~~P~sn~~l~~g~~p---------------------~~~l~~~Gv~v~lGtD~~~~~~~~~~-~~~~~~~~~~~ 242 (263)
T cd01305 190 VLCPRSNLYFGVGIPP---------------------VAELLKLGIKVLLGTDNVMVNEPDMW-AEMEFLAKYSR 242 (263)
T ss_pred EEChhhHHHhCCCCCC---------------------HHHHHHCCCcEEEECCCCccCCCCHH-HHHHHHHHHhc
Confidence 84 444322 57888999999983 2334455544 35555544444
No 157
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=42.78 E-value=35 Score=42.14 Aligned_cols=81 Identities=19% Similarity=0.262 Sum_probs=59.2
Q ss_pred ch-hhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHH
Q 006395 358 FA-YEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQK 436 (647)
Q Consensus 358 pl-Y~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~nv~l 436 (647)
.+ |+.++++++.+++.|+++|+--. . + -.++++.|-++|+.+..|. .+.+.++.
T Consensus 633 ~lDv~D~e~L~~~v~~~DaVIsalP~----~---------~-----H~~VAkaAieaGkHvv~ek-------y~~~e~~~ 687 (1042)
T PLN02819 633 QLDVSDSESLLKYVSQVDVVISLLPA----S---------C-----HAVVAKACIELKKHLVTAS-------YVSEEMSA 687 (1042)
T ss_pred EeecCCHHHHHHhhcCCCEEEECCCc----h---------h-----hHHHHHHHHHcCCCEEECc-------CCHHHHHH
Confidence 44 78889999999999999997532 1 1 2678899999999999997 44556665
Q ss_pred HHHhcCCCCccccCccccccCCCchhHHH
Q 006395 437 QLEWCNEAPFYTLGPLTTDIAPGYDHITS 465 (647)
Q Consensus 437 qk~lc~~APfYvLGPLvTDIApGYDHIts 465 (647)
..+.|..|-.-++.-.- .+||+|||-+
T Consensus 688 L~e~Ak~AGV~~m~e~G--lDPGid~~lA 714 (1042)
T PLN02819 688 LDSKAKEAGITILCEMG--LDPGIDHMMA 714 (1042)
T ss_pred HHHHHHHcCCEEEECCc--cCHHHHHHHH
Confidence 66667666654444333 8999999654
No 158
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=42.43 E-value=4.4 Score=39.49 Aligned_cols=92 Identities=23% Similarity=0.216 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccccccccccccCcccC--ccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhH-hcee
Q 006395 300 EVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTG--IVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQ-YDVA 376 (647)
Q Consensus 300 e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tg--IVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~-YDVt 376 (647)
..++..+.+...+|-..+-+-.. .+.|... ||||-|.-+... ...-..|.++.++... |||.
T Consensus 16 ~eLi~~~~~~~~~~~~v~~~kp~--------~D~R~~~~~I~s~~g~~~~~~-------~~~~~~~~~~~~~~~~~~dvI 80 (176)
T PF00265_consen 16 TELIRRIHRYEIAGKKVLVFKPA--------IDTRYGEDKIVSHDGISLEAI-------VDPIDNLFEIIDILENDYDVI 80 (176)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEES--------TSCCCCSSEEEHTTSCEEEEE-------SSEESSGGGGGGGCCTTCSEE
T ss_pred HHHHHHHHHHHhCCCeEEEEEec--------ccCcCCCCeEEecCCCccccc-------ccchhhHHHHHHHhccCCCEE
Confidence 56777777777888887755443 3456554 899988655444 2233345555555555 8887
Q ss_pred EeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeC
Q 006395 377 LSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEG 421 (647)
Q Consensus 377 lSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEG 421 (647)
+ -|++||=+ ..+-+|++.+.++|+-|++=|
T Consensus 81 ~--------------IDEaQFf~-~~i~~l~~~~~~~g~~Vi~~G 110 (176)
T PF00265_consen 81 G--------------IDEAQFFD-EQIVQLVEILANKGIPVICAG 110 (176)
T ss_dssp E--------------ESSGGGST-TTHHHHHHHHHHTT-EEEEEE
T ss_pred E--------------EechHhhH-HHHHHHHHHHHhCCCeEEEEe
Confidence 5 59999988 778889999999999999987
No 159
>PRK13207 ureC urease subunit alpha; Reviewed
Probab=42.24 E-value=95 Score=36.20 Aligned_cols=58 Identities=28% Similarity=0.401 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccC
Q 006395 302 FRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGD 381 (647)
Q Consensus 302 ~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlSLGD 381 (647)
-++.|++|.++|+++|-+|..- | -+ ...++++|+.+++||+.+.+
T Consensus 202 ~~~~L~e~i~aGA~gfKi~~d~-------------------g------------~t--~~~l~~aL~~A~~~gv~V~i-- 246 (568)
T PRK13207 202 LPEALEEQIEAGAIGLKLHEDW-------------------G------------AT--PAAIDNCLSVADEYDVQVAI-- 246 (568)
T ss_pred cHHHHHHHHHcCCCEEeecCCC-------------------C------------CC--HHHHHHHHHHHHHhCCEEEE--
Confidence 3577889999999999999310 1 02 36889999999999998874
Q ss_pred CCCCCCccCCCcHHHHHHH
Q 006395 382 GLRPGSIYDANDTAQFAEL 400 (647)
Q Consensus 382 GLRPG~i~DA~D~AQ~~EL 400 (647)
=.|..+++-|.|.
T Consensus 247 ------Ha~tlne~G~~e~ 259 (568)
T PRK13207 247 ------HTDTLNESGFVED 259 (568)
T ss_pred ------eCCCcccchHHHH
Confidence 3444455555555
No 160
>PRK06852 aldolase; Validated
Probab=41.73 E-value=35 Score=36.68 Aligned_cols=179 Identities=12% Similarity=0.055 Sum_probs=95.0
Q ss_pred HHHHHHHHHhcCCCEEEEeccccccccccccCcccCcccc--ccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEec
Q 006395 302 FRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSR--GGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSI 379 (647)
Q Consensus 302 ~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSR--GGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlSL 379 (647)
+..+++.-.+.|+|-+..|-|+.+.+.+.. +-++++=| |++-+.. ...-+|++ -++-|.
T Consensus 61 p~~~i~~~~~~g~dav~~~~G~l~~~~~~~--~~~~lIlkl~~~t~l~~----~~~~~p~~-------------~l~~sV 121 (304)
T PRK06852 61 PEHLFRIASKAKIGVFATQLGLIARYGMDY--PDVPYLVKLNSKTNLVK----TSQRDPLS-------------RQLLDV 121 (304)
T ss_pred HHHHHHHHHhcCCCEEEeCHHHHHhhcccc--CCCcEEEEECCCCCcCC----cccCCccc-------------cceecH
Confidence 334455555679999999999987765432 12333322 2221110 00002321 123334
Q ss_pred cCCCCCCCc----cCCC-------cHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccc
Q 006395 380 GDGLRPGSI----YDAN-------DTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYT 448 (647)
Q Consensus 380 GDGLRPG~i----~DA~-------D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~nv~lqk~lc~~APfYv 448 (647)
=|.+|-||- +||- +..+.+.|..|+++++.|.++|+-+|+. -|.
T Consensus 122 eeAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~-------------------------~yp 176 (304)
T PRK06852 122 EQVVEFKENSGLNILGVGYTIYLGSEYESEMLSEAAQIIYEAHKHGLIAVLW-------------------------IYP 176 (304)
T ss_pred HHHHhcCCccCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEE-------------------------eec
Confidence 445554433 3331 3445678889999999999999999972 244
Q ss_pred cCccccccCCCchhHHHhHHHHHhhhcccceeeecCchhhcCCCChhHHHHHHHHHHHHHhHhhhhcCCcchhhHHHHHH
Q 006395 449 LGPLTTDIAPGYDHITSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPLAQTWDDALS 528 (647)
Q Consensus 449 LGPLvTDIApGYDHItsAIGaA~aa~~Gad~LCYVTPaEHLgLP~~eDVreGViA~kIAAHaaDlaKg~p~A~~rD~~mS 528 (647)
.||-+.|-- ..|-|.-|. =+++-.|||++---=|.-|.. -+.|..++ |+++ +..+-=|..|.|..-+ +..+.
T Consensus 177 rG~~i~~~~-~~~~ia~aa--RiaaELGADIVKv~y~~~~~~-g~~e~f~~-vv~~--~g~vpVviaGG~k~~~-~e~L~ 248 (304)
T PRK06852 177 RGKAVKDEK-DPHLIAGAA--GVAACLGADFVKVNYPKKEGA-NPAELFKE-AVLA--AGRTKVVCAGGSSTDP-EEFLK 248 (304)
T ss_pred cCcccCCCc-cHHHHHHHH--HHHHHHcCCEEEecCCCcCCC-CCHHHHHH-HHHh--CCCCcEEEeCCCCCCH-HHHHH
Confidence 466554321 123444444 578899999997544432222 23466666 3331 1133334557666532 23444
Q ss_pred HHHh
Q 006395 529 KARF 532 (647)
Q Consensus 529 ~AR~ 532 (647)
..|.
T Consensus 249 ~v~~ 252 (304)
T PRK06852 249 QLYE 252 (304)
T ss_pred HHHH
Confidence 4443
No 161
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=41.71 E-value=94 Score=32.91 Aligned_cols=87 Identities=17% Similarity=0.129 Sum_probs=46.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHh--
Q 006395 296 NLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQY-- 373 (647)
Q Consensus 296 dlt~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~Y-- 373 (647)
+++.|++.+....-.+.|+|++++|..+.-.. ... +...-...|| + ..+. -.+..++.+-++.+..
T Consensus 212 ~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~-~~~--~~~~~~~~gG-~-------sG~~-~~~~~l~~v~~l~~~~~~ 279 (327)
T cd04738 212 DLSDEELEDIADVALEHGVDGIIATNTTISRP-GLL--RSPLANETGG-L-------SGAP-LKERSTEVLRELYKLTGG 279 (327)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEECCccccc-ccc--cccccCCCCc-c-------CChh-hhHHHHHHHHHHHHHhCC
Confidence 45667787777776778999999998653211 100 1111111122 0 0000 0124456677777777
Q ss_pred ceeEeccCCCCCCCccCCCcHHHHHHHHH
Q 006395 374 DVALSIGDGLRPGSIYDANDTAQFAELLT 402 (647)
Q Consensus 374 DVtlSLGDGLRPG~i~DA~D~AQ~~EL~~ 402 (647)
++.+.---|++- ..+..|++.
T Consensus 280 ~ipIi~~GGI~t--------~~da~e~l~ 300 (327)
T cd04738 280 KIPIIGVGGISS--------GEDAYEKIR 300 (327)
T ss_pred CCcEEEECCCCC--------HHHHHHHHH
Confidence 677776566753 345555554
No 162
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=41.69 E-value=1.3e+02 Score=34.20 Aligned_cols=97 Identities=22% Similarity=0.139 Sum_probs=59.9
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCEEEEecccccccccc------ccCcccCccccccHHHHHHHHHcCCcCc-hhhhHHHH
Q 006395 294 AENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPL------TAKRMTGIVSRGGSIHAKWCLAYHKENF-AYEHWDEI 366 (647)
Q Consensus 294 ~~dlt~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~------~~~R~tgIVSRGGSi~a~Wml~~~~ENp-lY~~FD~i 366 (647)
...||+.|..| |.--++.||||+.+=.==+.+.+.. ..++-+.|+.. =|++ -++++|+|
T Consensus 169 ~p~ltekD~~d-i~f~~~~~vD~ia~SFV~~~~di~~~r~~l~~~~~~~~iiak-------------IEt~~av~nldeI 234 (480)
T cd00288 169 LPALSEKDKAD-LRFGVEQGVDMIFASFVRKASDVLEIREVLGEKGKDIKIIAK-------------IENQEGVNNFDEI 234 (480)
T ss_pred CCCCCHHHHHH-HHHHHHcCCCEEEECCCCCHHHHHHHHHHHHhcCCCceEEEE-------------ECCHHHHHhHHHH
Confidence 45588888776 6677899999998755323333321 11222223321 1332 36788888
Q ss_pred HHHH-----hHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEe
Q 006395 367 LDIC-----NQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMN 419 (647)
Q Consensus 367 leI~-----k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMI 419 (647)
++.+ .+.|..+++|. ..+.+ .+.++.+.|+++|+.|++
T Consensus 235 ~~~~DgImIargDLg~e~g~-------------~~v~~--~qk~ii~~~~~~gkpvi~ 277 (480)
T cd00288 235 LEASDGIMVARGDLGVEIPA-------------EEVFL--AQKMLIAKCNLAGKPVIT 277 (480)
T ss_pred HHhcCEEEECcchhhhhcCh-------------HHHHH--HHHHHHHHHHHcCCCEEE
Confidence 8873 35667777771 22222 567899999999999886
No 163
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=41.57 E-value=52 Score=35.34 Aligned_cols=64 Identities=33% Similarity=0.424 Sum_probs=40.3
Q ss_pred HHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 006395 240 VYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTI 319 (647)
Q Consensus 240 veKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGVDf~TI 319 (647)
++-+..|+++|||-|| |=+- +..++++.+-... +.+. ++-.||. | .+.|++-|+-||||+.+
T Consensus 218 leea~ea~~~gaDiI~-LDn~-s~e~~~~av~~~~----~~~~----ieaSGGI----~----~~ni~~yA~tGVD~Is~ 279 (296)
T PRK09016 218 LDELDQALKAGADIIM-LDNF-TTEQMREAVKRTN----GRAL----LEVSGNV----T----LETLREFAETGVDFISV 279 (296)
T ss_pred HHHHHHHHHcCCCEEE-eCCC-ChHHHHHHHHhhc----CCeE----EEEECCC----C----HHHHHHHHhcCCCEEEe
Confidence 4456678999999998 4333 4677777664321 1221 2222332 2 47888889999999976
Q ss_pred ec
Q 006395 320 HA 321 (647)
Q Consensus 320 Ha 321 (647)
=+
T Consensus 280 ga 281 (296)
T PRK09016 280 GA 281 (296)
T ss_pred Cc
Confidence 44
No 164
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=41.18 E-value=2.6e+02 Score=31.37 Aligned_cols=133 Identities=16% Similarity=0.269 Sum_probs=70.4
Q ss_pred ccCCCCHHHHHHHHHHHHh-cCCCEEEEecc---ccccccccccCccc-CccccccHHHHHHHHHcCCcCchhhhHHHHH
Q 006395 293 IAENLSWEVFRDTLIEQAE-QGVDYFTIHAG---VLLRYIPLTAKRMT-GIVSRGGSIHAKWCLAYHKENFAYEHWDEIL 367 (647)
Q Consensus 293 ~~~dlt~e~~~d~i~eQae-qGVDf~TIHaG---v~~~~~~~~~~R~t-gIVSRGGSi~a~Wml~~~~ENplY~~FD~il 367 (647)
..-.-+.|.+.+.|+...+ .||.+|.+.-. ++++.+. ++. .|+.|| .+-..|.....-.+-+- -+++|
T Consensus 218 ~~R~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~----~l~~~l~~~~-~l~i~w~~~~r~~~i~~--d~ell 290 (497)
T TIGR02026 218 RYRHRDPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQ----EFCEEIIARN-PISVTWGINTRVTDIVR--DADIL 290 (497)
T ss_pred eeecCCHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHH----HHHHHHHhcC-CCCeEEEEecccccccC--CHHHH
Confidence 4455688999999998764 69998876432 2222111 111 122232 11123432222222111 25788
Q ss_pred HHHhHhce-eEeccCCCCCCCccCCCcHHHHHHH------HHHHHHHHHHHhcCCe----EEeeCCCCCCCCchHHHHHH
Q 006395 368 DICNQYDV-ALSIGDGLRPGSIYDANDTAQFAEL------LTQGELTRRAWDKDVQ----VMNEGPGHIPMHKIPENMQK 436 (647)
Q Consensus 368 eI~k~YDV-tlSLGDGLRPG~i~DA~D~AQ~~EL------~~LGEL~krA~e~gVQ----VMIEGPGHVPl~~I~~nv~l 436 (647)
+.+++..+ .+++| + ++.|...+..+ ...-+.++.++++|+. .|+=-||. -...++++++.
T Consensus 291 ~~l~~aG~~~v~iG--i------ES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~e-t~e~~~~t~~~ 361 (497)
T TIGR02026 291 HLYRRAGLVHISLG--T------EAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFENE-TDETFEETYRQ 361 (497)
T ss_pred HHHHHhCCcEEEEc--c------ccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCC-CHHHHHHHHHH
Confidence 99988886 57775 2 22222122111 1234567778888874 45544775 55677778777
Q ss_pred HHHhc
Q 006395 437 QLEWC 441 (647)
Q Consensus 437 qk~lc 441 (647)
-+++.
T Consensus 362 ~~~l~ 366 (497)
T TIGR02026 362 LLDWD 366 (497)
T ss_pred HHHcC
Confidence 66643
No 165
>TIGR02033 D-hydantoinase D-hydantoinase. This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme.
Probab=41.17 E-value=4.8e+02 Score=28.00 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=14.5
Q ss_pred HHHHHHhCCCEeeecCCC
Q 006395 243 VQWATMWGADTVMDLSTG 260 (647)
Q Consensus 243 l~~A~~~GADtvMDLSTG 260 (647)
.+.|++.|.-||+|....
T Consensus 77 s~~a~~~GvTtv~d~~~~ 94 (454)
T TIGR02033 77 TKAAAAGGTTTIIDFALP 94 (454)
T ss_pred HHHHHhCCCCEEEeCcCC
Confidence 356889999999997643
No 166
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=41.04 E-value=80 Score=34.19 Aligned_cols=77 Identities=22% Similarity=0.154 Sum_probs=51.0
Q ss_pred ChHHHHHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCC-cc------ccchhhhHHHHhcCccCCCCHHHHHHHHH
Q 006395 235 SIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAV-PV------GTVPIYQALEKVDGIAENLSWEVFRDTLI 307 (647)
Q Consensus 235 ~ie~EveKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~~spv-Pv------GTVPIYqA~~k~~g~~~dlt~e~~~d~i~ 307 (647)
|++.=.+=.+.|.++|||+|=-= |- ..+. -+.++.+- +. ...++|+-+++ ..|++|.+....+
T Consensus 14 dl~~A~~lI~~A~~aGadaVKfQ-t~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~e~~~~L~~ 83 (329)
T TIGR03569 14 SLELAKKLVDAAAEAGADAVKFQ-TF-KAED---LVSKNAPKAEYQKINTGAEESQLEMLKK-----LELSEEDHRELKE 83 (329)
T ss_pred cHHHHHHHHHHHHHhCCCEEEee-eC-CHHH---hhCcccccccccccCCcCCCcHHHHHHH-----hCCCHHHHHHHHH
Confidence 66666677889999999998422 21 1111 12222211 00 23578998877 4599999999888
Q ss_pred HHHhcCCCEEEEec
Q 006395 308 EQAEQGVDYFTIHA 321 (647)
Q Consensus 308 eQaeqGVDf~TIHa 321 (647)
..-+.|++|||==.
T Consensus 84 ~~~~~Gi~~~stpf 97 (329)
T TIGR03569 84 YCESKGIEFLSTPF 97 (329)
T ss_pred HHHHhCCcEEEEeC
Confidence 88899999998543
No 167
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=40.83 E-value=12 Score=37.05 Aligned_cols=83 Identities=19% Similarity=0.193 Sum_probs=49.6
Q ss_pred HHHHHHHHhCCCEe-eecCCC----------CChHHHHHHHHhcCCCccccc-hhhhHHHHhcCccCCCCHHHHHHHHHH
Q 006395 241 YKVQWATMWGADTV-MDLSTG----------RHIHETREWILRNSAVPVGTV-PIYQALEKVDGIAENLSWEVFRDTLIE 308 (647)
Q Consensus 241 eKl~~A~~~GADtv-MDLSTG----------gdi~~~R~~Il~~spvPvGTV-PIYqA~~k~~g~~~dlt~e~~~d~i~e 308 (647)
+.+..+.+.|.|.| +.++.- .++.++|+++ +...|++-.. |.|--+.......-+-+.+.|.+.|+-
T Consensus 14 ~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~-~~~gl~ls~h~p~~~nl~s~d~~~r~~~~~~l~~~i~~ 92 (273)
T smart00518 14 KAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEAL-KENNIDVSVHAPYLINLASPDKEKVEKSIERLIDEIKR 92 (273)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH-HHcCCCEEEECCceecCCCCCHHHHHHHHHHHHHHHHH
Confidence 46778889999988 222211 2366676664 4445655321 433111111111223445778888988
Q ss_pred HHhcCCCEEEEecccc
Q 006395 309 QAEQGVDYFTIHAGVL 324 (647)
Q Consensus 309 QaeqGVDf~TIHaGv~ 324 (647)
-.+-|.+++++|.|..
T Consensus 93 A~~lGa~~vv~h~g~~ 108 (273)
T smart00518 93 CEELGIKALVFHPGSY 108 (273)
T ss_pred HHHcCCCEEEEccccc
Confidence 8899999999999853
No 168
>PRK08185 hypothetical protein; Provisional
Probab=40.82 E-value=33 Score=36.36 Aligned_cols=32 Identities=25% Similarity=0.234 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhCCCEee----ecCCCCChHHHHHHH
Q 006395 239 EVYKVQWATMWGADTVM----DLSTGRHIHETREWI 270 (647)
Q Consensus 239 EveKl~~A~~~GADtvM----DLSTGgdi~~~R~~I 270 (647)
.++.++.|++.|.++|| +|+.-.||..+|+-+
T Consensus 80 ~~e~i~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~vv 115 (283)
T PRK08185 80 TIEDVMRAIRCGFTSVMIDGSLLPYEENVALTKEVV 115 (283)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 35667889999999999 566666777777655
No 169
>PRK03906 mannonate dehydratase; Provisional
Probab=40.81 E-value=1.9e+02 Score=32.05 Aligned_cols=134 Identities=16% Similarity=0.167 Sum_probs=76.3
Q ss_pred ccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCc-C
Q 006395 279 GTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKE-N 357 (647)
Q Consensus 279 GTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~E-N 357 (647)
-+||+-+.+. .++.--|=--|.+.++|+.-++.||..++... .- .+..+..++ .-.-||||-...+-...=.. .
T Consensus 63 Es~pv~~~Ik-~g~~~rd~~ie~y~~sirnlg~~GI~~icYnf-mp--v~dwtrt~l-~~~~~~ga~~l~f~~~~~~~~~ 137 (385)
T PRK03906 63 ESVPVHEDIK-TGTPNRDRYIENYKQTLRNLAAAGIKVVCYNF-MP--VFDWTRTDL-AYELPDGSTALRFDQIDFAAFD 137 (385)
T ss_pred eCCCccHHHH-cCCCCHHHHHHHHHHHHHHHHhcCCcEEEecC-cc--cccccCccc-cccCCCCchhhhcchhhHhhcC
Confidence 4566656543 23322333347788999999999999998876 21 122222222 24468999877763322111 1
Q ss_pred c-------------------hhhhHHHHHHHH-hHhceeEeccCCCCCCCc--------------cCCCcHHHHHHHH--
Q 006395 358 F-------------------AYEHWDEILDIC-NQYDVALSIGDGLRPGSI--------------YDANDTAQFAELL-- 401 (647)
Q Consensus 358 p-------------------lY~~FD~ileI~-k~YDVtlSLGDGLRPG~i--------------~DA~D~AQ~~EL~-- 401 (647)
| -.+.|+..++.. .+-..++=+ +| ||.- +..-|+.|.-|-.
T Consensus 138 ~~~l~~~~~~~~~~~~~~~~a~~~f~~~~~~~~~~L~~~~i~--~l-pG~~~~~~~~~~~~~~~~y~~i~~e~lw~~l~~ 214 (385)
T PRK03906 138 PHILKRPGAEADYGEEEIAQAAARFAAMSEEDKARLTRNIIA--GL-PGWEEPYTLEQFRALLELYKDIDEEKLRENLAY 214 (385)
T ss_pred HHHhcccchhhcCCHHHHHHHHHHHHhCCHHHHHHhhccEEE--eC-CCCCccccHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 1 123444444442 222222211 22 6633 3345666665543
Q ss_pred HHHHHHHHHHhcCCeEEee
Q 006395 402 TQGELTRRAWDKDVQVMNE 420 (647)
Q Consensus 402 ~LGEL~krA~e~gVQVMIE 420 (647)
.|.+++..|.++||++-||
T Consensus 215 fL~~v~p~Aee~GV~Laih 233 (385)
T PRK03906 215 FLKAIIPVAEEVGVKMAIH 233 (385)
T ss_pred HHHHHHHHHHHcCCEEEEe
Confidence 4889999999999999999
No 170
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.60 E-value=47 Score=35.01 Aligned_cols=69 Identities=22% Similarity=0.211 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEE
Q 006395 239 EVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFT 318 (647)
Q Consensus 239 EveKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGVDf~T 318 (647)
.+|-+..|.++|||.|| | ..-+..++++.+-.. .---..+. + .+-|.+ |. +.+.+-|+-|||++.
T Consensus 191 tleea~~A~~~GaDiI~-L-Dn~~~e~l~~~v~~~-~~~~~~~~----i-eAsGgI---t~----~ni~~ya~~GvD~Is 255 (273)
T PRK05848 191 SLEEAKNAMNAGADIVM-C-DNMSVEEIKEVVAYR-NANYPHVL----L-EASGNI---TL----ENINAYAKSGVDAIS 255 (273)
T ss_pred CHHHHHHHHHcCCCEEE-E-CCCCHHHHHHHHHHh-hccCCCeE----E-EEECCC---CH----HHHHHHHHcCCCEEE
Confidence 35667789999999999 4 566888888877421 10001221 1 122333 44 567777999999998
Q ss_pred Eecc
Q 006395 319 IHAG 322 (647)
Q Consensus 319 IHaG 322 (647)
+=+-
T Consensus 256 vG~l 259 (273)
T PRK05848 256 SGSL 259 (273)
T ss_pred eChh
Confidence 7553
No 171
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=39.54 E-value=9.2 Score=40.58 Aligned_cols=89 Identities=26% Similarity=0.361 Sum_probs=54.7
Q ss_pred ChHHHHHHHHHHHHhCCCEeeecCC---CCChHHHHHHHHhcCCCcccc-chhhhHHHHhcCccCCCCHHHHHHHHHHHH
Q 006395 235 SIEEEVYKVQWATMWGADTVMDLST---GRHIHETREWILRNSAVPVGT-VPIYQALEKVDGIAENLSWEVFRDTLIEQA 310 (647)
Q Consensus 235 ~ie~EveKl~~A~~~GADtvMDLST---Ggdi~~~R~~Il~~spvPvGT-VPIYqA~~k~~g~~~dlt~e~~~d~i~eQa 310 (647)
+++.-++.|+..-.+|..||.|.++ |.|...+|+ |=+.|-|.|=+ -=.|..- -.-..+..++.|+|-+.+.+..
T Consensus 36 ~~~~~~~El~~~k~~Gg~tiVd~T~~g~GRd~~~l~~-is~~tGv~II~~TG~y~~~-~~p~~~~~~s~e~la~~~i~Ei 113 (308)
T PF02126_consen 36 DVEAAVAELKEFKAAGGRTIVDATPIGLGRDVEALRE-ISRRTGVNIIASTGFYKEP-FYPEWVREASVEELADLFIREI 113 (308)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEE--SGGGTB-HHHHHH-HHHHHT-EEEEEEEE-SGG-CSCHHHHTSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCEEEecCCcccCcCHHHHHH-HHHHhCCeEEEeCCCCccc-cCChhhhcCCHHHHHHHHHHHH
Confidence 5555566777777899999999998 778876665 45566665421 1122210 0011346778899999999999
Q ss_pred hcCCCEEEEeccccc
Q 006395 311 EQGVDYFTIHAGVLL 325 (647)
Q Consensus 311 eqGVDf~TIHaGv~~ 325 (647)
+.|+|-..|.||+-.
T Consensus 114 ~~GidgT~ikaG~Ik 128 (308)
T PF02126_consen 114 EEGIDGTGIKAGIIK 128 (308)
T ss_dssp HT-STTSSB-ESEEE
T ss_pred HhcCCCCccchhhee
Confidence 999996666555543
No 172
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]
Probab=39.19 E-value=1.3e+02 Score=32.26 Aligned_cols=111 Identities=20% Similarity=0.154 Sum_probs=80.6
Q ss_pred HcCCCHHHHHHHHhc---ceEEEecCCCCCCCCceEeecCCceeEeeccccCCCCCChHHHHHHHHHHH-HhCCCEeeec
Q 006395 182 REKLDPEFVRAEVAR---GRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWAT-MWGADTVMDL 257 (647)
Q Consensus 182 ~E~i~pE~vR~~VA~---GraVIPaN~nh~~~~p~~IG~g~~tKVNANIGtS~~~~~ie~EveKl~~A~-~~GADtvMDL 257 (647)
-.|+++|.|.+-+++ +..|=|+|.|-| ...++= ...+.|+|+...+ +.|+...+.|
T Consensus 136 v~gl~~e~v~~~~~~~~~~~~v~iaN~N~~-~QiVIs-------------------G~~~ale~a~~~~~~~g~kr~i~l 195 (310)
T COG0331 136 VLGLDDEQVEKACEEAAQGTVVEIANYNSP-GQIVIS-------------------GTKEALEKAAEILKEAGAKRAIPL 195 (310)
T ss_pred HcCCCHHHHHHHHHHhccCCeEEEeeeCCC-CcEEEE-------------------CCHHHHHHHHHHHHHhhhhhhccc
Confidence 356788888766654 447889999986 444444 4467788876544 5677877779
Q ss_pred CCCCChHH---------HHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEE
Q 006395 258 STGRHIHE---------TREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYF 317 (647)
Q Consensus 258 STGgdi~~---------~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGVDf~ 317 (647)
.-++..|. ++ ..|.+..+.-..+|+++-.... ..++.+.+++.+.+|.-.-|+|+
T Consensus 196 ~vs~pfHs~lm~pa~~~~~-~~l~~~~~~~~~ipvi~n~~~~----~~~~~~~i~~~L~~q~~~pVrW~ 259 (310)
T COG0331 196 PVSGPFHSPLMKPAADELA-EALEKVRFSDPLVPVISNVDAK----PVLDGEEIRELLAKQLTSPVRWT 259 (310)
T ss_pred CCCchhhhhhhHHHHHHHH-HHHHhcCCCCccceeeeccccc----cccCHHHHHHHHHHHhcCCeeHH
Confidence 99999875 33 4567788888899998865432 22788999999999998888873
No 173
>PRK08417 dihydroorotase; Provisional
Probab=38.76 E-value=77 Score=34.00 Aligned_cols=60 Identities=20% Similarity=0.120 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCccccccCCCchhHHHhHHHHHhhh
Q 006395 395 AQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGA 474 (647)
Q Consensus 395 AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~nv~lqk~lc~~APfYvLGPLvTDIApGYDHItsAIGaA~aa~ 474 (647)
.-++|...+.+..+-|++.|.++ +-.|++++=+--++..
T Consensus 176 p~~aE~~~v~~~~~la~~~~~~l-----------------------------------------hi~hvS~~~~~~~i~~ 214 (386)
T PRK08417 176 PSIAETKEVAKMKELAKFYKNKV-----------------------------------------LFDTLALPRSLELLDK 214 (386)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCE-----------------------------------------EEEeCCCHHHHHHHHH
Confidence 34677778888888888888776 5578888777665533
Q ss_pred ---cccceeeecCchhhcCCCChhHH
Q 006395 475 ---LGTALLCYVTPKEHLGLPNRDDV 497 (647)
Q Consensus 475 ---~Gad~LCYVTPaEHLgLP~~eDV 497 (647)
-|..+-|=|||- ||-|- .+|+
T Consensus 215 ak~~g~~vt~ev~ph-~L~l~-~~~~ 238 (386)
T PRK08417 215 FKSEGEKLLKEVSIH-HLILD-DSAC 238 (386)
T ss_pred HHHCCCCEEEEechH-HHeeC-HHHh
Confidence 588899999984 78775 4455
No 174
>PRK05927 hypothetical protein; Provisional
Probab=38.49 E-value=32 Score=37.15 Aligned_cols=49 Identities=18% Similarity=0.124 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHhcceEEEecCCCCCCCCceEeecCCceeEeeccccCCCCCChHHHHHHHHHHHHhCCCEeee
Q 006395 184 KLDPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTVMD 256 (647)
Q Consensus 184 ~i~pE~vR~~VA~GraVIPaN~nh~~~~p~~IG~g~~tKVNANIGtS~~~~~ie~EveKl~~A~~~GADtvMD 256 (647)
..+++...+-||--|+++| |++|+..-.+.. =.+..+.|+.+|||-+|=
T Consensus 255 ~~s~~e~Lr~iAv~Rl~lp-~~~~i~~~w~~~-----------------------G~~~~q~~L~~GanDlgg 303 (350)
T PRK05927 255 QASPELYYRILAVARIFLD-NFDHIAASWFGE-----------------------GKEEGAKGLHYGADDFGG 303 (350)
T ss_pred CCCHHHHHHHHHHHHHhCC-CCCcccCCcccc-----------------------CHHHHHHHHhCCCccccC
Confidence 5899999999999999999 888843322221 134678899999998873
No 175
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=38.21 E-value=29 Score=35.79 Aligned_cols=27 Identities=11% Similarity=0.156 Sum_probs=20.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecc
Q 006395 296 NLSWEVFRDTLIEQAEQGVDYFTIHAG 322 (647)
Q Consensus 296 dlt~e~~~d~i~eQaeqGVDf~TIHaG 322 (647)
-++.+.|++.|..-|.-+...+-+|-.
T Consensus 14 ~~~~~~ik~~id~ma~~k~N~lhlhl~ 40 (351)
T PF00728_consen 14 FFSVDTIKRLIDQMAYYKLNVLHLHLS 40 (351)
T ss_dssp -B-HHHHHHHHHHHHHTT-SEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEEe
Confidence 467788889899999999998888874
No 176
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=38.20 E-value=2.3e+02 Score=31.70 Aligned_cols=215 Identities=17% Similarity=0.296 Sum_probs=132.8
Q ss_pred EeecCCceeEeeccccCCCCCChHHHHHHHHHHHHhCCCE----eeecCCCCChHHHHHHHHhcCCCccccchhhhHHHH
Q 006395 214 IVGRNFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADT----VMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEK 289 (647)
Q Consensus 214 ~IG~g~~tKVNANIGtS~~~~~ie~EveKl~~A~~~GADt----vMDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k 289 (647)
.||-+--+-|-.= |..++.|++.-++....-.++|+|- |-|.-....|.+|++.+ ++|+
T Consensus 21 ~iGg~~Pi~VQSM--t~t~T~Dv~atv~Qi~~L~~aGceiVRvav~~~~~a~al~~I~~~~----~iPl----------- 83 (360)
T PRK00366 21 PIGGDAPIVVQSM--TNTDTADVEATVAQIKRLARAGCEIVRVAVPDMEAAAALPEIKKQL----PVPL----------- 83 (360)
T ss_pred eECCCCcEEEEec--CCCCchhHHHHHHHHHHHHHcCCCEEEEccCCHHHHHhHHHHHHcC----CCCE-----------
Confidence 3444444444322 4667899999999999999999995 45655555666666554 5554
Q ss_pred hcCccCCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHH
Q 006395 290 VDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDI 369 (647)
Q Consensus 290 ~~g~~~dlt~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI 369 (647)
+.|+--+- ....+.++.|||-+-|-.|= . |+ .-++|.++.+.
T Consensus 84 ----vADIHFd~--~lAl~a~~~G~~~iRINPGN-i-----------------g~--------------~~~~v~~vv~~ 125 (360)
T PRK00366 84 ----VADIHFDY--RLALAAAEAGADALRINPGN-I-----------------GK--------------RDERVREVVEA 125 (360)
T ss_pred ----EEecCCCH--HHHHHHHHhCCCEEEECCCC-C-----------------Cc--------------hHHHHHHHHHH
Confidence 12222211 33455688999999777762 1 11 24789999999
Q ss_pred HhHhceeEeccCCCCCCCccCC--------CcHHHHHHHHHHHHHHHHHHhcCCeEEeeC-CCCCCCCchHHHHHHHHHh
Q 006395 370 CNQYDVALSIGDGLRPGSIYDA--------NDTAQFAELLTQGELTRRAWDKDVQVMNEG-PGHIPMHKIPENMQKQLEW 440 (647)
Q Consensus 370 ~k~YDVtlSLGDGLRPG~i~DA--------~D~AQ~~EL~~LGEL~krA~e~gVQVMIEG-PGHVPl~~I~~nv~lqk~l 440 (647)
||+|++.+=+| .=-||+..- +-+|-++ .--+-++.+.+.|-.=++=. =-+=+...|++|-.+.++
T Consensus 126 ak~~~ipIRIG--vN~GSL~~~~~~~yg~~t~eamve---SAl~~~~~le~~~f~~iviS~KsS~v~~~i~ayrlla~~- 199 (360)
T PRK00366 126 AKDYGIPIRIG--VNAGSLEKDLLEKYGEPTPEALVE---SALRHAKILEELGFDDIKISVKASDVQDLIAAYRLLAKR- 199 (360)
T ss_pred HHHCCCCEEEe--cCCccChHHHHHHcCCCCHHHHHH---HHHHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHHHHhc-
Confidence 99999998775 345555311 1111111 11123444455544322222 134456678899888866
Q ss_pred cCCCCccccCccccccCCCchhH---HHhHHHHHhhhcccceeeecCchhhcCCCChhHHHH
Q 006395 441 CNEAPFYTLGPLTTDIAPGYDHI---TSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKA 499 (647)
Q Consensus 441 c~~APfYvLGPLvTDIApGYDHI---tsAIGaA~aa~~Gad~LCYVTPaEHLgLP~~eDVre 499 (647)
|+ -||. ==||--.++.+=+ +.+||..+.---|--+-.-+|.. | .++|+-
T Consensus 200 ~d-yPLH---lGvTEAG~~~~G~iKSa~gig~LL~~GIGDTiRVSLt~~-----P-~~EV~v 251 (360)
T PRK00366 200 CD-YPLH---LGVTEAGMGFKGTVKSAAGLGALLQEGIGDTIRVSLTAD-----P-VEEVKV 251 (360)
T ss_pred CC-CCce---ecccCCCCCCCceehhHHHHHHHHHhcCCCeEEEeCCCC-----C-HHHHHH
Confidence 54 4443 3388888888854 56788888888888888887742 3 566654
No 177
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=38.05 E-value=25 Score=37.18 Aligned_cols=73 Identities=16% Similarity=0.250 Sum_probs=42.4
Q ss_pred HHHHHHHHHhCCCEee----ecCCCCChHHHHHHH--HhcCCCccccchhhhH-HHHhcC---cc---C-CCCHHHHHHH
Q 006395 240 VYKVQWATMWGADTVM----DLSTGRHIHETREWI--LRNSAVPVGTVPIYQA-LEKVDG---IA---E-NLSWEVFRDT 305 (647)
Q Consensus 240 veKl~~A~~~GADtvM----DLSTGgdi~~~R~~I--l~~spvPvGTVPIYqA-~~k~~g---~~---~-dlt~e~~~d~ 305 (647)
++.+..|++.|.++|| +|+.-.||..+|+-. -+...+++ ++ +.+.+| .+ . .=+.|+-.+.
T Consensus 89 ~~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~v------E~ElG~i~g~ed~~~g~s~~t~peea~~f 162 (293)
T PRK07315 89 YEDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISV------EAEVGTIGGEEDGIIGKGELAPIEDAKAM 162 (293)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEE------EEecCcccCcCccccCccCCCCHHHHHHH
Confidence 5578899999999999 455555666677654 23334554 11 112222 01 1 1345554443
Q ss_pred HHHHHhcCCCEEEEecc
Q 006395 306 LIEQAEQGVDYFTIHAG 322 (647)
Q Consensus 306 i~eQaeqGVDf~TIHaG 322 (647)
+ +.||||+.+=.|
T Consensus 163 ~----~tgvD~LAv~iG 175 (293)
T PRK07315 163 V----ETGIDFLAAGIG 175 (293)
T ss_pred H----HcCCCEEeeccc
Confidence 3 689999977644
No 178
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=37.84 E-value=4.6e+02 Score=26.98 Aligned_cols=105 Identities=15% Similarity=0.100 Sum_probs=65.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHh-
Q 006395 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQY- 373 (647)
Q Consensus 295 ~dlt~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~Y- 373 (647)
.+++++-+.+.++...+.|||-+.+ +|-+-+..-++ -++..+++|++.++
T Consensus 17 g~iD~~~l~~~i~~l~~~Gv~gi~~-~Gs~GE~~~ls----------------------------~~Er~~~~~~~~~~~ 67 (292)
T PRK03170 17 GSVDFAALRKLVDYLIANGTDGLVV-VGTTGESPTLT----------------------------HEEHEELIRAVVEAV 67 (292)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEE-CCcCCccccCC----------------------------HHHHHHHHHHHHHHh
Confidence 4699999999999999999999987 67666655443 23445566666654
Q ss_pred --ceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCe-EEeeCCCCCCCCchHHHHHHHHHhcCC
Q 006395 374 --DVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQ-VMNEGPGHIPMHKIPENMQKQLEWCNE 443 (647)
Q Consensus 374 --DVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQ-VMIEGPGHVPl~~I~~nv~lqk~lc~~ 443 (647)
++.+- .|..+.++ ...-++++.|.+.|+. ||+--|-..+..+ ++=++--+++|..
T Consensus 68 ~~~~~vi------~gv~~~~~--------~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~-~~i~~~~~~ia~~ 125 (292)
T PRK03170 68 NGRVPVI------AGTGSNST--------AEAIELTKFAEKAGADGALVVTPYYNKPTQ-EGLYQHFKAIAEA 125 (292)
T ss_pred CCCCcEE------eecCCchH--------HHHHHHHHHHHHcCCCEEEECCCcCCCCCH-HHHHHHHHHHHhc
Confidence 22222 12222222 3334677888888988 6665565556554 4444545555543
No 179
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=37.80 E-value=2.9e+02 Score=27.23 Aligned_cols=149 Identities=17% Similarity=0.141 Sum_probs=83.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhc
Q 006395 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYD 374 (647)
Q Consensus 295 ~dlt~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YD 374 (647)
..++.++.++.+..-.+.|||++-+=-+...+.+|. .+...++++-+++..
T Consensus 14 ~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~-----------------------------~~~~~~~i~~l~~~~ 64 (265)
T cd03174 14 ATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQ-----------------------------MEDDWEVLRAIRKLV 64 (265)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeccCcCcccccc-----------------------------CCCHHHHHHHHHhcc
Confidence 568999999999999999999998877766544432 133444444444443
Q ss_pred --eeE-eccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEE-eeCCCC---------C----CCCchHHHHHHH
Q 006395 375 --VAL-SIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVM-NEGPGH---------I----PMHKIPENMQKQ 437 (647)
Q Consensus 375 --Vtl-SLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVM-IEGPGH---------V----Pl~~I~~nv~lq 437 (647)
+.+ .|. |.| -+.+++|++.|+..+ |=.+++ . =++++...++..
T Consensus 65 ~~~~~~~l~---~~~-----------------~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a 124 (265)
T cd03174 65 PNVKLQALV---RNR-----------------EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAA 124 (265)
T ss_pred CCcEEEEEc---cCc-----------------hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 444 333 222 445666667664322 222222 0 134455555555
Q ss_pred HHhcCCCCccccCcccccc---CCCchhHHHhHHHHHhhhcccceeeecCchhhcCCCChhHHHHHHH
Q 006395 438 LEWCNEAPFYTLGPLTTDI---APGYDHITSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKAGVI 502 (647)
Q Consensus 438 k~lc~~APfYvLGPLvTDI---ApGYDHItsAIGaA~aa~~Gad~LCYVTPaEHLgLP~~eDVreGVi 502 (647)
|+.. +. +-.-++|+ +--+|.+...+=-+ ..+|++.+|.. -..|.-++++|++=+-
T Consensus 125 ~~~G----~~-v~~~~~~~~~~~~~~~~l~~~~~~~--~~~g~~~i~l~---Dt~G~~~P~~v~~li~ 182 (265)
T cd03174 125 KEAG----LE-VEGSLEDAFGCKTDPEYVLEVAKAL--EEAGADEISLK---DTVGLATPEEVAELVK 182 (265)
T ss_pred HHCC----Ce-EEEEEEeecCCCCCHHHHHHHHHHH--HHcCCCEEEec---hhcCCcCHHHHHHHHH
Confidence 5532 21 11111122 23455566554433 35689988864 2377788888776543
No 180
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=37.65 E-value=55 Score=33.00 Aligned_cols=56 Identities=23% Similarity=0.153 Sum_probs=44.4
Q ss_pred hhHHHHHHHHhHh---------ceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCch
Q 006395 361 EHWDEILDICNQY---------DVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKI 430 (647)
Q Consensus 361 ~~FD~ileI~k~Y---------DVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I 430 (647)
--.|+|++.++++ .||||=|+-+ .|.. -+-+|.+++++.|+.+-||=-|++|...+
T Consensus 19 ~t~eel~~~~~~~~~f~~~sggGVt~SGGEPl-----------lq~~---fl~~l~~~~k~~gi~~~leTnG~~~~~~~ 83 (213)
T PRK10076 19 ITLDALEREVMKDDIFFRTSGGGVTLSGGEVL-----------MQAE---FATRFLQRLRLWGVSCAIETAGDAPASKL 83 (213)
T ss_pred cCHHHHHHHHHhhhHhhcCCCCEEEEeCchHH-----------cCHH---HHHHHHHHHHHcCCCEEEECCCCCCHHHH
Confidence 4579999999987 8999999865 3443 34567777888999999999999996444
No 181
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=37.50 E-value=4e+02 Score=26.02 Aligned_cols=85 Identities=16% Similarity=0.133 Sum_probs=49.0
Q ss_pred HHHHHHHhcCCeEEe-eCC---CCCCCC--chHHHHHHHHHhcCCCCccccCccccccCCCchhHHHhHHHHHhhhcccc
Q 006395 405 ELTRRAWDKDVQVMN-EGP---GHIPMH--KIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTA 478 (647)
Q Consensus 405 EL~krA~e~gVQVMI-EGP---GHVPl~--~I~~nv~lqk~lc~~APfYvLGPLvTDIApGYDHItsAIGaA~aa~~Gad 478 (647)
+.++++.++|+..++ .|+ ||.--. ...+.++.-++.+ +-|++.-|=+.+ .+++.-++- +|||
T Consensus 113 ~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~-~~Pvi~~GGI~~-----~~~v~~~l~------~Gad 180 (236)
T cd04730 113 EEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV-DIPVIAAGGIAD-----GRGIAAALA------LGAD 180 (236)
T ss_pred HHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh-CCCEEEECCCCC-----HHHHHHHHH------cCCc
Confidence 444556667777654 443 554321 2334455444444 479998886544 366766662 5788
Q ss_pred eeeecCc-hhhcCCCChhHHHHHH
Q 006395 479 LLCYVTP-KEHLGLPNRDDVKAGV 501 (647)
Q Consensus 479 ~LCYVTP-aEHLgLP~~eDVreGV 501 (647)
.++.-|. ..+...|...++|+=+
T Consensus 181 gV~vgS~l~~~~e~~~~~~~~~~~ 204 (236)
T cd04730 181 GVQMGTRFLATEESGASPAYKQAL 204 (236)
T ss_pred EEEEchhhhcCcccCCCHHHHHHH
Confidence 7776654 2344556666666543
No 182
>PRK05826 pyruvate kinase; Provisional
Probab=37.49 E-value=1.1e+02 Score=34.77 Aligned_cols=94 Identities=22% Similarity=0.237 Sum_probs=58.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCC---------cCc-hhhhHH
Q 006395 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHK---------ENF-AYEHWD 364 (647)
Q Consensus 295 ~dlt~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~---------ENp-lY~~FD 364 (647)
..||+.+..+ |..-++.|+||+.+=.==+.+.+... ..++...+. |++ -++++|
T Consensus 169 p~lte~D~~~-i~~ald~g~d~I~~sfV~saedv~~l---------------~~~l~~~~~~~~~iiakIEt~eav~nld 232 (465)
T PRK05826 169 PALTEKDKAD-IKFAAEQGVDYIAVSFVRSAEDVEEA---------------RRLLREAGCPHAKIIAKIERAEAVDNID 232 (465)
T ss_pred CCCChhhHHH-HHHHHHCCCCEEEECCCCCHHHHHHH---------------HHHHHHcCCcCceEEEEEcCHHHHHhHH
Confidence 4567777655 56778999999976543344444322 144444443 232 367788
Q ss_pred HHHHHH-----hHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEe
Q 006395 365 EILDIC-----NQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMN 419 (647)
Q Consensus 365 ~ileI~-----k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMI 419 (647)
+|++.. ..+|..++|| ...+.++ +-++.+.|+++|+.|++
T Consensus 233 eI~~~~DgImIgrgDLg~elg-------------~~~v~~~--qk~Ii~~c~~~gKpvi~ 277 (465)
T PRK05826 233 EIIEASDGIMVARGDLGVEIP-------------DEEVPGL--QKKIIRKAREAGKPVIT 277 (465)
T ss_pred HHHHHcCEEEECcchhhhhcC-------------cHhHHHH--HHHHHHHHHHcCCCEEE
Confidence 888762 3455566676 1234432 36888999999999987
No 183
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=37.45 E-value=34 Score=34.60 Aligned_cols=60 Identities=25% Similarity=0.283 Sum_probs=46.3
Q ss_pred CchhhhHHHHHHHHhHhceeEecc-CCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCC
Q 006395 357 NFAYEHWDEILDICNQYDVALSIG-DGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIP 426 (647)
Q Consensus 357 NplY~~FD~ileI~k~YDVtlSLG-DGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVP 426 (647)
.++|+.+++|++.++++++.|=+= -|||-|.- |..-.-++.+++.+.||.|.+=-=-|.|
T Consensus 181 ~~~~~~~~~il~~~~~~g~~lEiNt~g~r~~~~----------~~yP~~~il~~~~~~g~~itlgSDAH~~ 241 (253)
T TIGR01856 181 DEVYELLQRILKLVASQGKALEFNTSGLRKPLE----------EAYPSKELLNLAKELGIPLVLGSDAHGP 241 (253)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEcHhhcCCCC----------CCCCCHHHHHHHHHcCCCEEecCCCCCH
Confidence 447888999999999999998442 27887544 3444457889999999998886667887
No 184
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=36.77 E-value=1.5e+02 Score=30.57 Aligned_cols=78 Identities=18% Similarity=0.167 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhcee
Q 006395 297 LSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVA 376 (647)
Q Consensus 297 lt~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVt 376 (647)
+|.++..+.+.+-.+.|+||+.+|.|-....... .+. ... +-...++.+-.|.+..++.
T Consensus 225 ~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~--------~~~------------~~~-~~~~~~~~~~~ir~~~~iP 283 (327)
T cd02803 225 LTLEEAIEIAKALEEAGVDALHVSGGSYESPPPI--------IPP------------PYV-PEGYFLELAEKIKKAVKIP 283 (327)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccc--------cCC------------CCC-CcchhHHHHHHHHHHCCCC
Confidence 6788999999988999999999999853211110 000 011 1123445666677777888
Q ss_pred EeccCCCCCCCccCCCcHHHHHHHHHH
Q 006395 377 LSIGDGLRPGSIYDANDTAQFAELLTQ 403 (647)
Q Consensus 377 lSLGDGLRPG~i~DA~D~AQ~~EL~~L 403 (647)
+..+-|++ +..++.+++..
T Consensus 284 Vi~~Ggi~--------t~~~a~~~l~~ 302 (327)
T cd02803 284 VIAVGGIR--------DPEVAEEILAE 302 (327)
T ss_pred EEEeCCCC--------CHHHHHHHHHC
Confidence 88776665 34555555543
No 185
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=36.67 E-value=1.3e+02 Score=32.13 Aligned_cols=81 Identities=11% Similarity=0.119 Sum_probs=51.2
Q ss_pred CChHHHHHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcC
Q 006395 234 SSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQG 313 (647)
Q Consensus 234 ~~ie~EveKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqG 313 (647)
.++++=++.++...++|||.|+==+ -.+++++++ +.+..+.|+ ++ ..+ .++..-.+|.++| .+-|
T Consensus 162 ~g~deaI~Ra~aY~eAGAD~ifi~~-~~~~~ei~~-~~~~~~~P~--~~--nv~--~~~~~p~~s~~eL-------~~lG 226 (294)
T TIGR02319 162 FGLDEAIRRSREYVAAGADCIFLEA-MLDVEEMKR-VRDEIDAPL--LA--NMV--EGGKTPWLTTKEL-------ESIG 226 (294)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEecC-CCCHHHHHH-HHHhcCCCe--eE--EEE--ecCCCCCCCHHHH-------HHcC
Confidence 3689999999999999999999533 245555554 333444443 00 111 1233344555444 6789
Q ss_pred CCEEEEeccccccccc
Q 006395 314 VDYFTIHAGVLLRYIP 329 (647)
Q Consensus 314 VDf~TIHaGv~~~~~~ 329 (647)
|.++++++...+....
T Consensus 227 ~~~v~~~~~~~~aa~~ 242 (294)
T TIGR02319 227 YNLAIYPLSGWMAAAS 242 (294)
T ss_pred CcEEEEcHHHHHHHHH
Confidence 9999999876554443
No 186
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=36.67 E-value=1.9e+02 Score=28.76 Aligned_cols=144 Identities=19% Similarity=0.205 Sum_probs=85.4
Q ss_pred ChHHHHHHHHHHHHhCCCEeeecC----CCCChHHHHHHHHhcCC----CccccchhhhHHHHhcCcc---CCCCHHHHH
Q 006395 235 SIEEEVYKVQWATMWGADTVMDLS----TGRHIHETREWILRNSA----VPVGTVPIYQALEKVDGIA---ENLSWEVFR 303 (647)
Q Consensus 235 ~ie~EveKl~~A~~~GADtvMDLS----TGgdi~~~R~~Il~~sp----vPvGTVPIYqA~~k~~g~~---~dlt~e~~~ 303 (647)
+.++=.+-++.|++.|...+ |-+ .|..-..+.+.+ +..+ +-|- -|.+... .+.+.+.++
T Consensus 27 ~~~~~~~~l~~A~~~Gi~~i-DTA~~Yg~g~sE~~lG~al-~~~~~R~~~~i~--------tK~~~~~~~~~~~~~~~~~ 96 (285)
T cd06660 27 DEEEAAAAVRAALDAGINFI-DTADVYGDGESEELLGEAL-KERGPREEVFIA--------TKVGPRPGDGRDLSPEHIR 96 (285)
T ss_pred CHHHHHHHHHHHHHcCCCeE-ECccccCCCCCHHHHHHHH-hccCCcCcEEEE--------eeecCCCCCCCCCCHHHHH
Confidence 44555666889999998876 544 122334444443 3321 1111 1221111 336788888
Q ss_pred HHHHHHHhc----CCCEEEEecccc-----ccc---cc--cccC--cccCccccccHHHHHHHHHc--------CCcCch
Q 006395 304 DTLIEQAEQ----GVDYFTIHAGVL-----LRY---IP--LTAK--RMTGIVSRGGSIHAKWCLAY--------HKENFA 359 (647)
Q Consensus 304 d~i~eQaeq----GVDf~TIHaGv~-----~~~---~~--~~~~--R~tgIVSRGGSi~a~Wml~~--------~~ENpl 359 (647)
+.|++..+. =+|.+-+|.=-. .+. ++ +.++ |..||-+-+...+.+.+... -.=||+
T Consensus 97 ~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~ 176 (285)
T cd06660 97 RAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLL 176 (285)
T ss_pred HHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCHHHHHHHHHhhCCCceEEecccCcc
Confidence 888877653 377888887211 111 11 1233 77888887877777776552 234888
Q ss_pred hhhHH-HHHHHHhHhceeEe----ccCCCCCCCc
Q 006395 360 YEHWD-EILDICNQYDVALS----IGDGLRPGSI 388 (647)
Q Consensus 360 Y~~FD-~ileI~k~YDVtlS----LGDGLRPG~i 388 (647)
+..++ .+++.|+++++.+- ||-|+..+..
T Consensus 177 ~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~ 210 (285)
T cd06660 177 DRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKY 210 (285)
T ss_pred cCchHHHHHHHHHHcCcEEEEeccccCceecCCC
Confidence 87777 79999999999884 5555544443
No 187
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=36.12 E-value=5.2e+02 Score=26.91 Aligned_cols=184 Identities=10% Similarity=0.025 Sum_probs=100.4
Q ss_pred ceeEeeccccCCCCCChHHHHHHHHHHHHhCCCE----eeecCCCCChHH---HHHHHHhcCCCccccchhhhHHHHhcC
Q 006395 220 LVKVNANIGNSAVASSIEEEVYKVQWATMWGADT----VMDLSTGRHIHE---TREWILRNSAVPVGTVPIYQALEKVDG 292 (647)
Q Consensus 220 ~tKVNANIGtS~~~~~ie~EveKl~~A~~~GADt----vMDLSTGgdi~~---~R~~Il~~spvPvGTVPIYqA~~k~~g 292 (647)
+++|..+| -|++...+++|++++. ++|+|. |||=.--.||.= +=++| +. ++|+ ++
T Consensus 12 ~~~I~pSi-l~ad~~~l~~el~~l~---~~g~d~lHiDVMDG~FVPNitfGp~~i~~i-~~------~~~~-Dv------ 73 (228)
T PRK08091 12 QQPISVGI-LASNWLKFNETLTTLS---ENQLRLLHFDIADGQFSPFFTVGAIAIKQF-PT------HCFK-DV------ 73 (228)
T ss_pred CCeEEeeh-hhcCHHHHHHHHHHHH---HCCCCEEEEeccCCCcCCccccCHHHHHHh-CC------CCCE-EE------
Confidence 35566666 5666778888888775 569998 677544444321 12222 11 2231 11
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCC-------cCchhhhHHH
Q 006395 293 IAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHK-------ENFAYEHWDE 365 (647)
Q Consensus 293 ~~~dlt~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~-------ENplY~~FD~ 365 (647)
-=|. +.-.+.|++-++.|+|++|||.--+.. +. -+..|+..++. =||- |-++.
T Consensus 74 --HLMv-~~P~~~i~~~~~aGad~It~H~Ea~~~-~~---------------~~l~~Ik~~g~~~kaGlalnP~-Tp~~~ 133 (228)
T PRK08091 74 --HLMV-RDQFEVAKACVAAGADIVTLQVEQTHD-LA---------------LTIEWLAKQKTTVLIGLCLCPE-TPISL 133 (228)
T ss_pred --Eecc-CCHHHHHHHHHHhCCCEEEEcccCccc-HH---------------HHHHHHHHCCCCceEEEEECCC-CCHHH
Confidence 1111 112345566688899999999975421 11 12345555554 3774 78899
Q ss_pred HHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCC
Q 006395 366 ILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAP 445 (647)
Q Consensus 366 ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~nv~lqk~lc~~AP 445 (647)
|.+++..-|..|=+. .-||.-.=.-.... |..+.+|-+.-.++|..+-||==|.|-. +|+..-.+ .||=
T Consensus 134 i~~~l~~vD~VLiMt--V~PGfgGQ~f~~~~---l~KI~~lr~~~~~~~~~~~IeVDGGI~~----~ti~~l~~--aGaD 202 (228)
T PRK08091 134 LEPYLDQIDLIQILT--LDPRTGTKAPSDLI---LDRVIQVENRLGNRRVEKLISIDGSMTL----ELASYLKQ--HQID 202 (228)
T ss_pred HHHHHhhcCEEEEEE--ECCCCCCccccHHH---HHHHHHHHHHHHhcCCCceEEEECCCCH----HHHHHHHH--CCCC
Confidence 999999999776552 34554332222222 2333344444445665544444455543 45543333 4577
Q ss_pred ccccCcc
Q 006395 446 FYTLGPL 452 (647)
Q Consensus 446 fYvLGPL 452 (647)
.+|+|--
T Consensus 203 ~~V~GSa 209 (228)
T PRK08091 203 WVVSGSA 209 (228)
T ss_pred EEEEChh
Confidence 7777743
No 188
>cd08616 PI-PLCXD1c Catalytic domain of phosphatidylinositol-specific phospholipase C, X domain containing 1. This subfamily corresponds to the catalytic domain present in a group of phosphatidylinositol-specific phospholipase C X domain containing 1 (PI-PLCXD1), 2 (PI-PLCXD2) and 3 (PI-PLCXD3), which are bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) sequence homologs found in vertebrates. The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, members in this group contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to
Probab=36.07 E-value=1.6e+02 Score=31.05 Aligned_cols=93 Identities=25% Similarity=0.308 Sum_probs=59.4
Q ss_pred HHHHHHhcCCCEEEEeccccc--cccccccCcccCccccccHH------HHHHHHHcCCc-------Cch---hhhHHHH
Q 006395 305 TLIEQAEQGVDYFTIHAGVLL--RYIPLTAKRMTGIVSRGGSI------HAKWCLAYHKE-------NFA---YEHWDEI 366 (647)
Q Consensus 305 ~i~eQaeqGVDf~TIHaGv~~--~~~~~~~~R~tgIVSRGGSi------~a~Wml~~~~E-------Npl---Y~~FD~i 366 (647)
.|.+|.+.||-||-+-.+... ..+-... |+. |+.+ +..|+..|.+| ++. -++++++
T Consensus 63 ~i~~QL~~GiRyfDlRv~~~~~~~~~~~~H----g~~--~~~~~~~L~~i~~fl~~~p~Evvil~~~~~~~~~~~~~~~l 136 (290)
T cd08616 63 TITEQLEAGIRYFDLRIATKPKDNDLYFVH----GLY--GILVKEILEEINDFLTEHPKEVVILDFNHFYGMTEEDHEKL 136 (290)
T ss_pred cHHHHHhcCceEEEEEecccCCCCcEEEEE----ecc--chhHHHHHHHHHHHHHHCCCcEEEEEEEccCCCCHHHHHHH
Confidence 578999999999999887654 2222222 222 2233 45699888766 222 2567888
Q ss_pred HHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEee
Q 006395 367 LDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNE 420 (647)
Q Consensus 367 leI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIE 420 (647)
.+.+++. +||-|.|.+. |.. -.+|++|. +.|=||+|=
T Consensus 137 ~~~l~~~-----fg~~l~~~~~-~~~-------~~tL~~l~----~~~krVIi~ 173 (290)
T cd08616 137 LKMIKSI-----FGKKLCPRDP-DLL-------NVTLEYLW----EKGYQVIVF 173 (290)
T ss_pred HHHHHHH-----hcccccCCCC-CcC-------cCcHHHHH----hCCCEEEEE
Confidence 8888773 7999888654 211 24666664 477788874
No 189
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=36.02 E-value=1.6e+02 Score=29.02 Aligned_cols=62 Identities=18% Similarity=0.169 Sum_probs=38.8
Q ss_pred HHHHHHHHhCCCEee-ecC-----CCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCC
Q 006395 241 YKVQWATMWGADTVM-DLS-----TGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGV 314 (647)
Q Consensus 241 eKl~~A~~~GADtvM-DLS-----TGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGV 314 (647)
+.++.|.++|||.|. |+. ++..+.++.+.+-++..+|+.. + -.|.+++ ++-.+.|+
T Consensus 79 ~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~-~-------------v~t~ee~----~~a~~~G~ 140 (221)
T PRK01130 79 KEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMA-D-------------CSTLEEG----LAAQKLGF 140 (221)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEE-e-------------CCCHHHH----HHHHHcCC
Confidence 346788999999664 554 3367777777775533444431 1 1245543 45677899
Q ss_pred CEEEEe
Q 006395 315 DYFTIH 320 (647)
Q Consensus 315 Df~TIH 320 (647)
||+.++
T Consensus 141 d~i~~~ 146 (221)
T PRK01130 141 DFIGTT 146 (221)
T ss_pred CEEEcC
Confidence 999763
No 190
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=35.99 E-value=1.1e+02 Score=32.06 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=14.0
Q ss_pred ChHHHHHHHHHHHHhCCCEe
Q 006395 235 SIEEEVYKVQWATMWGADTV 254 (647)
Q Consensus 235 ~ie~EveKl~~A~~~GADtv 254 (647)
+.++=.+-++.+.++|+|.|
T Consensus 73 ~~~~~~~aa~~~~~~G~d~I 92 (319)
T TIGR00737 73 DPDTMAEAAKINEELGADII 92 (319)
T ss_pred CHHHHHHHHHHHHhCCCCEE
Confidence 44444555667888999987
No 191
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=35.78 E-value=71 Score=34.59 Aligned_cols=65 Identities=20% Similarity=0.183 Sum_probs=41.5
Q ss_pred HHHHHHHHH------hCCCEeeecCCC--------CChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHH
Q 006395 240 VYKVQWATM------WGADTVMDLSTG--------RHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDT 305 (647)
Q Consensus 240 veKl~~A~~------~GADtvMDLSTG--------gdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~ 305 (647)
++-+..|++ +|||-|| |=.- .+.+++++++-..- +.+| ++-.||. . .++
T Consensus 213 leea~ea~~~~~~~~agaDiIm-LDnm~~~~~~~~~~~e~l~~av~~~~----~~~~----lEaSGGI-t-------~~n 275 (308)
T PLN02716 213 LEEVKEVLEYLSDTKTSLTRVM-LDNMVVPLENGDVDVSMLKEAVELIN----GRFE----TEASGNV-T-------LDT 275 (308)
T ss_pred HHHHHHHHHhcccccCCCCEEE-eCCCcccccccCCCHHHHHHHHHhhC----CCce----EEEECCC-C-------HHH
Confidence 345666788 9999998 3222 26777887663211 3444 3333433 2 478
Q ss_pred HHHHHhcCCCEEEEec
Q 006395 306 LIEQAEQGVDYFTIHA 321 (647)
Q Consensus 306 i~eQaeqGVDf~TIHa 321 (647)
|.+-|+-||||+.+=+
T Consensus 276 i~~yA~tGVD~Is~Ga 291 (308)
T PLN02716 276 VHKIGQTGVTYISSGA 291 (308)
T ss_pred HHHHHHcCCCEEEeCc
Confidence 8889999999997644
No 192
>PRK06801 hypothetical protein; Provisional
Probab=35.67 E-value=28 Score=36.79 Aligned_cols=80 Identities=26% Similarity=0.225 Sum_probs=40.9
Q ss_pred HHHHHHHHHhCCCEee-ecCCC---CChHHHHHHH--HhcCCCcc----ccchhhhHHHHhc--CccCCCCHHHHHHHHH
Q 006395 240 VYKVQWATMWGADTVM-DLSTG---RHIHETREWI--LRNSAVPV----GTVPIYQALEKVD--GIAENLSWEVFRDTLI 307 (647)
Q Consensus 240 veKl~~A~~~GADtvM-DLSTG---gdi~~~R~~I--l~~spvPv----GTVPIYqA~~k~~--g~~~dlt~e~~~d~i~ 307 (647)
++-+..|++.|.++|| |-|.- .|+..+|+-. .+...|+| |.|.-=+--...+ +....-++|+..+.++
T Consensus 87 ~e~i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~ 166 (286)
T PRK06801 87 FEAVVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVD 166 (286)
T ss_pred HHHHHHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHH
Confidence 4557789999999999 44443 3555555543 23333333 4432000000000 1111223355555443
Q ss_pred HHHhcCCCEEEEecc
Q 006395 308 EQAEQGVDYFTIHAG 322 (647)
Q Consensus 308 eQaeqGVDf~TIHaG 322 (647)
+-||||+.|..|
T Consensus 167 ---~tgvD~LAvaiG 178 (286)
T PRK06801 167 ---RTGIDALAVAIG 178 (286)
T ss_pred ---HHCcCEEEeccC
Confidence 379999999554
No 193
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=35.64 E-value=2.8e+02 Score=30.31 Aligned_cols=65 Identities=12% Similarity=-0.003 Sum_probs=41.0
Q ss_pred cCchh-hhHHHHHHHHhHhceeEeccCCCC------CCCccCCCcHHHH-----HHHHHHHHHHHHHHhcCCeEEee
Q 006395 356 ENFAY-EHWDEILDICNQYDVALSIGDGLR------PGSIYDANDTAQF-----AELLTQGELTRRAWDKDVQVMNE 420 (647)
Q Consensus 356 ENplY-~~FD~ileI~k~YDVtlSLGDGLR------PG~i~DA~D~AQ~-----~EL~~LGEL~krA~e~gVQVMIE 420 (647)
|=|+- ..++.+-++.+..++-|.+|..+. +=.-.++-|-.|+ .-+...-+++..|..+|++||+=
T Consensus 238 EeP~~~~d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h 314 (404)
T PRK15072 238 EDPTPAENQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGITHLRRIADFAALYQVRTGSH 314 (404)
T ss_pred ECCCCccCHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHHHHHHHHHHHHHcCCceeec
Confidence 44553 467888889999999999998762 0011223333332 22333336777899999999973
No 194
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=35.26 E-value=3.4e+02 Score=28.48 Aligned_cols=113 Identities=20% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcC--ccCCCCHHHHHHHHHHHHhcCCCEEEEe
Q 006395 243 VQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDG--IAENLSWEVFRDTLIEQAEQGVDYFTIH 320 (647)
Q Consensus 243 l~~A~~~GADtvMDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g--~~~dlt~e~~~d~i~eQaeqGVDf~TIH 320 (647)
++.|.++|||.+.=|-.. ++..|...+ ....++++ -++=+...++-+...+--+-|||++-+|
T Consensus 73 ~~ma~~aGAd~~tV~g~A-~~~TI~~~i--------------~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H 137 (217)
T COG0269 73 ARMAFEAGADWVTVLGAA-DDATIKKAI--------------KVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVILH 137 (217)
T ss_pred HHHHHHcCCCEEEEEecC-CHHHHHHHH--------------HHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEEE
Q ss_pred ccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhc--eeEeccCCCCC-------------
Q 006395 321 AGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYD--VALSIGDGLRP------------- 385 (647)
Q Consensus 321 aGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YD--VtlSLGDGLRP------------- 385 (647)
-|+-.+..-..-+ +|+|-+|-+--+ +.+|..=|++|
T Consensus 138 ~g~D~q~~G~~~~-----------------------------~~~l~~ik~~~~~g~~vAVaGGI~~~~i~~~~~~~~~i 188 (217)
T COG0269 138 RGRDAQAAGKSWG-----------------------------EDDLEKIKKLSDLGAKVAVAGGITPEDIPLFKGIGADI 188 (217)
T ss_pred ecccHhhcCCCcc-----------------------------HHHHHHHHHhhccCceEEEecCCCHHHHHHHhcCCCCE
Q ss_pred ----CCccCCCcHHHHHH
Q 006395 386 ----GSIYDANDTAQFAE 399 (647)
Q Consensus 386 ----G~i~DA~D~AQ~~E 399 (647)
|+|.+|.|.++.++
T Consensus 189 vIvGraIt~a~dp~~~a~ 206 (217)
T COG0269 189 VIVGRAITGAKDPAEAAR 206 (217)
T ss_pred EEECchhcCCCCHHHHHH
No 195
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=35.22 E-value=4.8e+02 Score=27.67 Aligned_cols=161 Identities=22% Similarity=0.173 Sum_probs=83.6
Q ss_pred CChHHHHHHHHHHH-HhCCCEeeecCCCCChHHHHHHHHhcCCCcccc--chhhhHHHHhcCccCCCCHHHHHHHHHHHH
Q 006395 234 SSIEEEVYKVQWAT-MWGADTVMDLSTGRHIHETREWILRNSAVPVGT--VPIYQALEKVDGIAENLSWEVFRDTLIEQA 310 (647)
Q Consensus 234 ~~ie~EveKl~~A~-~~GADtvMDLSTGgdi~~~R~~Il~~spvPvGT--VPIYqA~~k~~g~~~dlt~e~~~d~i~eQa 310 (647)
.+.-.-++|+..|+ +.|+-.++-|.-+|--.. -.....|++. ||...........+..||.+++.+.++.-+
T Consensus 78 d~~i~~~~~l~~~vh~~G~~~~~Ql~h~G~~~~-----~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~eI~~~i~~~~ 152 (338)
T cd04733 78 GEDLEAFREWAAAAKANGALIWAQLNHPGRQSP-----AGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEEIEDVIDRFA 152 (338)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEccCCCcCCC-----ccCCCCCcCCCCCcCcccccccCCCCCcCCHHHHHHHHHHHH
Confidence 34556677776555 568888999988763210 0001123332 333211111123467899998888776543
Q ss_pred -------hcCCCEEEEeccc---cccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHh-Hhcee--E
Q 006395 311 -------EQGVDYFTIHAGV---LLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICN-QYDVA--L 377 (647)
Q Consensus 311 -------eqGVDf~TIHaGv---~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k-~YDVt--l 377 (647)
+.|.|.+-||+|- .-+.+.-..++-++ .-|||+.-.+- |..+-.+.|-+-+- ...|. +
T Consensus 153 ~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D--~yGGslenR~r-------f~~EiI~aIR~avG~d~~v~vri 223 (338)
T cd04733 153 HAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTD--EYGGSLENRAR-------LLLEIYDAIRAAVGPGFPVGIKL 223 (338)
T ss_pred HHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCc--cCCCCHHHHHH-------HHHHHHHHHHHHcCCCCeEEEEE
Confidence 4799999999983 33333333333333 25899743321 33444444444442 12233 3
Q ss_pred eccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEee
Q 006395 378 SIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNE 420 (647)
Q Consensus 378 SLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIE 420 (647)
|.-|.++.|- | ..| .-+++++.-+.||.. ||
T Consensus 224 s~~~~~~~g~-----~---~ee---a~~ia~~Le~~Gvd~-ie 254 (338)
T cd04733 224 NSADFQRGGF-----T---EED---ALEVVEALEEAGVDL-VE 254 (338)
T ss_pred cHHHcCCCCC-----C---HHH---HHHHHHHHHHcCCCE-EE
Confidence 4344444431 2 123 235556666778844 44
No 196
>PF12244 DUF3606: Protein of unknown function (DUF3606); InterPro: IPR022037 This family of proteins is found in bacteria. Proteins in this family are typically between 58 and 85 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=35.10 E-value=38 Score=27.94 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=21.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhc
Q 006395 174 EEMLYCATREKLDPEFVRAEVAR 196 (647)
Q Consensus 174 ~EMe~VA~~E~i~pE~vR~~VA~ 196 (647)
-|++|.|++-|+|++.|++.|++
T Consensus 21 ~ev~ywa~~~gvt~~~L~~AV~~ 43 (57)
T PF12244_consen 21 YEVRYWAKRFGVTEEQLREAVRA 43 (57)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHH
Confidence 48999999999999999999975
No 197
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=34.94 E-value=79 Score=33.94 Aligned_cols=63 Identities=21% Similarity=0.238 Sum_probs=40.6
Q ss_pred HHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEEe
Q 006395 241 YKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIH 320 (647)
Q Consensus 241 eKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGVDf~TIH 320 (647)
|-+..|+++|||-|| | ..-+..++++.+-..- +.+. ++-.||. . .++|++-|+-||||+.+=
T Consensus 208 eea~~a~~agaDiIm-L-Dnmspe~l~~av~~~~----~~~~----leaSGGI-~-------~~ni~~yA~tGVD~Is~g 269 (290)
T PRK06559 208 AAAEEAAAAGADIIM-L-DNMSLEQIEQAITLIA----GRSR----IECSGNI-D-------MTTISRFRGLAIDYVSSG 269 (290)
T ss_pred HHHHHHHHcCCCEEE-E-CCCCHHHHHHHHHHhc----CceE----EEEECCC-C-------HHHHHHHHhcCCCEEEeC
Confidence 455678899999998 3 4447777777764211 2221 2222332 2 478888899999999765
Q ss_pred c
Q 006395 321 A 321 (647)
Q Consensus 321 a 321 (647)
+
T Consensus 270 a 270 (290)
T PRK06559 270 S 270 (290)
T ss_pred c
Confidence 5
No 198
>PLN02537 diaminopimelate decarboxylase
Probab=34.79 E-value=6.2e+02 Score=27.40 Aligned_cols=96 Identities=16% Similarity=0.200 Sum_probs=49.1
Q ss_pred CCCHHHHHHHHHHHHhc--CCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhH-
Q 006395 296 NLSWEVFRDTLIEQAEQ--GVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQ- 372 (647)
Q Consensus 296 dlt~e~~~d~i~eQaeq--GVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~- 372 (647)
-++++++.+.+..-.+. |+++..||+=+--... ....+.+-++.+++++.+
T Consensus 162 Gi~~~~~~~~~~~~~~~~~~l~l~Glh~H~gs~~~--------------------------~~~~~~~~~~~~~~~~~~~ 215 (410)
T PLN02537 162 GIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTIT--------------------------KVDIFRDAAVLMVNYVDEI 215 (410)
T ss_pred CCCHHHHHHHHHHHHhCCCCCcEEEEEeccCCCCC--------------------------chHHHHHHHHHHHHHHHHH
Confidence 34666666655543333 7888888875432211 112234444444444433
Q ss_pred --hce---eEeccCCCCCCCccCC----CcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCC
Q 006395 373 --YDV---ALSIGDGLRPGSIYDA----NDTAQFAELLTQGELTRRAWDKDVQVMNEGPGH 424 (647)
Q Consensus 373 --YDV---tlSLGDGLRPG~i~DA----~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGH 424 (647)
..+ .|++|-|| |..-.+. .|..++++ .|.+...+.++|+++| ||-
T Consensus 216 ~~~g~~~~~idiGGGf-~v~y~~~~~~~~~~~~~~~-----~i~~~~~~~~~~li~E-PGR 269 (410)
T PLN02537 216 RAQGFELSYLNIGGGL-GIDYYHAGAVLPTPRDLID-----TVRELVLSRDLTLIIE-PGR 269 (410)
T ss_pred HHcCCCccEEEcCCCc-cccCCCCCCCCCCHHHHHH-----HHHHHHHhcCCEEEEc-cCh
Confidence 333 48999999 3332211 23333332 1222333568899988 664
No 199
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=34.65 E-value=42 Score=35.80 Aligned_cols=70 Identities=20% Similarity=0.305 Sum_probs=51.3
Q ss_pred HHHHHHHHHhcCCCEEEEeccc----cccccccccCcccCccccccHHHHHHHHHcCCcCch--hhhHHHHHHHHhHhce
Q 006395 302 FRDTLIEQAEQGVDYFTIHAGV----LLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFA--YEHWDEILDICNQYDV 375 (647)
Q Consensus 302 ~~d~i~eQaeqGVDf~TIHaGv----~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENpl--Y~~FD~ileI~k~YDV 375 (647)
++-+++.-.+.|+..+.+|-|. +-++++++..-+.++.++||++| ...+-+|+ -+.++++++.+++|++
T Consensus 18 i~~vv~~a~~~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~L-----gtsR~~~~~~~~~~~~~~~~l~~~~I 92 (301)
T TIGR02482 18 IRAVVRTAIYHGFEVYGIRRGYKGLINGEIKPLESKNVSGIIHRGGTIL-----GTARCPEFKTEEGRQKAVENLKKLGI 92 (301)
T ss_pred HHHHHHHHHHCCCEEEEEecCHHHhcCCCeEeCCHHHHhhHHhCCCcee-----ccCCCCccCCHHHHHHHHHHHHHcCC
Confidence 3445555556789999999886 35566677778889999999976 33444454 3679999999999986
Q ss_pred e
Q 006395 376 A 376 (647)
Q Consensus 376 t 376 (647)
.
T Consensus 93 d 93 (301)
T TIGR02482 93 E 93 (301)
T ss_pred C
Confidence 4
No 200
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=34.58 E-value=69 Score=34.14 Aligned_cols=63 Identities=24% Similarity=0.295 Sum_probs=40.7
Q ss_pred HHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEEe
Q 006395 241 YKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIH 320 (647)
Q Consensus 241 eKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGVDf~TIH 320 (647)
+-+..|+++|||.|| | ..-++.++++++-... +.+ .++-.||. | .+.|++-|+-||||+.+=
T Consensus 204 ee~~ea~~~gaDiIm-L-Dn~s~e~l~~av~~~~----~~~----~leaSGgI----~----~~ni~~yA~tGVD~Is~g 265 (281)
T PRK06543 204 DQIEPVLAAGVDTIM-L-DNFSLDDLREGVELVD----GRA----IVEASGNV----N----LNTVGAIASTGVDVISVG 265 (281)
T ss_pred HHHHHHHhcCCCEEE-E-CCCCHHHHHHHHHHhC----CCe----EEEEECCC----C----HHHHHHHHhcCCCEEEeC
Confidence 456667889999998 3 4447777777764321 122 12323332 2 378888899999999764
Q ss_pred c
Q 006395 321 A 321 (647)
Q Consensus 321 a 321 (647)
+
T Consensus 266 a 266 (281)
T PRK06543 266 A 266 (281)
T ss_pred c
Confidence 4
No 201
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=34.25 E-value=58 Score=33.75 Aligned_cols=88 Identities=24% Similarity=0.277 Sum_probs=55.4
Q ss_pred HHHHHHhCCCEeeecCCCC--ChHHHH-----HHHHh----cC--CCcccc-chhhhHH----HHh---c-------Ccc
Q 006395 243 VQWATMWGADTVMDLSTGR--HIHETR-----EWILR----NS--AVPVGT-VPIYQAL----EKV---D-------GIA 294 (647)
Q Consensus 243 l~~A~~~GADtvMDLSTGg--di~~~R-----~~Il~----~s--pvPvGT-VPIYqA~----~k~---~-------g~~ 294 (647)
+....+.|+|.||=|+||. ++..-+ ..||. .. .-.+|- ||.=+-. .|- . -++
T Consensus 80 i~~le~~G~d~illlCTG~F~~l~~~~~lleP~ril~~lV~al~~~~~vGVivP~~eQ~~~~~~kW~~l~~~~~~a~asP 159 (221)
T PF07302_consen 80 IAQLEAQGYDVILLLCTGEFPGLTARNPLLEPDRILPPLVAALVGGHQVGVIVPLPEQIAQQAEKWQPLGNPVVVAAASP 159 (221)
T ss_pred HHHHHHCCCCEEEEeccCCCCCCCCCcceeehHHhHHHHHHHhcCCCeEEEEecCHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 4456678999999999996 444322 11111 11 123332 3443322 121 1 133
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEec-ccccccccc
Q 006395 295 ENLSWEVFRDTLIEQAEQGVDYFTIHA-GVLLRYIPL 330 (647)
Q Consensus 295 ~dlt~e~~~d~i~eQaeqGVDf~TIHa-Gv~~~~~~~ 330 (647)
-.-+++.|.+.-++-.+||.|++-+|| |.+.++-..
T Consensus 160 y~~~~~~l~~Aa~~L~~~gadlIvLDCmGYt~~~r~~ 196 (221)
T PF07302_consen 160 YEGDEEELAAAARELAEQGADLIVLDCMGYTQEMRDI 196 (221)
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHH
Confidence 336899999999999999999999999 887766553
No 202
>PRK08227 autoinducer 2 aldolase; Validated
Probab=34.08 E-value=92 Score=32.90 Aligned_cols=100 Identities=15% Similarity=0.156 Sum_probs=70.3
Q ss_pred HHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEEecc
Q 006395 243 VQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAG 322 (647)
Q Consensus 243 l~~A~~~GADtvMDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGVDf~TIHaG 322 (647)
++.|.+.|||-|==-.|| +.=+++++.+|+||= = .||. .. +.++||+.++++.+.|..=+++=--
T Consensus 164 aRiaaELGADiVK~~y~~----~~f~~vv~a~~vPVv-----i----aGG~-k~-~~~~~L~~v~~ai~aGa~Gv~~GRN 228 (264)
T PRK08227 164 TRIAAEMGAQIIKTYYVE----EGFERITAGCPVPIV-----I----AGGK-KL-PERDALEMCYQAIDEGASGVDMGRN 228 (264)
T ss_pred HHHHHHHcCCEEecCCCH----HHHHHHHHcCCCcEE-----E----eCCC-CC-CHHHHHHHHHHHHHcCCceeeechh
Confidence 678899999998777776 444567778887652 1 2554 33 8899999999999999876665433
Q ss_pred ccccccc-cccCcccCccccccHHHHHHHHHcCCcC
Q 006395 323 VLLRYIP-LTAKRMTGIVSRGGSIHAKWCLAYHKEN 357 (647)
Q Consensus 323 v~~~~~~-~~~~R~tgIVSRGGSi~a~Wml~~~~EN 357 (647)
|-..-=| ...+++..||=.+-|.=.+|=+.|..+|
T Consensus 229 IfQ~~~p~~~~~al~~IVh~~~s~~eA~~~~~~~~~ 264 (264)
T PRK08227 229 IFQSEHPVAMIKAVHAVVHENETAKEAYELYLSEKN 264 (264)
T ss_pred hhccCCHHHHHHHHHHHHhCCCCHHHHHHHHHHhcC
Confidence 3332212 2347888888888888888777776555
No 203
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=34.05 E-value=3.7e+02 Score=27.35 Aligned_cols=59 Identities=19% Similarity=0.197 Sum_probs=40.5
Q ss_pred Cchhhh-HHHHHHHHhHhcee-EeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEe-eCCCCCCCCchHH
Q 006395 357 NFAYEH-WDEILDICNQYDVA-LSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMN-EGPGHIPMHKIPE 432 (647)
Q Consensus 357 NplY~~-FD~ileI~k~YDVt-lSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMI-EGPGHVPl~~I~~ 432 (647)
||+|++ +++.++-|++.++. +.+- |.. ++ .+.++.+.++++|+...+ =.| +.|.+.|+.
T Consensus 86 n~~~~~G~~~fi~~~~~aG~~giiip---------Dl~----~e---e~~~~~~~~~~~g~~~i~~i~P-~T~~~~i~~ 147 (242)
T cd04724 86 NPILQYGLERFLRDAKEAGVDGLIIP---------DLP----PE---EAEEFREAAKEYGLDLIFLVAP-TTPDERIKK 147 (242)
T ss_pred CHHHHhCHHHHHHHHHHCCCcEEEEC---------CCC----HH---HHHHHHHHHHHcCCcEEEEeCC-CCCHHHHHH
Confidence 888887 89999999998874 4443 332 22 567889999999997654 333 445554443
No 204
>PRK13317 pantothenate kinase; Provisional
Probab=34.03 E-value=2.1e+02 Score=30.16 Aligned_cols=129 Identities=16% Similarity=0.232 Sum_probs=64.6
Q ss_pred ccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhc---eeEeccCCCCC--CCccCCCcHHHHHHHH----
Q 006395 331 TAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYD---VALSIGDGLRP--GSIYDANDTAQFAELL---- 401 (647)
Q Consensus 331 ~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YD---VtlSLGDGLRP--G~i~DA~D~AQ~~EL~---- 401 (647)
...|+.|.===|| .+.+-+..= +| -..||+|++++++.| +-|.++|=-.- .-+.-++=.+-|+|+.
T Consensus 116 ~~~r~~Gt~iGGg-t~~gL~~lL--~~--~~~~~el~~la~~g~~~~~Dl~v~dIy~~~~~~l~i~s~csvFakv~~l~~ 190 (277)
T PRK13317 116 SQRRVGGTGIGGG-TIQGLSKLL--TN--ISDYEQLIELAKHGDRNNIDLKVGDIYKGPLPPIPGDLTASNFGKVLHHLD 190 (277)
T ss_pred ceEEEccccccHH-HHHHHHHHH--hC--CCCHHHHHHHHhcCCCccccceeccccCCCCCCCCCceeEehhhhhhhhhc
Confidence 4578888744444 444433221 11 167999999999986 44555542210 0011122233444432
Q ss_pred ------------------HHHHHHHH-HHhcCCeEEeeCCCCCCCCc-hHHHHHHHHHhcCCCCccccCccccccCCCch
Q 006395 402 ------------------TQGELTRR-AWDKDVQVMNEGPGHIPMHK-IPENMQKQLEWCNEAPFYTLGPLTTDIAPGYD 461 (647)
Q Consensus 402 ------------------~LGEL~kr-A~e~gVQVMIEGPGHVPl~~-I~~nv~lqk~lc~~APfYvLGPLvTDIApGYD 461 (647)
+++.|+.. |+..+++-++=.-|.+.-|. +..-+....++.+ ..++ -|-+.
T Consensus 191 ~g~~~eDIaasl~~~v~~~I~~lA~~~ar~~~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~-~~~~---------~p~~~ 260 (277)
T PRK13317 191 SEFTSSDILAGVIGLVGEVITTLSIQAAREKNIENIVYIGSTLTNNPLLQEIIESYTKLRN-CTPI---------FLENG 260 (277)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECcccccCHHHHHHHHHHHhcCC-ceEE---------ecCCC
Confidence 24444433 44455554433323444333 2322333333322 2222 26678
Q ss_pred hHHHhHHHHHhhh
Q 006395 462 HITSAIGAANIGA 474 (647)
Q Consensus 462 HItsAIGaA~aa~ 474 (647)
+..+|||||+.++
T Consensus 261 ~~~gAlGAaL~a~ 273 (277)
T PRK13317 261 GYSGAIGALLLAT 273 (277)
T ss_pred chhHHHHHHHHhh
Confidence 8999999998865
No 205
>PRK06886 hypothetical protein; Validated
Probab=33.51 E-value=3.8e+02 Score=28.92 Aligned_cols=94 Identities=20% Similarity=0.236 Sum_probs=56.9
Q ss_pred hhhHHHHhcCccCCCCHHHHHH----HHHHHHhcCCCEEEEecccc----ccccc-------cccCcc---------cCc
Q 006395 283 IYQALEKVDGIAENLSWEVFRD----TLIEQAEQGVDYFTIHAGVL----LRYIP-------LTAKRM---------TGI 338 (647)
Q Consensus 283 IYqA~~k~~g~~~dlt~e~~~d----~i~eQaeqGVDf~TIHaGv~----~~~~~-------~~~~R~---------tgI 338 (647)
++++++.....-..+|.+++.+ .|+.+..+|+-+|--|.-|. +..++ ...+|+ -|+
T Consensus 48 l~e~i~~~~~~k~~~t~~dv~~Ra~~~l~~~~~~Gtt~iRtHvdvd~~~~l~~~~a~~~~r~~~~~~idlq~vafPq~g~ 127 (329)
T PRK06886 48 LQQKWDLVDEVKRNSTVEDYYARFSQAIELMISQGVTAFGTFVDIDPICEDRAIIAAHKAREVYKHDIILKFANQTLKGV 127 (329)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcCcccEeeeeccCCCccccHHHHHHHHHHHhcCcceEEEEecChhhc
Confidence 6677654433335667777665 78889999999999999662 22222 111332 466
Q ss_pred cccccHHHHHHHHHc-----------CC-cCc---hhhhHHHHHHHHhHhceeEec
Q 006395 339 VSRGGSIHAKWCLAY-----------HK-ENF---AYEHWDEILDICNQYDVALSI 379 (647)
Q Consensus 339 VSRGGSi~a~Wml~~-----------~~-ENp---lY~~FD~ileI~k~YDVtlSL 379 (647)
.+.+| .+||..- +. |.. -=++++.+++++++||+-+.+
T Consensus 128 ~~~~~---~~l~~~al~~advvGGiP~~~~~~~~~~~e~l~~~~~lA~~~g~~Id~ 180 (329)
T PRK06886 128 IEPTA---KKWFDIGSEMVDMIGGLPYRDELDYGRGLEAMDILLDTAKSLGKMVHV 180 (329)
T ss_pred cCccH---HHHHHHHHHhCCEEeCccCCcCCCCCCCHHHHHHHHHHHHHcCCCeEE
Confidence 66666 3666442 11 111 125688888888888865554
No 206
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=32.93 E-value=2.2e+02 Score=30.56 Aligned_cols=77 Identities=16% Similarity=0.146 Sum_probs=50.4
Q ss_pred ChHHHHHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCC
Q 006395 235 SIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGV 314 (647)
Q Consensus 235 ~ie~EveKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGV 314 (647)
.+++=++.++...++|||.|+=-+ -.+++++|+.. +..++|+=..++ . ++..-.++.++| .+-||
T Consensus 164 g~deAI~Ra~aY~eAGAD~ifi~~-~~~~~~i~~~~-~~~~~Pl~~n~~-----~-~~~~p~~s~~~L-------~~lGv 228 (292)
T PRK11320 164 GLDAAIERAQAYVEAGADMIFPEA-MTELEMYRRFA-DAVKVPILANIT-----E-FGATPLFTTEEL-------ASAGV 228 (292)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecC-CCCHHHHHHHH-HhcCCCEEEEec-----c-CCCCCCCCHHHH-------HHcCC
Confidence 589999999999999999999654 34677777543 444555422221 1 233334554443 67899
Q ss_pred CEEEEecccccc
Q 006395 315 DYFTIHAGVLLR 326 (647)
Q Consensus 315 Df~TIHaGv~~~ 326 (647)
.++++-....+.
T Consensus 229 ~~v~~~~~~~~a 240 (292)
T PRK11320 229 AMVLYPLSAFRA 240 (292)
T ss_pred cEEEEChHHHHH
Confidence 999887654433
No 207
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=32.93 E-value=1.5e+02 Score=29.41 Aligned_cols=42 Identities=14% Similarity=0.151 Sum_probs=30.5
Q ss_pred CCCCCCccCCCcHHHHHHHHHH------------------HHHHHHHHhcCCeEEeeCCC
Q 006395 382 GLRPGSIYDANDTAQFAELLTQ------------------GELTRRAWDKDVQVMNEGPG 423 (647)
Q Consensus 382 GLRPG~i~DA~D~AQ~~EL~~L------------------GEL~krA~e~gVQVMIEGPG 423 (647)
|++|=...-+.|-+=.-..+.+ -.|+++++++|++|++=|..
T Consensus 79 Gf~pv~~kG~~Dv~laIDame~~~~~~iD~~vLvSgD~DF~~Lv~~lre~G~~V~v~g~~ 138 (160)
T TIGR00288 79 GFEPIIVAGDVDVRMAVEAMELIYNPNIDAVALVTRDADFLPVINKAKENGKETIVIGAE 138 (160)
T ss_pred CceEEEecCcccHHHHHHHHHHhccCCCCEEEEEeccHhHHHHHHHHHHCCCEEEEEeCC
Confidence 5555444447787666666655 37999999999999999953
No 208
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=32.93 E-value=4.3e+02 Score=29.00 Aligned_cols=68 Identities=25% Similarity=0.271 Sum_probs=36.9
Q ss_pred HHHHHHHhCCCEeeecCCCC--ChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 006395 242 KVQWATMWGADTVMDLSTGR--HIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTI 319 (647)
Q Consensus 242 Kl~~A~~~GADtvMDLSTGg--di~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGVDf~TI 319 (647)
-++.|.++|||-|.=..... ++.++++.+-+. .++++- | -+|.+.-.+.+++-.+.|+||+++
T Consensus 73 ~v~~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~-G~~~~~-----------g---~~s~~t~~e~~~~a~~~GaD~I~~ 137 (430)
T PRK07028 73 EVEMAAKAGADIVCILGLADDSTIEDAVRAARKY-GVRLMA-----------D---LINVPDPVKRAVELEELGVDYINV 137 (430)
T ss_pred HHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHc-CCEEEE-----------E---ecCCCCHHHHHHHHHhcCCCEEEE
Confidence 55679999999877332222 244455544432 222221 0 023222223344445679999999
Q ss_pred ecccc
Q 006395 320 HAGVL 324 (647)
Q Consensus 320 HaGv~ 324 (647)
|.|.+
T Consensus 138 ~pg~~ 142 (430)
T PRK07028 138 HVGID 142 (430)
T ss_pred Eeccc
Confidence 98875
No 209
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=32.86 E-value=36 Score=33.36 Aligned_cols=63 Identities=24% Similarity=0.237 Sum_probs=33.3
Q ss_pred HHHHHHHHhCCCEee-ecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 006395 241 YKVQWATMWGADTVM-DLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTI 319 (647)
Q Consensus 241 eKl~~A~~~GADtvM-DLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGVDf~TI 319 (647)
+.+..|+++|+|.|| |=.+-.++.++.+.+-...+= | .-.+-|.+. .+.|.+-++.|||++.+
T Consensus 91 ee~~ea~~~g~d~I~lD~~~~~~~~~~v~~l~~~~~~----v-----~ie~SGGI~-------~~ni~~ya~~gvD~isv 154 (169)
T PF01729_consen 91 EEAEEALEAGADIIMLDNMSPEDLKEAVEELRELNPR----V-----KIEASGGIT-------LENIAEYAKTGVDVISV 154 (169)
T ss_dssp HHHHHHHHTT-SEEEEES-CHHHHHHHHHHHHHHTTT----S-----EEEEESSSS-------TTTHHHHHHTT-SEEEE
T ss_pred HHHHHHHHhCCCEEEecCcCHHHHHHHHHHHhhcCCc----E-----EEEEECCCC-------HHHHHHHHhcCCCEEEc
Confidence 446678999999998 444444444444433222211 0 011223222 25677779999999876
No 210
>PRK00957 methionine synthase; Provisional
Probab=32.59 E-value=81 Score=32.67 Aligned_cols=176 Identities=11% Similarity=0.121 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhH-hc-e--
Q 006395 300 EVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQ-YD-V-- 375 (647)
Q Consensus 300 e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~-YD-V-- 375 (647)
+.+.++|++|.+.|+|++| +--.+++.+.....++-|+- |..+..+ +....++|+.++|.++.+++++ +| +
T Consensus 36 ~ai~~~v~~q~~~Gld~vt-dGe~r~~~~~~f~~~l~G~~--~~~vvg~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~v 110 (305)
T PRK00957 36 PAIEEAVADQVKAGIDIIS-DGQVRGDMVEIFASNMPGFD--GKRVIGR--VEPPAKPITLKDLKYAKKVAKKKDPNKGV 110 (305)
T ss_pred HHHHHHHHHHHHhCCCeec-CCCccCchHHHHHhcCCCcc--CCeEEEe--ecCCCCCCcHHHHHHHHHHHhccCCCCce
Confidence 4567899999999999985 44554455444556777762 2222100 0001257999999999999875 43 1
Q ss_pred e------EeccCCCCCCCccCCC-cHHHHHH-HHHHHHHHHHHHhcCCe-EEeeCCCCC-CCCchHHHHHHHHHhcCCCC
Q 006395 376 A------LSIGDGLRPGSIYDAN-DTAQFAE-LLTQGELTRRAWDKDVQ-VMNEGPGHI-PMHKIPENMQKQLEWCNEAP 445 (647)
Q Consensus 376 t------lSLGDGLRPG~i~DA~-D~AQ~~E-L~~LGEL~krA~e~gVQ-VMIEGPGHV-Pl~~I~~nv~lqk~lc~~AP 445 (647)
. ++|-..++....++.. |+.-+.. +..+.+.++...++|+. |.|.=|.=. -+...+.-.+.-+++..+..
T Consensus 111 K~~i~GP~Tla~~~~~~~~y~~~~~~~~~~dla~~~~~~i~~l~~~G~~~IqiDEP~l~~~~~~~~~~~~~~~~~~~~i~ 190 (305)
T PRK00957 111 KGIITGPSTLAYSLRVEPFYSDNKDEELIYDLARALRKEAEALEKAGVAMIQIDEPILSTGAYDLEVAKKAIDIITKGLN 190 (305)
T ss_pred eEEecCHHHHHhhcccccccCCccHHHHHHHHHHHHHHHHHHHHHcCCCEEEecChhhhcCCchHHHHHHHHHHHHHhhC
Confidence 1 2344444432233433 1222222 34455666667788986 355555111 12223333333344433332
Q ss_pred ccccCccccccCCCchhHHHhHHHHHhhhcccc--eeeecCchhhc
Q 006395 446 FYTLGPLTTDIAPGYDHITSAIGAANIGALGTA--LLCYVTPKEHL 489 (647)
Q Consensus 446 fYvLGPLvTDIApGYDHItsAIGaA~aa~~Gad--~LCYVTPaEHL 489 (647)
.++.+-+--+|+.|...+.. .|+| .|-|+...+.|
T Consensus 191 ----~~v~lH~CG~~~~i~~~l~~-----~~vd~i~ld~~~~~~~l 227 (305)
T PRK00957 191 ----VPVAMHVCGDVSNIIDDLLK-----FNVDILDHEFASNKKNL 227 (305)
T ss_pred ----CceEEEECCCcHHHHHHHHh-----CCCCEEEEeecCCCCCH
Confidence 23444555678777666632 3444 45554444433
No 211
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=32.58 E-value=1.2e+02 Score=29.75 Aligned_cols=79 Identities=15% Similarity=0.106 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhCCCEee----ecCCCCCh---HHHHHHHHhcCCCcccc--chhhhH--HHHhcC--c---cCCCCHH
Q 006395 237 EEEVYKVQWATMWGADTVM----DLSTGRHI---HETREWILRNSAVPVGT--VPIYQA--LEKVDG--I---AENLSWE 300 (647)
Q Consensus 237 e~EveKl~~A~~~GADtvM----DLSTGgdi---~~~R~~Il~~spvPvGT--VPIYqA--~~k~~g--~---~~dlt~e 300 (647)
..=++-++....+|||.|- |-..++++ ..+|+.+ +.||-++. ++-||+ +.+.|- . ..+++.+
T Consensus 31 ~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v--~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~ 108 (217)
T cd00331 31 FDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAV--SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDE 108 (217)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhc--CCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHH
Confidence 3446677888889999874 22444444 5555543 33443343 444443 223221 1 2345555
Q ss_pred HHHHHHHHHHhcCCCEE
Q 006395 301 VFRDTLIEQAEQGVDYF 317 (647)
Q Consensus 301 ~~~d~i~eQaeqGVDf~ 317 (647)
.+.+.+++...-|++.+
T Consensus 109 ~~~~~~~~~~~~g~~~~ 125 (217)
T cd00331 109 QLKELYELARELGMEVL 125 (217)
T ss_pred HHHHHHHHHHHcCCeEE
Confidence 66666666566677654
No 212
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=32.58 E-value=92 Score=30.00 Aligned_cols=65 Identities=22% Similarity=0.185 Sum_probs=37.7
Q ss_pred HHHHHHhCCCEee-ecCCC-CChHHHHHHHHhcCCCccccchhhhHHHHhcCccCC-CCHHHHHHHHHHHHhcCCCEEEE
Q 006395 243 VQWATMWGADTVM-DLSTG-RHIHETREWILRNSAVPVGTVPIYQALEKVDGIAEN-LSWEVFRDTLIEQAEQGVDYFTI 319 (647)
Q Consensus 243 l~~A~~~GADtvM-DLSTG-gdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~d-lt~e~~~d~i~eQaeqGVDf~TI 319 (647)
++.+.++|||.|. ...++ .++.++-+++-+ ..+++|- + ++.....+.+++-.+.|+||+++
T Consensus 69 ~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~-~g~~~~~---------------~~~~~~t~~~~~~~~~~~g~d~v~~ 132 (206)
T TIGR03128 69 AEQAFAAGADIVTVLGVADDATIKGAVKAAKK-HGKEVQV---------------DLINVKDKVKRAKELKELGADYIGV 132 (206)
T ss_pred HHHHHHcCCCEEEEeccCCHHHHHHHHHHHHH-cCCEEEE---------------EecCCCChHHHHHHHHHcCCCEEEE
Confidence 4558899999884 22222 245666666443 3343332 2 23333444454445669999999
Q ss_pred eccc
Q 006395 320 HAGV 323 (647)
Q Consensus 320 HaGv 323 (647)
+.|.
T Consensus 133 ~pg~ 136 (206)
T TIGR03128 133 HTGL 136 (206)
T ss_pred cCCc
Confidence 8765
No 213
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=32.36 E-value=29 Score=36.97 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCeEE--eeCCCCC
Q 006395 402 TQGELTRRAWDKDVQVM--NEGPGHI 425 (647)
Q Consensus 402 ~LGEL~krA~e~gVQVM--IEGPGHV 425 (647)
.+-||++.|.++||+|+ |+-|||+
T Consensus 76 di~elv~yA~~rgI~vIPEiD~PGH~ 101 (329)
T cd06568 76 DYKDIVAYAAERHITVVPEIDMPGHT 101 (329)
T ss_pred HHHHHHHHHHHcCCEEEEecCCcHHH
No 214
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=32.32 E-value=3.2e+02 Score=29.89 Aligned_cols=155 Identities=12% Similarity=0.090 Sum_probs=91.7
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEec--cccccccc--cccCcccCc---------cccccHHHHHHHHHc-----------
Q 006395 298 SWEVFRDTLIEQAEQGVDYFTIHA--GVLLRYIP--LTAKRMTGI---------VSRGGSIHAKWCLAY----------- 353 (647)
Q Consensus 298 t~e~~~d~i~eQaeqGVDf~TIHa--Gv~~~~~~--~~~~R~tgI---------VSRGGSi~a~Wml~~----------- 353 (647)
.-++|...|.+.+..|.|-+-+|. |+... ++ ...+=++++ ++|....+..|-..+
T Consensus 47 ~l~~~K~lv~~~l~~~asaILld~~yG~~a~-~~~~~~~GLil~~e~tg~d~t~~gr~~~~~~~~sve~a~~~GAdAVk~ 125 (340)
T PRK12858 47 DLVDFKLAVSEALTPYASAILLDPEYGLPAA-KVRDPNCGLLLSYEKTGYDATAPGRLPDLLDNWSVRRIKEAGADAVKL 125 (340)
T ss_pred hHHHHHHHHHHHHhhCCCEEEEccccChhhh-cccCCCCCeEEEecccccccCCCCCCccccccccHHHHHHcCCCEEEE
Confidence 457888899999999999999988 76553 22 122333331 122334455564444
Q ss_pred -----CC-----cCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHH--HHHHHHHHHHHh--cCCeE-E
Q 006395 354 -----HK-----ENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAEL--LTQGELTRRAWD--KDVQV-M 418 (647)
Q Consensus 354 -----~~-----ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL--~~LGEL~krA~e--~gVQV-M 418 (647)
.. |+--.+...+|.+-|++||+-|=|-==..|.-..|.++ .-+++. ..+.+.++++-+ .||-| =
T Consensus 126 lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~-~~~a~~~p~~V~~a~r~~~~~elGaDvlK 204 (340)
T PRK12858 126 LLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKA-EEFAKVKPEKVIKTMEEFSKPRYGVDVLK 204 (340)
T ss_pred EEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCcccccc-ccccccCHHHHHHHHHHHhhhccCCeEEE
Confidence 22 12344568888899999998876510012222222222 111111 256777888884 88874 4
Q ss_pred eeCCCCC-------------CCCchHHHHHHHHHhcCCCCccccCccccc
Q 006395 419 NEGPGHI-------------PMHKIPENMQKQLEWCNEAPFYTLGPLTTD 455 (647)
Q Consensus 419 IEGPGHV-------------Pl~~I~~nv~lqk~lc~~APfYvLGPLvTD 455 (647)
+|=||++ .-.+..+.++.|-+.|+ .||.+||==+++
T Consensus 205 ve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~-~P~vvlsgG~~~ 253 (340)
T PRK12858 205 VEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATD-LPFIFLSAGVSP 253 (340)
T ss_pred eeCCCCcccccccccccccccHHHHHHHHHHHHhhCC-CCEEEECCCCCH
Confidence 6767665 33445578888888775 899987644433
No 215
>PRK07328 histidinol-phosphatase; Provisional
Probab=32.12 E-value=1.1e+02 Score=31.32 Aligned_cols=136 Identities=17% Similarity=0.202 Sum_probs=80.8
Q ss_pred eecCCCCChHHHHHHHHhc--CCCccccch------hhh--HHHHh-cCccCCCCHHHHHHHHHHHHhc-CCCEEEEecc
Q 006395 255 MDLSTGRHIHETREWILRN--SAVPVGTVP------IYQ--ALEKV-DGIAENLSWEVFRDTLIEQAEQ-GVDYFTIHAG 322 (647)
Q Consensus 255 MDLSTGgdi~~~R~~Il~~--spvPvGTVP------IYq--A~~k~-~g~~~dlt~e~~~d~i~eQaeq-GVDf~TIHaG 322 (647)
+|..- +.++.+++ +|+. ...-||.|= ++. -.... .+. .+--++.+|+.+.+-++. .+|++ =|.+
T Consensus 87 ~~~~~-~~~~~~~~-~l~~~~~D~vigSvH~~~~~~~~~~~~~~~~~~~~-~~~~~~~Y~~~~~~~~~~~~~dvl-gH~d 162 (269)
T PRK07328 87 ADYHP-GTEEFLER-LLEAYPFDYVIGSVHYLGAWGFDNPDFVAEYEERD-LDELYRRYFALVEQAARSGLFDII-GHPD 162 (269)
T ss_pred ecccC-CcHHHHHH-HHHhCCCCeEEEEEeecCCcCCCChhHHHHHhcCC-HHHHHHHHHHHHHHHHHcCCCCEe-eCcc
Confidence 55543 46666666 4444 345666552 211 11111 122 223346677777776664 56655 3776
Q ss_pred ccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccC-CCCCCCccCCCcHHHHHHHH
Q 006395 323 VLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGD-GLRPGSIYDANDTAQFAELL 401 (647)
Q Consensus 323 v~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlSLGD-GLRPG~i~DA~D~AQ~~EL~ 401 (647)
.-+.+-. + .+-++...+++|++.|+++|+.|=+=- |||-++- |..
T Consensus 163 ~i~~~~~----~--------------------~~~~~~~~~~~il~~~~~~g~~lEiNt~~~r~~~~----------~~y 208 (269)
T PRK07328 163 LIKKFGH----R--------------------PREDLTELYEEALDVIAAAGLALEVNTAGLRKPVG----------EIY 208 (269)
T ss_pred HHHHcCC----C--------------------CchhHHHHHHHHHHHHHHcCCEEEEEchhhcCCCC----------CCC
Confidence 4322211 0 011245778999999999999985533 7887641 234
Q ss_pred HHHHHHHHHHhcCCeEEeeCCCCCCCC
Q 006395 402 TQGELTRRAWDKDVQVMNEGPGHIPMH 428 (647)
Q Consensus 402 ~LGEL~krA~e~gVQVMIEGPGHVPl~ 428 (647)
-..++.++|.+.|+.+.|=.=-|-|-+
T Consensus 209 p~~~il~~~~~~g~~itigSDAH~~~~ 235 (269)
T PRK07328 209 PSPALLRACRERGIPVVLGSDAHRPEE 235 (269)
T ss_pred CCHHHHHHHHHcCCCEEEeCCCCCHHH
Confidence 456889999999999888766788844
No 216
>PRK02227 hypothetical protein; Provisional
Probab=32.12 E-value=1.6e+02 Score=31.10 Aligned_cols=157 Identities=17% Similarity=0.160 Sum_probs=87.1
Q ss_pred HHHHHHHHHhCCCEeeec------CCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcC
Q 006395 240 VYKVQWATMWGADTVMDL------STGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQG 313 (647)
Q Consensus 240 veKl~~A~~~GADtvMDL------STGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqG 313 (647)
++.+..|++.||| |.|+ |=|.+...+=+.|.+..+ |..|+=-++ |+. .+.+......+..-+.-|
T Consensus 10 ~eEA~~Al~~GaD-iIDvK~P~~GaLGA~~p~vir~Iv~~~~---~~~pvSAti----GD~-p~~p~~~~~aa~~~a~~G 80 (238)
T PRK02227 10 LEEALEALAGGAD-IIDVKNPKEGSLGANFPWVIREIVAAVP---GRKPVSATI----GDV-PYKPGTISLAALGAAATG 80 (238)
T ss_pred HHHHHHHHhcCCC-EEEccCCCCCCCCCCCHHHHHHHHHHhC---CCCCceeec----cCC-CCCchHHHHHHHHHHhhC
Confidence 4557789999997 4577 445555555555655544 334443332 332 344566777888889999
Q ss_pred CCEEEEeccccc-----ccccccc--CcccCccccccHHHHHHHHHcCCcCchhhh--------HHHHHHHHhHhceeEe
Q 006395 314 VDYFTIHAGVLL-----RYIPLTA--KRMTGIVSRGGSIHAKWCLAYHKENFAYEH--------WDEILDICNQYDVALS 378 (647)
Q Consensus 314 VDf~TIHaGv~~-----~~~~~~~--~R~tgIVSRGGSi~a~Wml~~~~ENplY~~--------FD~ileI~k~YDVtlS 378 (647)
|||+-| |+-. +.++... -|-.....++-.+++ -+|.. ..+|++++++.....-
T Consensus 81 vDyVKv--Gl~~~~~~~~~~~~~~~v~~a~~~~~~~~~vVa----------v~yaD~~r~~~~~~~~l~~~a~~aGf~g~ 148 (238)
T PRK02227 81 ADYVKV--GLYGGKTAEEAVEVMKAVVRAVKDLDPGKIVVA----------AGYADAHRVGSVSPLSLPAIAADAGFDGA 148 (238)
T ss_pred CCEEEE--cCCCCCcHHHHHHHHHHHHHhhhhcCCCCeEEE----------EEecccccccCCChHHHHHHHHHcCCCEE
Confidence 999755 4321 1111100 000000011111111 12333 2389999998887776
Q ss_pred ccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeC
Q 006395 379 IGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEG 421 (647)
Q Consensus 379 LGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEG 421 (647)
+=|.- +-|..---++.-+..|.+.++.|+++|.++=+=|
T Consensus 149 MlDTa----~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~~gLAG 187 (238)
T PRK02227 149 MLDTA----IKDGKSLFDHMDEEELAEFVAEARSHGLMSALAG 187 (238)
T ss_pred EEecc----cCCCcchHhhCCHHHHHHHHHHHHHcccHhHhcc
Confidence 66653 2233333344444556677899999999887755
No 217
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=31.96 E-value=5.3e+02 Score=26.92 Aligned_cols=150 Identities=15% Similarity=0.156 Sum_probs=76.0
Q ss_pred CChHHHHHHHHHHHHhCCCEeeecCCCCCh----HHHH---HHHHhcCCCccccchhhh------HHHHhcC--ccCCCC
Q 006395 234 SSIEEEVYKVQWATMWGADTVMDLSTGRHI----HETR---EWILRNSAVPVGTVPIYQ------ALEKVDG--IAENLS 298 (647)
Q Consensus 234 ~~ie~EveKl~~A~~~GADtvMDLSTGgdi----~~~R---~~Il~~spvPvGTVPIYq------A~~k~~g--~~~dlt 298 (647)
.|.+.=++++..-++.|||- .|+-.+-.- ..+. +.|.+.+.+|+ .|=-|. |++.+.| -+-+++
T Consensus 22 ~d~~~i~~~A~~~~~~GAdi-IDVg~~~~~~eE~~r~~~~v~~l~~~~~~pl-sIDT~~~~v~eaaL~~~~G~~iINsIs 99 (261)
T PRK07535 22 KDAAFIQKLALKQAEAGADY-LDVNAGTAVEEEPETMEWLVETVQEVVDVPL-CIDSPNPAAIEAGLKVAKGPPLINSVS 99 (261)
T ss_pred CCHHHHHHHHHHHHHCCCCE-EEECCCCCchhHHHHHHHHHHHHHHhCCCCE-EEeCCCHHHHHHHHHhCCCCCEEEeCC
Confidence 34555566677778889884 477654332 1121 22333334443 222222 3333223 223344
Q ss_pred H-----HHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHh
Q 006395 299 W-----EVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQY 373 (647)
Q Consensus 299 ~-----e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~Y 373 (647)
. +.++.++ ++-|+.++.+|.. -+-+|.+... -.+.|.++++.|.++
T Consensus 100 ~~~~~~~~~~~l~---~~~g~~vv~m~~~--~~g~P~t~~~------------------------~~~~l~~~v~~a~~~ 150 (261)
T PRK07535 100 AEGEKLEVVLPLV---KKYNAPVVALTMD--DTGIPKDAED------------------------RLAVAKELVEKADEY 150 (261)
T ss_pred CCCccCHHHHHHH---HHhCCCEEEEecC--CCCCCCCHHH------------------------HHHHHHHHHHHHHHc
Confidence 3 3344433 4569999988852 1123332111 168889999999999
Q ss_pred ce---eEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEe
Q 006395 374 DV---ALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMN 419 (647)
Q Consensus 374 DV---tlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMI 419 (647)
.| -|=|==|+=|- +.+..|..|++..-+..+.-+- |+.+++
T Consensus 151 GI~~~~IilDPgi~~~----~~~~~~~~~~l~~i~~l~~~~p-g~p~l~ 194 (261)
T PRK07535 151 GIPPEDIYIDPLVLPL----SAAQDAGPEVLETIRRIKELYP-KVHTTC 194 (261)
T ss_pred CCCHhHEEEeCCCCcc----cCChHHHHHHHHHHHHHHHhCC-CCCEEE
Confidence 88 45554444431 2334455554433333332111 788776
No 218
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=31.94 E-value=1.1e+02 Score=31.30 Aligned_cols=99 Identities=17% Similarity=0.248 Sum_probs=60.6
Q ss_pred eEeecCCceeEeeccccCCCCCChHHHHHHHHHHHHhCCCEe---eecCCC----CChHHHHHHHHhcCCCccccchhhh
Q 006395 213 MIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTV---MDLSTG----RHIHETREWILRNSAVPVGTVPIYQ 285 (647)
Q Consensus 213 ~~IG~g~~tKVNANIGtS~~~~~ie~EveKl~~A~~~GADtv---MDLSTG----gdi~~~R~~Il~~spvPvGTVPIYq 285 (647)
..+|.+ +.||=+.| ...+.++=+++++.+...|||.| +|+-.. .++.++...+.+.. +.+||-=
T Consensus 9 ~~~~~~-~~~i~v~l----~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~~~~~~~~l~~~~----~~~PiI~ 79 (253)
T PRK02412 9 LVIGEG-APKIIVPI----MGKTLEEVLAEALAISKYDADIIEWRADFLEKISDVESVLAAAPAIREKF----AGKPLLF 79 (253)
T ss_pred eEeCCC-CcEEEEEe----CCCCHHHHHHHHHHHhhcCCCEEEEEechhhccCCHHHHHHHHHHHHHhc----CCCcEEE
Confidence 344555 23544444 23345555677777788899988 676644 23434444444433 2345443
Q ss_pred HHHH--hcCccCCCCHHHHHHHHHHHHhcC-CCEEEEec
Q 006395 286 ALEK--VDGIAENLSWEVFRDTLIEQAEQG-VDYFTIHA 321 (647)
Q Consensus 286 A~~k--~~g~~~dlt~e~~~d~i~eQaeqG-VDf~TIHa 321 (647)
.+.. -||. -..+.++.++.++.-++.| |||+.|=-
T Consensus 80 T~R~~~eGG~-~~~~~~~~~~ll~~~~~~~~~d~vDiEl 117 (253)
T PRK02412 80 TFRTAKEGGE-IALSDEEYLALIKAVIKSGLPDYIDVEL 117 (253)
T ss_pred EECChhhCCC-CCCCHHHHHHHHHHHHhcCCCCEEEEec
Confidence 3321 1444 5678899999999999999 99999853
No 219
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=31.91 E-value=56 Score=31.58 Aligned_cols=33 Identities=6% Similarity=0.050 Sum_probs=29.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHhcceEEEecCCCC
Q 006395 175 EMLYCATREKLDPEFVRAEVARGRAIIPSNKKH 207 (647)
Q Consensus 175 EMe~VA~~E~i~pE~vR~~VA~GraVIPaN~nh 207 (647)
-|..|++.-||+++.|.+-|.+||+.|..+.|.
T Consensus 48 ti~eV~e~tgVs~~~I~~~IreGRL~~~~~~nl 80 (137)
T TIGR03826 48 TVSEIVEETGVSEKLILKFIREGRLQLKHFPNL 80 (137)
T ss_pred CHHHHHHHHCcCHHHHHHHHHcCCeeccCCCCC
Confidence 477899999999999999999999999887654
No 220
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=31.75 E-value=3.8e+02 Score=24.08 Aligned_cols=132 Identities=11% Similarity=0.017 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEec
Q 006395 300 EVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSI 379 (647)
Q Consensus 300 e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlSL 379 (647)
+.+.+.++.-++.|+|++.+-. .... +... ....+ ..+-++.+.+++.+-.
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~--~~~~-~~~~----~~~~~----------------------~~~~~~~~~~~~~~~~ 62 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGT--RSSD-PEEA----ETDDK----------------------EVLKEVAAETDLPLGV 62 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEee--EEEC-cccC----CCccc----------------------cHHHHHHhhcCCcEEE
Confidence 5667777777888999976542 1111 1101 11111 4566667777776655
Q ss_pred cCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCC-CchHHHHHHHHHhcCCCCccccCccccccCC
Q 006395 380 GDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPM-HKIPENMQKQLEWCNEAPFYTLGPLTTDIAP 458 (647)
Q Consensus 380 GDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl-~~I~~nv~lqk~lc~~APfYvLGPLvTDIAp 458 (647)
..... |..|+.+ .+++++.+.|.+.+.=+.+|.+. ..+.+-++.-++.+.+.|+.+--...++
T Consensus 63 ~~~~~--------~~~~~~~-----~~a~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~--- 126 (200)
T cd04722 63 QLAIN--------DAAAAVD-----IAAAAARAAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGE--- 126 (200)
T ss_pred EEccC--------Cchhhhh-----HHHHHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEECCCCc---
Confidence 54321 1222222 12788899998877666666431 2233344444444433333222211111
Q ss_pred CchhHHHhHHHHHhhhcccceeeecC
Q 006395 459 GYDHITSAIGAANIGALGTALLCYVT 484 (647)
Q Consensus 459 GYDHItsAIGaA~aa~~Gad~LCYVT 484 (647)
++.. + ...+|+|++++..
T Consensus 127 -~~~~---~----~~~~g~d~i~~~~ 144 (200)
T cd04722 127 -LAAA---A----AEEAGVDEVGLGN 144 (200)
T ss_pred -cchh---h----HHHcCCCEEEEcC
Confidence 1221 1 4567999998754
No 221
>PRK07572 cytosine deaminase; Validated
Probab=31.72 E-value=2e+02 Score=31.14 Aligned_cols=44 Identities=14% Similarity=0.070 Sum_probs=29.4
Q ss_pred hhhHHHHHHHHhHhceeE--eccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCe
Q 006395 360 YEHWDEILDICNQYDVAL--SIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQ 416 (647)
Q Consensus 360 Y~~FD~ileI~k~YDVtl--SLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQ 416 (647)
.++++.+++.+++|++-+ =+..+..+.. ..+-.++++.+++|++
T Consensus 190 ~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~-------------~~~~~~~~~~~~~G~~ 235 (426)
T PRK07572 190 AESVRLLCEIAAERGLRVDMHCDESDDPLS-------------RHIETLAAETQRLGLQ 235 (426)
T ss_pred HHHHHHHHHHHHHcCCCeEEEECCCCChhH-------------HHHHHHHHHHHHhCCC
Confidence 389999999999999655 4445444321 1122356777788876
No 222
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=31.30 E-value=42 Score=35.49 Aligned_cols=105 Identities=20% Similarity=0.268 Sum_probs=55.2
Q ss_pred HHHHHHHHHHH----------HHHHHHHhcCCeEEe-eC---CCCCCCCchHHHHHHHHHhcC--CCCccccCccccccC
Q 006395 394 TAQFAELLTQG----------ELTRRAWDKDVQVMN-EG---PGHIPMHKIPENMQKQLEWCN--EAPFYTLGPLTTDIA 457 (647)
Q Consensus 394 ~AQ~~EL~~LG----------EL~krA~e~gVQVMI-EG---PGHVPl~~I~~nv~lqk~lc~--~APfYvLGPLvTDIA 457 (647)
...+++|...| +.+++|.+.||-+.| +| -||.. .++...+.|-.++++ .-|...-|=+ +
T Consensus 126 ~~~i~~l~~~gi~v~~~v~s~~~A~~a~~~G~D~iv~qG~eAGGH~g-~~~~~~~~L~~~v~~~~~iPViaAGGI----~ 200 (330)
T PF03060_consen 126 PEVIERLHAAGIKVIPQVTSVREARKAAKAGADAIVAQGPEAGGHRG-FEVGSTFSLLPQVRDAVDIPVIAAGGI----A 200 (330)
T ss_dssp HHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEE-TTSSEE----SSG-HHHHHHHHHHH-SS-EEEESS------
T ss_pred HHHHHHHHHcCCccccccCCHHHHHHhhhcCCCEEEEeccccCCCCC-ccccceeeHHHHHhhhcCCcEEEecCc----C
Confidence 44667776655 678889999997655 55 59988 333344444444433 2555555543 2
Q ss_pred CCchhHHHhH-HHHHhhhcccceeeecCchhhcCCCChhHHHHHHHHHHHHHhHhhhh
Q 006395 458 PGYDHITSAI-GAANIGALGTALLCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLA 514 (647)
Q Consensus 458 pGYDHItsAI-GaA~aa~~Gad~LCYVTPaEHLgLP~~eDVreGViA~kIAAHaaDla 514 (647)
-| ..|.+|+ =||-+.+.|+.|||- .| =+..+..|+-++.. ...|+.
T Consensus 201 dg-~~iaaal~lGA~gV~~GTrFl~t---~E---s~~~~~~K~~l~~a----~~~dtv 247 (330)
T PF03060_consen 201 DG-RGIAAALALGADGVQMGTRFLAT---EE---SGASDAYKQALVDA----TEEDTV 247 (330)
T ss_dssp SH-HHHHHHHHCT-SEEEESHHHHTS---TT---S-S-HHHHHHHHHG----GTT-EE
T ss_pred CH-HHHHHHHHcCCCEeecCCeEEec---cc---ccChHHHHHHHHhC----CCCCEE
Confidence 23 2355555 246666777777754 22 35557888887764 455664
No 223
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=31.25 E-value=4.6e+02 Score=28.14 Aligned_cols=135 Identities=19% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCEEEEec--cccccccc--cccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHh-c
Q 006395 300 EVFRDTLIEQAEQGVDYFTIHA--GVLLRYIP--LTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQY-D 374 (647)
Q Consensus 300 e~~~d~i~eQaeqGVDf~TIHa--Gv~~~~~~--~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~Y-D 374 (647)
++|.+..+.-.+.|.|.+=||+ |-++...- ...+|--.- |||+.-. -....+|++-.|+. +
T Consensus 141 ~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~y---GGslenR-----------~r~~~eiv~~ir~~vg 206 (343)
T cd04734 141 AAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEY---GGSLENR-----------MRFLLEVLAAVRAAVG 206 (343)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcC---CCCHHHH-----------hHHHHHHHHHHHHHcC
Q ss_pred eeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcC-Ce-EEeeCCCCCCC--------------CchHHHHHHHH
Q 006395 375 VALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKD-VQ-VMNEGPGHIPM--------------HKIPENMQKQL 438 (647)
Q Consensus 375 VtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~g-VQ-VMIEGPGHVPl--------------~~I~~nv~lqk 438 (647)
..+++| +|-+...+-.+.-...|.+ +|+++.-++| |+ +-|-+..+... ..-..-.+.-|
T Consensus 207 ~~~~v~--iRl~~~~~~~~G~~~~e~~---~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik 281 (343)
T cd04734 207 PDFIVG--IRISGDEDTEGGLSPDEAL---EIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIK 281 (343)
T ss_pred CCCeEE--EEeehhhccCCCCCHHHHH---HHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHH
Q ss_pred HhcCCCCccccCcccc
Q 006395 439 EWCNEAPFYTLGPLTT 454 (647)
Q Consensus 439 ~lc~~APfYvLGPLvT 454 (647)
+.+ +.|.++-|=+.|
T Consensus 282 ~~~-~ipvi~~G~i~~ 296 (343)
T cd04734 282 QAV-DLPVFHAGRIRD 296 (343)
T ss_pred HHc-CCCEEeeCCCCC
No 224
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=31.03 E-value=6e+02 Score=27.64 Aligned_cols=136 Identities=19% Similarity=0.131 Sum_probs=88.0
Q ss_pred cCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHH----------HHHHHHHhcCCeEEeeCC---
Q 006395 356 ENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQG----------ELTRRAWDKDVQVMNEGP--- 422 (647)
Q Consensus 356 ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LG----------EL~krA~e~gVQVMIEGP--- 422 (647)
+|++.+++|-||+-++-==|++|+|. +....++.+..+| +.+++|.+.|+-.+|+.+
T Consensus 89 ~~~~~~~~~~ii~~~~vpvv~~~~g~----------~~~~~i~~~~~~g~~v~~~v~~~~~A~~~~~~G~d~vI~~g~eA 158 (336)
T COG2070 89 RNAAEAGVDAIIEGAGVPVVSTSFGA----------PPAEFVARLKAAGIKVIHSVITVREALKAERAGADAVIAQGAEA 158 (336)
T ss_pred ccchHHhhhhHHhcCCCCEEeccCCC----------CcHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEecCCcC
Confidence 78888999988877666667888886 4455666666666 678999999999988753
Q ss_pred -CCCC----CCchHHHHHHHHHhcCCCCccccCccccccCCCchhHHHhHHHHHhhhcccceeeecCchhhcCCCChhHH
Q 006395 423 -GHIP----MHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALLCYVTPKEHLGLPNRDDV 497 (647)
Q Consensus 423 -GHVP----l~~I~~nv~lqk~lc~~APfYvLGPLvTDIApGYDHItsAIGaA~aa~~Gad~LCYVTPaEHLgLP~~eDV 497 (647)
||.= .-....=+..-.+.+++-|+-.-|= |+-|-+=-++=.=||-+.+.|+.||+-.= =+..+-.
T Consensus 159 GGH~g~~~~~~~t~~Lv~ev~~~~~~iPViAAGG----I~dg~~i~AAlalGA~gVq~GT~Fl~t~E------a~a~~~~ 228 (336)
T COG2070 159 GGHRGGVDLEVSTFALVPEVVDAVDGIPVIAAGG----IADGRGIAAALALGADGVQMGTRFLATKE------ADASDAY 228 (336)
T ss_pred CCcCCCCCCCccHHHHHHHHHHHhcCCCEEEecC----ccChHHHHHHHHhccHHHHhhhhhhcccc------cCCCHHH
Confidence 8954 3333444555555666556665555 55555434443446778899999997632 1222334
Q ss_pred HHHHHHHHHHHhHhhhhc
Q 006395 498 KAGVIAYKIAAHAADLAK 515 (647)
Q Consensus 498 reGViA~kIAAHaaDlaK 515 (647)
|+=+ +.|-..|++-
T Consensus 229 K~~l----~~a~~~Dtv~ 242 (336)
T COG2070 229 KQAL----LQATEDDTVL 242 (336)
T ss_pred HHHH----hcccccCeEE
Confidence 4333 3446667665
No 225
>PRK13206 ureC urease subunit alpha; Reviewed
Probab=30.92 E-value=1.7e+02 Score=34.37 Aligned_cols=78 Identities=27% Similarity=0.431 Sum_probs=52.2
Q ss_pred HHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCC
Q 006395 304 DTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGL 383 (647)
Q Consensus 304 d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlSLGDGL 383 (647)
+.|++|.+.|+..|.+|- .|- -+ -..++++|+.+++||+.+.+
T Consensus 210 ~~L~el~~aGA~GfKi~~--------------------------d~g-----~t--~~~i~~aL~~A~~~gv~V~i---- 252 (573)
T PRK13206 210 EALWEQLRGGAGGFKLHE--------------------------DWG-----ST--PAAIDACLRVADAAGVQVAL---- 252 (573)
T ss_pred HHHHHHHHCCCcEEeecC--------------------------ccC-----CC--HHHHHHHHHHHHHhCCEEEE----
Confidence 478999999999999992 110 11 23789999999999998874
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCC--CCCC
Q 006395 384 RPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGP--GHIP 426 (647)
Q Consensus 384 RPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGP--GHVP 426 (647)
-.|...++-|.|. ++.....|.-- -.-+||. ||+|
T Consensus 253 ----Hadtlne~g~~E~-t~aa~~gr~iH---~~H~egaggghap 289 (573)
T PRK13206 253 ----HSDTLNEAGFVED-TLAAIAGRSIH---AYHTEGAGGGHAP 289 (573)
T ss_pred ----ECCCccccchhhH-HHHHhcCCeEE---EEeccCCCcCccc
Confidence 3455566677777 55544333211 1236764 7988
No 226
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=30.92 E-value=2.1e+02 Score=26.40 Aligned_cols=65 Identities=18% Similarity=0.204 Sum_probs=43.9
Q ss_pred HHhcCCeEEeeCCCC--CCCCchHHHHHHHHHhcCCCCccccCccccccCCCchhHHHhHHHHHhh-hcccceeeec
Q 006395 410 AWDKDVQVMNEGPGH--IPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIG-ALGTALLCYV 483 (647)
Q Consensus 410 A~e~gVQVMIEGPGH--VPl~~I~~nv~lqk~lc~~APfYvLGPLvTDIApGYDHItsAIGaA~aa-~~Gad~LCYV 483 (647)
..+++ =|.|||||+ .|+...-.|.++-+.++ +|.. ||++..++. |..++.+...- ..|.+.++.|
T Consensus 97 ~~~~D-~viid~~g~~~~~~~~~~~~~dl~~~~~--~~vi----lV~~~~~~~--~~~~~~~~~~l~~~~~~i~gvv 164 (166)
T TIGR00347 97 EQKYD-FVLVEGAGGLCVPITEEYTTADLIKLLQ--LPVI----LVVRVKLGT--INHTLLTVEHARQTGLTLAGVI 164 (166)
T ss_pred HhcCC-EEEEEcCCccccCCCCCCcHHHHHHHhC--CCEE----EEECCCCcH--HHHHHHHHHHHHHCCCCeEEEE
Confidence 34444 478999986 78877667888888874 4542 556665554 77777666443 4588887765
No 227
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=30.78 E-value=6.8e+02 Score=26.61 Aligned_cols=121 Identities=15% Similarity=0.148 Sum_probs=69.1
Q ss_pred cCCceeEeeccccCCCCCChHHHHHHHHHHHH-h--CCCEeeecCCCCChHHHHHHHHh---------cCCCccccchhh
Q 006395 217 RNFLVKVNANIGNSAVASSIEEEVYKVQWATM-W--GADTVMDLSTGRHIHETREWILR---------NSAVPVGTVPIY 284 (647)
Q Consensus 217 ~g~~tKVNANIGtS~~~~~ie~EveKl~~A~~-~--GADtvMDLSTGgdi~~~R~~Il~---------~spvPvGTVPIY 284 (647)
+.|++||.. .+++++++.++...+ . +.+-.+|--.+=+.++.++.+=+ .-|+|....--|
T Consensus 160 ~~~KiKvg~--------~~~~~d~~~v~avr~~~g~~~~l~iDaN~~~~~~~A~~~~~~l~~~~~~~iEeP~~~~~~~~~ 231 (365)
T cd03318 160 RRFKLKMGA--------RPPADDLAHVEAIAKALGDRASVRVDVNQAWDESTAIRALPRLEAAGVELIEQPVPRENLDGL 231 (365)
T ss_pred eEEEEEeCC--------CChHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHhcCcceeeCCCCcccHHHH
Confidence 456777631 256777766655433 3 45567788777788877664322 335565665556
Q ss_pred hHHHHhcCccC-----CCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCch
Q 006395 285 QALEKVDGIAE-----NLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFA 359 (647)
Q Consensus 285 qA~~k~~g~~~-----dlt~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENpl 359 (647)
+.|.+..+.+. -.+.+++++.|+. +.||++-+- -.|+-|
T Consensus 232 ~~l~~~~~~pia~dE~~~~~~~~~~~i~~---~~~d~~~~d-----------~~~~GG---------------------- 275 (365)
T cd03318 232 ARLRSRNRVPIMADESVSGPADAFELARR---GAADVFSLK-----------IAKSGG---------------------- 275 (365)
T ss_pred HHHHhhcCCCEEcCcccCCHHHHHHHHHh---CCCCeEEEe-----------ecccCC----------------------
Confidence 66654322221 1244555555543 346665221 123322
Q ss_pred hhhHHHHHHHHhHhceeEeccC
Q 006395 360 YEHWDEILDICNQYDVALSIGD 381 (647)
Q Consensus 360 Y~~FD~ileI~k~YDVtlSLGD 381 (647)
.+.+-+++++|++|++.+..|.
T Consensus 276 it~~~~~~~~a~~~gi~~~~~~ 297 (365)
T cd03318 276 LRRAQKVAAIAEAAGIALYGGT 297 (365)
T ss_pred HHHHHHHHHHHHHcCCceeecC
Confidence 2677888999999999877653
No 228
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=30.60 E-value=5.8e+02 Score=27.57 Aligned_cols=159 Identities=19% Similarity=0.271 Sum_probs=87.5
Q ss_pred ChHHHHHHHHHHH-HhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHH----
Q 006395 235 SIEEEVYKVQWAT-MWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQ---- 309 (647)
Q Consensus 235 ~ie~EveKl~~A~-~~GADtvMDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQ---- 309 (647)
+.-..++|+.-++ ++|+-.++-|+-+|-....-...+.-|+ ||... ....+..||.|++.++|+.-
T Consensus 78 ~~i~~~r~l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~-----~~~~~----~~~~p~~mt~eeI~~ii~~f~~aA 148 (337)
T PRK13523 78 EHIEGLHKLVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSA-----IPFDE----KSKTPVEMTKEQIKETVLAFKQAA 148 (337)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCC-----CCCCC----CCCCCCcCCHHHHHHHHHHHHHHH
Confidence 4556677765555 5688899999887753210000111122 22211 12345789999888877643
Q ss_pred ---HhcCCCEEEEecc---ccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhc--eeEeccC
Q 006395 310 ---AEQGVDYFTIHAG---VLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYD--VALSIGD 381 (647)
Q Consensus 310 ---aeqGVDf~TIHaG---v~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YD--VtlSLGD 381 (647)
.+.|.|.+=||+| +.-+.+....++.+. .-|||+. .-| -|+.+-.|.|-+-+ .+. |-+|.-|
T Consensus 149 ~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD--~yGGsle-nR~------Rf~~eii~~ir~~~-~~~v~vRis~~d 218 (337)
T PRK13523 149 VRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTD--EYGGSPE-NRY------RFLREIIDAVKEVW-DGPLFVRISASD 218 (337)
T ss_pred HHHHHcCCCEEEEccccchHHHHhcCCccCCcCC--CCCCCHH-HHH------HHHHHHHHHHHHhc-CCCeEEEecccc
Confidence 4579999999998 444555443333333 2588843 322 35566666665554 233 3455545
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCC
Q 006395 382 GLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPG 423 (647)
Q Consensus 382 GLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPG 423 (647)
.+ +| ..+ ++|. .+++++.-+.||...-=..|
T Consensus 219 ~~-~~----G~~---~~e~---~~i~~~l~~~gvD~i~vs~g 249 (337)
T PRK13523 219 YH-PG----GLT---VQDY---VQYAKWMKEQGVDLIDVSSG 249 (337)
T ss_pred cC-CC----CCC---HHHH---HHHHHHHHHcCCCEEEeCCC
Confidence 43 22 222 2333 44556666778875543444
No 229
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=30.53 E-value=58 Score=33.30 Aligned_cols=176 Identities=15% Similarity=0.159 Sum_probs=105.3
Q ss_pred ccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcC
Q 006395 335 MTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKD 414 (647)
Q Consensus 335 ~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~g 414 (647)
+.+|..|--.-...|....+. +.|+.||++++ ..-|+++ -++--. ...|++..|-++|
T Consensus 4 LvaV~D~~~e~a~~~a~~~g~--~~~~d~~eLl~--~~vDaVv------------iatp~~------~H~e~a~~aL~aG 61 (229)
T TIGR03855 4 IAAVYDRNPKDAKELAERCGA--KIVSDFDEFLP--EDVDIVV------------EAASQE------AVKEYAEKILKNG 61 (229)
T ss_pred EEEEECCCHHHHHHHHHHhCC--ceECCHHHHhc--CCCCEEE------------ECCChH------HHHHHHHHHHHCC
Confidence 344444443333344444432 57888888875 4456544 222222 2367788899999
Q ss_pred CeEEeeCCCCCC-CCchHHHHHHHHHhcCCCCccccCccccccCCCchhHHHhHHHHHhhh-cccceeeecCch--hhcC
Q 006395 415 VQVMNEGPGHIP-MHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGA-LGTALLCYVTPK--EHLG 490 (647)
Q Consensus 415 VQVMIEGPGHVP-l~~I~~nv~lqk~lc~~APfYvLGPLvTDIApGYDHItsAIGaA~aa~-~Gad~LCYVTPa--EHLg 490 (647)
.-|+++-||-.- ....++=++.-++ ++.++|+- +|+=..--+| -+|. -+-+.+.|.|-+ .-|+
T Consensus 62 khVl~~s~gAlad~e~~~~l~~aA~~--~g~~l~i~--------sGai~g~d~l---~a~~ig~~~~V~i~~~k~p~~~~ 128 (229)
T TIGR03855 62 KDLLIMSVGALADRELRERLREVARS--SGRKVYIP--------SGAIGGLDAL---KAASLGRIERVVLTTTKPPASLG 128 (229)
T ss_pred CCEEEECCcccCCHHHHHHHHHHHHh--cCCEEEEC--------hHHHHHHHHH---HhcccCCceEEEEEEecChHHhc
Confidence 999999988653 3444444455555 67888864 4654433344 2233 344677777643 2232
Q ss_pred --CCChhHHHHHHHHHHHHHhHhhhhcCCcchhhHHHHHHHHHhhcChHHHHhhcCChHHHHhhhhcc
Q 006395 491 --LPNRDDVKAGVIAYKIAAHAADLAKGHPLAQTWDDALSKARFEFRWMDQFALSLDPMTAMSFHDET 556 (647)
Q Consensus 491 --LP~~eDVreGViA~kIAAHaaDlaKg~p~A~~rD~~mS~AR~~~dWe~Qf~LalDPe~Ar~~~~~~ 556 (647)
+..+.-+.+| -|.+.++..|.-.+==-++|-|= -|| -+.+|--||...+..|+=.
T Consensus 129 ~~~~~~~~~f~G--------~a~ea~~~fP~n~Nva~a~alA~-g~d--~~v~i~adp~~~~n~h~i~ 185 (229)
T TIGR03855 129 RDIKEPTTIFEG--------SASEAIKLFPANINVAATLSLAA-GFD--AKVEIVADPEADRNIHEIF 185 (229)
T ss_pred CCCCCCEEEEEe--------cHHHHHHHCCchHHHHHHHHHhc-CCC--cEEEEEEcCCCCCcEEEEE
Confidence 2223334444 35566678887777677777775 677 8889999999888777654
No 230
>PRK01060 endonuclease IV; Provisional
Probab=30.35 E-value=5e+02 Score=26.03 Aligned_cols=98 Identities=14% Similarity=0.183 Sum_probs=60.6
Q ss_pred HHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhcee---Ee
Q 006395 302 FRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVA---LS 378 (647)
Q Consensus 302 ~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVt---lS 378 (647)
+-++|+.-++.|.|.|=+-.+--.. |- ...-..+..+++-+.+++|++. ++
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~----------------------~~----~~~~~~~~~~~lk~~~~~~gl~~~~~~ 67 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQ----------------------WK----RKPLEELNIEAFKAACEKYGISPEDIL 67 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCC----------------------Cc----CCCCCHHHHHHHHHHHHHcCCCCCceE
Confidence 6778888899999999875431100 10 0011233466777888899987 55
Q ss_pred ccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCC
Q 006395 379 IGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIP 426 (647)
Q Consensus 379 LGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVP 426 (647)
.-... +..+++...+-.-..+..+-+-.+.|.+.|+.+++=-||+.+
T Consensus 68 ~h~~~-~~nl~~~d~~~r~~s~~~~~~~i~~A~~lga~~vv~h~G~~~ 114 (281)
T PRK01060 68 VHAPY-LINLGNPNKEILEKSRDFLIQEIERCAALGAKLLVFHPGSHL 114 (281)
T ss_pred Eecce-EecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcCC
Confidence 53332 133444333323333556667778889999998888888854
No 231
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase. This subfamily is composed of Bacillus circulans BtrK decarboxylase and similar proteins. These proteins are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases, eukaryotic ornithine decarboxylases and diaminopimelate decarboxylases. BtrK is presumed to function as a PLP-dependent decarboxylase involved in the biosynthesis of the aminoglycoside antibiotic butirosin. Homodimer formation and the presence of the PLP cofactor may be required for catalytic activity.
Probab=30.32 E-value=6.7e+02 Score=26.44 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHHHh-cCCCEEEEecc
Q 006395 297 LSWEVFRDTLIEQAE-QGVDYFTIHAG 322 (647)
Q Consensus 297 lt~e~~~d~i~eQae-qGVDf~TIHaG 322 (647)
++.+++.+.++.-.+ .|+.+..||+-
T Consensus 151 ~~~~~~~~~~~~~~~~~~l~l~Glh~h 177 (382)
T cd06839 151 IDVEELPAVLARIAALPNLRFVGLHIY 177 (382)
T ss_pred CCHHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 345666555544333 67888777774
No 232
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=30.07 E-value=91 Score=29.90 Aligned_cols=55 Identities=24% Similarity=0.365 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhcee
Q 006395 297 LSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVA 376 (647)
Q Consensus 297 lt~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVt 376 (647)
+..+.+++.|++-.+.||+++-+-.. +-.++=+++...+|.++|++|++.
T Consensus 9 ~~~~~~~~~l~~~~~~gv~~v~lR~k------------------------------~~~~~~~~~~a~~l~~~~~~~~~~ 58 (180)
T PF02581_consen 9 LCGDDFLEQLEAALAAGVDLVQLREK------------------------------DLSDEELLELARRLAELCQKYGVP 58 (180)
T ss_dssp TSTCHHHHHHHHHHHTT-SEEEEE-S------------------------------SS-HHHHHHHHHHHHHHHHHTTGC
T ss_pred hhcchHHHHHHHHHHCCCcEEEEcCC------------------------------CCCccHHHHHHHHHHHHhhcceEE
Confidence 44678999999999999999866442 223345678889999999999999
Q ss_pred EeccC
Q 006395 377 LSIGD 381 (647)
Q Consensus 377 lSLGD 381 (647)
|-+-|
T Consensus 59 liin~ 63 (180)
T PF02581_consen 59 LIIND 63 (180)
T ss_dssp EEEES
T ss_pred EEecC
Confidence 99877
No 233
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=30.01 E-value=33 Score=35.77 Aligned_cols=27 Identities=26% Similarity=0.206 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecc
Q 006395 296 NLSWEVFRDTLIEQAEQGVDYFTIHAG 322 (647)
Q Consensus 296 dlt~e~~~d~i~eQaeqGVDf~TIHaG 322 (647)
-++.+.+.+.|..-|.-+...+-+|-.
T Consensus 12 ~~~~~~lk~~id~ma~~K~N~lhlHl~ 38 (303)
T cd02742 12 FLSVESIKRTIDVLARYKINTFHWHLT 38 (303)
T ss_pred CcCHHHHHHHHHHHHHhCCcEEEEeee
Confidence 467899999999999999999999964
No 234
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=29.93 E-value=54 Score=37.08 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=28.7
Q ss_pred EEeeCCCC-CCCCchHHHHHHHHHhcCCCCccc
Q 006395 417 VMNEGPGH-IPMHKIPENMQKQLEWCNEAPFYT 448 (647)
Q Consensus 417 VMIEGPGH-VPl~~I~~nv~lqk~lc~~APfYv 448 (647)
+.|.|.|| ||.++=+.-.++-+++-.+.|++.
T Consensus 420 ~tVrGaGH~VP~~~p~~al~m~~~fl~g~~l~~ 452 (454)
T KOG1282|consen 420 ATVRGAGHMVPYDKPESALIMFQRFLNGQPLPS 452 (454)
T ss_pred EEEeCCcccCCCCCcHHHHHHHHHHHcCCCCCC
Confidence 99999999 999999988899999888888753
No 235
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=29.86 E-value=1.4e+02 Score=28.87 Aligned_cols=67 Identities=18% Similarity=0.161 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEec
Q 006395 300 EVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSI 379 (647)
Q Consensus 300 e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlSL 379 (647)
+.+.+.|++-+++|+|++.+=-..+-.+......+. + ...+.+.-..++.|.+++++|++.+-+
T Consensus 18 ~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~~~----~------------~~~~~~~~~~~~~l~~~a~~~~i~ii~ 81 (253)
T cd07197 18 AKALRLIKEAAEQGADLIVLPELFLTGYSFESAKED----L------------DLAEELDGPTLEALAELAKELGIYIVA 81 (253)
T ss_pred HHHHHHHHHHHHCCCCEEEcCCccccCCccccchhh----h------------hhcccCCchHHHHHHHHHHHhCeEEEe
Confidence 556677777788999998543221111100000000 0 112233446789999999999999998
Q ss_pred cCC
Q 006395 380 GDG 382 (647)
Q Consensus 380 GDG 382 (647)
|=-
T Consensus 82 G~~ 84 (253)
T cd07197 82 GIA 84 (253)
T ss_pred eeE
Confidence 844
No 236
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=29.85 E-value=4.1e+02 Score=27.13 Aligned_cols=94 Identities=22% Similarity=0.250 Sum_probs=63.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhc
Q 006395 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYD 374 (647)
Q Consensus 295 ~dlt~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YD 374 (647)
.+.+.+++...+..-.+.+==.+.-|.|..+.. --.-+|.....+++++.|++++
T Consensus 106 ~~~~~~~~~~~~~~a~~~~~v~il~H~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~g 160 (237)
T COG1387 106 EDQDEEDYTERLIAAMSNGAVDILAHPGGRLLG-------------------------RIDRGAYKEDIEELIELAEKNG 160 (237)
T ss_pred cccCHHHHHHHHHHHHcCCCccEEecCCccccc-------------------------cccccccHHHHHHHHHHHHHhC
Confidence 677888888888888877655566777754433 1112456667777888888888
Q ss_pred eeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCC
Q 006395 375 VALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPM 427 (647)
Q Consensus 375 VtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl 427 (647)
+.|-+--- | ..+....++++.|+|.|+.+-|=.=+|.|-
T Consensus 161 ~aleins~--~------------~~~~~~~~~~~~~~e~G~~~~i~tDaH~~~ 199 (237)
T COG1387 161 KALEINSR--P------------GRLDPNSEILRLARELGVKLAIGTDAHRPG 199 (237)
T ss_pred cEEeecCC--c------------CccCchHHHHHHHHHhCCeEEeecCcCChh
Confidence 77776432 2 233445677777778888888777777773
No 237
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=29.68 E-value=41 Score=34.83 Aligned_cols=185 Identities=18% Similarity=0.196 Sum_probs=85.1
Q ss_pred HHHHHHhCCCEeeecCCCCChHHHHHHHHhcC-------CCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCC
Q 006395 243 VQWATMWGADTVMDLSTGRHIHETREWILRNS-------AVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVD 315 (647)
Q Consensus 243 l~~A~~~GADtvMDLSTGgdi~~~R~~Il~~s-------pvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGVD 315 (647)
.+.|.+.|||+|=-=.- ...+-+.++. +-+-+..|.|+.+++. .|++|++.+..+.--+.|++
T Consensus 2 I~~A~~aGaDaVKFQ~~-----~~~~l~~~~~~~~~y~~~~~~~~~~~~~~~~~~-----el~~e~~~~L~~~~~~~gi~ 71 (241)
T PF03102_consen 2 IDAAAEAGADAVKFQTF-----TAEELYSPNAYKAPYQSPNGWGDESYYELFKKL-----ELSEEQHKELFEYCKELGID 71 (241)
T ss_dssp HHHHHHHT-SEEEEEEB------HHHHCSGGGGG-------TT-SSTHHHHHHHH-----SS-HHHHHHHHHHHHHTT-E
T ss_pred HHHHHHhCCCEEEEEEE-----chhhhcChhhhcccccccCCCCCCcHHHHHHHh-----cCCHHHHHHHHHHHHHcCCE
Confidence 35788999999842111 1111111221 2235677899988874 59999999999998999999
Q ss_pred EEEEeccccccccccc---cCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCC
Q 006395 316 YFTIHAGVLLRYIPLT---AKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDAN 392 (647)
Q Consensus 316 f~TIHaGv~~~~~~~~---~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~ 392 (647)
||+==.. .+.++.. .--..-|-| .-.++++ ||+-+.+.+.-+-|.=|+
T Consensus 72 f~stpfd--~~s~d~l~~~~~~~~KIaS-----------------~dl~n~~-lL~~~A~tgkPvIlSTG~--------- 122 (241)
T PF03102_consen 72 FFSTPFD--EESVDFLEELGVPAYKIAS-----------------GDLTNLP-LLEYIAKTGKPVILSTGM--------- 122 (241)
T ss_dssp EEEEE-S--HHHHHHHHHHT-SEEEE-G-----------------GGTT-HH-HHHHHHTT-S-EEEE-TT---------
T ss_pred EEECCCC--HHHHHHHHHcCCCEEEecc-----------------ccccCHH-HHHHHHHhCCcEEEECCC---------
Confidence 9975443 2222211 000111111 1233555 666666666544443333
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCeEEee-CCCCCCCCchHHHHHHHHHhcCCCCccccCccccccCCCc-hhHHHhHHHH
Q 006395 393 DTAQFAELLTQGELTRRAWDKDVQVMNE-GPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGY-DHITSAIGAA 470 (647)
Q Consensus 393 D~AQ~~EL~~LGEL~krA~e~gVQVMIE-GPGHVPl~~I~~nv~lqk~lc~~APfYvLGPLvTDIApGY-DHItsAIGaA 470 (647)
+-+.|+..--+..+++ .+.|+.+- ..--.|-.-=..|+.....|=.--| +.-|| ||-.+..-..
T Consensus 123 --stl~EI~~Av~~~~~~--~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~----------~~vG~SDHt~g~~~~~ 188 (241)
T PF03102_consen 123 --STLEEIERAVEVLREA--GNEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG----------VPVGYSDHTDGIEAPI 188 (241)
T ss_dssp ----HHHHHHHHHHHHHH--CT--EEEEEE-SSSS--GGG--TTHHHHHHHHST----------SEEEEEE-SSSSHHHH
T ss_pred --CCHHHHHHHHHHHHhc--CCCCEEEEecCCCCCCChHHcChHHHHHHHHhcC----------CCEEeCCCCCCcHHHH
Confidence 3455555554555444 44555543 3444443333334333332222111 11255 6766544455
Q ss_pred Hhhhccccee
Q 006395 471 NIGALGTALL 480 (647)
Q Consensus 471 ~aa~~Gad~L 480 (647)
+|.+.||.++
T Consensus 189 ~AvalGA~vI 198 (241)
T PF03102_consen 189 AAVALGARVI 198 (241)
T ss_dssp HHHHTT-SEE
T ss_pred HHHHcCCeEE
Confidence 6667898875
No 238
>PRK06740 histidinol-phosphatase; Validated
Probab=29.61 E-value=1.1e+02 Score=32.80 Aligned_cols=86 Identities=15% Similarity=0.199 Sum_probs=45.0
Q ss_pred CCChHHHHHHHHHHHHhCCC--Ee-----eecCCCCChHHHHHHHHhcC--CCccccchhhh--------HHHHhc-Ccc
Q 006395 233 ASSIEEEVYKVQWATMWGAD--TV-----MDLSTGRHIHETREWILRNS--AVPVGTVPIYQ--------ALEKVD-GIA 294 (647)
Q Consensus 233 ~~~ie~EveKl~~A~~~GAD--tv-----MDLSTGgdi~~~R~~Il~~s--pvPvGTVPIYq--------A~~k~~-g~~ 294 (647)
...+-+|+++|+. +|..+ .| +|.-.+ ....+++ +++.. ..-||.|=-.. ..+... +..
T Consensus 121 l~~Y~~ei~~Lke--kY~~~~I~Il~GlE~dy~~~-~~~~~~~-~l~~~~~DyvIgSVH~i~g~~~~~~~~~~~~~~~~~ 196 (331)
T PRK06740 121 LDDFTKAIEEAKE--RWSKRGVTLKLGIEADYFIG-GEQELQS-LLALGDFDYVIGSVHFLNGWGFDNPDTKEYFEEHDL 196 (331)
T ss_pred HHHHHHHHHHHHH--HhccCCCeEEEEEEeccCCC-cHHHHHH-HHhcCCCCEEEEeeeEeCCcCCCCccHHHHhcCCCH
Confidence 3455667777774 55432 34 555433 3456775 55433 45677662111 112221 222
Q ss_pred CCCCHHHHHHHHHHHHhcC-CCEEEEecccc
Q 006395 295 ENLSWEVFRDTLIEQAEQG-VDYFTIHAGVL 324 (647)
Q Consensus 295 ~dlt~e~~~d~i~eQaeqG-VDf~TIHaGv~ 324 (647)
.+ -++.+++.+++-++.| +|++ =|..+-
T Consensus 197 ~~-~~~~Yf~~~~~~i~~~~fdvI-gHpDli 225 (331)
T PRK06740 197 YA-LYDTFFKTVECAIRSELFDII-AHLDNI 225 (331)
T ss_pred HH-HHHHHHHHHHHHHHcCCCCEe-eCccHH
Confidence 22 2477889999888765 4444 366543
No 239
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=29.59 E-value=2.5e+02 Score=30.44 Aligned_cols=122 Identities=16% Similarity=0.153 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHH-HhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHH-HHhcCccCCCCHHHHHHHHHHH----
Q 006395 236 IEEEVYKVQWAT-MWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQAL-EKVDGIAENLSWEVFRDTLIEQ---- 309 (647)
Q Consensus 236 ie~EveKl~~A~-~~GADtvMDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~-~k~~g~~~dlt~e~~~d~i~eQ---- 309 (647)
.-+-++|+.-++ +.|+=.++-|.-+|--..- . .....|++-.++-... ......+..||.+++-++++.-
T Consensus 81 ~i~~~~~l~~~vh~~G~~i~~QL~H~G~~~~~--~--~~~~~~~~ps~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA 156 (370)
T cd02929 81 DIRNLAAMTDAVHKHGALAGIELWHGGAHAPN--R--ESRETPLGPSQLPSEFPTGGPVQAREMDKDDIKRVRRWYVDAA 156 (370)
T ss_pred HHHHHHHHHHHHHHCCCeEEEecccCCCCCCc--c--CCCCCccCCCCCCCCccccCCCCCccCCHHHHHHHHHHHHHHH
Confidence 345566655544 5688889999877732110 0 0011222222111110 0012246789999988887755
Q ss_pred ---HhcCCCEEEEeccc---cccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHH
Q 006395 310 ---AEQGVDYFTIHAGV---LLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDIC 370 (647)
Q Consensus 310 ---aeqGVDf~TIHaGv---~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~ 370 (647)
.+.|.|.+=||+|- .-+.+.-..++.|+ --|||+. ++-.|+.+-.+.|-+-+
T Consensus 157 ~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD--~yGGsle-------nR~Rf~~eii~aIr~~v 214 (370)
T cd02929 157 LRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTD--EYGGSLE-------NRARFWRETLEDTKDAV 214 (370)
T ss_pred HHHHHcCCCEEEEcccccchHHHhhCccccCCcc--ccCCChH-------hhhHHHHHHHHHHHHHc
Confidence 35799999999974 33444334456666 5799984 33445555555555544
No 240
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=29.22 E-value=1.6e+02 Score=29.28 Aligned_cols=67 Identities=27% Similarity=0.319 Sum_probs=46.7
Q ss_pred CCCEe---eecCCCC---ChHHHHHHHHhcCCCccccchhhhHHHHh--cCccCCCCHHHHHHHHHHHHhcCCCEEEEec
Q 006395 250 GADTV---MDLSTGR---HIHETREWILRNSAVPVGTVPIYQALEKV--DGIAENLSWEVFRDTLIEQAEQGVDYFTIHA 321 (647)
Q Consensus 250 GADtv---MDLSTGg---di~~~R~~Il~~spvPvGTVPIYqA~~k~--~g~~~dlt~e~~~d~i~eQaeqGVDf~TIHa 321 (647)
|||.| +|+.... ++.+.-+.|.+..+ +||-=.+... ||. -+.+.+..++.++.-++.|+||+.|=-
T Consensus 24 ~aD~vElR~D~~~~~~~~~~~~~~~~lr~~~~-----~piI~T~R~~~eGG~-~~~~~~~~~~ll~~~~~~~~d~vDiEl 97 (225)
T cd00502 24 GADAVELRVDLLEDPSIDDVAEQLSLLRELTP-----LPIIFTVRTKSEGGN-FEGSEEEYLELLEEALKLGPDYVDIEL 97 (225)
T ss_pred CCCEEEEEEeeccccchHHHHHHHHHHHHhCC-----CCEEEEEcccccCCC-cCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 99987 7887765 34444455555554 4554444322 444 478899999999999999999999864
Q ss_pred c
Q 006395 322 G 322 (647)
Q Consensus 322 G 322 (647)
-
T Consensus 98 ~ 98 (225)
T cd00502 98 D 98 (225)
T ss_pred c
Confidence 3
No 241
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=29.19 E-value=1.3e+02 Score=28.53 Aligned_cols=60 Identities=17% Similarity=0.135 Sum_probs=41.2
Q ss_pred HHHHHHHHhHhceeEeccC-C-----------CCCCCcc-CCCcHHHHHH----HHHHHHHHHHHHhcCCeEEeeCC
Q 006395 363 WDEILDICNQYDVALSIGD-G-----------LRPGSIY-DANDTAQFAE----LLTQGELTRRAWDKDVQVMNEGP 422 (647)
Q Consensus 363 FD~ileI~k~YDVtlSLGD-G-----------LRPG~i~-DA~D~AQ~~E----L~~LGEL~krA~e~gVQVMIEGP 422 (647)
+...++.+++++..|+|.| | ++|-.|- |++--..+.+ ...+-.+.+.|...|++|++||-
T Consensus 134 ~~~~~~~l~~~G~~l~ld~~g~~~~~~~~l~~~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gV 210 (240)
T cd01948 134 ALATLRRLRALGVRIALDDFGTGYSSLSYLKRLPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEGV 210 (240)
T ss_pred HHHHHHHHHHCCCeEEEeCCCCcHhhHHHHHhCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEec
Confidence 6778888999999999976 2 3444332 3222222211 34567888999999999999984
No 242
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=29.06 E-value=89 Score=35.60 Aligned_cols=63 Identities=29% Similarity=0.307 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhCCCEe-eecCCCCC------hHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHH
Q 006395 238 EEVYKVQWATMWGADTV-MDLSTGRH------IHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQA 310 (647)
Q Consensus 238 ~EveKl~~A~~~GADtv-MDLSTGgd------i~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQa 310 (647)
+-++.++..+++|+|.| +|.+-|-+ |.++|+..=...+|-.|||=-++. ..+. .
T Consensus 242 ~~~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~---------------a~~l----i 302 (502)
T PRK07107 242 DYAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREG---------------FRYL----A 302 (502)
T ss_pred hHHHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHH---------------HHHH----H
Confidence 34677888889999998 78555542 444444321112333445544444 3333 3
Q ss_pred hcCCCEEEE
Q 006395 311 EQGVDYFTI 319 (647)
Q Consensus 311 eqGVDf~TI 319 (647)
+.|+|++.|
T Consensus 303 ~aGAd~I~v 311 (502)
T PRK07107 303 EAGADFVKV 311 (502)
T ss_pred HcCCCEEEE
Confidence 579999866
No 243
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=28.85 E-value=1.2e+02 Score=31.30 Aligned_cols=77 Identities=22% Similarity=0.254 Sum_probs=51.9
Q ss_pred CCChHHHHHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhc
Q 006395 233 ASSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQ 312 (647)
Q Consensus 233 ~~~ie~EveKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeq 312 (647)
..++++=++.++...++|||.|+=-+. .+.++++ .+.+..++|+-.+|- ++ .+|.++| .+-
T Consensus 151 ~~~~deaI~R~~aY~eAGAD~ifi~~~-~~~~~i~-~~~~~~~~Pl~v~~~-------~~---~~~~~eL-------~~l 211 (238)
T PF13714_consen 151 EEGLDEAIERAKAYAEAGADMIFIPGL-QSEEEIE-RIVKAVDGPLNVNPG-------PG---TLSAEEL-------AEL 211 (238)
T ss_dssp HHHHHHHHHHHHHHHHTT-SEEEETTS-SSHHHHH-HHHHHHSSEEEEETT-------SS---SS-HHHH-------HHT
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCC-CCHHHHH-HHHHhcCCCEEEEcC-------CC---CCCHHHH-------HHC
Confidence 457899999999999999999995443 4666653 444444677666552 11 1555544 678
Q ss_pred CCCEEEEecccccccc
Q 006395 313 GVDYFTIHAGVLLRYI 328 (647)
Q Consensus 313 GVDf~TIHaGv~~~~~ 328 (647)
||..++++....+..+
T Consensus 212 Gv~~v~~~~~~~~aa~ 227 (238)
T PF13714_consen 212 GVKRVSYGNSLLRAAM 227 (238)
T ss_dssp TESEEEETSHHHHHHH
T ss_pred CCcEEEEcHHHHHHHH
Confidence 9999999987655443
No 244
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=28.81 E-value=47 Score=35.22 Aligned_cols=80 Identities=13% Similarity=0.101 Sum_probs=50.8
Q ss_pred ChHHHHHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCC
Q 006395 235 SIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGV 314 (647)
Q Consensus 235 ~ie~EveKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGV 314 (647)
++++=++.++...++|||.|+=-+ -.+..++++ +.+..++|+=..++ . +|....+|.++ -.+-||
T Consensus 159 g~deAI~Ra~ay~~AGAD~vfi~g-~~~~e~i~~-~~~~i~~Pl~~n~~-----~-~~~~p~~s~~e-------L~~lGv 223 (285)
T TIGR02317 159 GLDAAIERAKAYVEAGADMIFPEA-LTSLEEFRQ-FAKAVKVPLLANMT-----E-FGKTPLFTADE-------LREAGY 223 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCC-CCCHHHHHH-HHHhcCCCEEEEec-----c-CCCCCCCCHHH-------HHHcCC
Confidence 589999999999999999999543 235666653 44455555521111 1 12223344443 467899
Q ss_pred CEEEEeccccccccc
Q 006395 315 DYFTIHAGVLLRYIP 329 (647)
Q Consensus 315 Df~TIHaGv~~~~~~ 329 (647)
.++.+-....+..+.
T Consensus 224 ~~v~~~~~~~~aa~~ 238 (285)
T TIGR02317 224 KMVIYPVTAFRAMNK 238 (285)
T ss_pred cEEEEchHHHHHHHH
Confidence 999988766554444
No 245
>PRK06267 hypothetical protein; Provisional
Probab=28.58 E-value=7.7e+02 Score=26.58 Aligned_cols=33 Identities=12% Similarity=-0.024 Sum_probs=27.9
Q ss_pred CchhhcCCCChhHHHHHHHHHHHHHhHhhhhcC
Q 006395 484 TPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKG 516 (647)
Q Consensus 484 TPaEHLgLP~~eDVreGViA~kIAAHaaDlaKg 516 (647)
||.++...|+.+++..=+-++||.-.-+.|..|
T Consensus 210 Tp~~~~~~~s~~e~lr~ia~~Rl~lP~~~I~~~ 242 (350)
T PRK06267 210 TIFENKPSVTTLEYMNWVSSVRLNFPKIKIITG 242 (350)
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHCCCCCcchh
Confidence 777888889999999999999998877776555
No 246
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=28.51 E-value=7.1e+02 Score=26.16 Aligned_cols=146 Identities=16% Similarity=0.222 Sum_probs=73.2
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhH-hce
Q 006395 297 LSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQ-YDV 375 (647)
Q Consensus 297 lt~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~-YDV 375 (647)
-+.++|.+..+.-.+.|+|.+-||+|- | .++++. .-|||.+.. || ....+|++-.++ -++
T Consensus 72 ~~~~~~~~aa~~~~~~G~d~IelN~gc-----P--~~~~~~--~~~Gs~l~~--------~~--~~~~ei~~~vr~~~~~ 132 (319)
T TIGR00737 72 SDPDTMAEAAKINEELGADIIDINMGC-----P--VPKITK--KGAGSALLR--------DP--DLIGKIVKAVVDAVDI 132 (319)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCC-----C--HHHhcC--CCccchHhC--------CH--HHHHHHHHHHHhhcCC
Confidence 367899999887777899999999994 2 122221 246765432 22 222333433333 233
Q ss_pred eEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEe-eC----CCCCCCCchHHHHHHHHHhcCCCCccccC
Q 006395 376 ALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMN-EG----PGHIPMHKIPENMQKQLEWCNEAPFYTLG 450 (647)
Q Consensus 376 tlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMI-EG----PGHVPl~~I~~nv~lqk~lc~~APfYvLG 450 (647)
.+|+ -+|.|- |-++ .++-++++++.+.||...+ -| .|+-+-.. -+-++.-++.++ .|+..-|
T Consensus 133 pv~v--Kir~g~--~~~~-------~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~-~~~i~~i~~~~~-ipvi~nG 199 (319)
T TIGR00737 133 PVTV--KIRIGW--DDAH-------INAVEAARIAEDAGAQAVTLHGRTRAQGYSGEAN-WDIIARVKQAVR-IPVIGNG 199 (319)
T ss_pred CEEE--EEEccc--CCCc-------chHHHHHHHHHHhCCCEEEEEcccccccCCCchh-HHHHHHHHHcCC-CcEEEeC
Confidence 3333 245553 1111 1245788888888886552 22 12211011 122333344343 6777777
Q ss_pred ccccccCCCchhHHHhH--HHHHhhhcccce
Q 006395 451 PLTTDIAPGYDHITSAI--GAANIGALGTAL 479 (647)
Q Consensus 451 PLvTDIApGYDHItsAI--GaA~aa~~Gad~ 479 (647)
=+.| ++++-.++ ++|-+.+.|-.+
T Consensus 200 gI~~-----~~da~~~l~~~gad~VmigR~~ 225 (319)
T TIGR00737 200 DIFS-----PEDAKAMLETTGCDGVMIGRGA 225 (319)
T ss_pred CCCC-----HHHHHHHHHhhCCCEEEEChhh
Confidence 5433 24555555 444444444333
No 247
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.41 E-value=1e+02 Score=33.00 Aligned_cols=63 Identities=35% Similarity=0.441 Sum_probs=39.7
Q ss_pred HHHHHHHhCCCEeeecCCCCChHHHHHHHHh--cCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 006395 242 KVQWATMWGADTVMDLSTGRHIHETREWILR--NSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTI 319 (647)
Q Consensus 242 Kl~~A~~~GADtvMDLSTGgdi~~~R~~Il~--~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGVDf~TI 319 (647)
-+..|+++|||-|| |= .-+++++|+++-. ... +.|. ++-.||. | .++|++-|+-||||+.+
T Consensus 211 ea~eal~~gaDiI~-LD-nm~~e~vk~av~~~~~~~---~~v~----ieaSGGI----~----~~ni~~yA~tGvD~Is~ 273 (289)
T PRK07896 211 QLDEVLAEGAELVL-LD-NFPVWQTQEAVQRRDARA---PTVL----LESSGGL----T----LDTAAAYAETGVDYLAV 273 (289)
T ss_pred HHHHHHHcCCCEEE-eC-CCCHHHHHHHHHHHhccC---CCEE----EEEECCC----C----HHHHHHHHhcCCCEEEe
Confidence 34456899999998 32 4468888888732 111 2222 1222332 2 37888899999999976
Q ss_pred ec
Q 006395 320 HA 321 (647)
Q Consensus 320 Ha 321 (647)
=+
T Consensus 274 ga 275 (289)
T PRK07896 274 GA 275 (289)
T ss_pred Ch
Confidence 44
No 248
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.22 E-value=76 Score=33.67 Aligned_cols=69 Identities=29% Similarity=0.306 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhCCCEee-ecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEE
Q 006395 239 EVYKVQWATMWGADTVM-DLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYF 317 (647)
Q Consensus 239 EveKl~~A~~~GADtvM-DLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGVDf~ 317 (647)
.++-+..|+++|||.|| |=-+-.++.+..+.+.+... + ..+. ++-.||. | .+.|++-|+-||||+
T Consensus 191 ~leea~~a~~agaDiI~LDn~~~e~l~~~v~~l~~~~~-~-~~~~----leaSGGI----~----~~ni~~yA~tGvD~I 256 (278)
T PRK08385 191 SLEDALKAAKAGADIIMLDNMTPEEIREVIEALKREGL-R-ERVK----IEVSGGI----T----PENIEEYAKLDVDVI 256 (278)
T ss_pred CHHHHHHHHHcCcCEEEECCCCHHHHHHHHHHHHhcCc-C-CCEE----EEEECCC----C----HHHHHHHHHcCCCEE
Confidence 34556778899999995 54444455555554432210 0 1221 1222332 2 367888899999999
Q ss_pred EEec
Q 006395 318 TIHA 321 (647)
Q Consensus 318 TIHa 321 (647)
.+=+
T Consensus 257 s~ga 260 (278)
T PRK08385 257 SLGA 260 (278)
T ss_pred EeCh
Confidence 7644
No 249
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=27.93 E-value=2.3e+02 Score=29.21 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEecccc
Q 006395 298 SWEVFRDTLIEQAEQGVDYFTIHAGVL 324 (647)
Q Consensus 298 t~e~~~d~i~eQaeqGVDf~TIHaGv~ 324 (647)
+.+++.+....-.+.|||++++|.++.
T Consensus 167 ~~~~~~~~a~~l~~~G~d~i~v~nt~~ 193 (300)
T TIGR01037 167 NVTDITEIAKAAEEAGADGLTLINTLR 193 (300)
T ss_pred ChhhHHHHHHHHHHcCCCEEEEEccCC
Confidence 345666666655678999999998764
No 250
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=27.72 E-value=1.6e+02 Score=31.19 Aligned_cols=76 Identities=20% Similarity=0.163 Sum_probs=47.2
Q ss_pred ChHHHHHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcC----CCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHH
Q 006395 235 SIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNS----AVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQA 310 (647)
Q Consensus 235 ~ie~EveKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~~s----pvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQa 310 (647)
.+++=++.++.+.++|||.||=-+--.+.+++++..-+-. |+|+--+| +....++. .+-.
T Consensus 167 ~~~eAi~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~~~~---------~~~~~~~~-------~eL~ 230 (285)
T TIGR02320 167 GMEDALKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLVIVP---------TSYYTTPT-------DEFR 230 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEEEec---------CCCCCCCH-------HHHH
Confidence 5899999999999999999996533356666665443321 34542222 11122343 4446
Q ss_pred hcCCCEEEEecccccc
Q 006395 311 EQGVDYFTIHAGVLLR 326 (647)
Q Consensus 311 eqGVDf~TIHaGv~~~ 326 (647)
+.||..+++-....+.
T Consensus 231 ~lG~~~v~~~~~~~~a 246 (285)
T TIGR02320 231 DAGISVVIYANHLLRA 246 (285)
T ss_pred HcCCCEEEEhHHHHHH
Confidence 7899998775444333
No 251
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=27.34 E-value=1.4e+02 Score=28.62 Aligned_cols=70 Identities=16% Similarity=0.129 Sum_probs=47.6
Q ss_pred hHHHHHHHHhHh-----ceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHH
Q 006395 362 HWDEILDICNQY-----DVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQK 436 (647)
Q Consensus 362 ~FD~ileI~k~Y-----DVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~nv~l 436 (647)
.+++|+++.+++ .||||=|+ + |.. .|.+|+++++++|..+.||. |+.+-+ +
T Consensus 47 t~eel~~~I~~~~~~~~gVt~SGGE-l------------~~~---~l~~ll~~lk~~Gl~i~l~T-g~~~~~-~------ 102 (147)
T TIGR02826 47 TPEYLTKTLDKYRSLISCVLFLGGE-W------------NRE---ALLSLLKIFKEKGLKTCLYT-GLEPKD-I------ 102 (147)
T ss_pred CHHHHHHHHHHhCCCCCEEEEechh-c------------CHH---HHHHHHHHHHHCCCCEEEEC-CCCCHH-H------
Confidence 678899998887 38898887 2 333 45677778888999999997 776532 2
Q ss_pred HHHhcCCCCccccCccccc
Q 006395 437 QLEWCNEAPFYTLGPLTTD 455 (647)
Q Consensus 437 qk~lc~~APfYvLGPLvTD 455 (647)
..+++...=+.+.||-+-+
T Consensus 103 ~~~il~~iD~l~~g~y~~~ 121 (147)
T TIGR02826 103 PLELVQHLDYLKTGRWIHT 121 (147)
T ss_pred HHHHHHhCCEEEEChHHHH
Confidence 2333444456677775443
No 252
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=27.29 E-value=1.5e+02 Score=30.93 Aligned_cols=175 Identities=22% Similarity=0.230 Sum_probs=95.7
Q ss_pred CCCCCChHHHHHHHHHHHHhCCCE----eeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCcc--CCCCHHHHH
Q 006395 230 SAVASSIEEEVYKVQWATMWGADT----VMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIA--ENLSWEVFR 303 (647)
Q Consensus 230 S~~~~~ie~EveKl~~A~~~GADt----vMDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~--~dlt~e~~~ 303 (647)
|++...+.+|++++ .++|||. |||-.-=.||. +| -|+++++.+....+ ..|=.+.-.
T Consensus 12 saD~~~l~~el~~~---~~agad~iH~DVMDghFVPNiT-------------fG-p~~v~~l~~~t~~p~DvHLMV~~p~ 74 (220)
T COG0036 12 SADFARLGEELKAL---EAAGADLIHIDVMDGHFVPNIT-------------FG-PPVVKALRKITDLPLDVHLMVENPD 74 (220)
T ss_pred hCCHhHHHHHHHHH---HHcCCCEEEEeccCCCcCCCcc-------------cC-HHHHHHHhhcCCCceEEEEecCCHH
Confidence 56667778887765 4679997 58844333321 11 13333433311100 111122234
Q ss_pred HHHHHHHhcCCCEEEEecccccccccc------ccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeE
Q 006395 304 DTLIEQAEQGVDYFTIHAGVLLRYIPL------TAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVAL 377 (647)
Q Consensus 304 d~i~eQaeqGVDf~TIHaGv~~~~~~~------~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtl 377 (647)
..|+.-++.|.|++|+|+-. -.++.+ ..+-..|||= || =|-.|.|-.++.+-|+.|
T Consensus 75 ~~i~~fa~agad~It~H~E~-~~~~~r~i~~Ik~~G~kaGv~l----------------nP-~Tp~~~i~~~l~~vD~Vl 136 (220)
T COG0036 75 RYIEAFAKAGADIITFHAEA-TEHIHRTIQLIKELGVKAGLVL----------------NP-ATPLEALEPVLDDVDLVL 136 (220)
T ss_pred HHHHHHHHhCCCEEEEEecc-CcCHHHHHHHHHHcCCeEEEEE----------------CC-CCCHHHHHHHHhhCCEEE
Confidence 56777799999999999983 333332 2244444442 44 355677777888889887
Q ss_pred eccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCc
Q 006395 378 SIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGP 451 (647)
Q Consensus 378 SLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~nv~lqk~lc~~APfYvLGP 451 (647)
=+ ..=||--.=+-=.+.+.-+..+-++.+. .| +.+||==|=|-.+.|+ .-.+ -||=+||.|-
T Consensus 137 lM--sVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~---~~-~~~IeVDGGI~~~t~~----~~~~--AGad~~VaGS 198 (220)
T COG0036 137 LM--SVNPGFGGQKFIPEVLEKIRELRAMIDE---RL-DILIEVDGGINLETIK----QLAA--AGADVFVAGS 198 (220)
T ss_pred EE--eECCCCcccccCHHHHHHHHHHHHHhcc---cC-CeEEEEeCCcCHHHHH----HHHH--cCCCEEEEEE
Confidence 65 3556655544444444444444333333 55 7777766666544333 2111 4677777765
No 253
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=27.21 E-value=1.3e+02 Score=30.99 Aligned_cols=91 Identities=21% Similarity=0.163 Sum_probs=51.2
Q ss_pred CceeEeeccccCCCCCChHHHHHHHHHHHHhCCCEe-eecCCC--------CChHHHHHHHHhcCCCccccchhhhHHHH
Q 006395 219 FLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTV-MDLSTG--------RHIHETREWILRNSAVPVGTVPIYQALEK 289 (647)
Q Consensus 219 ~~tKVNANIGtS~~~~~ie~EveKl~~A~~~GADtv-MDLSTG--------gdi~~~R~~Il~~spvPvGTVPIYqA~~k 289 (647)
..+-|+++|.... .+..+|..++...++.|||.| ..||.- ++..+..+.|++... -.-.+|++= |
T Consensus 95 ~~~pvi~Si~~~~--~~~~~d~~~~a~~~~~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~-~~~~~Pv~v---K 168 (295)
T PF01180_consen 95 VDIPVIASINGDS--EEEIEDWAELAKRLEAGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVR-EAVDIPVFV---K 168 (295)
T ss_dssp -CEEEEEEE-TSS--SGHHHHHHHHHHHHHHHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHH-HHHSSEEEE---E
T ss_pred cceeEEEEeecCC--chhHHHHHHHHHHhcCcCCceEEEeeccCCCCccccccCHHHHHHHHHHHH-hccCCCEEE---E
Confidence 3445566664444 566777777777777999976 566641 122333333332111 011333321 2
Q ss_pred hcCccCCCCHHHHHHHHHHHHhcCCCEEE
Q 006395 290 VDGIAENLSWEVFRDTLIEQAEQGVDYFT 318 (647)
Q Consensus 290 ~~g~~~dlt~e~~~d~i~eQaeqGVDf~T 318 (647)
-.-+++....+..+.+.+++|+|.++
T Consensus 169 ---L~p~~~~~~~~~~~~~~~~~g~~gi~ 194 (295)
T PF01180_consen 169 ---LSPNFTDIEPFAIAAELAADGADGIV 194 (295)
T ss_dssp ---E-STSSCHHHHHHHHHHHTHTECEEE
T ss_pred ---ecCCCCchHHHHHHHHhhccceeEEE
Confidence 22456667778888888899999988
No 254
>PRK09061 D-glutamate deacylase; Validated
Probab=27.17 E-value=3.4e+02 Score=30.68 Aligned_cols=91 Identities=13% Similarity=0.102 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhcee
Q 006395 297 LSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVA 376 (647)
Q Consensus 297 lt~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVt 376 (647)
.+.++|+..++.-++.|..++ +|+--.-. ++ .--..+.++++++++++.++-
T Consensus 196 ~~~~eL~~l~~~A~~~g~~v~-~H~e~~~~------------~~---------------~~~e~~av~~~i~lA~~~G~r 247 (509)
T PRK09061 196 TGHKEYLELARLAARAGVPTY-THVRYLSN------------VD---------------PRSSVDAYQELIAAAAETGAH 247 (509)
T ss_pred CCHHHHHHHHHHHHHcCCEEE-EEecCccc------------CC---------------chhHHHHHHHHHHHHHHhCCC
Confidence 477888888888888888655 68842111 00 112356779999999999954
Q ss_pred EeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCC
Q 006395 377 LSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHI 425 (647)
Q Consensus 377 lSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHV 425 (647)
+.+.=--=.|. .+ ....-+++++|++.|+.|..|=.=|-
T Consensus 248 v~IsHlss~g~-------~~---~~~~le~I~~Ar~~Gi~Vt~e~~P~~ 286 (509)
T PRK09061 248 MHICHVNSTSL-------RD---IDRCLALVEKAQAQGLDVTTEAYPYG 286 (509)
T ss_pred EEEEeeccCCc-------cc---HHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 44331100011 12 23445789999999999999974444
No 255
>PRK08508 biotin synthase; Provisional
Probab=27.04 E-value=6.9e+02 Score=25.97 Aligned_cols=23 Identities=13% Similarity=0.021 Sum_probs=19.6
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEE
Q 006395 297 LSWEVFRDTLIEQAEQGVDYFTI 319 (647)
Q Consensus 297 lt~e~~~d~i~eQaeqGVDf~TI 319 (647)
+++|++.+.+++-.+.|+.-|.+
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~l 62 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCL 62 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE
Confidence 79999999999888889977665
No 256
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=26.74 E-value=4.5e+02 Score=26.37 Aligned_cols=152 Identities=18% Similarity=0.134 Sum_probs=80.9
Q ss_pred CCChHHHHHHHHHHHHhCCCEe---eecCCCCChHHHHHHHHhcCCCccccchhhhHHH-HhcCccCCCCHHHHHHHHHH
Q 006395 233 ASSIEEEVYKVQWATMWGADTV---MDLSTGRHIHETREWILRNSAVPVGTVPIYQALE-KVDGIAENLSWEVFRDTLIE 308 (647)
Q Consensus 233 ~~~ie~EveKl~~A~~~GADtv---MDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~-k~~g~~~dlt~e~~~d~i~e 308 (647)
..+.++-..+++.+ ..|||.| +|+....+..+.-..+++....-.+.+||-=.+. +..|.--..+.+..++.+.+
T Consensus 8 ~~~~~~~~~~~~~~-~~~aD~vElRlD~l~~~~~~~~~~~~~~~~~~~~~~~piI~T~R~~~eGG~~~~~~~~~~~ll~~ 86 (228)
T TIGR01093 8 APDLEEALATAEKI-CKGADIVELRVDLLKDPSSNNDVDALIEQLSQLRPDKPLIFTIRTISEGGKFPGNEEEYLEELKR 86 (228)
T ss_pred CCCHHHHHHHHHHh-ccCCCEEEEEechhcccCcHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCCHHHHHHHHHH
Confidence 34566666666666 7899997 6766443333322333332111113567544433 22233357888999998777
Q ss_pred H-HhcCCCEEEEecccccccccc-----ccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCC
Q 006395 309 Q-AEQGVDYFTIHAGVLLRYIPL-----TAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDG 382 (647)
Q Consensus 309 Q-aeqGVDf~TIHaGv~~~~~~~-----~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlSLGDG 382 (647)
- ...|+||+.|=.-...+.+.. ..++.-=|+|. |+-...|-.+..-++++-+++++ +|-
T Consensus 87 ~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S~----------H~f~~tp~~~~l~~~~~~~~~~g-----aDi 151 (228)
T TIGR01093 87 AADSPGPDFVDIELFLPDDAVKELINIAKKGGTKIIMSY----------HDFQKTPSWEEIVERLEKALSYG-----ADI 151 (228)
T ss_pred HHHhCCCCEEEEEccCCHHHHHHHHHHHHHCCCEEEEec----------cCCCCCCCHHHHHHHHHHHHHhC-----CCE
Confidence 6 367899999865433222221 12222223331 33355676766666666666653 344
Q ss_pred CCCCCccCCCcHHHHHHHHH
Q 006395 383 LRPGSIYDANDTAQFAELLT 402 (647)
Q Consensus 383 LRPG~i~DA~D~AQ~~EL~~ 402 (647)
.|= ..-+++.....+|..
T Consensus 152 vKi--a~~a~~~~D~~~ll~ 169 (228)
T TIGR01093 152 VKI--AVMANSKEDVLTLLE 169 (228)
T ss_pred EEE--EeccCCHHHHHHHHH
Confidence 442 223455555555553
No 257
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=26.70 E-value=52 Score=35.02 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEec
Q 006395 297 LSWEVFRDTLIEQAEQGVDYFTIHA 321 (647)
Q Consensus 297 lt~e~~~d~i~eQaeqGVDf~TIHa 321 (647)
++.+.+.+.|..-|.-+...+-+|-
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~Hl 39 (311)
T cd06570 15 IPVAVIKRQLDAMASVKLNVFHWHL 39 (311)
T ss_pred cCHHHHHHHHHHHHHhCCeEEEEEE
Confidence 6789999999999999999999996
No 258
>PF10515 APP_amyloid: beta-amyloid precursor protein C-terminus; InterPro: IPR019543 This is the amyloid, C-terminal, protein of the beta-Amyloid precursor protein (APP) which is a conserved and ubiquitous transmembrane glycoprotein strongly implicated in the pathogenesis of Alzheimer's disease but whose normal biological function is unknown. The C-terminal 100 residues are released and aggregate into amyloid deposits which are strongly implicated in the pathology of Alzheimer's disease plaque-formation. The domain is associated with IPR008154 from INTERPRO, further towards the N terminus. ; PDB: 2ROZ_A 3DXD_D 1X11_D 2LP1_A 2LOH_A 3MXC_L 3MXY_L 3DXC_B 3DXE_D 3L81_B ....
Probab=26.68 E-value=12 Score=31.20 Aligned_cols=18 Identities=17% Similarity=0.093 Sum_probs=14.8
Q ss_pred HHHHHHcCCcCchhhhHH
Q 006395 347 AKWCLAYHKENFAYEHWD 364 (647)
Q Consensus 347 a~Wml~~~~ENplY~~FD 364 (647)
..=|..|+=|||-|..||
T Consensus 35 ~~~mQ~nGYENPTYkyfE 52 (52)
T PF10515_consen 35 LSNMQNNGYENPTYKYFE 52 (52)
T ss_dssp HHHHHCTEEESCTCHHCC
T ss_pred HHHHHhcCCcCCceeccC
Confidence 345788999999999886
No 259
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=26.61 E-value=5.7e+02 Score=24.37 Aligned_cols=17 Identities=18% Similarity=0.161 Sum_probs=13.6
Q ss_pred HHHHHhcCCCEEEEecc
Q 006395 306 LIEQAEQGVDYFTIHAG 322 (647)
Q Consensus 306 i~eQaeqGVDf~TIHaG 322 (647)
+++-++.|+||+++|+-
T Consensus 70 ~~~~~~aGad~i~~h~~ 86 (202)
T cd04726 70 AEMAFKAGADIVTVLGA 86 (202)
T ss_pred HHHHHhcCCCEEEEEee
Confidence 45567889999999963
No 260
>PRK13308 ureC urease subunit alpha; Reviewed
Probab=26.58 E-value=1.8e+02 Score=34.17 Aligned_cols=120 Identities=24% Similarity=0.334 Sum_probs=77.4
Q ss_pred HHHHHhCCCEeeecCCCC----------ChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcC
Q 006395 244 QWATMWGADTVMDLSTGR----------HIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQG 313 (647)
Q Consensus 244 ~~A~~~GADtvMDLSTGg----------di~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqG 313 (647)
+.|+.-|.-||++.-|+. +|+.+.+. .+..++.+|-. .+ |... -.+.|++|.+.|
T Consensus 149 ~aALagGVTTVi~gg~gPt~p~~t~g~~~i~~~l~a-a~~~pvN~g~~------gk--G~~s------~~aeL~eli~aG 213 (569)
T PRK13308 149 DHALASGITTMLGGGLGPTVGIDSGGPFNTGRMLQA-AEAWPVNFGFL------GR--GNSS------KPAALIEQVEAG 213 (569)
T ss_pred HHHHcCCCcEEecCCcCCCCCCCCCCHHHHHHHHHH-HhcCCccEEEE------cC--Cccc------CHHHHHHHHHCC
Confidence 789999999999964443 24444432 33455555521 01 2111 135789999999
Q ss_pred CCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCc
Q 006395 314 VDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDAND 393 (647)
Q Consensus 314 VDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D 393 (647)
+..|.+|-. |- -+| ..++++|+++++||+.+.+ -.|..+
T Consensus 214 A~GfKi~ed--------------------------~g-----~t~--~~i~~aL~~A~~~dv~Vai--------Hadtln 252 (569)
T PRK13308 214 ACGLKIHED--------------------------WG-----AMP--AAIDTCLEVADEYDFQVQL--------HTDTLN 252 (569)
T ss_pred CCEEeecCC--------------------------CC-----CCH--HHHHHHHHHHHhcCCEEEE--------eCCCcC
Confidence 999999821 10 023 5899999999999999874 456667
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEE---eeC--CCCCC
Q 006395 394 TAQFAELLTQGELTRRAWDKDVQVM---NEG--PGHIP 426 (647)
Q Consensus 394 ~AQ~~EL~~LGEL~krA~e~gVQVM---IEG--PGHVP 426 (647)
++-|.|. ++.... |..+- +|| -||+|
T Consensus 253 e~g~~E~-t~~a~~------gr~iH~~H~egaggghap 283 (569)
T PRK13308 253 ESGFVED-TLAAIG------GRTIHMYHTEGAGGGHAP 283 (569)
T ss_pred cchHHHH-HHHHhc------CCeEEEEeccCCccCchh
Confidence 7777777 554443 44433 566 47988
No 261
>TIGR01048 lysA diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis.
Probab=26.48 E-value=8.3e+02 Score=26.28 Aligned_cols=28 Identities=11% Similarity=0.194 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHHHHh-cCCCEEEEeccc
Q 006395 296 NLSWEVFRDTLIEQAE-QGVDYFTIHAGV 323 (647)
Q Consensus 296 dlt~e~~~d~i~eQae-qGVDf~TIHaGv 323 (647)
-++.+++.+.++.-.+ .|+.+..||+-+
T Consensus 170 Gi~~~~~~~~~~~~~~~~~l~l~Glh~H~ 198 (417)
T TIGR01048 170 GIDVEEALEAYLYALQLPHLELVGIHCHI 198 (417)
T ss_pred CCCHHHHHHHHHHHHhCCCCCEEEEEEeC
Confidence 3566776666544333 468888888743
No 262
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=26.40 E-value=1.2e+02 Score=32.37 Aligned_cols=126 Identities=19% Similarity=0.140 Sum_probs=72.5
Q ss_pred ccCcccCccccccHHHHHHH-HHcCCcCchhhhHHHHHHHHhHhc-------------------------eeEeccCCCC
Q 006395 331 TAKRMTGIVSRGGSIHAKWC-LAYHKENFAYEHWDEILDICNQYD-------------------------VALSIGDGLR 384 (647)
Q Consensus 331 ~~~R~tgIVSRGGSi~a~Wm-l~~~~ENplY~~FD~ileI~k~YD-------------------------VtlSLGDGLR 384 (647)
...|+.|.===||+|+ +-+ +-.+. +.||+|++++++.| ++=|.|.-.+
T Consensus 121 ~~~Rv~Gt~iGGGTf~-GL~~LL~~~-----~~~~el~~lA~~G~~~~vDl~V~dIYg~~y~~~~L~~d~iASsfGkv~~ 194 (279)
T TIGR00555 121 NYERVGGTSLGGGTFL-GLGKLLTGI-----QTFDELLEMAQHGDRTNVDLLVGDIYGGDYSESGLDGSLTASSFGKVLS 194 (279)
T ss_pred cEEEEcCccccHHHHH-HHHHHHcCC-----CCHHHHHHHHHcCCCcccccccccccCCCCCCCCCCcceeeeccchhhc
Confidence 4579999866666666 655 33333 78999999999998 4444443332
Q ss_pred CCCccCCCcHHHHHHH-----HHHHHHHH-HHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCccccccCC
Q 006395 385 PGSIYDANDTAQFAEL-----LTQGELTR-RAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAP 458 (647)
Q Consensus 385 PG~i~DA~D~AQ~~EL-----~~LGEL~k-rA~e~gVQVMIEGPGHVPl~~I~~nv~lqk~lc~~APfYvLGPLvTDIAp 458 (647)
..--.+++.+.-.+=| .++|.|+. +|..+++.-++=.-| ||...+.-++...+..+ ||- ..=+-|
T Consensus 195 ~~~~~~~~~eDiAaSLl~mV~~nIg~lA~~~a~~~~~~~IvF~Gg--~L~~~~~l~~~~~~~~~---~~~----~~~ifp 265 (279)
T TIGR00555 195 KHLDQSFSPEDIAASLLGLIGNNIGQIAYLCALRYNIDRIVFIGS--FLRNNQLLMKVLSYATN---FWS----KKALFL 265 (279)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECC--cccCCHHHHHHHHHHHh---hcC----ceEEEE
Confidence 2000122222222211 26777776 677788877665544 23332323333222222 333 333678
Q ss_pred CchhHHHhHHHHH
Q 006395 459 GYDHITSAIGAAN 471 (647)
Q Consensus 459 GYDHItsAIGaA~ 471 (647)
-+.+-..|||||+
T Consensus 266 ~h~~y~gAlGAaL 278 (279)
T TIGR00555 266 EHEGYSGAIGALL 278 (279)
T ss_pred CCcchHHHhhhcc
Confidence 8999999999986
No 263
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=25.84 E-value=3.5e+02 Score=28.70 Aligned_cols=98 Identities=18% Similarity=0.112 Sum_probs=55.2
Q ss_pred CCCCHHHHHHHHHHHHhc-CCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCC--cCchhhhH----HHHH
Q 006395 295 ENLSWEVFRDTLIEQAEQ-GVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHK--ENFAYEHW----DEIL 367 (647)
Q Consensus 295 ~dlt~e~~~d~i~eQaeq-GVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~--ENplY~~F----D~il 367 (647)
...+.|.|...++.-.+. |+ .+++|+.=+...+.....+.-. ..-...|+..++- .+.+..|. |+-+
T Consensus 181 ~~~s~e~l~~~~~~A~~~~g~-~v~~H~~e~~~~~~~~~~~~~~-----~~~~~~~l~~~g~lg~~~~~~H~~~~~~~~~ 254 (401)
T TIGR02967 181 PTSSPEQLAAAGELAKEYPDV-YVQTHLSENKDEIAWVKELFPE-----AKDYLDVYDHYGLLGRRSVFAHCIHLSDEEC 254 (401)
T ss_pred CcCcHHHHHHHHHHHHhCCCC-eeEEEECCCchHHHHHHHHcCC-----CCcHHHHHHHCCCCCCCeEEEecccCCHHHH
Confidence 346677766666665566 88 5679997444433322111100 0012344444432 22233332 4578
Q ss_pred HHHhHhceeEe--------ccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEe
Q 006395 368 DICNQYDVALS--------IGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMN 419 (647)
Q Consensus 368 eI~k~YDVtlS--------LGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMI 419 (647)
+++++.++.++ ||+|+-| ++.++++||.|.+
T Consensus 255 ~~l~~~g~~v~~~P~~~~~~~~g~~~---------------------~~~~~~~Gv~v~l 293 (401)
T TIGR02967 255 QRLAETGAAIAHCPTSNLFLGSGLFN---------------------LKKALEHGVRVGL 293 (401)
T ss_pred HHHHHcCCeEEEChHHHHHhccCCCC---------------------HHHHHHCCCeEEE
Confidence 99999998775 4554332 4556889999988
No 264
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=25.43 E-value=7.7e+02 Score=25.52 Aligned_cols=25 Identities=12% Similarity=0.100 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeccc
Q 006395 299 WEVFRDTLIEQAEQGVDYFTIHAGV 323 (647)
Q Consensus 299 ~e~~~d~i~eQaeqGVDf~TIHaGv 323 (647)
.+++.+..+.-.+.|||.+++|..+
T Consensus 168 ~~~~~~~a~~l~~~G~d~i~~~nt~ 192 (301)
T PRK07259 168 VTDIVEIAKAAEEAGADGLSLINTL 192 (301)
T ss_pred chhHHHHHHHHHHcCCCEEEEEccc
Confidence 3566677776677899999997654
No 265
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=25.41 E-value=2.4e+02 Score=26.13 Aligned_cols=23 Identities=13% Similarity=0.109 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhcCCCEEEEecc
Q 006395 300 EVFRDTLIEQAEQGVDYFTIHAG 322 (647)
Q Consensus 300 e~~~d~i~eQaeqGVDf~TIHaG 322 (647)
+++.+...+-.+.||.+++|-.|
T Consensus 117 ~~~~~~a~~lk~~gi~i~~ig~g 139 (164)
T cd01482 117 DDVELPARVLRNLGVNVFAVGVK 139 (164)
T ss_pred chHHHHHHHHHHCCCEEEEEecC
Confidence 45555555556789999999775
No 266
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=25.34 E-value=2.4e+02 Score=28.72 Aligned_cols=82 Identities=16% Similarity=0.126 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHH---hHh-
Q 006395 298 SWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDIC---NQY- 373 (647)
Q Consensus 298 t~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~---k~Y- 373 (647)
+.+++.+.++.-.+.|+|++-||++--. .. ..|+ +..+++.++||+ |+.
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~-----~~------~~~~----------------~~~~~~~~~eiv~~vr~~~ 161 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPN-----VG------GGRQ----------------LGQDPEAVANLLKAVKAAV 161 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCC-----CC------CCcc----------------cccCHHHHHHHHHHHHHcc
Confidence 6678888887777779999999997321 00 0111 334455544444 333
Q ss_pred ceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEe
Q 006395 374 DVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMN 419 (647)
Q Consensus 374 DVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMI 419 (647)
|+.+++ .|||+- | ....-++++.+.++||..++
T Consensus 162 ~~pv~v--Kl~~~~-----~------~~~~~~~a~~l~~~Gad~i~ 194 (289)
T cd02810 162 DIPLLV--KLSPYF-----D------LEDIVELAKAAERAGADGLT 194 (289)
T ss_pred CCCEEE--EeCCCC-----C------HHHHHHHHHHHHHcCCCEEE
Confidence 544444 355541 2 12345677888899988776
No 267
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=25.11 E-value=1.8e+02 Score=30.50 Aligned_cols=29 Identities=31% Similarity=0.409 Sum_probs=24.1
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCEEEEecc
Q 006395 294 AENLSWEVFRDTLIEQAEQGVDYFTIHAG 322 (647)
Q Consensus 294 ~~dlt~e~~~d~i~eQaeqGVDf~TIHaG 322 (647)
-.+|++|++.+.|.+-.+.|+..+++.=|
T Consensus 34 ~~~l~~e~~~~ii~~~~~~g~~~v~~~GG 62 (358)
T TIGR02109 34 KAELTTEEWTDVLTQAAELGVLQLHFSGG 62 (358)
T ss_pred cCCCCHHHHHHHHHHHHhcCCcEEEEeCc
Confidence 36799999999998888889988888654
No 268
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=25.07 E-value=7.9e+02 Score=25.51 Aligned_cols=53 Identities=21% Similarity=0.343 Sum_probs=37.9
Q ss_pred CCChHHHHHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhc
Q 006395 233 ASSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQ 312 (647)
Q Consensus 233 ~~~ie~EveKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeq 312 (647)
..+.++|+++|++=+++|||-++ |=|+|++ +.|.+.++.-.+.
T Consensus 140 ~~~~~~~~~~L~~K~~aGA~f~i------------------------TQ~~fd~-------------~~~~~~~~~~~~~ 182 (272)
T TIGR00676 140 APNLEEDIENLKRKVDAGADYAI------------------------TQLFFDN-------------DDYYRFVDRCRAA 182 (272)
T ss_pred CCCHHHHHHHHHHHHHcCCCeEe------------------------eccccCH-------------HHHHHHHHHHHHc
Confidence 44678999999999999998766 4455554 4555555555566
Q ss_pred CCCEEEEeccc
Q 006395 313 GVDYFTIHAGV 323 (647)
Q Consensus 313 GVDf~TIHaGv 323 (647)
|++ +.|++||
T Consensus 183 gi~-~PIi~Gi 192 (272)
T TIGR00676 183 GID-VPIIPGI 192 (272)
T ss_pred CCC-CCEeccc
Confidence 887 4788885
No 269
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=25.07 E-value=1.7e+02 Score=30.97 Aligned_cols=63 Identities=33% Similarity=0.381 Sum_probs=40.8
Q ss_pred HHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEEe
Q 006395 241 YKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIH 320 (647)
Q Consensus 241 eKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGVDf~TIH 320 (647)
+-+..|.++|||-||= ..-.++.+++++-. .+ +.+|+.-. || +|. +.+.+-++-|||++.+=
T Consensus 200 eea~eA~~~gaD~I~L--D~~~~e~l~~~v~~-~~---~~i~leAs----GG----It~----~ni~~~a~tGvD~Isvg 261 (277)
T PRK05742 200 DELRQALAAGADIVML--DELSLDDMREAVRL-TA---GRAKLEAS----GG----INE----STLRVIAETGVDYISIG 261 (277)
T ss_pred HHHHHHHHcCCCEEEE--CCCCHHHHHHHHHH-hC---CCCcEEEE----CC----CCH----HHHHHHHHcCCCEEEEC
Confidence 3456688999999983 34567777776621 11 45665332 33 343 55667799999999875
Q ss_pred c
Q 006395 321 A 321 (647)
Q Consensus 321 a 321 (647)
+
T Consensus 262 ~ 262 (277)
T PRK05742 262 A 262 (277)
T ss_pred h
Confidence 4
No 270
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=25.02 E-value=2.6e+02 Score=29.89 Aligned_cols=26 Identities=38% Similarity=0.473 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEecc
Q 006395 297 LSWEVFRDTLIEQAEQGVDYFTIHAG 322 (647)
Q Consensus 297 lt~e~~~d~i~eQaeqGVDf~TIHaG 322 (647)
-|.++..+.+..-.+.|||++|||+.
T Consensus 148 ~t~~~~~~~~~~l~~aG~d~i~vh~R 173 (333)
T PRK11815 148 DSYEFLCDFVDTVAEAGCDTFIVHAR 173 (333)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 35667777777777889999999963
No 271
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=24.99 E-value=1.3e+02 Score=32.01 Aligned_cols=78 Identities=22% Similarity=0.293 Sum_probs=54.8
Q ss_pred hhhHHHHHHH----HhHhceeEeccCCCCCCCccCCCcHHHHHH-------------------------HHHHHHHHHHH
Q 006395 360 YEHWDEILDI----CNQYDVALSIGDGLRPGSIYDANDTAQFAE-------------------------LLTQGELTRRA 410 (647)
Q Consensus 360 Y~~FD~ileI----~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~E-------------------------L~~LGEL~krA 410 (647)
..||++|+.. |.++.+.+-++=|+-|++|-|-.++ |+.| ...+-+..+-|
T Consensus 45 ~~h~~rl~~~E~~Ra~~~Gl~~~vavGvHPr~iP~e~~~-~l~~L~~~l~~e~VvAiGEiGLe~~t~~E~evf~~QL~LA 123 (254)
T COG1099 45 LDHFRRLLGVEPERAEKAGLKLKVAVGVHPRAIPPELEE-VLEELEELLSNEDVVAIGEIGLEEATDEEKEVFREQLELA 123 (254)
T ss_pred HHHHHHHHccchhhHHhhCceeeEEeccCCCCCCchHHH-HHHHHHhhcccCCeeEeeecccccCCHHHHHHHHHHHHHH
Confidence 4678888766 8889999999999999998776333 4444 44556677889
Q ss_pred HhcCCeEEeeCCCCCCCCchHHHHHHHHHhcC
Q 006395 411 WDKDVQVMNEGPGHIPMHKIPENMQKQLEWCN 442 (647)
Q Consensus 411 ~e~gVQVMIEGPGHVPl~~I~~nv~lqk~lc~ 442 (647)
++.||.||| |-|=..=++-..+..++|.
T Consensus 124 ~e~dvPviV----HTPr~nK~e~t~~ildi~~ 151 (254)
T COG1099 124 RELDVPVIV----HTPRRNKKEATSKILDILI 151 (254)
T ss_pred HHcCCcEEE----eCCCCcchhHHHHHHHHHH
Confidence 999999999 6664433334445555565
No 272
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=24.71 E-value=86 Score=33.79 Aligned_cols=74 Identities=18% Similarity=0.240 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCCCEEEEeccc----cccccccccCcccCccccccHHHHHHHHHcCCcCchh--hhHHHHHHHHhHhce
Q 006395 302 FRDTLIEQAEQGVDYFTIHAGV----LLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAY--EHWDEILDICNQYDV 375 (647)
Q Consensus 302 ~~d~i~eQaeqGVDf~TIHaGv----~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY--~~FD~ileI~k~YDV 375 (647)
++-+++.-.+.|...+.++-|. +-++++++...+-++.+.||+++ -..+-+|+- +.++.+++.+++|++
T Consensus 19 i~~~v~~~~~~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs~L-----gtsR~~~~~~~~~~~~~~~~l~~~~I 93 (338)
T cd00363 19 IRGVVRSAIAEGLEVYGIYEGYAGLVEGDIKELDWESVSDIINRGGTII-----GSARCKEFRTEEGRAKAAENLKKHGI 93 (338)
T ss_pred HHHHHHHHHHCCCEEEEEecChHHhCCCCeEeCCHHHhcchhhCCCeec-----ccCCCCccCCHHHHHHHHHHHHHhCC
Confidence 3444455556788999999876 45667777888999999999965 445656543 468999999999987
Q ss_pred e--Eecc
Q 006395 376 A--LSIG 380 (647)
Q Consensus 376 t--lSLG 380 (647)
. +-+|
T Consensus 94 ~~Lv~IG 100 (338)
T cd00363 94 DALVVIG 100 (338)
T ss_pred CEEEEeC
Confidence 4 5555
No 273
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=24.60 E-value=82 Score=30.77 Aligned_cols=78 Identities=10% Similarity=0.024 Sum_probs=40.4
Q ss_pred HHHHHHHHHhCCCEee-ecCCCCChHHHHHHHHhcC--CC--ccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCC
Q 006395 240 VYKVQWATMWGADTVM-DLSTGRHIHETREWILRNS--AV--PVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGV 314 (647)
Q Consensus 240 veKl~~A~~~GADtvM-DLSTGgdi~~~R~~Il~~s--pv--PvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGV 314 (647)
++.++.++++|||.|| .-+.-.|.+.+++..-+-. .+ ++. ++..+.+.+ ++ .+.+.....+.+++-.+.|+
T Consensus 85 ~e~~~~~~~~Gad~vvigs~~l~dp~~~~~i~~~~g~~~i~~sid-~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~ga 160 (234)
T cd04732 85 LEDIERLLDLGVSRVIIGTAAVKNPELVKELLKEYGGERIVVGLD-AKDGKVATK-GW--LETSEVSLEELAKRFEELGV 160 (234)
T ss_pred HHHHHHHHHcCCCEEEECchHHhChHHHHHHHHHcCCceEEEEEE-eeCCEEEEC-CC--eeecCCCHHHHHHHHHHcCC
Confidence 5667777789999987 3333445444444332211 11 111 111111111 11 12233345566666678899
Q ss_pred CEEEEec
Q 006395 315 DYFTIHA 321 (647)
Q Consensus 315 Df~TIHa 321 (647)
|.+++|.
T Consensus 161 ~~iii~~ 167 (234)
T cd04732 161 KAIIYTD 167 (234)
T ss_pred CEEEEEe
Confidence 9999984
No 274
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=24.50 E-value=72 Score=38.36 Aligned_cols=79 Identities=16% Similarity=0.164 Sum_probs=62.8
Q ss_pred cCccCCCCHHHHHHHHHHHHhcCCCEEEEeccc----cccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHH
Q 006395 291 DGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGV----LLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEI 366 (647)
Q Consensus 291 ~g~~~dlt~e~~~d~i~eQaeqGVDf~TIHaGv----~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~i 366 (647)
||..--|+. -++.+++.-...|...+.||-|. .-+.+++...-+-++.++|||+| -..+.+| .+.++.+
T Consensus 398 GG~apGmNa-airavv~~a~~~g~~v~gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt~L-----GT~R~~~-~~~~~~i 470 (762)
T cd00764 398 GAPAAGMNA-AVRSAVRYGLAHGHRPYAIYDGFEGLAKGQIVELGWIDVGGWTGRGGSEL-----GTKRTLP-KKDLETI 470 (762)
T ss_pred CCCchhHHH-HHHHHHHHHHHCCCEEEEEecCHHHhcCCCcccCCHHHHHHHHhCCcccc-----cccCCCc-HHHHHHH
Confidence 677777776 45777777778999999999986 34566677788999999999974 4566666 5899999
Q ss_pred HHHHhHhcee
Q 006395 367 LDICNQYDVA 376 (647)
Q Consensus 367 leI~k~YDVt 376 (647)
.+.+++|++-
T Consensus 471 ~~~l~~~~Id 480 (762)
T cd00764 471 AYNFQKYGID 480 (762)
T ss_pred HHHHHHcCCC
Confidence 9999999874
No 275
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=24.47 E-value=2.4e+02 Score=28.76 Aligned_cols=83 Identities=17% Similarity=0.184 Sum_probs=60.6
Q ss_pred eeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCC-eEEe-eCC---CCCCCCchHHHHHHHHHhcCCCCcccc
Q 006395 375 VALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDV-QVMN-EGP---GHIPMHKIPENMQKQLEWCNEAPFYTL 449 (647)
Q Consensus 375 VtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gV-QVMI-EGP---GHVPl~~I~~nv~lqk~lc~~APfYvL 449 (647)
|++|+|..-+.|... ++.+. -..||.+-|+..|| .+.. -.| -.++.+++...+....+-+. |=.|+
T Consensus 44 ~~lT~Ge~g~~~~~~------~l~~~-R~~E~~~a~~~LGv~~~~~l~~~~~~~~~~~~~~~~~L~~ii~~~~--P~~V~ 114 (237)
T COG2120 44 VCLTLGEAGENGGEL------ELGAV-RRAEARAAARVLGVRETIFLGFPDTGADADPEEITGALVAIIRRLR--PDVVF 114 (237)
T ss_pred EEccCCcccccCCcc------chHHH-HHHHHHHHHHhcCCCcceecCCCccccccChHHHHHHHHHHHHHhC--CCEEE
Confidence 678999988888766 44443 46899999999999 3333 234 45778888887777777666 66666
Q ss_pred CccccccCCCchhHHHh
Q 006395 450 GPLTTDIAPGYDHITSA 466 (647)
Q Consensus 450 GPLvTDIApGYDHItsA 466 (647)
=|-.-|..++.||+...
T Consensus 115 t~~~~d~~~HpDH~~~~ 131 (237)
T COG2120 115 TPYPDDGYGHPDHRATH 131 (237)
T ss_pred ecCCCCCCCCCChHHHH
Confidence 66666668999999865
No 276
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=24.40 E-value=81 Score=33.84 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEeccc
Q 006395 296 NLSWEVFRDTLIEQAEQGVDYFTIHAGV 323 (647)
Q Consensus 296 dlt~e~~~d~i~eQaeqGVDf~TIHaGv 323 (647)
.++.++..+.+..-.+.||||+.||.|.
T Consensus 223 G~~~~e~~~i~~~l~~~gvD~i~vs~g~ 250 (337)
T PRK13523 223 GLTVQDYVQYAKWMKEQGVDLIDVSSGA 250 (337)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 4788999998888888999999999994
No 277
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=24.39 E-value=7.5e+02 Score=25.00 Aligned_cols=109 Identities=13% Similarity=0.144 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHH-h--CCCEeeecCCCCChHHHHHHHHh---------cCCCccccchhhhHHHHhcCccC-----CCCH
Q 006395 237 EEEVYKVQWATM-W--GADTVMDLSTGRHIHETREWILR---------NSAVPVGTVPIYQALEKVDGIAE-----NLSW 299 (647)
Q Consensus 237 e~EveKl~~A~~-~--GADtvMDLSTGgdi~~~R~~Il~---------~spvPvGTVPIYqA~~k~~g~~~-----dlt~ 299 (647)
+++++.++...+ . +..-.+|--.+-++++.++.+-+ .-|+|......|+.+.+.-+.+. -.+.
T Consensus 113 ~~d~~~v~~vr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~ipia~dE~~~~~ 192 (265)
T cd03315 113 ARDVAVVAALREAVGDDAELRVDANRGWTPKQAIRALRALEDLGLDYVEQPLPADDLEGRAALARATDTPIMADESAFTP 192 (265)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHHHHHHHhcCCCEEECCCCcccHHHHHHHHhhCCCCEEECCCCCCH
Confidence 555555444333 2 34556676666677766654322 22344444555555554422221 1244
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEec
Q 006395 300 EVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSI 379 (647)
Q Consensus 300 e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlSL 379 (647)
+++.+.|+ ..++|++.+-.. |+-|| +.+-++.++|+++++.+.+
T Consensus 193 ~~~~~~i~---~~~~d~v~~k~~-----------~~GGi----------------------~~~~~~~~~A~~~gi~~~~ 236 (265)
T cd03315 193 HDAFRELA---LGAADAVNIKTA-----------KTGGL----------------------TKAQRVLAVAEALGLPVMV 236 (265)
T ss_pred HHHHHHHH---hCCCCEEEEecc-----------cccCH----------------------HHHHHHHHHHHHcCCcEEe
Confidence 55555443 345777655432 22222 5666777778888877777
Q ss_pred cC
Q 006395 380 GD 381 (647)
Q Consensus 380 GD 381 (647)
|.
T Consensus 237 ~~ 238 (265)
T cd03315 237 GS 238 (265)
T ss_pred cC
Confidence 63
No 278
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=24.26 E-value=77 Score=32.26 Aligned_cols=35 Identities=34% Similarity=0.509 Sum_probs=27.7
Q ss_pred HHHHHHHHhHhceeEecc-CCCCCCCccCCCcHHHH
Q 006395 363 WDEILDICNQYDVALSIG-DGLRPGSIYDANDTAQF 397 (647)
Q Consensus 363 FD~ileI~k~YDVtlSLG-DGLRPG~i~DA~D~AQ~ 397 (647)
..+++..|+++++.|+|| |+-+|+.+.+-...+++
T Consensus 175 ~~~~~~~~~e~G~~~~i~tDaH~~~~lg~~~~~~~~ 210 (237)
T COG1387 175 NSEILRLARELGVKLAIGTDAHRPGDLGDMYFGVKI 210 (237)
T ss_pred hHHHHHHHHHhCCeEEeecCcCChhhcccchHHHHH
Confidence 457999999999999998 67777777776665543
No 279
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=24.25 E-value=2.6e+02 Score=29.06 Aligned_cols=19 Identities=16% Similarity=-0.034 Sum_probs=13.9
Q ss_pred HHHHHHHhCCCEeeecCCC
Q 006395 242 KVQWATMWGADTVMDLSTG 260 (647)
Q Consensus 242 Kl~~A~~~GADtvMDLSTG 260 (647)
-+..+++.|.-||+|....
T Consensus 106 ~~~~~l~~GvTtv~d~~~~ 124 (411)
T cd01298 106 ALAEMIRSGTTTFADMYFF 124 (411)
T ss_pred HHHHHHhcCccEEECcccc
Confidence 3555678999999987543
No 280
>PF07503 zf-HYPF: HypF finger; InterPro: IPR011125 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Proteins of the HypF family are involved in the maturation and regulation of hydrogenase []. In the N terminus they appear to have two zinc finger domains that are similar to those found in the DnaJ chaperone []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A.
Probab=24.19 E-value=32 Score=26.28 Aligned_cols=21 Identities=38% Similarity=0.928 Sum_probs=11.3
Q ss_pred ChHHHHhhhhccCCCCCCCCCCcccCCCCCc
Q 006395 545 DPMTAMSFHDETLPSEGAKVAHFCSMCGPKF 575 (647)
Q Consensus 545 DPe~Ar~~~~~~~p~~~~k~~~~CSMCGp~f 575 (647)
||.. |+||-+. -.|+-|||.+
T Consensus 11 ~p~~-RR~~~~~---------isC~~CGPr~ 31 (35)
T PF07503_consen 11 DPSN-RRFHYQF---------ISCTNCGPRY 31 (35)
T ss_dssp STTS-TTTT-TT-----------BTTCC-SC
T ss_pred CCCC-CcccCcC---------ccCCCCCCCE
Confidence 4443 5665554 3699999965
No 281
>PRK03202 6-phosphofructokinase; Provisional
Probab=24.18 E-value=85 Score=33.74 Aligned_cols=74 Identities=20% Similarity=0.318 Sum_probs=54.6
Q ss_pred HHHHHHHHhcCCCEEEEeccc----cccccccccCcccCccccccHHHHHHHHHcCCcCchh--hhHHHHHHHHhHhcee
Q 006395 303 RDTLIEQAEQGVDYFTIHAGV----LLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAY--EHWDEILDICNQYDVA 376 (647)
Q Consensus 303 ~d~i~eQaeqGVDf~TIHaGv----~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY--~~FD~ileI~k~YDVt 376 (647)
+-+++.-.+.|...+.+|-|. +-+.++++...+-++.+.||++ +...+-+|+- +.++.+++.|++|++.
T Consensus 21 ~~~~~~~~~~g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs~-----LgtsR~~~~~~~~~~~~~~~~l~~~~Id 95 (320)
T PRK03202 21 RAVVRTAISEGLEVYGIYDGYAGLLEGDIVKLDLKSVSDIINRGGTI-----LGSARFPEFKDEEGRAKAIENLKKLGID 95 (320)
T ss_pred HHHHHHHHHCCCeEEEEecChhhhcCCCEEECCHHHHhhHHhCCCcc-----cccCCCCCcCCHHHHHHHHHHHHHcCCC
Confidence 344555556799999998886 3455567778899999999997 4555666644 5799999999999764
Q ss_pred --EeccC
Q 006395 377 --LSIGD 381 (647)
Q Consensus 377 --lSLGD 381 (647)
+-+|.
T Consensus 96 ~Li~IGG 102 (320)
T PRK03202 96 ALVVIGG 102 (320)
T ss_pred EEEEeCC
Confidence 55654
No 282
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=23.98 E-value=8.8e+02 Score=25.69 Aligned_cols=31 Identities=23% Similarity=0.038 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecccccc
Q 006395 296 NLSWEVFRDTLIEQAEQGVDYFTIHAGVLLR 326 (647)
Q Consensus 296 dlt~e~~~d~i~eQaeqGVDf~TIHaGv~~~ 326 (647)
-++.|++++.+++-.+.|+.-+.+=.|...+
T Consensus 34 ~l~~eeI~~~a~~~~~~G~~ei~l~~G~~p~ 64 (322)
T TIGR03550 34 LLSPEEVLEILRKGAAAGCTEALFTFGEKPE 64 (322)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEecCCCcc
Confidence 6999999999999999999887666666443
No 283
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=23.76 E-value=4.1e+02 Score=31.58 Aligned_cols=108 Identities=18% Similarity=0.284 Sum_probs=61.9
Q ss_pred ccCCCCHHHHHHHHHHH-------HhcCCCEEEEecc---ccccccccccCcccCccccccHHHHHHHHHcCCcCchhhh
Q 006395 293 IAENLSWEVFRDTLIEQ-------AEQGVDYFTIHAG---VLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEH 362 (647)
Q Consensus 293 ~~~dlt~e~~~d~i~eQ-------aeqGVDf~TIHaG---v~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~ 362 (647)
.+..||.+++-++|+.- .+.|.|.+-||+| +.-+.+--..++.+. .-|||+.-. -.|+.
T Consensus 537 ~p~~mt~~eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD--~yGGslenR-------~r~~~-- 605 (765)
T PRK08255 537 VPREMTRADMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTD--EYGGSLENR-------LRYPL-- 605 (765)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCC--CCCCCHHHH-------hHHHH--
Confidence 45789888887766543 4579999999998 444444433444444 358997432 12333
Q ss_pred HHHHHHHHhH---hc----eeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEE-eeCCCC
Q 006395 363 WDEILDICNQ---YD----VALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVM-NEGPGH 424 (647)
Q Consensus 363 FD~ileI~k~---YD----VtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVM-IEGPGH 424 (647)
+|++..|+ -| |-||..|.+..| .+ +.|. -+|+++..+.||..+ |-++++
T Consensus 606 --eiv~~ir~~~~~~~~v~~ri~~~~~~~~g-----~~---~~~~---~~~~~~l~~~g~d~i~vs~g~~ 662 (765)
T PRK08255 606 --EVFRAVRAVWPAEKPMSVRISAHDWVEGG-----NT---PDDA---VEIARAFKAAGADLIDVSSGQV 662 (765)
T ss_pred --HHHHHHHHhcCCCCeeEEEEccccccCCC-----CC---HHHH---HHHHHHHHhcCCcEEEeCCCCC
Confidence 45555554 24 345555544322 11 2232 367777778899844 544444
No 284
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=23.53 E-value=1.6e+02 Score=31.30 Aligned_cols=121 Identities=11% Similarity=0.098 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeccccc--cccc---cccCccc-Cc---c------ccccHH-HHHHHHHcCC---cCc
Q 006395 298 SWEVFRDTLIEQAEQGVDYFTIHAGVLL--RYIP---LTAKRMT-GI---V------SRGGSI-HAKWCLAYHK---ENF 358 (647)
Q Consensus 298 t~e~~~d~i~eQaeqGVDf~TIHaGv~~--~~~~---~~~~R~t-gI---V------SRGGSi-~a~Wml~~~~---ENp 358 (647)
+.+++.+.+.+..++|..-|-|+.|..- +-++ ...+.+- ++ | |.--++ +++.+...+- |-|
T Consensus 141 ~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~d~~~v~air~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iEeP 220 (355)
T cd03321 141 GAKLATERAVTAAEEGFHAVKTKIGYPTADEDLAVVRSIRQAVGDGVGLMVDYNQSLTVPEAIERGQALDQEGLTWIEEP 220 (355)
T ss_pred hHHHHHHHHHHHHHhhhHHHhhhcCCCChHhHHHHHHHHHHhhCCCCEEEEeCCCCcCHHHHHHHHHHHHcCCCCEEECC
Confidence 3566777777777788888888876421 1111 1111110 00 0 111111 1233332222 555
Q ss_pred hh-hhHHHHHHHHhHhceeEeccCCCCC---------CCccCC--CcHHHHHHHHHHHHHHHHHHhcCCeEE
Q 006395 359 AY-EHWDEILDICNQYDVALSIGDGLRP---------GSIYDA--NDTAQFAELLTQGELTRRAWDKDVQVM 418 (647)
Q Consensus 359 lY-~~FD~ileI~k~YDVtlSLGDGLRP---------G~i~DA--~D~AQ~~EL~~LGEL~krA~e~gVQVM 418 (647)
+- ..+|.+-++.++.+|-+.+|..+.- ....|. -|...+.-+...-++++.|+++|+.+|
T Consensus 221 ~~~~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ia~~A~~~gi~~~ 292 (355)
T cd03321 221 TLQHDYEGHARIASALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRASALAEQAGIPMS 292 (355)
T ss_pred CCCcCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHHHHHHHHcCCeec
Confidence 53 4688888999999999999987731 001111 122333334444478899999999987
No 285
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=23.49 E-value=6.5e+02 Score=24.01 Aligned_cols=67 Identities=15% Similarity=0.202 Sum_probs=38.8
Q ss_pred HHHHHHHhcCCeEEeeCC--------CCCCCCchHHHHHHHHHhcCCCCccccCccccccCCCchhHHHhHHHHHhhhcc
Q 006395 405 ELTRRAWDKDVQVMNEGP--------GHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALG 476 (647)
Q Consensus 405 EL~krA~e~gVQVMIEGP--------GHVPl~~I~~nv~lqk~lc~~APfYvLGPLvTDIApGYDHItsAIGaA~aa~~G 476 (647)
+-+++|.+.|+..+.=|| |..|..- -..++.-++.+.+.|.|++|=+.. ++|..+ ..+|
T Consensus 115 ~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~v~a~GGI~~------~~i~~~------~~~G 181 (212)
T PRK00043 115 EEAAAALAAGADYVGVGPIFPTPTKKDAKAPQG-LEGLREIRAAVGDIPIVAIGGITP------ENAPEV------LEAG 181 (212)
T ss_pred HHHHHHhHcCCCEEEECCccCCCCCCCCCCCCC-HHHHHHHHHhcCCCCEEEECCcCH------HHHHHH------HHcC
Confidence 345778888998886442 1122111 234555556666689999997633 444433 3457
Q ss_pred cceeeecC
Q 006395 477 TALLCYVT 484 (647)
Q Consensus 477 ad~LCYVT 484 (647)
|+.+|..+
T Consensus 182 a~gv~~gs 189 (212)
T PRK00043 182 ADGVAVVS 189 (212)
T ss_pred CCEEEEeH
Confidence 77776543
No 286
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=23.41 E-value=3.5e+02 Score=25.40 Aligned_cols=105 Identities=12% Similarity=0.084 Sum_probs=55.2
Q ss_pred HHHHHHHhCCCEeeecCCCCC-------hHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCC
Q 006395 242 KVQWATMWGADTVMDLSTGRH-------IHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGV 314 (647)
Q Consensus 242 Kl~~A~~~GADtvMDLSTGgd-------i~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGV 314 (647)
=+..+++.|.-||+|.++... +..+.+.+-+.+.+- .+..+.+.... ....+...+.+.+.|.+....|+
T Consensus 40 ~~~~~~~~Gvttv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ 116 (275)
T cd01292 40 ALEALLAGGVTTVVDMGSTPPPTTTKAAIEAVAEAARASAGIR--VVLGLGIPGVP-AAVDEDAEALLLELLRRGLELGA 116 (275)
T ss_pred HHHHHHhcCceEEEeeEeecCccccchHHHHHHHHHHHhcCee--eEEeccCCCCc-cccchhHHHHHHHHHHHHHhcCC
Confidence 356689999999999876543 455565554432111 11111111000 00011122334444444333466
Q ss_pred CEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEec
Q 006395 315 DYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSI 379 (647)
Q Consensus 315 Df~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YDVtlSL 379 (647)
..+.+|...... ++--+.|.++++.+++||+.+.+
T Consensus 117 ~gi~~~~~~~~~------------------------------~~~~~~~~~~~~~a~~~~~~i~~ 151 (275)
T cd01292 117 VGLKLAGPYTAT------------------------------GLSDESLRRVLEEARKLGLPVVI 151 (275)
T ss_pred eeEeeCCCCCCC------------------------------CCCcHHHHHHHHHHHHcCCeEEE
Confidence 666666532110 03356889999999999987764
No 287
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=23.03 E-value=83 Score=33.84 Aligned_cols=72 Identities=25% Similarity=0.370 Sum_probs=52.2
Q ss_pred HHHHHHH-hcCCCEEEEeccc----ccccccc-ccCcccCccccccHHHHHHHHHcCCcCchh---hhHHHHHHHHhHhc
Q 006395 304 DTLIEQA-EQGVDYFTIHAGV----LLRYIPL-TAKRMTGIVSRGGSIHAKWCLAYHKENFAY---EHWDEILDICNQYD 374 (647)
Q Consensus 304 d~i~eQa-eqGVDf~TIHaGv----~~~~~~~-~~~R~tgIVSRGGSi~a~Wml~~~~ENplY---~~FD~ileI~k~YD 374 (647)
-+++.-. ..|+..+.+|-|. ..+++++ +...+-++..+||++ +...+.+|+- +++.++++.+++++
T Consensus 20 ~~v~~a~~~~g~~v~g~~~G~~GL~~~~~~~l~~~~~v~~~~~~GGt~-----LgtsR~~~~~~~~~~~~~~~~~l~~~~ 94 (324)
T TIGR02483 20 GVVRRAIAEYGWEVIGIRDGWRGLLEGDTVPLLDLEDVRGILPRGGTI-----LGSSRTNPFKYEEDGDDKIVANLKELG 94 (324)
T ss_pred HHHHHHHHcCCceEEEEccCHHHhCCCCeEecCCHHHHHHHHhCCCcc-----ccCCCCCccccCHHHHHHHHHHHHHcC
Confidence 3334333 3499999999886 4455666 677889999999996 4556666653 68999999999998
Q ss_pred ee--Eecc
Q 006395 375 VA--LSIG 380 (647)
Q Consensus 375 Vt--lSLG 380 (647)
+. +-+|
T Consensus 95 Id~LivIG 102 (324)
T TIGR02483 95 LDALIAIG 102 (324)
T ss_pred CCEEEEEC
Confidence 74 4444
No 288
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=23.00 E-value=5.2e+02 Score=28.74 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=22.0
Q ss_pred HHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcC-CCc
Q 006395 240 VYKVQWATMWGADTVMDLSTGRHIHETREWILRNS-AVP 277 (647)
Q Consensus 240 veKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~~s-pvP 277 (647)
.+.++.|.++|+.+|+ |..---...-|++=+||. .+|
T Consensus 149 ~~li~RA~~aG~~alv-lTvD~p~~g~R~~d~r~~~~~p 186 (367)
T TIGR02708 149 RDIMDRVKADGAKAIV-LTADATVGGNREVDVRNGFVFP 186 (367)
T ss_pred HHHHHHHHHcCCCEEE-EecCCCCCCcchhhhhcCCCCC
Confidence 4668889999999987 222222223366666664 344
No 289
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=22.91 E-value=2.2e+02 Score=30.69 Aligned_cols=24 Identities=13% Similarity=0.123 Sum_probs=19.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEE
Q 006395 295 ENLSWEVFRDTLIEQAEQGVDYFT 318 (647)
Q Consensus 295 ~dlt~e~~~d~i~eQaeqGVDf~T 318 (647)
..|+.|++.+.+.+-.+.||.=+-
T Consensus 101 ~~Ls~eEI~~~a~~~~~~Gv~~i~ 124 (366)
T TIGR02351 101 KKLNEEEIEREIEAIKKSGFKEIL 124 (366)
T ss_pred CcCCHHHHHHHHHHHHhCCCCEEE
Confidence 458999999999999999866443
No 290
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=22.73 E-value=2e+02 Score=30.54 Aligned_cols=98 Identities=16% Similarity=0.144 Sum_probs=65.6
Q ss_pred ceeEeeccccCCCCCChHHHHHHHHHHHHhCCCE---eeecC--CCCChHHHHHHHHhcCCCccccchhhhHHHHhcCcc
Q 006395 220 LVKVNANIGNSAVASSIEEEVYKVQWATMWGADT---VMDLS--TGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIA 294 (647)
Q Consensus 220 ~tKVNANIGtS~~~~~ie~EveKl~~A~~~GADt---vMDLS--TGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~ 294 (647)
.|||=.=||=..-....+.-+.-+++|++.|||- ||+++ -.||.+.+++.|-+-..+--+-+|+ |+-=..
T Consensus 66 ~vkv~tVigFP~G~~~t~~K~~Ea~~Ai~~GAdEiD~Vinig~lk~g~~~~v~~ei~~v~~~~~~~~~l-----KVIlEt 140 (257)
T PRK05283 66 EIRIATVTNFPHGNDDIDIALAETRAAIAYGADEVDVVFPYRALMAGNEQVGFELVKACKEACAANVLL-----KVIIET 140 (257)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEeeeccHHHHhCCcHHHHHHHHHHHHHHhCCCceE-----EEEEec
Confidence 4676666776666777888888899999999964 56654 3468888887775433221101111 221122
Q ss_pred CCCCHHH-HHHHHHHHHhcCCCEEEEecc
Q 006395 295 ENLSWEV-FRDTLIEQAEQGVDYFTIHAG 322 (647)
Q Consensus 295 ~dlt~e~-~~d~i~eQaeqGVDf~TIHaG 322 (647)
-.||.++ +....+--++.|+||+=-=.|
T Consensus 141 ~~L~~ee~i~~a~~~a~~aGADFVKTSTG 169 (257)
T PRK05283 141 GELKDEALIRKASEIAIKAGADFIKTSTG 169 (257)
T ss_pred cccCCHHHHHHHHHHHHHhCCCEEEcCCC
Confidence 4688885 888999999999999855444
No 291
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=22.72 E-value=4e+02 Score=27.10 Aligned_cols=78 Identities=15% Similarity=0.003 Sum_probs=40.6
Q ss_pred HHHHHHHHhCCCEeeecCCC--CChHHHHHHHHhcCC--CccccchhhhHH--------HHhcCccCCCCHHHHHHHHHH
Q 006395 241 YKVQWATMWGADTVMDLSTG--RHIHETREWILRNSA--VPVGTVPIYQAL--------EKVDGIAENLSWEVFRDTLIE 308 (647)
Q Consensus 241 eKl~~A~~~GADtvMDLSTG--gdi~~~R~~Il~~sp--vPvGTVPIYqA~--------~k~~g~~~dlt~e~~~d~i~e 308 (647)
+.++.++..|||.|+ +.|. .|.+.++++ .+..+ -.+=.+.+|+-- .+..|-.. -+.++..+.+.+
T Consensus 87 ~d~~~~~~~Ga~~vi-vgt~~~~~p~~~~~~-~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~-~~~~~~~~~~~~ 163 (254)
T TIGR00735 87 EDVDKLLRAGADKVS-INTAAVKNPELIYEL-ADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRE-STGLDAVEWAKE 163 (254)
T ss_pred HHHHHHHHcCCCEEE-EChhHhhChHHHHHH-HHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcc-cCCCCHHHHHHH
Confidence 344555667999875 4433 466656553 33221 112233333210 01112111 234455666777
Q ss_pred HHhcCCCEEEEec
Q 006395 309 QAEQGVDYFTIHA 321 (647)
Q Consensus 309 QaeqGVDf~TIHa 321 (647)
-.+.|+|++.+|.
T Consensus 164 l~~~G~~~iivt~ 176 (254)
T TIGR00735 164 VEKLGAGEILLTS 176 (254)
T ss_pred HHHcCCCEEEEeC
Confidence 7899999999996
No 292
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=22.64 E-value=2.2e+02 Score=28.46 Aligned_cols=160 Identities=18% Similarity=0.171 Sum_probs=91.0
Q ss_pred CCCHH-HHHHHHHHHHhcCCCEEEEeccccccccccccC---cccCcccc--ccHHHHHHHHHcCCcCchhhhHHHHHHH
Q 006395 296 NLSWE-VFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAK---RMTGIVSR--GGSIHAKWCLAYHKENFAYEHWDEILDI 369 (647)
Q Consensus 296 dlt~e-~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~---R~tgIVSR--GGSi~a~Wml~~~~ENplY~~FD~ileI 369 (647)
++|.. ++...+++..+-|++-+.++.|......+...+ ++.=||+= |++... ....+-- -..-++.++.
T Consensus 14 ~~~~~~~~~~~~~~a~~~~~~av~v~p~~~~~~~~~~~~~~~~~~~vi~fp~g~~~~~----~k~~~~~-~~~ve~A~~~ 88 (236)
T PF01791_consen 14 PMTGEEDIKKLCREAIEYGFDAVCVTPGYVKPAAELLAGSGVKVGLVIGFPFGTSTTE----PKGYDQI-VAEVEEAIRL 88 (236)
T ss_dssp THHHHHHHHHHHHHHHHHTSSEEEEEGGGHHHHHHHSTTSTSEEEEEESTTTSSSTHH----HHTCEEE-HHHHHHHHHT
T ss_pred CCCchhhHHHHHHHHHHhCCCEEEECHHHHHHHHHHhhccccccceEEEeCCCCCccc----cccccch-HHHHHHHHHc
Confidence 56666 999999999999999999999988777765443 44444431 222111 1100000 1222333333
Q ss_pred -HhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccc
Q 006395 370 -CNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYT 448 (647)
Q Consensus 370 -~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~nv~lqk~lc~~APfYv 448 (647)
+.+-|+++.+|- + .+.+ .-..+..+.++++.|+++|+.||+|+ .|
T Consensus 89 GAd~vd~vi~~~~-~-----~~~~---~~~~~~~i~~v~~~~~~~gl~vIlE~---~l---------------------- 134 (236)
T PF01791_consen 89 GADEVDVVINYGA-L-----GSGN---EDEVIEEIAAVVEECHKYGLKVILEP---YL---------------------- 134 (236)
T ss_dssp T-SEEEEEEEHHH-H-----HTTH---HHHHHHHHHHHHHHHHTSEEEEEEEE---CE----------------------
T ss_pred CCceeeeeccccc-c-----cccc---HHHHHHHHHHHHHHHhcCCcEEEEEE---ec----------------------
Confidence 456788888853 1 1122 33444556678888889999999993 12
Q ss_pred cCccccccCCCchhHHHhHHHHHhhhcccceeeecCchhhcCCCChhHHHH
Q 006395 449 LGPLTTDIAPGYDHITSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKA 499 (647)
Q Consensus 449 LGPLvTDIApGYDHItsAIGaA~aa~~Gad~LCYVTPaEHLgLP~~eDVre 499 (647)
.|+-+.|=. --|=|..|. -+++-+||||+=--||+. .-.+.+||+.
T Consensus 135 ~~~~~~~~~-~~~~I~~a~--ria~e~GaD~vKt~tg~~--~~~t~~~~~~ 180 (236)
T PF01791_consen 135 RGEEVADEK-KPDLIARAA--RIAAELGADFVKTSTGKP--VGATPEDVEL 180 (236)
T ss_dssp CHHHBSSTT-HHHHHHHHH--HHHHHTT-SEEEEE-SSS--SCSHHHHHHH
T ss_pred Cchhhcccc-cHHHHHHHH--HHHHHhCCCEEEecCCcc--ccccHHHHHH
Confidence 111111111 112344443 345669999999999966 5566666653
No 293
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=22.60 E-value=86 Score=33.77 Aligned_cols=58 Identities=21% Similarity=0.205 Sum_probs=39.3
Q ss_pred HHHHHHHHHhCCCEeeec----------------CCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHH
Q 006395 240 VYKVQWATMWGADTVMDL----------------STGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFR 303 (647)
Q Consensus 240 veKl~~A~~~GADtvMDL----------------STGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~ 303 (647)
++.++.|.++||-+||=| ++-.||.+||+.+ .+| |---+ | ..++
T Consensus 18 ~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~~V----~iP-----VIGi~-K----------~~~~ 77 (283)
T cd04727 18 AEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMDAV----SIP-----VMAKV-R----------IGHF 77 (283)
T ss_pred HHHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHHHHHHHhC----CCC-----eEEee-e----------hhHH
Confidence 578999999999999985 3445666666543 344 32111 1 2236
Q ss_pred HHHHHHHhcCCCEE
Q 006395 304 DTLIEQAEQGVDYF 317 (647)
Q Consensus 304 d~i~eQaeqGVDf~ 317 (647)
..+.+-.+.|||++
T Consensus 78 ~Ea~~L~eaGvDiI 91 (283)
T cd04727 78 VEAQILEALGVDMI 91 (283)
T ss_pred HHHHHHHHcCCCEE
Confidence 66777789999998
No 294
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=22.58 E-value=63 Score=34.59 Aligned_cols=26 Identities=12% Similarity=0.033 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEec
Q 006395 296 NLSWEVFRDTLIEQAEQGVDYFTIHA 321 (647)
Q Consensus 296 dlt~e~~~d~i~eQaeqGVDf~TIHa 321 (647)
-++.+.+.+.|..-|.-+...+-+|-
T Consensus 14 f~~~~~ik~~Id~ma~~K~N~lhlHl 39 (357)
T cd06563 14 FFPVDEVKRFIDLMALYKLNVFHWHL 39 (357)
T ss_pred CcCHHHHHHHHHHHHHhccceEEEee
Confidence 36789999999999999999999996
No 295
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=22.53 E-value=68 Score=37.12 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=20.1
Q ss_pred HHHHHHHHHhcCCeEEee--CCCCCC
Q 006395 403 QGELTRRAWDKDVQVMNE--GPGHIP 426 (647)
Q Consensus 403 LGEL~krA~e~gVQVMIE--GPGHVP 426 (647)
..|+++-|+.+||.||.| +|||.=
T Consensus 252 v~evV~yarlRGIRVlpEfD~PgHt~ 277 (542)
T KOG2499|consen 252 VSEVVEYARLRGIRVLPEFDTPGHTG 277 (542)
T ss_pred HHHHHHHHHhccceeeecccCCcccc
Confidence 356788899999999988 799973
No 296
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=22.52 E-value=2.5e+02 Score=29.83 Aligned_cols=90 Identities=20% Similarity=0.182 Sum_probs=59.8
Q ss_pred hceeEeccCCCCCCCcc-CCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCc--hHHHHHHHHHhcCCCC----
Q 006395 373 YDVALSIGDGLRPGSIY-DANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHK--IPENMQKQLEWCNEAP---- 445 (647)
Q Consensus 373 YDVtlSLGDGLRPG~i~-DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~--I~~nv~lqk~lc~~AP---- 445 (647)
-+|.||+|-.-= +.+. ...++.+|..-. .++.++-.=.||..=||||+ +-++ +...++.-|.|-...|
T Consensus 68 ~kViiS~GG~~g-~~~~~~~~~~~~~~~a~--~~~i~~y~~dgiDfDiE~~~--~~d~~~~~~~~~al~~Lq~~~p~l~v 142 (294)
T cd06543 68 GDVIVSFGGASG-TPLATSCTSADQLAAAY--QKVIDAYGLTHLDFDIEGGA--LTDTAAIDRRAQALALLQKEYPDLKI 142 (294)
T ss_pred CeEEEEecCCCC-CccccCcccHHHHHHHH--HHHHHHhCCCeEEEeccCCc--cccchhHHHHHHHHHHHHHHCCCcEE
Confidence 589999995321 2222 567888887655 45777777789999999998 5554 4555555555555545
Q ss_pred ccccCccccccC-CCchhHHHhH
Q 006395 446 FYTLGPLTTDIA-PGYDHITSAI 467 (647)
Q Consensus 446 fYvLGPLvTDIA-pGYDHItsAI 467 (647)
-|+|+-+++-.. .||+-+..|.
T Consensus 143 s~Tlp~~p~gl~~~g~~~l~~a~ 165 (294)
T cd06543 143 SFTLPVLPTGLTPDGLNVLEAAA 165 (294)
T ss_pred EEecCCCCCCCChhHHHHHHHHH
Confidence 367776677666 6777776664
No 297
>PF06368 Met_asp_mut_E: Methylaspartate mutase E chain (MutE); InterPro: IPR006396 Glutamate mutase (methylaspartate mutase) catalyses the reversible interconversion of L-glutamate and L-threo-3-methylaspartate, the first step in the pathway of glutamate fermentation []. Catalysis is initiated using the cobalamin cofactor. The E subunit is the catalytic subunit (MutE) []. ; GO: 0016866 intramolecular transferase activity, 0031419 cobalamin binding, 0019670 anaerobic glutamate catabolic process; PDB: 1CB7_D 1I9C_B 1CCW_D.
Probab=22.46 E-value=1.2e+02 Score=34.57 Aligned_cols=178 Identities=24% Similarity=0.335 Sum_probs=89.7
Q ss_pred HHHHcCCcCch------hhhHHHHHHHHhHhceeEe---cc---CCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCe
Q 006395 349 WCLAYHKENFA------YEHWDEILDICNQYDVALS---IG---DGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQ 416 (647)
Q Consensus 349 Wml~~~~ENpl------Y~~FD~ileI~k~YDVtlS---LG---DGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQ 416 (647)
||+-..|.=|| +++=|+||-...+..|.+- .| -.|=|=||.=| -|+-|- --|.++||.
T Consensus 136 YnlPY~k~vpLe~si~~Wqy~drl~g~y~e~Gv~inrE~FGpLtgtLvPPsisia---v~ilE~-------Lla~eqGVk 205 (441)
T PF06368_consen 136 YNLPYSKNVPLEKSIRDWQYVDRLCGYYEENGVEINREPFGPLTGTLVPPSISIA---VSILEA-------LLAAEQGVK 205 (441)
T ss_dssp TTTTT-SS--HHHHHHHHHHHHHHHHHHHHTT---EEE--TTTTSSS--HHHHHH---HHHHHH-------HHHHHTT--
T ss_pred eccccCCCCCHHHHHHHHHHHHHHHHHHHhcCCccccccCCCCCcCccCcHHHHH---HHHHHH-------HHHHHcCCe
Confidence 55555555554 3444666666666667663 23 33444444322 233332 257889998
Q ss_pred EEeeC---CCCCCCCchHHHHHHHHHhcCC-CC------------cc-ccCccccccCCCchhHHHhHHHHHhhhcccce
Q 006395 417 VMNEG---PGHIPMHKIPENMQKQLEWCNE-AP------------FY-TLGPLTTDIAPGYDHITSAIGAANIGALGTAL 479 (647)
Q Consensus 417 VMIEG---PGHVPl~~I~~nv~lqk~lc~~-AP------------fY-vLGPLvTDIApGYDHItsAIGaA~aa~~Gad~ 479 (647)
-+-=| -||+ ...|+ -+.--++||.+ .| || -.|+.+.|-+-.|-=|. -|+++|+..||+=
T Consensus 206 siSv~Y~Q~gn~-~QDia-Ai~aLr~L~~eyL~~~g~~dv~i~tV~hqwMG~FP~d~~~A~~li~--~~a~~A~l~gA~k 281 (441)
T PF06368_consen 206 SISVGYAQQGNL-IQDIA-AIRALRELAAEYLPKYGYKDVEITTVFHQWMGGFPQDEAKAFGLIS--WGAATAALAGATK 281 (441)
T ss_dssp EEEEEEE--S-H-HHHHH-HHHHHHHHHHHHHHHTT--S-EEEEEEE---S---SSHHHHHHHHH--HHHHHHHHHT-SE
T ss_pred EEEecccccCCh-HHHHH-HHHHHHHHHHHHHHhcCCCCeEEEEEEeeecCCCCCChhhhHhHHH--HHHHHHHHhCCCE
Confidence 77666 4553 23333 34444444443 23 33 25899999888776554 5899999999999
Q ss_pred eeecCchhhcCCCChhHHHHHHHHHHHHHhHhhhhcCCcc----hhhHHHHHHHHHhhcChHHHHhhc
Q 006395 480 LCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPL----AQTWDDALSKARFEFRWMDQFALS 543 (647)
Q Consensus 480 LCYVTPaEHLgLP~~eDVreGViA~kIAAHaaDlaKg~p~----A~~rD~~mS~AR~~~dWe~Qf~La 543 (647)
+=-=||.|-+|.|++|.=.+|+-++|-+ .+++++.+- +.+.+.++=++--.-=-+.-|+|.
T Consensus 282 vIvKT~~EA~gIPT~eaN~~~l~~t~~~---~~~l~~q~~~~~~~~~~E~~~i~~E~~~ild~Vlelg 346 (441)
T PF06368_consen 282 VIVKTPHEASGIPTKEANAAGLRATKQV---LNMLRDQRLPNSEALEEEKEIIKAEVRAILDAVLELG 346 (441)
T ss_dssp EE---TTTTTSS--HHHHHHHHHHHHHH---HHHTTT------HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEcCHHHHcCCCCHHHHHHHHHHHHHH---HHHhccCCCCCccchhhHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999988888776654 456655332 222333332322222345777777
No 298
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=22.45 E-value=73 Score=38.31 Aligned_cols=117 Identities=18% Similarity=0.137 Sum_probs=79.9
Q ss_pred cCccCCCCHHHHHHHHHHHHhcCCCEEEEecccc---c---cccccccCcccCccccccHHHHHHHHHcCCcCchh--hh
Q 006395 291 DGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVL---L---RYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAY--EH 362 (647)
Q Consensus 291 ~g~~~dlt~e~~~d~i~eQaeqGVDf~TIHaGv~---~---~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY--~~ 362 (647)
||+.--|+. -++.+++.-...|...+.||-|.. . +..+++..-+-+|-++||++|- ..+-+|+. +.
T Consensus 12 GGdapGmNa-aIravvr~a~~~g~~V~gi~~Gy~GL~~g~~~i~~l~~~~V~~i~~~GGT~LG-----TsR~~~f~~~e~ 85 (762)
T cd00764 12 GGDAQGMNA-AVRAVVRMGIYVGAKVFFVYEGYEGLVKGGDYIKQAEWESVSNWLQEGGTIIG-----SARCKEFREREG 85 (762)
T ss_pred CCCchhHhH-HHHHHHHHHHHCCCEEEEEecCHHHHhCCCCCceeCCHHHHHHHHhCCCCccc-----CCCCCcccCHHH
Confidence 444444443 345566666678999999998762 2 3445666788999999999764 45666653 47
Q ss_pred HHHHHHHHhHhcee--Eec-cCCCCCCCccCCCcHHH---------HHHHHHHHHHHHHHHhcCCeEEeeC
Q 006395 363 WDEILDICNQYDVA--LSI-GDGLRPGSIYDANDTAQ---------FAELLTQGELTRRAWDKDVQVMNEG 421 (647)
Q Consensus 363 FD~ileI~k~YDVt--lSL-GDGLRPG~i~DA~D~AQ---------~~EL~~LGEL~krA~e~gVQVMIEG 421 (647)
+..+++.+++|++. +-+ || |+.+.|+ ++||...|+|++.+.+.+-.+-|=|
T Consensus 86 ~~~a~~~L~~~~Id~LvvIGGd--------gSl~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVG 148 (762)
T cd00764 86 RLQAAYNLIQRGITNLCVIGGD--------GSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVG 148 (762)
T ss_pred HHHHHHHHHHcCCCEEEEeCCc--------hHHHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEE
Confidence 88999999999874 333 44 3444443 4789999999999988865544444
No 299
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.43 E-value=1.6e+02 Score=31.40 Aligned_cols=68 Identities=29% Similarity=0.360 Sum_probs=41.5
Q ss_pred HHHHHHHHHhCCCEeeecCCCCChHHHHHHHH--hcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEE
Q 006395 240 VYKVQWATMWGADTVMDLSTGRHIHETREWIL--RNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYF 317 (647)
Q Consensus 240 veKl~~A~~~GADtvMDLSTGgdi~~~R~~Il--~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQaeqGVDf~ 317 (647)
++-+..|.++|||-|| |- .-+++++|+++- ++. -+.+|+. -.||. | .+.|.+-++-|||++
T Consensus 206 leea~eA~~~GaD~I~-LD-n~~~e~l~~av~~~~~~---~~~i~le----AsGGI----t----~~ni~~ya~tGvD~I 268 (288)
T PRK07428 206 LEQVQEALEYGADIIM-LD-NMPVDLMQQAVQLIRQQ---NPRVKIE----ASGNI----T----LETIRAVAETGVDYI 268 (288)
T ss_pred HHHHHHHHHcCCCEEE-EC-CCCHHHHHHHHHHHHhc---CCCeEEE----EECCC----C----HHHHHHHHHcCCCEE
Confidence 4556678899999996 32 345666666653 211 1234431 12332 3 366777799999999
Q ss_pred EEecccc
Q 006395 318 TIHAGVL 324 (647)
Q Consensus 318 TIHaGv~ 324 (647)
.+=+-++
T Consensus 269 svgsl~~ 275 (288)
T PRK07428 269 SSSAPIT 275 (288)
T ss_pred EEchhhh
Confidence 8766443
No 300
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=22.37 E-value=2.9e+02 Score=29.58 Aligned_cols=124 Identities=12% Similarity=-0.037 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEecccc---c---cccccccCccc---C-ccccccHHH-------HHHHHHcC---CcC
Q 006395 298 SWEVFRDTLIEQAEQGVDYFTIHAGVL---L---RYIPLTAKRMT---G-IVSRGGSIH-------AKWCLAYH---KEN 357 (647)
Q Consensus 298 t~e~~~d~i~eQaeqGVDf~TIHaGv~---~---~~~~~~~~R~t---g-IVSRGGSi~-------a~Wml~~~---~EN 357 (647)
+.+++.+.+++..++|.+.|-||.|.. . +.+....+.+- . .|==.+++- ++.|...+ =|-
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik~~~~~~~~~di~~i~~vR~~~G~~~~l~vDan~~~~~~~A~~~~~~l~~~~l~~iEe 222 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLHPWGPGVVRRDLKACLAVREAVGPDMRLMHDGAHWYSRADALRLGRALEELGFFWYED 222 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCchhHHHHHHHHHHHHHHhCCCCeEEEECCCCcCHHHHHHHHHHhhhcCCCeEeC
Confidence 788999999999999999999997632 1 11221111110 0 111112221 12222222 255
Q ss_pred chh-hhHHHHHHHHhHhceeEeccCCCC--CCCc-----cCCCcH-----HHHHHHHHHHHHHHHHHhcCCeEEeeC
Q 006395 358 FAY-EHWDEILDICNQYDVALSIGDGLR--PGSI-----YDANDT-----AQFAELLTQGELTRRAWDKDVQVMNEG 421 (647)
Q Consensus 358 plY-~~FD~ileI~k~YDVtlSLGDGLR--PG~i-----~DA~D~-----AQ~~EL~~LGEL~krA~e~gVQVMIEG 421 (647)
|+. ..++.+-++.++.++-+.+|..+. +... .++-|- ..+.-|-..-+++..|.++||.+|+-+
T Consensus 223 P~~~~d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~~ia~~a~~~gi~~~~h~ 299 (368)
T cd03329 223 PLREASISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGATDFLRADVNLVGGITGAMKTAHLAEAFGLDVELHG 299 (368)
T ss_pred CCCchhHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEEEEC
Confidence 664 357888899888999999988763 1111 112222 222334444578889999999999843
No 301
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=22.29 E-value=4.6e+02 Score=23.68 Aligned_cols=72 Identities=22% Similarity=0.218 Sum_probs=40.3
Q ss_pred hHHHHHHHHhHhc-eeEecc--CCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCC---CCchHHHHH
Q 006395 362 HWDEILDICNQYD-VALSIG--DGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIP---MHKIPENMQ 435 (647)
Q Consensus 362 ~FD~ileI~k~YD-VtlSLG--DGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVP---l~~I~~nv~ 435 (647)
++++.+.-. +.| |+|.+| |.++ | .+..++.+ .+-+|+++++++|.+|++=++-.-| -..++...+
T Consensus 55 ~l~~~~~~~-~pd~v~i~~G~ND~~~-~-----~~~~~~~~--~l~~li~~~~~~~~~vil~~~~~~~~~~~~~~~~~~~ 125 (177)
T cd01822 55 RLPALLAQH-KPDLVILELGGNDGLR-G-----IPPDQTRA--NLRQMIETAQARGAPVLLVGMQAPPNYGPRYTRRFAA 125 (177)
T ss_pred HHHHHHHhc-CCCEEEEeccCccccc-C-----CCHHHHHH--HHHHHHHHHHHCCCeEEEEecCCCCccchHHHHHHHH
Confidence 455554432 455 667777 2221 1 23445543 4678888999999999988752111 112444455
Q ss_pred HHHHhcC
Q 006395 436 KQLEWCN 442 (647)
Q Consensus 436 lqk~lc~ 442 (647)
..+++|.
T Consensus 126 ~~~~~a~ 132 (177)
T cd01822 126 IYPELAE 132 (177)
T ss_pred HHHHHHH
Confidence 5556663
No 302
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=22.15 E-value=3.3e+02 Score=31.08 Aligned_cols=178 Identities=14% Similarity=0.132 Sum_probs=98.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHh-
Q 006395 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQY- 373 (647)
Q Consensus 295 ~dlt~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~Y- 373 (647)
..|+.|++.+.++.-.+.|+.=+.|..|......+ .+++-++++.++++
T Consensus 113 ~~Ls~EEI~~ea~~~~~~G~~~i~LvsGe~p~~~~------------------------------~eyi~e~i~~I~~~~ 162 (469)
T PRK09613 113 KKLTQEEIREEVKALEDMGHKRLALVAGEDPPNCD------------------------------IEYILESIKTIYSTK 162 (469)
T ss_pred eECCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCC------------------------------HHHHHHHHHHHHHhc
Confidence 45899999999999999999999988885533111 33444444445543
Q ss_pred -------ceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeE----------------EeeCCCCCCCCch
Q 006395 374 -------DVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQV----------------MNEGPGHIPMHKI 430 (647)
Q Consensus 374 -------DVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQV----------------MIEGPGHVPl~~I 430 (647)
.|++++|. .+..|+.+|...| |.. --.||.|-+-..+
T Consensus 163 ~~~g~i~~v~inig~----------lt~eey~~LkeaG----------v~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl 222 (469)
T PRK09613 163 HGNGEIRRVNVNIAP----------TTVENYKKLKEAG----------IGTYQLFQETYHKPTYEKMHPSGPKSDYDWRL 222 (469)
T ss_pred cccCcceeeEEEeec----------CCHHHHHHHHHcC----------CCEEEeccccCCHHHHHhcCCCCCCCCHHHHH
Confidence 47888773 6777888886544 322 1246666665555
Q ss_pred HHHHHHHH----HhcCCCCccccCccccccCCCchhHHHhHHHH-Hhhhcc--cceee--ecCchhhc------CCCChh
Q 006395 431 PENMQKQL----EWCNEAPFYTLGPLTTDIAPGYDHITSAIGAA-NIGALG--TALLC--YVTPKEHL------GLPNRD 495 (647)
Q Consensus 431 ~~nv~lqk----~lc~~APfYvLGPLvTDIApGYDHItsAIGaA-~aa~~G--ad~LC--YVTPaEHL------gLP~~e 495 (647)
++-=..++ .+|-|+ ++=||.- =||.+..+.=+. +-..+| .+.+= -.-|++.- ..-+.+
T Consensus 223 ~t~~rA~~aGi~~Vg~G~-L~GLge~------~~E~~~l~~hl~~L~~~~gvgp~tIsvprl~P~~Gtpl~~~~~~vsd~ 295 (469)
T PRK09613 223 TAMDRAMEAGIDDVGIGV-LFGLYDY------KFEVLGLLMHAEHLEERFGVGPHTISVPRLRPADGSDLENFPYLVSDE 295 (469)
T ss_pred HHHHHHHHcCCCeeCeEE-EEcCCCC------HHHHHHHHHHHHHHHHhhCCCCccccccceecCCCCCcccCCCCCCHH
Confidence 43222222 144444 1122221 124443321110 111123 22110 12333332 123677
Q ss_pred HHHHHHHHHHHHHhHhhhh-cCCcchhhHHHHHHH
Q 006395 496 DVKAGVIAYKIAAHAADLA-KGHPLAQTWDDALSK 529 (647)
Q Consensus 496 DVreGViA~kIAAHaaDla-Kg~p~A~~rD~~mS~ 529 (647)
+...=|-++||+---+.|. -++..+.-||..|.-
T Consensus 296 e~lriiA~~RL~~P~~~I~lStRE~~~~r~~~~~~ 330 (469)
T PRK09613 296 DFKKIVAILRLAVPYTGMILSTRESAELRREVLEL 330 (469)
T ss_pred HHHHHHHHHHHHCCCCCceeecCCCHHHHHHHHhh
Confidence 8899999999998866654 356677788876543
No 303
>TIGR01224 hutI imidazolonepropionase. This enzyme catalyzes the third step in histidine degradation.
Probab=22.13 E-value=5.2e+02 Score=26.99 Aligned_cols=107 Identities=23% Similarity=0.191 Sum_probs=57.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccc--cccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhH
Q 006395 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLL--RYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQ 372 (647)
Q Consensus 295 ~dlt~e~~~d~i~eQaeqGVDf~TIHaGv~~--~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~ 372 (647)
..++.+.|.+.++.-.+-|+.+ ++||+=.. ..++... + .|.++- -+.-|+ =|+.++.+++
T Consensus 192 ~~~~~~~~~~~~~~A~~~g~~v-~~H~~e~~~~~~~~~~~-~-~g~~~~---~H~~~~------------~~~~l~~la~ 253 (377)
T TIGR01224 192 GVFSVEQSRRILQAAQEAGLPV-KLHAEELSNLGGAELAA-K-LGAVSA---DHLEHA------------SDAGIKALAE 253 (377)
T ss_pred CCcCHHHHHHHHHHHHHCCCCE-EEEecCCCCCCHHHHHH-H-cCCCcc---HHHhcC------------CHHHHHHHHh
Confidence 3566788888888888889865 79996321 1222111 1 122210 022221 1578999999
Q ss_pred hceeEeccCC--CCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeC---CCCCCCCchHHHH
Q 006395 373 YDVALSIGDG--LRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEG---PGHIPMHKIPENM 434 (647)
Q Consensus 373 YDVtlSLGDG--LRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEG---PGHVPl~~I~~nv 434 (647)
+++.+++==. +.-| +.. .=.++.+++||.|.+=- ||.-|...+...+
T Consensus 254 ~g~~~~~~P~~~~~l~---~~~------------~p~~~l~~~Gv~v~lgTD~~~~~~~~~~~~~~~ 305 (377)
T TIGR01224 254 AGTVAVLLPGTTFYLR---ETY------------PPARQLIDYGVPVALATDLNPGSSPTLSMQLIM 305 (377)
T ss_pred cCCEEEECchHHHhcC---CcC------------ccHHHHHHCCCCEEEECCCCCCCChhHHHHHHH
Confidence 9999874211 0000 000 01456678999988743 4444443333333
No 304
>PLN02795 allantoinase
Probab=22.11 E-value=1.6e+02 Score=33.07 Aligned_cols=56 Identities=18% Similarity=0.082 Sum_probs=30.5
Q ss_pred hhHHHHHHHHhHhceeEecc--C--------CCCCC--CccC-CCcHHHHHHHHHHHHHHHHHHhcCCe
Q 006395 361 EHWDEILDICNQYDVALSIG--D--------GLRPG--SIYD-ANDTAQFAELLTQGELTRRAWDKDVQ 416 (647)
Q Consensus 361 ~~FD~ileI~k~YDVtlSLG--D--------GLRPG--~i~D-A~D~AQ~~EL~~LGEL~krA~e~gVQ 416 (647)
..+.++++.+++||+.+.+= | .+..| .... ..-+..++|...+.++...|++.|.|
T Consensus 212 ~~l~~~~~~a~~~g~~v~iH~E~~~l~~~~~~~~~~~~~~~~~~~~rP~~aE~~ai~~~~~la~~~~~~ 280 (505)
T PLN02795 212 THIKAALPVLAKYGRPLLVHAEVVSPVESDSRLDADPRSYSTYLKSRPPSWEQEAIRQLLEVAKDTRPG 280 (505)
T ss_pred HHHHHHHHHHHHhCCEEEEecCChhHhhhhhhhhcCCcChhHhcccCCHHHHHHHHHHHHHHHHHhhhc
Confidence 56788888888888776541 0 00000 0000 01134566777777777777776433
No 305
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=21.94 E-value=8.2e+02 Score=24.60 Aligned_cols=66 Identities=11% Similarity=0.098 Sum_probs=50.2
Q ss_pred hhHHHHHHHHhHh-ceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCC
Q 006395 361 EHWDEILDICNQY-DVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPM 427 (647)
Q Consensus 361 ~~FD~ileI~k~Y-DVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl 427 (647)
+.++++.+.+++| .+.+|+--.+ ++...+.+....-..+..+-...+.|.+.|+..++=-||+.+-
T Consensus 45 ~~~~~l~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~ 111 (279)
T cd00019 45 ERAEKFKAIAEEGPSICLSVHAPY-LINLASPDKEKREKSIERLKDEIERCEELGIRLLVFHPGSYLG 111 (279)
T ss_pred HHHHHHHHHHHHcCCCcEEEEcCc-eeccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCC
Confidence 6799999999999 8888764332 2334444434456668888999999999999999988998774
No 306
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=21.85 E-value=76 Score=37.96 Aligned_cols=79 Identities=19% Similarity=0.136 Sum_probs=59.4
Q ss_pred cCccCCCCHHHHHHHHHHHHhcCCCEEEEeccc----cccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHH
Q 006395 291 DGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGV----LLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEI 366 (647)
Q Consensus 291 ~g~~~dlt~e~~~d~i~eQaeqGVDf~TIHaGv----~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~i 366 (647)
||..--|+. .++-+++.-...|...+.||-|. .-+..++....+-++.++||++| -..+-+| .+.+..+
T Consensus 398 GG~apGmNa-air~vv~~a~~~g~~V~Gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt~L-----gtsR~~~-~~~~~~i 470 (745)
T TIGR02478 398 GAPAGGMNA-ATRSAVRYAIARGHTVIAIHNGFSGLARGDVRELTWSDVEGWVGEGGSEL-----GTNRELP-GKDLGMI 470 (745)
T ss_pred CCCchhHHH-HHHHHHHHHHhCCCEEEEEecChhhhccCCeecCCHHHHHHHHhcCCccc-----ccCCCCc-hhHHHHH
Confidence 555555554 34566666667899999999987 34455566778999999999976 4556566 7789999
Q ss_pred HHHHhHhcee
Q 006395 367 LDICNQYDVA 376 (647)
Q Consensus 367 leI~k~YDVt 376 (647)
++.+++|++-
T Consensus 471 ~~~l~~~~Id 480 (745)
T TIGR02478 471 AYYFQKHKID 480 (745)
T ss_pred HHHHHHcCCC
Confidence 9999999874
No 307
>PRK06846 putative deaminase; Validated
Probab=21.84 E-value=6.2e+02 Score=27.27 Aligned_cols=40 Identities=20% Similarity=0.193 Sum_probs=26.7
Q ss_pred hhHHHHHHHHhHhceeEec----cCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeC
Q 006395 361 EHWDEILDICNQYDVALSI----GDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEG 421 (647)
Q Consensus 361 ~~FD~ileI~k~YDVtlSL----GDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEG 421 (647)
+.++++++.+++.+++++- |.|+=| ++..+++||.|-+=-
T Consensus 267 ~e~~~li~~la~~g~~v~~~~~~~~g~~p---------------------~~~l~~~Gv~v~lGt 310 (410)
T PRK06846 267 EEVEELAERLAAQGISITSTVPIGRLHMP---------------------IPLLHDKGVKVSLGT 310 (410)
T ss_pred HHHHHHHHHHHHcCCeEEEeCCCCCCCCC---------------------HHHHHhCCCeEEEec
Confidence 5667778889999977752 444322 566677888877643
No 308
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=21.80 E-value=3.5e+02 Score=27.02 Aligned_cols=119 Identities=23% Similarity=0.220 Sum_probs=64.9
Q ss_pred eEeeccccCCCCCChHHH-----HHHHHHHHHhCCCEeeecCCC-----CChHHHHHHHHh---cC---CCccccchhhh
Q 006395 222 KVNANIGNSAVASSIEEE-----VYKVQWATMWGADTVMDLSTG-----RHIHETREWILR---NS---AVPVGTVPIYQ 285 (647)
Q Consensus 222 KVNANIGtS~~~~~ie~E-----veKl~~A~~~GADtvMDLSTG-----gdi~~~R~~Il~---~s---pvPvGTVPIYq 285 (647)
|+..=|+-..-.+..+.. +.-++.|++.|||.|-=+-.- ++-++..+.|-+ .+ .+|+ |.+
T Consensus 56 ~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~v----IlE 131 (236)
T PF01791_consen 56 KVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKV----ILE 131 (236)
T ss_dssp EEEEEESTTTSSSTHHHHTCEEEHHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEE----EEE
T ss_pred ccceEEEeCCCCCccccccccchHHHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEE----EEE
Confidence 555555555555667778 899999999999987533222 345555544421 11 1111 111
Q ss_pred HHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEEecc----ccccccc---cccC-----cccCccccccH
Q 006395 286 ALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAG----VLLRYIP---LTAK-----RMTGIVSRGGS 344 (647)
Q Consensus 286 A~~k~~g~~~dlt~e~~~d~i~eQaeqGVDf~TIHaG----v~~~~~~---~~~~-----R~tgIVSRGGS 344 (647)
.+-+-.....+..+|.+....+--++.|+||+=.-.| .+...+. .... .-+||+--||.
T Consensus 132 ~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi 202 (236)
T PF01791_consen 132 PYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTGKPVGATPEDVELMRKAVEAAPVPGKVGVKASGGI 202 (236)
T ss_dssp ECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSSSCSHHHHHHHHHHHHHTHSSTTTSEEEEESSS
T ss_pred EecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCCccccccHHHHHHHHHHHHhcCCCcceEEEEeCCC
Confidence 1000000001125567888889999999999999888 2222222 1112 44568888997
No 309
>KOG0846 consensus Mitochondrial/chloroplast ribosomal protein L15/L10 [Translation, ribosomal structure and biogenesis]
Probab=21.79 E-value=31 Score=36.79 Aligned_cols=39 Identities=15% Similarity=0.310 Sum_probs=27.6
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCC
Q 006395 390 DANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMH 428 (647)
Q Consensus 390 DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~ 428 (647)
|..+.--+.-|...|-|.=.-+|+|||.+.+|++|.++.
T Consensus 111 d~~q~Idm~tL~~~g~i~p~~~eyGv~L~~~G~d~~~~~ 149 (274)
T KOG0846|consen 111 DPSQPIDMKTLKDSGLINPKGREYGVQLTADGADEFKAK 149 (274)
T ss_pred CccCceeHHHHHhccCCCccccccCceeeccCCccccce
Confidence 333444445555555556667999999999999999864
No 310
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=21.77 E-value=95 Score=33.37 Aligned_cols=74 Identities=18% Similarity=0.309 Sum_probs=55.5
Q ss_pred HHHHHHHHHhcCCCEEEEeccc----cccccccccCcccCccccccHHHHHHHHHcCCcCchh--hhHHHHHHHHhHhce
Q 006395 302 FRDTLIEQAEQGVDYFTIHAGV----LLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAY--EHWDEILDICNQYDV 375 (647)
Q Consensus 302 ~~d~i~eQaeqGVDf~TIHaGv----~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY--~~FD~ileI~k~YDV 375 (647)
++.+++.-...|+..+.+|-|. +-+.++++...+.+|.++||++|- ..+-+++. +.+..+++.++++++
T Consensus 19 i~~vv~~a~~~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~Lg-----tsR~~~~~~~~~~~~~~~~l~~~~I 93 (317)
T cd00763 19 IRGVVRSAIAEGLEVYGIRDGYAGLIAGDIVPLDRYSVSDIINRGGTFLG-----SARFPEFKDEEGQAKAIEQLKKHGI 93 (317)
T ss_pred HHHHHHHHHHCCCEEEEEecCHHHhcCCCeEeCCHHHhhhHHhCCCeeec-----cCCCCccCCHHHHHHHHHHHHHcCC
Confidence 4556666667899999999886 356667777889999999999763 44545544 688999999999987
Q ss_pred e--Eecc
Q 006395 376 A--LSIG 380 (647)
Q Consensus 376 t--lSLG 380 (647)
. +-+|
T Consensus 94 d~Li~IG 100 (317)
T cd00763 94 DALVVIG 100 (317)
T ss_pred CEEEEEC
Confidence 4 4444
No 311
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=21.70 E-value=3.9e+02 Score=27.62 Aligned_cols=84 Identities=15% Similarity=0.192 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHHHhcC-CCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHh-c
Q 006395 297 LSWEVFRDTLIEQAEQG-VDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQY-D 374 (647)
Q Consensus 297 lt~e~~~d~i~eQaeqG-VDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~Y-D 374 (647)
-+.|+|.+..+.-.+.| +|++-|+++.-. ++.||..+.+ +| +...+|++-.|+. |
T Consensus 101 ~~~~~~~~~a~~~~~aG~~D~iElN~~cP~-------------~~~gg~~~~~--------~~--~~~~eiv~~vr~~~~ 157 (301)
T PRK07259 101 STEEEYAEVAEKLSKAPNVDAIELNISCPN-------------VKHGGMAFGT--------DP--ELAYEVVKAVKEVVK 157 (301)
T ss_pred CCHHHHHHHHHHHhccCCcCEEEEECCCCC-------------CCCCcccccc--------CH--HHHHHHHHHHHHhcC
Confidence 36789999888887888 999999886421 1123443221 22 3455666666665 5
Q ss_pred eeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEE
Q 006395 375 VALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVM 418 (647)
Q Consensus 375 VtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVM 418 (647)
+.+++ =|+|. +. .+.++++++.++||.-+
T Consensus 158 ~pv~v--Kl~~~----------~~---~~~~~a~~l~~~G~d~i 186 (301)
T PRK07259 158 VPVIV--KLTPN----------VT---DIVEIAKAAEEAGADGL 186 (301)
T ss_pred CCEEE--EcCCC----------ch---hHHHHHHHHHHcCCCEE
Confidence 44432 13331 11 34567788889998743
No 312
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=21.69 E-value=2.2e+02 Score=30.96 Aligned_cols=190 Identities=19% Similarity=0.256 Sum_probs=107.7
Q ss_pred eccccCCCCCChHHHHHHHHHHHHhC-CCEe-eecCCC------------CChHHHHHHHHhcCCCccccchhhhHHHHh
Q 006395 225 ANIGNSAVASSIEEEVYKVQWATMWG-ADTV-MDLSTG------------RHIHETREWILRNSAVPVGTVPIYQALEKV 290 (647)
Q Consensus 225 ANIGtS~~~~~ie~EveKl~~A~~~G-ADtv-MDLSTG------------gdi~~~R~~Il~~spvPvGTVPIYqA~~k~ 290 (647)
.|||.|...++.++..+=+....+.| ||.| ..+|.- .-++++-+++-+.+.+|| |
T Consensus 97 ~~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~~~~Pv-----~------ 165 (310)
T COG0167 97 VNIGKNKGGPSEEAWADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAATKVPV-----F------ 165 (310)
T ss_pred cceEEecCCCcHHHHHHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhcccCce-----E------
Confidence 48888888888888888888888999 7876 455542 124455666666666444 2
Q ss_pred cCccCCC--CHHHHHHHHHHHHhcCCCEEEEecccc-ccccccccCcccCcccccc---HHHHHHHHHcCCcCchhhhHH
Q 006395 291 DGIAENL--SWEVFRDTLIEQAEQGVDYFTIHAGVL-LRYIPLTAKRMTGIVSRGG---SIHAKWCLAYHKENFAYEHWD 364 (647)
Q Consensus 291 ~g~~~dl--t~e~~~d~i~eQaeqGVDf~TIHaGv~-~~~~~~~~~R~tgIVSRGG---Si~a~Wml~~~~ENplY~~FD 364 (647)
++| ++++|.+....--+.|.|.++.=--+. +..+.........=-..|| .-+..- -.-
T Consensus 166 ----vKl~P~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~------------al~ 229 (310)
T COG0167 166 ----VKLAPNITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPI------------ALR 229 (310)
T ss_pred ----EEeCCCHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHH------------HHH
Confidence 223 689999999999999999998755433 2223332211111111222 111110 011
Q ss_pred HHHHHHhHhc--eeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcC
Q 006395 365 EILDICNQYD--VALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCN 442 (647)
Q Consensus 365 ~ileI~k~YD--VtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~nv~lqk~lc~ 442 (647)
-|-++.++.+ +-|. =-|-|.++.|+.. -|+-=+.+++ -+--.|-+||+++. +|...+....+
T Consensus 230 ~v~~l~~~~~~~ipII-----GvGGI~s~~DA~E--~i~aGA~~vQ----v~Tal~~~Gp~i~~--~I~~~l~~~l~--- 293 (310)
T COG0167 230 VVAELYKRLGGDIPII-----GVGGIETGEDALE--FILAGASAVQ----VGTALIYKGPGIVK--EIIKGLARWLE--- 293 (310)
T ss_pred HHHHHHHhcCCCCcEE-----EecCcCcHHHHHH--HHHcCCchhe----eeeeeeeeCchHHH--HHHHHHHHHHH---
Confidence 1223333333 3332 1467777777632 2322222322 22235889999874 55555554443
Q ss_pred CCCccccCccccccCCCchhHHHhHHHHH
Q 006395 443 EAPFYTLGPLTTDIAPGYDHITSAIGAAN 471 (647)
Q Consensus 443 ~APfYvLGPLvTDIApGYDHItsAIGaA~ 471 (647)
.-||+||.=+||.+.
T Consensus 294 --------------~~g~~si~d~iG~~~ 308 (310)
T COG0167 294 --------------EKGFESIQDIIGSAL 308 (310)
T ss_pred --------------HcCCCCHHHHhchhc
Confidence 347888888888764
No 313
>PRK06852 aldolase; Validated
Probab=21.66 E-value=3.2e+02 Score=29.65 Aligned_cols=97 Identities=18% Similarity=0.097 Sum_probs=63.9
Q ss_pred HHHHHHHhCCCEeeecCCC----CChHHHHHHHHhcC-CCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHh-cCCC
Q 006395 242 KVQWATMWGADTVMDLSTG----RHIHETREWILRNS-AVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAE-QGVD 315 (647)
Q Consensus 242 Kl~~A~~~GADtvMDLSTG----gdi~~~R~~Il~~s-pvPvGTVPIYqA~~k~~g~~~dlt~e~~~d~i~eQae-qGVD 315 (647)
=++.|.+.|||-|==--|+ +|.+.+|+ +++.+ ++|| .=| ||. .. +.++|++.++++.+ .|..
T Consensus 193 aaRiaaELGADIVKv~y~~~~~~g~~e~f~~-vv~~~g~vpV-----via----GG~-k~-~~~e~L~~v~~ai~~aGa~ 260 (304)
T PRK06852 193 AAGVAACLGADFVKVNYPKKEGANPAELFKE-AVLAAGRTKV-----VCA----GGS-ST-DPEEFLKQLYEQIHISGAS 260 (304)
T ss_pred HHHHHHHHcCCEEEecCCCcCCCCCHHHHHH-HHHhCCCCcE-----EEe----CCC-CC-CHHHHHHHHHHHHHHcCCc
Confidence 3588999999999766664 57788888 56666 6553 322 554 33 88999999999988 7876
Q ss_pred EEEEeccccccccc--c-ccCcccCccccccHHHHHHH
Q 006395 316 YFTIHAGVLLRYIP--L-TAKRMTGIVSRGGSIHAKWC 350 (647)
Q Consensus 316 f~TIHaGv~~~~~~--~-~~~R~tgIVSRGGSi~a~Wm 350 (647)
=+++=--|-..--| . ..+++..||-.|-|.=.+|=
T Consensus 261 Gv~~GRNIfQ~~~p~~~~~~~Ai~~IVH~~~s~~eA~~ 298 (304)
T PRK06852 261 GNATGRNIHQKPLDEAVRMCNAIYAITVEDKSVEEALK 298 (304)
T ss_pred eeeechhhhcCCCchHHHHHHHHHHHHhCCCCHHHHHH
Confidence 55543333333222 1 23677777776666655553
No 314
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=21.53 E-value=4.7e+02 Score=26.89 Aligned_cols=77 Identities=21% Similarity=0.212 Sum_probs=42.3
Q ss_pred ChHHHHHHHHHHHHhCCCEe-eecCC----------CCChHH---HHHHHHhcCCCccccchhhhHHHHhcCccCCCCHH
Q 006395 235 SIEEEVYKVQWATMWGADTV-MDLST----------GRHIHE---TREWILRNSAVPVGTVPIYQALEKVDGIAENLSWE 300 (647)
Q Consensus 235 ~ie~EveKl~~A~~~GADtv-MDLST----------Ggdi~~---~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e 300 (647)
++++=++=++.+.++|+|.| +.+|+ +++.+. +=+++-++..+||.- |.. .+.+
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~v--------Kl~-----~~~~ 166 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIV--------KLT-----PNVT 166 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEE--------EeC-----CCch
Confidence 35444555667778899987 55553 233332 333443343344331 111 1234
Q ss_pred HHHHHHHHHHhcCCCEEEEecccc
Q 006395 301 VFRDTLIEQAEQGVDYFTIHAGVL 324 (647)
Q Consensus 301 ~~~d~i~eQaeqGVDf~TIHaGv~ 324 (647)
++.+..+.-.+.|+|+++++..+.
T Consensus 167 ~~~~~a~~~~~~G~d~i~~~nt~~ 190 (296)
T cd04740 167 DIVEIARAAEEAGADGLTLINTLK 190 (296)
T ss_pred hHHHHHHHHHHcCCCEEEEECCCc
Confidence 566666656678999999986543
No 315
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=21.30 E-value=4.4e+02 Score=28.26 Aligned_cols=92 Identities=11% Similarity=0.127 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCcccc--ccHHHHHHHHHcCCcCchhhhHHHHHHHHhH-hc
Q 006395 298 SWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSR--GGSIHAKWCLAYHKENFAYEHWDEILDICNQ-YD 374 (647)
Q Consensus 298 t~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSR--GGSi~a~Wml~~~~ENplY~~FD~ileI~k~-YD 374 (647)
+++.|.+..+.-.+.|+|.+-||+|- |.. .+++. ||+++-. | +...+|++-+++ -+
T Consensus 75 ~p~~~~~aA~~~~~~g~d~IdlN~gC-----P~~-----~v~~~~~Gs~L~~~---------p--~~~~eiv~avr~~v~ 133 (333)
T PRK11815 75 DPADLAEAAKLAEDWGYDEINLNVGC-----PSD-----RVQNGRFGACLMAE---------P--ELVADCVKAMKDAVS 133 (333)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCC-----CHH-----HccCCCeeeHHhcC---------H--HHHHHHHHHHHHHcC
Confidence 67888888877666799999999994 321 11223 4554431 1 222333333333 25
Q ss_pred eeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEe
Q 006395 375 VALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMN 419 (647)
Q Consensus 375 VtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMI 419 (647)
+.+|+= +|.|.-.+ + ....+-++++++.+.||+-.+
T Consensus 134 ~pVsvK--iR~g~~~~--~-----t~~~~~~~~~~l~~aG~d~i~ 169 (333)
T PRK11815 134 IPVTVK--HRIGIDDQ--D-----SYEFLCDFVDTVAEAGCDTFI 169 (333)
T ss_pred CceEEE--EEeeeCCC--c-----CHHHHHHHHHHHHHhCCCEEE
Confidence 555543 26664332 1 123456788888899998764
No 316
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=21.24 E-value=1.6e+02 Score=27.43 Aligned_cols=59 Identities=24% Similarity=0.166 Sum_probs=36.0
Q ss_pred hhhHHHHHHHHhH-hceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEee
Q 006395 360 YEHWDEILDICNQ-YDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNE 420 (647)
Q Consensus 360 Y~~FD~ileI~k~-YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIE 420 (647)
-+.+++|.+.+++ |++.+=+=|.|.-=.-.|.++..+. -..+..|.+.|.++|+-|++=
T Consensus 126 ~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~--~~~~~~l~~la~~~~~~vi~v 185 (193)
T PF13481_consen 126 DEDLEELEAALKELYGPDLVVIDPLQSLHDGDENSNSAV--AQLMQELKRLAKEYGVAVILV 185 (193)
T ss_dssp HHHHHHHHHHHTT----SEEEEE-GGGG--S-TT-HHHH--HHHHHHHHHHHHHH--EEEEE
T ss_pred hHHHHHHHHHHhhcCCCcEEEEcCHHHHhcCCCCCHHHH--HHHHHHHHHHHHHcCCEEEEE
Confidence 4567889999998 7777655565544444477887776 456678888999999998863
No 317
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=21.11 E-value=4.5e+02 Score=26.35 Aligned_cols=101 Identities=12% Similarity=0.112 Sum_probs=60.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhc
Q 006395 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYD 374 (647)
Q Consensus 295 ~dlt~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YD 374 (647)
.++++++.++.+ ++.|.|++=+..+- . ..+ . ..-+..-+.+++|.+.+++|+
T Consensus 19 ~~~~~~e~~~~~---~~~G~~~iEl~~~~----~---~~~----------------~--~~~~~~~~~~~~l~~~l~~~g 70 (283)
T PRK13209 19 AGECWLEKLAIA---KTAGFDFVEMSVDE----S---DER----------------L--ARLDWSREQRLALVNALVETG 70 (283)
T ss_pred CCCCHHHHHHHH---HHcCCCeEEEecCc----c---ccc----------------h--hccCCCHHHHHHHHHHHHHcC
Confidence 467888877777 56788887764220 0 000 0 001122457999999999999
Q ss_pred eeEecc--CCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCC
Q 006395 375 VALSIG--DGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPG 423 (647)
Q Consensus 375 VtlSLG--DGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPG 423 (647)
+.++-. .+-.+-.....+++..=..+..+-+..+.|.+.|+.+++=+++
T Consensus 71 l~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~~~ 121 (283)
T PRK13209 71 FRVNSMCLSAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQLAGY 121 (283)
T ss_pred CceeEEecccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCc
Confidence 998632 1111112222333333334666778899999999999975443
No 318
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=21.08 E-value=1.1e+02 Score=32.49 Aligned_cols=61 Identities=15% Similarity=0.295 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhc
Q 006395 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYD 374 (647)
Q Consensus 295 ~dlt~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~YD 374 (647)
+..+.|.+-+-|+.-.+.|++.++|+- +.-..++ -.+-.+-|+.+|++|+.|++++
T Consensus 5 e~~~~e~~~~d~~~m~~~G~n~vri~~-~~W~~lE-----------------------P~eG~ydF~~lD~~l~~a~~~G 60 (374)
T PF02449_consen 5 EQWPEEEWEEDLRLMKEAGFNTVRIGE-FSWSWLE-----------------------PEEGQYDFSWLDRVLDLAAKHG 60 (374)
T ss_dssp GGS-CCHHHHHHHHHHHHT-SEEEE-C-CEHHHH------------------------SBTTB---HHHHHHHHHHHCTT
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEEE-echhhcc-----------------------CCCCeeecHHHHHHHHHHHhcc
Confidence 344556666777777888999998865 2333333 2334456788999999999999
Q ss_pred eeEec
Q 006395 375 VALSI 379 (647)
Q Consensus 375 VtlSL 379 (647)
+.+-|
T Consensus 61 i~viL 65 (374)
T PF02449_consen 61 IKVIL 65 (374)
T ss_dssp -EEEE
T ss_pred CeEEE
Confidence 86665
No 319
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=20.88 E-value=8.4e+02 Score=24.29 Aligned_cols=99 Identities=17% Similarity=0.169 Sum_probs=59.1
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHh
Q 006395 294 AENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQY 373 (647)
Q Consensus 294 ~~dlt~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~Y 373 (647)
+..+|+++.++.+ ++.|.|++=+... . ... .....++-.++.++|.+++++|
T Consensus 13 ~~~~~~~e~~~~~---~~~G~~~iEl~~~--~-----~~~------------------~~~~~~~~~~~~~~l~~~l~~~ 64 (284)
T PRK13210 13 PKHLSWEERLVFA---KELGFDFVEMSVD--E-----SDE------------------RLARLDWSKEERLSLVKAIYET 64 (284)
T ss_pred CCCCCHHHHHHHH---HHcCCCeEEEecC--C-----ccc------------------ccccccCCHHHHHHHHHHHHHc
Confidence 3568888777766 5788888877421 0 000 0001111245789999999999
Q ss_pred ceeEec--cCCCCCCCccCCCcHHH-HHHHHHHHHHHHHHHhcCCeEEeeC
Q 006395 374 DVALSI--GDGLRPGSIYDANDTAQ-FAELLTQGELTRRAWDKDVQVMNEG 421 (647)
Q Consensus 374 DVtlSL--GDGLRPG~i~DA~D~AQ-~~EL~~LGEL~krA~e~gVQVMIEG 421 (647)
.+.+|- .++.++=.+.+ .|... -+-+..+-++.+.|.+.|+.+++=.
T Consensus 65 Gl~i~~~~~~~~~~~~~~~-~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~ 114 (284)
T PRK13210 65 GVRIPSMCLSGHRRFPFGS-RDPATRERALEIMKKAIRLAQDLGIRTIQLA 114 (284)
T ss_pred CCCceEEecccccCcCCCC-CCHHHHHHHHHHHHHHHHHHHHhCCCEEEEC
Confidence 999872 13322111222 23222 2235567788899999999998743
No 320
>PF03746 LamB_YcsF: LamB/YcsF family; InterPro: IPR005501 This entry represents the uncharacterised protein family UPF0271, including LamB. The lam locus of Emericella nidulans (Aspergillus nidulans) consists of two divergently transcribed genes, lamA and lamB, involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression []. The exact molecular function of the proteins in this family is unknown.; PDB: 1V6T_A 1XW8_A 2XU2_A 2DFA_A.
Probab=20.77 E-value=83 Score=33.07 Aligned_cols=78 Identities=22% Similarity=0.293 Sum_probs=49.4
Q ss_pred ceeEeeccccCCCCCC--hHHHHHHHHHHHHhCCCEeeecCC---------CCChHHHHHHHH--hcCCCccccchhhhH
Q 006395 220 LVKVNANIGNSAVASS--IEEEVYKVQWATMWGADTVMDLST---------GRHIHETREWIL--RNSAVPVGTVPIYQA 286 (647)
Q Consensus 220 ~tKVNANIGtS~~~~~--ie~EveKl~~A~~~GADtvMDLST---------Ggdi~~~R~~Il--~~spvPvGTVPIYqA 286 (647)
++++|+.+|-|-..-. .++++ |.+-| .||-..+|+.+- +...|-||-=|=|.-
T Consensus 1 ~IdlN~DlGE~~g~~~~g~D~~l--------------mp~I~saNIACG~HAGDp~~M~~tv~lA~~~gV~iGAHPsyPD 66 (242)
T PF03746_consen 1 KIDLNCDLGEGFGAWSMGDDEAL--------------MPYISSANIACGFHAGDPETMRRTVRLAKEHGVAIGAHPSYPD 66 (242)
T ss_dssp EEEEEEEESSSBTTB--S-HHHH--------------TTT-SEEEEE-SSSS--HHHHHHHHHHHHHTT-EEEEE---S-
T ss_pred CeeeeeecCCCCCCCCCCCHHHH--------------HHHhhhHHHhhcccccCHHHHHHHHHHHHHcCCEeccCCCCCC
Confidence 5789999999886433 34443 55544 468888998875 566899999999999
Q ss_pred HHHhcCccCCCCHHHHHHHHHHHHh
Q 006395 287 LEKVDGIAENLSWEVFRDTLIEQAE 311 (647)
Q Consensus 287 ~~k~~g~~~dlt~e~~~d~i~eQae 311 (647)
++-.|....+|+.+++.+.|..|..
T Consensus 67 ~~gFGRr~m~~s~~el~~~v~yQig 91 (242)
T PF03746_consen 67 REGFGRRSMDISPEELRDSVLYQIG 91 (242)
T ss_dssp TTTTT-S-----HHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 8888888899999999999999975
No 321
>CHL00120 psaL photosystem I subunit XI; Validated
Probab=20.74 E-value=29 Score=34.00 Aligned_cols=45 Identities=38% Similarity=0.499 Sum_probs=31.4
Q ss_pred CCccccCcc-ccccCCCchhHHHhHHHHHhhhcccceeeecCchhhc
Q 006395 444 APFYTLGPL-TTDIAPGYDHITSAIGAANIGALGTALLCYVTPKEHL 489 (647)
Q Consensus 444 APfYvLGPL-vTDIApGYDHItsAIGaA~aa~~Gad~LCYVTPaEHL 489 (647)
-||+.|||| -||+|- ---.-||||-.++...+-.+.--|+.++.-
T Consensus 60 GPf~~lGPLRnt~~a~-laGllsaiglv~Ilt~~L~~Yg~~~~~~~~ 105 (143)
T CHL00120 60 GPFYKLGPLRNSDVAL-LAGFLSAIGLIIILTLCLTIYGVVSFQEED 105 (143)
T ss_pred chHHhhCCCcCchHHH-HHHHHHHHHHHHHHHHHHHHhcccccCCCC
Confidence 499999999 677752 334567888888776666665556666543
No 322
>PRK07213 chlorohydrolase; Provisional
Probab=20.65 E-value=1e+03 Score=25.32 Aligned_cols=97 Identities=14% Similarity=0.143 Sum_probs=55.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhH----HHHHHHH
Q 006395 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHW----DEILDIC 370 (647)
Q Consensus 295 ~dlt~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~F----D~ileI~ 370 (647)
..++.+.|...++.-.+.|+ .+++|++=+.........+. |.--..|+...+-..-+..|- |+-++.+
T Consensus 174 ~~~s~~~l~~~~~~A~~~g~-~v~~H~~e~~~e~~~~~~~~-------G~~~v~~~~~~G~~~~~i~H~~~~~~~~i~~l 245 (375)
T PRK07213 174 NEYSDEELKFICKECKREKK-IFSIHAAEHKGSVEYSLEKY-------GMTEIERLINLGFKPDFIVHATHPSNDDLELL 245 (375)
T ss_pred ccCCHHHHHHHHHHHHHcCC-EEEEeeCCchhHHHHHHHHc-------CCChHHHHHhcCCCCCEEEECCCCCHHHHHHH
Confidence 45778887777777777787 55899975544333211111 111134555443321122332 3458888
Q ss_pred hHhceeEe--------ccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEee
Q 006395 371 NQYDVALS--------IGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNE 420 (647)
Q Consensus 371 k~YDVtlS--------LGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIE 420 (647)
++++++++ ||.|+-| ++++.++||.|-+=
T Consensus 246 a~~g~~v~~~P~sn~~l~~g~~~---------------------v~~l~~~Gv~v~lG 282 (375)
T PRK07213 246 KENNIPVVVCPRANASFNVGLPP---------------------LNEMLEKGILLGIG 282 (375)
T ss_pred HHcCCcEEECCcchhhhccCCcc---------------------HHHHHHCCCEEEEe
Confidence 99996543 3444322 46778889988874
No 323
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=20.62 E-value=81 Score=34.06 Aligned_cols=58 Identities=26% Similarity=0.203 Sum_probs=36.5
Q ss_pred HHHHHHHHHhCCCEeeec----------------CCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHH
Q 006395 240 VYKVQWATMWGADTVMDL----------------STGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFR 303 (647)
Q Consensus 240 veKl~~A~~~GADtvMDL----------------STGgdi~~~R~~Il~~spvPvGTVPIYqA~~k~~g~~~dlt~e~~~ 303 (647)
.|.+++|.++||-+||-| |+-.||.+||+. ..+|| --- .| ..+|
T Consensus 20 ~eqa~iae~aga~avm~le~~p~d~r~~ggv~R~~~p~~I~~I~~~----V~iPV-----ig~-~k----------igh~ 79 (287)
T TIGR00343 20 PEQAKIAEEAGAVAVMALERVPADIRASGGVARMSDPKMIKEIMDA----VSIPV-----MAK-VR----------IGHF 79 (287)
T ss_pred HHHHHHHHHcCceEEEeeccCchhhHhcCCeeecCCHHHHHHHHHh----CCCCE-----EEE-ee----------ccHH
Confidence 477899999999999986 333455555544 34443 211 11 1115
Q ss_pred HHHHHHHhcCCCEE
Q 006395 304 DTLIEQAEQGVDYF 317 (647)
Q Consensus 304 d~i~eQaeqGVDf~ 317 (647)
.....-.+-||||+
T Consensus 80 ~Ea~~L~~~GvDiI 93 (287)
T TIGR00343 80 VEAQILEALGVDYI 93 (287)
T ss_pred HHHHHHHHcCCCEE
Confidence 55566678999998
No 324
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=20.59 E-value=1.1e+02 Score=32.68 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEeccc
Q 006395 296 NLSWEVFRDTLIEQAEQGVDYFTIHAGV 323 (647)
Q Consensus 296 dlt~e~~~d~i~eQaeqGVDf~TIHaGv 323 (647)
.+|.++.++.+..-.+.||||++||.|-
T Consensus 231 g~~~ee~~~i~~~L~~~GvD~I~Vs~g~ 258 (353)
T cd04735 231 GIRMEDTLALVDKLADKGLDYLHISLWD 258 (353)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccCc
Confidence 5678888888888888999999999984
No 325
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=20.58 E-value=3.8e+02 Score=29.92 Aligned_cols=85 Identities=15% Similarity=0.256 Sum_probs=58.4
Q ss_pred cccCccccccHHHHH-H----HHHcCCcCchhh------hHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHH
Q 006395 334 RMTGIVSRGGSIHAK-W----CLAYHKENFAYE------HWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLT 402 (647)
Q Consensus 334 R~tgIVSRGGSi~a~-W----ml~~~~ENplY~------~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~ 402 (647)
.-+|.|||--+.... | |+.|=.-|=+|. +|-++...++++|+.||-|= |.+.|..-.-+|.-+
T Consensus 68 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aDlvI~gGG----~lfqD~y~~~~~~y~-- 141 (426)
T PRK10017 68 SAAGVVGRVKKVLRRRYQHQVLLSRVTDTGKLRNIAIAQGFTDFVRLLSGYDAIIQVGG----SFFVDLYGVPQFEHA-- 141 (426)
T ss_pred cccccchhHHHHHHhhhhHHHHHhhhccccccccccchhhHHHHHHHHHhCCEEEECCC----CccccCcccHHHHHH--
Confidence 457899996666542 5 455545555544 46678899999999999983 334565444444322
Q ss_pred HHHHHHHHHhcCCeEEeeCCCCCCCCc
Q 006395 403 QGELTRRAWDKDVQVMNEGPGHIPMHK 429 (647)
Q Consensus 403 LGEL~krA~e~gVQVMIEGPGHVPl~~ 429 (647)
..|+..|..||+=|-|==|++.
T Consensus 142 -----l~A~l~gkpv~l~gqsiGPf~~ 163 (426)
T PRK10017 142 -----LCAFMAKKPLYMIGHSVGPFQD 163 (426)
T ss_pred -----HHHHHcCCCEEEECCcCCCcCC
Confidence 2577899999999888778875
No 326
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=20.53 E-value=3.3e+02 Score=27.78 Aligned_cols=77 Identities=14% Similarity=0.208 Sum_probs=46.4
Q ss_pred CCceeEeeccccCCCCCChHHHHHHHHHHHHhCCCEeeecCCCC-----ChHHHHHHHHhcCCCccccchhhhHHHHhcC
Q 006395 218 NFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTVMDLSTGR-----HIHETREWILRNSAVPVGTVPIYQALEKVDG 292 (647)
Q Consensus 218 g~~tKVNANIGtS~~~~~ie~EveKl~~A~~~GADtvMDLSTGg-----di~~~R~~Il~~spvPvGTVPIYqA~~k~~g 292 (647)
-+.+|+..+. . ++-++=++.+.++|+|.| ..+++. |++.+++-- . ++||. .+|
T Consensus 141 pVsvKir~g~--~------~~~~~la~~l~~aG~d~i-hv~~~~~g~~ad~~~I~~i~---~-----~ipVI-----gnG 198 (233)
T cd02911 141 PVSVKIRAGV--D------VDDEELARLIEKAGADII-HVDAMDPGNHADLKKIRDIS---T-----ELFII-----GNN 198 (233)
T ss_pred CEEEEEcCCc--C------cCHHHHHHHHHHhCCCEE-EECcCCCCCCCcHHHHHHhc---C-----CCEEE-----EEC
Confidence 4778888763 1 222334567789999965 777765 344444421 1 24443 245
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCCEEEEecc
Q 006395 293 IAENLSWEVFRDTLIEQAEQGVDYFTIHAG 322 (647)
Q Consensus 293 ~~~dlt~e~~~d~i~eQaeqGVDf~TIHaG 322 (647)
.+. |+++..+.++ .|+|.+-|=-|
T Consensus 199 gI~--s~eda~~~l~----~GaD~VmiGR~ 222 (233)
T cd02911 199 SVT--TIESAKEMFS----YGADMVSVARA 222 (233)
T ss_pred CcC--CHHHHHHHHH----cCCCEEEEcCC
Confidence 554 6788777775 48998876544
No 327
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=20.51 E-value=67 Score=36.93 Aligned_cols=55 Identities=33% Similarity=0.400 Sum_probs=34.3
Q ss_pred ceeEeeccccCCCCCChHHHHHHHHHHHH---hCCCEeeecCCCCChHH-HHHHHHhcCCCccccchhhhHHHH
Q 006395 220 LVKVNANIGNSAVASSIEEEVYKVQWATM---WGADTVMDLSTGRHIHE-TREWILRNSAVPVGTVPIYQALEK 289 (647)
Q Consensus 220 ~tKVNANIGtS~~~~~ie~EveKl~~A~~---~GADtvMDLSTGgdi~~-~R~~Il~~spvPvGTVPIYqA~~k 289 (647)
.|+||+.+ +|++|++.-++ +=.|||||+|-|--+== -| ---|.-+.+|-||.-.+
T Consensus 322 lV~vnV~~----------~El~~~k~~I~~LiyP~dtvmD~SIgcafwFAsr-----g~G~~~~~~~sy~s~a~ 380 (520)
T KOG0573|consen 322 LVEVNVTY----------EELQKAKEHIKHLIYPKDTVMDLSIGCAFWFASR-----GRGVDSENQQSYRSYAR 380 (520)
T ss_pred EEeccCCH----------HHHHHHHHHHHHhhCcCccccccccceEEEEeec-----cccccccCccccccccE
Confidence 46777654 78888877654 78999999998742210 00 00144667777775333
No 328
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=20.26 E-value=9.6e+02 Score=24.74 Aligned_cols=90 Identities=18% Similarity=0.161 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHh-
Q 006395 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQY- 373 (647)
Q Consensus 295 ~dlt~e~~~d~i~eQaeqGVDf~TIHaGv~~~~~~~~~~R~tgIVSRGGSi~a~Wml~~~~ENplY~~FD~ileI~k~Y- 373 (647)
.+++++.+.+.++.+.+.|||-+.+ +|-+=+...++ -+++.++++++.++
T Consensus 14 g~iD~~~~~~~i~~l~~~Gv~Gi~~-~GstGE~~~Ls----------------------------~~Er~~~~~~~~~~~ 64 (285)
T TIGR00674 14 GSVDFAALEKLIDFQIENGTDAIVV-VGTTGESPTLS----------------------------HEEHKKVIEFVVDLV 64 (285)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEE-CccCcccccCC----------------------------HHHHHHHHHHHHHHh
Confidence 4699999999999999999999876 45444443332 24455666666554
Q ss_pred --ceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCe-EEeeCCCCCCC
Q 006395 374 --DVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQ-VMNEGPGHIPM 427 (647)
Q Consensus 374 --DVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQ-VMIEGPGHVPl 427 (647)
++.+-. |..+.+ +.| .-+|++.|.+.|+. ||+=-|=+.++
T Consensus 65 ~~~~~vi~------gv~~~s-----~~~---~i~~a~~a~~~Gad~v~v~pP~y~~~ 107 (285)
T TIGR00674 65 NGRVPVIA------GTGSNA-----TEE---AISLTKFAEDVGADGFLVVTPYYNKP 107 (285)
T ss_pred CCCCeEEE------eCCCcc-----HHH---HHHHHHHHHHcCCCEEEEcCCcCCCC
Confidence 233332 222222 222 44677888888888 56633444443
No 329
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=20.20 E-value=45 Score=23.19 Aligned_cols=10 Identities=50% Similarity=1.165 Sum_probs=8.1
Q ss_pred CCCcccCCCC
Q 006395 564 VAHFCSMCGP 573 (647)
Q Consensus 564 ~~~~CSMCGp 573 (647)
.+.||+.||-
T Consensus 12 ~~~fC~~CG~ 21 (23)
T PF13240_consen 12 DAKFCPNCGT 21 (23)
T ss_pred cCcchhhhCC
Confidence 4689999994
Done!